BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16206
(821 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 161/582 (27%), Positives = 282/582 (48%), Gaps = 65/582 (11%)
Query: 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNA 60
++I G+F ++ +AF + + + + + L P + ++E +S C+
Sbjct: 3 IQIGGLFPRGADQEYSAFRVGMVQFS------TSEFRLTPHIDNLEVANSFAVTNAFCSQ 56
Query: 61 TSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLI 120
S G+ AIFG ++ N I S C HV +F P+ PT+G H + L
Sbjct: 57 FSRGVYAIFGFYDKKSVNTITSFCGTL---HV-SFITPS---FPTDGTHPFVIQMRPDLK 109
Query: 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTD 180
+S +I WD F +Y++ L LQ VL++A + ++ ++ + + D
Sbjct: 110 GALLS-LIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQV----TAINVGNINNDKK 164
Query: 181 D--YRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEV--HLMGDYQNYILSLTSYWINA 236
D YR L ++++ E ++LDC DK I+ Q + H+ G +YI++ +
Sbjct: 165 DETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKG--YHYIIANLGF---- 218
Query: 237 HTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGW-IYEENERGRSLNVRAETVKIEAAL 295
D Q G A ++ ++++ + + + W EE E T+K +AL
Sbjct: 219 TDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYP---GAHTATIKYTSAL 275
Query: 296 MYDAVYLFAAALQSLGERK----PLPTPLSC-ENPS-SWQHGLGIGNLMKSITIDGMTGR 349
YDAV + A ++L +++ C NP+ W G+ I +K + ++G++G
Sbjct: 276 TYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGN 335
Query: 350 INLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHSRTVEQM--DKEKKEKIENRT 407
I D Q G+R ++++ +E ++ + +G W+ V++M ++ +E +T
Sbjct: 336 IKFD-QNGKRINYTINIMELKTNGPRKIGYWSE---------VDKMVLTEDDTSGLEQKT 385
Query: 408 LTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLE 461
+ VT+ PY+M L G Y VDL IA F YK +
Sbjct: 386 VVVTT---------ILESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIV 436
Query: 462 RENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYR 521
+ YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +
Sbjct: 437 GDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIK 496
Query: 522 KPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARIS 563
KP K +P +FSFL+PL++++W+ + AY+GVS++LF ++R S
Sbjct: 497 KPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFS 538
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 52/66 (78%)
Query: 755 AVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGS 814
++S R+V G+WWFFTLI+ISSYTANLAAFLT RM PI++ EDL+K I YG ++ GS
Sbjct: 586 SLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGS 645
Query: 815 TRNFFK 820
T+ FF+
Sbjct: 646 TKEFFR 651
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 66/106 (62%), Gaps = 2/106 (1%)
Query: 573 KNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCD 631
+ S ++++ +M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD
Sbjct: 651 RRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCD 710
Query: 632 LMQVGGLLDSKGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
M+VGG LDSKGYGIA P L A L++ QG +KN
Sbjct: 711 TMKVGGNLDSKGYGIATPKGSSLGT-PVNLAVLKLSEQGLLDKLKN 755
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 672 PYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M L G Y VDL IA F YK + + YG + T WNG+
Sbjct: 395 PYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 454
Query: 726 IGEL 729
+GEL
Sbjct: 455 VGEL 458
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 208/414 (50%), Gaps = 37/414 (8%)
Query: 1 MKIVGIF-----GPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAK 55
++ GIF GP E AF AV IN++ + L P+ L Q + YDS +K
Sbjct: 5 LRFGGIFEYVESGPMGAE-ELAFRFAVNTINRN-RTLLPNTTLTYDTQKINLYDSFEASK 62
Query: 56 LMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTN-GVHGVNVY 114
C+ S G+AAIFGP + N ++S+C +PH++ W K+ + N V++Y
Sbjct: 63 KACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRW---KHQVSDNKDSFYVSLY 119
Query: 115 PESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSV--TI 172
P+ +S+ I ++ W T T++Y+ L+ LQ++++ P R ++ I
Sbjct: 120 PDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIK---------APSRYNLRLKI 170
Query: 173 RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSY 232
RQLP DT D +PLLKE+K E H++ DCS + ILKQA + +M +Y +YI +
Sbjct: 171 RQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALNMSMMTEYYHYIFTT--- 227
Query: 233 WINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLN--VRAETVK 290
++ +D + ++ N+T R++N N + SI+ W E + + + +
Sbjct: 228 -LDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMT 286
Query: 291 IEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRI 350
+AALMYDAV++ + A+Q + + L C W+ G +L+K +G+TGRI
Sbjct: 287 TDAALMYDAVHVVSVAVQQFPQMT--VSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRI 344
Query: 351 NLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHSRTVEQMDKEKKEKIE 404
+ G R F L+ + + + +GTW+ A GLN M + +K K+E
Sbjct: 345 TFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLN-------MTESQKGKLE 391
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 208/414 (50%), Gaps = 37/414 (8%)
Query: 1 MKIVGIF-----GPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAK 55
++ GIF GP E AF AV IN++ + L P+ L Q + YDS +K
Sbjct: 5 LRFGGIFEYVESGPMGAE-ELAFRFAVNTINRN-RTLLPNTTLTYDTQKINLYDSFEASK 62
Query: 56 LMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTN-GVHGVNVY 114
C+ S G+AAIFGP + N ++S+C +PH++ W K+ + N V++Y
Sbjct: 63 KACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRW---KHQVSDNKDSFYVSLY 119
Query: 115 PESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSV--TI 172
P+ +S+ I ++ W T T++Y+ L+ LQ++++ P R ++ I
Sbjct: 120 PDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKA---------PSRYNLRLKI 170
Query: 173 RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSY 232
RQLP DT D +PLLKE+K E H++ DCS + ILKQA + +M +Y +YI +
Sbjct: 171 RQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTT--- 227
Query: 233 WINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLN--VRAETVK 290
++ +D + ++ N+T R++N N + SI+ W E + + + +
Sbjct: 228 -LDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMT 286
Query: 291 IEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRI 350
+AALMYDAV++ + A+Q + + L C W+ G +L+K +G+TGRI
Sbjct: 287 TDAALMYDAVHVVSVAVQQFPQMT--VSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRI 344
Query: 351 NLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHSRTVEQMDKEKKEKIE 404
+ G R F L+ + + + +GTW+ A GLN M + +K K+E
Sbjct: 345 TFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLN-------MTESQKGKLE 391
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 203/404 (50%), Gaps = 41/404 (10%)
Query: 1 MKIVGIF----GPNEEEVAT---AFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHT 53
++I GIF GPN + + AF + IN++ + L P+ L +Q + +DS
Sbjct: 5 IRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRN-RTLLPNTTLTYDIQRIHFHDSFEA 63
Query: 54 AKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNV 113
K C+ + G+ AIFGP N ++S+C ++PH++ W + + VN+
Sbjct: 64 TKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRW--KHHPLDNKDTFYVNL 121
Query: 114 YPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSV--T 171
YP+ +S I ++ + W + T++Y+ L+ LQ+++ + P R ++
Sbjct: 122 YPDYASLSHAILDLVQSLKWRSATVVYDDSTGLIRLQELI---------MAPSRYNIRLK 172
Query: 172 IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231
IRQLP D+DD RPLLKE+K E I+ DCS ILKQA + +M +Y ++I +
Sbjct: 173 IRQLPIDSDDSRPLLKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMMTEYYHFIFTT-- 230
Query: 232 YWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAET--- 288
++ + +D + ++ N+T R++N NPH+ +I+ W E + RAE+
Sbjct: 231 --LDLYALDLEPYRYSGVNLTGFRILNVDNPHVSAIVEKWSMERLQAA----PRAESGLL 284
Query: 289 ---VKIEAALMYDAVYLFAAALQSLGERKPLPT--PLSCENPSSWQHGLGIGNLMKSITI 343
+ +AAL+YDAV++ + Q R P T L C +W+ G N +K
Sbjct: 285 DGVMMTDAALLYDAVHIVSVCYQ----RAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQW 340
Query: 344 DGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLN 387
+G+TGRI + +G R F L+ + D + +G W+ A GLN
Sbjct: 341 EGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLN 384
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 175 bits (444), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 160/293 (54%), Gaps = 35/293 (11%)
Query: 401 EKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNF 454
+ + NR+L VT+ EPY++ LYG Y +DL++ ++ L F
Sbjct: 8 DSLSNRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGF 58
Query: 455 TYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTL 514
TY+ L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTL
Sbjct: 59 TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTL 118
Query: 515 GISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSA-- 572
GISILYRKP P +FSFL S + + + ++ +++ Y A
Sbjct: 119 GISILYRKPNGTNPGVFSFLNGGSL-----VPRGSERMESPIDSADDLAKQTKIEYGAVE 173
Query: 573 --------KNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY 624
K S +S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+
Sbjct: 174 DGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEF 231
Query: 625 EVEKNCDLMQVGGLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
++NC+L Q+GGL+DSKGYG+ P S + K + A L++ +G+ +MMK
Sbjct: 232 VTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKIT--IAILQLQEEGKLHMMK 282
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 22/166 (13%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 23 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNG 82
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAF- 783
++ EL + V E V M +++ N F
Sbjct: 83 MVRELIDH------KADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFS 136
Query: 784 ---------LTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
+ RM PI + +DLAK +I+YG VE G+T FFK
Sbjct: 137 FLNGGSLVPRGSERMESPIDSADDLAKQTKIEYGAVEDGATMTFFK 182
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 148/281 (52%), Gaps = 44/281 (15%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ EPY++ LYG Y +DL++ ++ L FTY+
Sbjct: 3 NRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEI 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTLGISI
Sbjct: 54 RLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISI 113
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 114 LYRKGTPIDSADD-------LAKQTKIEYGAVEDGATMTFF---------------KRSK 151
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+ ++NC+L Q+G
Sbjct: 152 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + KL+ QG+ +MMK
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQE--QGKLHMMK 248
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 29/157 (18%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 14 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNG 73
Query: 725 LIGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAF 783
++ EL + D ++ F TL + Y
Sbjct: 74 MVRELIDHKADLAVAPLAITYVREEVIDFSKP-----------FMTLGISILY------- 115
Query: 784 LTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG VE G+T FFK
Sbjct: 116 ----RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK 148
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 148/281 (52%), Gaps = 44/281 (15%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ EPY++ LYG Y +DL++ ++ L FTY+
Sbjct: 3 NRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEI 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTLGISI
Sbjct: 54 RLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISI 113
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 114 LYRKGTPIDSADD-------LAKQTKIEYGAVEDGATMTFF---------------KKSK 151
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+ ++NC+L Q+G
Sbjct: 152 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + KL+ +G+ +MMK
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQE--EGKLHMMK 248
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 29/157 (18%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 14 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNG 73
Query: 725 LIGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAF 783
++ EL + D ++ F TL + Y
Sbjct: 74 MVRELIDHKADLAVAPLAITYVREEVIDFSKP-----------FMTLGISILY------- 115
Query: 784 LTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG VE G+T FFK
Sbjct: 116 ----RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK 148
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 148/281 (52%), Gaps = 44/281 (15%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ EPY++ LYG Y +DL++ ++ L FTY+
Sbjct: 3 NRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEI 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTLGISI
Sbjct: 54 RLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISI 113
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 114 LYRKGTPIDSADD-------LAKQTKIEYGAVEDGATMTFF---------------KKSK 151
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+ ++NC+L Q+G
Sbjct: 152 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + KL+ QG+ +MMK
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQE--QGKLHMMK 248
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 29/157 (18%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 14 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNG 73
Query: 725 LIGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAF 783
++ EL + D ++ F TL + Y
Sbjct: 74 MVRELIDHKADLAVAPLAITYVREEVIDFSKP-----------FMTLGISILY------- 115
Query: 784 LTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG VE G+T FFK
Sbjct: 116 ----RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK 148
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 148/281 (52%), Gaps = 44/281 (15%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ EPY++ LYG Y +DL++ ++ L FTY+
Sbjct: 3 NRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEI 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTLGISI
Sbjct: 54 RLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISI 113
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 114 LYRKGTPIDSADD-------LAKQTKIEYGAVEDGATMTFF---------------KRSK 151
