RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16205
(109 letters)
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 131 bits (331), Expect = 2e-37
Identities = 57/104 (54%), Positives = 81/104 (77%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGKLLGQR 60
MYGLPTDT+RK+F+T++ +NG++P Y+E+ F+F+KVVLPDLAV+R V +ENGK +G R
Sbjct: 675 MYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEENGKFIGHR 734
Query: 61 ILPLDGLQAGYRHISLRTEANFPMSLPMLFCNIELKIYVPDGFE 104
++PLDG++ GYRH+ LR E+N P+ L +F +I K YV D F
Sbjct: 735 VMPLDGIKPGYRHVPLRNESNRPLGLASVFAHIVAKDYVSDAFA 778
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 132 bits (331), Expect = 2e-37
Identities = 52/104 (50%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGKLLGQR 60
M+GLP DT RK +RTR N NPV++EEPF F KVVLP LA LR ++E GK +G R
Sbjct: 750 MFGLPVDTRRK-YRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEGGKFVGHR 808
Query: 61 ILPLDGLQAGYRHISLRTEANFPMSLPMLFCNIELKIYVPDGFE 104
ILP+ +++GY ++ LR EAN P+ LP L E Y+PD +
Sbjct: 809 ILPVSAIRSGYHYVCLRNEANQPLCLPALLIYTEASDYIPDDHQ 852
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 120 bits (302), Expect = 2e-33
Identities = 41/96 (42%), Positives = 65/96 (67%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGKLLGQR 60
++GLP D R+ +N +NPV+ EEPF+F K+++P+LA LR V +E K LG R
Sbjct: 703 LFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEGNKFLGHR 762
Query: 61 ILPLDGLQAGYRHISLRTEANFPMSLPMLFCNIELK 96
I+P++ L +GY H+ L +E+N P+++P LF +E+K
Sbjct: 763 IIPINALNSGYHHLCLHSESNMPLTMPALFIFLEMK 798
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 97.7 bits (242), Expect = 2e-25
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGK----L 56
++G+ DT + +T + +NG NP ++ E F F +V +PDLA++RF V D +
Sbjct: 528 IHGVGRDTGSR--QTAVITNNGFNPRWDME-FEF-EVTVPDLALVRFMVEDYDSSSKNDF 583
Query: 57 LGQRILPLDGLQAGYRHISLRTEANFPMSLPMLFCNIELK 96
+GQ +P + L+ GYRH+ L ++ LF I ++
Sbjct: 584 IGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFVKISIQ 623
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 42.7 bits (101), Expect = 1e-06
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENG----KLLGQRILPLDG 66
++ ++ + G P +NE F+F V L+ ++D++ +G+ +PL+
Sbjct: 42 QDQKSNVAEGMGTTPEWNET-FIFT--VSEGTTELKAKIFDKDVGTEDDAVGEATIPLEP 98
Query: 67 L 67
+
Sbjct: 99 V 99
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 41.6 bits (98), Expect = 4e-06
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG---- 54
++ LP + + RT+ + NPV+NE + + D+ LR V DE+
Sbjct: 56 LHLLPGASKSNKLRTKTLRNT-RNPVWNET-LQYHGITEEDMQRKTLRISVCDEDKFGHN 113
Query: 55 KLLGQRILPLDGLQAGYRH 73
+ +G+ L L+A R
Sbjct: 114 EFIGETRFSLKKLKANQRK 132
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 40.8 bits (96), Expect = 7e-06
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 4 LPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENG---KLLGQR 60
+ T + RTR ++ +NPV+NE F F + VL + D N + LG
Sbjct: 35 ISTTPDSR-KRTRHFNND-INPVWNET-FEF-ILDPNQENVLEITLMDANYVMDETLGTA 90
Query: 61 ILPLDGLQAGYRH 73
+ ++ G +
Sbjct: 91 TFTVSSMKVGEKK 103
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 42.2 bits (98), Expect = 7e-06
Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 20/108 (18%)
Query: 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGK----LLGQRILPLD- 65
+EFRT + +N NP + ++ F V+L LR V+D + LLG
