Query psy16206
Match_columns 821
No_of_seqs 390 out of 3206
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 23:31:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1054|consensus 100.0 4.2E-86 9.2E-91 679.0 42.3 644 1-821 27-684 (897)
2 KOG4440|consensus 100.0 1.6E-56 3.5E-61 462.9 34.2 606 2-820 37-705 (993)
3 KOG1053|consensus 100.0 3.4E-49 7.3E-54 423.6 43.2 573 46-681 81-806 (1258)
4 cd06387 PBP1_iGluR_AMPA_GluR3 100.0 1.6E-49 3.5E-54 426.7 38.0 362 2-386 1-371 (372)
5 cd06392 PBP1_iGluR_delta_1 N-t 100.0 2E-49 4.4E-54 426.7 37.9 369 2-387 1-399 (400)
6 cd06393 PBP1_iGluR_Kainate_Glu 100.0 3.7E-49 7.9E-54 433.5 39.0 370 1-388 3-383 (384)
7 cd06390 PBP1_iGluR_AMPA_GluR1 100.0 2.4E-48 5.3E-53 419.1 36.3 356 2-386 1-363 (364)
8 cd06388 PBP1_iGluR_AMPA_GluR4 100.0 2.3E-47 4.9E-52 413.6 36.6 363 2-387 1-370 (371)
9 cd06389 PBP1_iGluR_AMPA_GluR2 100.0 4.4E-47 9.6E-52 412.6 38.3 358 2-387 1-369 (370)
10 cd06380 PBP1_iGluR_AMPA N-term 100.0 8.7E-47 1.9E-51 415.8 37.6 365 2-386 1-381 (382)
11 cd06391 PBP1_iGluR_delta_2 N-t 100.0 1.8E-45 3.9E-50 401.0 37.2 368 2-387 1-399 (400)
12 cd06394 PBP1_iGluR_Kainate_KA1 100.0 2.2E-44 4.8E-49 381.0 30.5 325 2-388 1-333 (333)
13 cd06382 PBP1_iGluR_Kainate N-t 100.0 6E-43 1.3E-47 377.2 33.1 325 2-386 1-326 (327)
14 KOG1052|consensus 100.0 8.3E-41 1.8E-45 391.8 38.8 450 185-820 5-469 (656)
15 cd06381 PBP1_iGluR_delta_like 100.0 9.7E-40 2.1E-44 352.1 35.6 336 2-387 1-363 (363)
16 cd06386 PBP1_NPR_C_like Ligand 100.0 8.4E-40 1.8E-44 359.2 35.5 351 4-382 3-378 (387)
17 cd06379 PBP1_iGluR_NMDA_NR1 N- 100.0 1.6E-39 3.5E-44 357.0 37.1 332 1-388 20-368 (377)
18 cd06368 PBP1_iGluR_non_NMDA_li 100.0 8.8E-40 1.9E-44 352.4 33.3 323 2-386 1-323 (324)
19 cd06367 PBP1_iGluR_NMDA N-term 100.0 2.8E-39 6E-44 353.4 36.9 331 1-382 3-351 (362)
20 cd06362 PBP1_mGluR Ligand bind 100.0 3E-39 6.6E-44 363.7 36.8 371 1-387 3-451 (452)
21 cd06373 PBP1_NPR_like Ligand b 100.0 2.1E-39 4.5E-44 358.8 34.7 359 2-384 1-390 (396)
22 cd06372 PBP1_GC_G_like Ligand- 100.0 6.6E-39 1.4E-43 354.1 37.0 361 2-384 1-387 (391)
23 cd06385 PBP1_NPR_A Ligand-bind 100.0 4.6E-39 9.9E-44 356.9 35.3 358 2-384 1-392 (405)
24 cd06366 PBP1_GABAb_receptor Li 100.0 2.6E-39 5.6E-44 352.5 31.7 336 2-388 1-348 (350)
25 cd06352 PBP1_NPR_GC_like Ligan 100.0 1.5E-38 3.3E-43 351.8 35.4 359 2-386 1-385 (389)
26 cd06370 PBP1_Speract_GC_like L 100.0 5.6E-39 1.2E-43 355.3 31.2 360 1-385 1-397 (404)
27 cd06361 PBP1_GPC6A_like Ligand 100.0 5.6E-38 1.2E-42 344.6 38.0 331 12-387 35-398 (403)
28 cd06374 PBP1_mGluR_groupI Liga 100.0 2E-38 4.3E-43 357.4 34.7 361 12-389 41-470 (472)
29 cd06376 PBP1_mGluR_groupIII Li 100.0 4.5E-38 9.8E-43 353.9 36.7 367 1-383 3-453 (463)
30 cd06377 PBP1_iGluR_NMDA_NR3 N- 100.0 1.3E-37 2.7E-42 328.6 36.6 337 1-390 19-378 (382)
31 cd06384 PBP1_NPR_B Ligand-bind 100.0 1.2E-37 2.7E-42 344.3 33.9 356 2-384 1-393 (399)
32 cd06383 PBP1_iGluR_AMPA_Like N 100.0 7.4E-38 1.6E-42 338.2 29.8 335 6-368 6-359 (368)
33 cd06371 PBP1_sensory_GC_DEF_li 100.0 2.8E-37 6E-42 338.3 32.1 348 2-380 1-369 (382)
34 cd06375 PBP1_mGluR_groupII Lig 100.0 1.2E-36 2.6E-41 339.8 37.3 364 1-382 3-454 (458)
35 cd06365 PBP1_Pheromone_recepto 100.0 1.9E-36 4.1E-41 339.6 36.6 353 12-382 39-452 (469)
36 cd06364 PBP1_CaSR Ligand-bindi 100.0 6E-36 1.3E-40 337.6 38.1 355 12-382 49-493 (510)
37 cd06363 PBP1_Taste_receptor Li 100.0 4.8E-36 1E-40 332.6 35.5 334 12-388 42-402 (410)
38 PF01094 ANF_receptor: Recepto 100.0 5.2E-36 1.1E-40 326.8 34.1 337 14-370 2-348 (348)
39 cd06351 PBP1_iGluR_N_LIVBP_lik 100.0 2.9E-35 6.2E-40 318.2 33.6 319 2-382 1-322 (328)
40 cd06378 PBP1_iGluR_NMDA_NR2 N- 100.0 2.8E-33 6E-38 301.5 34.2 313 35-391 32-358 (362)
41 cd06342 PBP1_ABC_LIVBP_like Ty 100.0 2.2E-33 4.9E-38 304.1 31.7 323 2-369 1-334 (334)
42 cd06345 PBP1_ABC_ligand_bindin 100.0 4.8E-33 1E-37 302.3 30.5 317 2-360 1-337 (344)
43 PRK15404 leucine ABC transport 100.0 1.3E-32 2.9E-37 299.9 32.6 329 1-374 26-364 (369)
44 cd06338 PBP1_ABC_ligand_bindin 100.0 1.5E-32 3.3E-37 298.8 29.7 323 2-368 1-344 (345)
45 cd06346 PBP1_ABC_ligand_bindin 100.0 2.2E-32 4.8E-37 292.5 27.9 295 2-361 1-306 (312)
46 cd06348 PBP1_ABC_ligand_bindin 100.0 8.2E-32 1.8E-36 292.7 32.6 329 2-366 1-343 (344)
47 TIGR03669 urea_ABC_arch urea A 100.0 2.8E-31 6.1E-36 288.6 33.1 337 1-381 1-349 (374)
48 cd06355 PBP1_FmdD_like Peripla 100.0 3.9E-31 8.4E-36 287.0 32.3 329 2-375 1-343 (348)
49 COG0683 LivK ABC-type branched 100.0 3.9E-31 8.5E-36 287.7 30.3 332 1-373 11-356 (366)
50 cd06340 PBP1_ABC_ligand_bindin 100.0 2.4E-31 5.2E-36 288.9 28.2 320 2-362 1-342 (347)
51 cd06344 PBP1_ABC_ligand_bindin 100.0 4.3E-31 9.4E-36 285.3 29.8 316 2-362 1-327 (332)
52 cd06350 PBP1_GPCR_family_C_lik 100.0 5.8E-31 1.3E-35 286.8 30.3 302 2-383 1-340 (348)
53 cd06359 PBP1_Nba_like Type I p 100.0 1.6E-30 3.6E-35 280.9 31.9 318 2-362 1-327 (333)
54 cd06331 PBP1_AmiC_like Type I 100.0 1.2E-30 2.6E-35 282.1 30.0 315 2-360 1-326 (333)
55 cd06329 PBP1_SBP_like_3 Peripl 100.0 1.4E-30 2.9E-35 282.5 30.2 312 2-358 1-333 (342)
56 TIGR03407 urea_ABC_UrtA urea A 100.0 5.4E-30 1.2E-34 279.1 32.8 330 1-374 1-343 (359)
57 cd06330 PBP1_Arsenic_SBP_like 100.0 5.4E-30 1.2E-34 278.8 30.5 319 2-360 1-337 (346)
58 cd06343 PBP1_ABC_ligand_bindin 100.0 1.1E-29 2.3E-34 278.2 32.6 334 1-374 7-362 (362)
59 cd06347 PBP1_ABC_ligand_bindin 100.0 9.1E-30 2E-34 275.9 31.4 315 2-362 1-329 (334)
60 cd06349 PBP1_ABC_ligand_bindin 100.0 1.4E-29 3E-34 274.7 31.8 326 2-373 1-339 (340)
61 cd06357 PBP1_AmiC Periplasmic 100.0 6.5E-29 1.4E-33 270.8 33.3 331 2-379 1-348 (360)
62 cd06328 PBP1_SBP_like_2 Peripl 100.0 5.6E-29 1.2E-33 268.5 32.3 317 2-362 1-329 (333)
63 cd06327 PBP1_SBP_like_1 Peripl 100.0 1.8E-29 3.8E-34 273.1 28.1 314 2-360 1-328 (334)
64 PF13458 Peripla_BP_6: Peripla 100.0 2.6E-29 5.5E-34 273.4 29.3 324 1-372 2-341 (343)
65 cd06356 PBP1_Amide_Urea_BP_lik 100.0 1.2E-28 2.7E-33 265.9 30.9 309 2-359 1-326 (334)
66 cd06336 PBP1_ABC_ligand_bindin 100.0 4.8E-29 1E-33 270.8 27.6 317 2-363 1-343 (347)
67 cd06358 PBP1_NHase Type I peri 100.0 8.4E-29 1.8E-33 267.6 29.1 311 2-358 1-324 (333)
68 cd06360 PBP1_alkylbenzenes_lik 100.0 1.7E-28 3.6E-33 266.1 31.4 321 2-364 1-332 (336)
69 KOG1056|consensus 100.0 1.7E-28 3.7E-33 274.9 30.6 360 12-388 59-477 (878)
70 cd06334 PBP1_ABC_ligand_bindin 100.0 1.2E-28 2.7E-33 266.7 28.5 321 2-354 1-344 (351)
71 cd06332 PBP1_aromatic_compound 100.0 4.3E-28 9.3E-33 262.6 31.9 318 2-362 1-327 (333)
72 cd06335 PBP1_ABC_ligand_bindin 100.0 3.5E-28 7.6E-33 264.1 30.1 319 2-359 1-338 (347)
73 cd06337 PBP1_ABC_ligand_bindin 100.0 8.3E-28 1.8E-32 261.9 27.5 331 2-373 1-356 (357)
74 PF13433 Peripla_BP_5: Peripla 100.0 1.5E-27 3.2E-32 246.0 26.6 323 1-370 1-338 (363)
75 cd06326 PBP1_STKc_like Type I 99.9 2.2E-25 4.8E-30 241.7 30.5 312 1-354 1-326 (336)
76 cd06339 PBP1_YraM_LppC_lipopro 99.9 2.2E-25 4.8E-30 240.4 26.4 298 2-360 1-330 (336)
77 TIGR03863 PQQ_ABC_bind ABC tra 99.9 8.3E-25 1.8E-29 234.3 24.5 298 9-369 8-315 (347)
78 cd06269 PBP1_glutamate_recepto 99.9 2.1E-24 4.5E-29 229.6 25.5 216 2-229 1-230 (298)
79 KOG1055|consensus 99.9 7E-26 1.5E-30 245.0 13.0 355 12-385 61-432 (865)
80 cd06341 PBP1_ABC_ligand_bindin 99.9 2.2E-23 4.7E-28 226.4 28.5 300 2-344 1-314 (341)
81 cd04509 PBP1_ABC_transporter_G 99.9 6.3E-23 1.4E-27 218.2 25.3 276 2-302 1-290 (299)
82 cd06333 PBP1_ABC-type_HAAT_lik 99.9 5.1E-22 1.1E-26 212.8 27.9 274 2-304 1-293 (312)
83 cd06369 PBP1_GC_C_enterotoxin_ 99.9 2E-21 4.4E-26 199.8 29.1 322 12-387 18-369 (380)
84 cd06268 PBP1_ABC_transporter_L 99.9 1.1E-20 2.4E-25 200.8 26.6 275 2-304 1-287 (298)
85 PRK10797 glutamate and asparta 99.9 1.4E-21 3E-26 206.2 10.8 226 396-682 30-272 (302)
86 PRK11260 cystine transporter s 99.8 4.4E-21 9.6E-26 200.0 11.6 228 396-682 31-262 (266)
87 PRK10859 membrane-bound lytic 99.8 2.5E-21 5.4E-26 217.3 7.6 272 397-731 34-332 (482)
88 PRK09495 glnH glutamine ABC tr 99.8 1.3E-20 2.8E-25 194.3 10.7 218 404-682 23-244 (247)
89 PF00497 SBP_bac_3: Bacterial 99.8 7.4E-21 1.6E-25 193.3 7.0 209 423-682 8-225 (225)
90 PRK15010 ABC transporter lysin 99.8 1.1E-19 2.3E-24 188.9 11.7 220 403-681 23-254 (260)
91 PRK09959 hybrid sensory histid 99.8 8.5E-20 1.8E-24 230.6 11.3 225 396-681 46-277 (1197)
92 TIGR02995 ectoine_ehuB ectoine 99.8 1.1E-19 2.5E-24 190.2 10.1 226 396-679 23-259 (275)
93 TIGR01096 3A0103s03R lysine-ar 99.8 2.5E-19 5.4E-24 185.4 11.3 223 397-680 16-250 (250)
94 PRK11917 bifunctional adhesin/ 99.8 3.2E-19 7E-24 184.4 11.7 225 396-680 28-258 (259)
95 PRK15007 putative ABC transpor 99.8 2.2E-19 4.8E-24 184.9 10.3 215 405-681 20-242 (243)
96 PRK15437 histidine ABC transpo 99.8 4E-19 8.6E-24 184.5 10.8 220 403-682 23-255 (259)
97 TIGR02285 conserved hypothetic 99.7 1.5E-17 3.2E-22 173.6 9.4 221 405-682 17-262 (268)
98 PRK09959 hybrid sensory histid 99.7 7.9E-17 1.7E-21 203.7 11.0 223 397-682 293-521 (1197)
99 TIGR03870 ABC_MoxJ methanol ox 99.6 2.9E-16 6.4E-21 161.3 8.7 218 418-679 2-241 (246)
100 cd00134 PBPb Bacterial peripla 99.6 4.2E-15 9.1E-20 149.4 9.8 210 418-680 1-218 (218)
101 COG4623 Predicted soluble lyti 99.6 2.5E-15 5.4E-20 150.5 6.6 279 397-731 14-313 (473)
102 COG0834 HisJ ABC-type amino ac 99.6 5.4E-15 1.2E-19 155.3 9.7 225 402-682 30-265 (275)
103 smart00062 PBPb Bacterial peri 99.6 1.2E-14 2.5E-19 146.1 10.8 210 418-680 2-219 (219)
104 TIGR03871 ABC_peri_MoxJ_2 quin 99.5 2.5E-14 5.4E-19 146.1 8.5 210 418-680 2-228 (232)
105 cd01391 Periplasmic_Binding_Pr 99.4 1.3E-10 2.8E-15 120.7 23.5 207 2-229 1-217 (269)
106 PF10613 Lig_chan-Glu_bd: Liga 99.2 1.5E-11 3.2E-16 94.1 4.5 59 426-485 1-65 (65)
107 PF04348 LppC: LppC putative l 99.2 3E-09 6.5E-14 120.0 22.2 300 2-371 221-535 (536)
108 KOG1053|consensus 99.1 9.8E-11 2.1E-15 128.7 6.9 136 683-820 465-704 (1258)
109 PF00060 Lig_chan: Ligand-gate 98.8 2.4E-09 5.1E-14 100.8 2.6 54 750-803 62-115 (148)
110 TIGR01098 3A0109s03R phosphate 98.7 8.6E-08 1.9E-12 99.3 12.0 201 403-663 29-253 (254)
111 KOG1054|consensus 98.6 2.7E-08 5.9E-13 105.3 4.4 106 573-680 683-790 (897)
112 cd01537 PBP1_Repressors_Sugar_ 98.5 9.3E-06 2E-10 84.2 19.5 191 2-220 1-204 (264)
113 smart00079 PBPe Eukaryotic hom 98.4 5.9E-08 1.3E-12 89.5 0.2 84 594-681 49-133 (134)
114 cd06267 PBP1_LacI_sugar_bindin 98.3 0.00012 2.6E-09 75.8 22.6 191 2-220 1-203 (264)
115 cd06300 PBP1_ABC_sugar_binding 98.2 5.7E-05 1.2E-09 78.9 18.6 193 2-219 1-209 (272)
116 cd01536 PBP1_ABC_sugar_binding 98.2 0.00018 4E-09 74.7 21.4 193 2-219 1-206 (267)
117 cd06325 PBP1_ABC_uncharacteriz 98.2 9.4E-05 2E-09 77.7 19.0 200 2-219 1-209 (281)
118 PF10613 Lig_chan-Glu_bd: Liga 98.2 9.3E-07 2E-11 67.9 2.6 49 682-731 17-65 (65)
119 COG3107 LppC Putative lipoprot 98.1 5.4E-05 1.2E-09 80.8 15.4 132 2-147 259-397 (604)
120 cd06320 PBP1_allose_binding Pe 98.0 0.00092 2E-08 69.9 20.7 194 2-219 1-207 (275)
121 PRK00489 hisG ATP phosphoribos 97.9 7.1E-06 1.5E-10 85.9 4.0 163 475-682 52-220 (287)
122 cd06319 PBP1_ABC_sugar_binding 97.8 0.002 4.4E-08 67.3 21.0 190 2-219 1-210 (277)
123 TIGR03431 PhnD phosphonate ABC 97.8 0.00014 3.1E-09 76.6 10.9 190 443-674 48-257 (288)
124 cd06312 PBP1_ABC_sugar_binding 97.8 0.0033 7.1E-08 65.6 20.9 196 2-219 1-208 (271)
125 PF13407 Peripla_BP_4: Peripla 97.8 0.0029 6.3E-08 65.4 20.3 194 3-221 1-209 (257)
126 cd06309 PBP1_YtfQ_like Peripla 97.7 0.0062 1.4E-07 63.5 21.8 199 2-221 1-212 (273)
127 cd06301 PBP1_rhizopine_binding 97.7 0.0058 1.3E-07 63.7 21.0 197 2-226 1-215 (272)
128 cd06282 PBP1_GntR_like_2 Ligan 97.6 0.0037 7.9E-08 64.9 19.0 192 2-221 1-203 (266)
129 KOG4440|consensus 97.6 2.9E-05 6.4E-10 83.3 2.0 91 583-680 713-804 (993)
130 cd06317 PBP1_ABC_sugar_binding 97.5 0.0088 1.9E-07 62.4 20.1 193 2-219 1-212 (275)
131 cd06323 PBP1_ribose_binding Pe 97.5 0.0095 2.1E-07 61.8 20.0 189 2-218 1-205 (268)
132 cd06273 PBP1_GntR_like_1 This 97.5 0.013 2.9E-07 60.8 20.8 189 2-221 1-205 (268)
133 cd06322 PBP1_ABC_sugar_binding 97.5 0.022 4.7E-07 59.1 22.0 189 2-218 1-203 (267)
134 cd01545 PBP1_SalR Ligand-bindi 97.4 0.019 4.1E-07 59.6 21.3 190 2-221 1-206 (270)
135 cd06310 PBP1_ABC_sugar_binding 97.4 0.025 5.4E-07 58.9 22.2 200 2-227 1-215 (273)
136 cd06284 PBP1_LacI_like_6 Ligan 97.4 0.025 5.4E-07 58.6 21.8 189 3-220 2-202 (267)
137 cd06308 PBP1_sensor_kinase_lik 97.3 0.042 9.1E-07 57.1 22.0 200 2-227 1-214 (270)
138 COG2984 ABC-type uncharacteriz 97.3 0.047 1E-06 56.0 20.9 198 1-219 31-241 (322)
139 cd06289 PBP1_MalI_like Ligand- 97.3 0.035 7.6E-07 57.5 21.1 193 2-221 1-205 (268)
140 cd06311 PBP1_ABC_sugar_binding 97.3 0.033 7E-07 58.1 20.7 195 2-219 1-210 (274)
141 cd06305 PBP1_methylthioribose_ 97.3 0.027 5.9E-07 58.6 19.9 190 2-219 1-208 (273)
142 cd01575 PBP1_GntR Ligand-bindi 97.2 0.05 1.1E-06 56.4 21.1 192 2-221 1-204 (268)
143 cd06298 PBP1_CcpA_like Ligand- 97.2 0.069 1.5E-06 55.3 22.0 189 2-221 1-204 (268)
144 PRK10653 D-ribose transporter 97.2 0.067 1.4E-06 56.5 22.0 189 2-218 28-231 (295)
145 PF00532 Peripla_BP_1: Peripla 97.2 0.029 6.2E-07 58.7 18.8 195 2-222 3-209 (279)
146 cd06316 PBP1_ABC_sugar_binding 97.1 0.09 2E-06 55.5 22.2 198 2-218 1-210 (294)
147 cd06288 PBP1_sucrose_transcrip 97.1 0.05 1.1E-06 56.4 19.8 191 2-221 1-204 (269)
148 cd06303 PBP1_LuxPQ_Quorum_Sens 97.1 0.12 2.7E-06 54.0 22.8 208 2-226 1-221 (280)
149 cd06274 PBP1_FruR Ligand bindi 97.0 0.12 2.6E-06 53.4 21.8 194 2-222 1-206 (264)
150 cd06321 PBP1_ABC_sugar_binding 97.0 0.12 2.5E-06 53.8 21.5 190 2-218 1-205 (271)
151 cd01539 PBP1_GGBP Periplasmic 97.0 0.12 2.6E-06 54.8 21.9 198 2-221 1-228 (303)
152 cd06275 PBP1_PurR Ligand-bindi 97.0 0.078 1.7E-06 55.0 20.0 193 2-221 1-205 (269)
153 cd06293 PBP1_LacI_like_11 Liga 96.9 0.16 3.4E-06 52.7 21.8 190 2-222 1-205 (269)
154 cd01574 PBP1_LacI Ligand-bindi 96.9 0.1 2.2E-06 53.9 20.2 188 2-221 1-201 (264)
155 cd01541 PBP1_AraR Ligand-bindi 96.9 0.11 2.5E-06 53.9 20.7 195 2-222 1-211 (273)
156 cd06270 PBP1_GalS_like Ligand 96.9 0.22 4.8E-06 51.6 22.3 189 2-221 1-204 (268)
157 cd06313 PBP1_ABC_sugar_binding 96.8 0.17 3.8E-06 52.6 21.0 168 38-218 30-207 (272)
158 cd06278 PBP1_LacI_like_2 Ligan 96.8 0.095 2.1E-06 54.1 18.9 187 3-217 2-197 (266)
159 cd01542 PBP1_TreR_like Ligand- 96.8 0.14 3E-06 52.7 19.8 193 3-227 2-206 (259)
160 cd06296 PBP1_CatR_like Ligand- 96.8 0.16 3.5E-06 52.7 20.4 188 2-220 1-204 (270)
161 TIGR01481 ccpA catabolite cont 96.7 0.27 5.9E-06 52.7 22.3 187 2-221 61-263 (329)
162 cd01538 PBP1_ABC_xylose_bindin 96.7 0.22 4.9E-06 52.3 21.1 194 2-220 1-216 (288)
163 PRK10703 DNA-binding transcrip 96.7 0.2 4.4E-06 54.1 21.2 190 2-221 61-266 (341)
164 cd06299 PBP1_LacI_like_13 Liga 96.7 0.25 5.5E-06 51.0 21.2 191 2-221 1-202 (265)
165 PF04392 ABC_sub_bind: ABC tra 96.7 0.097 2.1E-06 55.2 17.9 182 2-203 1-194 (294)
166 cd06271 PBP1_AglR_RafR_like Li 96.7 0.22 4.7E-06 51.5 20.5 189 2-222 1-209 (268)
167 cd06283 PBP1_RegR_EndR_KdgR_li 96.7 0.25 5.4E-06 51.0 20.9 191 2-221 1-205 (267)
168 PRK10014 DNA-binding transcrip 96.6 0.35 7.5E-06 52.2 22.4 189 2-220 66-269 (342)
169 cd06306 PBP1_TorT-like TorT-li 96.6 0.21 4.6E-06 51.8 19.9 190 2-218 1-207 (268)
170 cd06324 PBP1_ABC_sugar_binding 96.6 0.36 7.9E-06 51.2 21.8 199 2-221 1-229 (305)
171 cd06280 PBP1_LacI_like_4 Ligan 96.6 0.21 4.6E-06 51.5 19.4 188 2-222 1-200 (263)
172 cd06290 PBP1_LacI_like_9 Ligan 96.6 0.35 7.7E-06 49.9 21.1 195 2-221 1-203 (265)
173 PRK11303 DNA-binding transcrip 96.6 0.32 6.9E-06 52.2 21.4 189 2-221 63-265 (328)
174 cd01540 PBP1_arabinose_binding 96.5 0.45 9.8E-06 49.9 22.1 201 2-223 1-223 (289)
175 cd06292 PBP1_LacI_like_10 Liga 96.5 0.35 7.6E-06 50.2 20.7 193 2-221 1-208 (273)
176 cd06318 PBP1_ABC_sugar_binding 96.5 0.59 1.3E-05 48.8 22.2 195 2-219 1-215 (282)
177 PRK10936 TMAO reductase system 96.5 0.41 8.9E-06 51.8 21.4 191 2-219 48-255 (343)
178 cd06295 PBP1_CelR Ligand bindi 96.4 0.43 9.2E-06 49.6 20.8 149 55-220 54-212 (275)
179 cd06291 PBP1_Qymf_like Ligand 96.4 0.35 7.6E-06 49.9 19.8 187 2-220 1-199 (265)
180 cd06285 PBP1_LacI_like_7 Ligan 96.4 0.35 7.5E-06 50.0 19.7 188 2-220 1-201 (265)
181 COG1879 RbsB ABC-type sugar tr 96.4 0.81 1.8E-05 48.9 22.9 200 2-220 35-245 (322)
182 PRK10423 transcriptional repre 96.4 0.61 1.3E-05 50.0 22.0 189 2-222 58-263 (327)
183 cd06281 PBP1_LacI_like_5 Ligan 96.2 0.21 4.5E-06 51.8 17.2 189 2-221 1-203 (269)
184 TIGR02417 fruct_sucro_rep D-fr 96.2 0.35 7.7E-06 51.8 19.4 188 2-221 62-264 (327)
185 cd06304 PBP1_BmpA_like Peripla 96.2 0.76 1.6E-05 47.4 21.2 189 2-217 1-202 (260)
186 COG1609 PurR Transcriptional r 96.2 0.61 1.3E-05 50.1 20.9 193 2-222 60-265 (333)
187 TIGR02634 xylF D-xylose ABC tr 96.2 0.38 8.3E-06 50.9 19.1 196 3-219 1-209 (302)
188 cd06294 PBP1_ycjW_transcriptio 96.2 0.63 1.4E-05 48.1 20.5 192 2-221 1-210 (270)
189 cd06286 PBP1_CcpB_like Ligand- 96.2 0.74 1.6E-05 47.3 20.8 186 2-220 1-201 (260)
190 cd06307 PBP1_uncharacterized_s 96.2 1 2.2E-05 46.8 22.0 191 2-219 1-210 (275)
191 cd06277 PBP1_LacI_like_1 Ligan 96.1 0.45 9.7E-06 49.2 18.6 186 2-220 1-203 (268)
192 PRK15408 autoinducer 2-binding 96.0 0.47 1E-05 51.0 18.8 192 2-219 25-234 (336)
193 cd06302 PBP1_LsrB_Quorum_Sensi 95.9 1.3 2.8E-05 46.7 21.6 194 2-219 1-210 (298)
194 PRK09701 D-allose transporter 95.9 1.5 3.2E-05 46.7 22.0 197 2-219 26-241 (311)
195 cd06314 PBP1_tmGBP Periplasmic 95.9 2.1 4.5E-05 44.4 22.7 191 2-219 1-204 (271)
196 PRK10727 DNA-binding transcrip 95.8 1.5 3.2E-05 47.3 22.1 189 2-222 61-265 (343)
197 TIGR02955 TMAO_TorT TMAO reduc 95.8 1.5 3.2E-05 46.2 21.3 189 2-218 1-207 (295)
198 cd06354 PBP1_BmpA_PnrA_like Pe 95.7 0.85 1.8E-05 47.2 18.6 188 2-217 1-206 (265)
199 PRK09526 lacI lac repressor; R 95.7 1 2.2E-05 48.6 19.9 188 2-222 65-268 (342)
200 PRK09492 treR trehalose repres 95.6 0.97 2.1E-05 48.1 19.4 184 2-218 64-256 (315)
201 KOG1052|consensus 95.6 0.0076 1.6E-07 71.5 2.9 94 584-682 475-573 (656)
202 cd06315 PBP1_ABC_sugar_binding 95.4 1.7 3.6E-05 45.4 20.0 196 2-221 2-216 (280)
203 PF12974 Phosphonate-bd: ABC t 95.4 0.06 1.3E-06 55.0 8.6 182 440-666 15-219 (243)
204 TIGR01729 taurine_ABC_bnd taur 95.3 0.055 1.2E-06 57.3 8.4 140 447-628 20-164 (300)
205 PRK14987 gluconate operon tran 95.3 2.2 4.9E-05 45.7 20.9 192 2-224 65-269 (331)
206 TIGR02637 RhaS rhamnose ABC tr 95.2 2.5 5.3E-05 44.7 20.5 158 48-219 40-210 (302)
207 cd01543 PBP1_XylR Ligand-bindi 95.2 1.7 3.8E-05 44.7 19.0 181 2-219 1-196 (265)
208 cd06272 PBP1_hexuronate_repres 95.1 2 4.4E-05 44.0 19.3 184 2-221 1-199 (261)
209 PRK11553 alkanesulfonate trans 95.0 0.12 2.6E-06 55.2 9.8 71 442-525 43-120 (314)
210 PRK10355 xylF D-xylose transpo 95.0 2.7 5.8E-05 45.1 20.2 192 2-219 27-236 (330)
211 cd06353 PBP1_BmpA_Med_like Per 94.9 1.9 4.2E-05 44.4 18.0 188 2-218 1-201 (258)
212 cd06279 PBP1_LacI_like_3 Ligan 94.9 3.1 6.7E-05 43.4 20.1 149 56-221 48-222 (283)
213 PRK10401 DNA-binding transcrip 94.8 3.2 6.9E-05 44.8 20.5 189 2-222 61-265 (346)
214 cd06297 PBP1_LacI_like_12 Liga 94.7 6 0.00013 40.8 21.9 186 2-222 1-208 (269)
215 COG3221 PhnD ABC-type phosphat 94.5 0.26 5.6E-06 51.4 10.2 189 439-666 52-260 (299)
216 PRK15395 methyl-galactoside AB 94.2 8.7 0.00019 41.2 21.9 197 2-218 26-249 (330)
217 TIGR02122 TRAP_TAXI TRAP trans 93.7 0.49 1.1E-05 50.5 11.0 73 441-525 47-132 (320)
218 TIGR02405 trehalos_R_Ecol treh 93.7 6.6 0.00014 41.6 19.6 184 2-218 61-253 (311)
219 PRK11041 DNA-binding transcrip 93.6 11 0.00024 39.6 21.3 193 2-226 37-245 (309)
220 PF13379 NMT1_2: NMT1-like fam 92.4 0.87 1.9E-05 46.7 10.2 65 446-523 27-99 (252)
221 cd01544 PBP1_GalR Ligand-bindi 90.6 13 0.00029 38.2 17.0 139 62-221 50-206 (270)
222 cd06353 PBP1_BmpA_Med_like Per 88.5 7.6 0.00017 39.9 13.0 86 2-98 122-210 (258)
223 TIGR02995 ectoine_ehuB ectoine 87.8 0.33 7.2E-06 50.6 2.4 107 681-820 52-160 (275)
224 cd06287 PBP1_LacI_like_8 Ligan 85.6 17 0.00037 37.5 13.9 150 60-227 52-211 (269)
225 PRK11260 cystine transporter s 85.3 0.52 1.1E-05 48.9 2.2 103 681-819 61-164 (266)
226 PRK07377 hypothetical protein; 84.7 2.2 4.8E-05 40.0 5.7 43 439-493 93-135 (184)
227 TIGR03427 ABC_peri_uca ABC tra 83.9 1.5 3.4E-05 46.7 5.1 58 417-492 3-61 (328)
228 PF12683 DUF3798: Protein of u 83.4 55 0.0012 33.2 15.9 201 2-218 4-224 (275)
229 TIGR01728 SsuA_fam ABC transpo 83.1 5.9 0.00013 41.2 9.2 68 446-525 19-92 (288)
230 TIGR03870 ABC_MoxJ methanol ox 82.9 0.65 1.4E-05 47.5 1.7 97 684-819 19-121 (246)
231 PF14503 YhfZ_C: YhfZ C-termin 82.7 5.3 0.00011 39.7 7.8 76 437-525 25-108 (232)
232 PF06506 PrpR_N: Propionate ca 82.0 27 0.00059 33.4 12.5 133 38-219 10-145 (176)
233 PRK09495 glnH glutamine ABC tr 81.8 1.2 2.7E-05 45.4 3.3 102 681-819 44-146 (247)
234 PF09084 NMT1: NMT1/THI5 like; 78.3 22 0.00048 35.1 11.1 84 441-538 8-95 (216)
235 TIGR02990 ectoine_eutA ectoine 77.6 7.7 0.00017 39.2 7.3 89 120-218 107-207 (239)
236 cd05466 PBP2_LTTR_substrate Th 76.5 5 0.00011 38.0 5.7 70 439-525 13-83 (197)
237 PRK15437 histidine ABC transpo 76.4 1.8 4E-05 44.5 2.6 101 681-818 46-147 (259)
238 PRK10859 membrane-bound lytic 76.1 1.6 3.4E-05 49.6 2.1 101 683-819 63-164 (482)
239 TIGR01096 3A0103s03R lysine-ar 75.4 2 4.4E-05 43.7 2.7 102 681-819 44-146 (250)
240 PRK15010 ABC transporter lysin 75.0 1.8 4E-05 44.5 2.2 101 681-818 46-147 (260)
241 PF02608 Bmp: Basic membrane p 74.8 34 0.00074 36.2 11.8 89 2-99 128-224 (306)
242 PRK15007 putative ABC transpor 73.1 2.4 5.1E-05 43.1 2.4 100 681-819 41-141 (243)
243 CHL00180 rbcR LysR transcripti 72.9 20 0.00043 37.8 9.5 72 440-525 109-181 (305)
244 PRK10200 putative racemase; Pr 72.1 18 0.0004 36.3 8.5 46 48-94 58-104 (230)
245 PRK10339 DNA-binding transcrip 70.4 66 0.0014 34.1 13.0 139 63-221 113-261 (327)
246 PF00497 SBP_bac_3: Bacterial 69.1 0.82 1.8E-05 45.5 -2.0 45 681-738 19-63 (225)
247 PRK10797 glutamate and asparta 68.3 2.7 5.8E-05 44.5 1.6 101 681-819 60-168 (302)
248 COG1744 Med Uncharacterized AB 67.3 93 0.002 33.5 13.0 90 2-100 163-255 (345)
249 PF03808 Glyco_tran_WecB: Glyc 66.8 55 0.0012 31.2 10.1 88 120-216 36-124 (172)
250 cd08445 PBP2_BenM_CatM_CatR Th 65.5 19 0.0004 34.7 7.0 70 439-525 14-84 (203)
251 TIGR00035 asp_race aspartate r 64.5 14 0.0003 37.2 5.9 45 49-94 59-104 (229)
252 COG4126 Hydantoin racemase [Am 64.3 1.5E+02 0.0033 29.2 18.3 170 1-212 1-194 (230)
253 COG3473 Maleate cis-trans isom 63.0 98 0.0021 30.1 10.5 130 53-218 56-205 (238)
254 cd08421 PBP2_LTTR_like_1 The C 62.6 34 0.00073 32.5 8.2 69 440-525 14-83 (198)
255 TIGR02329 propionate_PrpR prop 62.5 97 0.0021 35.5 12.6 133 38-219 30-165 (526)
256 PF01177 Asp_Glu_race: Asp/Glu 62.3 1.6E+02 0.0035 28.9 13.6 123 57-215 58-198 (216)
257 PF07302 AroM: AroM protein; 61.1 96 0.0021 30.8 10.6 73 134-214 126-201 (221)
258 cd08468 PBP2_Pa0477 The C-term 61.0 29 0.00063 33.4 7.4 73 439-525 13-86 (202)
259 cd06533 Glyco_transf_WecG_TagA 60.8 66 0.0014 30.6 9.5 89 120-217 34-123 (171)
260 PF03466 LysR_substrate: LysR 60.0 29 0.00062 33.4 7.2 70 439-525 19-89 (209)
261 COG1638 DctP TRAP-type C4-dica 59.9 14 0.0003 39.5 5.0 64 442-512 47-111 (332)
262 PRK03601 transcriptional regul 59.9 27 0.00059 36.2 7.3 70 439-525 102-172 (275)
263 PF13531 SBP_bac_11: Bacterial 59.7 1E+02 0.0022 30.6 11.3 84 439-535 11-101 (230)
264 TIGR03871 ABC_peri_MoxJ_2 quin 59.6 5.3 0.00012 40.1 1.8 101 682-819 17-119 (232)
265 PF13377 Peripla_BP_3: Peripla 59.4 38 0.00082 31.4 7.6 86 125-221 1-95 (160)
266 PF03180 Lipoprotein_9: NLPA l 56.4 34 0.00073 34.5 6.8 70 442-523 14-88 (237)
267 PRK11242 DNA-binding transcrip 56.0 43 0.00092 35.0 8.1 70 439-525 104-174 (296)
268 cd00134 PBPb Bacterial peripla 56.0 9.2 0.0002 37.2 2.8 102 681-819 19-120 (218)
269 cd08435 PBP2_GbpR The C-termin 55.5 72 0.0016 30.2 9.1 72 439-525 13-85 (201)
270 PF07885 Ion_trans_2: Ion chan 54.8 18 0.00038 29.3 3.8 36 750-785 43-78 (79)
271 COG4213 XylF ABC-type xylose t 53.9 2.8E+02 0.0061 29.0 16.8 198 2-221 27-244 (341)
272 PRK07475 hypothetical protein; 53.8 43 0.00093 34.1 7.3 44 49-93 62-106 (245)
273 COG0715 TauA ABC-type nitrate/ 52.8 1.2E+02 0.0025 32.4 11.0 149 439-631 45-204 (335)
274 COG1794 RacX Aspartate racemas 52.6 1.3E+02 0.0027 29.9 9.6 136 48-202 58-197 (230)
275 PRK11151 DNA-binding transcrip 52.6 52 0.0011 34.5 8.1 70 439-525 104-174 (305)
276 cd08466 PBP2_LeuO The C-termin 52.3 44 0.00094 31.8 7.0 70 439-525 13-83 (200)
277 cd08415 PBP2_LysR_opines_like 51.6 43 0.00093 31.6 6.8 70 439-525 13-83 (196)