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+ ++NC+L Q+G
Sbjct: 152 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + KL+ +G+ +MMK
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQE--EGKLHMMK 248
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 29/157 (18%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 14 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNG 73
Query: 725 LIGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAF 783
++ EL + D ++ F TL + Y
Sbjct: 74 MVRELIDHKADLAVAPLAITYVREEVIDFSKP-----------FMTLGISILY------- 115
Query: 784 LTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG VE G+T FFK
Sbjct: 116 ----RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK 148
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 148/281 (52%), Gaps = 44/281 (15%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ EPY++ LYG Y +DL++ ++ L FTY+
Sbjct: 3 NRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEI 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTLGISI
Sbjct: 54 RLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITCVREKVIDFSKPFMTLGISI 113
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 114 LYRKGTPIDSADD-------LAKQTKIEYGAVEDGATMTFF---------------KKSK 151
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+ ++NC+L Q+G
Sbjct: 152 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + +L+ +G+ +MMK
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITIAICQLQE--EGKLHMMK 248
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 27/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 14 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNG 73
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL + V +++ F TL + Y
Sbjct: 74 MVRELIDH----------KADLAVAPLAITCVREKVIDFSKPFMTLGISILY-------- 115
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG VE G+T FFK
Sbjct: 116 ---RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK 148
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 148/281 (52%), Gaps = 44/281 (15%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ EPY++ LYG Y +DL++ ++ L FTY+
Sbjct: 3 NRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEI 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTLGISI
Sbjct: 54 RLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISI 113
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 114 LYRKGTPIDSADD-------LAKQTKIEYGAVEDGATMTFF---------------KRSK 151
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+ ++NC+L Q+G
Sbjct: 152 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + KL+ +G+ +MMK
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQE--EGKLHMMK 248
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 27/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 14 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNG 73
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL +D V +++ F TL + Y
Sbjct: 74 MVREL---IDHKADLAVAPLAITY-------VREKVIDFSKPFMTLGISILY-------- 115
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG VE G+T FFK
Sbjct: 116 ---RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK 148
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 148/281 (52%), Gaps = 44/281 (15%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ EPY++ LYG Y +DL++ ++ L FTY+
Sbjct: 2 NRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEI 52
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTLGISI
Sbjct: 53 RLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISI 112
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 113 LYRKGTPIDSADD-------LAKQTKIEYGAVEDGATMTFF---------------KKSK 150
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+ ++NC+L Q+G
Sbjct: 151 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEFVTQRNCNLTQIG 208
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + +L+ +G+ +MMK
Sbjct: 209 GLIDSKGYGVGTPMGSPYRDKITIAILQLQE--EGKLHMMK 247
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 27/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 13 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNG 72
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL +D V +++ F TL + Y
Sbjct: 73 MVREL---IDHKADLAVAPLAITY-------VREKVIDFSKPFMTLGISILY-------- 114
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG VE G+T FFK
Sbjct: 115 ---RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK 147
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 148/281 (52%), Gaps = 44/281 (15%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ EPY++ LYG Y +DL++ ++ L FTY+
Sbjct: 3 NRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEI 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTLGISI
Sbjct: 54 RLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISI 113
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 114 LYRKGTPIDSADD-------LAKQTKIEYGAVEDGATMTFF---------------KKSK 151
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+ ++NC+L Q+G
Sbjct: 152 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + +L+ +G+ +MMK
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITIAILQLQE--EGKLHMMK 248
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 27/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 14 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNG 73
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL +D V +++ F TL + Y
Sbjct: 74 MVREL---IDHKADLAVAPLAITY-------VREKVIDFSKPFMTLGISILY-------- 115
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG VE G+T FFK
Sbjct: 116 ---RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK 148
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 148/281 (52%), Gaps = 44/281 (15%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ EPY++ LYG Y +DL++ ++ L FTY+
Sbjct: 3 NRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEI 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTLGISI
Sbjct: 54 RLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISI 113
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 114 LYRKGTPIDSADD-------LAKQTKIEYGAVEDGATMTFF---------------KKSK 151
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+ ++NC+L Q+G
Sbjct: 152 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + +L+ +G+ +MMK
Sbjct: 210 GLIDSKGYGVGTPMGSPYRKKITIAILQLQE--EGKLHMMK 248
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 27/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 14 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNG 73
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL +D V +++ F TL + Y
Sbjct: 74 MVREL---IDHKADLAVAPLAITY-------VREKVIDFSKPFMTLGISILY-------- 115
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG VE G+T FFK
Sbjct: 116 ---RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK 148
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 148/281 (52%), Gaps = 44/281 (15%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ EPY++ LYG Y +DL++ ++ L FTY+
Sbjct: 3 NRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEI 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTLGISI
Sbjct: 54 RLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISI 113
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 114 LYRKGTPIDSADD-------LAKQTKIEYGAVEDGATMTFF---------------KRSK 151
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+ ++NC+L Q+G
Sbjct: 152 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + +L+ +G+ +MMK
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITIAILQLQE--EGKLHMMK 248
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 27/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 14 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNG 73
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL +D V +++ F TL + Y
Sbjct: 74 MVREL---IDHKADLAVAPLAITY-------VREKVIDFSKPFMTLGISILY-------- 115
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG VE G+T FFK
Sbjct: 116 ---RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK 148
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 148/281 (52%), Gaps = 44/281 (15%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ EPY++ LYG Y +DL++ ++ L FTY+
Sbjct: 3 NRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEI 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTLGISI
Sbjct: 54 RLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISI 113
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 114 LYRKGTPIDSADD-------LAKQTKIEYGAVEDGATMTFF---------------KKSK 151
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+ ++NC+L Q+G
Sbjct: 152 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + +L+ +G+ +MMK
Sbjct: 210 GLIDSKGYGVGTPKGSPYRDKITIAILQLQE--EGKLHMMK 248
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 27/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 14 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNG 73
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL +D V +++ F TL + Y
Sbjct: 74 MVREL---IDHKADLAVAPLAITY-------VREKVIDFSKPFMTLGISILY-------- 115
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG VE G+T FFK
Sbjct: 116 ---RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK 148
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 148/281 (52%), Gaps = 44/281 (15%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ EPY++ LYG Y +DL++ ++ L FTY+
Sbjct: 3 NRSLIVTT---------ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEI 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + G+WNG++ EL + +ADLA+ L IT R +DF+ PFMTLGISI
Sbjct: 54 RLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISI 113
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 114 LYRKGTPIDSADD-------LAKQTKIEYGAVEDGATMTFF---------------KKSK 151
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y +M + M S R SV VKSN+EG++RV+ YAF MEST IE+ ++NC+L Q+G
Sbjct: 152 ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTS--DYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + +L+ +G+ +MMK
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITIAILQLQE--EGKLHMMK 248
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 27/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY++ LYG Y +DL++ ++ L FTY+ L + YG + G+WNG
Sbjct: 14 EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNG 73
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL +D V +++ F TL + Y
Sbjct: 74 MVREL---IDHKADLAVAPLAITY-------VREKVIDFSKPFMTLGISILY-------- 115
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG VE G+T FFK
Sbjct: 116 ---RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK 148
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 148/276 (53%), Gaps = 21/276 (7%)
Query: 403 IENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLER 462
+EN+T+ VT+ V+ + M++ E E GY VDL IA F YK +
Sbjct: 13 LENKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVG 69
Query: 463 ENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK 522
+ YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 70 DGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKK 129
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + S E LS + T + SGS + + S ++++ +
Sbjct: 130 PGTDGNPIES-AEDLSKQTEIAYGT--------------LDSGSTKEF-FRRSKIAVFDK 173
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 174 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 233
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 234 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 268
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 25/156 (16%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 27 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 86
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI +
Sbjct: 87 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKPGTD----- 133
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 134 -----GNPIESAEDLSKQTEIAYGTLDSGSTKEFFR 164
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 147/281 (52%), Gaps = 45/281 (16%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NRTL VT+ EPY+M LYG Y +DL+K ++N L F Y
Sbjct: 3 NRTLIVTT---------ILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDV 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG N + G+WNG++ EL + RADLA+ LTIT R +DF+ PFMTLGISI
Sbjct: 54 KLVPDGKYGAQNDK-GEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISI 112
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 113 LYRKGTPIDSADD-------LAKQTKIEYGAVRDGSTMTFF---------------KKSK 150
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y++M + M S + S VK++ EG++RV+ YA MEST IEY ++NC+L Q+G
Sbjct: 151 ISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTT--DYALLMESTSIEYVTQRNCNLTQIG 208
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + +L+ +G+ +MMK
Sbjct: 209 GLIDSKGYGVGTPIGSPYRDKITIAILQLQE--EGKLHMMK 247
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 67/156 (42%), Gaps = 28/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY+M LYG Y +DL+K ++N L F Y L + YG N + G+WNG
Sbjct: 14 EPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDK-GEWNG 72
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL +D V +++ F TL + Y
Sbjct: 73 MVKEL---IDHRADLAVAPLTITY-------VREKVIDFSKPFMTLGISILY-------- 114
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG V GST FFK
Sbjct: 115 ---RKGTPIDSADDLAKQTKIEYGAVRDGSTMTFFK 147
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 147/281 (52%), Gaps = 45/281 (16%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NRTL VT+ EPY+M LYG Y +DL+K ++N L F Y
Sbjct: 3 NRTLIVTT---------ILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDV 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG N + G+WNG++ EL + RADLA+ LTIT R +DF+ PFMTLGISI
Sbjct: 54 KLVPDGKYGAQNDK-GEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISI 112
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 113 LYRKGTPIDSADD-------LAKQTKIEYGAVRDGSTMTFF---------------KKSK 150
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y++M + M S + S VK++ EG++RV+ YA MEST IEY ++NC+L Q+G