Sbjct: 425 QEFRTGVVWNN-NNPRWTDK-MDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHS 482
Query: 66 -------GLQAGYRHISLRTEANFPMSLPMLFCNIELKIYVPDGFEGN 106
L G S + P L C Y P G G+
Sbjct: 483 GFHEVTCELNHGRVKFSYHAKCL-P-HLTGGTCL----EYAPQGLLGD 524
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 39.1 bits (91), Expect = 5e-05
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 3 GLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENG----KLLG 58
P I +T+ + LNP +NEE LFR VLP + F V+DEN LG
Sbjct: 38 YDPMSGILTSVQTKTIKKS-LNPKWNEE-ILFR--VLPQRHRILFEVFDENRLTRDDFLG 93
Query: 59 QRILPLDGLQAG 70
Q +PL L
Sbjct: 94 QVDVPLYPLPTE 105
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 38.4 bits (90), Expect = 7e-05
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG---- 54
+Y LP + + + RT+ L P +N+ F++ V + +L ++D+
Sbjct: 45 IYFLPDRSDKNKRRTKTVKKT-LEPKWNQT-FIYSPVHRREFRERMLEITLWDQARVREE 102
Query: 55 --KLLGQRILPLDGLQ 68
+ LG+ ++ L+
Sbjct: 103 ESEFLGEILIELETAL 118
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 38.1 bits (89), Expect = 9e-05
Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 10 RKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG----KLLGQRILP 63
+ + +TR+ L+P ++E F F + + L F + + ++G+ ++P
Sbjct: 57 KHKVKTRVLRKT-LDPAFDET-FTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIP 114
Query: 64 LDGLQAGYRHISLRTE 79
L G++ + + E
Sbjct: 115 LSGIELSEGKMLMNRE 130
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 38.1 bits (89), Expect = 1e-04
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 10 RKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG----KLLGQRILP 63
+ + T++ N LNP +NE FLF + +L V D + +G+ +P
Sbjct: 60 KHKLETKVKRKN-LNPHWNET-FLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIP 117
Query: 64 LDGLQ 68
L+ +
Sbjct: 118 LNKVD 122
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 37.7 bits (88), Expect = 1e-04
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG---- 54
+Y LP + + + RT+ L P +N+ F++ V + +L ++D+
Sbjct: 48 IYFLPDRSDKNKRRTKTVKKT-LEPKWNQT-FIYSPVHRREFRERMLEITLWDQARVREE 105
Query: 55 --KLLGQRILPLDGLQ 68
+ LG+ ++ L+
Sbjct: 106 ESEFLGEILIELETAL 121
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 37.3 bits (86), Expect = 2e-04
Identities = 13/68 (19%), Positives = 18/68 (26%), Gaps = 9/68 (13%)
Query: 10 RKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENG----KLLGQRILPLD 65
+ +T P YNEE F + D L V+ E + L
Sbjct: 71 VRVGQTSTKQ-KTNKPTYNEE-FCAN---VTDGGHLELAVFHETPLGYDHFVANCTLQFQ 125
Query: 66 GLQAGYRH 73
L
Sbjct: 126 ELLRTTGA 133
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 37.0 bits (86), Expect = 2e-04
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 3 GLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN--GK--LLG 58
P + + +T+ + LNP +NEE LFR V P L F V+DEN + LG
Sbjct: 50 YDPMNGVLTSVQTKTIKKS-LNPKWNEE-ILFR--VHPQQHRLLFEVFDENRLTRDDFLG 105
Query: 59 QRILPLDGLQAG 70
Q +PL L
Sbjct: 106 QVDVPLYPLPTE 117
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 37.2 bits (86), Expect = 3e-04
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 9/79 (11%)
Query: 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENG----KLLGQRILPLDG 66
+ +T C + +P + + + ++ L F V+ LLG L +
Sbjct: 68 QSKKTEKCNNT-NSPKWKQP-LTVI---VTPVSKLHFRVWSHQTLKSDVLLGTAALDIYE 122