278 cd08433 PBP2_Nac The C-teminal 50.9 42 0.00091 31.9 6.6 70 439-525 13-83 (198)
279 TIGR00363 lipoprotein, YaeC fa 50.6 32 0.00069 35.3 5.7 32 450-493 42-73 (258)
280 cd08453 PBP2_IlvR The C-termin 49.6 60 0.0013 30.9 7.5 73 439-525 13-86 (200)
281 PRK11480 tauA taurine transpor 49.5 16 0.00035 38.9 3.6 34 448-493 45-78 (320)
282 cd08446 PBP2_Chlorocatechol Th 49.4 55 0.0012 31.0 7.2 70 439-525 14-84 (198)
283 cd08451 PBP2_BudR The C-termin 49.4 50 0.0011 31.3 6.9 70 440-525 15-85 (199)
284 smart00062 PBPb Bacterial peri 48.2 15 0.00032 35.5 2.9 102 681-819 20-121 (219)
285 cd08440 PBP2_LTTR_like_4 TThe 48.0 55 0.0012 30.8 6.9 70 439-525 13-83 (197)
286 TIGR02136 ptsS_2 phosphate bin 47.1 41 0.00089 35.1 6.1 73 439-524 48-127 (287)
287 cd08420 PBP2_CysL_like C-termi 46.8 62 0.0014 30.5 7.1 70 439-525 13-83 (201)
288 PRK11425 PTS system N-acetylga 46.3 1E+02 0.0023 28.8 7.9 79 121-211 16-94 (157)
289 PF03480 SBP_bac_7: Bacterial 46.0 48 0.001 34.6 6.4 60 439-506 14-73 (286)
290 cd00578 L-fuc_L-ara-isomerases 45.9 4.4E+02 0.0096 29.6 14.5 125 1-139 1-133 (452)
291 TIGR00854 pts-sorbose PTS syst 45.7 1E+02 0.0022 28.7 7.7 80 121-211 14-93 (151)
292 cd08448 PBP2_LTTR_aromatics_li 45.7 68 0.0015 30.2 7.1 70 439-525 13-83 (197)
293 PRK12683 transcriptional regul 45.6 68 0.0015 33.8 7.6 69 441-525 108-177 (309)
294 cd08465 PBP2_ToxR The C-termin 45.6 60 0.0013 31.1 6.8 69 439-524 13-82 (200)
295 PF02608 Bmp: Basic membrane p 45.5 3.9E+02 0.0084 28.1 19.1 164 38-219 35-213 (306)
296 cd08430 PBP2_IlvY The C-termin 45.3 50 0.0011 31.2 6.2 71 439-525 13-84 (199)
297 PRK09791 putative DNA-binding 45.0 80 0.0017 33.0 8.1 72 439-525 108-180 (302)
298 cd08467 PBP2_SyrM The C-termin 44.8 59 0.0013 31.1 6.6 70 439-525 13-83 (200)
299 PF12916 DUF3834: Protein of u 44.7 24 0.00052 33.7 3.4 44 439-494 77-121 (201)
300 cd08419 PBP2_CbbR_RubisCO_like 44.6 61 0.0013 30.5 6.6 70 439-525 12-82 (197)
301 cd08459 PBP2_DntR_NahR_LinR_li 44.5 61 0.0013 30.9 6.6 70 439-525 13-83 (201)
302 COG1454 EutG Alcohol dehydroge 44.2 75 0.0016 34.5 7.5 87 121-214 17-109 (377)
303 cd08429 PBP2_NhaR The C-termin 44.2 68 0.0015 31.0 6.9 71 439-523 13-84 (204)
304 PRK00865 glutamate racemase; P 44.1 70 0.0015 32.9 7.1 39 56-94 59-97 (261)
305 cd08427 PBP2_LTTR_like_2 The C 43.9 60 0.0013 30.6 6.5 72 439-525 13-85 (195)
306 TIGR03884 sel_bind_Methan sele 43.8 62 0.0013 25.6 4.9 44 33-76 9-54 (74)
307 cd08412 PBP2_PAO1_like The C-t 43.8 57 0.0012 30.8 6.3 70 439-525 13-83 (198)
308 cd08450 PBP2_HcaR The C-termin 43.6 68 0.0015 30.3 6.8 70 439-525 13-83 (196)
309 cd00001 PTS_IIB_man PTS_IIB, P 43.6 1.2E+02 0.0026 28.2 7.8 81 121-212 13-93 (151)
310 cd08434 PBP2_GltC_like The sub 43.3 64 0.0014 30.2 6.6 70 439-525 13-83 (195)
311 TIGR00696 wecB_tagA_cpsF bacte 43.2 1.8E+02 0.0039 27.9 9.2 86 119-214 35-121 (177)
312 PRK11917 bifunctional adhesin/ 43.0 54 0.0012 33.6 6.2 70 443-524 161-232 (259)
313 PF04392 ABC_sub_bind: ABC tra 42.9 1.3E+02 0.0028 31.5 9.2 112 2-130 133-247 (294)
314 cd08437 PBP2_MleR The substrat 42.9 71 0.0015 30.3 6.8 71 440-525 14-85 (198)
315 PRK11233 nitrogen assimilation 42.7 1.5E+02 0.0033 31.0 9.8 68 440-524 106-174 (305)
316 COG0725 ModA ABC-type molybdat 42.4 1.6E+02 0.0035 30.1 9.4 178 443-662 46-241 (258)
317 cd08462 PBP2_NodD The C-termin 42.2 70 0.0015 30.5 6.7 68 440-525 14-82 (200)
318 cd08452 PBP2_AlsR The C-termin 41.8 82 0.0018 29.9 7.1 69 440-525 14-83 (197)
319 cd08425 PBP2_CynR The C-termin 41.8 71 0.0015 30.2 6.6 69 440-525 15-84 (197)
320 cd08438 PBP2_CidR The C-termin 41.7 73 0.0016 30.0 6.7 70 439-525 13-83 (197)
321 PLN02821 1-hydroxy-2-methyl-2- 41.6 1.1E+02 0.0023 33.9 8.1 57 38-94 336-394 (460)
322 cd08486 PBP2_CbnR The C-termin 41.3 78 0.0017 30.2 6.8 70 439-525 14-84 (198)
323 cd08413 PBP2_CysB_like The C-t 41.3 78 0.0017 30.1 6.8 71 439-525 13-84 (198)
324 cd08456 PBP2_LysR The C-termin 41.2 71 0.0015 30.1 6.5 69 439-524 13-82 (196)
325 PRK12680 transcriptional regul 41.1 90 0.002 33.3 7.8 70 440-525 107-177 (327)
326 cd00755 YgdL_like Family of ac 41.0 3.4E+02 0.0073 27.3 11.2 84 56-144 94-183 (231)
327 cd08463 PBP2_DntR_like_4 The C 40.9 90 0.002 30.0 7.3 71 439-525 13-84 (203)
328 cd08417 PBP2_Nitroaromatics_li 40.5 70 0.0015 30.3 6.3 70 439-525 13-83 (200)
329 cd08444 PBP2_Cbl The C-termina 40.4 76 0.0016 30.2 6.6 71 439-525 13-84 (198)
330 PRK13010 purU formyltetrahydro 40.3 4.5E+02 0.0098 27.4 12.8 76 64-143 10-103 (289)
331 COG2984 ABC-type uncharacteriz 40.2 2.1E+02 0.0046 30.0 9.6 112 2-130 161-275 (322)
332 cd08461 PBP2_DntR_like_3 The C 39.9 82 0.0018 29.8 6.7 70 439-525 13-83 (198)
333 cd08418 PBP2_TdcA The C-termin 39.7 86 0.0019 29.6 6.9 72 439-525 13-85 (201)
334 cd08436 PBP2_LTTR_like_3 The C 39.5 1E+02 0.0023 28.8 7.4 71 439-525 13-84 (194)
335 cd08414 PBP2_LTTR_aromatics_li 39.4 1.1E+02 0.0024 28.7 7.6 69 440-525 14-83 (197)
336 PRK12684 transcriptional regul 39.3 99 0.0022 32.6 7.7 70 440-525 107-177 (313)
337 PF02879 PGM_PMM_II: Phosphogl 39.1 62 0.0013 27.7 5.0 66 439-505 31-100 (104)
338 cd08426 PBP2_LTTR_like_5 The C 38.9 92 0.002 29.4 6.9 70 439-525 13-83 (199)
339 PRK03692 putative UDP-N-acetyl 38.4 2.2E+02 0.0047 28.9 9.4 87 120-216 93-180 (243)
340 cd08442 PBP2_YofA_SoxR_like Th 38.1 82 0.0018 29.5 6.4 70 439-525 13-83 (193)
341 PRK15424 propionate catabolism 38.1 6.3E+02 0.014 29.1 14.1 134 38-220 40-176 (538)
342 cd08170 GlyDH Glycerol dehydro 38.0 74 0.0016 34.4 6.5 74 122-203 12-87 (351)
343 cd08411 PBP2_OxyR The C-termin 37.9 97 0.0021 29.3 6.9 70 439-525 14-84 (200)
344 PF03830 PTSIIB_sorb: PTS syst 37.7 48 0.001 30.8 4.3 81 121-212 14-94 (151)
345 TIGR00067 glut_race glutamate 37.6 1.2E+02 0.0026 31.0 7.5 127 56-203 52-182 (251)
346 PRK09423 gldA glycerol dehydro 37.6 85 0.0018 34.2 6.9 74 122-203 19-94 (366)
347 cd08460 PBP2_DntR_like_1 The C 37.3 97 0.0021 29.5 6.8 69 439-525 13-82 (200)
348 KOG3857|consensus 37.2 1.5E+02 0.0034 31.1 7.9 90 104-203 37-137 (465)
349 PF00205 TPP_enzyme_M: Thiamin 36.6 42 0.00092 30.4 3.8 73 55-131 2-78 (137)
350 PRK15116 sulfur acceptor prote 36.6 5E+02 0.011 26.8 11.9 84 56-144 113-209 (268)
351 PRK11074 putative DNA-binding 36.1 1.2E+02 0.0027 31.6 7.8 70 441-525 107-177 (300)
352 PRK05452 anaerobic nitric oxid 36.1 5.5E+02 0.012 29.1 13.2 131 68-221 198-338 (479)
353 PRK10991 fucI L-fucose isomera 35.5 5.2E+02 0.011 29.7 12.3 61 34-97 47-109 (588)
354 cd08439 PBP2_LrhA_like The C-t 34.8 1.2E+02 0.0026 28.4 6.9 67 440-525 14-81 (185)
355 PRK10837 putative DNA-binding 34.8 1.3E+02 0.0028 31.1 7.7 69 440-525 103-172 (290)
356 cd08441 PBP2_MetR The C-termin 34.7 1.1E+02 0.0023 29.0 6.7 68 441-525 15-83 (198)
357 TIGR01256 modA molybdenum ABC 34.5 1.1E+02 0.0025 30.0 6.8 69 442-523 9-83 (216)
358 PRK11572 copper homeostasis pr 34.4 4.5E+02 0.0099 26.7 10.7 126 70-215 34-166 (248)
359 cd08449 PBP2_XapR The C-termin 34.3 1.2E+02 0.0027 28.3 7.0 72 439-525 13-85 (197)
360 PRK12679 cbl transcriptional r 34.2 1.4E+02 0.003 31.6 7.9 71 439-525 106-177 (316)
361 PRK12681 cysB transcriptional 33.7 1.5E+02 0.0032 31.6 7.9 70 440-525 107-177 (324)
362 cd08416 PBP2_MdcR The C-termin 33.6 1.1E+02 0.0024 28.8 6.6 72 439-525 13-85 (199)
363 PRK09756 PTS system N-acetylga 33.5 2.7E+02 0.0058 26.1 8.5 81 121-212 18-98 (158)
364 cd06354 PBP1_BmpA_PnrA_like Pe 33.5 5.2E+02 0.011 26.2 13.5 107 2-117 123-232 (265)
365 PRK09508 leuO leucine transcri 33.3 1E+02 0.0022 32.6 6.6 70 439-525 125-195 (314)
366 cd01575 PBP1_GntR Ligand-bindi 33.2 4.2E+02 0.009 26.6 11.1 79 48-130 159-245 (268)
367 PRK10341 DNA-binding transcrip 32.8 1.2E+02 0.0026 31.9 7.1 71 440-525 111-182 (312)
368 cd08423 PBP2_LTTR_like_6 The C 32.8 1.3E+02 0.0028 28.3 6.8 73 439-525 13-88 (200)
369 PRK09860 putative alcohol dehy 32.7 1E+02 0.0022 33.7 6.6 72 122-203 20-98 (383)
370 cd08469 PBP2_PnbR The C-termin 32.2 1.4E+02 0.003 29.0 7.0 70 439-525 13-83 (221)
371 cd08464 PBP2_DntR_like_2 The C 32.0 1.2E+02 0.0026 28.6 6.5 69 439-524 13-82 (200)
372 COG0687 PotD Spermidine/putres 31.8 4.7E+02 0.01 28.3 11.6 190 442-650 45-277 (363)
373 PF13380 CoA_binding_2: CoA bi 31.6 56 0.0012 28.8 3.5 35 192-229 54-88 (116)
374 PF08759 DUF1792: Domain of un 31.6 1.8E+02 0.0038 28.9 7.1 100 109-219 88-192 (225)
375 cd08447 PBP2_LTTR_aromatics_li 31.3 1.3E+02 0.0028 28.3 6.6 69 439-524 13-82 (198)
376 cd08550 GlyDH-like Glycerol_de 30.5 1.2E+02 0.0027 32.6 6.8 74 122-203 12-87 (349)
377 cd08431 PBP2_HupR The C-termin 30.5 1E+02 0.0022 29.0 5.6 71 439-525 13-84 (195)
378 cd08485 PBP2_ClcR The C-termin 30.2 1.3E+02 0.0029 28.5 6.5 69 439-524 14-83 (198)
379 COG2358 Imp TRAP-type uncharac 30.1 4.4E+02 0.0096 27.9 10.2 86 439-538 41-139 (321)
380 TIGR00787 dctP tripartite ATP- 30.0 1.1E+02 0.0023 31.4 5.9 52 443-501 17-68 (257)
381 PRK10918 phosphate ABC transpo 29.5 2E+02 0.0043 31.0 7.9 70 442-524 42-112 (346)
382 cd06304 PBP1_BmpA_like Peripla 29.5 6E+02 0.013 25.6 13.5 124 2-137 122-248 (260)
383 TIGR00655 PurU formyltetrahydr 29.5 6.6E+02 0.014 26.1 12.7 86 64-155 1-104 (280)
384 PF01745 IPT: Isopentenyl tran 29.4 41 0.00089 33.1 2.4 32 64-95 2-33 (233)
385 cd01537 PBP1_Repressors_Sugar_ 29.4 3.3E+02 0.0072 27.0 9.6 115 2-130 120-246 (264)
386 PRK15454 ethanol dehydrogenase 29.0 1.2E+02 0.0027 33.3 6.4 72 122-203 38-116 (395)
387 cd08458 PBP2_NocR The C-termin 28.9 1.7E+02 0.0037 27.6 6.9 69 440-525 14-83 (196)
388 PRK09906 DNA-binding transcrip 28.8 1.5E+02 0.0033 30.7 7.0 69 440-525 104-173 (296)
389 cd06282 PBP1_GntR_like_2 Ligan 28.8 1.5E+02 0.0032 30.0 6.8 55 165-219 27-81 (266)
390 PRK10624 L-1,2-propanediol oxi 28.8 1.3E+02 0.0029 32.8 6.7 73 121-203 18-97 (382)
391 TIGR00288 conserved hypothetic 28.6 2.6E+02 0.0055 26.3 7.3 81 122-213 69-149 (160)
392 cd08443 PBP2_CysB The C-termin 28.3 1.4E+02 0.0031 28.3 6.3 71 439-525 13-84 (198)
393 COG1910 Periplasmic molybdate- 28.2 2E+02 0.0043 28.3 6.7 60 596-663 136-199 (223)
394 cd06301 PBP1_rhizopine_binding 28.1 1.5E+02 0.0033 30.1 6.8 78 135-219 1-83 (272)
395 TIGR00646 MG010 DNA primase-re 28.0 1.6E+02 0.0034 29.2 6.2 58 125-189 146-204 (218)
396 cd08457 PBP2_OccR The C-termin 27.9 1.8E+02 0.0039 27.4 6.9 69 439-524 13-82 (196)
397 PF07881 Fucose_iso_N1: L-fuco 27.6 2.5E+02 0.0054 26.4 6.9 90 34-140 46-137 (171)
398 COG0834 HisJ ABC-type amino ac 27.3 60 0.0013 33.2 3.5 99 681-814 56-156 (275)
399 PRK11062 nhaR transcriptional 27.3 1.5E+02 0.0033 30.9 6.6 73 439-525 106-179 (296)
400 TIGR03728 glyco_access_1 glyco 27.2 2.4E+02 0.0052 28.6 7.3 100 109-219 106-210 (265)
401 TIGR00315 cdhB CO dehydrogenas 27.0 94 0.002 29.2 4.3 40 56-95 19-62 (162)
402 COG0796 MurI Glutamate racemas 27.0 3.2E+02 0.0069 28.1 8.3 37 58-94 61-97 (269)
403 PRK10677 modA molybdate transp 27.0 1.8E+02 0.004 29.7 6.9 71 442-525 42-118 (257)
404 cd08551 Fe-ADH iron-containing 26.8 1.7E+02 0.0036 31.9 7.0 72 122-203 12-90 (370)
405 cd08185 Fe-ADH1 Iron-containin 26.5 1.6E+02 0.0036 32.1 6.9 74 122-203 15-93 (380)
406 PLN03033 2-dehydro-3-deoxyphos 26.4 4.3E+02 0.0093 27.3 9.0 125 65-200 17-164 (290)
407 PF02401 LYTB: LytB protein; 26.4 2.1E+02 0.0045 29.7 7.1 57 38-94 184-241 (281)
408 PF07355 GRDB: Glycine/sarcosi 26.4 1.5E+02 0.0033 31.5 6.0 75 48-122 63-146 (349)
409 PF13685 Fe-ADH_2: Iron-contai 26.2 3.7E+02 0.008 27.4 8.7 95 122-229 8-108 (250)
410 PRK11119 proX glycine betaine 26.0 69 0.0015 34.2 3.7 71 440-523 43-122 (331)
411 cd08183 Fe-ADH2 Iron-containin 25.9 1.7E+02 0.0037 31.9 6.9 72 122-203 12-85 (374)
412 PHA02594 nadV nicotinamide pho 25.8 3.8E+02 0.0082 30.1 9.3 151 64-229 197-371 (470)
413 PF07302 AroM: AroM protein; 25.8 3.6E+02 0.0078 26.8 8.2 81 2-94 127-208 (221)
414 TIGR03339 phn_lysR aminoethylp 25.6 1.6E+02 0.0035 30.1 6.5 67 442-525 100-167 (279)
415 PF03401 TctC: Tripartite tric 25.6 89 0.0019 32.4 4.4 43 440-494 117-159 (274)
416 PF13207 AAA_17: AAA domain; P 25.5 67 0.0015 28.1 3.0 32 65-96 1-32 (121)
417 cd08190 HOT Hydroxyacid-oxoaci 25.4 1.7E+02 0.0038 32.4 6.8 73 121-203 11-90 (414)
418 PRK10481 hypothetical protein; 25.2 3.1E+02 0.0067 27.4 7.7 72 125-206 120-195 (224)
419 PRK12682 transcriptional regul 25.0 2E+02 0.0043 30.2 7.0 71 439-525 106-177 (309)
420 TIGR02709 branched_ptb branche 25.0 7.8E+02 0.017 25.4 10.8 134 1-142 1-156 (271)
421 cd08192 Fe-ADH7 Iron-containin 25.0 1.7E+02 0.0038 31.8 6.7 80 122-211 13-101 (370)
422 PRK15088 PTS system mannose-sp 25.0 3.1E+02 0.0066 29.2 8.2 81 120-211 176-256 (322)
423 cd03770 SR_TndX_transposase Se 24.9 1.9E+02 0.0042 26.3 6.0 51 442-493 24-74 (140)
424 PRK14722 flhF flagellar biosyn 24.9 7.6E+02 0.016 26.9 11.3 12 132-143 166-177 (374)
425 TIGR02638 lactal_redase lactal 24.8 1.7E+02 0.0036 32.0 6.5 73 121-203 17-96 (379)
426 cd06312 PBP1_ABC_sugar_binding 24.7 1.7E+02 0.0037 29.8 6.4 54 165-218 28-83 (271)
427 COG0320 LipA Lipoate synthase 24.7 2.6E+02 0.0057 28.6 7.0 98 113-217 94-210 (306)
428 cd08428 PBP2_IciA_ArgP The C-t 24.6 1.7E+02 0.0037 27.4 6.1 65 442-523 16-80 (195)
429 PRK14723 flhF flagellar biosyn 24.3 4.5E+02 0.0097 31.6 10.0 18 439-456 588-605 (767)
430 PRK10481 hypothetical protein; 24.3 3.1E+02 0.0067 27.4 7.6 48 48-95 166-213 (224)
431 cd08193 HVD 5-hydroxyvalerate 24.0 1.8E+02 0.004 31.7 6.6 72 122-203 15-93 (376)
432 TIGR01744 XPRTase xanthine pho 23.9 1.6E+02 0.0035 28.6 5.5 71 22-94 5-79 (191)
433 PF07905 PucR: Purine cataboli 23.8 2.7E+02 0.0058 24.7 6.5 48 49-96 57-107 (123)
434 TIGR00975 3a0107s03 phosphate 23.6 2.6E+02 0.0056 29.7 7.5 70 441-523 13-86 (314)
435 cd01538 PBP1_ABC_xylose_bindin 23.6 2.3E+02 0.005 29.3 7.2 54 165-218 27-81 (288)
436 TIGR02424 TF_pcaQ pca operon t 23.5 2.2E+02 0.0048 29.6 7.0 70 441-525 108-178 (300)
437 cd06294 PBP1_ycjW_transcriptio 23.2 7E+02 0.015 24.9 10.7 116 2-130 124-251 (270)
438 cd06299 PBP1_LacI_like_13 Liga 23.0 6E+02 0.013 25.4 10.1 78 48-129 159-242 (265)
439 cd06267 PBP1_LacI_sugar_bindin 22.9 1.9E+02 0.0042 28.8 6.4 53 166-219 28-80 (264)
440 cd06305 PBP1_methylthioribose_ 22.8 2.4E+02 0.0052 28.6 7.1 55 165-219 27-82 (273)
441 COG2022 ThiG Uncharacterized e 22.7 6.8E+02 0.015 25.1 9.2 58 12-78 83-142 (262)
442 TIGR02285 conserved hypothetic 22.7 51 0.0011 33.9 1.9 42 682-736 38-80 (268)
443 PRK00002 aroB 3-dehydroquinate 22.6 6.1E+02 0.013 27.4 10.3 87 107-203 8-102 (358)
444 PRK11063 metQ DL-methionine tr 22.6 1.4E+02 0.0029 31.0 5.0 39 442-492 46-85 (271)
445 PF13377 Peripla_BP_3: Peripla 22.5 5.8E+02 0.013 23.1 11.1 115 2-130 11-136 (160)
446 cd08189 Fe-ADH5 Iron-containin 22.5 2.2E+02 0.0047 31.1 6.8 81 121-211 14-103 (374)
447 PRK01045 ispH 4-hydroxy-3-meth 22.4 1.8E+02 0.0039 30.5 5.7 54 41-94 188-242 (298)
448 PF02601 Exonuc_VII_L: Exonucl 22.3 5.1E+02 0.011 27.4 9.5 85 2-94 16-113 (319)
449 cd06289 PBP1_MalI_like Ligand- 22.3 2.3E+02 0.005 28.5 6.8 37 182-218 44-80 (268)
450 PRK15395 methyl-galactoside AB 22.0 6.1E+02 0.013 26.8 10.2 82 48-130 205-293 (330)
451 KOG0025|consensus 22.0 5.7E+02 0.012 26.6 8.8 97 106-218 160-258 (354)
452 PRK02929 L-arabinose isomerase 21.7 1.2E+03 0.026 26.6 12.5 118 14-140 27-149 (499)
453 TIGR02637 RhaS rhamnose ABC tr 21.6 6.2E+02 0.013 26.2 10.1 29 48-76 167-197 (302)
454 PRK00945 acetyl-CoA decarbonyl 21.5 1.4E+02 0.0031 28.3 4.4 42 55-96 25-71 (171)
455 PF12727 PBP_like: PBP superfa 21.4 2.4E+02 0.0051 27.5 6.1 121 373-525 60-180 (193)
456 cd08194 Fe-ADH6 Iron-containin 21.2 2.5E+02 0.0054 30.6 7.0 72 122-203 12-90 (375)
457 PF12849 PBP_like_2: PBP super 21.2 2.6E+02 0.0055 28.8 6.9 73 440-525 23-108 (281)
458 cd03557 L-arabinose_isomerase 21.1 1.2E+03 0.027 26.3 12.5 78 14-97 21-100 (484)
459 cd07372 2A5CPDO_B The beta sub 20.9 6.9E+02 0.015 26.1 9.8 87 48-143 96-190 (294)
460 cd06322 PBP1_ABC_sugar_binding 20.9 3E+02 0.0065 27.8 7.3 54 165-218 27-81 (267)
461 PF00448 SRP54: SRP54-type pro 20.8 1.8E+02 0.0039 28.3 5.2 61 133-203 29-93 (196)
462 COG0563 Adk Adenylate kinase a 20.8 94 0.002 29.8 3.1 29 66-94 3-31 (178)
463 COG0547 TrpD Anthranilate phos 20.8 4.2E+02 0.0092 28.3 8.2 85 54-142 137-223 (338)
464 PRK09875 putative hydrolase; P 20.7 9.6E+02 0.021 25.1 10.8 156 49-218 32-204 (292)
465 cd02071 MM_CoA_mut_B12_BD meth 20.6 5.9E+02 0.013 22.4 9.9 62 145-219 15-80 (122)
466 PRK09986 DNA-binding transcrip 20.6 2.9E+02 0.0062 28.5 7.2 71 440-525 111-182 (294)
467 PRK08286 cbiC cobalt-precorrin 20.5 1.7E+02 0.0036 28.9 4.7 47 48-94 139-189 (214)
468 COG1570 XseA Exonuclease VII, 20.4 5.7E+02 0.012 28.3 9.1 85 2-94 137-231 (440)
469 PRK12360 4-hydroxy-3-methylbut 20.4 1.3E+02 0.0028 31.2 4.2 53 42-94 188-241 (281)
470 TIGR01359 UMP_CMP_kin_fam UMP- 20.3 1E+02 0.0022 29.5 3.3 30 65-94 1-30 (183)
471 PRK00286 xseA exodeoxyribonucl 20.2 4.7E+02 0.01 29.2 9.1 85 2-94 137-230 (438)
No 1
>KOG1054|consensus
Probab=100.00 E-value=4.2e-86 Score=678.96 Aligned_cols=644 Identities=33% Similarity=0.615 Sum_probs=554.0
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHH
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNII 80 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v 80 (821)
|.||.+|+.+.++...|++.|+...|.....--..++|.+++...+..+++..+.+.|...++||.||+|.+.......+
T Consensus 27 iqigglF~~n~~qe~~Afr~~~~~~~~~~~~~~~pf~L~~~~d~~e~a~Sf~~tnafCsq~s~Gv~Aifg~yd~ks~~~l 106 (897)
T KOG1054|consen 27 IQIGGLFPRNTDQEHSAFRFAVQLYNTNQNTTEKPFKLNPHVDNLESANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTL 106 (897)
T ss_pred eeeccccCCcchHHHHHHHHHHHHhhcCCCCCCCCcccccccchhhhhhhHHHHHHHHHHHhhhHhhheecccccchhhh
Confidence 57899999999888999999999988754311234678888888888899999999999999999999999999999999
Q ss_pred HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCC
Q psy16206 81 ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDD 160 (821)
Q Consensus 81 ~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~ 160 (821)
.++|...++|+|+++. |. ....+|.++++|+. ..++++++.||+|.+|..+|+.+.+...++.+++.+.
T Consensus 107 tsfc~aLh~~~vtpsf-p~----~~~~~Fviq~RP~l---~~al~s~i~hy~W~~fv~lyD~~rg~s~Lqai~~~a~--- 175 (897)
T KOG1054|consen 107 TSFCGALHVSFVTPSF-PT----DGDNQFVIQMRPAL---KGALLSLIDHYKWEKFVYLYDTDRGLSILQAIMEAAA--- 175 (897)
T ss_pred hhhccceeeeeecccC-Cc----CCCceEEEEeCchH---HHHHHHHHHhcccceEEEEEcccchHHHHHHHHHHHH---
Confidence 9999999999999865 22 34578999999994 6899999999999999999999999999999999998
Q ss_pred CcCCCCCCeEEEEEcCC--CCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccc
Q psy16206 161 KEIRPGRPSVTIRQLPP--DTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHT 238 (821)
Q Consensus 161 ~~~~~~g~~v~~~~~~~--~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 238 (821)
..++.|+...+.. +...|+.+++.|.....+.|+++|..+....++.|+.+.+....+|||++++ ++...
T Consensus 176 ----~~nw~VtA~~v~~~~d~~~yr~~f~~l~~r~e~rv~iDce~~~~~~il~q~i~~~k~~~~YHYvlaN----l~f~d 247 (897)
T KOG1054|consen 176 ----QNNWQVTAINVGNINDVKEYRMLFEMLDRRQENRVLIDCESERRNRILLQVIELGKHVKGYHYVLAN----LGFTD 247 (897)
T ss_pred ----hcCceEEEEEcCCcccHHHHHHHHHHHhccccceEEEEcccHHHHHHHHHHHHHhhhccceEEEEee----CCCch
Confidence 7799998776543 2444999999999999999999999999999999999999888999999999 88888
Q ss_pred cCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccC-CC-
Q psy16206 239 VDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERK-PL- 316 (821)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~-~~- 316 (821)
.+++.+..+..+++|+++.+.+++-.++|.++|++..... .+..+..++.+.++++|||+.+.++|++.+.++. ..
T Consensus 248 ~dl~~f~~g~aNitgFqivn~~~~~~~k~~~~~~~l~~~~--~~g~~~~~~k~tsAlthDailV~~eaf~~~~~q~~~~~ 325 (897)
T KOG1054|consen 248 IDLERFQHGGANITGFQIVNKNNPMVKKFIQRWKELDERE--YPGASNDPIKYTSALTHDAILVMAEAFRSLRRQRIDIS 325 (897)
T ss_pred hhHHHHhcCCcceeEEEEecCCChHHHHHHHHHhhhcccc--cCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhhhchh
Confidence 8889998889999999999999999999999998876555 3333446788899999999999999999987542 22
Q ss_pred --CCCCCCCC--CCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCcceeccc
Q psy16206 317 --PTPLSCEN--PSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHSRTV 392 (821)
Q Consensus 317 --~~~~~c~~--~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~~~~~~ 392 (821)
....+|.. ..+|..|..+-.+|+++.++|+||+|.||. .|.|.++..+|++++.++.+++|+|+...|+......
T Consensus 326 rRG~~GD~~an~~~p~~qG~~I~ralk~v~~eGLTGniqFd~-~G~R~Nyt~~i~elk~~~~rk~~~W~e~~~fv~~~t~ 404 (897)
T KOG1054|consen 326 RRGNAGDCLANPAVPWEQGIDIERALKQVQVEGLTGNIQFDK-YGRRTNYTIDIVELKSNGSRKVGYWNEGEGFVPGSTV 404 (897)
T ss_pred ccCCCccccCCCCCchhcchhHHHHHHheeecccccceeecc-cCccccceEEEEEeccCCcceeeeecccCceeecccc
Confidence 45668854 568999999999999999999999999999 9999999999999999999999999999999876554
Q ss_pred cccchhhhhhccCceEEEEeeccceeeeeecCCCcee-ecC----CCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcc
Q psy16206 393 EQMDKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMM-KNP----ETGELY-GYSVDLIKMIANELNFTYKFVLERENTY 466 (821)
Q Consensus 393 ~~~~~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~-~~~----~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~ 466 (821)
. +...-....++++++|.|. ...||.+ +.+ .|+.+| |||+||+.+||+..+.+|++..++|++|
T Consensus 405 a-~~~~d~~~~~n~tvvvtti---------L~spyvm~kkn~~~~egn~ryEGyCvdLa~~iAkhi~~~Y~l~iv~dgky 474 (897)
T KOG1054|consen 405 A-QSRNDQASKENRTVVVTTI---------LESPYVMLKKNHEQLEGNERYEGYCVDLAAEIAKHIGIKYKLFIVGDGKY 474 (897)
T ss_pred c-cccccccccccceEEEEEe---------cCCchhHHHhhHHHhcCCcccceeHHHHHHHHHHhcCceEEEEEecCCcc
Confidence 3 2234445667789999999 7788877 322 344679 9999999999999999999999999999
Q ss_pred cccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHH
Q psy16206 467 GTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMA 546 (821)
Q Consensus 467 g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~ 546 (821)
|+++++..-|++|+++|..|++|++++++++|.+|++.+|||.|+|..+++|+.++|..+.++.++|++|+..++|+|++
T Consensus 475 GardaD~k~WnGMvGeLv~grAdiavApLTIt~~REeviDFSKPfMslGISIMIKKPqKsk~gVFSFldPLa~eIWm~iv 554 (897)
T KOG1054|consen 475 GARDADTKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIV 554 (897)
T ss_pred cccCCCcccccchhHHHhcCccceEEeeeeeehhhhhhhccccchhhcCeEEEEeCcccCCCCeeeecchhHHHHHHHHH
Confidence 99999555599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhh
Q psy16206 547 TAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEV 626 (821)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~ 626 (821)
.+++|++.++|++.||+||+ |..-+.
T Consensus 555 faYiGVSvvlFLVSrFSPYE-----------------wh~Ee~------------------------------------- 580 (897)
T KOG1054|consen 555 FAYIGVSVVLFLVSRFSPYE-----------------WHTEEF------------------------------------- 580 (897)
T ss_pred HHHhcceEEEEEEeccCchh-----------------eecccc-------------------------------------
Confidence 99999999999999999971 000000
Q ss_pred hhcCCceeecceecCCCcccccCCchhhcccccceeEEEEeecCCccccccCCCCCccceecchHHHHHhhcCceEEEEE
Q psy16206 627 EKNCDLMQVGGLLDSKGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVL 706 (821)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~a~~k~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~~g~~~d~~~~~~~~~~~~~~~~~ 706 (821)
+ +|.... .
T Consensus 581 ---------------------------------------~--rg~~t~-------------~------------------ 588 (897)
T KOG1054|consen 581 ---------------------------------------E--RGRFTP-------------S------------------ 588 (897)
T ss_pred ---------------------------------------c--cCCCCC-------------C------------------
Confidence 0 010000 0
Q ss_pred ccCCcccccCCCCCcchhhHHHHhhccceeeeehhhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy16206 707 ERENTYGTLNPQTGKWNGLIGELQEQVDTFILFFIYSILFFIYTFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTN 786 (821)
Q Consensus 707 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~ 786 (821)
...+.++.+ +..|-.+-+.|||+-| +.||++|+|++.++||||+||++|+|||||+||||+
T Consensus 589 ~~~NeFgif---NsLWFsLgAFMQQG~D----------------I~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTv 649 (897)
T KOG1054|consen 589 DPPNEFGIF---NSLWFSLGAFMQQGCD----------------ISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 649 (897)
T ss_pred CCCccchhh---HHHHHHHHHHHhcCCC----------------CCccccccceeccchhhhhhhhhhhhhhHHHHHHhH
Confidence 000112222 2457777777777776 589999999999999999999999999999999999
Q ss_pred cCCCCCCCChhhhhhcCceeEEEEecCcccccccC
Q psy16206 787 TRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFKV 821 (821)
Q Consensus 787 ~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~~ 821 (821)
+||.+||.|.||||+|++|.||++.++||..||+.