Sbjct: 151 ISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTT--DYALLMESTSIEYVTQRNCNLTQIG 208
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + +L+ +G+ +MMK
Sbjct: 209 GLIDSKGYGVGTPIGSPYRDKITIAILQLQE--EGKLHMMK 247
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 67/156 (42%), Gaps = 28/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY+M LYG Y +DL+K ++N L F Y L + YG N + G+WNG
Sbjct: 14 EPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDK-GEWNG 72
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL +D V +++ F TL + Y
Sbjct: 73 MVKEL---IDHRADLAVAPLTITY-------VREKVIDFSKPFMTLGISILY-------- 114
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG V GST FFK
Sbjct: 115 ---RKGTPIDSADDLAKQTKIEYGAVRDGSTMTFFK 147
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 147/281 (52%), Gaps = 45/281 (16%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NRTL VT+ EPY+M LYG Y +DL+K ++N L F Y
Sbjct: 3 NRTLIVTT---------ILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDV 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG N + G+WNG++ EL + RADLA+ LTIT R +DF+ PFMTLGISI
Sbjct: 54 KLVPDGKYGAQNDK-GEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISI 112
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 113 LYRKGTPIDSADD-------LAKQTKIEYGAVRDGSTMTFF---------------KKSK 150
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y++M + M S + S VK++ EG++RV+ YA MEST IEY ++NC+L Q+G
Sbjct: 151 ISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTT--DYALLMESTSIEYVTQRNCNLTQIG 208
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + +L+ +G+ +MMK
Sbjct: 209 GLIDSKGYGVGTPIGSPYRDKITIAILQLQE--EGKLHMMK 247
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 67/156 (42%), Gaps = 28/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY+M LYG Y +DL+K ++N L F Y L + YG N + G+WNG
Sbjct: 14 EPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDK-GEWNG 72
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL +D V +++ F TL + Y
Sbjct: 73 MVKEL---IDHRADLAVAPLTITY-------VREKVIDFSKPFMTLGISILY-------- 114
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG V GST FFK
Sbjct: 115 ---RKGTPIDSADDLAKQTKIEYGAVRDGSTMTFFK 147
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 147/281 (52%), Gaps = 45/281 (16%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NRTL VT+ EPY+M LYG Y +DL+K ++N L F Y
Sbjct: 3 NRTLIVTT---------ILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDV 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG N + G+WNG++ EL + RADLA+ LTIT R +DF+ PFMTLGISI
Sbjct: 54 KLVPDGKYGAQNDK-GEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISI 112
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 113 LYRKGTPIDSADD-------LAKQTKIEYGAVRDGSTMTFF---------------KKSK 150
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y++M + M S + S VK++ EG++RV+ YA MEST IEY ++NC+L Q+G
Sbjct: 151 ISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTT--DYALLMESTSIEYVTQRNCNLTQIG 208
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + +L+ +G+ +MMK
Sbjct: 209 GLIDSKGYGVGTPIGSPYRDKITIAILQLQE--EGKLHMMK 247
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 67/156 (42%), Gaps = 28/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY+M LYG Y +DL+K ++N L F Y L + YG N + G+WNG
Sbjct: 14 EPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDK-GEWNG 72
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL +D V +++ F TL + Y
Sbjct: 73 MVKEL---IDHRADLAVAPLTITY-------VREKVIDFSKPFMTLGISILY-------- 114
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG V GST FFK
Sbjct: 115 ---RKGTPIDSADDLAKQTKIEYGAVRDGSTMTFFK 147
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 143/261 (54%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA + YK + + YG +P+T WNG+
Sbjct: 12 PYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL RAD+A+ LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLAKQTE-- 129
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY ++SGS + + S +++Y++M S M+S+ PSVF K
Sbjct: 130 ---------IAY----------GTLASGSTKEF-FRRSKIAVYEKMWSYMKSAEPSVFTK 169
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ +GV RV K KGK+AF +EST EY E K CD M+VGG LDSKGYG+A P L
Sbjct: 170 TTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGN 229
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
+ A L++ QG +KN
Sbjct: 230 -AVNLAVLKLNEQGLLDKLKN 249
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA + YK + + YG +P+T WNG+
Sbjct: 12 PYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 116
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDLAK I YG + GST+ FF+
Sbjct: 117 -------PIESAEDLAKQTEIAYGTLASGSTKEFFR 145
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 147/281 (52%), Gaps = 45/281 (16%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NRTL VT+ EPY+M LYG Y +DL+K ++N L F Y
Sbjct: 2 NRTLIVTT---------ILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFIYDV 52
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG N + G+WNG++ EL + RADLA+ LTIT R +DF+ PFMTLGISI
Sbjct: 53 KLVPDGKYGAQNDK-GEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISI 111
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 112 LYRKGTPIDSADD-------LAKQTKIEYGAVRDGSTMTFF---------------KKSK 149
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S Y++M + M S + + V+++ EG++RV+ YA MEST IEY ++NC+L Q+G
Sbjct: 150 ISTYEKMWAFMSSRQQTALVRNSDEGIQRVLTT--DYALLMESTSIEYVTQRNCNLTQIG 207
Query: 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMK 676
GL+DSKGYG+ P S + K + +L+ +G+ +MMK
Sbjct: 208 GLIDSKGYGVGTPIGSPYRDKITIAILQLQE--EGKLHMMK 246
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 67/156 (42%), Gaps = 28/156 (17%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY+M LYG Y +DL+K ++N L F Y L + YG N + G+WNG
Sbjct: 13 EPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDK-GEWNG 71
Query: 725 LIGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
++ EL +D V +++ F TL + Y
Sbjct: 72 MVKEL---IDHRADLAVAPLTITY-------VREKVIDFSKPFMTLGISILY-------- 113
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG V GST FFK
Sbjct: 114 ---RKGTPIDSADDLAKQTKIEYGAVRDGSTMTFFK 146
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 142/261 (54%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA + YK + + YG +P+T WNG+
Sbjct: 12 PYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL RAD+A+ LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLAKQTE-- 129
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S +++Y++M S M+S+ PSVF K
Sbjct: 130 ---------IAY----------GTLDSGSTKEF-FRRSKIAVYEKMWSYMKSAEPSVFTK 169
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ +GV RV K KGK+AF +EST EY E K CD M+VGG LDSKGYG+A P L
Sbjct: 170 TTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGN 229
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
+ A L++ QG +KN
Sbjct: 230 -AVNLAVLKLNEQGLLDKLKN 249
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA + YK + + YG +P+T WNG+
Sbjct: 12 PYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 116
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDLAK I YG ++ GST+ FF+
Sbjct: 117 -------PIESAEDLAKQTEIAYGTLDSGSTKEFFR 145
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 148/282 (52%), Gaps = 41/282 (14%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKF 458
NRT+ VT+ PY+M KN E E Y GY VDL IA + YK
Sbjct: 19 NRTIVVTT---------ILESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKL 69
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
+ + YG +P+T WNG++GEL RAD+A+ LTIT R +DF+ PFM+LGISI
Sbjct: 70 SIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISI 129
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
+ +K P + DL E AY + SGS + + S
Sbjct: 130 MIKKGTPIESAEDLAKQTE-----------IAY----------GTLDSGSTKEF-FRRSK 167
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQV 635
+++Y++M S M+S+ PSVF K+ +GV RV K KGK+AF +EST EY E K CD M+V
Sbjct: 168 IAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKV 227
Query: 636 GGLLDSKGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
GG LDSKGYG+A P L A L++ QG +KN
Sbjct: 228 GGNLDSKGYGVATPKGSALGT-PVNLAVLKLSEQGILDKLKN 268
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA + YK + + YG +P+T WNG+
Sbjct: 31 PYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGM 90
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 91 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 135
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDLAK I YG ++ GST+ FF+
Sbjct: 136 -------PIESAEDLAKQTEIAYGTLDSGSTKEFFR 164
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 141/261 (54%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA + YK + + YG +P+T WNG+
Sbjct: 12 PYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL RAD+A+ LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLAKQTE-- 129
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S +++Y++M S M+S+ PSVF K
Sbjct: 130 ---------IAY----------GTLDSGSTAEF-FRRSKIAVYEKMWSYMKSAEPSVFTK 169
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ +GV RV K KGK+AF +EST EY E K CD M+VGG LDSKGYG+A P L
Sbjct: 170 TTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGT 229
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
A L++ QG +KN
Sbjct: 230 -PVNLAVLKLSEQGILDKLKN 249
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA + YK + + YG +P+T WNG+
Sbjct: 12 PYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 116
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDLAK I YG ++ GST FF+
Sbjct: 117 -------PIESAEDLAKQTEIAYGTLDSGSTAEFFR 145
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 140/253 (55%), Gaps = 43/253 (16%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ L + EP++M LYG Y +DL+K +A+ L F+Y+
Sbjct: 3 NRSLIVTT--------LLE-EPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEI 53
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + + G+WNG++ EL + +ADLA+ LTIT R A+DF+ PFMTLG+SI
Sbjct: 54 RLVEDGKYGAQDDK-GQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSI 112
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 113 LYRKGTPIDSADD-------LAKQTKIEYGAVKDGATMTFF---------------KKSK 150
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S +++M + M SS+PS VK+N+EG++R + YA MEST IEY ++NC+L Q+G
Sbjct: 151 ISTFEKMWAFM-SSKPSALVKNNEEGIQRTL--TADYALLMESTTIEYITQRNCNLTQIG 207
Query: 637 GLLDSKGYGIAMP 649
GL+DSKGYGI P
Sbjct: 208 GLIDSKGYGIGTP 220
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 30/157 (19%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EP++M LYG Y +DL+K +A+ L F+Y+ L + YG + + G+WNG
Sbjct: 14 EPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDK-GQWNG 72
Query: 725 LIGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAF 783
++ EL + D ++ T V+ ++
Sbjct: 73 MVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILY------------------ 114
Query: 784 LTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG V+ G+T FFK
Sbjct: 115 ----RKGTPIDSADDLAKQTKIEYGAVKDGATMTFFK 147
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 141/261 (54%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA + YK + + YG +P+T WNG+
Sbjct: 12 PYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL RAD+A+ LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLAKQTE-- 129
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S +++Y++M S M+S+ PSVF K
Sbjct: 130 ---------IAY----------GTLDSGSTKEF-FRRSKIAVYEKMWSYMKSAEPSVFTK 169
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ +GV RV K KGK+AF +EST EY E K CD M+VGG LDSKGYG+A P L
Sbjct: 170 TTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGT 229
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
A L++ QG +KN
Sbjct: 230 -PVNLAVLKLSEQGILDKLKN 249
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA + YK + + YG +P+T WNG+
Sbjct: 12 PYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 116
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDLAK I YG ++ GST+ FF+
Sbjct: 117 -------PIESAEDLAKQTEIAYGTLDSGSTKEFFR 145
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 146/277 (52%), Gaps = 29/277 (10%)
Query: 404 ENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERE 463
EN+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 1 ENKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGD 57
Query: 464 NTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 58 GKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKG 117
Query: 523 -PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQ 581
P + DL E AY + SGS + + S ++++
Sbjct: 118 TPIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFD 155
Query: 582 RMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLD 640
+M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LD
Sbjct: 156 KMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLD 215
Query: 641 SKGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
SKGYGIA P L + A L++ QG +KN
Sbjct: 216 SKGYGIATPKGSSL-RTPVNLAVLKLSEQGVLDKLKN 251
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 14 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 73
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 74 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 118
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 119 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 147
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 140/253 (55%), Gaps = 43/253 (16%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYG------YSVDLIKMIANELNFTYKF 458
NR+L VT+ L + EP++M LYG Y +DL+K +A+ L F+Y+
Sbjct: 5 NRSLIVTT--------LLE-EPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEI 55
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
L + YG + + G+WNG++ EL + +ADLA+ LTIT R A+DF+ PFMTLG+SI
Sbjct: 56 RLVEDGKYGAQDDK-GQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSI 114
Query: 519 LYRK--PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSN 576
LYRK P D L+ + G ++ F K S
Sbjct: 115 LYRKGTPIDSADD-------LAKQTKIEYGAVKDGATMTFF---------------KKSK 152