Query: 67 LQAGYRHISLRTEANFPMS 85
+
Sbjct: 123 TLKSNNMKLEEVVVTLQLG 141
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 36.6 bits (85), Expect = 3e-04
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG----KLLGQRILPL 64
++ +T+ + LNPV+NE F +P L V D KL+G + L
Sbjct: 38 EKKKTKKVDNE-LNPVWNEI-LEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVAL 95
Query: 65 DGLQAG 70
L
Sbjct: 96 KDLTGD 101
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 36.6 bits (85), Expect = 3e-04
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 4 LPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG----KLL 57
T E +T L L+ + E + + +L L + + +
Sbjct: 53 AN-RTGSVEAQTALKKRQ-LHTTWEEG-LVL-PLAEEELPTATLTLTLRTCDRFSRHSVA 108
Query: 58 GQRILPLDGL 67
G+ L LDG
Sbjct: 109 GELRLGLDGT 118
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 37.1 bits (86), Expect = 3e-04
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 10 RKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDEN----GKLLGQRILP 63
+K+F T++ LNPV+NE+ F F KV +LA L VYD + ++G+ +P
Sbjct: 53 KKKFETKVHRKT-LNPVFNEQ-FTF-KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVP 109
Query: 64 LDGL 67
++ +
Sbjct: 110 MNTV 113
Score = 33.2 bits (76), Expect = 0.009
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 4 LPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDENGK----LL 57
+ K+ +T + + LNP YNE F F +V + + V D + +
Sbjct: 180 MQNGKRLKKKKTTIKKNT-LNPYYNES-FSF-EVPFEQIQKVQVVVTVLDYDKIGKNDAI 236
Query: 58 GQRILPLDGLQAGYRH 73
G+ + + A RH
Sbjct: 237 GKVFVGYNSTGAELRH 252
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 36.5 bits (85), Expect = 4e-04
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG---- 54
Y LP + +T++ NP +NE ++ L L+ V
Sbjct: 46 TYLLPDTHKTSKRKTKISRKT-RNPTFNEM-LVYSGYSKETLRQRELQLSVLSAESLREN 103
Query: 55 KLLGQRILPLDGLQ 68
LG LPL
Sbjct: 104 FFLGGITLPLKDFN 117
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 36.2 bits (84), Expect = 4e-04
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 5 PTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDEN--GK--LLG 58
+ + RT+ + LNP +N+ +++ + + L L V+D + LG
Sbjct: 58 QNASAEYKRRTKYVQKS-LNPEWNQT-VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLG 115
Query: 59 QRILPLDGLQ 68
+ ++ L
Sbjct: 116 EVLIDLSSTS 125
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 34.8 bits (80), Expect = 0.002
Identities = 6/64 (9%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENG----KLLGQRILPLDG 66
+ +T +P +++E F+ + + + V+ + + + +
Sbjct: 50 RIGQTATKQKT-NSPAWHDE-FVTD---VCNGRKIELAVFHDAPIGYDDFVANCTIQFEE 104
Query: 67 LQAG 70
L
Sbjct: 105 LLQN 108
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 34.7 bits (80), Expect = 0.002
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 4 LPTDT-IRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG----KL 56
LP FRTR ++ V+NE F + P L LR V + +
Sbjct: 73 LPCSESTTCLFRTRPLDAS-DTLVFNEV-FWV-SMSYPALHQKTLRVDVCTTDRSHLEEC 129
Query: 57 LGQRILPL 64
LG + L
Sbjct: 130 LGGAQISL 137
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding,
membrane associate, lipid binding PROT; 1.96A {Homo
sapiens} PDB: 2jqz_A
Length = 132
Score = 34.7 bits (80), Expect = 0.002
Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 12/66 (18%)
Query: 10 RKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGK-------LLGQRIL 62