T Consensus 650 ErMvsPIESaEDLAkQteIaYGt~~~GSTkeFFr~ 684 (897)
T KOG1054|consen 650 ERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRR 684 (897)
T ss_pred HhhcCcchhHHHHhhcceeeeeecCCCchHHHHhh
Confidence 99999999999999999999999999999999973
No 2
>KOG4440|consensus
Probab=100.00 E-value=1.6e-56 Score=462.86 Aligned_cols=606 Identities=21% Similarity=0.361 Sum_probs=461.0
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEE--EEEEecCCChhHHHHHHHH-HhhcCeEEEE-c-CCCcc-
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEP--IVQHVENYDSLHTAKLMCN-ATSEGIAAIF-G-PQSIE- 75 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~--~~~D~~~~~~~~a~~~a~~-li~~~V~aii-G-p~~s~- 75 (821)
+||.++.. ...+.-+..++.++|++.+ ..++.+ .....+ .++.+.+-.+|+ |++..|.||+ . |.+|.
T Consensus 37 nig~Vlst--~~~ee~F~~t~~hln~~~~----s~k~~~~aksv~~d-~n~i~t~~~VC~~li~~~vyav~vSh~~Ts~d 109 (993)
T KOG4440|consen 37 NIGAVLST--RKHEEMFRETVNHLNKRHG----SWKIQLNAKSVTHD-PNAIQTALSVCEDLISSQVYAVLVSHPPTSND 109 (993)
T ss_pred eeeeeeec--hhHHHHHHHHHHHhhcccc----ceEEEEccccccCC-CcHHHHHHHHHHHHHhhheeEEEecCCCCCCc
Confidence 56666543 3456679999999998865 334444 222112 578888888888 5555888877 2 22222
Q ss_pred --hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHH
Q psy16206 76 --NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVL 153 (821)
Q Consensus 76 --~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~ 153 (821)
.-.++.-.+..+.+|++....-.+.++++..++.|+|+.|++.+|+.+..+++.+|.|++|.++.++|...++.++.+
T Consensus 110 ~f~p~~vSYT~gFY~iPV~G~~~Rda~fSdKnIh~sFlRtvpPyshqa~VwleMl~~~~y~~vi~l~s~d~~gra~~~r~ 189 (993)
T KOG4440|consen 110 HFTPTPVSYTAGFYRIPVLGLTTRDAIFSDKNIHLSFLRTVPPYSHQASVWLEMLRVYSYNHVILLVSDDHEGRAAQKRL 189 (993)
T ss_pred ccccccceeeccceeeeeeeeeehhhhhccCceeeeEeecCCCccchhHHHHHHHHHhhcceEEEEEcccccchhHHhHH
Confidence 234455566789999999977777789999999999999999999999999999999999999999887555554444
Q ss_pred HhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccccc
Q psy16206 154 ENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYW 233 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~ 233 (821)
+... ++.+ . ..-.+..++|+..++.+.|.++|+..++++++....+++..+++.|.+++|++++++||++.
T Consensus 190 qt~~-e~~~--~--~~e~v~~f~p~~~~~t~~l~~~k~~~~rv~~~~as~dDA~~ifr~Ag~lnmTG~G~VWiV~E---- 260 (993)
T KOG4440|consen 190 QTLL-EERE--S--KAEKVLQFDPGTKNVTALLMEAKELEARVIILSASEDDAATIFRAAGMLNMTGSGYVWIVGE---- 260 (993)
T ss_pred HHHH-HHHh--h--hhhhheecCcccchHHHHHhhhhhhhheeEEeecccchHHHHHHhhhhhcccCceEEEEEec----
Confidence 4332 0000 1 11124567888899999999999999999999999999999999999999999999999988
Q ss_pred ccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy16206 234 INAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGER 313 (821)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~ 313 (821)
-..... .-.+|++|+++....+ ..+..-|++.+++.|++.+.++
T Consensus 261 ~a~~~n------n~PdG~LGlqL~~~~~------------------------------~~~hirDsv~vlasAv~e~~~~ 304 (993)
T KOG4440|consen 261 RAISGN------NLPDGILGLQLINGKN------------------------------ESAHIRDSVGVLASAVHELLEK 304 (993)
T ss_pred cccccC------CCCCceeeeEeecCcc------------------------------ccceehhhHHHHHHHHHHHHhh
Confidence 221111 1136889998865432 1255679999999999999988
Q ss_pred CCC--CCCCCCCCCCCCCCchhHHHhhhhce-eccceeeEEEeCCCCccceeEEEEEEEee-cceEEEEEEecCCCc---
Q psy16206 314 KPL--PTPLSCENPSSWQHGLGIGNLMKSIT-IDGMTGRINLDSQTGRRNSFSLEFVEYVS-DQWKVLGTWNTAFGL--- 386 (821)
Q Consensus 314 ~~~--~~~~~c~~~~~~~~g~~l~~~l~~~~-~~G~tG~i~fd~~~g~~~~~~~~i~~~~~-~~~~~vG~w~~~~gl--- 386 (821)
+.+ +|...|++...|..|..+...+...+ ..|.||++.|++ +|+|....|+|+++.. ...+.+|.++...-.
T Consensus 305 e~I~~~P~~c~d~~~~w~~g~~l~~~l~s~~~~~g~TgrV~Fnd-~gdRi~a~YdiiN~hq~rk~Vg~~~yd~~r~~~nd 383 (993)
T KOG4440|consen 305 ENITDPPRGCVDNTNIWKTGPLLKRVLMSSKYADGVTGRVEFND-DGDRIFANYDIINLHQNRKLVGVGIYDGTRVIPND 383 (993)
T ss_pred ccCCCCCCcccCccchhcccHHHHHHHhhhcccCCcceeEEEcC-CCceeeccceeEehhhhhhhhhhccccceeeccCC
Confidence 888 66677778889999999999998766 589999999999 9999999999999963 345666666653221
Q ss_pred -ceeccccccchhhhhhccCceEEEEeeccceeeeeecCCCceeecC---CCC---------------------------
Q psy16206 387 -NHSRTVEQMDKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNP---ETG--------------------------- 435 (821)
Q Consensus 387 -~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~---~~~--------------------------- 435 (821)
.+.+++.. ......++-+.+|++.|. ..+||+|..+ ++.
T Consensus 384 ~~IiWpGg~-~~KP~gi~~pthLrivTi---------~~~PFVYv~p~~sd~~c~eef~~~~d~~~k~~c~gpn~s~p~s 453 (993)
T KOG4440|consen 384 RKIIWPGGE-TEKPRGIQMPTHLRIVTI---------HQEPFVYVKPTLSDGTCKEEFTVNGDPVKKVICTGPNDSSPGS 453 (993)
T ss_pred ceeecCCCC-cCCCccccccceeEEEEe---------ccCCeEEEecCCCCcchhhhccccCCcccceeecCCCCCCCCC
Confidence 12222211 134455677789999999 8999999431 100
Q ss_pred ----Cce---eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCC-------CCcchHHHHHHHcCCcceEEeccccchhh
Q psy16206 436 ----ELY---GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQ-------TGKWNGLIGELQEQRADLAICDLTITSER 501 (821)
Q Consensus 436 ----~~~---G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~-------~~~~~~~~~~l~~g~~Di~~~~~~~t~~R 501 (821)
..+ |||+||+-++++.+|++|+...++|+++|.+... ...|++++++|.+|++||+++++++++||
T Consensus 454 ~~~t~~fCC~G~cIDLLi~Ls~~~Nftyd~~l~~dg~fg~~~~vnnsseT~~kew~G~iGEL~~~~ADMivaplTINpER 533 (993)
T KOG4440|consen 454 PRHTVPFCCYGFCIDLLIKLSRTMNFTYDVHLVADGKFGTQERVNNSSETNKKEWNGMIGELLSGQADMIVAPLTINPER 533 (993)
T ss_pred cccCcchhhhHHHHHHHHHHHHhhcceEEEEEeecccccceeeeecccccccceehhhhhhhhCCccceEeeceeeChhh
Confidence 122 9999999999999999999999999999887432 24699999999999999999999999999
Q ss_pred hcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecCCChHHHH
Q psy16206 502 RAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQ 581 (821)
Q Consensus 502 ~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (821)
+++++||.|+-..++.|+.+++.+ ...+.+|++||+..+|+++..+.+.+.+.+|++++++|++|-
T Consensus 534 a~yieFskPfkYqGitILeKk~~r-~Stl~SFlQPfqstLW~lv~~SVhvVal~lYlLDrfSPFgRF------------- 599 (993)
T KOG4440|consen 534 AQYIEFSKPFKYQGITILEKKEIR-RSTLDSFLQPFQSTLWLLVGLSVHVVALMLYLLDRFSPFGRF------------- 599 (993)
T ss_pred hhheeccCcccccceEEEeeCCCC-CchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccce-------------
Confidence 999999999999999999999876 567889999999999999999999999999999999997211
Q ss_pred HHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeecceecCCCcccccCCchhhcccccce
Q psy16206 582 RMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAKFSFGF 661 (821)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~l~~~in~al 661 (821)
+... .-++.++++
T Consensus 600 ------k~~d---s~~~ee~al---------------------------------------------------------- 612 (993)
T KOG4440|consen 600 ------KVND---SEEEEEDAL---------------------------------------------------------- 612 (993)
T ss_pred ------eecc---Cccchhhhc----------------------------------------------------------
Confidence 0000 000000000
Q ss_pred eEEEEeecCCccccccCCCCCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeeehh
Q psy16206 662 AKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILFFI 741 (821)
Q Consensus 662 ~~l~~~~~g~~~~i~~k~~g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 741 (821)
.+...+||.+-+..+ .++
T Consensus 613 -------------------------------nlssAmWF~WGVLLN-----------------------SGi-------- 630 (993)
T KOG4440|consen 613 -------------------------------NLSSAMWFSWGVLLN-----------------------SGI-------- 630 (993)
T ss_pred -------------------------------chhhhHHHHhHhhhc-----------------------ccc--------
Confidence 011112222111111 111
Q ss_pred hhhhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhh--hh-cCceeEEEEecCccccc
Q psy16206 742 YSILFFIYTFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDL--AK-AGRIKYGCVEMGSTRNF 818 (821)
Q Consensus 742 ~~~~~~~~~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL--~~-~~~~~~~~~~~~~~~~~ 818 (821)
+--.||++|+|++..+|+=|++|++++|||||+|||...+.+..+..+.|= .+ .....+||+++|+...|
T Consensus 631 -------gEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLVLdrPe~~ltGinDpRLRNps~nf~~aTVk~SsVd~Y 703 (993)
T KOG4440|consen 631 -------GEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLDRPEERLTGINDPRLRNPSDNFIYATVKQSSVDIY 703 (993)
T ss_pred -------CCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhheeecCccccccCCCCccccCcccceeEEEecCccHHHH
Confidence 124799999999999999999999999999999999999999999988874 33 23489999999999999
Q ss_pred cc
Q psy16206 819 FK 820 (821)
Q Consensus 819 ~~ 820 (821)
||
T Consensus 704 Fr 705 (993)
T KOG4440|consen 704 FR 705 (993)
T ss_pred HH
Confidence 97
No 3
>KOG1053|consensus
Probab=100.00 E-value=3.4e-49 Score=423.65 Aligned_cols=573 Identities=23% Similarity=0.376 Sum_probs=448.9
Q ss_pred cCCChhHHHHHHHHHhhc-CeEEEEc-CCCc--chHHHHHHHhccCCCceeeeccCCCC-CCCCCCCccEEEEecChhhH
Q psy16206 46 ENYDSLHTAKLMCNATSE-GIAAIFG-PQSI--ENRNIIESMCQMFDIPHVEAFWDPNK-YFIPTNGVHGVNVYPESHLI 120 (821)
Q Consensus 46 ~~~~~~~a~~~a~~li~~-~V~aiiG-p~~s--~~~~~v~~i~~~~~iP~is~~~~~~~-~~~~~~~~~~~r~~p~~~~~ 120 (821)
+..||..-....|+++.. +|.+|+= +.+. +.+..+--++...+||+|+.....+. .+.+.....++++.|+...|
T Consensus 81 N~tdPkSll~~vC~lvs~~~V~glvf~d~s~~~avaq~LDfiSs~t~iPIisi~gg~a~~~~~kd~gs~flQlg~Sieqq 160 (1258)
T KOG1053|consen 81 NTTDPKSLLTQVCDLVSGARVHGLVFEDDSDTEAVAQILDFISSQTHIPIISIHGGAAMVLTPKDLGSTFLQLGPSIEQQ 160 (1258)
T ss_pred CCCCHHHHHHHHHhhhhhcceeEEEeecCccchHHHHHHHHHHHhcCCcEEEEecCccceecCCCCcceEEEeCCcHHHH
Confidence 558999999999999988 9999884 4443 33333444667899999999765443 23344445799999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEE-EEEcCCCCCC-hHHHHHHhhcCCCcEEE
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVT-IRQLPPDTDD-YRPLLKEIKNSSESHIL 198 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d-~~~~l~~lk~~~~~~iv 198 (821)
++++.++++.|+|..|+++....++...+-.++++.. +. -..|+.+. +....+..+| ......++|+.++.+|+
T Consensus 161 a~Vml~iL~~ydW~~Fs~vtt~~pg~~~f~~~ir~~~-d~---s~vgwe~i~v~~l~~s~~d~~a~~q~qLkki~a~Vil 236 (1258)
T KOG1053|consen 161 AQVMLKILEEYDWYNFSLVTTQFPGNRTFVSLIRQTN-DN---SHVGWEMINVLTLDPSTDDLLAKLQAQLKKIQAPVIL 236 (1258)
T ss_pred HHHHHHHHHHcCcceeEEEEeecCchHHHHHHHHHhh-hh---ccccceeeeeeecCCCCCchHHHHHHHHHhcCCcEEE
Confidence 9999999999999999999998887666666555543 00 02355543 3345555444 44455667777899999
Q ss_pred EeCChhHHHHHHHHHHHccccCcceEEEEeccccccccccc-CcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhc
Q psy16206 199 LDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTV-DFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENE 277 (821)
Q Consensus 199 l~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 277 (821)
+.|..+++..+++.|.++|+++.+|.||++. +..... ....+ ..|++...... |+
T Consensus 237 lyC~~eea~~IF~~A~q~Gl~g~~y~Wi~pq----lv~g~~~~pa~~---P~GLisv~~~~------------w~----- 292 (1258)
T KOG1053|consen 237 LYCSREEAERIFEEAEQAGLTGPGYVWIVPQ----LVEGLEPRPAEF---PLGLISVSYDT------------WR----- 292 (1258)
T ss_pred EEecHHHHHHHHHHHHhcCCcCCceEEEeeh----hccCCCCCCccC---ccceeeeeccc------------hh-----
Confidence 9999999999999999999999999999977 221110 01111 13433332211 11
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHhhccCCC--CCCCCCCCC--CCCCCchhHHHhhhhceeccceeeEEEe
Q psy16206 278 RGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKPL--PTPLSCENP--SSWQHGLGIGNLMKSITIDGMTGRINLD 353 (821)
Q Consensus 278 ~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~--~~~~~c~~~--~~~~~g~~l~~~l~~~~~~G~tG~i~fd 353 (821)
.......-|++-+++.|...+...... ++..+|... .....+..+...|.++.|+| ++++|+
T Consensus 293 ------------~~l~~rVrdgvaiva~aa~s~~~~~~~lp~~~~~C~~~~~~~~~~~~~l~r~l~NvT~~g--~~lsf~ 358 (1258)
T KOG1053|consen 293 ------------YSLEARVRDGVAIVARAASSMLRIHGFLPEPKMDCREQEETRLTSGETLHRFLANVTWDG--RDLSFN 358 (1258)
T ss_pred ------------hhHHHHHhhhHHHHHHHHHHHHhhcccCCCcccccccccCccccchhhhhhhhheeeecc--cceeec
Confidence 123456779999999999998766554 788999763 34667889999999999999 799999
Q ss_pred CCCCccceeEEEEEEEee-cceEEEEEEecCCCcceeccc-cccchhhhhhccCceEEEEeeccceeeeeecCCCceeec
Q psy16206 354 SQTGRRNSFSLEFVEYVS-DQWKVLGTWNTAFGLNHSRTV-EQMDKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKN 431 (821)
Q Consensus 354 ~~~g~~~~~~~~i~~~~~-~~~~~vG~w~~~~gl~~~~~~-~~~~~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~ 431 (821)
+ +|..+++...++.... ..|..||.|+.. .|.|..+. +...+.+...-...+|+|.|. ..+||++.+
T Consensus 359 ~-~g~~v~p~lvvI~l~~~r~We~VG~We~~-~L~M~y~vWPr~~~~~q~~~d~~HL~VvTL---------eE~PFVive 427 (1258)
T KOG1053|consen 359 E-DGYLVHPNLVVIDLNRDRTWERVGSWENG-TLVMKYPVWPRYHKFLQPVPDKLHLTVVTL---------EERPFVIVE 427 (1258)
T ss_pred C-CceeeccceEEEecCCCcchheeceecCC-eEEEeccccccccCccCCCCCcceeEEEEe---------ccCCeEEEe
Confidence 9 9998888888776654 459999999985 45565433 444455666666679999999 899999943
Q ss_pred CC---CC----------------------------Cce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHH
Q psy16206 432 PE---TG----------------------------ELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479 (821)
Q Consensus 432 ~~---~~----------------------------~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 479 (821)
+- ++ ..- |||+||++.||+..||+|++..+.+++||.. .++.|++|
T Consensus 428 ~vDP~t~~C~~ntvpc~s~~~~t~ss~~~~~~tvKkCCkGfCIDiLkKlA~~v~FtYDLYlVtnGKhGkk--~ng~WnGm 505 (1258)
T KOG1053|consen 428 DVDPLTQTCVRNTVPCRSQLNSTFSSGDEANRTVKKCCKGFCIDILKKLARDVKFTYDLYLVTNGKHGKK--INGVWNGM 505 (1258)
T ss_pred cCCCCcCcCCCCCCcchhhhhhccCCCccCCchHHhhhhhhhHHHHHHHHhhcCcceEEEEecCCcccce--ecCcchhh
Confidence 21 00 123 9999999999999999999999999999986 36799999
Q ss_pred HHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHH-HHHHHHHHh
Q psy16206 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAY-LGVSLLLFF 558 (821)
Q Consensus 480 ~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~-~~~~~~~~~ 558 (821)
+++|..+++||+++.+++++||.+.+|||.||..++++++++..+. ..+..+|+.||...||+++.... +.+.+..|+
T Consensus 506 IGev~~~rA~MAVgSltINeeRSevVDFSvPFveTgIsVmV~rsng-tvspsAFLePfs~svWVmmFVm~livaai~vFl 584 (1258)
T KOG1053|consen 506 IGEVVYQRADMAVGSLTINEERSEVVDFSVPFVETGISVMVARSNG-TVSPSAFLEPFSPSVWVMMFVMCLIVAAITVFL 584 (1258)
T ss_pred HHHHHhhhhheeeeeeEechhhhccccccccccccceEEEEEecCC-ccCchhhcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877 45678999999999999887666 455666789
Q ss_pred hhhcCCCc--------------------------------------------ce--------------eEee--------
Q psy16206 559 LARISSGS--------------------------------------------RL--------------RYSA-------- 572 (821)
Q Consensus 559 ~~~~~~~~--------------------------------------------~~--------------~~~~-------- 572 (821)
++.++|++ || +|||
T Consensus 585 FEy~SPvgyn~~l~~gkkpggp~FtigkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIq 664 (1258)
T KOG1053|consen 585 FEYFSPVGYNRNLANGKKPGGPSFTIGKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ 664 (1258)
T ss_pred HhhcCcccccccccCCCCCCCcceehhhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999992 11 4443
Q ss_pred -------------------------------cCC----ChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEe
Q psy16206 573 -------------------------------KNS----NVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFM 617 (821)
Q Consensus 573 -------------------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~ 617 (821)
..+ -...|.+|+++|.. ......++++..+++ |+.||||+
T Consensus 665 E~~~d~vSGlsD~KfqrP~dq~PpFRFGTVpngSTE~niR~Nyp~MHeYM~k----yNq~~v~dal~sLK~-gKLDAFIy 739 (1258)
T KOG1053|consen 665 EEYYDTVSGLSDPKFQRPHDQYPPFRFGTVPNGSTERNIRSNYPEMHEYMVK----YNQPGVEDALESLKN-GKLDAFIY 739 (1258)
T ss_pred hhhhhhccccCcccccCccccCCCcccccCCCCchhhhHHhccHHHHHHHHH----hccCchHHHHHHHhc-ccchhHHH
Confidence 111 13346778877776 334577899999999 99999999
Q ss_pred cccchhhhhhhc--CCceeec--ceecCCCcccccCC-chhhcccccceeEEEEeecCCccccccCCCC
Q psy16206 618 ESTGIEYEVEKN--CDLMQVG--GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETG 681 (821)
Q Consensus 618 ~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g 681 (821)
|..+++|.+.+. |.+..++ .++...+|+|+++| ++|...||.+|.|... +|++++|.+.|+.
T Consensus 740 DaAVLnY~agkDegCKLvTIGsgKvFAttGYGIal~k~Spwkr~IdlallQy~g--dGeme~Le~~Wlt 806 (1258)
T KOG1053|consen 740 DAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALPKNSPWKRQIDLALLQYLG--DGEMEMLETLWLT 806 (1258)
T ss_pred HHHHHHHhhccCCCceEEEecCCceeeecceeeecCCCCcchhhHHHHHHHHhc--cchHHHHHHHHhh
Confidence 999999999874 8999999 89999999999999 9999999999999999 9999999999984
No 4
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=100.00 E-value=1.6e-49 Score=426.69 Aligned_cols=362 Identities=23% Similarity=0.438 Sum_probs=319.4
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCc-eEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPD-IILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNII 80 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~-~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v 80 (821)
.||+||+.+..+.+.||+.|++.+|.... +++. .+|...+...+..|++++.+++|+|+++||.|||||.++.++.++
T Consensus 1 ~iG~iF~~~~~~~~~aF~~Av~~~N~~~~-~~~~~~~l~~~i~~~~~~dsf~~~~~~C~l~~~GV~AIfGp~~~~s~~~v 79 (372)
T cd06387 1 SIGGLFMRNTVQEHSAFRFAVQLYNTNQN-TTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTL 79 (372)
T ss_pred CcceeecCCcHHHHHHHHHHHHHhccccc-ccccCeEEEEeeEEecCCChHHHHHHHHHHhhcccEEEEecCCHhHHHHH
Confidence 48999998888889999999999999875 4554 699999988888999999999999999999999999999999999
Q ss_pred HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCC
Q psy16206 81 ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDD 160 (821)
Q Consensus 81 ~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~ 160 (821)
+++|+.++||+|.++.. . ....+|.+++.|+ +++|+++++++|+|++|.++|+++++...++++++...
T Consensus 80 ~s~c~~~~iP~i~~~~~-~----~~~~~~~l~l~P~---l~~Ai~diI~~~~Wr~~~~iYd~d~gl~~Lq~L~~~~~--- 148 (372)
T cd06387 80 TSFCGALHTSFITPSFP-T----DADVQFVIQMRPA---LKGAILSLLAHYKWEKFVYLYDTERGFSILQAIMEAAV--- 148 (372)
T ss_pred HHhhccccCCeeeeCCC-C----CCCCceEEEEChh---HHHHHHHHHHhcCCCEEEEEecCchhHHHHHHHHHhhc---
Confidence 99999999999998543 1 2456789999999 68999999999999999999988889999999999887
Q ss_pred CcCCCCCCeEEEEEcCC--CCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccc
Q psy16206 161 KEIRPGRPSVTIRQLPP--DTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHT 238 (821)
Q Consensus 161 ~~~~~~g~~v~~~~~~~--~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 238 (821)
..+..|....+.+ ...+|+..+++|++.+.++||++|+++.+..+|+||.++||++.+|+||+++ ++...
T Consensus 149 ----~~~~~V~~~~v~~~~~~~~~~~~l~el~~~~~r~iIld~s~~~~~~il~~a~e~gM~~~~y~~ilt~----ld~~~ 220 (372)
T cd06387 149 ----QNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLAN----LGFTD 220 (372)
T ss_pred ----cCCceEEEEEeccCCchHHHHHHHHHhccccceEEEEECCHHHHHHHHHHHHHcCccccceEEEEec----CCccc
Confidence 6677777665432 2568999999999999999999999999999999999999999999999999 88888
Q ss_pred cCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCCCC-
Q psy16206 239 VDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKPLP- 317 (821)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~- 317 (821)
.+++++.+...|++|+++..++++..++|.++|++..... .+..+..+++.+++++||||+++|.|++++..+....
T Consensus 221 ~dl~~~~~g~~NItg~rl~~~~~~~~~~f~~~w~~~~~~~--~~~~~~~~l~~~~al~yDaV~~~A~A~~~l~~~~~~~~ 298 (372)
T cd06387 221 ISLERVMHGGANITGFQIVNNENPMVQQFLQRWVRLDERE--FPEAKNSPLKYTSALTHDAILVIAEAFRYLRRQRVDVS 298 (372)
T ss_pred ccHHHhccCCcceeEEEEecCCCchHHHHHHHHHhCCccc--CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8888888888899999999999999999999998765444 2333344577899999999999999999985432112
Q ss_pred ---CCCCCCC--CCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCc
Q psy16206 318 ---TPLSCEN--PSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGL 386 (821)
Q Consensus 318 ---~~~~c~~--~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl 386 (821)
.+++|.. ..+|..|..|+++|++++|+|+||++.|++ +|+|.++.++|+++.+.++++||.|++..|+
T Consensus 299 ~~~~~~~C~~~~~~~W~~G~~l~~~ik~v~~~GLTG~i~F~~-~G~R~~~~ldIinl~~~g~~kIG~W~~~~g~ 371 (372)
T cd06387 299 RRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDT-YGRRTNYTIDVYEMKPSGSRKAGYWNEYERF 371 (372)
T ss_pred cCCCCCCcCCCCCCCccchHHHHHHHHhcccCCCccceeeCC-CCCcccceEEEEEecCCCceeEEEECCCCCc
Confidence 3448965 567999999999999999999999999998 9999999999999999999999999999987
No 5
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=100.00 E-value=2e-49 Score=426.74 Aligned_cols=369 Identities=17% Similarity=0.299 Sum_probs=310.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIE 81 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~ 81 (821)
.||+||+.+.++.+.|+++||+++|.+.. ++++.+|.+.+...+.+|++.+.+++|+|+++||.|||||.++..+..++
T Consensus 1 ~iG~if~~~~~~~~~af~~Av~~~N~~~~-~l~~~~L~~~~~~~~~~d~F~~~~~ac~l~~~gV~AI~Gp~s~~~a~~v~ 79 (400)
T cd06392 1 HIGAIFEENAAKDDRVFQLAVSDLSLNDD-ILQSEKITYSIKSIEANNPFQAVQEACDLMTQGILALVTSTGCASANALQ 79 (400)
T ss_pred CeeeccCCCchHHHHHHHHHHHHhccCcc-ccCCceEEEEEEecCCCChhHHHHHHHHHHhcCeEEEECCCchhHHHHHH
Confidence 59999999888889999999999999887 78999999999444779999999999999999999999999999999999
Q ss_pred HHhccCCCceeeeccCCC--------CCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHH
Q psy16206 82 SMCQMFDIPHVEAFWDPN--------KYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVL 153 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~--------~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~ 153 (821)
++|+.++||+|+++..+. ........+|.+.+.|+ ..+.+|+++++.+|+|++|++||++|++...+++++
T Consensus 80 sic~~l~VP~is~~~~~~~~~~~~~~~~p~~~~~~~~~~lrp~-~~~~~Ai~dlV~~~~W~~v~~iYD~d~gl~~lq~L~ 158 (400)
T cd06392 80 SLTDAMHIPHLFVQRNSGGSPRTACHLNPSPEGEEYTLAARPP-VRLNDVMLKLVTELRWQKFIVFYDSEYDIRGLQSFL 158 (400)
T ss_pred HHhccCcCCcEeecccccccccccccCCCCcCcCceeEEecCc-hHHHHHHHHHHHhCCCcEEEEEEECcccHHHHHHHH
Confidence 999999999999855321 00113455778888887 568899999999999999999998888999999999
Q ss_pred HhcCCCCCcCCCCCCeEEEEEcCCC-CCChHHHHHHhhcCC-------CcEEEEeCChhHHHHHHHHHHHccccCcceEE
Q psy16206 154 ENAHDDDKEIRPGRPSVTIRQLPPD-TDDYRPLLKEIKNSS-------ESHILLDCSMDKTVTILKQAKEVHLMGDYQNY 225 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~~~~~~~-~~d~~~~l~~lk~~~-------~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~ 225 (821)
+... ..+..|.+..+..+ +.++++.++.++... .++||++|+++.+..+++||.++||++.+|+|
T Consensus 159 ~~~~-------~~~~~I~~~~v~~~~~~~~~~~l~~~~~~~L~~~~~~~r~iVv~~s~~~~~~il~qA~~lgM~~~~y~w 231 (400)
T cd06392 159 DQAS-------RLGLDVSLQKVDRNISRVFTNLFTTMKTEELNRYRDTLRRAILLLSPRGAQTFINEAVETNLASKDSHW 231 (400)
T ss_pred HHHh-------hcCceEEEEEcccCcchhhhhHHHHHHHhhhhhccccceEEEEEcCcHHHHHHHHHHHHhCcccCCeEE
Confidence 9887 66788887776543 336888777777655 68999999999999999999999999999999
Q ss_pred EEecccccccccccCcccccCCce-eeEEEEeecCCChhHHHhh----hhhhhhhhcccccccccccccchhHHHHHHHH
Q psy16206 226 ILSLTSYWINAHTVDFQDFQPGYA-NITTVRMINPTNPHIRSIM----NGWIYEENERGRSLNVRAETVKIEAALMYDAV 300 (821)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv 300 (821)
|+++ ++....+++.+.++.. ++++++.+.+.+....+|. .+|+++...+.. .....+.++++++||||
T Consensus 232 I~t~----~~~~~~dl~~~~~g~~~niT~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~l~~~aalayDaV 304 (400)
T cd06392 232 VFVN----EEISDTEILELVHSALGRMTVIRQIFPLSKDNNQRCIRNNHRISSLLCDPQE---GYLQMLQVSNLYLYDSV 304 (400)
T ss_pred EEec----CCcccccHHHHhcccccceeeEEEecCCcHHHHHHHHHHHHHHHhhhccccc---ccccccchhHHHHHHHH
Confidence 9999 8888888888877776 8999999877766555554 666544432211 01114788999999999
Q ss_pred HHHHHHHHHhhc-cCCC-CCCCCC--CCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe-----e
Q psy16206 301 YLFAAALQSLGE-RKPL-PTPLSC--ENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV-----S 371 (821)
Q Consensus 301 ~~~a~Al~~~~~-~~~~-~~~~~c--~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~-----~ 371 (821)
+++|+|+++..+ .... ...++| ....+|..|..|+++|++++|+|+||+|.|++ +|+|.++.|+|+++. +
T Consensus 305 ~~~A~Al~~ll~~~~~~~~~~l~C~~~~~~~w~~G~~ll~~ik~v~f~GLTG~I~F~~-~G~r~~~~ldIi~l~~~~~~g 383 (400)
T cd06392 305 LMLANAFHRKLEDRKWHSMASLNCIRKSTKPWNGGRSMLETIKKGHITGLTGVMEFKE-DGANPHVQFEILGTSYSETFG 383 (400)
T ss_pred HHHHHHHHHHhhccccCCCCCCccCCCCCCCCCChHHHHHHHHhCCCccCccceeECC-CCCCcCCceEEEeccccccCC
Confidence 999999998543 3334 777999 55789999999999999999999999999999 999999999999954 5
Q ss_pred cceEEEEEEecCCCcc
Q psy16206 372 DQWKVLGTWNTAFGLN 387 (821)
Q Consensus 372 ~~~~~vG~w~~~~gl~ 387 (821)
.+.++||+|++.+|++
T Consensus 384 ~g~~~iG~W~~~~gl~ 399 (400)
T cd06392 384 KDVRRLATWDSEKGLN 399 (400)
T ss_pred CCceEeEEecCCCCCC
Confidence 6699999999999985
No 6
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=100.00 E-value=3.7e-49 Score=433.54 Aligned_cols=370 Identities=30% Similarity=0.556 Sum_probs=319.8
Q ss_pred CcEEEEeC-CCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCC
Q psy16206 1 MKIVGIFG-PNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~-~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~ 73 (821)
|+||++++ ++| ...++|+++|+++||++++ ++++..|.+.+++++++|+..+++.+|+++.+||.|||||.|
T Consensus 3 i~IG~i~~~~tg~~~~~g~~~~~a~~~Av~~IN~~~~-il~~~~l~~~~~~~~~~d~~~~~~~~~~~l~~~V~AiiGp~~ 81 (384)
T cd06393 3 IRIGGIFEYLDGPNNQVMSAEELAFRFSANIINRNRT-LLPNTTLTYDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQ 81 (384)
T ss_pred eeEEEeecCCcccccccCcHHHHHHHHHHHHhcCCCc-cCCCceEEEEEEecccccchhHHHHhhcccccCcEEEECCCC
Confidence 68999999 665 5689999999999999999 889999999999988778888999999998789999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVL 153 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~ 153 (821)
|..+.+++++|+.++||+|++++++...+ ....|++|+.|++..++.++++++++++|++|++||+++++...++++.
T Consensus 82 S~~~~av~~i~~~~~iP~Is~~~t~~~lt--~~~~~~~~~~~~~~~~~~a~~~~~~~~~wk~vaily~~~~g~~~l~~~~ 159 (384)
T cd06393 82 GSCTNAVQSICNALEVPHIQLRWKHHPLD--NKDTFYVNLYPDYASLSHAILDLVQYLKWRSATVVYDDSTGLIRLQELI 159 (384)
T ss_pred hHHHHHHHHHHhccCCCeEeccCCCcccC--ccceeEEEeccCHHHHHHHHHHHHHHcCCcEEEEEEeCchhHHHHHHHH
Confidence 99999999999999999999976644323 2346788898998889999999999999999999999887777777777
Q ss_pred HhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccccc
Q psy16206 154 ENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYW 233 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~ 233 (821)
+... ..|+++....++++..||+++|++||+.++++||+.+...++..+++||+++||+.+.|+|++++
T Consensus 160 ~~~~-------~~g~~v~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~~~~~~~~---- 228 (384)
T cd06393 160 MAPS-------RYNIRLKIRQLPTDSDDARPLLKEMKRGREFRIIFDCSHQMAAQILKQAMAMGMMTEYYHFIFTT---- 228 (384)
T ss_pred Hhhh-------ccCceEEEEECCCCchHHHHHHHHHhhcCceEEEEECCHHHHHHHHHHHHHhccccCceEEEEcc----
Confidence 7665 55778877778777889999999999999999999999999999999999999999999999998
Q ss_pred ccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhh-hhcccccccccc--cccchhHHHHHHHHHHHHHHHHHh
Q psy16206 234 INAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYE-ENERGRSLNVRA--ETVKIEAALMYDAVYLFAAALQSL 310 (821)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~--~~~~~~a~~~YDAv~~~a~Al~~~ 310 (821)
.+....+.+++.....++++++....+++.+++|.++|+++ ++.. +.+..+. ..+..+++++||||+++++|++++
T Consensus 229 ~~~~~~~~~~~~~~~~~it~~~~~~~~~~~~~~f~~~~~~~~~~~~-p~~~~~~~~~~~~~~aal~yDav~~~a~A~~~~ 307 (384)
T cd06393 229 LDLYALDLEPYRYSGVNLTGFRILNVDNPHVSSIVEKWSMERLQAA-PKPETGLLDGVMMTDAALLYDAVHMVSVCYQRA 307 (384)
T ss_pred CccccccchhhhcCcceEEEEEecCCCcHHHHHHHHHHHhhhhccc-cccccccccccccchhHHhhhhHHHHHHHHhhh
Confidence 77766776666556678899999999999999999999865 4332 2222111 124678999999999999999976
Q ss_pred hccCCC-CCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCcce
Q psy16206 311 GERKPL-PTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNH 388 (821)
Q Consensus 311 ~~~~~~-~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~~ 388 (821)
. +. ...++|.+..+|..|..|+++|++++|+|+||++.||+.+|.|.++.++|+++.++++++||+|+++.||++
T Consensus 308 ~---~~~~~~~~c~~~~~w~~G~~i~~~l~~~~~~GltG~i~Fd~~~g~r~~~~~~i~~~~~~g~~~vg~W~~~~g~~~ 383 (384)
T cd06393 308 P---QMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWNPNTGLNI 383 (384)
T ss_pred h---hcCCCCCCCCCCCCCcccHHHHHHHhheeecccccceEecCCCCeeeeeEEEEEEecCCcceeeEEEcCCCCcCC
Confidence 5 34 577899999999999999999999999999999999852578999999999999999999999999999864
No 7
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=100.00 E-value=2.4e-48 Score=419.09 Aligned_cols=356 Identities=26% Similarity=0.465 Sum_probs=310.2
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIE 81 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~ 81 (821)
+||+||+.+..+.+.||++|++.+|... +|...+...+..|++++.+++|+|+++||.|||||.++..+..|+
T Consensus 1 ~iG~if~~~~~~~~~af~~av~~~N~~~-------~l~~~~~~~~~~dsf~~~~~~C~~~~~gV~AI~Gp~s~~~a~~v~ 73 (364)
T cd06390 1 QIGGLFPNQQSQEHAAFRFALSQLTEPP-------KLLPQIDIVNISDSFEMTYTFCSQFSKGVYAIFGFYDRKTVNMLT 73 (364)
T ss_pred CCceeeCCCChHHHHHHHHHHHHhccCc-------ccccceEEeccccHHHHHHHHHHHhhcCceEEEccCChhHHHHHH
Confidence 6999999988888999999999999874 455556666778999999999999999999999999999999999
Q ss_pred HHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCC
Q psy16206 82 SMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDK 161 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~ 161 (821)
++|+.++||+|++++ |. ....+|++++.|+ +++|+++++++|+|++|++||+++.+...++.+++...