Query: 577 VSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636
+S +++M + M SS+PS VK+N+EG++R + YA MEST IEY ++NC+L Q+G
Sbjct: 153 ISTFEKMWAFM-SSKPSALVKNNEEGIQRTL--TADYALLMESTTIEYITQRNCNLTQIG 209
Query: 637 GLLDSKGYGIAMP 649
GL+DSKGYGI P
Sbjct: 210 GLIDSKGYGIGTP 222
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 30/157 (19%)
Query: 671 EPYMMKNPETGELYG------YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EP++M LYG Y +DL+K +A+ L F+Y+ L + YG + + G+WNG
Sbjct: 16 EPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDK-GQWNG 74
Query: 725 LIGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAF 783
++ EL + D ++ T V+ ++
Sbjct: 75 MVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILY------------------ 116
Query: 784 LTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
R PI + +DLAK +I+YG V+ G+T FFK
Sbjct: 117 ----RKGTPIDSADDLAKQTKIEYGAVKDGATMTFFK 149
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 139/261 (53%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTE-- 132
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S ++++ +M + M S+ PSVFV+
Sbjct: 133 ---------IAY----------GTLDSGSTKEF-FRRSKIAVFDKMWTYMRSAEPSVFVR 172
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ EGV RV K KGKYAF +EST EY E K CD M+VGG LDSKGYGIA P L
Sbjct: 173 TTAEGVARVRKSKGKYAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGN 232
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
+ A L++ QG +KN
Sbjct: 233 -AVNLAVLKLNEQGLLDKLKN 252
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 145/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGN-AVNLAVLKLSEQGLLDKLKN 252
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 139/261 (53%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEALEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTE-- 132
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S ++++ +M + M S+ PSVFV+
Sbjct: 133 ---------IAY----------GTLDSGSTKEF-FRRSKIAVFDKMWTYMRSAEPSVFVR 172
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDSKGYGIA P L
Sbjct: 173 TTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGN 232
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
+ A L++ QG +KN
Sbjct: 233 -AVNLAVLKLNEQGLLDKLKN 252
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEALEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 145/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGN-AVNLAVLKLSEQGLLDKLKN 252
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 139/261 (53%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 12 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 71
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 72 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTE-- 129
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S ++++ +M + M S+ PSVFV+
Sbjct: 130 ---------IAY----------GTLDSGSTKEF-FRRSKIAVFDKMWTYMRSAEPSVFVR 169
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDSKGYGIA P L
Sbjct: 170 TTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGN 229
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
+ A L++ QG +KN
Sbjct: 230 -AVNLAVLKLSEQGLLDKLKN 249
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 12 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 71
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 72 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 116
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 117 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 145
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 146/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV+++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTSAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 252
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 145/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 252
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 155 bits (392), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 139/261 (53%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 44 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 103
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 104 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTE-- 161
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S ++++ +M + M S+ PSVFV+
Sbjct: 162 ---------IAY----------GTLDSGSTKEF-FRRSKIAVFDKMWTYMRSAEPSVFVR 201
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDSKGYGIA P L
Sbjct: 202 TTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGN 261
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
+ A L++ QG +KN
Sbjct: 262 -AVNLAVLKLSEQGLLDKLKN 281
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 44 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 103
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 104 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 148
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 149 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 177
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 155 bits (392), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 145/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 252
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 155 bits (392), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 145/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGN-AVNLAVLKLDEQGLLDKLKN 252
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 155 bits (392), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 145/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 2 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 58
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 59 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 118
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 119 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 156
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 157 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 216
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 217 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 251
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 14 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 73
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 74 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 118
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 119 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 147
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 139/261 (53%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 12 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 71
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 72 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTE-- 129
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S ++++ +M + M S+ PSVFV+
Sbjct: 130 ---------IAY----------GTLDSGSTKEF-FRRSKIAVFDKMWTYMRSAEPSVFVR 169
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDSKGYGIA P L
Sbjct: 170 TTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGN 229
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
+ A L++ QG +KN
Sbjct: 230 -AVNLAVLKLNEQGLLDKLKN 249
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 12 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 71
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 72 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 116
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 117 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 145
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 145/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSL-RTPVNLAVLKLSEQGVLDKLKN 252
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 145/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 252
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 139/261 (53%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 31 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 90
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 91 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTE-- 148
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S ++++ +M + M S+ PSVFV+
Sbjct: 149 ---------IAY----------GTLDSGSTKEF-FRRSKIAVFDKMWTYMRSAEPSVFVR 188
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDSKGYGIA P L
Sbjct: 189 TTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGN 248
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
+ A L++ QG +KN
Sbjct: 249 -AVNLAVLKLNEQGLLDKLKN 268
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 31 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 90
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 91 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 135
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 136 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 164
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 145/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 1 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 57
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 58 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 117
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 118 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 155
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 156 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 215
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 216 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 250
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 13 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 72
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 73 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 117
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 118 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 146
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 139/261 (53%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 16 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 75
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 76 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTE-- 133
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S ++++ +M + M S+ PSVFV+
Sbjct: 134 ---------IAY----------GTLDSGSTKEF-FRRSKIAVFDKMWTYMRSAEPSVFVR 173
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDSKGYGIA P L
Sbjct: 174 TTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGN 233
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
+ A L++ QG +KN
Sbjct: 234 -AVNLAVLKLNEQGLLDKLKN 253
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 16 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 75
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 76 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 120
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 121 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 149
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 139/261 (53%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 28 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 87
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 88 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTE-- 145
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S ++++ +M + M S+ PSVFV+
Sbjct: 146 ---------IAY----------GTLDSGSTKEF-FRRSKIAVFDKMWTYMRSAEPSVFVR 185
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDSKGYGIA P L
Sbjct: 186 TTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGN 245
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
+ A L++ QG +KN
Sbjct: 246 -AVNLAVLKLNEQGLLDKLKN 265
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 28 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 87
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 88 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 132
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 133 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 161
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 144/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGT-PVNLAVLKLSEQGVLDKLKN 252
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 146/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSL-RNAVNLAVLKLNEQGLLDKLKN 252
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 144/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGT-PVNLAVLKLSEQGVLDKLKN 252
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 145/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTAAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 252
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 136/259 (52%), Gaps = 28/259 (10%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 12 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 71
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSF 539
+GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K + E LS
Sbjct: 72 VGELVYGKADIAIAPLTITLCREEVIDFSKPFMSLGISIMIKKGTPIES-----AEDLSK 126
Query: 540 DVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSN 599
+ T G + F + S ++++ +M + M S+ PSVFV++
Sbjct: 127 QTEIAYGTLDSGSTKCFF---------------RRSKIAVFDKMWTYMRSAEPSVFVRTT 171
Query: 600 KEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAKFS 658
EGV RV K KGKYA+ +EST EY E K CD M+VGG LDSKGYGIA P L +
Sbjct: 172 AEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGN-A 230
Query: 659 FGFAKLRVLFQGEPYMMKN 677
A L++ QG +KN
Sbjct: 231 VNLAVLKLNEQGLLDKLKN 249
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 12 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 71
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 72 VGELVYGKADIAIAPLTITLCREEVIDFSKPFMSLGIS--------IMIKKGT------- 116
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 117 -------PIESAEDLSKQTEIAYGTLDSGSTKCFFR 145
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 144/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTTDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 252