+ T + L+P +N+ + + + V++ LG L
Sbjct: 38 GQCHSTDTVKNT-LDPKWNQH-YDLY---VGKTDSITISVWNHKKIHKKQGAGFLGCVRL 92
Query: 63 PLDGLQ 68
+ +
Sbjct: 93 LSNAIS 98
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 33.9 bits (78), Expect = 0.003
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 10 RKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG----KLLGQRILP 63
+K+F T++ LNPV+NE+ F F KV +L L VYD + ++G+ +P
Sbjct: 68 KKKFETKVHRKT-LNPVFNEQ-FTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVP 124
Query: 64 LDGL 67
++ +
Sbjct: 125 MNTV 128
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 33.9 bits (78), Expect = 0.003
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 10 RKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG----KLLGQRILP 63
+ +T + PV+ E + F ++ + L V D + ++G+ +P
Sbjct: 67 KNSKQTGVKRKT-QKPVFEER-YTF-EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVP 123
Query: 64 LDGL 67
L +
Sbjct: 124 LCEV 127
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 33.9 bits (78), Expect = 0.003
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDEN--GK- 55
+ +P + +T+ S LNP +NE F F+ + P L ++D + +
Sbjct: 43 LKLIPDPKNESKQKTKTIRST-LNPQWNES-FTFK--LKPSDKDRRLSVEIWDWDRTTRN 98
Query: 56 -LLGQRILPLDGLQ 68
+G + L
Sbjct: 99 DFMGSLSFGVSELM 112
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 33.8 bits (78), Expect = 0.004
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN--GK--LLGQRILPLDG 66
+T N LNP +N+ F F + VL V+DE+ LG+ +PL
Sbjct: 45 DRLQTHTVYKN-LNPEWNKV-FTF--PIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLS 100
Query: 67 LQAG 70
++ G
Sbjct: 101 IRDG 104
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 33.9 bits (78), Expect = 0.004
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 10 RKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG----KLLGQRILP 63
+K+F T++ LNPV+NE+ F F KV +L L VYD + ++G+ +P
Sbjct: 76 KKKFETKVHRKT-LNPVFNEQ-FTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVP 132
Query: 64 LDGL 67
++ +
Sbjct: 133 MNTV 136
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 33.5 bits (77), Expect = 0.004
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 4 LPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG----KLL 57
+ +T + N V+NE F+F + L + F V D +++
Sbjct: 60 YHAKKRISKKKTHVKKCT-PNAVFNEL-FVF-DIPCESLEEISVEFLVLDSERGSRNEVI 116
Query: 58 GQRILPLDGLQAGYRH 73
G+ +L +G H
Sbjct: 117 GRLVLGATAEGSGGGH 132
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 32.7 bits (75), Expect = 0.007
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG---- 54
MY LP +T + LNPV+++ F F V LP++ L V + G
Sbjct: 50 MYLLPDKRRSGRRKTHVSKKT-LNPVFDQS-FDF-SVSLPEVQRRTLDVAVKNSGGFLSK 106
Query: 55 --KLLGQRILPLDGL 67
LLG+ ++ L
Sbjct: 107 DKGLLGKVLVALASE 121
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 33.1 bits (76), Expect = 0.008
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENGK--- 55
+ +P D+ + +T+ P +P ++E F F V + L V++ +
Sbjct: 53 ISLIPEDSRLRHQKTQTVPDC-RDPAFHEH-FFFP--VQEEDDQKRLLVTVWNRASQSRQ 108
Query: 56 --LLGQRILPLDGLQAGYRHIS 75
L+G + L + IS
Sbjct: 109 SGLIGCMSFGVKSLLTPDKEIS 130
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 32.7 bits (75), Expect = 0.008
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENG---- 54
Y LP + + + +T + +NP+Y+E + ++ LA L+F V+