T Consensus 74 sic~~~~vP~i~~~~-~~----~~~~~~~i~~~P~---~~~Ai~diI~~~~W~~v~iIYd~d~g~~~lq~l~~~~~---- 141 (364)
T cd06390 74 SFCGALHVCFITPSF-PV----DTSNQFVLQLRPE---LQDALISVIEHYKWQKFVYIYDADRGLSVLQKVLDTAA---- 141 (364)
T ss_pred HhhcCCCCCceecCC-CC----CCCCceEEEeChh---HHHHHHHHHHHcCCcEEEEEEeCCccHHHHHHHHHhhh----
Confidence 999999999999855 32 2345779999998 79999999999999999999998888999999999887
Q ss_pred cCCCCCCeEEEEE-cCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccccC
Q psy16206 162 EIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVD 240 (821)
Q Consensus 162 ~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~ 240 (821)
..+++|.... ++.+..+++++|++|++.++++||++|..+.+..+|+++.+.++++.+|+||+++ ++....+
T Consensus 142 ---~~~~~I~~~~~~~~~~~d~~~~L~~ik~~~~rvIVl~~~~~~~~~~L~~a~~~~~~~~gy~wI~t~----l~~~~~~ 214 (364)
T cd06390 142 ---EKNWQVTAVNILTTTEEGYRKLFQDLDKKKERLIVVDCESERLNAILNQIIKLEKNGIGYHYILAN----LGFMDID 214 (364)
T ss_pred ---ccCceeeEEEeecCChHHHHHHHHhccccCCeEEEEECCHHHHHHHHHHHHHhhccCCceEEEecC----CCccccc
Confidence 6677776543 4444668999999999999999999999999999999999999999999999999 7777777
Q ss_pred cccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCCCC---
Q psy16206 241 FQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKPLP--- 317 (821)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~--- 317 (821)
++.+.+...|++|++++.++++.+++|.++|+++.... .+..+...++.+++++||||+++|+|++++..+..-.
T Consensus 215 ~~~~~~~~~nitg~r~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~l~yDaV~~~A~A~~~l~~~~~~~~~~ 292 (364)
T cd06390 215 LTKFRESGANVTGFQLVNYTDTTVSRIMQQWKNFDARD--LPRVDWKRPKYTSALTYDGVRVMAEAFQNLRKQRIDISRR 292 (364)
T ss_pred HHHHhcCCcCceEEEEecCCCHHHHHHHHHHHhhcccc--CCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHcCCCcccC
Confidence 78888888999999999999999999999998765443 2333444678899999999999999999986432212
Q ss_pred -CCCCCCC--CCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCc
Q psy16206 318 -TPLSCEN--PSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGL 386 (821)
Q Consensus 318 -~~~~c~~--~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl 386 (821)
....|.. ..+|..|..|+++|++++|+|+||++.|++ +|+|.++.|+|+++.+.++++||+|+++.|+
T Consensus 293 ~~~~~C~~~~~~~w~~G~~l~~~i~~~~f~GlTG~i~F~~-~G~r~~~~~~I~~~~~~g~~~vG~W~~~~g~ 363 (364)
T cd06390 293 GNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNE-KGRRTNYTLHVIEMKHDGIRKIGYWNEDEKL 363 (364)
T ss_pred CCCCCCCCCCCCCCccHHHHHHHHHhhcccccccceeeCC-CCCcccceEEEEEecCCcceEEEEECCCCCc
Confidence 2348865 457999999999999999999999999999 9999999999999999999999999999987
No 8
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=100.00 E-value=2.3e-47 Score=413.64 Aligned_cols=363 Identities=23% Similarity=0.428 Sum_probs=309.0
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIE 81 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~ 81 (821)
+||+||+.+..+.+.|+++|++.+|.+......+.+|..++...+..|++.+.+++|+|+++||.|||||.+|..+.+++
T Consensus 1 ~iG~if~~~~~~~~~af~~a~~~~n~~~~~~~~~~~l~~~~~~~~~~dsf~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~ 80 (371)
T cd06388 1 QIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLT 80 (371)
T ss_pred CCceeecCCchHHHHHHHHHHHHhhccccccccceEEeeeeeecCCCChhHHHHHHHHHHhCCceEEEecCCHHHHHHHH
Confidence 69999998877889999999999998764122347899999998989999999999999999999999999999999999
Q ss_pred HHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCC
Q psy16206 82 SMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDK 161 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~ 161 (821)
++|+.++||+|+++++. ...+.|.+++.|+ +..++++++++++|++|+++|+++++...++.+++...
T Consensus 81 ~i~~~~~IP~I~~~~~~-----~~~~~f~i~~~p~---~~~a~~~~i~~~~wk~vaiiYd~~~~~~~lq~l~~~~~---- 148 (371)
T cd06388 81 SFCSALHISLITPSFPT-----EGESQFVLQLRPS---LRGALLSLLDHYEWNRFVFLYDTDRGYSILQAIMEKAG---- 148 (371)
T ss_pred HHhhCCCCCeeecCccc-----cCCCceEEEeChh---hhhHHHHHHHhcCceEEEEEecCCccHHHHHHHHHhhH----
Confidence 99999999999986541 2345666677777 46888889999999999999987887888888888886
Q ss_pred cCCCCCCeEEEEE-cCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccccC
Q psy16206 162 EIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVD 240 (821)
Q Consensus 162 ~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~ 240 (821)
..|+.|.... .+.+..||+++|++|++.++++||++|+++.+..+++||+++||+.++|||++++ .+....+
T Consensus 149 ---~~g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~----~~~~~~~ 221 (371)
T cd06388 149 ---QNGWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIAN----LGFKDIS 221 (371)
T ss_pred ---hcCCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECCHHHHHHHHHHHHhcCccccceEEEEcc----Ccccccc
Confidence 6677776443 2233569999999999999999999999999999999999999999999999998 6666666
Q ss_pred cccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCCCC---
Q psy16206 241 FQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKPLP--- 317 (821)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~--- 317 (821)
+.++..+..+++|+++.+++++..++|.++|++++...++. .+ ..+...++++||||++++.|++++..+....
T Consensus 222 l~~~~~g~~nitg~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~-~~~~~~aAl~YDaV~l~a~A~~~l~~~~~~~~~~ 298 (371)
T cd06388 222 LERFMHGGANVTGFQLVDFNTPMVTKLMQRWKKLDQREYPG--SE-SPPKYTSALTYDGVLVMAEAFRNLRRQKIDISRR 298 (371)
T ss_pred HHHHhccCCceEEEEeecCCChhHHHHHHHHHhcCccccCC--CC-CCccchHHHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 66666677889999999888899999999998876544221 11 2477899999999999999999986432212
Q ss_pred -CCCCCCC--CCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCcc
Q psy16206 318 -TPLSCEN--PSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLN 387 (821)
Q Consensus 318 -~~~~c~~--~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~ 387 (821)
.++.|.. ..+|..|..|+++|++++|+|+||++.||+ +|+|.++.++|+++..+++++||+|++..||+
T Consensus 299 ~~~~~C~~~~~~~w~~G~~i~~~lk~~~~~GlTG~i~Fd~-~G~r~~~~l~Ii~l~~~g~~kvG~W~~~~g~~ 370 (371)
T cd06388 299 GNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNIQFDH-YGRRVNYTMDVFELKSNGPRKIGYWNDMDKLV 370 (371)
T ss_pred CCCCCcCCCCCCCCcccHHHHHHHHhcCcCCCccceeECC-CCCcccceEEEEEccCCCceEEEEEcCCCCcc
Confidence 3458954 568999999999999999999999999999 99999999999999999999999999999986
No 9
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=100.00 E-value=4.4e-47 Score=412.58 Aligned_cols=358 Identities=23% Similarity=0.455 Sum_probs=308.7
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIE 81 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~ 81 (821)
+||+||+...++.+.||+.|++.+|.. +.+|...+...+..|++.+.+++|+|+++||.|||||.+|..+.+++
T Consensus 1 ~ig~if~~~~~~~~~af~~a~~~~n~~------~~~l~~~~~~~~~~dsf~~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~ 74 (370)
T cd06389 1 QIGGLFPRGADQEYSAFRVGMVQFSTS------EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTIT 74 (370)
T ss_pred CCceeecCCchHHHHHHHHHHHHhccc------CceeeeeeEEecccchHHHHHHHHHHhhcCcEEEEecCCHHHHHHHH
Confidence 699999988888899999999999986 25899888888889999999999999999999999999999999999
Q ss_pred HHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCC
Q psy16206 82 SMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDK 161 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~ 161 (821)
++|+.++||+|+++++. ...+.|.+++.|+ .+.++++++++++|++|+++|+++.+...++++++...
T Consensus 75 ~i~~~~~IP~I~~~~~~-----~~~~~f~~~~~p~---~~~ai~d~i~~~~wk~vailYdsd~gl~~lq~l~~~~~---- 142 (370)
T cd06389 75 SFCGTLHVSFITPSFPT-----DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAA---- 142 (370)
T ss_pred HhhccCCCCeeeecCCC-----CCCCceEEEecch---hhhHHHHHHHhcCCcEEEEEecCchHHHHHHHHHHhhc----
Confidence 99999999999986541 2357888999998 57999999999999999999997778888999888887
Q ss_pred cCCCCCCeEEEEE-----cCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccc
Q psy16206 162 EIRPGRPSVTIRQ-----LPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINA 236 (821)
Q Consensus 162 ~~~~~g~~v~~~~-----~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~ 236 (821)
..|..|.... ++....||+++|++||+.++++||+.|+.+++..+++||.++||+.++|||++++ .+.
T Consensus 143 ---~~g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~~~~~~Iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~----~~~ 215 (370)
T cd06389 143 ---EKKWQVTAINVGNINNDRKDEAYRSLFQDLENKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIAN----LGF 215 (370)
T ss_pred ---cCCceEEEEEeecCCCccchHHHHHHHHHhccccceEEEEECCHHHHHHHHHHHHHhCccccceEEEEcc----CCc
Confidence 6676665322 2333569999999999999999999999999999999999999999999999988 666
Q ss_pred cccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCC-
Q psy16206 237 HTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKP- 315 (821)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~- 315 (821)
...++..+.....++++++...++++..++|.++|++.....+ +..+...+...++++||||++++.|++++.....
T Consensus 216 ~~~~l~~~~~~~~nitg~~~~~~~~~~v~~f~~~~~~~~~~~~--~~~~~~~~~~~aAl~yDAV~v~a~A~~~l~~~~~~ 293 (370)
T cd06389 216 TDGDLSKIQFGGANVSGFQIVDYDDPLVSKFIQRWSTLEEKEY--PGAHTKTIKYTSALTYDAVQVMTEAFRNLRKQRIE 293 (370)
T ss_pred cccchhhhccCCcceEEEEEecCCCchHHHHHHHHHhcCcccc--CCCCCcCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6666666666677899999988889999999999987432221 2223345788999999999999999999864321
Q ss_pred C---CCCCCCCC--CCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCcc
Q psy16206 316 L---PTPLSCEN--PSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLN 387 (821)
Q Consensus 316 ~---~~~~~c~~--~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~ 387 (821)
. .++.+|.+ ..+|.+|..|+++|++++|+|+||++.||+ +|+|.++.++|++++.+++++||.|++..|++
T Consensus 294 ~~~~~~~~~C~~~~~~~w~~G~~i~~~l~~~~~~GlTG~i~Fd~-~G~r~~~~~~ii~l~~~g~~kvG~W~~~~~~~ 369 (370)
T cd06389 294 ISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLTGNIKFDQ-NGKRINYTINVMELKSNGPRKIGYWSEVDKMV 369 (370)
T ss_pred cccCCCCCCcCCCCCCCCCCcHHHHHHHHhcccCccccceEeCC-CCccccceEEEEEecCCcceEEEEEcCCCCcc
Confidence 1 35669965 568999999999999999999999999999 99999999999999999999999999999985
No 10
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=100.00 E-value=8.7e-47 Score=415.85 Aligned_cols=365 Identities=25% Similarity=0.466 Sum_probs=309.9
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIE 81 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~ 81 (821)
+||+||+.+++..+.|+++|++++|++.. ++++++|.+.+.+++++|+.++++++|+|+++||.|||||.||..+.+++
T Consensus 1 ~iG~if~~~~~~~~~a~~~Av~~iN~~~~-~~~~~~l~~~~~~~~~~d~~~~~~~~c~ll~~~V~aiiGp~~s~~~~~~~ 79 (382)
T cd06380 1 PIGGLFDVDEDQEYSAFRFAISQHNTNPN-STAPFKLLPHVDNLDTSDSFALTNAICSQLSRGVFAIFGSYDKSSVNTLT 79 (382)
T ss_pred CceeEECCCChHHHHHHHHHHHHhccccc-ccCCeeeeeeeeEecccchHHHHHHHHHHHhcCcEEEEecCcHHHHHHHH
Confidence 69999999999999999999999998865 56888999999998888999999999999998999999999999999999
Q ss_pred HHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCC
Q psy16206 82 SMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDK 161 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~ 161 (821)
++|+.++||+|+++++...+ ...++|+||+.|+. ..++++++++++|++|+++|+++++...++++++...
T Consensus 80 ~~~~~~~iP~i~~~~~~~~l--~~~~~~~fr~~p~~---~~a~~~~~~~~~wk~vaii~~~~~~~~~~~~~~~~~~---- 150 (382)
T cd06380 80 SYSDALHVPFITPSFPTNDL--DDGNQFVLQMRPSL---IQALVDLIEHYGWRKVVYLYDSDRGLLRLQQLLDYLR---- 150 (382)
T ss_pred HHHhcCCCCeEecCCCcccC--CCCCcEEEEeccch---hHHHHHHHHhcCCeEEEEEECCCcchHHHHHHHHHHh----
Confidence 99999999999997764432 45788999999974 4689999999999999999998888778888887775
Q ss_pred cCCCCC--CeEEEEEcCC--CCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccccccccc
Q psy16206 162 EIRPGR--PSVTIRQLPP--DTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAH 237 (821)
Q Consensus 162 ~~~~~g--~~v~~~~~~~--~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~ 237 (821)
..| +.+....+.. +..||+++|++||+.++|+||+.|..+++..+++||+++||..++|+|++++ .+..
T Consensus 151 ---~~g~~i~v~~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~i~~qa~~~gm~~~~y~~i~~~----~~~~ 223 (382)
T cd06380 151 ---EKDNKWQVTARRVDNVTDEEEFLRLLEDLDRRKEKRIVLDCESERLNKILEQIVDVGKNRKGYHYILAN----LGFD 223 (382)
T ss_pred ---ccCCceEEEEEEecCCCcHHHHHHHHHHhhcccceEEEEECCHHHHHHHHHHHHHhhhcccceEEEEcc----CCcc
Confidence 445 5565554443 2458999999999999999999999999999999999999999999999988 5544
Q ss_pred ccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccC---
Q psy16206 238 TVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERK--- 314 (821)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~--- 314 (821)
..++..+.....++++++...++++..++|.++|+++++... +..+...+..+++++||||++++.|++++++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~~~aa~aYDav~~~a~Al~~~~~~~~~~ 301 (382)
T cd06380 224 DIDLSKFLFGGVNITGFQLVDNTNPTVQKFLQRWKKLDPREW--PGAGTSPIKYTAALAHDAVLVMAEAFRSLRRQRGSG 301 (382)
T ss_pred cccHHHhccCceeeEEEeccCCCCHHHHHHHHHHHhcCcccc--CcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444444444556788888777778899999999998875332 222333567899999999999999999997532
Q ss_pred ------CC-CCCCCCCC--CCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCC
Q psy16206 315 ------PL-PTPLSCEN--PSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFG 385 (821)
Q Consensus 315 ------~~-~~~~~c~~--~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g 385 (821)
.. .+++.|.. ..+|.+|..++++|++++|+|+||++.||+ +|+|.+..++|++++++++++||.|++..|
T Consensus 302 ~~~~~~~~~~~~~~C~~~~~~~~~~g~~i~~~l~~~~~~G~tG~i~Fd~-~G~~~~~~~~i~~~~~~~~~~vg~w~~~~g 380 (382)
T cd06380 302 RHRIDISRRGNGGDCLANPAVPWEHGIDIERALKKVQFEGLTGNVQFDE-FGQRTNYTLDVVELKTRGLRKVGYWNEDDG 380 (382)
T ss_pred ccccccccCCCCCcCCCCCCCCccchHHHHHHHHhcccCCcccceEECC-CCCcccccEEEEEecCCCceEEEEECCCcC
Confidence 12 56778975 457999999999999999999999999999 999999999999999999999999999988
Q ss_pred c
Q psy16206 386 L 386 (821)
Q Consensus 386 l 386 (821)
+
T Consensus 381 ~ 381 (382)
T cd06380 381 L 381 (382)
T ss_pred c
Confidence 7
No 11
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=100.00 E-value=1.8e-45 Score=400.96 Aligned_cols=368 Identities=18% Similarity=0.288 Sum_probs=296.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEE--EEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEP--IVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNI 79 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~--~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~ 79 (821)
+||+||+.+....+.|+++|++++|++.. ++++++|++ ...|+ +|+..+.+++|+|+++||.|||||.++..+..
T Consensus 1 ~IGaif~~~s~~~~~Af~~Ai~~iN~~~~-~l~~~~l~~~~~~~d~--~d~f~a~~~~c~l~~~gv~ai~Gp~~~~~~~~ 77 (400)
T cd06391 1 HIGAIFDESAKKDDEVFRMAVADLNQNNE-ILQTEKITVSVTFVDG--NNPFQAVQEACELMNQGILALVSSIGCTSAGS 77 (400)
T ss_pred CcceeeccCCchHHHHHHHHHHHhcCCcc-ccCCCcceEEEEEeeC--CCcHHHHHHHHHHHhCCeEEEECCCcchHHHH
Confidence 59999999997888999999999999987 889996666 66663 59999999999999889999999988888899
Q ss_pred HHHHhccCCCceeee----ccCC-----CCCCC-CCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHH
Q psy16206 80 IESMCQMFDIPHVEA----FWDP-----NKYFI-PTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYL 149 (821)
Q Consensus 80 v~~i~~~~~iP~is~----~~~~-----~~~~~-~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~ 149 (821)
++++|+.++||+|++ ++++ ...++ ...+++++| |+ ..+++|+++++++|+|++|+++++++.+...+
T Consensus 78 v~~~~~~~~vP~i~~~~~~~~t~~~~~~~~~~~~~~~y~~~~r--p~-~~~~~ai~~li~~f~W~~v~i~~d~~~~~~~l 154 (400)
T cd06391 78 LQSLADAMHIPHLFIQRSTAGTPRSSCGLTRSNRNDDYTLSVR--PP-VYLNDVILRVVTEYAWQKFIIFYDTDYDIRGI 154 (400)
T ss_pred HHHHhccCcCCeEEeecccccCccccCCCCCCCCcccceEEec--Ch-HHHHHHHHHHHHHcCCcEEEEEEeCCccHHHH
Confidence 999999999999985 3322 11111 334554555 75 67889999999999999999999888888899
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEEcCCC-C----CChHH-HHHHhhc--CCCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQLPPD-T----DDYRP-LLKEIKN--SSESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~-~----~d~~~-~l~~lk~--~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++... ..+++|....+... . ..++. .+++|++ ++.++||++|..+.+..+|++|.++||++.
T Consensus 155 ~~l~~~~~-------~~~i~I~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~rviVl~~~~~~~~~ll~~a~~~gm~~~ 227 (400)
T cd06391 155 QEFLDKVS-------QQGMDVALQKVENNINKMITGLFRTMRIEELNRYRDTLRRAILVMNPATAKSFITEVVETNLVAF 227 (400)
T ss_pred HHHHHHHH-------HcCCeEEEEecCcchhhhhHHHHHHHHHHHHHhhcccccEEEEECCcHHHHHHHHHHHHcCCCCC
Confidence 99998887 77889887654332 1 12332 4566765 677999999999999999999999999999
Q ss_pred ceEEEEecccccccccccCcccccCCc-eeeEEEEeecCCChhHHHhhhhhhhhhhccccccccc-ccccchhHHHHHHH
Q psy16206 222 YQNYILSLTSYWINAHTVDFQDFQPGY-ANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVR-AETVKIEAALMYDA 299 (821)
Q Consensus 222 ~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~YDA 299 (821)
+|+||+++ ++....+++++.... .++++++.+.+.+....+|..+|+.++....+.+... ...++.+++++|||
T Consensus 228 ~y~wi~t~----~~~~~~dl~~~~~~~~~~v~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~alayDa 303 (400)
T cd06391 228 DCHWIIIN----EEISDMDVQELVRRSIGRLTIIRQTFPLPQNISQRCFRGNHRISSSLCDPKDPFAQMMEISNLYIYDT 303 (400)
T ss_pred CeEEEEeC----ccccccccchHHhcccceEEEeccCCchHHHHHHHHHHHhhhccccccCccccccccccchhhHHHHH
Confidence 99999999 777777666543332 4677777766666778888888887653221122211 12467899999999
Q ss_pred HHHHHHHHHHhhcc-CCC-CCCCCCCC--CCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe-----
Q psy16206 300 VYLFAAALQSLGER-KPL-PTPLSCEN--PSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV----- 370 (821)
Q Consensus 300 v~~~a~Al~~~~~~-~~~-~~~~~c~~--~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~----- 370 (821)
|+++|+|++++... ... ...++|.. ..+|..|..|+++|++++|+|+||++.|++ +|+|.++.|+|+++.
T Consensus 304 V~~~A~A~~~l~~~~~~~~~~~~~c~~~~~~~w~~G~~ll~~i~~~~f~GlTG~i~f~~-~g~r~~~~~dIin~~~~~~~ 382 (400)
T cd06391 304 VLLLANAFHKKLEDRKWHSMASLSCIRKNSKPWQGGRSMLETIKKGGVSGLTGELEFNE-NGGNPNVHFEILGTNYGEDL 382 (400)
T ss_pred HHHHHHHHHHHHhhccccCCCCcccccCCCCCCCChHHHHHHHHhcCcccceeceEECC-CCCccCCceEEEEeeccccC
Confidence 99999999987532 234 77889975 558999999999999999999999999998 899999999999996
Q ss_pred ecceEEEEEEecCCCcc
Q psy16206 371 SDQWKVLGTWNTAFGLN 387 (821)
Q Consensus 371 ~~~~~~vG~w~~~~gl~ 387 (821)
+.+.++||+|++..||+
T Consensus 383 ~~g~rkiG~Ws~~~gl~ 399 (400)
T cd06391 383 GRGVRKLGCWNPITGLN 399 (400)
T ss_pred CCcceEEEEEcCCcCCC
Confidence 88899999999999975
No 12
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=100.00 E-value=2.2e-44 Score=380.96 Aligned_cols=325 Identities=23% Similarity=0.399 Sum_probs=280.0
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcch-H
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIEN-R 77 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~-~ 77 (821)
+||+||+.+. +..+.|+++|++++|++++ ++++.+|+++++|....+.+.++.++|+++++||.|||||.+|.. +
T Consensus 1 ~iG~i~d~~s~~G~~~~~a~~lAv~~iN~~~~-~~~~~~l~~~~~d~~~d~~f~~~~~~~~~l~~gV~AIiGp~ss~~~~ 79 (333)
T cd06394 1 RIAAILDDPMECGRGERLALALARERINRAPE-RLGKARVEVDIFELLRDSQYETTDTMCQILPKGVVSVLGPSSSPASS 79 (333)
T ss_pred CceeeecCCccccHHHHHHHHHHHHHhccCcc-ccCCceeEEEEeeccccChHHHHHHHHHHHhcCeEEEECCCCchHHH
Confidence 6999999976 8899999999999999988 677789999999976555568999999999889999999999965 6
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCcc-EEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhc
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVH-GVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENA 156 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~-~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~ 156 (821)
.+++++|+..+||+|+++.+... . .....+ .+++.|++..+++|+++++.+|+|++|++||++++++..++++++..
T Consensus 80 ~~v~~i~~~~~VP~Is~~~~~~~-~-~~~~~~~~i~l~P~~~~~~~Ai~dli~~~~W~~v~~iYe~d~~l~~L~~~l~~~ 157 (333)
T cd06394 80 SIVSHICGEKEIPHFKVGPEETP-K-LQYLRFASVNLHPSNEDISVAVAGILNSFNYPTASLICAKAECLLRLEELLRQF 157 (333)
T ss_pred HHHHHHhhccCCceEEeccccCc-c-cccccceEEEecCCHHHHHHHHHHHHHhcCCCEEEEEEeCcHHHHHHHHHHHhh
Confidence 79999999999999998644211 0 111233 58999999999999999999999999999999999999999999987
Q ss_pred CCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccc
Q psy16206 157 HDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINA 236 (821)
Q Consensus 157 ~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~ 236 (821)
. ..+..+.....+ +..||+++|++|++.++++||++|..+.+..+++||+++||+.++|+|++++ ++.
T Consensus 158 ~-------~~~~~i~~~~~~-~~~d~~~~L~~ik~~~~~~iVv~~~~~~a~~il~qa~~lGm~~~~y~~i~T~----l~~ 225 (333)
T cd06394 158 L-------ISKETLSVRMLD-DSRDPTPLLKEIRDDKTATIIIDANASMSHTILLKASELGMTSAFYKYILTT----MDF 225 (333)
T ss_pred c-------ccCCceeeEEcc-CcccHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHHHcCCCCCceEEEEec----CCc
Confidence 6 555666655544 3679999999999999999999999999999999999999999999999999 888
Q ss_pred cccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcc---cccccccccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy16206 237 HTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENER---GRSLNVRAETVKIEAALMYDAVYLFAAALQSLGER 313 (821)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~ 313 (821)
...++.++.....+++++++.+++++..++|.++|++++.+. .+.++ ....++++||||+++
T Consensus 226 ~~~~L~~~~~~~~niTgF~l~d~~~~~v~~f~~~~~~~~~~~~~~~~~~~-----~~~~~al~~D~v~~~---------- 290 (333)
T cd06394 226 PLLRLDSIVDDRSNILGFSMFNQSHAFYQEFIRSLNQSWRENCDHSPYTG-----PALSSALLFDAVYAV---------- 290 (333)
T ss_pred ccccHHHhhcCCcceEEEEeecCCcHHHHHHHHHHHHhhhhhcccccCCC-----cccceeeecceEEEE----------
Confidence 777888887778999999999999999999999998866321 11111 124678888888764
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCcce
Q psy16206 314 KPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNH 388 (821)
Q Consensus 314 ~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~~ 388 (821)
|+||+|.||+ .|+|.++.++|++++.++.++||.|++..||++
T Consensus 291 -------------------------------glTg~i~f~~-~g~R~~~~l~v~~l~~~g~~kig~W~~~~gl~~ 333 (333)
T cd06394 291 -------------------------------GLTGRIEFNS-KGQRSNYTLKILQKTRSGFRQIGQWHSNETLSM 333 (333)
T ss_pred -------------------------------eeecceecCC-CCcCcccEEEEEEecCCcceEEEEEeCCCCcCC
Confidence 8999999999 999999999999999999999999999999863
No 13
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=100.00 E-value=6e-43 Score=377.15 Aligned_cols=325 Identities=38% Similarity=0.711 Sum_probs=285.2
Q ss_pred cEEEEeC-CCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHH
Q psy16206 2 KIVGIFG-PNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNII 80 (821)
Q Consensus 2 ~IG~i~~-~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v 80 (821)
|||++|+ ..|...++|+++|+++||++++ +++|++|+++++|++.+++..+++++|+|+.++|.+||||.+|..+.++
T Consensus 1 ~iG~i~~~~~g~~~~~a~~lAv~~iN~~gg-il~g~~l~~~~~d~~~~~~~~a~~~~~~li~~~V~aiiG~~~S~~~~av 79 (327)
T cd06382 1 RIGAIFDDDDDSGEELAFRYAIDRINREKE-LLANTTLEYDIKRVKPDDSFETTKKVCDLLQQGVAAIFGPSSSEASSIV 79 (327)
T ss_pred CeEEEecCCCchHHHHHHHHHHHHhccccc-ccCCceEEEEEEEecCCCcHHHHHHhhhhhhcCcEEEECCCChhHHHHH
Confidence 7999999 7778999999999999999999 8889999999999555899999999999998899999999999999999
Q ss_pred HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCC
Q psy16206 81 ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDD 160 (821)
Q Consensus 81 ~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~ 160 (821)
+++++.++||+|++++++...+ .++|+||+.|++..+++++++++++++|++|+++++++++...+++++++.+
T Consensus 80 ~~~~~~~~vP~Is~~~~~~~~~---~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vavl~~~~~~~~~l~~~~~~~~--- 153 (327)
T cd06382 80 QSICDAKEIPHIQTRWDPEPKS---NRQFTINLYPSNADLSRAYADIVKSFNWKSFTIIYESAEGLLRLQELLQAFG--- 153 (327)
T ss_pred HHHHhccCCCceeccCCcCccc---cccceEEeCCCHHHHHHHHHHHHHhcCCcEEEEEecChHHHHHHHHHHHhhc---
Confidence 9999999999999876644322 5678999999999999999999999999999999999988888888888776
Q ss_pred CcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccccC
Q psy16206 161 KEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVD 240 (821)
Q Consensus 161 ~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~ 240 (821)
..|..+....++++. ||+++|++|++.++|+|++.|.+.++..+++||+++||..+.|+|++++ .+....+
T Consensus 154 ----~~g~~v~~~~~~~~~-d~~~~l~~i~~~~~d~vv~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~----~~~~~~~ 224 (327)
T cd06382 154 ----ISGITITVRQLDDDL-DYRPLLKEIKNSGDNRIIIDCSADILIELLKQAQQVGMMSEYYHYIITN----LDLHTLD 224 (327)
T ss_pred ----cCCCeEEEEEccCCc-cHHHHHHHHHhcCceEEEEECCHHHHHHHHHHHHHhCccccceEEEEec----CCccccc
Confidence 445566667777766 9999999999999999999999999999999999999999999999988 5555545
Q ss_pred cccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q psy16206 241 FQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKPLPTPL 320 (821)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~ 320 (821)
+..+.....++++++...++++.+++|.++|+++++... +..+...|+.+++.+|||++++
T Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~p~~~~a~~yDav~~~----------------- 285 (327)
T cd06382 225 LEDYRYSGVNITGFRLVDPDSPEVKEVIRSLELSWDEGC--RILPSTGVTTESALMYDAVYLF----------------- 285 (327)
T ss_pred hhhhccCceeEEEEEEecCCchhHHHHHHHHHhhccccc--ccCCCCCcchhhhhhhceEEEe-----------------
Confidence 555555567889988888888999999999999986431 1222335778899999998875
Q ss_pred CCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCc
Q psy16206 321 SCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGL 386 (821)
Q Consensus 321 ~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl 386 (821)
|+||.+.||+ +|+|.++.++|+++.++++++||.|+++.|+
T Consensus 286 ------------------------g~tG~v~f~~-~g~r~~~~~~~~~~~~~~~~~vg~w~~~~~~ 326 (327)
T cd06382 286 ------------------------GLTGRIEFDS-SGQRSNFTLDVIELTESGLRKVGTWNSSEGL 326 (327)
T ss_pred ------------------------ecccceeeCC-CCCEeeeEEEEEeccccCceEEEEECCCCCc
Confidence 8999999999 9999999999999999999999999999886
No 14
>KOG1052|consensus
Probab=100.00 E-value=8.3e-41 Score=391.82 Aligned_cols=450 Identities=30% Similarity=0.507 Sum_probs=358.5
Q ss_pred HHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccccCcccc---cCCceeeEEEEeecCCC
Q psy16206 185 LLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVDFQDF---QPGYANITTVRMINPTN 261 (821)
Q Consensus 185 ~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 261 (821)
.+.+++....+++++++.+..+..++.++.++||+..+|+|+.++ ++....+.... .....+..+.+.+.+.+
T Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~i~t~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s 80 (656)
T KOG1052|consen 5 LLLKLKAMRTRVFVLHMFPILALAIFSQAEELGMMQFGYVWILTN----LLTDALDLDELYSLIDVMNGVLGLRGHIPRS 80 (656)
T ss_pred HHHHhhccCceEEEEeCCHHHHHHHHHHHHHhCccccCeEEEEEe----cchhhhcccccccchhheeeEEeeccCCCcc
Confidence 445555678899999999888999999999999999999999999 55554444432 22225666666666777
Q ss_pred hhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCCCCCCCCCchhHHHhhhh
Q psy16206 262 PHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKPL-PTPLSCENPSSWQHGLGIGNLMKS 340 (821)
Q Consensus 262 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~-~~~~~c~~~~~~~~g~~l~~~l~~ 340 (821)
...+.|..+++.. ......++.++||++++++.|++.... . .....|.+.+.|.++..+.+.++.
T Consensus 81 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~D~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (656)
T KOG1052|consen 81 ELLQNFVTRWQTS-----------NVELLVYALWAYDAIQALARAVESLLN---IGNLSLSCGRNNSWLDALGVFNFGKK 146 (656)
T ss_pred HHHHHHHHHHhhc-----------cccccchhhHHHHHHHHHHHHHHHhhc---CCCCceecCCCCcccchhHHHHHHHh
Confidence 7778888877654 112467789999999999999999874 4 778888887889999999999988
Q ss_pred ceec---cceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCcceeccccccchhhhhhc--cCceEEEEeecc
Q psy16206 341 ITID---GMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHSRTVEQMDKEKKEKI--ENRTLTVTSKTF 415 (821)
Q Consensus 341 ~~~~---G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~~~~~~~~~~~~~~~~~--~~~~l~v~~~~g 415 (821)
.... |.+|.+.++. ++.+....++++++.+.+...+|.|++..|.++.++............ .+.+++|++.
T Consensus 147 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~n~~~~~~~~ig~W~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~v~~~-- 223 (656)
T KOG1052|consen 147 LLVVNLSGVTGQFQFFR-GGLLEYFKYEILNLNGSGERRIGYWYPRGGENISWPGKDYFVPKGWFFPTNGKPLRVGVV-- 223 (656)
T ss_pred hhhhccccceeEEEecC-CCccccceEEEEEecCcCceeEEEecCCCCceeeccCCcccCcCCccccCCCceEEEEEe--
Confidence 7644 4567888887 788999999999999999999999999998666665532211111111 3555666666
Q ss_pred ceeeeeecCCCceeecCC-----CCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcc
Q psy16206 416 AKLRVLFQGEPYMMKNPE-----TGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRAD 489 (821)
Q Consensus 416 ~~lrVgv~~~P~~~~~~~-----~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~D 489 (821)
..+||...... +...+ |+|+|+++++++.+||+|+++.++++. |..++. |+|++++++|.+|++|
T Consensus 224 -------~~~P~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~~~~~~-g~~~~~-g~~~g~v~~l~~~~ad 294 (656)
T KOG1052|consen 224 -------TEPPFVDLVEDLAILNGNDRIEGFEIDLLQALAKRLNFSYEIIFVPDGS-GSRDPN-GNWDGLVGQLVDGEAD 294 (656)
T ss_pred -------ccCCceeeeecccccCCCCccceEEehHHHHHHHhCCCceEEEEcCCCC-CCCCCC-CChhHHHHHHhcCccc
Confidence 78888873222 33467 999999999999999999999999988 888885 9999999999999999
Q ss_pred eEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCccee
Q psy16206 490 LAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLR 569 (821)
Q Consensus 490 i~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (821)
++ ++++++++|++.+|||.||+..+.+++++++..... .+.++.||+..+|+++++++++++++.|+.+++.+++
T Consensus 295 vg-~~~tit~~R~~~vdfT~p~~~~~~~i~~~~~~~~~~-~~~fl~Pf~~~vW~~i~~~~l~~~~~~~~~~~~~~~~--- 369 (656)
T KOG1052|consen 295 VG-ADITITPERSKYVDFTIPYLQFGIVIIVRKPDSRSK-LWNFLAPFSPEVWLLILASLLLVGLLLWILERLSPYE--- 369 (656)
T ss_pred cc-cceEEeecccccEEeccceEeccEEEEEEecCCccc-ceEEecCCcHHHHHHHHHHHHHHHHHHHHHhcccccc---
Confidence 99 899999999999999999999999999999977555 8999999999999999999999999999999876630
Q ss_pred EeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeecceecCCCcccccC
Q psy16206 570 YSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGGLLDSKGYGIAMP 649 (821)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 649 (821)
+ ..