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 64/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG + GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTTDSGSTKEFFR 148
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 136/259 (52%), Gaps = 28/259 (10%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 12 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGCRDADTKIWNGM 71
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSF 539
+GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K + E LS
Sbjct: 72 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIES-----AEDLSK 126
Query: 540 DVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSN 599
+ T G + F + S ++++ +M + M S+ PSVFV++
Sbjct: 127 QTEIAYGTLDCGSTKEFF---------------RRSKIAVFDKMWTYMRSAEPSVFVRTT 171
Query: 600 KEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAKFS 658
EGV RV K KGKYA+ +EST EY E K CD M+VGG LDSKGYGIA P L +
Sbjct: 172 AEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGN-A 230
Query: 659 FGFAKLRVLFQGEPYMMKN 677
A L++ QG +KN
Sbjct: 231 VNLAVLKLNEQGLLDKLKN 249
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 12 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGCRDADTKIWNGM 71
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 72 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 116
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 117 -------PIESAEDLSKQTEIAYGTLDCGSTKEFFR 145
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 138/261 (52%), Gaps = 32/261 (12%)
Query: 426 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTE-- 132
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY SGS + + S ++++ +M + M S+ PSVFV+
Sbjct: 133 ---------IAY----------GTTDSGSTKEF-FRRSKIAVFDKMWTYMRSAEPSVFVR 172
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAK 656
+ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDSKGYGIA P L
Sbjct: 173 TTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGN 232
Query: 657 FSFGFAKLRVLFQGEPYMMKN 677
+ A L++ QG +KN
Sbjct: 233 -AVNLAVLKLNEQGLLDKLKN 252
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 64/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG + GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTTDSGSTKEFFR 148
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 145/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
+G + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KWGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 252
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + +G + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKWGARDADTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 148
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 144/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 1 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 57
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 58 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 117
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 118 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 155
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LD
Sbjct: 156 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDC 215
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 216 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 250
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 13 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 72
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 73 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 117
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 118 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 146
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 144/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 3 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 59
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 60 KYGARDEDTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + GS + + S ++++ +
Sbjct: 120 PIESAEDLSKQTE-----------IAY----------GTLDDGSTKEF-FRRSKIAVFDK 157
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VGG LDS
Sbjct: 158 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 217
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 218 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 252
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 15 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDEDTKIWNGM 74
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 119
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 120 -------PIESAEDLSKQTEIAYGTLDDGSTKEFFR 148
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 144/276 (52%), Gaps = 29/276 (10%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLEREN 464
N+T+ VT+ V+ + M++ E E GY VDL IA F YK + +
Sbjct: 1 NKTVVVTT-ILESPYVMMKKNHEMLEGNERYE--GYCVDLAAEIAKHCGFKYKLTIVGDG 57
Query: 465 TYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK-- 522
YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI+ +K
Sbjct: 58 KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 117
Query: 523 PAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQR 582
P + DL E AY + SGS + + S ++++ +
Sbjct: 118 PIESAEDLSKQTE-----------IAY----------GTLDSGSTKEF-FRRSKIAVFDK 155
Query: 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDS 641
M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY E K CD M+VG LDS
Sbjct: 156 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGCNLDS 215
Query: 642 KGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKN 677
KGYGIA P L + A L++ QG +KN
Sbjct: 216 KGYGIATPKGSSLGN-AVNLAVLKLNEQGLLDKLKN 250
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 672 PYMM--KNPET---GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E Y GY VDL IA F YK + + YG + T WNG+
Sbjct: 13 PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 72
Query: 726 IGEL-QEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784
+GEL + D ++ + ++ IMI T
Sbjct: 73 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS--------IMIKKGT------- 117
Query: 785 TNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
PI++ EDL+K I YG ++ GST+ FF+
Sbjct: 118 -------PIESAEDLSKQTEIAYGTLDSGSTKEFFR 146
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 128/238 (53%), Gaps = 31/238 (13%)
Query: 426 PYMM--KNPETGE----LYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E GY VDL IA + YK + + YG + T WNG+
Sbjct: 11 PYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGM 70
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL +A++AI LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 71 VGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLAKQTE-- 128
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S +++Y++M + M S+ PSVF +
Sbjct: 129 ---------IAY----------GTVDSGSTKEF-FRRSKIAVYEKMWTYMRSAEPSVFTR 168
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFL 654
+ EGV RV K KGK+AF +EST EY E K CD M+VGG LDSKGYG+A P L
Sbjct: 169 TTAEGVARVRKSKGKFAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSSL 226
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 62/155 (40%), Gaps = 27/155 (17%)
Query: 672 PYMM--KNPETGE----LYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E GY VDL IA + YK + + YG + T WNG+
Sbjct: 11 PYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGM 70
Query: 726 IGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLT 785
+GEL V E V I S +L +
Sbjct: 71 VGEL------VYGKAEIAIAPLTITLVREEV--------------IDFSKPFMSLGISIM 110
Query: 786 NTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
+ PI++ EDLAK I YG V+ GST+ FF+
Sbjct: 111 -IKKGTPIESAEDLAKQTEIAYGTVDSGSTKEFFR 144
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 128/238 (53%), Gaps = 31/238 (13%)
Query: 426 PYMM--KNPETGE----LYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E GY VDL IA + YK + + YG + T WNG+
Sbjct: 11 PYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGM 70
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL +A++AI LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 71 VGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLAKQTE-- 128
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S +++Y++M + M S+ PSVF +
Sbjct: 129 ---------IAY----------GTLDSGSTKEF-FRRSKIAVYEKMWTYMRSAEPSVFTR 168
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFL 654
+ EGV RV K KGK+AF +EST EY E K CD M+VGG LDSKGYG+A P L
Sbjct: 169 TTAEGVARVRKSKGKFAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSSL 226
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 62/155 (40%), Gaps = 27/155 (17%)
Query: 672 PYMM--KNPETGE----LYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E GY VDL IA + YK + + YG + T WNG+
Sbjct: 11 PYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGM 70
Query: 726 IGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLT 785
+GEL V E V I S +L +
Sbjct: 71 VGEL------VYGKAEIAIAPLTITLVREEV--------------IDFSKPFMSLGISIM 110
Query: 786 NTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
+ PI++ EDLAK I YG ++ GST+ FF+
Sbjct: 111 -IKKGTPIESAEDLAKQTEIAYGTLDSGSTKEFFR 144
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 128/238 (53%), Gaps = 31/238 (13%)
Query: 426 PYMM--KNPETGE----LYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
PY+M KN E E GY VDL IA + YK + + YG + T WNG+
Sbjct: 13 PYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGM 72
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDLFSFLEPL 537
+GEL +A++AI LTIT R +DF+ PFM+LGISI+ +K P + DL E
Sbjct: 73 VGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLAKQTE-- 130
Query: 538 SFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVK 597
AY + SGS + + S +++Y++M + M S+ PSVF +
Sbjct: 131 ---------IAY----------GTLDSGSTKEF-FRRSKIAVYEKMWTYMRSAEPSVFTR 170
Query: 598 SNKEGVERVVKEKGKYAFFMESTGIEY-EVEKNCDLMQVGGLLDSKGYGIAMPTSKFL 654
+ EGV RV K KGK+AF +EST EY E K CD M+VGG LDSKGYG+A P L
Sbjct: 171 TTAEGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSSL 228
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 62/155 (40%), Gaps = 27/155 (17%)
Query: 672 PYMM--KNPETGE----LYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 725
PY+M KN E E GY VDL IA + YK + + YG + T WNG+
Sbjct: 13 PYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGM 72
Query: 726 IGELQEQVDXXXXXXXXXXXXXXXXXVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLT 785
+GEL V E V I S +L +
Sbjct: 73 VGEL------VYGKAEIAIAPLTITLVREEV--------------IDFSKPFMSLGISIM 112
Query: 786 NTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820
+ PI++ EDLAK I YG ++ GST+ FF+
Sbjct: 113 -IKKGTPIESAEDLAKQTEIAYGTLDSGSTKEFFR 146
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 175/387 (45%), Gaps = 34/387 (8%)
Query: 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNA 60
++I G+F + + AF A+ ++ + PP ++ P + V DS C+
Sbjct: 11 IQIGGLFPNQQSQEHAAFRFALSQLTE-----PPKLL--PQIDIVNISDSFEMTYRFCSQ 63
Query: 61 TSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLI 120
S+G+ AIFG N++ S C + F P+ + + T+ + + PE +
Sbjct: 64 FSKGVYAIFGFYERRTVNMLTSFCGALHV----CFITPS-FPVDTSNQFVLQLRPE---L 115
Query: 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTD 180
+ + II+ W TF IY+ L LQ+VL+ A + + ++ + L +
Sbjct: 116 QEALISIIDHYKWQTFVYIYDADRGLSVLQRVLDTAAEKNWQV------TAVNILTTTEE 169
Query: 181 DYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVD 240
YR L ++++ E +++DC ++ IL Q ++ G +YIL+ + +D
Sbjct: 170 GYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGF----MDID 225
Query: 241 FQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAV 300
F+ AN+T +++N T+ IM W ++ V + K +AL YD V
Sbjct: 226 LNKFKESGANVTGFQLVNYTDTIPARIMQQW--RTSDSRDHTRVDWKRPKYTSALTYDGV 283
Query: 301 YLFAAALQSLGERK----PLPTPLSC-ENPS-SWQHGLGIGNLMKSITIDGMTGRINLDS 354
+ A A QSL ++ C NP+ W G+ I ++ + +G+TG + +
Sbjct: 284 KVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFN- 342
Query: 355 QTGRRNSFSLEFVEYVSDQWKVLGTWN 381
+ GRR +++L +E D + +G WN
Sbjct: 343 EKGRRTNYTLHVIEMKHDGIRKIGYWN 369
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic
Dimer At 1.4 Angstrom Resolution
pdb|3OM1|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3OM1|B Chain B, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3QLU|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLV|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|E Chain E, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|G Chain G, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|I Chain I, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 393
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/381 (23%), Positives = 181/381 (47%), Gaps = 33/381 (8%)
Query: 17 AFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIEN 76
A +A +IN + +P +E + ++ T MC +G+ ++ GP S
Sbjct: 24 ALALAREQINGIIE-VPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82
Query: 77 RN-IIESMCQMFDIPHVEAFWD--PNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDW 133
+ +C +IPH++ + P ++ V++YP + +S +S I+ ++
Sbjct: 83 SASTVSHICGEKEIPHIKVGPEETPRLQYL---RFASVSLYPSNEDVSLAVSRILKSFNY 139
Query: 134 DTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSS 193
+ ++I + L+ L++++ + + ++++R L D+ D PLLKEI++
Sbjct: 140 PSASLICAKAECLLRLEELV-------RGFLISKETLSVRMLD-DSRDPTPLLKEIRDDK 191
Query: 194 ESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVDFQDFQPGYANITT 253
S I++D + + +L++A E+ + + YIL+ + I + +NI
Sbjct: 192 VSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPI----LHLDGIVEDSSNILG 247
Query: 254 VRMINPTNPH----IRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQS 309
M N ++P +RS+ W EN + A + AALM+DAV++ +A++
Sbjct: 248 FSMFNTSHPFYPEFVRSLNMSW--RENCEASTYPGPA----LSAALMFDAVHVVVSAVRE 301
Query: 310 LGERKPLPT-PLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVE 368
L + + PL+C + + W HG + N ++ + DG+TGR+ +S+ G+R +++L +E
Sbjct: 302 LNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSK-GQRTNYTLRILE 360
Query: 369 YVSDQWKVLGTW--NTAFGLN 387
+ +G W N +N
Sbjct: 361 KSRQGHREIGVWYSNRTLAMN 381
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 38/393 (9%)