Sbjct: 51 TYLLPDKSRQGKRKTSIKRDT-VNPLYDET-LRY-EIPESLLAQRTLQFSVWHHGRFGRN 107
Query: 55 KLLGQRILPLDGL 67
LG+ + +D
Sbjct: 108 TFLGEAEIQMDSW 120
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 32.7 bits (75), Expect = 0.009
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 4 LPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDENG----KLL 57
+ D ++ +T N LNP++NE F F + L + V D++ ++
Sbjct: 46 MYKDKRVEKKKTVTKKRN-LNPIFNES-FAF-DIPTEKLRETTIIITVMDKDKLSRNDVI 102
Query: 58 GQRILPLDGLQAGYRH 73
G+ L +H
Sbjct: 103 GKIYLSWKSGPGEVKH 118
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 32.9 bits (75), Expect = 0.010
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 10 RKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDEN 53
+K+F+T++ LNP++NE F F V L +LA L F VYD +
Sbjct: 54 KKKFQTKVHRKT-LNPIFNET-FQF-SVPLAELAQRKLHFSVYDFD 96
Score = 29.8 bits (67), Expect = 0.15
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 4 LPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL--AVLRFGVYDENGK----LL 57
+ K+ +T + + LNP YNE +F V + L V D + ++
Sbjct: 182 ISEGRRLKKRKTSIKKNT-LNPTYNEA-LVF-DVAPESVENVGLSIAVVDYDCIGHNEVI 238
Query: 58 GQRILPLDGLQA-GYRH 73
G + + G H
Sbjct: 239 GVCRVGPEAADPHGREH 255
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 31.6 bits (72), Expect = 0.023
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDL-AVLRFGVYDEN--GK-- 55
+ +P + +T+ + LNP +NE F F ++ D L ++D + +
Sbjct: 58 LKLIPDPKSESKQKTKTIKCS-LNPEWNET-FRF-QLKESDKDRRLSVEIWDWDLTSRND 114
Query: 56 LLGQRILPLDGLQ 68
+G + LQ
Sbjct: 115 FMGSLSFGISELQ 127
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 31.2 bits (71), Expect = 0.032
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 4 LPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENGK----LL 57
P + + +T++ LNP +NEE F + + DLA L V+D + +
Sbjct: 67 KPDMGKKAKHKTQIKKKT-LNPEFNEE-FFY-DIKHSDLAKKSLDISVWDYDIGKSNDYI 123
Query: 58 GQRILPLDGLQAGYRH 73
G L + +H
Sbjct: 124 GGCQLGISAKGERLKH 139
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 30.5 bits (69), Expect = 0.056
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 1 MYGLPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDENGKL---- 56
+Y L + +TR+ L+P+Y + +F P VL+ V+ + G++
Sbjct: 58 VYLLENGACIAKKKTRIARKT-LDPLYQQS-LVFD--ESPQGKVLQVIVWGDYGRMDHKC 113
Query: 57 -LGQRILPLDGL 67
+G + L+ L
Sbjct: 114 FMGVAQILLEEL 125
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 30.5 bits (69), Expect = 0.057
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 4 LPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLA--VLRFGVYDENGK----LL 57
+ K+ +T + + LNP YNE F F +V + + V D + +
Sbjct: 55 MQNGKRLKKKKTTIKKNT-LNPYYNES-FSF-EVPFEQIQKVQVVVTVLDYDKIGKNDAI 111
Query: 58 GQRILPLDGLQAGYRH 73
G+ + + A RH
Sbjct: 112 GKVFVGYNSTGAELRH 127
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 29.4 bits (66), Expect = 0.13
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 11 KEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN 53
+ RT+ N LNPV+ E F ++ V DE+
Sbjct: 49 TKKRTKTIYGN-LNPVWEEN---FHFECHNSSDRIKVRVLDED 87
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 29.9 bits (66), Expect = 0.15
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 4 LPTDTIRKEFRTRLCPSNGLNPVYNEEPFLFRKVVLPDLAVLRFGVYDEN 53
+ T + RTR +N +NPV+NE F F + VL + D N