T Consensus 370 --------------~---~~------------------------------------------------------------ 372 (656)
T KOG1052|consen 370 --------------L---PP------------------------------------------------------------ 372 (656)
T ss_pred --------------C---Cc------------------------------------------------------------
Confidence 0 00
Q ss_pred CchhhcccccceeEEEEeecCCccccccCCCCCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHH
Q psy16206 650 TSKFLAKFSFGFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGEL 729 (821)
Q Consensus 650 k~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 729 (821)
. ......| ...+..|..+.+.+
T Consensus 373 -------------------~---~~~~~~~------------------------------------~~~~~~~~~~~~~~ 394 (656)
T KOG1052|consen 373 -------------------R---QIVTSLF------------------------------------SLLNCLWLTVGSLL 394 (656)
T ss_pred -------------------c---ccceeEe------------------------------------ecccchhhhhHHHh
Confidence 0 0000000 00012355444445
Q ss_pred hhccceeeeehhhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEE
Q psy16206 730 QEQVDTFILFFIYSILFFIYTFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGC 809 (821)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~ 809 (821)
.++.+ ..|++.++|++.++|||+++|++++|||||+|+||++++.+||++++||++|.++.+|.
T Consensus 395 ~q~~~----------------~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~~~~~~i~~~~dL~~~~~~~~g~ 458 (656)
T KOG1052|consen 395 QQGSD----------------EIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVPRLRSPIDSLDDLADQSNIPYGT 458 (656)
T ss_pred ccCCC----------------ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccCHHHHHHhcCCeEEE
Confidence 44433 47999999999999999999999999999999999999999999999999989999999
Q ss_pred EecCccccccc
Q psy16206 810 VEMGSTRNFFK 820 (821)
Q Consensus 810 ~~~~~~~~~~~ 820 (821)
..+++++.||+
T Consensus 459 ~~~~~~~~~~~ 469 (656)
T KOG1052|consen 459 QRGSFTRIYLE 469 (656)
T ss_pred EecchHHHHHH
Confidence 99999999885
No 15
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=100.00 E-value=9.7e-40 Score=352.14 Aligned_cols=336 Identities=17% Similarity=0.229 Sum_probs=267.2
Q ss_pred cEEEEeCCCchHHHHHHHHHHH--HHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVR--RINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNI 79 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~--~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~ 79 (821)
+||+||+.+..+.+.|+.+|+. ++|++++ .++..++++.+| +.+||.++++++|+|+++||.|||||.+|..+.+
T Consensus 1 ~IG~if~~~~~~~~~af~~ala~~~iN~~gg--~~~~~i~~v~~d-d~~d~~~a~~~~c~Li~~gV~AI~G~~~s~~~~a 77 (363)
T cd06381 1 HIGAIFSESALEDDEVFAVAVIDLNINEQIL--QTEKITLSISFI-DLNNHFDAVQEACDLMNQGILALVTSTGCASAIA 77 (363)
T ss_pred CeeeeccCCcchHHHHHHHHHHHhhcccccc--CCccceeeeEee-cCCChHHHHHHHHHHHhcCcEEEEecCChhHHHH
Confidence 6999999987555666666665 5677666 556668888888 7799999999999999999999999999999999
Q ss_pred HHHHhccCCCceeeeccCCCC--------CCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHH
Q psy16206 80 IESMCQMFDIPHVEAFWDPNK--------YFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQ 151 (821)
Q Consensus 80 v~~i~~~~~iP~is~~~~~~~--------~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~ 151 (821)
++++|+..+||+|++.+.... +.++...+|.|+++|+. .++.+++++++++||++|+++|+++++...+++
T Consensus 78 v~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~f~~rp~~-~~~~ai~~lv~~~~wkkvavly~~d~g~~~l~~ 156 (363)
T cd06381 78 LQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYTLALRPPV-RLNDVMLRLVTEWRWQKFVYFYDNDYDIRGLQE 156 (363)
T ss_pred HHHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeEEEEeccH-HHHHHHHHHHHhCCCeEEEEEEECCchHHHHHH
Confidence 999999999999997543211 01123456888888985 688999999999999999999999998888888
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCC-CCChHHHHHHhh-------cCCCcEEEEeCChhHHHHHHHHHHHccccCcce
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPD-TDDYRPLLKEIK-------NSSESHILLDCSMDKTVTILKQAKEVHLMGDYQ 223 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~-~~d~~~~l~~lk-------~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~ 223 (821)
+++... ..|..+.......+ ...++..++.++ ..+.++||++|+++.+..++++|.++||+..+|
T Consensus 157 ~~~~~~-------~~g~~v~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~vIl~~~~~~~~~~l~~a~~~gm~~~~~ 229 (363)
T cd06381 157 FLDQLS-------RQGIDVLLQKVDLNISKMATALFTTMRCEELNRYRDTLRRALLLLSPNGAYTFIDASVETNLAIKDS 229 (363)
T ss_pred HHHHHH-------hcCceEEEEecccccchhhhhhhhHHHHHHHHhhcccceEEEEEcCcHHHHHHHHHHHHcCCCcCce
Confidence 888776 55666665555433 223444444443 345668999999999999999999999999999
Q ss_pred EEEEecccccccccccCcccccCCceeeEEEEeecCCChhHH----HhhhhhhhhhhcccccccccccccchhHHHHHHH
Q psy16206 224 NYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIR----SIMNGWIYEENERGRSLNVRAETVKIEAALMYDA 299 (821)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDA 299 (821)
+|+++++ ++....+++.+.+...|++|+++.++.+...+ +|.+.|..... + .+. +...+.+.++++|||
T Consensus 230 ~wi~~~~---l~~~~~~l~~~~~~~~nitgfrl~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~al~yDa 302 (363)
T cd06381 230 HWFLINE---EISDTEIDELVRYAHGRMTVIRQTFSKEKTNQRCLRNNHRISSLLCD-P--KDG-YLQMLEISNLYIYDS 302 (363)
T ss_pred EEEEecc---ccccchhhHHHhhcCccEEEEEEecCCcCchHHHHHHHHHHHHhhcC-C--CCC-CCCChhHHHHHHHHH
Confidence 9987664 77777788888888999999999987766666 44555543221 1 112 223577889999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecc-----e
Q psy16206 300 VYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQ-----W 374 (821)
Q Consensus 300 v~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~-----~ 374 (821)
|+++ +++|++++|+|+||+|.|++ +|.|.++.++|+++..++ .
T Consensus 303 V~~~-------------------------------~~~~~~~~~~GLTG~i~F~~-~g~r~~~~l~i~~~~~~~~~~~~~ 350 (363)
T cd06381 303 VLLL-------------------------------LETIKKGPITGLTGKLEFNE-GGDNSNVQFEILGTGYSETLGKDG 350 (363)
T ss_pred HHHH-------------------------------HHHHHhcCccCcceeEEeCC-CCCccccEEEEEEeccCCccccce
Confidence 9998 34667778999999999999 999999999999999666 8
Q ss_pred EEEEEEecCCCcc
Q psy16206 375 KVLGTWNTAFGLN 387 (821)
Q Consensus 375 ~~vG~w~~~~gl~ 387 (821)
+.+|.|++..|++
T Consensus 351 ~~~~~w~~~~~~~ 363 (363)
T cd06381 351 RWLATWNPSKGLN 363 (363)
T ss_pred EEeeeccCCCCCC
Confidence 9999999998874
No 16
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=100.00 E-value=8.4e-40 Score=359.17 Aligned_cols=351 Identities=17% Similarity=0.225 Sum_probs=272.7
Q ss_pred EEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 4 VGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 4 G~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
=+++|.++ ...+.|+++|+++||++++ +++|++|+++++|++ |++..+.+++..+..+||.|||||.||..+
T Consensus 3 ~~l~p~~~~~~~~~~~~~~a~~lAie~IN~~~~-ll~g~~l~~~~~d~~-~~~~~~~~~~~~l~~~~v~aiiGp~~s~~~ 80 (387)
T cd06386 3 LVLLPQNNSYLFSSARVAPAIEYAQRRLEANRL-LFPGFRFNVHYEDSD-CGNEALFSLVDRSCARKPDLILGPVCEYAA 80 (387)
T ss_pred EEECCCCCCcceehhhhHHHHHHHHHHHhcCCC-CCCCcEEEEEEeCCc-CCchHHHHHHHHHHhhCCCEEECCCCccHH
Confidence 35566444 6789999999999999998 789999999999954 677777777777776799999999999999
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCC-CCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchh----HHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFI-PTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLV----YLQQV 152 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~-~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~----~~~~~ 152 (821)
.+++++|+.++||+|++++++..+++ ...+||++|+.|++..++.++++++++|+|++|++||+++++.. .++.+
T Consensus 81 ~~va~ia~~~~iP~Is~~a~~~~~s~~~~~yp~~~R~~p~~~~~~~a~~~ll~~~~W~~vaiiy~~~~~~~~~~~~~~~l 160 (387)
T cd06386 81 APVARLASHWNIPMISAGALAAGFSHKKSEYSHLTRVAPSYVKMGETFSALFERFHWRSALLVYEDDKQERNCYFTLEGV 160 (387)
T ss_pred HHHHHHHHhCCCcEEccccCchhhccCcccCCeeEEecCchHHHHHHHHHHHHhCCCeEEEEEEEcCCCCccceehHHHH
Confidence 99999999999999999666444354 45688899999999999999999999999999999998876322 24454
Q ss_pred HHhcCCCCCcCCCCCCeEEEEE-cCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 153 LENAHDDDKEIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
.+... ..|++|.... ++.+..|+.++|+++++.+ |+||+++....+..+++||+++||++.+|+|+..+-.
T Consensus 161 ~~~~~-------~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ll~~A~~~gm~~~~yv~i~~d~~ 232 (387)
T cd06386 161 HHVFQ-------EEGYHMSIYPFDETKDLDLDEIIRAIQASE-RVVIMCAGADTIRSIMLAAHRRGLTSGDYIFFNIELF 232 (387)
T ss_pred HHHHH-------hcCceEEEEecCCCCcccHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEecc
Confidence 44444 4466776554 4444679999999999988 9999999999999999999999999999999998710
Q ss_pred --------ccccccccCcc--cccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHH
Q psy16206 232 --------YWINAHTVDFQ--DFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVY 301 (821)
Q Consensus 232 --------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~ 301 (821)
.|......+.. .......+++++ .+.++.+++|.+++++++...... .....++.+++++|||++
T Consensus 233 ~~~~~~~~~w~~~~~~~~~~~~a~~~~~~v~~~---~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~~~aa~~yDav~ 307 (387)
T cd06386 233 NSSSYGDGSWKRGDKHDFEAKQAYSSLNTVTLL---RTVKPEFEKFSMEVKSSVEKAGDL--NDCDYVNMFVEGFHDAIL 307 (387)
T ss_pred cccccCCCCCccCCCcCHHHHHHHHhheEEecc---CCCChHHHHHHHHHHHHHHhCCCC--cccccchHHHHHHHHHHH
Confidence 01000001100 011112344443 344578899999998766543211 112346688999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEee---cceEEEE
Q psy16206 302 LFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVS---DQWKVLG 378 (821)
Q Consensus 302 ~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~---~~~~~vG 378 (821)
++|+|++++.. ....+.+|.+++++|++++|+|+||.+.||+ +|+|. ..|.++.+++ ++++.||
T Consensus 308 l~A~Al~~~~~-----------~g~~~~~g~~l~~~l~~~~f~G~tG~v~~d~-~g~r~-~~~~v~~~~~~~~~~~~~~~ 374 (387)
T cd06386 308 LYALALHEVLK-----------NGYSKKDGTKITQRMWNRTFEGIAGQVSIDA-NGDRY-GDFSVIAMTDVEAGTYEVVG 374 (387)
T ss_pred HHHHHHHHHhh-----------CCCCCCCHHHHHHHHhCCceeeccccEEECC-CCCcc-ccEEEEEccCCCCccEEEEe
Confidence 99999999853 1223688999999999999999999999999 99996 5999998864 5699999
Q ss_pred EEec
Q psy16206 379 TWNT 382 (821)
Q Consensus 379 ~w~~ 382 (821)
.|..
T Consensus 375 ~~~~ 378 (387)
T cd06386 375 NYFG 378 (387)
T ss_pred EEcc
Confidence 9975
No 17
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=100.00 E-value=1.6e-39 Score=356.98 Aligned_cols=332 Identities=18% Similarity=0.271 Sum_probs=264.0
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHH-HHhhcCeEEEEc-CC-Ccc--
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMC-NATSEGIAAIFG-PQ-SIE-- 75 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~-~li~~~V~aiiG-p~-~s~-- 75 (821)
||||+++|. ...++|+++|++++|++.+ .+.+.+++....+.+ +++.+++..+| +|++++|.|||| +. ++.
T Consensus 20 i~IG~i~~~--~~~~~~~~~Ai~~~N~~~~-~~~~~~l~~~~i~~~-~~~~~~a~~~~~~Li~~~V~aii~~~~~ss~~~ 95 (377)
T cd06379 20 VNIGAVLSN--KKHEQEFKEAVNAANVERH-GSRKIKLNATTITHD-PNPIQTALSVCEQLISNQVYAVIVSHPPTSNDH 95 (377)
T ss_pred EEEeEEecc--hhHHHHHHHHHHHHhhhhc-CCcceeeccceEeec-CChhhHHHHHHHHHhhcceEEEEEeCCCCCccc
Confidence 689999984 4678999999999999654 244445555444434 46666666666 577889999973 33 333
Q ss_pred -hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCch----hHHH
Q psy16206 76 -NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNL----VYLQ 150 (821)
Q Consensus 76 -~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~----~~~~ 150 (821)
.+.+++.+|+.++||+|+++++++.+++...++|+||+.|++..+++++++++++++|++|+++|+++++. ..++
T Consensus 96 ~~~~~v~~~~~~~~iP~Is~~a~~~~ls~~~~~~~~~R~~psd~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~ 175 (377)
T cd06379 96 LTPTSVSYTAGFYRIPVVGISTRDSIFSDKNIHLSFLRTVPPYSHQADVWLEMLRSFKWNKVILLVSDDHEGRAAQKRFE 175 (377)
T ss_pred ccHHHHHHHhhCCCCcEEecccCCccccCccccccEEEecCCHHHHHHHHHHHHHHcCCeEEEEEEEcCcchhHHHHHHH
Confidence 47788899999999999997766554555568999999999999999999999999999999999998843 3334
Q ss_pred HHHHhcCCCCCcCCCCCC----eEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEE
Q psy16206 151 QVLENAHDDDKEIRPGRP----SVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNY 225 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~----~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~ 225 (821)
+.+++. |+ ++. ...++++..|+++.|++|++.++|+|++.|...++..+++||+++||++.+|+|
T Consensus 176 ~~~~~~----------g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vIvl~~~~~~~~~l~~qa~~~g~~~~~~~w 245 (377)
T cd06379 176 TLLEER----------EIEFKIKVEKVVEFEPGEKNVTSLLQEAKELTSRVILLSASEDDAAVIYRNAGMLNMTGEGYVW 245 (377)
T ss_pred HHHHhc----------CCccceeeeEEEecCCchhhHHHHHHHHhhcCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCEEE
Confidence 444433 45 554 345777778999999999999999999999999999999999999999999999
Q ss_pred EEecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHH
Q psy16206 226 ILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAA 305 (821)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~ 305 (821)
++++. .... .....|++|+++... ..+++++||||+++|+
T Consensus 246 i~t~~----~~~~------~~~~~g~~g~~~~~~------------------------------~~~~~~~yDAV~~~A~ 285 (377)
T cd06379 246 IVSEQ----AGAA------RNAPDGVLGLQLING------------------------------KNESSHIRDAVAVLAS 285 (377)
T ss_pred EEecc----cccc------ccCCCceEEEEECCC------------------------------CCHHHHHHHHHHHHHH
Confidence 99993 2111 122367888776432 1245789999999999
Q ss_pred HHHHhhccCCC-CCCCCCCCCC-CCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecC
Q psy16206 306 ALQSLGERKPL-PTPLSCENPS-SWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTA 383 (821)
Q Consensus 306 Al~~~~~~~~~-~~~~~c~~~~-~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~ 383 (821)
|++++.+.... .+...|.+.. +|.+|..++++|++++|+|+||+|.||+ +|+|....|+|+++++.++++||.|++.
T Consensus 286 Al~~~~~~~~~~~~~~~c~~~~~~~~~g~~l~~~l~~v~f~G~tg~i~Fd~-~Gd~~~~~~~I~~~~~~~~~~VG~w~~~ 364 (377)
T cd06379 286 AIQELFEKENITEPPRECVGNTVIWETGPLFKRALMSSKYPGETGRVEFND-DGDRKFANYDIMNIQNRKLVQVGLYNGD 364 (377)
T ss_pred HHHHHHcCCCCCCCCccccCCCCCCcchHHHHHHHHhCCcCCccCceEECC-CCCccCccEEEEEecCCCceEeeEEcCc
Confidence 99999764444 5567897643 6899999999999999999999999999 9999889999999999999999999874
Q ss_pred CCcce
Q psy16206 384 FGLNH 388 (821)
Q Consensus 384 ~gl~~ 388 (821)
.+.+
T Consensus 365 -~l~~ 368 (377)
T cd06379 365 -ILRL 368 (377)
T ss_pred -EEEe
Confidence 4443
No 18
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=100.00 E-value=8.8e-40 Score=352.41 Aligned_cols=323 Identities=36% Similarity=0.667 Sum_probs=277.1
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIE 81 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~ 81 (821)
|||+|+++++...++|+++|+++||++++ ++++.+|++.+.|++.+++..+++++|+|+.+||.+||||.+|..+.+++
T Consensus 1 ~iG~i~~~~~~~~~~a~~lAv~~iN~~gg-il~~~~l~~~~~d~~~~~~~~a~~~a~~li~~~V~aiiG~~~S~~~~av~ 79 (324)
T cd06368 1 RIGAIFDEDARQEELAFRFAIDRINTNEE-ILAKFTLVPDIDELNTNDSFELTNKACDLLSQGVAAIFGPSSSSSANTVQ 79 (324)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhccccc-ccCCceeeeEEEEecCCChHHHHHHHHHHHhcCcEEEECCCCHHHHHHHH
Confidence 79999999998889999999999999999 77778999999996568999999999999988999999999999999999
Q ss_pred HHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCC
Q psy16206 82 SMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDK 161 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~ 161 (821)
++++.++||+|++++++...+ .++.+++.|++..++.++++++++++|++|+++|+++++...++.+++...
T Consensus 80 ~i~~~~~ip~is~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~~~~~l~~~~~~~~---- 151 (324)
T cd06368 80 SICDALEIPHITTSWSPNPKP----RQFTINLYPSMRDLSDALLDLIKYFGWRKFVYIYDSDEGLLRLQELLDALS---- 151 (324)
T ss_pred HHHhccCCCcEEecCCcCCCC----CcceEEecCCHHHHHHHHHHHHHhcCCCEEEEEECCcHhHHHHHHHHHhhc----
Confidence 999999999999976644312 345566778888899999999999999999999998888888888888776
Q ss_pred cCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccccCc
Q psy16206 162 EIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVDF 241 (821)
Q Consensus 162 ~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 241 (821)
..|.++....+.+..+|++++|.+|++.++++|++.|.+.++..+++||+++||..+.|+|++++ .+....+.
T Consensus 152 ---~~g~~v~~~~~~~~~~d~~~~l~~i~~~~~d~Vi~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~----~~~~~~~~ 224 (324)
T cd06368 152 ---PKGIQVTVRRLDDDTDMYRPLLKEIKREKERRIILDCSPERLKEFLEQAVEVGMMSEYYHYILTN----LDFHTLDL 224 (324)
T ss_pred ---cCCceEEEEEecCCchHHHHHHHHHhhccCceEEEECCHHHHHHHHHHHHHhccccCCcEEEEcc----CCccccch
Confidence 55777776665554458999999999999999999999999999999999999998999999988 44333333
Q ss_pred ccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy16206 242 QDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKPLPTPLS 321 (821)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~ 321 (821)
........++++++...++++..++|.++|+++++... +..+...|+.+++++||||+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~p~~~aa~~yDav~~~------------------ 284 (324)
T cd06368 225 ELFRYGGVNITGFRLVDPDNPEVQKFIQRWERSDHRIC--PGSGLKPIKTESALTYDAVLLF------------------ 284 (324)
T ss_pred hhhhcCCceEEEEEEecCCChHHHHHHHHHHhcccccc--CCCCCCCcchhhHhhhcEEEEe------------------
Confidence 44444557888988888889999999999999885431 1222235788999999998874
Q ss_pred CCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCc
Q psy16206 322 CENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGL 386 (821)
Q Consensus 322 c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl 386 (821)
||+++||+ +|+|.++.++|+++..++++.+|.|++..|+
T Consensus 285 -------------------------tg~~~f~~-~g~~~~~~~~i~~~~~~~~~~~g~W~~~~~~ 323 (324)
T cd06368 285 -------------------------TGRIQFDE-NGQRSNFTLDILELKEGGLRKVGTWNPEDGL 323 (324)
T ss_pred -------------------------eeeeEeCC-CCcCcceEEEEEEEcCCCceEEEEECCCCCC
Confidence 99999999 9999999999999999999999999998876
No 19
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=100.00 E-value=2.8e-39 Score=353.45 Aligned_cols=331 Identities=19% Similarity=0.265 Sum_probs=275.6
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCcch---
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSIEN--- 76 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s~~--- 76 (821)
++||++++.++. +.+++.|+..+|.+.. +..+.++++++.| +.+||.++++++|+++.+ +|.+|+||.+|..
T Consensus 3 ~~ig~~~~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~l~~~d-~~~d~~~~~~~~~~~l~~~~v~~iig~~~s~~~~~ 78 (362)
T cd06367 3 VNIGVVLSGSSS--EPAFRDAVTAANFRHN-LPYNLSLEAVAVS-NDTDPISLLLSVCDLLVVQVVAGVVFSDPTDEEAV 78 (362)
T ss_pred eEEEEEecCCcc--hhhHHHHhhhcccccc-CCcccceEEEEEe-cCCCHHHHHHHHHHHhcccceEEEEecCCCCccch
Confidence 689999999974 5899999999998875 5678999999999 669999999999999877 8999999999998
Q ss_pred HHHHHHHhccCCCceeeeccCCCCC-CCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc----hhHHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKY-FIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN----LVYLQQ 151 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~-~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~----~~~~~~ 151 (821)
+.+++++|+.++||+|+++++...+ +++..++|+||+.|++..+++++++++++++|++|++||+++++ ...+++
T Consensus 79 ~~~~~~v~~~~~iP~Is~~~~~~~~~s~~~~~~~~~R~~p~~~~~~~ai~~ll~~~~w~~vaii~~~~~~g~~~~~~l~~ 158 (362)
T cd06367 79 AQILDFTSAQTRIPVVGISGRESIFMSDKNIHSLFLQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDPGYRDFLDRVET 158 (362)
T ss_pred hhhhhhhhhhhcCcEEEeeccccccccCCCcccceEeecCcHHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHH
Confidence 9999999999999999997775554 55678999999999999999999999999999999999999885 333444
Q ss_pred HHHhcCCCCCcCCCCCCe--EE-EEEcCCCCC-ChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEE
Q psy16206 152 VLENAHDDDKEIRPGRPS--VT-IRQLPPDTD-DYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~--v~-~~~~~~~~~-d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
.+++. |.+ +. ...++.... ++.+.+.++++.++++||+.|+..++..++++|.++||++++|+||+
T Consensus 159 ~l~~~----------g~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~g~~~~~~~wI~ 228 (362)
T cd06367 159 TLEES----------FVGWEFQLVLTLDLSDDDGDARLLRQLKKLESRVILLYCSKEEAERIFEAAASLGLTGPGYVWIV 228 (362)
T ss_pred HHHhc----------ccceeeeeeEEeccCCCcchHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 44443 344 43 234544433 89999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHH
Q psy16206 228 SLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAAL 307 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al 307 (821)
+++ |.. .... ......|++++++... ..+++++||||+++|+|+
T Consensus 229 ~~~--~~~-~~~~---~~~~~~G~~g~~~~~~------------------------------~~~~~~~~Dav~~~a~Al 272 (362)
T cd06367 229 GEL--ALG-SGLA---PEGLPVGLLGVGLDTW------------------------------YSLEARVRDAVAIVARAA 272 (362)
T ss_pred Ccc--ccc-ccCC---ccCCCCeeEEEEeccc------------------------------ccHHHHHHHHHHHHHHHH
Confidence 993 221 1121 2223358888876432 234688999999999999
Q ss_pred HHhhcc-CCC-CCCCCCCCCCC--CCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe-ecceEEEEEEec
Q psy16206 308 QSLGER-KPL-PTPLSCENPSS--WQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV-SDQWKVLGTWNT 382 (821)
Q Consensus 308 ~~~~~~-~~~-~~~~~c~~~~~--~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~ 382 (821)
+++.+. ... .+...|..... |.+|..+.++|++++|+|++|+|.||+ +|+|.++.|+|++++ ..+|++||.|++
T Consensus 273 ~~~~~~~~~~~~~~~~C~~~~~~~~~~g~~l~~~l~~~~f~G~tg~v~F~~-~G~~~~~~~~I~~l~~~~~~~~VG~W~~ 351 (362)
T cd06367 273 ESLLRDKGALPEPPVNCYDTANKRESSGQYLARFLMNVTFDGETGDVSFNE-DGYLSNPKLVIINLRRNRKWERVGSWEN 351 (362)
T ss_pred HHHHHhcCCCCCCCCCcCCCCCCCCCchHHHHHHHhcccccCCCCceeECC-CcccccceEEEEEecCCCcceEEEEEcC
Confidence 998753 334 66788987543 899999999999999999999999999 999998999999999 788999999985
No 20
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=100.00 E-value=3e-39 Score=363.74 Aligned_cols=371 Identities=15% Similarity=0.231 Sum_probs=283.1
Q ss_pred CcEEEEeCCCc----------------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh--
Q psy16206 1 MKIVGIFGPNE----------------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-- 62 (821)
Q Consensus 1 i~IG~i~~~~~----------------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-- 62 (821)
|.||++||... ....+|+++|+|+||++++ +++|++|+++++| +|+++..+++.+.+++.
T Consensus 3 ~~igglfp~h~~~~~~~~c~~~~~~~G~~~~~a~~~Aie~IN~~~~-iLpg~~L~~~i~D-~~~~~~~a~~~a~~li~~~ 80 (452)
T cd06362 3 IILGGLFPVHSKGTGGEPCGEIKEQRGIQRLEAMLFALDEINNDPT-LLPGITLGAHILD-TCSRDTYALEQSLEFVRAS 80 (452)
T ss_pred eEEEEEEecccCCCCCCCCcCccccchHHHHHHHHHHHHHhhCCCC-CCCCCeeCcEEEE-eCCCchHHHHHHHHHHhhh
Confidence 46888888653 3458999999999999999 8899999999999 77999999999988884
Q ss_pred ---------------------cCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHH
Q psy16206 63 ---------------------EGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLIS 121 (821)
Q Consensus 63 ---------------------~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~ 121 (821)
.+|.|||||.+|..+.+++++++.+++|+|+++++...+++...++|+||+.|++..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~aviG~~~S~~~~av~~~~~~~~ip~Is~~sts~~ls~~~~~~~~fR~~p~d~~~~ 160 (452)
T cd06362 81 LTKIDDCVYCDGGSPPPNNSPKPVAGVIGASYSSVSIQVANLLRLFKIPQISYASTSPELSDKTRYDYFSRTVPPDSFQA 160 (452)
T ss_pred hhcCCccccccCCCcccccCCCCeEEEECCCCCchHHHHHHHhccccCcccccccCchhhccccccCCEEEecCChHHHH
Confidence 38999999999999999999999999999999776554466667899999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEEecCC-chhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCC--CCCChHHHHHHhhc-CCCcE
Q psy16206 122 KGISVIINDMDWDTFTIIYETHD-NLVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPP--DTDDYRPLLKEIKN-SSESH 196 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~--~~~d~~~~l~~lk~-~~~~~ 196 (821)
.++++++++++|++|++|+++++ +....+.+.+.+. ..|+++... .++. +..|+++.+++|++ .++++
T Consensus 161 ~a~~~~l~~~~w~~vaii~~~~~~G~~~~~~~~~~~~-------~~gi~i~~~~~~~~~~~~~d~~~~l~~l~~~~~a~v 233 (452)
T cd06362 161 QAMVDIVKAFNWTYVSTVASEGNYGEKGIEAFEKLAA-------ERGICIAGSEKIPSSATEEEFDNIIRKLLSKPNARV 233 (452)
T ss_pred HHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHHH-------HCCeeEEEEEEcCCCCCHHHHHHHHHHHhhcCCCeE
Confidence 99999999999999999999987 4444455555554 556777643 4543 36789999999987 47999
Q ss_pred EEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhh------
Q psy16206 197 ILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNG------ 270 (821)
Q Consensus 197 ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~------ 270 (821)
||+.+...++..+++||+++|+. ..+.|+.+++ |... ............|++++.....+.+.+++|++.
T Consensus 234 iil~~~~~~~~~~~~~a~~~g~~-~~~~~i~~~~--~~~~-~~~~~~~~~~~~g~~~~~~~~~~i~~f~~~l~~l~~~~~ 309 (452)
T cd06362 234 VVLFCREDDIRGLLAAAKRLNAE-GHFQWIASDG--WGAR-NSVVEGLEDVAEGAITIELQSAEVPGFDEYFLSLTPENN 309 (452)
T ss_pred EEEEcChHHHHHHHHHHHHcCCc-CceEEEEecc--cccc-chhhcccccccceEEEEEecccccccHHHHhhhCCcCcC
Confidence 99999999999999999999997 4578998874 3321 111123333456777666555444444443322
Q ss_pred ---------hhhhhh----ccc-------cccccc---ccccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q psy16206 271 ---------WIYEEN----ERG-------RSLNVR---AETVKIEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPSS 327 (821)
Q Consensus 271 ---------~~~~~~----~~~-------~~~~~~---~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~ 327 (821)
|+..+. ... |..... ......++++.||||+++|+||+++..+........|....
T Consensus 310 ~~~~~~~~~w~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~vyDAV~a~A~AL~~~l~~~~~~~~~~c~~~~- 388 (452)
T cd06362 310 SRNPWFREFWEQKFNCKLTGNGSTKDNTCCTERILLLSNYEQESKVQFVIDAVYAMAHALHNMHRDLCPGTTGLCDAMK- 388 (452)
T ss_pred CCChHHHHHHHHhcCCCcCCCCccccCCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCcc-
Confidence 111111 000 000000 01234478899999999999999997543222224576533
Q ss_pred CCCchhHHHhhhhceecccee-eEEEeCCCCccceeEEEEEEEee----cceEEEEEEecCCCcc
Q psy16206 328 WQHGLGIGNLMKSITIDGMTG-RINLDSQTGRRNSFSLEFVEYVS----DQWKVLGTWNTAFGLN 387 (821)
Q Consensus 328 ~~~g~~l~~~l~~~~~~G~tG-~i~fd~~~g~~~~~~~~i~~~~~----~~~~~vG~w~~~~gl~ 387 (821)
+.++..|+++|++++|+|++| +|.||+ +|++. ..|+|++++. .++++||.|+++.||+
T Consensus 389 ~~~~~~l~~~l~~v~f~g~tg~~v~Fd~-~G~~~-~~y~I~~~~~~~~~~~~~~VG~w~~~~~~~ 451 (452)
T cd06362 389 PIDGRKLLFYLRNVSFSGLAGGPVRFDA-NGDGP-GRYDIFNYQRTNGKYDYVKVGSWKGELSLN 451 (452)
T ss_pred CCCHHHHHHHHHhCCcCCCCCceEEECC-CCCCC-CceEEEEEEEcCCceEEEEEEEEecccccC
Confidence 778999999999999999998 899999 99987 5899999984 3489999999988875
No 21
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=100.00 E-value=2.1e-39 Score=358.78 Aligned_cols=359 Identities=18% Similarity=0.249 Sum_probs=280.5
Q ss_pred cEEEEeCCCc-------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCC----ChhHHHHHHHHHhhc-CeEEEE
Q psy16206 2 KIVGIFGPNE-------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENY----DSLHTAKLMCNATSE-GIAAIF 69 (821)
Q Consensus 2 ~IG~i~~~~~-------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~----~~~~a~~~a~~li~~-~V~aii 69 (821)
+||+++|.+| +.+..|+++|+++||++++ +++|++|+++++| +++ ++..++..+.+++.+ +|.|||
T Consensus 1 ~~g~l~p~~~~~~~~~~~~~~~a~~lAve~IN~~gg-~l~G~~l~~~~~D-~~~~~~~~~~~a~~~a~~~~~~~~v~aii 78 (396)
T cd06373 1 TLAVLLPKNNTSYPWSLPRVGPAIDIAVERVNADPG-LLPGHNITLVFED-SECKCGCSESEAPLVAVDLYFQHKPDAFL 78 (396)
T ss_pred CeEEEcCCCCCCcccchhhhhhHHHHHHHHHhcCCC-cCCCeEEEEEEec-CccccccchhhhHHHHHHHHhccCCeEEE
Confidence 6999999985 5788999999999999998 7889999999999 446 888888888888755 999999
Q ss_pred cCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc----
Q psy16206 70 GPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN---- 145 (821)
Q Consensus 70 Gp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~---- 145 (821)
||.||..+.+++++++.++||+|+++++.+.+++...++|+||+.|++..++.++++++++++|++++++++++++
T Consensus 79 Gp~~S~~~~av~~~~~~~~ip~Is~~as~~~lt~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vaii~~~~~~~~~~ 158 (396)
T cd06373 79 GPGCEYAAAPVARFAAHWNVPVLTAGAPAAGFSDKSEYSTLTRTGPSYTKLGEFVLALHEHFNWSRAALLYHDDKNDDRP 158 (396)
T ss_pred CCCccchhHHHHHHHhcCCCceECccCCccccccchhcCceeeccccHHHHHHHHHHHHHHcCCeEEEEEEECCCCCcch
Confidence 9999999999999999999999999776544354457889999999999999999999999999999999998763
Q ss_pred -hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 146 -LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
....+.+.+... ..|.++....+.++ ..||.++|++|++.. |+|++.+...++..+++||+++|+....
T Consensus 159 ~~~~~~~~~~~~~-------~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~-~vii~~~~~~~~~~~~~qa~~~g~~~~~ 230 (396)
T cd06373 159 CYFTLEGVYTVLK-------EENITVSDFPFDEDKELDDYKELLRDISKKG-RVVIMCASPDTVREIMLAAHRLGLTSGE 230 (396)
T ss_pred HHHHHHHHHHHHh-------hcCceeeEEeecCCccccCHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHHHHcCCCCCc
Confidence 223444444444 44666665566655 489999999999876 9999999999999999999999999999
Q ss_pred eEEEEeccc--------cccc-ccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhH
Q psy16206 223 QNYILSLTS--------YWIN-AHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEA 293 (821)
Q Consensus 223 ~~~i~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a 293 (821)
|+|+..+-. .|.. ......+.......+++++....++++.+++|.++|+++...++. .......++.++
T Consensus 231 yv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~~-~~~~~~~~~~~a 309 (396)
T cd06373 231 YVFFNIDLFGSSLYGGGPWWWERGDEDDEKAKEAYQALMTITLREPDNPEYKEFSLEVKERAKKKFN-TTSDDSLVNFFA 309 (396)
T ss_pred EEEEEEccchhhhccCCCCcCCCCCcccHHHHHHHHHheEEecCCCCChHHHHHHHHHHHHhhhcCC-CCcchhHHHHHH
Confidence 999986510 0100 000000011112246777766666778899999999876432210 011122467889
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEE---e
Q psy16206 294 ALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEY---V 370 (821)
Q Consensus 294 ~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~---~ 370 (821)
+.+||||+++++|++++.++ .+.+.++.+++++|++++|+|++|++.||+ +|++. ..|.++.+ .
T Consensus 310 ~~~YDav~~~a~Al~~~~~~-----------~~~~~~~~~i~~~l~~~~f~G~tG~v~fd~-~G~~~-~~~~v~~~~~~~ 376 (396)
T cd06373 310 GAFYDAVLLYALALNETLAE-----------GGDPRDGTNITRRMWNRTFEGITGNVSIDE-NGDRE-SDFSLWDMTDTE 376 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----------cCCCCChHHHHHHhcCCceecccCceEeec-CCccc-ceeeeeeccCCC
Confidence 99999999999999998521 112468899999999999999999999999 99985 66777654 5
Q ss_pred ecceEEEEEEecCC
Q psy16206 371 SDQWKVLGTWNTAF 384 (821)
Q Consensus 371 ~~~~~~vG~w~~~~ 384 (821)
++.++.+|.+++..