Query: 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNA 60
+ I G+F N + +AF AV+ N + L V H+++ +S C+
Sbjct: 6 ISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQ 65
Query: 61 TSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFW--DPNKYFIPTNGVHGVNVYPESH 118
S G+ AIFG + N + S C V + D + F+ + + P
Sbjct: 66 FSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDADVQFV-------IQMRPA-- 116
Query: 119 LISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD 178
+ I +++ W+ F +Y+T LQ ++E A ++ ++ R I+ D
Sbjct: 117 -LKGAILSLLSYYKWEKFVYLYDTERGFSVLQAIMEAAVQNNWQV-TARSVGNIK----D 170
Query: 179 TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQ---NYILSLTSYWIN 235
++R +++E+ E L+DC +++ TIL+Q V ++G + +Y+L+ +
Sbjct: 171 VQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQ---VVILGKHSRGYHYMLANLGF--- 224
Query: 236 AHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWI-YEENERGRSLNVRAETVKIEAA 294
+ + G ANIT +++N NP ++ + W+ +E E + N +K +A
Sbjct: 225 -TDILLERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNA---PLKYTSA 280
Query: 295 LMYDAVYLFAAALQSLGERK----PLPTPLSC-ENPS-SWQHGLGIGNLMKSITIDGMTG 348
L +DA+ + A A + L ++ + C NP+ W G+ I +K + + GMTG
Sbjct: 281 LTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTG 340
Query: 349 RINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWN 381
I D+ GRR +++++ E + G WN
Sbjct: 341 NIQFDT-YGRRTNYTIDVYEMKVSGSRKAGYWN 372
>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain
(Ntd)
Length = 389
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 174/394 (44%), Gaps = 42/394 (10%)
Query: 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNA 60
++I G+F N ++ TAF +A+ N A L P V ++E +S C+
Sbjct: 6 VQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQ 65
Query: 61 TSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLI 120
S G+ AIFG + + + S C I + + PT G + L
Sbjct: 66 YSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSF-------PTEGESQFVLQLRPSLR 118
Query: 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTD 180
+S +++ +W+ F +Y+T LQ ++E A + + ++ + +
Sbjct: 119 GALLS-LLDHYEWNCFVFLYDTDRGYSILQAIMEKAGQNGWHV----SAICVENF--NDV 171
Query: 181 DYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEV--HLMGDYQNYILSLTSYWINAHT 238
YR LL+E+ E ++DC +++ IL+Q V H+ G +YI++ +
Sbjct: 172 SYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKG--YHYIIANLGF----KD 225
Query: 239 VDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVR----AET-VKIEA 293
+ + F G AN+T ++++ P + +M+ W + L+ R +ET K +
Sbjct: 226 ISLERFIHGGANVTGFQLVDFNTPMVTKLMDRW--------KKLDQREYPGSETPPKYTS 277
Query: 294 ALMYDAVYLFAAALQSLGERK----PLPTPLSC-ENPSS-WQHGLGIGNLMKSITIDGMT 347
AL YD V + A +SL +K C NP++ W G+ + +K + I G+T
Sbjct: 278 ALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLT 337
Query: 348 GRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWN 381
G + D GRR +++++ E S + +G WN
Sbjct: 338 GNVQFD-HYGRRVNYTMDVFELKSTGPRKVGYWN 370
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/392 (23%), Positives = 180/392 (45%), Gaps = 39/392 (9%)
Query: 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNA 60
++I G+F ++ +AF + + + + + L P + ++E +S C+
Sbjct: 6 IQIGGLFPRGADQEYSAFRVGMVQFS------TSEFRLTPHIDNLEVANSFAVTAAFCSQ 59
Query: 61 TSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLI 120
S G+ AIFG ++ N I S C HV +F P+ PT+G H + L
Sbjct: 60 FSRGVYAIFGFYDKKSVNTITSFCGTL---HV-SFITPS---FPTDGTHPFVIQMRPDLK 112
Query: 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTD 180
+S +I WD F +Y++ L LQ VL++A + ++ ++ + + D
Sbjct: 113 GALLS-LIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQV----TAINVGNINNDKK 167
Query: 181 D--YRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEV--HLMGDYQNYILSLTSYWINA 236
D YR L ++++ E ++LDC DK I+ Q + H+ G +YI++ +
Sbjct: 168 DETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKG--YHYIIANLGF---- 221
Query: 237 HTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGW-IYEENERGRSLNVRAETVKIEAAL 295
D Q G AN++ ++++ + + + W EE E T+K +AL
Sbjct: 222 TDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYP---GAHTATIKYTSAL 278
Query: 296 MYDAVYLFAAALQSLGERK----PLPTPLSC-ENPS-SWQHGLGIGNLMKSITIDGMTGR 349
YDAV + A ++L +++ C NP+ W G+ I +K + ++G++G
Sbjct: 279 TYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGN 338
Query: 350 INLDSQTGRRNSFSLEFVEYVSDQWKVLGTWN 381
I D Q G+R ++++ +E ++ + +G W+
Sbjct: 339 IKFD-QNGKRINYTINIMELKTNGPRKIGYWS 369
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/392 (23%), Positives = 180/392 (45%), Gaps = 39/392 (9%)
Query: 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNA 60
++I G+F ++ +AF + + + + + L P + ++E +S C+
Sbjct: 1 IQIGGLFPRGADQEYSAFRVGMVQFS------TSEFRLTPHIDNLEVANSFAVTNAFCSQ 54
Query: 61 TSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLI 120
S G+ AIFG ++ N I S C HV +F P+ PT+G H + L
Sbjct: 55 FSRGVYAIFGFYDKKSVNAITSFCGTL---HV-SFITPS---FPTDGTHPFVIQMRPDLK 107
Query: 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTD 180
+S +I WD F +Y++ L LQ VL++A + ++ ++ + + D
Sbjct: 108 GALLS-LIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQV----TAINVGNINNDKK 162
Query: 181 D--YRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEV--HLMGDYQNYILSLTSYWINA 236
D YR L ++++ E ++LDC DK I+ Q + H+ G +YI++ +
Sbjct: 163 DETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKG--YHYIIANLGF---- 216
Query: 237 HTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGW-IYEENERGRSLNVRAETVKIEAAL 295
D Q G AN++ ++++ + + + W EE E T+K +AL
Sbjct: 217 TDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYP---GAHTATIKYTSAL 273
Query: 296 MYDAVYLFAAALQSLGERK----PLPTPLSC-ENPS-SWQHGLGIGNLMKSITIDGMTGR 349
YDAV + A ++L +++ C NP+ W G+ I +K + ++G++G
Sbjct: 274 TYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGN 333
Query: 350 INLDSQTGRRNSFSLEFVEYVSDQWKVLGTWN 381
I D Q G+R ++++ +E ++ + +G W+
Sbjct: 334 IKFD-QNGKRINYTINIMELKTNGPRKIGYWS 364
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/392 (23%), Positives = 180/392 (45%), Gaps = 39/392 (9%)
Query: 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNA 60
++I G+F ++ +AF + + + + + L P + ++E +S C+
Sbjct: 3 IQIGGLFPRGADQEYSAFRVGMVQFS------TSEFRLTPHIDNLEVANSFAVTNAFCSQ 56
Query: 61 TSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLI 120
S G+ AIFG ++ N I S C HV +F P+ PT+G H + L
Sbjct: 57 FSRGVYAIFGFYDKKSVNTITSFCGTL---HV-SFITPS---FPTDGTHPFVIQMRPDLK 109
Query: 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTD 180
+S +I WD F +Y++ L LQ VL++A + ++ ++ + + D
Sbjct: 110 GALLS-LIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQV----TAINVGNINNDKK 164
Query: 181 D--YRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEV--HLMGDYQNYILSLTSYWINA 236
D YR L ++++ E ++LDC DK I+ Q + H+ G +YI++ +
Sbjct: 165 DETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKG--YHYIIANLGF---- 218
Query: 237 HTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGW-IYEENERGRSLNVRAETVKIEAAL 295
D Q G AN++ ++++ + + + W EE E T+K +AL
Sbjct: 219 TDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYP---GAHTATIKYTSAL 275
Query: 296 MYDAVYLFAAALQSLGERK----PLPTPLSC-ENPS-SWQHGLGIGNLMKSITIDGMTGR 349
YDAV + A ++L +++ C NP+ W G+ I +K + ++G++G
Sbjct: 276 TYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGN 335
Query: 350 INLDSQTGRRNSFSLEFVEYVSDQWKVLGTWN 381
I D Q G+R ++++ +E ++ + +G W+
Sbjct: 336 IKFD-QNGKRINYTINIMELKTNGPRKIGYWS 366
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/392 (23%), Positives = 180/392 (45%), Gaps = 39/392 (9%)
Query: 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNA 60
++I G+F ++ +AF + + + + + L P + ++E +S C+
Sbjct: 3 IQIGGLFPRGADQEYSAFRVGMVQFS------TSEFRLTPHIDNLEVANSFAVTNAFCSQ 56
Query: 61 TSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLI 120
S G+ AIFG ++ N I S C HV +F P+ PT+G H + L
Sbjct: 57 FSRGVYAIFGFYDKKSVNTITSFCGTL---HV-SFITPS---FPTDGTHPFVIQMRPDLK 109
Query: 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTD 180
+S +I WD F +Y++ L LQ VL++A + ++ ++ + + D
Sbjct: 110 GALLS-LIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQV----TAINVGNINNDKK 164
Query: 181 D--YRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEV--HLMGDYQNYILSLTSYWINA 236
D YR L ++++ E ++LDC DK I+ Q + H+ G +YI++ +
Sbjct: 165 DEMYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKG--YHYIIANLGF---- 218
Query: 237 HTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGW-IYEENERGRSLNVRAETVKIEAAL 295
D Q G AN++ ++++ + + + W EE E T+K +AL
Sbjct: 219 TDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYP---GAHTTTIKYTSAL 275
Query: 296 MYDAVYLFAAALQSLGERK----PLPTPLSC-ENPS-SWQHGLGIGNLMKSITIDGMTGR 349
YDAV + A ++L +++ C NP+ W G+ I +K + ++G++G
Sbjct: 276 TYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGN 335
Query: 350 INLDSQTGRRNSFSLEFVEYVSDQWKVLGTWN 381
I D Q G+R ++++ +E ++ + +G W+
Sbjct: 336 IKFD-QNGKRINYTINIMELKTNGPRKIGYWS 366
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/392 (23%), Positives = 180/392 (45%), Gaps = 39/392 (9%)
Query: 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNA 60
++I G+F ++ +AF + + + + + L P + ++E +S C+
Sbjct: 11 IQIGGLFPRGADQEYSAFRVGMVQFS------TSEFRLTPHIDNLEVANSFAVTNAFCSQ 64
Query: 61 TSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLI 120
S G+ AIFG ++ N I S C HV +F P+ PT+G H + L
Sbjct: 65 FSRGVYAIFGFYDKKSVNTITSFCGTL---HV-SFITPS---FPTDGTHPFVIQMRPDLK 117
Query: 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTD 180
+S +I WD F +Y++ L LQ VL++A + ++ ++ + + D
Sbjct: 118 GALLS-LIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQV----TAINVGNINNDKK 172
Query: 181 D--YRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEV--HLMGDYQNYILSLTSYWINA 236
D YR L ++++ E ++LDC DK I+ Q + H+ G +YI++ +
Sbjct: 173 DETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKG--YHYIIANLGF---- 226
Query: 237 HTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGW-IYEENERGRSLNVRAETVKIEAAL 295
D Q G AN++ ++++ + + + W EE E T+K +AL
Sbjct: 227 TDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYP---GAHTATIKYTSAL 283
Query: 296 MYDAVYLFAAALQSLGERK----PLPTPLSC-ENPS-SWQHGLGIGNLMKSITIDGMTGR 349
YDAV + A ++L +++ C NP+ W G+ I +K + ++G++G
Sbjct: 284 TYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGN 343
Query: 350 INLDSQTGRRNSFSLEFVEYVSDQWKVLGTWN 381
I D Q G+R ++++ +E ++ + +G W+
Sbjct: 344 IKFD-QNGKRINYTINIMELKTNGPRKIGYWS 374
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 109/245 (44%), Gaps = 50/245 (20%)
Query: 438 YGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTI 497
YGY +DL++ +A +L F ++ + + YG L + G+W GL+G+L RA +A+ +I
Sbjct: 67 YGYCIDLLERLAEDLAFDFELYIVGDGKYGAL--RDGRWTGLVGDLLAGRAHMAVTSFSI 124
Query: 498 TSERRAAVDFTMPFMTLGISILYRKPAKK-----QPDLFSFLEPLSFD-VWVYMATAYLG 551
S R VDFT PF + + I+ R + P L + F VW A AY+
Sbjct: 125 NSARSQVVDFTSPFFSTSLGIMVRTRGTELSGIHDPKLHHPSQGFRFGTVWESSAEAYIK 184
Query: 552 VSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKG 611
S + + R HSA + GV + +
Sbjct: 185 ASF--------------------PEMHAHMRRHSA----------PTTPHGVAMLTSDPP 214
Query: 612 KY-AFFMESTGIEYEV--EKNCDLMQVGGLLDSKGYGIAMPT--------SKFLAKF-SF 659
K AF M+ + ++YEV + +C L+ VG +GYGI +P S+F++++ S
Sbjct: 215 KLNAFIMDKSLLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSS 274
Query: 660 GFAKL 664
GF L
Sbjct: 275 GFIDL 279
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 684 YGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGEL 729
YGY +DL++ +A +L F ++ + + YG L + G+W GL+G+L
Sbjct: 67 YGYCIDLLERLAEDLAFDFELYIVGDGKYGAL--RDGRWTGLVGDL 110
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 30/247 (12%)
Query: 406 RTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENT 465
R +TV + F + G+P + G+S+D++ ++N L F Y+ + ++
Sbjct: 6 RVVTVLEEPFVMVSENVLGKPKKYQ--------GFSIDVLDALSNYLGFNYEIYVAPDHK 57
Query: 466 YGTLNPQ-TGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPA 524
YG+ PQ G WNGL+GEL +RAD+ I LTIT +R VDFT +M + +L R+
Sbjct: 58 YGS--PQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT 115
Query: 525 KKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMH 584
Q L+ LS + T + + R++ S+Y +M
Sbjct: 116 SIQS-----LQDLSKQTDIPYGTV---------LDSAVYQHVRMKGLNPFERDSMYSQMW 161
Query: 585 SAMESSRPSV-FVKSNKEGVERVVKEKGKYAFFMESTGIEYEV--EKNCDLMQVGGLLDS 641
+ S S V ++ G+++V + G YAF ++ +EY + +C VG +
Sbjct: 162 RMINRSNGSENNVLESQAGIQKV--KYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVAD 219
Query: 642 KGYGIAM 648
+GYGIA+
Sbjct: 220 RGYGIAL 226
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 685 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQ-TGKWNGLIGEL 729
G+S+D++ ++N L F Y+ + ++ YG+ PQ G WNGL+GEL
Sbjct: 31 GFSIDVLDALSNYLGFNYEIYVAPDHKYGS--PQEDGTWNGLVGEL 74
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 36/220 (16%)
Query: 437 LYGYSVDLIKMIANELNFTYKFVLERENTYGTL----NPQTGKWNGLIGELQEQRADLAI 492
YG+ +DL+ +A +NFTY+ L + +GT N +WNG++GEL +AD+ +
Sbjct: 63 CYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIV 122
Query: 493 CDLTITSERRAAVDFTMPFMTLGISILYRKPAK----KQPDLFSFLEPLSFDVWVYMATA 548
LTI +ER ++F+ PF G++IL +K + P L + D ++Y
Sbjct: 123 APLTINTERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRN-----PSDKFIYATVK 177
Query: 549 YLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVK 608
V ++F ++ + R+ K++ Y+ A+++ V+
Sbjct: 178 QSSVD--IYFRRQVELSTMYRHMEKHN----YESAAEAIQA-----------------VR 214
Query: 609 EKGKYAFFMESTGIEYEVEKNCDLMQVGGLLDSKGYGIAM 648
+ +AF +S +E+E + CDL+ G L G+GI M
Sbjct: 215 DNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGM 254
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 683 LYGYSVDLIKMIANELNFTYKFVLERENTYGTL----NPQTGKWNGLIGEL 729
YG+ +DL+ +A +NFTY+ L + +GT N +WNG++GEL
Sbjct: 63 CYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGEL 113
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 36/220 (16%)
Query: 437 LYGYSVDLIKMIANELNFTYKFVLERENTYGTL----NPQTGKWNGLIGELQEQRADLAI 492
YG+ +DL+ +A +NFTY+ L + +GT N +WNG++GEL +AD+ +
Sbjct: 63 CYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIV 122