Sbjct: 50 ISTTPDSR-KRTRHF-NNDINPVWNET-FEFI-LDPNQENVLEITLMDAN 95
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.32
Identities = 4/7 (57%), Positives = 5/7 (71%)
Query: 95 LKIYVPD 101
LK+Y D
Sbjct: 29 LKLYADD 35
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: FAD; 2.20A {Bacteroides
thetaiotaomicron} SCOP: b.45.1.1
Length = 178
Score = 26.7 bits (59), Expect = 1.4
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 73 HISLRTEANFPMSLPMLFCNIELKIYV 99
+ + P +PM F +Y+
Sbjct: 42 FVGITDLEGNPYVVPMNFGYENDTLYL 68
>3gf8_A Putative polysaccharide binding proteins (DUF1812; NP_809975.1,
joint center for structural genomics; HET: MSE; 2.20A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 296
Score = 26.5 bits (58), Expect = 1.9
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 49 VYDENGKLLGQRILPLDGLQAGYRHISL 76
V+D+NGK L ++ L G + +
Sbjct: 43 VFDKNGKYLFKQAEEGSALSTGNYLMEV 70
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: CIT; 1.60A {Leishmania major}
Length = 288
Score = 26.0 bits (58), Expect = 2.6
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 47 FGVYD-ENGKLLGQRILPLDGLQAGYRHI 74
GV+ G++ + L AGYRHI
Sbjct: 26 LGVWQSPAGEVTENAVK--WALCAGYRHI 52
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A
{Bacillus subtilis} PDB: 3b3d_A
Length = 310
Score = 26.0 bits (58), Expect = 2.7
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 47 FGVYD-ENGKLLGQRILPLDGLQAGYRHI 74
GV+ ENG + + ++ GYR I
Sbjct: 56 LGVFKVENGNEATESVK--AAIKNGYRSI 82
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 25.6 bits (57), Expect = 3.4
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 16/60 (26%)
Query: 21 NGLNPVYNEEPF------LFRKVVL---PDLAVL------RFGVYDENGKLL-GQRILPL 64
+ L N EP + P AV R GV G ++L
Sbjct: 214 HPLFHGVNPEPIPKNLGVTLAVLGPETPPSFAVATDGDADRVGVVLPGGVFFNPHQVLTT 273
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP
CIT; 2.10A {Trypanosoma brucei}
Length = 281
Score = 25.6 bits (57), Expect = 3.6
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 47 FGVYD-ENGKLLGQRILPLDGLQAGYRHI 74
FG++ ++G + +++GYRHI
Sbjct: 25 FGMWKLQDGNEAETATM--WAIKSGYRHI 51
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A
{Bacillus subtilis} PDB: 3d3f_A*
Length = 276
Score = 25.5 bits (57), Expect = 3.9
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 47 FGVYD-ENGKLLGQRILPLDGLQAGYRHI 74
GV+ ENG + + ++ GYR I
Sbjct: 22 LGVFKVENGNEATESVK--AAIKNGYRSI 48
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics; 2.52A {Thermus thermophilus}
Length = 524
Score = 25.7 bits (57), Expect = 3.9
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 2 YGLPTDTIRKE----FRTRLCPSNG-LNPVYNEEPFLFRKVVLPDLAVL---------RF 47
+GLP + + FR +G + + + + L D L R
Sbjct: 233 HGLPLEVVNPTLDPTFRFMPKDHDGKIRMDCSSPYAMAGLLALKDRFDLAIGNDPDADRH 292
Query: 48 GVYDENGKLLGQRILPL 64
G+ G + L
Sbjct: 293 GIVTPRGLMNPNHYLAA 309
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: NAP;
1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Length = 290
Score = 25.6 bits (57), Expect = 4.0
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 47 FGVYD-ENGKLLGQRILPLDGLQAGYRHI 74
GV+ ++G + ++AGYRHI
Sbjct: 29 LGVWRAQDGAETANAVR--WAIEAGYRHI 55
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A
{Mycobacterium smegmatis} PDB: 2wzt_A
Length = 283