T Consensus 377 ~g~~~~~~~~~~~~ 390 (396)
T cd06373 377 TGTFEVVANYNGSN 390 (396)
T ss_pred CceEEEEeeccccc
Confidence 77899999999853
No 22
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=100.00 E-value=6.6e-39 Score=354.12 Aligned_cols=361 Identities=16% Similarity=0.178 Sum_probs=275.8
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
+||++.|.++ .....|+++|+++||++++ +++|++|+++++| ++|++..++.++|+++.+ +|.|||||.||
T Consensus 1 ~vg~~~p~~~~~~~~~~~~~~a~~lAi~~IN~~~~-~l~~~~l~~~~~D-~~~~~~~a~~~~~~l~~~~~v~aiiGp~~S 78 (391)
T cd06372 1 TVGFQAPWNISHPFSAQRLGAALQIAMDKVNSDPV-YLGNYSMEFTYTN-STCSAKESLAGFIDQVQKEHISALFGPACP 78 (391)
T ss_pred CceeeccccccCchhhhhHHHHHHHHHHHHhcCCC-CCCCceEEEEEec-CCCCccHHHHHHHHHHHhcCceEEECCCCC
Confidence 6899999655 6677899999999999998 8888999999999 568999999999999986 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC--chh---HH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD--NLV---YL 149 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~--~~~---~~ 149 (821)
..+.+++++++.++||+|+++++++.+++...+++++|+.|++..++.++++++++++|++|+++|++++ ... .+
T Consensus 79 ~~~~av~~va~~~~iP~is~~s~s~~ls~~~~~~~~~r~~p~~~~~~~a~~~l~~~~~w~~vaii~~~~~~~~~~~~~~~ 158 (391)
T cd06372 79 EAAEVTGLLASQWNIPMFGFVGQTAKLDNRFLYDTYVKLVPPKQKIGEVLQKSLQHFGWKHIGLFGGSSRDSSWDEVDEL 158 (391)
T ss_pred cHHHHHHHHHhccCccEEEeecCCccccccccCCceEEecCchhhHHHHHHHHHHHCCCeEEEEEEeccccchhhhHHHH
Confidence 9999999999999999999976655446566789999999999999999999999999999999996543 222 22
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEe
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILS 228 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~ 228 (821)
.+.++..- ..++.+.. ..++++..++...+.+.+..++|+||++++..++..+++||+++||..+.|+|+++
T Consensus 159 ~~~~~~~~-------~~~~~i~~~~~~~~~~~d~~~~~l~~~~~~~~vii~~~~~~~~~~i~~~a~~~g~~~~~y~~i~~ 231 (391)
T cd06372 159 WKAVENQL-------KFHFNITATVRYSSSNPDLLQEKLRYISSVARVIILICSSEDAKAILQAAEKLGLMKGKFVFFLL 231 (391)
T ss_pred HHHHHHHH-------hhCEEEEEEEecCCCChHHHHHHHHhhhccceEEEEEcChHHHHHHHHHHHHcCCCCCCEEEEEe
Confidence 22222221 22444543 45666667777777666678999999999999999999999999999888999996
Q ss_pred cc---cccccccccCc-ccccCCceeeEEEEeecC-CChhHHHhhhhhhhhhhccccc-ccccccccchhHHHHHHHHHH
Q psy16206 229 LT---SYWINAHTVDF-QDFQPGYANITTVRMINP-TNPHIRSIMNGWIYEENERGRS-LNVRAETVKIEAALMYDAVYL 302 (821)
Q Consensus 229 ~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~YDAv~~ 302 (821)
.. ..|........ ........++.++..... ..+..++|.++|++++...+.. ..........+++++||||++
T Consensus 232 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~~~~~~~~p~~~~~~~~~~~~~~a~~~yDav~~ 311 (391)
T cd06372 232 QQFEDNFWKEVLTDDQVQHLPKVYESVFLIAPSSYGGYSGGYEFRKQVYQKLKRPPFQSSLSSEEQVSPYSAYLHDAVLL 311 (391)
T ss_pred hhhcCccccccCCCcchHHHHHHHhhEEEEecCCCCCCcchhHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHH
Confidence 42 12321111100 111112345555544332 2455778999988877533110 001112456889999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhh---hceeccceeeEEEeCCCCccceeEEEEEEEee----cceE
Q psy16206 303 FAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMK---SITIDGMTGRINLDSQTGRRNSFSLEFVEYVS----DQWK 375 (821)
Q Consensus 303 ~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~---~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~----~~~~ 375 (821)
+|+|++++.+. ...+.+|..++++|+ +++|+|+||+|.||+ +|+|. ..|.|++++. ..++
T Consensus 312 ~A~Al~~~~~~-----------g~~~~~g~~l~~~l~~~~~~~f~G~tG~v~fd~-~G~r~-~~y~i~~~~~~~~~~~~~ 378 (391)
T cd06372 312 YALAVKEMLKA-----------GKDFRNGRQLVSTLRGANQVELQGITGLVLLDE-QGKRQ-MDYSVYALQKSGNSSLFL 378 (391)
T ss_pred HHHHHHHHHhc-----------CCCCCCHHHHHHHHhhccCceEeccceeEEECC-CCCcc-eeEEEEeccccCCcccee
Confidence 99999998631 123678999999999 689999999999999 99995 8999999975 2389
Q ss_pred EEEEEecCC
Q psy16206 376 VLGTWNTAF 384 (821)
Q Consensus 376 ~vG~w~~~~ 384 (821)
.||.|+...
T Consensus 379 ~vg~~~~~~ 387 (391)
T cd06372 379 PFLHYDSHQ 387 (391)
T ss_pred eEEEecchh
Confidence 999999854
No 23
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=100.00 E-value=4.6e-39 Score=356.93 Aligned_cols=358 Identities=18% Similarity=0.222 Sum_probs=272.0
Q ss_pred cEEEEeCCCc-------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHH-----HHHHHHHh-hcCeEEE
Q psy16206 2 KIVGIFGPNE-------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHT-----AKLMCNAT-SEGIAAI 68 (821)
Q Consensus 2 ~IG~i~~~~~-------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a-----~~~a~~li-~~~V~ai 68 (821)
+||+++|+++ +.+..|+++|+++||++++ +++|++|++++.|++ +++..+ ...+.++. .++|.||
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~~a~~lAve~IN~~~g-il~g~~l~~~~~D~~-~~~~~c~~~~~~~~~~~~~~~~~v~ai 78 (405)
T cd06385 1 TLAVILPLTNTSYPWAWPRVGPALERAIDRVNADPD-LLPGLHLQYVLGSSE-NKEGVCSDSAAPLVAVDLKFTHNPWAF 78 (405)
T ss_pred CeeEECCCCCCcCccchhhhHHHHHHHHHHHhcCCC-CCCCceEEEEEcccc-ccCCCCccccchHHHHHHHHhcCCcEE
Confidence 6999999886 6688999999999999998 788999999999953 444433 33333333 4599999
Q ss_pred EcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEE-EEEecCCch-
Q psy16206 69 FGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFT-IIYETHDNL- 146 (821)
Q Consensus 69 iGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~-ii~~~~~~~- 146 (821)
|||.||..+.+++++++.++||+|+++++++.+++...++|+||+.|++..++.++++++++|+|++++ ++|.++.+.
T Consensus 79 iGp~~S~~~~~va~~a~~~~iP~Is~~a~~~~l~~~~~~~~~~R~~p~~~~~~~a~~~~~~~~~w~~va~ii~~~~~~~~ 158 (405)
T cd06385 79 IGPGCDYTASPVARFTTHWDVPLVTAGAPALGFGVKDEYATITRTGPTHKKLGEFVLHIHQHFGWRSHAMLIYSDNKVDD 158 (405)
T ss_pred ECCCccchHHHHHHHHhccCCcEEccccChhhcCCcccCcceEEecCchHHHHHHHHHHHHhCCCeEEEEEEEecCcccc
Confidence 999999999999999999999999997775444666789999999999999999999999999999998 566655321
Q ss_pred -h---HHHHHHHhcCCCCCcCCCCCCeEEEEEcC-CCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 147 -V---YLQQVLENAHDDDKEIRPGRPSVTIRQLP-PDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 147 -~---~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
. ..+.+.+... ..|++|....+. .+..|++++|++|++.. |+|++++...++..++++|.++||+++
T Consensus 159 ~~~~~~~~~l~~~~~-------~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-~iii~~~~~~~~~~i~~~a~~~g~~~~ 230 (405)
T cd06385 159 RPCYFAMEGLYMELK-------KNNITVVDLVFEEDDLINYTTLLQDIKQKG-RVIYVCCSPDIFRRLMLQFWREGLPSE 230 (405)
T ss_pred cchHHHHHHHHHHHH-------hCCeEEEEeeccCCchhhHHHHHHHHhhcc-eEEEEeCCHHHHHHHHHHHHHcCCCCC
Confidence 1 2344444444 456777665554 34679999999998765 999999999999999999999999999
Q ss_pred ceEEEEecccccccccc--c-------C-c-ccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccc
Q psy16206 222 YQNYILSLTSYWINAHT--V-------D-F-QDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVK 290 (821)
Q Consensus 222 ~~~~i~~~~~~~~~~~~--~-------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 290 (821)
.|+||+++... .+... . + . .......++++......+.++.+++|.++|+++....+ ........++
T Consensus 231 ~y~~i~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~~ 308 (405)
T cd06385 231 DYVFFYIDLFG-ASLQGPDPKRPWYRGDADDAAAREAFQSVKILTYKEPQNPEYKEFLSDLKTDAKEMF-NFTVEDSLMN 308 (405)
T ss_pred cEEEEEeecch-hhccCCCCCCCCCCCCcccHHHHHhhheeEEEeCCCCCChhHHHHHHHHHHHhhccC-CCccchhhHH
Confidence 99999986200 00000 0 0 0 01111235555555555667889999999988642211 1110112367
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEE-
Q psy16206 291 IEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEY- 369 (821)
Q Consensus 291 ~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~- 369 (821)
.+++++||||++++.|++++.+ ..+.+.+|+.++++|++++|+|++|.+.||+ +|+|. ..|.++++
T Consensus 309 ~~aa~~YDav~l~a~Al~~~~~-----------~~~~~~~g~~i~~~l~~~~f~G~tG~v~fd~-~G~r~-~~~~~~~~~ 375 (405)
T cd06385 309 IIAGGFYDGVMLYAHALNETMA-----------KGGTRPPGTAITQRMWNRTFYGVTGFVKIDD-NGDRE-TDFALWDMT 375 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----------cCCCCCCHHHHHHHhhCceEeeceeEEEEcC-CCCEe-ceeEEEEcc
Confidence 8999999999999999999853 1223568999999999999999999999999 99995 67777644
Q ss_pred --eecceEEEEEEecCC
Q psy16206 370 --VSDQWKVLGTWNTAF 384 (821)
Q Consensus 370 --~~~~~~~vG~w~~~~ 384 (821)
++++++.+|.|+...
T Consensus 376 ~~~~g~~~~v~~~~~~~ 392 (405)
T cd06385 376 DTESGDFQVVSVYNGTQ 392 (405)
T ss_pred CCCCCcEEEEEEEcccC
Confidence 678899999999743
No 24
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=100.00 E-value=2.6e-39 Score=352.46 Aligned_cols=336 Identities=19% Similarity=0.323 Sum_probs=277.5
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s~~ 76 (821)
|||+++|++| ..+.+|+++|+++||++++ +++|++|+++++| ++++|..+++++++|+.+ +|.+||||.||..
T Consensus 1 ~IG~~~p~sGa~~G~~~~~~~~lAv~~iN~~gg-~~~g~~i~~~~~D-~~~~~~~a~~~a~~l~~~~~v~~viG~~~s~~ 78 (350)
T cd06366 1 RIGAIFDLSGSWIGKAALPAIEMALEDVNADNS-ILPGYRLVLHVRD-SKCDPVQAASAALDLLENKPVVAIIGPQCSSV 78 (350)
T ss_pred CEEEEEecCCCcccHHHHHHHHHHHHHHhcCCC-cCCCcEEEEEecC-CCCCHHHHHHHHHHHhccCCceEEECCCcHHH
Confidence 7999999994 7789999999999999996 5789999999999 669999999999999998 9999999999999
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc-hhHHHHHHHh
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN-LVYLQQVLEN 155 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~-~~~~~~~~~~ 155 (821)
+.+++++++.+++|+|+++++...+++...++|+||+.|++..++.++++++++++|++|++|++++++ ....+.+.+.
T Consensus 79 ~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~ 158 (350)
T cd06366 79 AEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDA 158 (350)
T ss_pred HHHHHHHhhcCCeeEEeccCCCccccccccCCceEEcccchHhHHHHHHHHHHHCCCcEEEEEEEcCcccchhHHHHHHH
Confidence 999999999999999999776554455677899999999999999999999999999999999998874 3333444444
Q ss_pred cCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc-
Q psy16206 156 AHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS- 231 (821)
Q Consensus 156 ~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~- 231 (821)
.. ..|+++... .++++ ..|+.+.+++|++.++|+|++.+...++..+++|++++|+..+.++|++++..
T Consensus 159 ~~-------~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 231 (350)
T cd06366 159 LQ-------EAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWILTDWLS 231 (350)
T ss_pred HH-------HcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEECChHHHHHHHHHHHHcCCcCCCEEEEECcchh
Confidence 43 446777654 57664 57999999999999999999999999999999999999999888999988730
Q ss_pred -ccccccccCcccccCCceeeEEEEeecCC-ChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy16206 232 -YWINAHTVDFQDFQPGYANITTVRMINPT-NPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQS 309 (821)
Q Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~ 309 (821)
.|.+......+.......|++++..+.++ ++.+++|.++|+++++.+.+. ..++..+++++|||+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~----~~~p~~~a~~~YDav~~------- 300 (350)
T cd06366 232 SNWWSSSDCTDEEMLEAMQGVIGVRSYVPNSSMTLQEFTSRWRKRFGNENPE----LTEPSIYALYAYDAVWA------- 300 (350)
T ss_pred hhhccCCCCChHHHHHhhceEEEEeecccccCccHHHHHHHHHHHhcccCcC----cCCCCcccchhhhheee-------
Confidence 11000011112223345788888877666 788999999999988543111 12467889999999988
Q ss_pred hhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCcce
Q psy16206 310 LGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNH 388 (821)
Q Consensus 310 ~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~~ 388 (821)
+.+|+|++|+++||+ +|++.+..++++++.++++++||.|+++.|++.
T Consensus 301 ------------------------------~~~~~G~~G~v~fd~-~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 348 (350)
T cd06366 301 ------------------------------STNFNGLSGPVQFDG-GRRLASPAFEIINIIGKGYRKIGFWSSESGLSV 348 (350)
T ss_pred ------------------------------eceEEeeeeeEEEcC-CCccCCcceEEEEecCCceEEEEEEeCCCCccc
Confidence 136899999999999 999988999999999999999999999988763
No 25
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=100.00 E-value=1.5e-38 Score=351.77 Aligned_cols=359 Identities=19% Similarity=0.229 Sum_probs=291.7
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||+++|++| ..+..|+++|+|+||++++ +++|++|+++++| +++++..+++.+++|+.+ +|.|||||.||
T Consensus 1 kvG~~~~~sG~~~~~g~~~~~a~~lAve~iN~~g~-~i~g~~l~~~~~D-~~~~~~~a~~~a~~l~~~~~v~aiiG~~~s 78 (389)
T cd06352 1 TVGVLLPWNTDYPFSLARVGPAIQLAVERVNADPN-LLPGYDFTFVYLD-TECSESVALLAAVDLYWEHNVDAFIGPGCP 78 (389)
T ss_pred CeEEEcCCCCCCCchhhcchHHHHHHHHHHhcCCC-CCCCceEEEEEec-CCCchhhhHHHHHHHHhhcCCcEEECCCCh
Confidence 7999999998 6688999999999999996 6789999999999 668999999999999987 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC--chhHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD--NLVYLQQV 152 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~--~~~~~~~~ 152 (821)
..+.+++++++.+++|+|++++++..++++..++|+||+.|++..++.++++++++++|++++++++++. +....+.+
T Consensus 79 ~~~~a~~~~~~~~~ip~Is~~~~~~~~~~~~~~~~~fr~~~~~~~~~~a~~~~l~~~~~~~v~ii~~~~~~~g~~~~~~~ 158 (389)
T cd06352 79 YACAPVARLAAHWNIPMISWGCVALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNWHVAVVVYSDDSENCFFTLEAL 158 (389)
T ss_pred hHHHHHHHHHhcCCCCEecccccccccCccccCCceeecCCcHHHHHHHHHHHHHHcCceEEEEEEecCCccHHHHHHHH
Confidence 9999999999999999999877655445456789999999999999999999999999999999999886 44444445
Q ss_pred HHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEec
Q psy16206 153 LENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
.+... ..|+++... .++.. ..|+..+|+++++.+ ++|++.+.+.++..+++|++++|+....++|+.++
T Consensus 159 ~~~~~-------~~G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-~vii~~~~~~~~~~~l~q~~~~g~~~~~~~~i~~~ 230 (389)
T cd06352 159 EAALR-------EFNLTVSHVVFMEDNSGAEDLLEILQDIKRRS-RIIIMCGSSEDVRELLLAAHDLGLTSGDYVFILID 230 (389)
T ss_pred HHHHH-------hcCCeEEEEEEecCCccchhHHHHHHHhhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEEe
Confidence 45554 456777644 56665 589999999999887 99999999999999999999999988889999876
Q ss_pred ccccccccc------------cCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHH
Q psy16206 230 TSYWINAHT------------VDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMY 297 (821)
Q Consensus 230 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Y 297 (821)
. +.... ...+.......+++++......++.+++|.++|+++++..+..+......+..+++.+|
T Consensus 231 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Y 307 (389)
T cd06352 231 L---FNYSLPYQNSYPWERGDGDDEKAKEAYDAVLTITLRPPDNPEYEEFSEEVKEAAKRPPFNTDAEPEQVSPYAGYLY 307 (389)
T ss_pred h---hccccccCCCCCcccCCcccHHHHHHHHhheEEEecCCCCchHHHHHHHHHHHHhcccCccCCCccccchhhhhHH
Confidence 3 11110 00111122235677776666678889999999999886542222122345678999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEee--cceE
Q psy16206 298 DAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVS--DQWK 375 (821)
Q Consensus 298 DAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~--~~~~ 375 (821)
||++++++|++++..+ ...+.++..+.++|++.+|+|++|++.||+ +|+|. ..|.|+++++ +.+.
T Consensus 308 Dav~~~a~Al~~~~~~-----------~~~~~~~~~v~~~l~~~~f~g~~G~v~fd~-~G~~~-~~~~v~~~~~~~~~~~ 374 (389)
T cd06352 308 DAVLLYAHALNETLAE-----------GGDYNGGLIITRRMWNRTFSGITGPVTIDE-NGDRE-GDYSLLDLDSTGGQLE 374 (389)
T ss_pred HHHHHHHHHHHHHHHh-----------CCCCCchHHHHHHhcCcEEEeeeeeEEEcC-CCCee-eeEEEEEecCCCceEE
Confidence 9999999999999731 112567889999999999999999999999 99996 7899999986 5588
Q ss_pred EEEEEecCCCc
Q psy16206 376 VLGTWNTAFGL 386 (821)
Q Consensus 376 ~vG~w~~~~gl 386 (821)
.++...+..+-
T Consensus 375 ~~~~~~~~~~~ 385 (389)
T cd06352 375 VVYLYDTSSGG 385 (389)
T ss_pred EEEecccccee
Confidence 89988887654
No 26
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=100.00 E-value=5.6e-39 Score=355.32 Aligned_cols=360 Identities=14% Similarity=0.156 Sum_probs=273.4
Q ss_pred CcEEEEeCCCc-------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE-------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~-------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~ 73 (821)
||||++.|++| ....+|+++|+++||++++ +++|++|+++++| ++|++..+++++|+|+.++|.|||||.|
T Consensus 1 i~iG~~~pltG~~~a~~G~~~~~a~~lAv~~IN~~gg-il~g~~l~l~~~D-~~~~~~~a~~~~~~li~~~v~aiiGp~~ 78 (404)
T cd06370 1 IKVGYLAEWTTDRTDRLGLPISGALTLAVEDVNADPN-LLPGYKLQFEWVD-THGDEVLSIRAVSDWWKRGVVAFIGPEC 78 (404)
T ss_pred CeeEecccccCCccccccccHHHHHHHHHHHHhCCCC-CCCCCEEEEEEEe-cCCChHHHHHHHHHHHhcCceEEECCCc
Confidence 79999999987 3467999999999999999 7789999999999 5699999999999999889999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVL 153 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~ 153 (821)
|.. +++++++.++||+|++++++..+++...+++++|+.|++..++.++++++++++|++|++|++++++...+.+.+
T Consensus 79 S~~--~~a~i~~~~~iP~Is~~a~~~~l~~~~~~~~f~r~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~~g~~~~~~~ 156 (404)
T cd06370 79 TCT--TEARLAAAWNLPMISYKCDEEPVSDKSKYPTFARTVPPSIQVVKSVIALLKHFNWNKFSVVYENDSKYSSVFETL 156 (404)
T ss_pred hhH--HHHHHHhhcCCcEEecccCCccccccccCCCeEEcCCCHHHHHHHHHHHHHHCCCcEEEEEEecCcccHHHHHHH
Confidence 844 456799999999999977755445556788999999999999999999999999999999999998766666655
Q ss_pred HhcCCCCCcCCCCCCeEEE-EEcCCC-------CCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHcccc-CcceE
Q psy16206 154 ENAHDDDKEIRPGRPSVTI-RQLPPD-------TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLM-GDYQN 224 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~-~~~~~~-------~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~-~~~~~ 224 (821)
++.. +..|++|.. ..++.+ ..++..+|++++.. ++++|+.+...++..+++||+++||. ..+|+
T Consensus 157 ~~~~------~~~g~~iv~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~~~~~~l~qa~~~g~~~~~~y~ 229 (404)
T cd06370 157 KEEA------ELRNITISHVEYYADFYPPDPIMDNPFEDIIQRTKET-TRIYVFIGEANELRQFLMSMLDEGLLESGDYM 229 (404)
T ss_pred HHHH------HHcCCEEEEEEEECCCCCchhhhHHHHHHHHHhccCC-CEEEEEEcCHHHHHHHHHHHHHcCCCCCCcEE
Confidence 5432 145677754 456654 36888888888765 66777777778899999999999998 67889
Q ss_pred EEEeccc-cccccccc----------C-----cccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhccccccc----c
Q psy16206 225 YILSLTS-YWINAHTV----------D-----FQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLN----V 284 (821)
Q Consensus 225 ~i~~~~~-~~~~~~~~----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~ 284 (821)
|+..+.. .|.+.... . .+......++++.+..... ++..++|.++|+++......... .
T Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 308 (404)
T cd06370 230 VLGVDIEYYDRDSQDYYSLHRGFQSREYNRSDDEKALEAMKSVLIIVPTPV-SPDYDSFSIFVRKYNLEPPFNGDLGESE 308 (404)
T ss_pred EEEEchhhccccchhhhhhhhhhccccccccccHHHHHHhHheEEEecCCC-CchHHHHHHHHHHhccCCCCcccccccc
Confidence 9986621 11111000 0 0111112345555544333 67778999999887533211110 1
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceecccee-eEEEeCCCCccceeE
Q psy16206 285 RAETVKIEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTG-RINLDSQTGRRNSFS 363 (821)
Q Consensus 285 ~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG-~i~fd~~~g~~~~~~ 363 (821)
....++.+++++|||++++++|++++.+. .....++..|.++|++++|+|+|| ++.||+ +|+|. ..
T Consensus 309 ~~~~~~~~aa~~yDAv~~~a~Al~~~~~~-----------~~~~~~g~~i~~~l~~~~f~GvtG~~v~fd~-~G~~~-~~ 375 (404)
T cd06370 309 LVLEIDIEAAYLYDAVMLYAKALDETLLE-----------GGDIYNGTAIVSHILNRTYRSITGFDMYIDE-NGDAE-GN 375 (404)
T ss_pred cccccceeeehhHHHHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHhCcccccccCceEEEcC-CCCcc-cc
Confidence 22356788999999999999999998531 111367889999999999999999 999999 99985 88
Q ss_pred EEEEEEeecceEEEEEEecCCC
Q psy16206 364 LEFVEYVSDQWKVLGTWNTAFG 385 (821)
Q Consensus 364 ~~i~~~~~~~~~~vG~w~~~~g 385 (821)
|.+++++++.|-.-|......+
T Consensus 376 y~v~~~~~~~~~~~~~~~~~~~ 397 (404)
T cd06370 376 YSVLALQPIPPGDNGSTPCSYG 397 (404)
T ss_pred eEEEEeccccccCCCCCCCCcC
Confidence 9999998876554444433333
No 27
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=100.00 E-value=5.6e-38 Score=344.57 Aligned_cols=331 Identities=15% Similarity=0.141 Sum_probs=263.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-------------------CeEEEEcCC
Q psy16206 12 EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-------------------GIAAIFGPQ 72 (821)
Q Consensus 12 ~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-------------------~V~aiiGp~ 72 (821)
-+...|+.+|+|+||++++ ++|++|+++++| +|+++..+++++.+|+++ +|.|||||.
T Consensus 35 ~~~~~am~~AieeIN~~~~--Lpg~~L~~~i~D-t~~~~~~a~~~a~~li~~~~~~~~~~~~~c~~~~~~~~V~aVIG~~ 111 (403)
T cd06361 35 FLQTLAMIHAIEMINNSTL--LLGVTLGYEIYD-TCSEVTTAMAAVLRFLSKFNCSRSTVEFKCDYSQYVPRIKAVIGAG 111 (403)
T ss_pred HHHHHHHHHHHHHHhCCCC--CCCCEEceEEEe-CCCChHHHHHHHHHHHhhcccccccccccccCCCCCCCeEEEECCC
Confidence 3466799999999999985 899999999999 789999999999999873 899999999
Q ss_pred CcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHH-HH
Q psy16206 73 SIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYL-QQ 151 (821)
Q Consensus 73 ~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~-~~ 151 (821)
+|..+.+++++++.++||+|+++++.+.+++...+||+||+.|++..|++++++++++++|++|++|++++++.... +.
T Consensus 112 ~S~~s~ava~v~~~~~IP~IS~~ats~~Ls~~~~~~~ffRt~p~D~~qa~ai~~li~~~~w~~Vaii~~~d~yG~~~~~~ 191 (403)
T cd06361 112 YSEISMAVSRMLNLQLIPQVSYASTAEILSDKIRFPSFLRTVPSDFYQTKAMAHLIKKSGWNWVGIIITDDDYGRSALET 191 (403)
T ss_pred cchHHHHHHHHhccCCcceEecCcCCcccCCcccCCCeeECCCchHhHHHHHHHHHHHcCCcEEEEEEecCchHHHHHHH
Confidence 99999999999999999999998776655767788999999999999999999999999999999999988854444 44
Q ss_pred HHHhcCCCCCcCCCCCCeEEEE-EcCCCC-------CChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcce
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIR-QLPPDT-------DDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQ 223 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~-~~~~~~-------~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~ 223 (821)
+.+.+. ..|+++... .++++. .++..+++.++++++++||+.+...++..++++|+++|+ ++
T Consensus 192 f~~~~~-------~~GicIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVvv~~~~~~~~~l~~~a~~~g~---~~ 261 (403)
T cd06361 192 FIIQAE-------ANGVCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFLLFNKAIERNI---NK 261 (403)
T ss_pred HHHHHH-------HCCeEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEEEEeChHHHHHHHHHHHHhCC---Ce
Confidence 444444 557888654 465532 345566677888999999999999999999999999999 47
Q ss_pred EEEEecccccccccccCccc-ccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHH
Q psy16206 224 NYILSLTSYWINAHTVDFQD-FQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYL 302 (821)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~ 302 (821)
.|+.+++ |.... ..... ......+.+++.+... ..++|.+.|++++ ...+||||++
T Consensus 262 ~wigs~~--w~~~~-~~~~~~~~~~~~g~ig~~~~~~---~~~~F~~~~~~~~-----------------~~~v~~AVya 318 (403)
T cd06361 262 VWIASDN--WSTAK-KILTDPNVKKIGKVVGFTFKSG---NISSFHQFLKNLL-----------------IHSIQLAVFA 318 (403)
T ss_pred EEEEECc--ccCcc-ccccCCcccccceEEEEEecCC---ccchHHHHHHHhh-----------------HHHHHHHHHH
Confidence 9999885 43311 11111 1123457777766554 4455555555443 3457999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecc----eEEEE
Q psy16206 303 FAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQ----WKVLG 378 (821)
Q Consensus 303 ~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~----~~~vG 378 (821)
+|+||+++... ..|.... ..++.+++++|++++|+|++|.+.||+ +|+. ...|+|++++.++ +++||
T Consensus 319 iA~Al~~~~~~------~~c~~~~-~~~~~~l~~~L~~~~f~g~~~~v~Fd~-~gd~-~~~y~I~~~~~~~~~~~~~~vg 389 (403)
T cd06361 319 LAHAIRDLCQE------RQCQNPN-AFQPWELLGQLKNVTFEDGGNMYHFDA-NGDL-NLGYDVVLWKEDNGHMTVTIMA 389 (403)
T ss_pred HHHHHHHhccC------CCCCCCC-CcCHHHHHHHHheeEEecCCceEEECC-CCCC-CcceEEEEeEecCCcEEEEEEE
Confidence 99999997631 2464432 457889999999999999989999999 9987 4789999998754 79999
Q ss_pred EEecCCCcc
Q psy16206 379 TWNTAFGLN 387 (821)
Q Consensus 379 ~w~~~~gl~ 387 (821)
.|++.+.+.
T Consensus 390 ~~~~~~~~~ 398 (403)
T cd06361 390 EYDPQNDVF 398 (403)
T ss_pred EEeCCCCEE
Confidence 999987654
No 28
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=100.00 E-value=2e-38 Score=357.40 Aligned_cols=361 Identities=14% Similarity=0.180 Sum_probs=274.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh-------------------------c-Ce
Q psy16206 12 EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-------------------------E-GI 65 (821)
Q Consensus 12 ~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-------------------------~-~V 65 (821)
.+...|+.+|+|+||+++. ||||++|++.++| .|+++..|++.+.+++. + +|
T Consensus 41 ~~~~~Am~~Aie~IN~~~~-lLp~~~Lg~~i~D-tc~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 118 (472)
T cd06374 41 IQRVEAMFHTLDRINADPV-LLPNITLGCEIRD-SCWHSSVALEQSIEFIRDSLISIRDEKDGVNPDGQSPGPNKSKKPI 118 (472)
T ss_pred HHHHHHHHHHHHHHhCCcc-cCCCceeccEEEE-cCCCchHHHHHHHHHHhhcccccccccccccccCCCcccccCCCCe
Confidence 4466899999999999998 9999999999999 78999999999999885 2 89
Q ss_pred EEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc
Q psy16206 66 AAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN 145 (821)
Q Consensus 66 ~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~ 145 (821)
.|||||.+|..+.+++++++.+++|+|+++++...++++..+||+||+.|++..+++++++++++++|++|++|++++++
T Consensus 119 ~aiiGp~~S~~~~ava~~~~~~~iP~Is~~ats~~ls~~~~~p~~fRt~p~d~~~~~al~~l~~~~~W~~Vaii~~~~~y 198 (472)
T cd06374 119 VGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLFKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNY 198 (472)
T ss_pred EEEECCCcchHHHHHHHHhhhhcccccccccCchhhcccccCCceEEcCCChHHHHHHHHHHHHHCCCcEEEEEEecchH
Confidence 99999999999999999999999999999777555566678999999999999999999999999999999999999884
Q ss_pred -hhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcC--CCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 146 -LVYLQQVLENAHDDDKEIRPGRPSVTIR-QLP--PDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~--~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
....+.+.+.+. ..|+++... .++ +...|++++|++||+.+ +++|++.+....+..++++++++|+.
T Consensus 199 g~~~~~~~~~~~~-------~~gi~i~~~~~i~~~~~~~d~~~~l~~lk~~~~da~vvv~~~~~~~~~~~l~~a~~~g~~ 271 (472)
T cd06374 199 GESGMEAFKELAA-------HEGLCIAHSDKIYSNAGEQSFDRLLRKLRSRLPKARVVVCFCEGMTVRGLLMAMRRLGVG 271 (472)
T ss_pred HHHHHHHHHHHHH-------HCCeeEEEEEEecCCCchHHHHHHHHHHHhcCCCcEEEEEEechHHHHHHHHHHHHhcCC
Confidence 344444545554 557777643 343 34679999999999764 45566667778899999999999996
Q ss_pred CcceEEEEecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhh---------------hhhhhhcccc-ccc
Q psy16206 220 GDYQNYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNG---------------WIYEENERGR-SLN 283 (821)
Q Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~---------------~~~~~~~~~~-~~~ 283 (821)
..+.||.+++ |... ....+.......|.+++.+...+.+.+++|++. |+..+.-..+ .+.
T Consensus 272 -~~~~wi~s~~--~~~~-~~~~~~~~~~~~G~l~~~~~~~~~~~F~~~l~~l~~~~~~~~~~~~~~w~~~f~c~~~~~~~ 347 (472)
T cd06374 272 -GEFQLIGSDG--WADR-DDVVEGYEEEAEGGITIKLQSPEVPSFDDYYLKLRPETNTRNPWFREFWQHRFQCRLPGHPQ 347 (472)
T ss_pred -CceEEEEecc--cccc-hHhhhcchhhhheeEEEEecCCCCccHHHHHHhCCcccCCCChHHHHHHHHhcCCCcCCccC
Confidence 4578999884 3321 111122333457888887776666666665442 3333210000 000
Q ss_pred c---------ccc------ccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceecccee
Q psy16206 284 V---------RAE------TVKIEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTG 348 (821)
Q Consensus 284 ~---------~~~------~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG 348 (821)
. +.. ....+++++||||+++|+||+++..+........|.... +.++..|+++|++++|+|++|
T Consensus 348 ~~~~~~~~c~~~~~~~~~~~~~~~~~~vyDAVyaiA~ALh~~~~~~~~~~~~~c~~~~-~~~~~~l~~~l~~v~F~g~tG 426 (472)
T cd06374 348 ENPNYIKICTGNESLDEQYVQDSKMGFVINAIYAMAHGLHNMHQDLCPGHVGLCDAMK-PIDGRKLLEYLLKTSFSGVSG 426 (472)
T ss_pred cCCccCCCCCCcccccccccccceeHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCC-CCCHHHHHHHHHhCcccCCCC
Confidence 0 000 112456689999999999999987432222224576532 567899999999999999999
Q ss_pred -eEEEeCCCCccceeEEEEEEEee-----cceEEEEEEecCCCccee
Q psy16206 349 -RINLDSQTGRRNSFSLEFVEYVS-----DQWKVLGTWNTAFGLNHS 389 (821)
Q Consensus 349 -~i~fd~~~g~~~~~~~~i~~~~~-----~~~~~vG~w~~~~gl~~~ 389 (821)
+|.||+ +|++. ..|+|++++. .++++||.|++ .+|+++
T Consensus 427 ~~v~Fd~-~G~~~-~~ydI~n~~~~~~~~~~~~~VG~w~~-~~l~~~ 470 (472)
T cd06374 427 EEVYFDE-NGDSP-GRYDIMNLQYTEDLRFDYINVGSWHE-GDLGID 470 (472)
T ss_pred CeEEEcC-CCCCC-CceEEEEEEECCCCCEEEEEEEEEeC-Cccccc
Confidence 799999 99987 4899999995 24899999984 577764
No 29
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=100.00 E-value=4.5e-38 Score=353.92 Aligned_cols=367 Identities=13% Similarity=0.210 Sum_probs=271.5
Q ss_pred CcEEEEeCCC--c--------------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChh----HHHHHHHHH
Q psy16206 1 MKIVGIFGPN--E--------------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSL----HTAKLMCNA 60 (821)
Q Consensus 1 i~IG~i~~~~--~--------------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~----~a~~~a~~l 60 (821)
|.||++||.. + .+...|+++|+|+||++++ +++|++|+++++| .|+++. +++..+.++
T Consensus 3 i~igglfp~h~~~~~~~~c~~~~~~~g~~~~~a~~~Aie~IN~~~~-iLpg~~L~~~i~D-~~~~~~~~~~~a~~~~~~l 80 (463)
T cd06376 3 ITLGGLFPVHARGPAGVPCGDIKKENGIHRLEAMLYALDQINSDPD-LLPNVTLGARILD-TCSRDTYALEQSLTFVQAL 80 (463)
T ss_pred eEEEEEEeeeeCCCCCCCccccccchhHHHHHHHHHHHHHhhCCCC-CCCCceEccEEEe-ccCCcHHHHHHHHHHHhhh
Confidence 5789999876 2 2357899999999999999 8999999999999 667654 444444444
Q ss_pred hh-------------------cCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHH
Q psy16206 61 TS-------------------EGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLIS 121 (821)
Q Consensus 61 i~-------------------~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~ 121 (821)
+. ++|.|||||.+|..+.+++++++.++||+|+++++...+++...++|+||+.|++..++
T Consensus 81 ~~~~~~~~~C~~~~~~~~~~~~~V~aviG~~~S~~t~ava~i~~~~~iP~Is~~ats~~ls~~~~~~~ffR~~p~d~~~~ 160 (463)
T cd06376 81 IQKDTSDVRCTNGEPPVFVKPEKVVGVIGASASSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQA 160 (463)
T ss_pred hhcccccCcCCCCCccccCCCCCeEEEECCCCchHHHHHHHHhccccCcccccccCChhhcccccCCceEEccCCHHHHH
Confidence 42 38999999999999999999999999999999766544455567899999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEEecCCc-hhHHHHHHHhcCCCCCcCCCC-CCeEEEE-E--cCCCCCChHHHHHHhhc-CCCc
Q psy16206 122 KGISVIINDMDWDTFTIIYETHDN-LVYLQQVLENAHDDDKEIRPG-RPSVTIR-Q--LPPDTDDYRPLLKEIKN-SSES 195 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~-g~~v~~~-~--~~~~~~d~~~~l~~lk~-~~~~ 195 (821)
+++++++++++|++|++|++++++ ...++.+.+... .. +.+|... . +.++..||+++|++||+ .+++
T Consensus 161 ~ai~~~i~~~~w~~Vaii~~~~~yg~~~~~~~~~~~~-------~~g~~~v~~~~~i~~~~~~~d~~~~l~~ik~~~~~~ 233 (463)
T cd06376 161 QAMVDIVKALGWNYVSTLASEGNYGESGVEAFTQISR-------EAGGVCIAQSIKIPREPRPGEFDKIIKRLLETPNAR 233 (463)
T ss_pred HHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHHHHHH-------HcCCceEEEEEecCCCCCHHHHHHHHHHHhccCCCe
Confidence 999999999999999999987764 444455554443 22 4566432 2 34446789999999987 6999
Q ss_pred EEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhh------
Q psy16206 196 HILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMN------ 269 (821)
Q Consensus 196 ~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~------ 269 (821)
+||+.+...++..++++|+++|+.+ .+.|+.+++ |. ..............|.+++.+...+.+.+++|.+
T Consensus 234 vIvl~~~~~~~~~ll~~a~~~~~~g-~~~wig~d~--~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~F~~~~~~l~~~~ 309 (463)
T cd06376 234 AVIIFANEDDIRRVLEAAKRANQVG-HFLWVGSDS--WG-AKISPILQQEDVAEGAITILPKRASIEGFDAYFTSRTLEN 309 (463)
T ss_pred EEEEecChHHHHHHHHHHHhcCCcC-ceEEEEecc--cc-ccccccccCcceeeeEEEEEeccccchhHHHHHHhCCccc
Confidence 9999999999999999999999875 489999884 22 2111111122234677777766666666666554
Q ss_pred ---------hhhhhhhccccc-cc---------ccccc--------cchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy16206 270 ---------GWIYEENERGRS-LN---------VRAET--------VKIEAALMYDAVYLFAAALQSLGERKPLPTPLSC 322 (821)
Q Consensus 270 ---------~~~~~~~~~~~~-~~---------~~~~~--------~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c 322 (821)
.|+..+.-.... .. .+... ....++++||||+++|+||+++.++....+...|
T Consensus 310 ~~~~~~~~~~w~~~f~c~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~v~dAVyaiA~ALh~l~~~~c~~~~~~C 389 (463)
T cd06376 310 NRRNVWFAEFWEENFNCKLTISGSKKEDTDRKCTGQERIGRDSTYEQEGKVQFVIDAVYAMAHALHSMHKDLCPGYTGVC 389 (463)
T ss_pred CCCCcHHHHHHHHhCCCcccCCCCccccccCcCcchhhccccCcccccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 343333100000 00 00111 1226789999999999999999743222223467
Q ss_pred CCCCCCCCchhHHHhhhhceecccee-eEEEeCCCCccceeEEEEEEEee-----cceEEEEEEecC
Q psy16206 323 ENPSSWQHGLGIGNLMKSITIDGMTG-RINLDSQTGRRNSFSLEFVEYVS-----DQWKVLGTWNTA 383 (821)
Q Consensus 323 ~~~~~~~~g~~l~~~l~~~~~~G~tG-~i~fd~~~g~~~~~~~~i~~~~~-----~~~~~vG~w~~~ 383 (821)
... .+.++..|+++|++++|+|++| +|.||+ +|++. ..|+|.+++. .++++||.|++.