Query: 493 CDLTITSERRAAVDFTMPFMTLGISILYRKPAK----KQPDLFSFLEPLSFDVWVYMATA 548
LTI +ER ++F+ PF G++IL +K + P L + D ++Y
Sbjct: 123 APLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRN-----PSDKFIYATVK 177
Query: 549 YLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVK 608
V ++F ++ + R+ K++ Y+ A+++ V+
Sbjct: 178 QSSVD--IYFRRQVELSTMYRHMEKHN----YESAAEAIQA-----------------VR 214
Query: 609 EKGKYAFFMESTGIEYEVEKNCDLMQVGGLLDSKGYGIAM 648
+ +AF +S +E+E + CDL+ G L G+GI M
Sbjct: 215 DNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGM 254
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 683 LYGYSVDLIKMIANELNFTYKFVLERENTYGTL----NPQTGKWNGLIGEL 729
YG+ +DL+ +A +NFTY+ L + +GT N +WNG++GEL
Sbjct: 63 CYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGEL 113
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 28/246 (11%)
Query: 406 RTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENT 465
R +TV + F + G+P + G+S+D++ ++N L F Y+ + ++
Sbjct: 6 RVVTVLEEPFVXVSENVLGKPKKYQ--------GFSIDVLDALSNYLGFNYEIYVAPDHK 57
Query: 466 YGTLNPQT-GKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPA 524
YG+ PQ G WNGL+GEL +RAD+ I LTIT +R VDFT + + +L R+
Sbjct: 58 YGS--PQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYXDYSVGVLLRRGT 115
Query: 525 KKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMH 584
Q L+ LS + T + ++ R L ++S S R
Sbjct: 116 SIQS-----LQDLSKQTDIPYGTV---LDSAVYQHVRXKG---LNPFERDSXYSQXWRXI 164
Query: 585 SAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEV--EKNCDLMQVGGLLDSK 642
+ S +V ++ G+++V + G YAF ++ +EY + +C VG + +
Sbjct: 165 NRSNGSENNVL--ESQAGIQKV--KYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADR 220
Query: 643 GYGIAM 648
GYGIA+
Sbjct: 221 GYGIAL 226
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 685 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQT-GKWNGLIGEL 729
G+S+D++ ++N L F Y+ + ++ YG+ PQ G WNGL+GEL
Sbjct: 31 GFSIDVLDALSNYLGFNYEIYVAPDHKYGS--PQEDGTWNGLVGEL 74
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 37/219 (16%)
Query: 438 YGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTI 497
YGY +DL++ +A ++NF + + + YG + G W GL+G+L A++A+ +I
Sbjct: 69 YGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAW--KNGHWTGLVGDLLSGTANMAVTSFSI 126
Query: 498 TSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLF 557
+ R +DFT PF + + IL R + +L +P
Sbjct: 127 NTARSQVIDFTSPFFSTSLGILVR---TRGTELSGIHDPK-------------------- 163
Query: 558 FLARISSGSRL----RYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKY 613
L S G R SA++ + MH M V + +GV+ + + K
Sbjct: 164 -LHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYN----VPATPDGVQYLKNDPEKL 218
Query: 614 -AFFMESTGIEYEV--EKNCDLMQVGGLLDSKGYGIAMP 649
AF M+ ++YEV + +C L+ VG +GYGI +P
Sbjct: 219 DAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLP 257
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 684 YGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGEL 729
YGY +DL++ +A ++NF + + + YG + G W GL+G+L
Sbjct: 69 YGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAW--KNGHWTGLVGDL 112
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 108/244 (44%), Gaps = 63/244 (25%)
Query: 426 PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE 485
P PE G+ +D++K +A+ + F+Y L +G G WNG+IGE+
Sbjct: 48 PPDAPRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHG--KKIDGVWNGMIGEVFY 105
Query: 486 QRADLAICDLTITSERRAAVDFTMPFMTLGISIL--------------YRKPAKKQPDLF 531
QRAD+AI LTI ER VDF++PF+ GIS++ +++P ++ P
Sbjct: 106 QRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARGTTVSGLSDRKFQRPQEQYP--- 162
Query: 532 SFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSR 591
PL F + +GS + KN S Y MHS M
Sbjct: 163 ----PLKF--------------------GTVPNGS----TEKNIR-SNYPDMHSYM---- 189
Query: 592 PSVFVKSNKEGVERVVKE--KGKY-AFFMESTGIEYEVEKN--CDLMQVGG--LLDSKGY 644
V+ N+ VE + + GK AF ++ + Y K+ C L+ +G + + GY
Sbjct: 190 ----VRYNQPRVEEALTQLKAGKLDAFIYDAAVLNYMARKDEGCKLVTIGSGKVFATTGY 245
Query: 645 GIAM 648
GIA+
Sbjct: 246 GIAL 249
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 672 PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGEL 729
P PE G+ +D++K +A+ + F+Y L +G G WNG+IGE+
Sbjct: 48 PPDAPRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHG--KKIDGVWNGMIGEV 103
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 49/224 (21%)
Query: 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT 498
G+ +D++K ++ + FTY L +G WNG+IGE+ QRA +A+ LTI
Sbjct: 59 GFCIDILKKLSRTVKFTYDLYLVTNGKHG--KKVNNVWNGMIGEVVYQRAVMAVGSLTIN 116
Query: 499 SERRAAVDFTMPFMTLGISILYRKPA-------KKQPDLFSFLEPLSFDVWVYMATAYLG 551
ER VDF++PF+ GIS++ + KK + P F
Sbjct: 117 EERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRF------------ 164
Query: 552 VSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVER--VVKE 609
+ +GS R N Y MH M + N+ GVE V +
Sbjct: 165 --------GTVPNGSTERNIRNN-----YPYMHQYM--------TRFNQRGVEDALVSLK 203
Query: 610 KGKY-AFFMESTGIEYEV--EKNCDLMQVGG--LLDSKGYGIAM 648
GK AF ++ + Y+ ++ C L+ +G + + GYGIA+
Sbjct: 204 TGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIAL 247
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 685 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQ 732
G+ +D++K ++ + FTY L +G WNG+IGE+ Q
Sbjct: 59 GFCIDILKKLSRTVKFTYDLYLVTNGKHG--KKVNNVWNGMIGEVVYQ 104
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 14/96 (14%)
Query: 426 PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE 485
P+++ N GEL G+S+DL + IA ++ K + Y ++ P+ LI +++
Sbjct: 14 PFVLSN--KGELSGFSIDLWRSIATQIGIESKLI-----EYSSV-PE------LISAIKD 59
Query: 486 QRADLAICDLTITSERRAAVDFTMPFMTLGISILYR 521
+ +L I ++IT+ER DF++P G+ I+ R
Sbjct: 60 NKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVR 95
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 14/90 (15%)
Query: 433 ETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLA 491
+ G+LY G+ VDL IA EL Y+ L P ++G+I LQ + DLA
Sbjct: 19 KQGDLYVGFDVDLWAAIAKELKLDYE-----------LKPM--DFSGIIPALQTKNVDLA 65
Query: 492 ICDLTITSERRAAVDFTMPFMTLGISILYR 521
+ +TIT ER+ A+DF+ + G+ ++ +
Sbjct: 66 LAGITITDERKKAIDFSDGYYKSGLLVMVK 95
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 433 ETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLA 491
+ G+ Y G+ +DL IA +TYK Q + GLI LQ Q D+A
Sbjct: 40 KQGDKYVGFDLDLWAEIAKGAGWTYKI-------------QPMDFAGLIPALQTQNIDVA 86
Query: 492 ICDLTITSERRAAVDFTMPFMTLGISILYR 521
+ +TI ERR A+DF+ P+ G++ + +
Sbjct: 87 LSGMTIKEERRKAIDFSDPYYDSGLAAMVQ 116
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 88/226 (38%), Gaps = 43/226 (19%)
Query: 434 TGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAIC 493
T +L GY +DLI+ + +++ F L NT + GL+ L D+AI
Sbjct: 34 TTKLTGYVLDLIEYLRDKMGFVADVQLAPPNT---------SYTGLVLALANGDYDIAIG 84
Query: 494 DLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAY-LGV 552
D+T+TS RR V F+ + IL RK L ++ L Y +G
Sbjct: 85 DITVTSARREIVAFSNSISDNSMRILMRKGT-----LIDGMDDLKNGKIPYNRIGIRIGT 139
Query: 553 SLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGK 612
+ ++L IS GSR Y K+ Q M+ ++ + V
Sbjct: 140 AGEDYYLREISGGSRNFYPLKSR-----QEMYDSLLAGIIDV------------------ 176
Query: 613 YAFFMESTGIEYEVEKN--CDLMQVGGLLDSKGYGIAMPTSKFLAK 656
FM+ EY V N C+L VG D +GI P AK
Sbjct: 177 --SFMDIGTAEY-VTNNIYCNLTLVGEDFDKSTFGIVTPKEWLYAK 219
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 19/106 (17%)
Query: 427 YMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQ 486
YM K G++ G+ VDL+ + Y E +N W+ L LQ +
Sbjct: 57 YMQK----GKIVGFDVDLLDAVMKAAGLDY----ELKNI---------GWDPLFASLQSK 99
Query: 487 RADLAICDLTITSERRAAVDFTMPFMTLGISILYRK--PAKKQPDL 530
D+ I +TIT ER+ + DF+ P+ IL ++ P K DL
Sbjct: 100 EVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSPVKNALDL 145
>pdb|3K4U|A Chain A, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|B Chain B, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|C Chain C, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|D Chain D, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|E Chain E, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|F Chain F, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
Length = 245
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 426 PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE 485
P+ K+ + G + G+ VDL + A K V P + W+GLI L
Sbjct: 17 PFEXKD-KKGNVIGFDVDLAREXAKAXGVKLKLV-----------PTS--WDGLIPGLVT 62
Query: 486 QRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKK 526
++ D+ I TI+ ER V+F P++ +G S+L +K +K
Sbjct: 63 EKFDIIISGXTISQERNLRVNFVEPYIVVGQSLLVKKGLEK 103
>pdb|4H5F|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|C Chain C, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|D Chain D, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5G|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
pdb|4H5G|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
Length = 243
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 41/221 (18%)
Query: 436 ELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDL 495
++ G +D+ + IA+EL + + + ++ ++ LQ +ADLA+ +
Sbjct: 36 QVVGADIDMAQAIADELGVKLEIL-------------SMSFDNVLTSLQTGKADLAVAGI 82
Query: 496 TITSERRAAVDFTMPFMTLGISILYRKP-AKKQPDLFSF--------------------L 534
+ T ER+ DF++P+ IS L K +K DL S L
Sbjct: 83 SATDERKEVFDFSIPYYENKISFLVHKADVEKYKDLTSLESANIAAQKGTVPESMVKEQL 142
Query: 535 EPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSV 594
M A + + L Y+AKN+ +++ + +V
Sbjct: 143 PKAQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAV 202
Query: 595 FVKSN----KEGVERVV---KEKGKYAFFMESTGIEYEVEK 628
++ N KE V++V+ K++G Y ++E EVE+
Sbjct: 203 ALRKNSDDLKEVVDKVIQKLKDEGTYQSYLEKAASLTEVEE 243
>pdb|1HSL|A Chain A, Refined 1.89 Angstroms Structure Of The Histidine-Binding
Protein Complexed With Histidine And Its Relationship
With Many Other Active Transport(Slash)chemosensory
Receptors
pdb|1HSL|B Chain B, Refined 1.89 Angstroms Structure Of The Histidine-Binding
Protein Complexed With Histidine And Its Relationship
With Many Other Active Transport(Slash)chemosensory
Receptors
pdb|1HPB|P Chain P, The Bacterial Periplasmic Histidine-Binding Protein:
Structure(Slash)function Analysis Of The Ligand-Binding
Site And Comparison With Related Proteins
Length = 238
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 426 PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE 485
P+ KN + GEL G+ +DL K + +N FV NP + LI L+
Sbjct: 16 PFESKNAQ-GELVGFDIDLAKELCKRINTQCTFV---------ENP----LDALIPSLKA 61
Query: 486 QRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSF 533
++ D + L+IT +R+ + FT ++ K + QP + S
Sbjct: 62 KKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTVASL 109
>pdb|4F3S|A Chain A, Crystal Structure Of Periplasmic D-Alanine Abc Transporter
From Salmonella Enterica
Length = 255
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 463 ENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPF 511
++ + LN W+G +G + +AD+A ++IT +R+ +DF+ P+
Sbjct: 44 QSRHCKLNITEYAWDGXLGAVASGQADVAFSGISITDKRKKVIDFSEPY 92
>pdb|2V25|A Chain A, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
pdb|2V25|B Chain B, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
Length = 259
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 18/109 (16%)
Query: 427 YMMKNPETGELYGYSVDLIKMIANEL---NFTYKFVLERENTYGTLNPQTGKWNGLIGEL 483
Y + + TGE+ G+ VD+ K++A + + K V T G L L
Sbjct: 51 YALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPL-------------L 97
Query: 484 QEQRADLAICDLTITSERRAAVDFTMPFM--TLGISILYRKPAKKQPDL 530
D I TIT ER+ +F+ P+ +G+ +L K K D+
Sbjct: 98 DNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADM 146
>pdb|4I62|A Chain A, 1.05 Angstrom Crystal Structure Of An Amino Acid Abc
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Canada Mdr_19a Bound To L-Arginine
Length = 269
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 436 ELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDL 495
++ G ++L K IA EL +E E L+P + ++ ++ +Q +ADLAI +
Sbjct: 63 QIVGSDIELAKAIATELG------VELE-----LSPMS--FDNVLASVQSGKADLAISGV 109
Query: 496 TITSERRAAVDFTMPFMTLGISILYRK 522
+ T ER DF+ P+ T ++ +K
Sbjct: 110 SKTDERSKVFDFSTPYYTAKNKLIVKK 136
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 37.4 bits (85), Expect = 0.037, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 426 PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE 485
PY+ P +G++ G+ D++K V ++ T++ Q W+ LI L+
Sbjct: 14 PYVYXGP-SGQVEGFGADIVKA-----------VCKQXQAVCTISNQ--PWDSLIPSLKL 59
Query: 486 QRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK 522
+ D IT+ R+ VDFT P+ T +S + K
Sbjct: 60 GKFDALFGGXNITTARQKEVDFTDPYYTNSVSFIADK 96
>pdb|4DZ1|A Chain A, Crystal Structure Of Dals, An Atp Binding Cassette
Transporter For D- Alanine From Salmonella Enterica
Length = 259
Score = 36.6 bits (83), Expect = 0.065, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 469 LNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPF 511
LN W+G +G + +AD+A ++IT +R+ +DF+ P+
Sbjct: 70 LNITEYAWDGXLGAVASGQADVAFSGISITDKRKKVIDFSEPY 112
>pdb|3KZG|A Chain A, Crystal Structure Of An Arginine 3rd Transport System
Periplasmic Binding Protein From Legionella Pneumophila
pdb|3KZG|B Chain B, Crystal Structure Of An Arginine 3rd Transport System
Periplasmic Binding Protein From Legionella Pneumophila
pdb|3KZG|C Chain C, Crystal Structure Of An Arginine 3rd Transport System
Periplasmic Binding Protein From Legionella Pneumophila
pdb|3KZG|D Chain D, Crystal Structure Of An Arginine 3rd Transport System
Periplasmic Binding Protein From Legionella Pneumophila
Length = 237
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 426 PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE 485
P+ + + LYG+ +DL + I L+ T F + ++ L L+
Sbjct: 15 PFEVWSGNNSSLYGFDIDLXQEICRRLHATCTF-------------EAYIFDDLFPALKN 61
Query: 486 QRADLAICDLTITSERRAAVDFTMPF 511
+ DL I IT ER+ F++P+
Sbjct: 62 REVDLVIASXIITDERKKHFIFSLPY 87
>pdb|4EQ9|A Chain A, 1.4 Angstrom Crystal Structure Of Putative Abc Transporter