Score = 25.6 bits (57), Expect = 4.1
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 47 FGVYDENGKLLGQRILPLDGLQAGYRHI 74
GV + + + + L+AGYR I
Sbjct: 27 IGVGELSDSEAERSVS--AALEAGYRLI 52
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 25.5 bits (56), Expect = 4.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 31 PFLFRKVVLPDLAVLRFGVYDENG 54
P FR+ V LR G Y+ +
Sbjct: 305 PLPFREEVYRSSRPLRVGYYETDN 328
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel,
aldo-ketoreductase, NADPH dependant, BACT targets at
IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP:
c.1.7.1
Length = 296
Score = 25.2 bits (56), Expect = 4.7
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 47 FGVYDENGKLLGQRILPLDGLQAGYRHI 74
GV+ + + + I L+ GYR I
Sbjct: 41 LGVWQASNEEVITAIQ--KALEVGYRSI 66
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM
barrel, oxidoreductase; 1.90A {Corynebacterium SP}
SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*
Length = 278
Score = 25.2 bits (56), Expect = 5.6
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 47 FGVYDENGKLLGQRILPLDGLQAGYRHI 74
+GV+ + + + L+ GYRHI
Sbjct: 19 YGVFKVPPADTQRAVE--EALEVGYRHI 44
>3pay_A Putative adhesin; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology, cell adhesion; 2.50A {Bacteroides ovatus}
Length = 314
Score = 25.0 bits (54), Expect = 5.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 49 VYDENGKLLGQRILPLDGLQAGYR 72
V+D + KLL + + + L G R
Sbjct: 42 VFDSDDKLLFTKSVKVAALVGGNR 65
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc,
PSI-biology, structural genomics; 1.96A {Sinorhizobium
meliloti}
Length = 298
Score = 24.8 bits (55), Expect = 6.5
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 64 LDGLQAGYRHI 74
L+ G+RH+
Sbjct: 54 PQALKLGFRHV 64
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography;
1.80A {Brucella melitensis biovar}
Length = 283
Score = 24.8 bits (55), Expect = 6.8
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 47 FGVYDENGKLLGQRILPLDGLQAGYRHI 74
+GV+ + + + L+AGYRHI
Sbjct: 42 YGVWQISNDEAVSAVS--EALKAGYRHI 67
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family;
2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Length = 141
Score = 24.4 bits (54), Expect = 6.9
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 36 KVVLPDLAVLRFGVYDENGKLLGQRILPLDGLQAGYRHISLRT 78
+ D L +++ +I ++G+ I L
Sbjct: 105 VIWAKDGEDLA--------EIISNKIGKIEGVTKVCPAIILEK 139
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural
genomics, joint center for structural genomics, JCSG,
protein structure initiative, PSI-2; HET: MLY MSE NAD;
1.18A {Mus musculus}
Length = 324
Score = 24.9 bits (54), Expect = 7.1
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 67 LQAGYRHI 74
L GYRH+
Sbjct: 43 LDVGYRHV 50
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase,
oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB:
2bgq_A* 2vdg_A*
Length = 344
Score = 24.5 bits (54), Expect = 9.2
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 67 LQAGYRHI 74
+AGYRH+
Sbjct: 71 TEAGYRHV 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.147 0.452
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,738,123
Number of extensions: 94765
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 80
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)