T Consensus 390 ~~~-~~~~~~~l~~~L~~v~F~g~tg~~v~Fd~-~G~~~-~~Ydi~n~q~~~~~~~~~~~VG~w~~~ 453 (463)
T cd06376 390 PEM-EPADGKKLLKYIRAVNFNGSAGTPVMFNE-NGDAP-GRYDIFQYQITNTSSPGYRLIGQWTDE 453 (463)
T ss_pred ccC-CCCCHHHHHHHHHhCCccCCCCCeEEeCC-CCCCC-CceEEEEEEecCCCceeEEEEEEECCe
Confidence 653 3778999999999999999999 799999 99986 4788888873 348999999863
No 30
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=100.00 E-value=1.3e-37 Score=328.62 Aligned_cols=337 Identities=14% Similarity=0.202 Sum_probs=273.5
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHH-hhcCeEEEEcC-CCcchHH
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNA-TSEGIAAIFGP-QSIENRN 78 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~l-i~~~V~aiiGp-~~s~~~~ 78 (821)
|+||+||+.. ...+.||+.|++.+|.+.. ++.+.+|+.++...+..|++.+.+.+|++ +.+||.||||| .++..+.
T Consensus 19 i~iG~if~~~-~~~~~af~~Av~~~N~~~~-l~~~~~L~~~~~~~~~~dsf~~~~~vC~~ll~~GV~AIfg~p~s~~~~~ 96 (382)
T cd06377 19 VRLGALLVRA-PAPRDRVLAALARANRAPL-LPYNLSLEVVAAAAPSRDPASLLRSVCQTVVVQGVSALLAFPQTRPELV 96 (382)
T ss_pred eeeeEEecCC-chHHHHHHHHHHHhccccc-cccCceeEEeEEEcCCCChHHHHHHHHHhHhhCCeEEEEecCCCHHHHH
Confidence 6899999988 7889999999999999986 77889999999999989999999999999 59999999994 8778889
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCC
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHD 158 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~ 158 (821)
.+.++|+.++||+|+++..++...+.....+.+++.|+...++.|+.+++++|+|++|++||+.+++...++++++...
T Consensus 97 ~v~sic~~l~IP~I~~~~~~~~~~~~~~~~l~L~l~P~~~~l~~a~~~ll~~~~W~~f~~iy~~~~gl~~lq~l~~~~~- 175 (382)
T cd06377 97 QLDFVSAALEIPVVSIVRREFPRGSQNPFHLQMSWASPLSTLLDVLLSVLQRNGWEDVSLVLCRERDPTGLLLLWTNHA- 175 (382)
T ss_pred HHHHHhcCCCCCEEEecCCcccccCCCceeEEEEecCCHHHHHHHHHHHHHHCCCcEEEEEEecCcCHHHHHHHHHHhc-
Confidence 9999999999999999543321111223333457799999999999999999999999999999999999999999887
Q ss_pred CCCcCCCCC--CeEEEEEcCC---CCCCh-HHHHHHhhcCC-CcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 159 DDKEIRPGR--PSVTIRQLPP---DTDDY-RPLLKEIKNSS-ESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 159 ~~~~~~~~g--~~v~~~~~~~---~~~d~-~~~l~~lk~~~-~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
... ..+.+.+.++ +..++ ++.|++|++.. .++|++.|+.+.+..+|+++.+ .|+||++++
T Consensus 176 ------~~~~~~~i~v~~~~~~~~d~~~~~~~~L~~i~~~~~~~~ill~cs~e~~~~il~~~~~------~y~wIv~~~- 242 (382)
T cd06377 176 ------RFHLGSVLNLSRNDPSTADLLDFLRAQLELLKDPPGPAVVLFGCDVARARRVLELTPP------GPHWILGDP- 242 (382)
T ss_pred ------ccccCceEEEEeccCccCChhHHHHHHHHHhhcccCceEEEEECCHHHHHHHHHhhcc------ceEEEEcCC-
Confidence 333 4566666653 34556 99999999999 9999999999999999988765 399999762
Q ss_pred ccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhh
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLG 311 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~ 311 (821)
. +++++.....+++-+ .|++.. .....++.||||+++|+|++.+.
T Consensus 243 --~-----~le~~~~~g~nigLl---------------~~~~~~-------------~~~l~ali~DAV~lvA~a~~~l~ 287 (382)
T cd06377 243 --L-----PPEALRTEGLPPGLL---------------AHGETT-------------QPPLEAYVQDALELVARAVGSAT 287 (382)
T ss_pred --c-----ChhhccCCCCCceEE---------------EEeecc-------------cccHHHHHHHHHHHHHHHHHHhh
Confidence 2 344454444444422 121110 01227899999999999999874
Q ss_pred ---ccCCC-CCCCCCCCC--C-CCCCchhHHHhhhhceeccceeeEEEeCCCCcc--ceeEEEEEEEe--ecc---eEEE
Q psy16206 312 ---ERKPL-PTPLSCENP--S-SWQHGLGIGNLMKSITIDGMTGRINLDSQTGRR--NSFSLEFVEYV--SDQ---WKVL 377 (821)
Q Consensus 312 ---~~~~~-~~~~~c~~~--~-~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~--~~~~~~i~~~~--~~~---~~~v 377 (821)
....+ ++.++|.+. + .|.+|..+.++|++++|+|+||+|.|+ .|.| .++.++|++++ ..| |++|
T Consensus 288 ~~~~~~~l~~~~~~C~~~~~~~~W~~G~~l~~~Lknv~~eGlTG~I~F~--~g~R~~~~~~l~I~~L~~~~~G~~~W~kV 365 (382)
T cd06377 288 LVQPELALIPATVNCMDLPTKGNESSGQYLARFLANTSFDGRTGPVWVT--GSSQVHSSRHFKVWSLRRDPVGQPTWTTV 365 (382)
T ss_pred hcccccccCCCCCCcccCCCCCCCCchHHHHHHHHhCcccccceeEEEc--cCeeecccceEEEEEeccccCCCccceEE
Confidence 33556 778999764 6 899999999999999999999999995 6888 89999999998 545 5999
Q ss_pred EEEecCCCcceec
Q psy16206 378 GTWNTAFGLNHSR 390 (821)
Q Consensus 378 G~w~~~~gl~~~~ 390 (821)
|.|++...+.+.+
T Consensus 366 G~W~~~~~~~~~~ 378 (382)
T cd06377 366 GSWQGGRKIVMDQ 378 (382)
T ss_pred EEecCCCceeccc
Confidence 9999986666554
No 31
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=100.00 E-value=1.2e-37 Score=344.26 Aligned_cols=356 Identities=15% Similarity=0.223 Sum_probs=268.3
Q ss_pred cEEEEeCCCc-------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCC----hhHHHHHHHHH-hhcCeEEEE
Q psy16206 2 KIVGIFGPNE-------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYD----SLHTAKLMCNA-TSEGIAAIF 69 (821)
Q Consensus 2 ~IG~i~~~~~-------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~----~~~a~~~a~~l-i~~~V~aii 69 (821)
+||+++|.+. ..+..|+++|+|+||++++ +++|++|++.++|++ ++ +..+...+..+ +.++|.|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~a~~lAieeiN~~g~-il~g~~l~~~~~D~~-~~~~~~~~~~~~~~~~~~~~~~v~avi 78 (399)
T cd06384 1 TLAVVLPDNNLKYAWAWPRVGPAIRMAVERIQNKGK-LLRGYTITLLNKSSE-LNGGCSESLAPLHAVDLKLYSDPDVFF 78 (399)
T ss_pred CeEEECCCCCCCCeeehhhhHHHHHHHHHHHhccCC-cCCCceEEEEEeccC-CccccchhhhHHHHHHHHhhcCCCEEE
Confidence 5899998665 6788999999999999998 778999999999954 33 33333333322 335899999
Q ss_pred cCCCcchHHHHHHHhccCCCceeeeccCCCCCCCC-CCCccEEEEecChhhHHHHHHHHHHhCCCC-EEEEEEecCC---
Q psy16206 70 GPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIP-TNGVHGVNVYPESHLISKGISVIINDMDWD-TFTIIYETHD--- 144 (821)
Q Consensus 70 Gp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~-~~~~~~~r~~p~~~~~~~al~~~~~~~~w~-~v~ii~~~~~--- 144 (821)
||.||..+.+++++++.++||+|+++++.+.+++. ..++|+||+.|++..++.++..++++++|+ ++++||+++.
T Consensus 79 Gp~~S~~~~av~~i~~~~~iP~Is~~at~~~ls~~~~~y~~~fR~~p~~~~~~~~~~~i~~~~~w~~~vaiiy~~~~~~~ 158 (399)
T cd06384 79 GPGCVYPTASVARFATHWRLPLITAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFVNHLHEHFNWTSRAALLYLDLKTDD 158 (399)
T ss_pred CCCCchHHHHHHHHHhhcCCcEEeeccchhhhccccccCCceEEecCcHHHHHHHHHHHHHhCCCcEEEEEEEecCCccC
Confidence 99999999999999999999999997775433444 468889999999999999988899999999 6889987532
Q ss_pred -c-hhHHHHHHHhcCCCCCcCCCCCCeEEEEE-cCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 145 -N-LVYLQQVLENAHDDDKEIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 145 -~-~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+ ....+.+.+... ..|++|..+. +.++..|++++|+++|+ ++|+|+++++..++..+++||+++||..+
T Consensus 159 ~~~~~~~~~~~~~~~-------~~gi~v~~~~~~~~~~~d~~~~l~~ik~-~~~vIi~~~~~~~~~~i~~qa~~~g~~~~ 230 (399)
T cd06384 159 RPHYFISEGVFLALQ-------EENANVSAHPYHIEKNSDIIEIIQFIKQ-NGRIVYICGPLETFLEIMLQAQREGLTPG 230 (399)
T ss_pred CcceEehHHHHHHHH-------hcCceEEEEEEeccchhhHHHHHHHHhh-cccEEEEeCCchHHHHHHHHHHHcCCCCC
Confidence 1 112233333333 3356666554 45557899999999997 89999999999999999999999999999
Q ss_pred ceEEEEeccccccccccc-----C---------cccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhccccccccccc
Q psy16206 222 YQNYILSLTSYWINAHTV-----D---------FQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAE 287 (821)
Q Consensus 222 ~~~~i~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 287 (821)
.|+|+..+. ...... . .+....+..+++.+..+.+.++.+++|.++|++++...+ .....+.
T Consensus 231 ~y~~i~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~-~~~~~p~ 306 (399)
T cd06384 231 DYVFFYLDV---FGESLRVKSPRESYKQMNHSSWTVLKEAFKSVFVITYREPENPEYKEFQRELHARAKEDF-GVELEPS 306 (399)
T ss_pred cEEEEEehh---cccccccCCCCccccCCCCcccHHHHHHHhheEEeecCCCCCchHHHHHHHHHHHHhhhc-CCCcCcc
Confidence 999998772 111000 0 011111335666666666667889999999988643221 1000111
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEE-
Q psy16206 288 TVKIEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEF- 366 (821)
Q Consensus 288 ~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i- 366 (821)
..+++++++||||++++.|++++.+ ..+.|.+|.+++++|++.+|+|++|++.||+ +|+|. ..+.+
T Consensus 307 ~~~~~aa~~YDav~l~a~Al~~~~~-----------~~~~~~~g~~i~~~l~~~~f~GvtG~v~fd~-~G~r~-~~~~~~ 373 (399)
T cd06384 307 LMNFIAGCFYDGVMLYAMALNETLA-----------EGGSQKDGLNITRKMQDRRFWGVTGLVSIDK-NNDRD-IDFDLW 373 (399)
T ss_pred hHhhhhhhhHHHHHHHHHHHHHHHh-----------cCCCCCCcHhHHHHHhCceeecceeEEEECC-CCCcc-cceEEE
Confidence 2367899999999999999999852 1234678999999999999999999999999 99995 44555
Q ss_pred --EEEeecceEEEEEEecCC
Q psy16206 367 --VEYVSDQWKVLGTWNTAF 384 (821)
Q Consensus 367 --~~~~~~~~~~vG~w~~~~ 384 (821)
.++++++++.+|.|+..+
T Consensus 374 ~~~~~~~g~~~~v~~~~~~~ 393 (399)
T cd06384 374 AMTDHETGKYEVVAHYNGIT 393 (399)
T ss_pred EeecCCCCeEEEEEEEcCCC
Confidence 466889999999999854
No 32
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=100.00 E-value=7.4e-38 Score=338.16 Aligned_cols=335 Identities=16% Similarity=0.136 Sum_probs=265.4
Q ss_pred EeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEe------cCCChhHHHHHHHHHhhcCe--EEEEcCCCcchH
Q psy16206 6 IFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHV------ENYDSLHTAKLMCNATSEGI--AAIFGPQSIENR 77 (821)
Q Consensus 6 i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~------~~~~~~~a~~~a~~li~~~V--~aiiGp~~s~~~ 77 (821)
+.+..|++++.|+++|++++|++. +.+|.+.+.++ ++.|.+.+.+++|+++++|+ .|||||.++..+
T Consensus 6 ~~~~~~~~~~~A~~~Av~~~N~~~-----~~~l~~~~~~~~~~~~~~~~d~~~~~~~~C~~~~~gv~~~AIiGp~ss~~a 80 (368)
T cd06383 6 MTEDDNDVYKQIIDDALSYINRNI-----GTGLSVVHQQVETNAEVNRNDVKVALIEVCDKADSAIVPHLVLDTTTCGDA 80 (368)
T ss_pred ecccchHHHHHHHHHHHHHHhcCC-----CCceEEEEecccccccccCCcHHHHHHHHHHHHHccCCcEEEECCCcchhH
Confidence 445567889999999999999884 45778888887 88899999999999999988 899999999999
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchh-HHHHHHHhc
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLV-YLQQVLENA 156 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~-~~~~~~~~~ 156 (821)
..++++|+.++||+|+++..+.. ...+||++|+.|++..+++|+++++++|+|++|++||+++++.. .+++++++.
T Consensus 81 ~~V~si~~~~~IP~Is~s~~~~~---~~~~p~~ir~~Ps~~~~~~Ai~dlI~~f~W~~v~iIYddd~gl~~~l~~~l~~~ 157 (368)
T cd06383 81 SEIKSVTGALGIPTFSASYGQEG---DLEQPYLIQLMPPADDIVEAIRDIVSYYNITNAAILYDDDFVMDHKYKSLLQNW 157 (368)
T ss_pred HHHHHHHhccCCCEEEccCCCcC---cccCceEEEEeCChHHHHHHHHHHHHHCCCcEEEEEEEcCchhhHHHHHHHHhH
Confidence 99999999999999998554321 34789999999999999999999999999999999998888653 666666654
Q ss_pred CCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh-hHHHHHHHHHHHccccCcceEEEEeccccccc
Q psy16206 157 HDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM-DKTVTILKQAKEVHLMGDYQNYILSLTSYWIN 235 (821)
Q Consensus 157 ~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~-~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~ 235 (821)
. ...+.++. +....+++..|++|++.+.++||+.|.. +.+..++++|.++||++++|+||+++ ++
T Consensus 158 ~------~~~~~~v~----~~~~~~~~~~Lk~lk~~~~~rIIi~~s~~~~~~~il~qA~~lgm~~~~y~wilt~----ld 223 (368)
T cd06383 158 P------TRHVITII----NSIIDEVREQIKRLRNLDIKNIFILGSTEEIIRYVLDQALAEGFMGRKYAWFLGN----PD 223 (368)
T ss_pred H------hcCCEEEE----eccchhHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHcCCcCCceEEEEcC----CC
Confidence 3 02233332 1234679999999999998666666664 99999999999999999999999999 88
Q ss_pred ccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccC-
Q psy16206 236 AHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERK- 314 (821)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~- 314 (821)
....+++.+.+...+++++++....+...+++.++|.+.. .+..+..+..+.++++||||+++++|++.+..+.
T Consensus 224 ~~~~dl~~~~~~~~Nitgfrl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~aL~~Dav~~~~~a~~~l~~~~~ 298 (368)
T cd06383 224 LGIYDDLSCQLRNASIFVTRPMMDYQSSVRGALLRTDEPT-----LRPVFYFEWAFRLFLAYDAVLAVGEWPRRMRKKRV 298 (368)
T ss_pred chhhhhhhhccccCcEEEeeccccchhhhccceeeccCCc-----cCchhHHHHHHHHHHHHHHHHHhccccchhheeec
Confidence 8888888888888999999996555555588888773321 1222333466789999999999999999863211
Q ss_pred ---CC-CCCCCCCCCC---CC-CCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEE
Q psy16206 315 ---PL-PTPLSCENPS---SW-QHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVE 368 (821)
Q Consensus 315 ---~~-~~~~~c~~~~---~~-~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~ 368 (821)
+. .....|.+.. +| ..|..+.++|+.++|+|+||+|.||+ +|.|.++.+.+.+
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~w~~~g~~~~~~~k~~~~~gltG~i~f~~-~g~R~~~~l~~~~ 359 (368)
T cd06383 299 EDGSTGTSVLPGFGISPESPLMTLQSSPFNGSSEIKFEMLAGRVAIDE-GSSVSTKTIGSWS 359 (368)
T ss_pred cCCCcCccccCCCCCCcccchhhcccccccCccceeEeeecCeEEEec-CceeeeeeeeeEe
Confidence 01 1223554432 45 66669999999999999999999999 9999866554433
No 33
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=100.00 E-value=2.8e-37 Score=338.28 Aligned_cols=348 Identities=14% Similarity=0.147 Sum_probs=256.2
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~ 75 (821)
|||++.|++| ...+.|+++|+++||++++ +++|++|++++.| ++|++..++..+.++ .++|.|||||.||.
T Consensus 1 ~ig~~~p~sg~~~~~g~~~~~a~~lAie~iN~~g~-il~g~~l~~~~~d-~~~~~~~a~~~~~~~-~~~V~aviGp~~S~ 77 (382)
T cd06371 1 KVGVLGPWSCDPIFSKALPDVAARLAVSRINRDPS-LSLGYWFDYVLLP-EPCETSRALAAFLGY-EGYASAFVGPVNPG 77 (382)
T ss_pred CceEecCcccCchhhhhhHHHHHHHHHHHHhCCCC-CCCCceEEEEEec-CCCChhHHHHHHHcc-cCCceEEECCCCch
Confidence 7999999988 5578899999999999998 7789999999999 447766555333322 35999999999999
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc-hhHHHHHHH
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN-LVYLQQVLE 154 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~-~~~~~~~~~ 154 (821)
.+.+++++++.++||+|+++++.+.+++...+++++|+.|++ +.++++++++|+|++|++|++++++ ....+.+.+
T Consensus 78 ~~~a~a~va~~~~iP~Is~~a~~~~lt~~~~y~~f~r~~~~~---~~~~~~~~~~~~w~~vaii~~~~~~~~~~~~~l~~ 154 (382)
T cd06371 78 YCEAAALLAKEWDKALFSWGCVNYELDDVRSYPTFARTLPSP---SRVLFTVLRYFRWAHVAIVSSPQDIWVETAQKLAS 154 (382)
T ss_pred HHHHHHHHHHhcCceEEecccCchhhcCcccCCCceecCCCc---HHHHHHHHHHCCCeEEEEEEecccchHHHHHHHHH
Confidence 999999999999999999976654445556789999999986 5678899999999999999998873 333444444
Q ss_pred hcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCC-CcEEEEeCCh-----hHHHHHHHHHHHccccCcceEEEE
Q psy16206 155 NAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSS-ESHILLDCSM-----DKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~-~~~ivl~~~~-----~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
... ..|+++.. ..++.+..|++++|++||+.+ +|+||++++. .++..+++||+++||++.+|+|+.
T Consensus 155 ~l~-------~~gi~v~~~~~~~~~~~d~~~~L~~lk~~~~~~viv~~~~~~~~~~~~~~~i~~qa~~~Gm~~~~y~~i~ 227 (382)
T cd06371 155 ALR-------AHGLPVGLVTSMGPDEKGAREALKKVRSADRVRVVIMCMHSVLIGGEEQRLLLETALEMGMTDGRYVFIP 227 (382)
T ss_pred HHH-------HCCCcEEEEEEecCCHHHHHHHHHHHhcCCCcEEEEEEeeccccCcHHHHHHHHHHHHcCCcCCcEEEEE
Confidence 444 44677764 567777789999999999987 6999987765 677899999999999999999998
Q ss_pred ecccc-cc-----cccccCc-ccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHH
Q psy16206 228 SLTSY-WI-----NAHTVDF-QDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAV 300 (821)
Q Consensus 228 ~~~~~-~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv 300 (821)
+++.. .. ....... ........++..+.......+.++.|.++|+... . ........++.+++++|||+
T Consensus 228 ~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~--~~~~~~~~~~~~~~~~YDav 303 (382)
T cd06371 228 YDTLLYSLPYRNVSYPALRNNSKLRRAYDAVLTITMDSGEQSFYEAFRAAQERGE--I--PSDLEPEQVSPLFGTIYNSI 303 (382)
T ss_pred eccccccCCCCCccccCCCCCHHHHHHhHhhEEEEecCCCCcHHHHHHHHHhcCC--C--CCCCCccccchhHHHHHHHH
Confidence 87410 00 0000000 0111123455555444333334444444432110 0 00111123456667899999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEE
Q psy16206 301 YLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTW 380 (821)
Q Consensus 301 ~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w 380 (821)
+++++|++++++. +...++.+++++|++++|+|++|+++||+ +|++. ..|.++++.+.+++.+-.+
T Consensus 304 ~~~a~Al~~a~~~------------g~~~d~~~l~~~l~~~~f~GvtG~v~fd~-~g~~~-~~~~v~~~~~~~~~~~~~~ 369 (382)
T cd06371 304 YLLAHAVENARAA------------GGGVSGANLAQHTRNLEFQGFNQRLRTDS-GGGGQ-APYVVLDTDGKGDQLYPTY 369 (382)
T ss_pred HHHHHHHHHHHHh------------CCCccHHHHHHHHhCccccccceEEEecC-CCCcc-cceEEEecCCCCCeeeeeE
Confidence 9999999999731 12367899999999999999999999999 99885 9999999999776554443
No 34
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=100.00 E-value=1.2e-36 Score=339.79 Aligned_cols=364 Identities=14% Similarity=0.186 Sum_probs=280.1
Q ss_pred CcEEEEeCCC----------------chHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh--
Q psy16206 1 MKIVGIFGPN----------------EEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-- 62 (821)
Q Consensus 1 i~IG~i~~~~----------------~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-- 62 (821)
|.||++||.. |.+...|+.+|+|+||++++ +|+|++|.+.++| .|+++..+++.+.+++.
T Consensus 3 ~~igglFp~h~~~~~~~~C~~~~~~~g~~~~~Am~~AIe~IN~~~~-lLp~~~Lg~~i~D-tc~~~~~a~~~~~~~i~~~ 80 (458)
T cd06375 3 LVLGGLFPVHEKGEGTEECGRINEDRGIQRLEAMLFAIDRINNDPR-ILPGIKLGVHILD-TCSRDTYALEQSLEFVRAS 80 (458)
T ss_pred EEEEEEEEeeeCCCCCCCCcCccccchHHHHHHHHHHHHHHhCCCC-CCCCceeccEEEe-cCCCcHHHHHHHHHHHhhh
Confidence 4578888864 35678999999999999998 8999999999999 77999999999988772
Q ss_pred -----------------------cCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhh
Q psy16206 63 -----------------------EGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHL 119 (821)
Q Consensus 63 -----------------------~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~ 119 (821)
.+|.|||||.+|..+.+++++++.++||+|+++++.+.+++...+||+||+.|++..
T Consensus 81 ~~~~~~~~~~C~~~~~~~~~~~~~~V~aVIG~~~S~~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~~ 160 (458)
T cd06375 81 LTKVDTSEYECPDGSYAVQENSPLAIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFY 160 (458)
T ss_pred hhcccccccccccCCccccccCCCCeEEEEcCCCchHHHHHHHHhhhccccceeeccCChhhcccccCCCeEEecCCcHH
Confidence 289999999999999999999999999999997775554667778999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEEecCCc-hhHHHHHHHhcCCCCCcCCCCCCeEEE-EEcCC--CCCChHHHHHHhhc-CCC
Q psy16206 120 ISKGISVIINDMDWDTFTIIYETHDN-LVYLQQVLENAHDDDKEIRPGRPSVTI-RQLPP--DTDDYRPLLKEIKN-SSE 194 (821)
Q Consensus 120 ~~~al~~~~~~~~w~~v~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~v~~-~~~~~--~~~d~~~~l~~lk~-~~~ 194 (821)
++++++++++++||++|++||+++++ ...++.+.+.+. ..|+++.. ..++. +..|+.+.+++|++ .++
T Consensus 161 qa~ai~~ll~~~~W~~Vaii~~~~~yG~~~~~~~~~~~~-------~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a 233 (458)
T cd06375 161 QAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEAR-------LRNICIATSEKVGRSADRKSYDSVIRKLLQKPNA 233 (458)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeCchHHHHHHHHHHHHHH-------HCCeeEEEEEEecCCCCHHHHHHHHHHHhccCCC
Confidence 99999999999999999999998874 444455555554 55777764 34644 35789999999875 699
Q ss_pred cEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhh---
Q psy16206 195 SHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGW--- 271 (821)
Q Consensus 195 ~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--- 271 (821)
++||+.+...++..++++|.++|+. ..|+.+++ |.. .............|++++.+...+.+.+++|++..
T Consensus 234 ~vVvl~~~~~~~~~ll~~a~~~g~~---~~wigs~~--~~~-~~~~~~~~~~~~~G~i~~~~~~~~i~~f~~yl~~l~p~ 307 (458)
T cd06375 234 RVVVLFTRSEDARELLAAAKRLNAS---FTWVASDG--WGA-QESIVKGSEDVAEGAITIELASHPIPDFDRYFQSLTPE 307 (458)
T ss_pred EEEEEecChHHHHHHHHHHHHcCCc---EEEEEecc--ccc-cchhhhccchhhceEEEEEeccccchhHHHHHHhCCcC
Confidence 9999999999999999999999986 68998884 322 11111222334578999988887788887777653
Q ss_pred ------------hhhhhcc---------ccccccc-----ccccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q psy16206 272 ------------IYEENER---------GRSLNVR-----AETVKIEAALMYDAVYLFAAALQSLGERKPLPTPLSCENP 325 (821)
Q Consensus 272 ------------~~~~~~~---------~~~~~~~-----~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~ 325 (821)
++.++-. .|..... .-.....+.+.||||+++|+||+++..+..-..+..|...
T Consensus 308 ~~~~n~w~~e~w~~~f~c~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~v~~AVyA~AhaLh~~l~~~c~~~~~~c~~~ 387 (458)
T cd06375 308 TNTRNPWFKDFWEQKFQCSLQNRDCANTTTNDKERLLDKVNYEQESKIMFVVNAVYAMAHALHNMQRDLCPNTTKLCDAM 387 (458)
T ss_pred cCCCCcHHHHHHHHHcCCCCCCCCccCCCCCchhcccccCcccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 2222100 0100000 0012346778999999999999999853332222567653
Q ss_pred CCCCCchhHH-Hhhhhceec-----ccee-eEEEeCCCCccceeEEEEEEEee--cc----eEEEEEEec
Q psy16206 326 SSWQHGLGIG-NLMKSITID-----GMTG-RINLDSQTGRRNSFSLEFVEYVS--DQ----WKVLGTWNT 382 (821)
Q Consensus 326 ~~~~~g~~l~-~~l~~~~~~-----G~tG-~i~fd~~~g~~~~~~~~i~~~~~--~~----~~~vG~w~~ 382 (821)
. ..++.+++ .+|++++|. |.+| .+.||+ +|+.. ..|+|++++. ++ ++.||.|+.
T Consensus 388 ~-~~~~~~l~~~~L~~v~F~~~~~~~~~g~~v~Fd~-nGd~~-~~YdI~n~q~~~~~~~~~~~~VG~w~~ 454 (458)
T cd06375 388 K-PLDGKKLYKEYLLNVSFTAPFRPDLADSEVKFDS-QGDGL-GRYNIFNYQRTGNSYGYRYVGVGAWAN 454 (458)
T ss_pred C-CCCHHHHHHHHHHhccccccccCCCCCCeeEECC-CCCCC-cceEEEEEEEcCCCCcEEEEEEEEEec
Confidence 3 35677888 599999999 9988 799999 99975 6899999984 32 689999964
No 35
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=100.00 E-value=1.9e-36 Score=339.63 Aligned_cols=353 Identities=14% Similarity=0.128 Sum_probs=271.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh--------------cCeEEEEcCCCcchH
Q psy16206 12 EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS--------------EGIAAIFGPQSIENR 77 (821)
Q Consensus 12 ~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~--------------~~V~aiiGp~~s~~~ 77 (821)
.+...|+.+|+++||++.. +|+|++|.+.++| .|+++..+++.+.+++. .+|+|||||.+|..+
T Consensus 39 ~~~~~Am~~Ai~~IN~~~~-lLp~~~Lg~~i~d-tc~~~~~a~~~~~~~~~~~~~~~~~~~C~~~~~vvavIG~~~S~~s 116 (469)
T cd06365 39 YQHVLALLFAIEEINKNPH-LLPNISLGFHIYN-VLHSDRKALESSLMWLSGEGETIPNYSCRRQRKSVAVIGGPSWALS 116 (469)
T ss_pred hHHHHHHHHHHHHHhCCCC-CCCCceEEEEEEC-CCCccHHHHHHHHHHHhCCCcccCCccCCCCCceEEEEcCCccHHH
Confidence 4567799999999999998 9999999999999 67999999999999884 379999999999999
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC-chhHHHHHHHhc
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD-NLVYLQQVLENA 156 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~-~~~~~~~~~~~~ 156 (821)
.+++++++.++||+|+++++++.++++..+||+||+.|++..++.|+++++++|+|++|++|+.+++ +...++.+.+.+
T Consensus 117 ~~va~i~~~~~IP~Is~~sts~~lsd~~~yp~ffRt~psd~~q~~ai~~li~~f~W~~Vaiv~~d~~yg~~~~~~~~~~~ 196 (469)
T cd06365 117 ATIATLLGLYKFPQLTYGPFDPLLSDRVQFPSLYQMAPKDTSLPLGMVSLMLHFSWTWVGLVISDDDRGEQFLSDLREEM 196 (469)
T ss_pred HHHHHHhhhhcccceeeccCCccccchhhCCcceEecCCchhHHHHHHHHHHhcCCeEEEEEEecChhHHHHHHHHHHHH
Confidence 9999999999999999977655557677889999999999999999999999999999999998887 455555555555
Q ss_pred CCCCCcCCCCCCeEEEE-EcCCCC----CChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 157 HDDDKEIRPGRPSVTIR-QLPPDT----DDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 157 ~~~~~~~~~~g~~v~~~-~~~~~~----~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
. ..|++|... .++... .++...|++|+++++|+||+.+...++..++.++.+.+. .++.|+.+++
T Consensus 197 ~-------~~gi~I~~~~~i~~~~~~~~~~~~~~l~~i~~~~arvIvl~~~~~~~~~l~~~~~~~~~--~~~~wi~s~~- 266 (469)
T cd06365 197 Q-------RNGICLAFVEKIPVNMQLYLTRAEKYYNQIMTSSAKVIIIYGDTDSLLEVSFRLWQYLL--IGKVWITTSQ- 266 (469)
T ss_pred H-------HCCeEEEEEEEecCCchhhHHHHHHHHHHhhcCCCeEEEEEcCcHHHHHHHHHHHHhcc--CceEEEeecc-
Confidence 5 567888754 465543 268899999999999999999998888666555555444 3478998874
Q ss_pred ccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhh---------------hhh-c---c------cccccccc
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIY---------------EEN-E---R------GRSLNVRA 286 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~---------------~~~-~---~------~~~~~~~~ 286 (821)
|. ..............|++++.+...+.+.+++|.++..- .+. . . .|......
T Consensus 267 -w~-~~~~~~~~~~~~~~G~lg~~~~~~~~~~f~~fl~~l~~~~~~~npw~~efwe~~f~c~~~~~~~~~~~~c~~~~~~ 344 (469)
T cd06365 267 -WD-VTTSPKDFTLNSFHGTLIFSHHHSEIPGFKDFLQTVNPSKYPEDIFLEKLWWIYFNCSLSKSSCKTLKNCLSNASL 344 (469)
T ss_pred -cc-ccccccccccceeeEEEEEEeccCcCcchHHHhhccCcccCCCccHHHhhHhHhcCcccCcCCccccCCCCCCccc
Confidence 32 22212223334568999999888888888888876432 111 0 0 01100000
Q ss_pred ---------cccchhHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCCCCCCCCCchhHHHhhhhceecccee-eEEEeCC
Q psy16206 287 ---------ETVKIEAALMYDAVYLFAAALQSLGERKPL-PTPLSCENPSSWQHGLGIGNLMKSITIDGMTG-RINLDSQ 355 (821)
Q Consensus 287 ---------~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~-~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG-~i~fd~~ 355 (821)
......+...||||+++|+||+++..+... .+..+|.. ...++.+++++|++++|.|.+| .+.||+
T Consensus 345 ~~~~~~~~~~~~~~~~~~v~dAVya~AhALh~~l~c~~~~~~~~~~~~--~~~~~~~l~~~l~~v~F~~~~g~~v~Fd~- 421 (469)
T cd06365 345 EWLPLHYFDMAMSEESYNVYNAVYAVAHALHEMLLQQVETQSENNGKR--LIFLPWQLHSFLKNIQFKNPAGDEVNLNQ- 421 (469)
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCC--CCccHHHHHHHHHhccccCCCCCEEEecC-
Confidence 012345678999999999999999865333 33344433 2456778999999999999998 699999
Q ss_pred CCccceeEEEEEEEee--cc---eEEEEEEec
Q psy16206 356 TGRRNSFSLEFVEYVS--DQ---WKVLGTWNT 382 (821)
Q Consensus 356 ~g~~~~~~~~i~~~~~--~~---~~~vG~w~~ 382 (821)
+|++. ..|+|++++. ++ +++||.|++
T Consensus 422 nGd~~-~~YdI~n~q~~~~~~~~~~~VG~~~~ 452 (469)
T cd06365 422 KRKLD-TEYDILNYWNFPQGLGLKVKVGEFSP 452 (469)
T ss_pred CCCcC-ceeeEEEEEECCCCCEEEEEEEEEeC
Confidence 99985 6899999973 22 799999986
No 36
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=100.00 E-value=6e-36 Score=337.58 Aligned_cols=355 Identities=15% Similarity=0.172 Sum_probs=271.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-C------------------eEEEEcCC
Q psy16206 12 EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-G------------------IAAIFGPQ 72 (821)
Q Consensus 12 ~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~------------------V~aiiGp~ 72 (821)
.+...|+++|+|+||++++ +|++++|++.++| +|+++..+++.+.+|+.+ + |.|||||.