Substrate- Binding Protein From Streptococcus Pneumoniae
Strain Canada Mdr_19a In Complex With Glutathione
Length = 246
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 420 VLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479
V G P E GEL GY +++++ I + + K+ ++ E T +W+G+
Sbjct: 12 VATNGSPRPFIYEENGELTGYEIEVVRAIFKDSD---KYDVKFEKT---------EWSGV 59
Query: 480 IGELQEQRADLAICDLTITSERRAAVDFTMP 510
L R ++A+ +L+ T ER + P
Sbjct: 60 FAGLDADRYNMAVNNLSYTKERAEKYLYAAP 90
>pdb|2YLN|A Chain A, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Closed Conformation
pdb|3ZSF|A Chain A, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|B Chain B, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|C Chain C, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|D Chain D, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|E Chain E, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|F Chain F, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|G Chain G, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
pdb|3ZSF|H Chain H, Crystal Structure Of The L-Cystine Solute Receptor Of
Neisseria Gonorrhoeae In The Unliganded Open
Conformation
Length = 283
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 26/114 (22%)
Query: 401 EKIENR-TLTV-TSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKF 458
E+I N+ T+TV T T+A P+ + + G+L GY V++ + +A +L +F
Sbjct: 51 ERINNKGTVTVGTEGTYA---------PFTYHDKD-GKLTGYDVEVTRAVAEKLGVKVEF 100
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITS-ERRAAVDFTMPF 511
+ +W+ ++ L+ R D+ + +TS ER+A D + P+
Sbjct: 101 -------------KETQWDSMMAGLKAGRFDVVANQVGLTSPERQATFDKSEPY 141
>pdb|2YJP|A Chain A, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|B Chain B, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|C Chain C, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
Length = 291
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 483 LQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK 522
++ + DL + + T T ER AVDF P+M + + ++ K
Sbjct: 113 VRSGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPK 152
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 40/191 (20%)
Query: 172 IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231
+ Q P T + LL E + I+L S D T+ + A +++ G Y+ +
Sbjct: 174 VLQFDPGTKNVTALLMEARELEARVIILSASEDDAATVYRAAAMLNMTG--SGYVWLVGE 231
Query: 232 YWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKI 291
I+ + + + I +++IN N
Sbjct: 232 REISGNALRYAP-----DGIIGLQLINGKN------------------------------ 256
Query: 292 EAALMYDAVYLFAAALQSLGERKPLPTP-LSC-ENPSSWQHG-LGIGNLMKSITIDGMTG 348
E+A + DAV + A A+ L E++ + P C N + W+ G L LM S DG+TG
Sbjct: 257 ESAHISDAVGVVAQAVHELLEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYADGVTG 316
Query: 349 RINLDSQTGRR 359
R+ + R+
Sbjct: 317 RVEFNEDGDRK 327
>pdb|1XT8|A Chain A, Crystal Structure Of Cysteine-Binding Protein From
Campylobacter Jejuni At 2.0 A Resolution
pdb|1XT8|B Chain B, Crystal Structure Of Cysteine-Binding Protein From
Campylobacter Jejuni At 2.0 A Resolution
Length = 292
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 33/145 (22%)
Query: 385 GLNHSRTVEQMDKEKKEKIENRTLTVTSKTFAKLRV-LFQGEPYMMKNPETGELYGYSVD 443
G + S+T+ +DK K+ + +R+ +F +P E G GY +
Sbjct: 27 GNSDSKTLNSLDKIKQNGV--------------VRIGVFGDKPPFGYVDEKGNNQGYDIA 72
Query: 444 LIKMIANEL---NFTYKFVL-ERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITS 499
L K IA EL +FVL E N + L+ + D+ + + T T
Sbjct: 73 LAKRIAKELFGDENKVQFVLVEAANR--------------VEFLKSNKVDIILANFTQTP 118
Query: 500 ERRAAVDFTMPFMTLGISILYRKPA 524
+R VDF P+M + + + K +
Sbjct: 119 QRAEQVDFCSPYMKVALGVAVPKDS 143
>pdb|3MOE|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Beta-Sulfopyruvate And Gtp
pdb|3MOF|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Oxalate And Gtp
pdb|3MOF|B Chain B, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Oxalate And Gtp
pdb|3MOH|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Phosphoglycolate And Gdp
pdb|3MOH|B Chain B, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Phosphoglycolate And Gdp
Length = 624
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 310 LGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGM--TGRINLDSQTGRRNSFSLEFV 367
G R+P PL E SWQHG+ +G M+S G G++ + R F F
Sbjct: 435 FGGRRPAGVPLVYEA-LSWQHGVFVGAAMRSEATAGAEHKGKVIMHDPFAMRPFFGYNFG 493
Query: 368 EYVS 371
+Y++
Sbjct: 494 KYLA 497
>pdb|3DEL|B Chain B, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
pdb|3DEL|C Chain C, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
pdb|3DEL|D Chain D, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
pdb|3DEL|F Chain F, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
Length = 242
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 435 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICD 494
GE+ G+ +DL + I+N+L TL+ + ++ LI L++ R D I
Sbjct: 31 GEVVGFDIDLAREISNKLG-------------KTLDVREFSFDALILNLKQHRIDAVITG 77
Query: 495 LTITSER 501
++IT R
Sbjct: 78 MSITPSR 84
>pdb|4E8W|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8W|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
Length = 352
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 195 SHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWIN-----AHTVDFQDFQPGYA 249
+H +L + + +L Q +V LM DY L+ + I V +A
Sbjct: 169 THEVLLAGLARFDVLLPQ-HDVVLMSDYAKGGLTHVTTMIEKARAAGKAVLVDPKGDDWA 227
Query: 250 NITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMY---DAVYLFAAA 306
+I P +R ++ W E++ R R N+RAE + I+A L+ + + LF+A
Sbjct: 228 RYRGASLITPNRAELREVVGQWKSEDDLRARVANLRAE-LDIDALLLTRSEEGMTLFSAG 286
>pdb|3BC8|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase
pdb|3BCA|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase, Sodium
Iodide Soak
pdb|3BCB|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase, Sodium
Phosphate Soak
Length = 450
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 65/178 (36%), Gaps = 26/178 (14%)
Query: 67 AIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISV 126
A F P+ + + +C +DIPHV N +G+ HLI +G V
Sbjct: 207 ACFAPRVPDRLEELAVICANYDIPHV------------VNNAYGLQSSKCMHLIQQGARV 254
Query: 127 IINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPS------VTIRQLPPDTD 180
D + + + E D ++ PGR S V I L
Sbjct: 255 GRIDAFVQSLDXNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCS 314
Query: 181 DYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYI-LSLTSYWINAH 237
YR LLKE K E + L + K L +A L+ N I L++T I+ H
Sbjct: 315 GYRKLLKERK---EMFVYLSTQLKK----LAEAHNERLLQTPHNPISLAMTLKTIDGH 365
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 290 KIEAALMYDAVYLFAAALQSLGERKPLPTP-LSC-ENPSSWQHG-LGIGNLMKSITIDGM 346
K E+A + DAV + A A+ L E + + P C N + W+ G L LM S DG+
Sbjct: 274 KNESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGV 333
Query: 347 TGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHSRTV 392
TGRI + + G R + + + +G +N ++ + + R +
Sbjct: 334 TGRIEFN-EDGDRKFAQYSIMNLQNRKLVQVGIFNGSYIIQNDRKI 378
>pdb|4E84|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda
pdb|4E84|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda
Length = 352
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 248 YANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALM 296
+A +I P +R ++ W E++ R R N+RAE + I+A L+
Sbjct: 226 WARYRGASLITPNRAELREVVGQWKSEDDLRARVANLRAE-LDIDALLL 273
>pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Native Data
pdb|1KHF|A Chain A, Pepck Complex With Pep
pdb|1KHG|A Chain A, Pepck
pdb|1M51|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|1NHX|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|B Chain B, Pepck Complex With A Gtp-Competitive Inhibitor
Length = 625
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 310 LGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGM--TGRINLDSQTGRRNSFSLEFV 367
G R+P PL E SWQHG+ +G M+S G+I + R F F
Sbjct: 436 FGGRRPAGVPLVYEA-LSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFG 494
Query: 368 EYVS 371
+Y++
Sbjct: 495 KYLA 498
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT 498
G S+D+ + +A + ++V + + G I + E D+ I +++T
Sbjct: 29 GISLDVWRAVAESQKWNSEYVRQNSISAG------------ITAVAEGELDILIGPISVT 76
Query: 499 SERRA--AVDFTMPFMTLGISIL 519
ER A + FT P+ + GI +L
Sbjct: 77 PERAAIEGITFTQPYFSSGIGLL 99
>pdb|1O0V|A Chain A, The Crystal Structure Of Ige Fc Reveals An Asymmetrically
Bent Conformation
pdb|1O0V|B Chain B, The Crystal Structure Of Ige Fc Reveals An Asymmetrically
Bent Conformation
Length = 327
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 379 TWNTAFG--LNHSRTVEQMDKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMK 430
TW+ A G +NHS K+EK N TLTVTS R +GE Y +
Sbjct: 153 TWSRASGKPVNHS-------TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR 199
>pdb|2WQR|A Chain A, The High Resolution Crystal Structure Of Ige Fc
pdb|2WQR|B Chain B, The High Resolution Crystal Structure Of Ige Fc
Length = 323
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 379 TWNTAFG--LNHSRTVEQMDKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMK 430
TW+ A G +NHS K+EK N TLTVTS R +GE Y +
Sbjct: 150 TWSRASGKPVNHS-------TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR 196
>pdb|2QF2|A Chain A, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid And
Gdp.
pdb|2QF2|B Chain B, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid And
Gdp.
pdb|2QEW|A Chain A, Rat Cytosolic Pepck, In Complex With Manganese Ion.
pdb|2QEY|A Chain A, Rat Cytosolic Pepck In Complex With Gtp
pdb|2QF1|A Chain A, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid.
pdb|2RK7|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate
pdb|2RK7|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate
pdb|2RK8|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphonoformate
pdb|2RK8|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphonoformate
pdb|2RKA|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate
pdb|2RKA|C Chain C, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate
pdb|2RKD|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With 3-
Phosphonopropionate
pdb|2RKE|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Sulfoacetate.
pdb|3DT2|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT4|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT4|C Chain C, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT7|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With Beta-
Sulfopyruvate And Gtp
pdb|3DT7|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With Beta-
Sulfopyruvate And Gtp
pdb|3DTB|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate And Gdp
pdb|3DTB|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate And Gdp
Length = 624
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 310 LGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGM--TGRINLDSQTGRRNSFSLEFV 367
G R+P PL E SWQHG+ +G M+S G++ + R F F
Sbjct: 435 FGGRRPAGVPLVYEA-LSWQHGVFVGAAMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFG 493
Query: 368 EYVS 371
+Y++
Sbjct: 494 KYLA 497
>pdb|2Y7Q|B Chain B, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
pdb|2Y7Q|D Chain D, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 327
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 379 TWNTAFG--LNHSRTVEQMDKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMK 430
TW+ A G +NHS K+EK N TLTVTS R +GE Y +
Sbjct: 153 TWSRASGKPVNHS-------TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR 199
>pdb|4GRG|C Chain C, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|D Chain D, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 230
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 379 TWNTAFG--LNHSRTVEQMDKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMK 430
TW+ A G +NHS K+EK N TLTVTS R +GE Y +
Sbjct: 49 TWSRASGKPVNHS-------TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR 95
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT 498
G S+D+ + +A + ++V + + G I + E D+ I +++T
Sbjct: 29 GISLDVWRAVAESQKWNSEYVRQNSISAG------------ITAVAEGELDILIGPISVT 76
Query: 499 SERRA--AVDFTMPFMTLGISIL 519
ER A + FT P+ + GI +L
Sbjct: 77 PERAAIEGITFTQPYFSSGIGLL 99
>pdb|1F6A|B Chain B, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
pdb|1F6A|D Chain D, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
pdb|1FP5|A Chain A, Crystal Structure Analysis Of The Human Ige-Fc Cepsilon3-
Cepsilon4 Fragment
Length = 222
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 379 TWNTAFG--LNHSRTVEQMDKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMK 430
TW+ A G +NHS K+EK N TLTVTS R +GE Y +
Sbjct: 48 TWSRASGKPVNHS-------TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR 94
>pdb|4GT7|A Chain A, An Engineered Disulfide Bond Reversibly Traps The
Ige-Fc3-4 In A Closed, Non-Receptor Binding Conformation
pdb|4GT7|B Chain B, An Engineered Disulfide Bond Reversibly Traps The
Ige-Fc3-4 In A Closed, Non-Receptor Binding Conformation
pdb|4GT7|C Chain C, An Engineered Disulfide Bond Reversibly Traps The
Ige-Fc3-4 In A Closed, Non-Receptor Binding Conformation
pdb|4GT7|D Chain D, An Engineered Disulfide Bond Reversibly Traps The
Ige-Fc3-4 In A Closed, Non-Receptor Binding Conformation
Length = 221
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 379 TWNTAFG--LNHSRTVEQMDKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMK 430
TW+ A G +NHS K+EK N TLTVTS R +GE Y +
Sbjct: 49 TWSRASGKPVNHS-------TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,815,861
Number of Sequences: 62578
Number of extensions: 980659
Number of successful extensions: 2751
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2305
Number of HSP's gapped (non-prelim): 267
length of query: 821
length of database: 14,973,337
effective HSP length: 107
effective length of query: 714
effective length of database: 8,277,491
effective search space: 5910128574
effective search space used: 5910128574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)