T Consensus 49 ~~~~~am~~AieeIN~~~~-lLp~i~Lg~~i~D-tc~~~~~a~~~a~~li~~~~~~~~~~~~~c~~~~~~~~v~aVIG~~ 126 (510)
T cd06364 49 FRWLQAMIFAIEEINNSPT-LLPNITLGYRIFD-TCNTVSKALEATLSFVAQNKIDSLNLDEFCNCSEHIPSTIAVVGAT 126 (510)
T ss_pred HHHHHHHHHHHHHHhCCCc-cCCCCEEeEEEEc-cCCchHHHHHHHHHHHhcccccccccccccccCCCCCceEEEECCC
Confidence 4567999999999999999 9999999999999 689999999999999865 3 46999999
Q ss_pred CcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc-hhHHHH
Q psy16206 73 SIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN-LVYLQQ 151 (821)
Q Consensus 73 ~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~-~~~~~~ 151 (821)
+|..+.+++++++.++||+|++++++..++++..+||+||+.|++..+++++++++++++|++|++|+.++++ ...++.
T Consensus 127 sS~~s~ava~~~~~~~IP~IS~~sss~~ls~~~~yp~ffRt~psd~~q~~Ai~~l~~~f~wk~VaiI~~dd~yG~~~~~~ 206 (510)
T cd06364 127 GSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEK 206 (510)
T ss_pred chhHHHHHHHHhccccccccccccCCcccCCccccCCeeEcCCChHHHHHHHHHHHHHcCCeEEEEEEecCcchHHHHHH
Confidence 9999999999999999999999777555566678899999999999999999999999999999999998874 444444
Q ss_pred HHHhcCCCCCcCCCCCCeEEEE-EcCC--CCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEe
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIR-QLPP--DTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILS 228 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~-~~~~--~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~ 228 (821)
+.+.+. ..|+++... .++. ...|+.+++++|+++++++||+.+...++..+++||.++|+.+ ..|+.+
T Consensus 207 ~~~~~~-------~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~~a~vVvl~~~~~~~~~ll~qa~~~g~~~--~iwI~s 277 (510)
T cd06364 207 FREEAE-------ERDICIDFSELISQYSDEEEIQRVVEVIQNSTAKVIVVFSSGPDLEPLIKEIVRRNITG--KIWLAS 277 (510)
T ss_pred HHHHHH-------HCCcEEEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEeCcHHHHHHHHHHHHhCCCC--cEEEEE
Confidence 545554 567888644 3443 3678999999999999999999999999999999999999975 589887
Q ss_pred cccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhh---------------hhhhh----c---c--------
Q psy16206 229 LTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGW---------------IYEEN----E---R-------- 278 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---------------~~~~~----~---~-------- 278 (821)
++ |................|.+|+.+...+.+.+++|++.. ++.++ . .
T Consensus 278 ~~--w~~~~~~~~~~~~~~~gg~lg~~~~~~~i~~f~~~l~~l~p~~~~~~~~~~~~we~~f~c~~~~~~~~~~~~~~~~ 355 (510)
T cd06364 278 EA--WASSSLIAMPEYFDVMGGTIGFALKAGQIPGFREFLQKVHPKKSSHNGFAKEFWEETFNCYLEDSPKNALPVDTFL 355 (510)
T ss_pred ch--hhcccccccCCccceeeEEEEEEECCCcCccHHHHHHhCCcccCCCChHHHHHHHHhcCCCCCCCccccccccccc
Confidence 74 332222211222234567778777666666555555442 33332 0 0
Q ss_pred ------------------ccccccccc---------ccchhHHHHHHHHHHHHHHHHHhhccCCC---CCCCCCCCCCCC
Q psy16206 279 ------------------GRSLNVRAE---------TVKIEAALMYDAVYLFAAALQSLGERKPL---PTPLSCENPSSW 328 (821)
Q Consensus 279 ------------------~~~~~~~~~---------~~~~~a~~~YDAv~~~a~Al~~~~~~~~~---~~~~~c~~~~~~ 328 (821)
.|....... ....++...||||+++|+||+++..+... ..+..|.... .
T Consensus 356 ~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~AVyAvAhaLh~~~~c~~~~~~~~~~~c~~~~-~ 434 (510)
T cd06364 356 GHEESGDDSENGSTAFRPLCTGDENIASVETPYLDYTHLRISYNVYLAVYSIAHALQDIYTCTPGKGLFTNGSCADIK-K 434 (510)
T ss_pred ccccccccccccccccCCCCCChhhhcccCCccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCCCCCC-C
Confidence 011000000 01234677999999999999999854322 2235686632 3
Q ss_pred CCchhHHHhhhhceecccee-eEEEeCCCCccceeEEEEEEEee---cc---eEEEEEEec
Q psy16206 329 QHGLGIGNLMKSITIDGMTG-RINLDSQTGRRNSFSLEFVEYVS---DQ---WKVLGTWNT 382 (821)
Q Consensus 329 ~~g~~l~~~l~~~~~~G~tG-~i~fd~~~g~~~~~~~~i~~~~~---~~---~~~vG~w~~ 382 (821)
.++.+++++|++++|.|.+| .+.||+ +|+.. ..|+|++++. ++ +++||.|++
T Consensus 435 ~~~~~l~~~L~~v~F~~~~g~~v~Fd~-~Gd~~-~~YdI~n~q~~~~~~~~~~v~VG~~~~ 493 (510)
T cd06364 435 VEAWQVLKHLRHLNFTDNMGEQVRFDE-GGDLV-GNYSIINWHLSPEDGSVVFKEVGYYNV 493 (510)
T ss_pred CCHHHHHHHHHhcEEecCCCCEEEEec-CCCCc-cceeEEEeeecCCCCcEEEEEEEEEcC
Confidence 46789999999999999987 899999 99975 6899999984 22 689999986
No 37
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=100.00 E-value=4.8e-36 Score=332.57 Aligned_cols=334 Identities=16% Similarity=0.201 Sum_probs=260.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh----------------cCeEEEEcCCCcc
Q psy16206 12 EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS----------------EGIAAIFGPQSIE 75 (821)
Q Consensus 12 ~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~----------------~~V~aiiGp~~s~ 75 (821)
.....|+++|+++||++++ +++|++|+++++| +|+ +..+++.+.+|+. ++|.|||||.+|.
T Consensus 42 ~~~~~a~~lAv~~IN~~gg-il~g~~l~~~~~D-~~~-~~~a~~~~~~li~~~~~~~~~~c~~~~~~~~V~aIiGp~~S~ 118 (410)
T cd06363 42 YRLFQAMRFAVEEINNSTS-LLPGVTLGYEIFD-HCS-DSANFPPTLSLLSVNGSRIEPQCNYTNYQPRVVAVIGPDSST 118 (410)
T ss_pred HHHHHHHHHHHHHHhCCCc-cCCCCeeceEEEe-cCC-cHHHHHHHHHHHhccCcccCcccccccCCCCeEEEECCCccH
Confidence 5568999999999999999 8889999999999 656 7779999999874 4999999999999
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhH-HHHHHH
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVY-LQQVLE 154 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~-~~~~~~ 154 (821)
.+.+++++++.+++|+|+++++++.+++...+||+||+.|++..++.++++++.+++|++|+++++++++... .+.+.+
T Consensus 119 ~~~av~~i~~~~~vp~is~~~~~~~lt~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~k~vaii~~~~~~g~~~~~~~~~ 198 (410)
T cd06363 119 LALTVAPLFSFFLIPQISYGASSEVLSNKELYPSFLRTVPSDKDQIEAMVQLLQEFGWNWVAFLGSDDEYGRDGLQLFSE 198 (410)
T ss_pred HHHHHHHHhcccccccccccccCccccccccCCCeeEecCCcHHHHHHHHHHHHHCCCcEEEEEEeCChhHHHHHHHHHH
Confidence 9999999999999999999776554455567889999999999999999999999999999999998875443 344444
Q ss_pred hcCCCCCcCCCCCCeEEEE-EcCC---CCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecc
Q psy16206 155 NAHDDDKEIRPGRPSVTIR-QLPP---DTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLT 230 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v~~~-~~~~---~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 230 (821)
... ..|+++... .++. +..|+.++|++|++.++|+|++.+.++++..+++||+++|+... .|+.+++
T Consensus 199 ~l~-------~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~~~~~~~~~il~qa~~~g~~~~--~~i~~~~ 269 (410)
T cd06363 199 LIA-------NTGICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVFASRQPAEAFFNSVIQQNLTGK--VWIASEA 269 (410)
T ss_pred HHH-------HCCeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHhcCCCCC--EEEEeCc
Confidence 444 446666543 4543 35789999999999999999999999999999999999999643 6777663
Q ss_pred ccccccccc-CcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy16206 231 SYWINAHTV-DFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQS 309 (821)
Q Consensus 231 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~ 309 (821)
|...... ..... ....+++++....++.+.+++|.++ +++.+||||+++++|+++
T Consensus 270 --~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~---------------------~~~~~YDaV~~~a~Al~~ 325 (410)
T cd06363 270 --WSLNDELPSLPGI-RNIGTVLGVAQQTVTIPGFSDFIYS---------------------FAFSVYAAVYAVAHALHN 325 (410)
T ss_pred --ccccccccCCccc-eeeccEEEEEeCCCCCccHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 2211111 11111 1223566666666667777777765 346799999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeec----ceEEEEEEecC-C
Q psy16206 310 LGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSD----QWKVLGTWNTA-F 384 (821)
Q Consensus 310 ~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~----~~~~vG~w~~~-~ 384 (821)
+.+.. ...|.. ..+.++..++++|++++|+|++|++.||+ +|++. ..+.|+++... ++++||.|++. .
T Consensus 326 a~~~~----~~~~~~-~~~~~~~~l~~~L~~~~~~g~~g~i~fd~-~G~~~-~~~~i~~~~~~~~~~~~~~vG~~~~~~~ 398 (410)
T cd06363 326 VLQCG----SGGCPK-RVPVYPWQLLEELKKVNFTLLGQTVRFDE-NGDPN-FGYDIVVWWWDNSSGTFEEVGSYSFYPI 398 (410)
T ss_pred HhCCC----CCCCCC-CCCCCHHHHHHHHhccEEecCCcEEEeCC-CCCCc-cceEEEEEEEcCCceeEEEEEEEECCCC
Confidence 86321 123432 12567788999999999999999999999 99864 57888888543 48999999983 3
Q ss_pred Ccce
Q psy16206 385 GLNH 388 (821)
Q Consensus 385 gl~~ 388 (821)
.|.+
T Consensus 399 ~l~~ 402 (410)
T cd06363 399 RLTI 402 (410)
T ss_pred EEEE
Confidence 4443
No 38
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=100.00 E-value=5.2e-36 Score=326.81 Aligned_cols=337 Identities=21% Similarity=0.373 Sum_probs=274.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceee
Q psy16206 14 VATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVE 93 (821)
Q Consensus 14 ~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is 93 (821)
++.|+++|+++||++++ ++++++|++.+.|+++++........|.+..++|.|||||.|+..+.+++.+++.++||+|+
T Consensus 2 ~~~a~~~Ai~~iN~~~~-~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~v~aviGp~~~~~~~~~~~~~~~~~ip~is 80 (348)
T PF01094_consen 2 VLAAVQLAIDEINNNPD-LLPNITLEVQVFDTCSDDSFALQAAICSLNKQGVVAVIGPSCSSSAEAVASLASEWNIPQIS 80 (348)
T ss_dssp HHHHHHHHHHHHHHSST-SSTTSEEEEEEEEETTTTHHHHHHHHHHHHHHTECEEEETSSHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHcCCC-CCCCeEEEEEEEeeccCCcccccchhhhccCCCcEEEECCCcccccchhheeecccccceee
Confidence 57899999999999998 89999999999995545666666666677667999999999999999999999999999999
Q ss_pred eccCCCCCCC-CCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc----hhHHHHHHHhcCCCCCcCCCCCC
Q psy16206 94 AFWDPNKYFI-PTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN----LVYLQQVLENAHDDDKEIRPGRP 168 (821)
Q Consensus 94 ~~~~~~~~~~-~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~ 168 (821)
++++...+++ ...+|+++|+.|++..+++++++++++|+|++|++|++++++ ...+++.+++.+ +.
T Consensus 81 ~~~~~~~ls~~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~v~vv~~~~~~~~~~~~~~~~~~~~~~---------~~ 151 (348)
T PF01094_consen 81 PGSTSPSLSDRKTRYPTFFRTVPSDSSQARALVDLLKHFGWTRVSVVYSDDDYGNSLADSFQDLLRERG---------GI 151 (348)
T ss_dssp SSGGSGGGGSTTTTTTTEEESSB-HHHHHHHHHHHHHHTTSSEEEEEEESSHHHHHHHHHHHHHHHHHT---------TC
T ss_pred ccccccccccchhhccccccccccHHHHHHHHHHhhhcCCCceeeeeccccccccccchhhhhhhcccc---------cc
Confidence 9777655577 788999999999999999999999999999999999999986 556666666654 34
Q ss_pred eEEE-EEcCCCCCChHHHHHHhhc--CCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccc--cCccc
Q psy16206 169 SVTI-RQLPPDTDDYRPLLKEIKN--SSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHT--VDFQD 243 (821)
Q Consensus 169 ~v~~-~~~~~~~~d~~~~l~~lk~--~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~--~~~~~ 243 (821)
++.. ...+....++...++.+++ .++++||+++....+..++++|.++||...+|+|++++ ..... .....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~rvvil~~~~~~~~~~l~~a~~~~~~~~~~~~i~~~----~~~~~~~~~~~~ 227 (348)
T PF01094_consen 152 CVAFISVVISSDSDAEELLKKLKEIKSGARVVILCSSPEDARQFLEAAYELGMTSGDYVWILTD----LDNSSFWQNNED 227 (348)
T ss_dssp EEEEEEEEETTTSHHHHHHHHHHHHTTTTSEEEEESBHHHHHHHHHHHHHTTTSSTTSEEEEET----TTTTTHTSTHCH
T ss_pred eecccccccccccchhhhhhhhhhccccceeeeeecccccccccccchhhhhccccceeEEeec----cccccccccccc
Confidence 5555 4445556778888888887 89999999999999999999999999999999999998 32222 33344
Q ss_pred ccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy16206 244 FQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKPLPTPLSCE 323 (821)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~ 323 (821)
......++++++...+..+.+++|.++|++..... ........+..+++++|||++++++|++++.+.... .+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~yDAv~~~a~al~~~~~~~~~----~~~ 301 (348)
T PF01094_consen 228 FREAFQGVLGFTPPPPSSPEFEDFMKKWKESNNQS--STSGSDQEPSPYAAYAYDAVYLLAHALNRALQDGGP----VTN 301 (348)
T ss_dssp HHCCHTTEEEEEESTTTSHHHHHHHHHHHTTTHTT--TTTTTTSSGCHHHHHHHHHHHHHHHHHHHHHHHHST----TTS
T ss_pred ccccccceeeeeeecccccchhhhhcccChhhccC--cccccccccceeeeeehhhhHHHHHHHHHHHHhccC----CCC
Confidence 55566899999998888999999999998764321 111223457889999999999999999999753111 001
Q ss_pred CCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe
Q psy16206 324 NPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV 370 (821)
Q Consensus 324 ~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~ 370 (821)
....|.+|..+.++|++++|+|++|++.||+.+|+|.+..|+|++++
T Consensus 302 ~~~~~~~g~~l~~~l~~~~f~G~tG~v~f~~~~G~~~~~~~~i~~~~ 348 (348)
T PF01094_consen 302 GRNPWQNGSQLLKYLRNVSFEGLTGRVSFDSNDGDRTNYDYDILNMQ 348 (348)
T ss_dssp SSGTSTTHHHHHHHHHTEEEEETTEEEEEETTTSBEESEEEEEEEE-
T ss_pred CccccccHHHHHHHHhheeeeCCCCCEEEeCCCCCcCCCEEEEEECC
Confidence 11568899999999999999999999999975678889999999864
No 39
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=100.00 E-value=2.9e-35 Score=318.17 Aligned_cols=319 Identities=32% Similarity=0.580 Sum_probs=272.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHh-hcCeEEEEcCCCcchHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNAT-SEGIAAIFGPQSIENRNII 80 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li-~~~V~aiiGp~~s~~~~~v 80 (821)
+||++++.+.+..+.|+++|++++|..++ ++++..+.+.+.+.+.+||..+++.+|+++ .++|.|||||.++..+.++
T Consensus 1 ~iG~i~~~~~~~~~~a~~~Ai~~iN~~~~-~~~~~~l~~~~~~~~~~d~~~~~~~~c~l~~~~~v~ai~G~~~s~~~~~v 79 (328)
T cd06351 1 NIGAIFDRDARKEELAFRAAIDALNTENL-NALPTKLSVEVVEVNTNDPFSLLRAVCDLLVSQGVAAIFGPTSSESASAV 79 (328)
T ss_pred CeeeecCCCcHHHHHHHHHHHHHhccCcc-ccCCeeEEEEEEEeCCCChHHHHHHHHHHHhccCcEEEECCCCHHHHHHH
Confidence 69999999888889999999999999988 667778888888866689999999999999 5699999999999999999
Q ss_pred HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCC
Q psy16206 81 ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDD 160 (821)
Q Consensus 81 ~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~ 160 (821)
+++|+.++||+|++++++...++...++|++|+.|++..+++++++++.+++|++|+++|+++++...++++++...
T Consensus 80 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~iiy~~~~~~~~l~~~~~~~~--- 156 (328)
T cd06351 80 QSICDALEIPHISISGGSEGLSDKEESSTTLQLYPSLEDLADALLDLLEYYNWTKFAIIYDSDEGLSRLQELLDESG--- 156 (328)
T ss_pred HHHhccCCCCeEEeecCcccccccccccceEEecCCHHHHHHHHHHHHHHcCCcEEEEEEeCchHHHHHHHHHHhhc---
Confidence 99999999999999776554344467899999999999999999999999999999999999999899999998887
Q ss_pred CcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh-hHHHHHHHHHHHccccCcceEEEEeccccccccccc
Q psy16206 161 KEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM-DKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTV 239 (821)
Q Consensus 161 ~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~-~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~ 239 (821)
..+..+....++++.+++++.++++++.+++.||+.|.. ..+..+++||.++||++.+|+|++++ .+....
T Consensus 157 ----~~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~vil~~~~~~~~~~~l~~a~~~gm~~~~~~~i~~~----~~~~~~ 228 (328)
T cd06351 157 ----IKGIQVTVRRLDLDDDNYRQLLKELKRSESRRIILDCSSEEEAKEILEQAVELGMMGYGYHWILTN----LDLSDI 228 (328)
T ss_pred ----ccCceEEEEEecCCchhHHHHHHHHhhcccceEEEECCcHHHHHHHHHHHHHhccccCCcEEEEec----CCcccc
Confidence 445667767777655589999999999998555555555 89999999999999999999999999 666655
Q ss_pred CcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy16206 240 DFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKPLPTP 319 (821)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~ 319 (821)
+.....+...|++++++..+.++..++|.++|.... +..+...+...++++||+++++
T Consensus 229 d~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~---------------- 286 (328)
T cd06351 229 DLEPFQYGPANITGFRLVDPDSPDVSQFLQRWLEES------PGVNLRAPIYDAALLYDAVLLL---------------- 286 (328)
T ss_pred chhhhccCCcceEEEEEeCCCchHHHHHHHhhhhcc------CCCCcCccchhhHhhhcEEEEE----------------
Confidence 566777778999999999999999999999993322 2223344566677777775432
Q ss_pred CCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe-ecceEEEEEEec
Q psy16206 320 LSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV-SDQWKVLGTWNT 382 (821)
Q Consensus 320 ~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~ 382 (821)
||++.|++ +|+|.++.++|+++. ..++++||.|++
T Consensus 287 ---------------------------tg~i~f~~-~g~r~~~~l~i~~l~~~~~~~~vg~W~~ 322 (328)
T cd06351 287 ---------------------------TGTVSFDE-DGVRSNFTLDIIELNRSRGWRKVGTWNG 322 (328)
T ss_pred ---------------------------EeeEEECC-CCcccceEEEEEEecCCCCceEEEEecC
Confidence 99999999 999999999999999 899999999994
No 40
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=100.00 E-value=2.8e-33 Score=301.49 Aligned_cols=313 Identities=15% Similarity=0.212 Sum_probs=242.1
Q ss_pred ceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEE-cCCCcc--hHHHHHHHhccCCCceeeeccCCC-CCCCCCCCcc
Q psy16206 35 DIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIF-GPQSIE--NRNIIESMCQMFDIPHVEAFWDPN-KYFIPTNGVH 109 (821)
Q Consensus 35 ~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aii-Gp~~s~--~~~~v~~i~~~~~iP~is~~~~~~-~~~~~~~~~~ 109 (821)
..+++.++...+..||...++.+|+|+.+ +|.|+| ||.++. .+..+..++++++||+|++++.++ .++++..++|
T Consensus 32 ~~~~~~~~~~~~~~d~~~~~~~vC~ll~~~~V~aiIfgp~~~~~~~a~~~s~~~~~~~vP~is~~~~s~~~ls~~~~~p~ 111 (362)
T cd06378 32 PLDVNVVTLLVNETDPKSILTQLCDLLSTTKVHGVVFEDDTDQEAVAQILDFISAQTFLPILGIHGGSSMIMAAKDSGST 111 (362)
T ss_pred CCCccceeeecCCCCHHHHHHHHHHHhcccceEEEEecCCCCccccchhhhhhhhceeccEEEecccccccccCCCCCce
Confidence 34677777777778999999999999988 799755 999987 445677777889999999965432 3345677999
Q ss_pred EEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEE-EEcCCC-CCChHHHHH
Q psy16206 110 GVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTI-RQLPPD-TDDYRPLLK 187 (821)
Q Consensus 110 ~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~~~~~~-~~d~~~~l~ 187 (821)
++|+.|++..|++|+++++++|+|++|++||+++++...+...++.... .. ..++.+.. ...+.. ..+....++
T Consensus 112 flr~~Psd~~q~~Ai~~Ii~~f~W~~v~iV~~~~~g~~~~~~~l~~~~~-~~---~~~~~i~~~~~~~~~~~~~~~~~l~ 187 (362)
T cd06378 112 FLQFGPSIEQQAAVMLKIMEEYDWHAFSVVTSRFPGYDDFVSAVRTTVD-NS---FVGWELQSVLTLDMSDDDGDARTQR 187 (362)
T ss_pred EEEeCCCHHHHHHHHHHHHHHCCCeEEEEEEEcCCCHHHHHHHHHHHHh-hc---ccceeEEEEEeeccCCCcchHHHHH
Confidence 9999999999999999999999999999999998766655554444420 00 11222321 122222 335889999
Q ss_pred HhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccccccccccc--CcccccCCceeeEEEEeecCCChhHH
Q psy16206 188 EIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTV--DFQDFQPGYANITTVRMINPTNPHIR 265 (821)
Q Consensus 188 ~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (821)
++++.++++||++|+.+.+..++++|.++||++.+|+||+++ .+.... ..+.+. .|+.+++.
T Consensus 188 ~lk~~~arViVl~~s~~~a~~if~~A~~~gm~g~~yvWI~t~----~~~~~~~~~~~~~~---~G~i~v~~--------- 251 (362)
T cd06378 188 QLKKLESQVILLYCSKEEAEYIFRAARSAGLTGPGYVWIVPS----LVLGNTDLGPSEFP---VGLISVSY--------- 251 (362)
T ss_pred HHHhcCCCEEEEECCHHHHHHHHHHHHHcCCcCCCeEEEecc----cccCCCccccccCC---cceEeecc---------
Confidence 999999999999999999999999999999999999999999 444432 223333 34555432
Q ss_pred HhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhcc-CCC-CCCCCCCC-CC-CCCCchhHHHhhhhc
Q psy16206 266 SIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGER-KPL-PTPLSCEN-PS-SWQHGLGIGNLMKSI 341 (821)
Q Consensus 266 ~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~-~~~-~~~~~c~~-~~-~~~~g~~l~~~l~~~ 341 (821)
++|+.. ..+..||||+++|+|++.+.++ ..+ ....+|.+ .. .|..|..|+++|+++
T Consensus 252 ---~~w~~~-----------------~~a~~~DaV~vva~Al~~l~~~~~~~~~~~~~C~~~~~~~~~~G~~l~~~l~~v 311 (362)
T cd06378 252 ---DGWRYS-----------------LRARVRDGVAIIATGASAMLRQHGFIPEAKGSCYGQAEKRDLPPNTLHRYMMNV 311 (362)
T ss_pred ---cccccc-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCchHHHHHHhhcc
Confidence 233211 2467899999999999988643 334 66789975 34 389999999999999
Q ss_pred eeccceeeEEEeCCCCccceeEEEEEEEee-cceEEEEEEecCCCcceecc
Q psy16206 342 TIDGMTGRINLDSQTGRRNSFSLEFVEYVS-DQWKVLGTWNTAFGLNHSRT 391 (821)
Q Consensus 342 ~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~-~~~~~vG~w~~~~gl~~~~~ 391 (821)
+|+|+ +++|++ +|+|.++.|+|+++.. .+|++||.|+ ..+|.+..+
T Consensus 312 ~~~G~--~i~F~~-~G~r~~~~ldIinl~~~~g~~kVG~W~-~~~L~~~~~ 358 (362)
T cd06378 312 TWEGR--DLSFTE-DGYLVNPKLVVISLNKERVWEEVGKWE-NGSLRLKYP 358 (362)
T ss_pred eECCC--ceeECC-CCeEccceEEEEEecCCCCceEEEEEc-CCeEEEecC
Confidence 99997 999999 9999999999999997 5899999999 678887654
No 41
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=100.00 E-value=2.2e-33 Score=304.09 Aligned_cols=323 Identities=14% Similarity=0.160 Sum_probs=261.7
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~ 75 (821)
|||++.|++| .....|+++|++++|++++ ++|++|++++.| +++++..+.+.+++|++++|.+|+||.++.
T Consensus 1 ~iG~~~p~sG~~~~~g~~~~~g~~~a~~~iN~~gg--i~g~~i~~~~~D-~~~~~~~~~~~~~~li~~~v~aiiG~~~s~ 77 (334)
T cd06342 1 KIGVAGPLTGPNAALGKDIKNGAQLAVEDINAKGG--GKGVKLELVVED-DQADPKQAVAVAQKLVDDGVVGVVGHLNSG 77 (334)
T ss_pred CeeEeccCCCcchhhcHHHHHHHHHHHHHHHhcCC--CCCeEEEEEEec-CCCChHHHHHHHHHHHhCCceEEECCCccH
Confidence 7999999999 6688999999999999987 789999999999 669999999999999999999999999999
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHH-HhCCCCEEEEEEecCCchhHHHHHHH
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVII-NDMDWDTFTIIYETHDNLVYLQQVLE 154 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~-~~~~w~~v~ii~~~~~~~~~~~~~~~ 154 (821)
.+.+++++++..+||+|+++++..... ...++++||+.|++..++.++++++ ++++|++|+++++++++.....+.++
T Consensus 78 ~~~~~~~~~~~~~ip~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~ 156 (334)
T cd06342 78 VTIPASPIYADAGIVMISPAATNPKLT-ERGYKNVFRVVARDDQQGPAAAKYAVETLKAKKVAIIDDKTAYGQGLADEFK 156 (334)
T ss_pred hHHHhHHHHHhCCCeEEecCCCCchhh-cCCCceEEeccCCcHHHHHHHHHHHHHhcCCCEEEEEeCCcchhhHHHHHHH
Confidence 999999999999999999876533322 3357899999999999999999986 46899999999998875444443333
Q ss_pred hcCCCCCcCCCCCCeEEEE-EcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccccc
Q psy16206 155 NAHDDDKEIRPGRPSVTIR-QLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYW 233 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v~~~-~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~ 233 (821)
... +..|.++... .++++..|+++.+++|++.++++|++.+...++..++++++++|+.. .|+..++ |
T Consensus 157 ~~~------~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~--~ 225 (334)
T cd06342 157 KAL------KAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGGYYPEAGPLVRQMRQLGLKA---PFMGGDG--L 225 (334)
T ss_pred HHH------HHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcCcchhHHHHHHHHHHcCCCC---cEEecCc--c
Confidence 322 0346666644 57777899999999999999999999999999999999999999842 4554431 1
Q ss_pred ccccccCccc-ccCCceeeEEEEeecC--CChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHh
Q psy16206 234 INAHTVDFQD-FQPGYANITTVRMINP--TNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSL 310 (821)
Q Consensus 234 ~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~ 310 (821)
.+ ..+.. ......|+.....+.+ .++..++|.++|+++++.. ++.++..+||+++++++|++++
T Consensus 226 ~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----------~~~~~~~~yda~~~~~~al~~~ 292 (334)
T cd06342 226 CD---PEFIKIAGDAAEGTYATFPGGPLEKMPAGKAFVARYKAKFGDP----------PGAYAPYAYDAANVLAEAIKKA 292 (334)
T ss_pred CC---HHHHHHhhHhhCCcEEEecCCCCCCChHHHHHHHHHHHHhCCC----------CchhHHHHHHHHHHHHHHHHHh
Confidence 11 11111 1112345554444332 4678899999999877432 4678899999999999999998
Q ss_pred hccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEE
Q psy16206 311 GERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEY 369 (821)
Q Consensus 311 ~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~ 369 (821)
+ +.++..++++|++.+|+|++|+++|++ +|++.++.++|+|+
T Consensus 293 ~----------------~~~~~~v~~~l~~~~~~g~~g~i~f~~-~g~~~~~~~~~~~~ 334 (334)
T cd06342 293 G----------------STDPAKVADALRKVDFDGVTGKISFDA-KGDLKGAAVTVYQV 334 (334)
T ss_pred C----------------CCCHHHHHHHHHhCCCCCcceeeEECC-CCCcccCcEEEEeC
Confidence 7 567889999999999999999999999 99999999999875
No 42
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=100.00 E-value=4.8e-33 Score=302.28 Aligned_cols=317 Identities=15% Similarity=0.105 Sum_probs=252.5
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||++.|++| +....|+++|++++|++++ +.|++|+++++| ++++|..+++.+++|+.+ +|.+||||.||
T Consensus 1 ~IG~~~~lsG~~a~~G~~~~~g~~~A~~~iN~~gg--i~g~~v~l~~~D-~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 77 (344)
T cd06345 1 KIGVLAPLSGGASTTGEAMWNGAELAAEEINAAGG--ILGRKVELVFED-TEGSPEDAVRAFERLVSQDKVDAVVGGYSS 77 (344)
T ss_pred CeeEEEecCCcccccCHHHHHHHHHHHHHHHHcCC--CCCceEEEEEec-CCCCHHHHHHHHHHHhccCCceEEECCcch
Confidence 7999999998 7789999999999999998 678899999999 669999999999999988 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCC---CCCCCccEEEEecChhhHHHHHHHHHHh-----CCCCEEEEEEecCCch
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYF---IPTNGVHGVNVYPESHLISKGISVIIND-----MDWDTFTIIYETHDNL 146 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~---~~~~~~~~~r~~p~~~~~~~al~~~~~~-----~~w~~v~ii~~~~~~~ 146 (821)
..+.+++++++.++||+|++++++..++ +...++|+||+.|++..++.+++.++.+ ++|++|+++++++.+.
T Consensus 78 ~~~~a~~~~~~~~~vp~i~~~~~~~~~t~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~~~~g 157 (344)
T cd06345 78 EVVLALQDVAAENKVPFIVTGAASPEITTADDYETYKYVFRAGPTNSSYAQSVADALKETLVDKHGFKTAAIVAEDAAWG 157 (344)
T ss_pred HHHHHHHHHHHHcCCcEEeccCCCCcccccccccCCceEEecCCCcHHHHHHHHHHHHHhhcccCCCceEEEEecCchhh
Confidence 9999999999999999999865544323 2457899999999999999999998876 8999999999998755
Q ss_pred hHHHHHHHhcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEE
Q psy16206 147 VYLQQVLENAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNY 225 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~ 225 (821)
..+...++... +..|.++.. ..++.+..||++++.+|++.++++|++.+.+.++..+++++.++|+..+ +
T Consensus 158 ~~~~~~~~~~~------~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~ 228 (344)
T cd06345 158 KGIDAGIKALL------PEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGFSGNVGVLFTQQWAEQKVPIP---T 228 (344)
T ss_pred hHHHHHHHHHH------HHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEeecCchHHHHHHHHHHcCCCCc---e
Confidence 44444443332 133566654 5677778899999999999999999999999999999999999998532 2
Q ss_pred EEecccccccccccCcccccCCceeeEEEEeec----CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHH
Q psy16206 226 ILSLTSYWINAHTVDFQDFQPGYANITTVRMIN----PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVY 301 (821)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~ 301 (821)
+..+. ......-.........+......+. ..++..++|.++|+++++.. |+.+++.+||+++
T Consensus 229 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~g~~----------p~~~~~~~yda~~ 295 (344)
T cd06345 229 IGISV---EGNSPAFWKATNGAGNYVITAESGAPGVEAITDKTVPFTEAYEAKFGGP----------PNYMGASTYDSIY 295 (344)
T ss_pred EEecC---CcCCHHHHHhhchhcceEEeecccccCccCCCHHHHHHHHHHHHHhCCC----------CcccchHHHHHHH
Confidence 22220 0000000111111223333322221 35778899999999888432 6788899999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccc
Q psy16206 302 LFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRN 360 (821)
Q Consensus 302 ~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~ 360 (821)
++++|+++++ +.+++.+.++|++.+|+|++|+++||+ +|++.
T Consensus 296 ~l~~A~~~ag----------------~~~~~~i~~al~~~~~~g~~G~i~f~~-~g~~~ 337 (344)
T cd06345 296 ILAEAIERAG----------------STDGDALVEALEKTDFVGTAGRIQFYG-DDSAF 337 (344)
T ss_pred HHHHHHHHhc----------------CCCHHHHHHHHHhCCCcCCceeEEECC-CCCcC
Confidence 9999999998 567889999999999999999999999 99886
No 43
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=100.00 E-value=1.3e-32 Score=299.87 Aligned_cols=329 Identities=13% Similarity=0.125 Sum_probs=261.1
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI 74 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s 74 (821)
||||++.|++| +...+++++|+++||+.+| +.|++|+++++| ++++|..+.+.+++|++++|.+||||.+|
T Consensus 26 I~IG~l~plSG~~a~~G~~~~~g~~~av~~iNa~GG--i~G~~ielv~~D-~~~~p~~a~~~~~~Li~~~V~~iiG~~~s 102 (369)
T PRK15404 26 IKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGG--IKGDKLEGVEYD-DACDPKQAVAVANKVVNDGIKYVIGHLCS 102 (369)
T ss_pred eEEEEeecCCCcchhcCHhHHHHHHHHHHHHHhcCC--CCCeEEEEEeec-CCCCHHHHHHHHHHHHhCCceEEEcCCCc
Confidence 79999999998 5689999999999999999 568899999999 66999999999999998899999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHH-hCCCCEEEEEEecCCchhHHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIN-DMDWDTFTIIYETHDNLVYLQQVL 153 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~-~~~w~~v~ii~~~~~~~~~~~~~~ 153 (821)
..+.+++++++..++|+|++.++++.+++ ..++|+||+.|.+..+++++++++. +++|++++++++++.+.+...+.+
T Consensus 103 ~~~~a~~~~~~~~~ip~i~~~s~~~~l~~-~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~k~va~i~~d~~~g~~~~~~~ 181 (369)
T PRK15404 103 SSTQPASDIYEDEGILMITPAATAPELTA-RGYQLIFRTIGLDSDQGPTAAKYILEKVKPKRIAVLHDKQQYGEGLARSV 181 (369)
T ss_pred hhHHHhHHHHHHCCCeEEecCCCCHHHhc-CCCceEEeCCCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCchhHHHHHHH
Confidence 99999999999999999998655443232 4678999999999999999999764 569999999999987443332222
Q ss_pred -HhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 154 -ENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 154 -~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
+... ..|..+. ...++.+..||.+++.++++.++|+|++.....+...+++|++++|+.. .|+.+++
T Consensus 182 ~~~~~-------~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~~~~~~~~~~~~k~~~~~G~~~---~~i~~~~- 250 (369)
T PRK15404 182 KDGLK-------KAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQAREAGLKT---QFMGPEG- 250 (369)
T ss_pred HHHHH-------HcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHHCCCCC---eEEecCc-
Confidence 2222 3345655 4568888899999999999999999998888888889999999999853 3554431
Q ss_pred ccccccccCcccccCCceeeEEEEe-ecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHh
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRM-INPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSL 310 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~ 310 (821)
...... ........+|+..... ....++..++|.++|+++++. +++.++..+||++++++.|++++
T Consensus 251 --~~~~~~-~~~~~~~~~Gv~~~~~~~~~~~~~~~~f~~~~~~~~~~----------~~~~~~~~~Y~~~~~l~~Al~~a 317 (369)
T PRK15404 251 --VGNKSL-SNIAGPASEGMLVTLPKRYDQDPANKAIVDAFKAKKQD----------PSGPFVWTTYAAVQSLAAGINRA 317 (369)
T ss_pred --CCCHHH-HHhhhhhhcCcEEEccCCCccChhHHHHHHHHHHhcCC----------CCccchHHHHHHHHHHHHHHHhh
Confidence 211111 0111223355554332 233467789999999887522 24567789999999999999998
Q ss_pred hccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecce
Q psy16206 311 GERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQW 374 (821)
Q Consensus 311 ~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~ 374 (821)
+ ..+++.|.++|++.+|+|++|++.|++ +|++....|.|.++++++.
T Consensus 318 G----------------~~~~~~l~~al~~~~~~~~~G~~~~~~-~g~~~~~~~~i~~~~~~~~ 364 (369)
T PRK15404 318 G----------------SDDPAKVAKYLKANTFDTVIGPLSWDE-KGDLKGFEFGVFEWHADGT 364 (369)
T ss_pred C----------------CCCHHHHHHHHHhCCCCcceEeeEECC-CCCcccCCEEEEEEEcCCe
Confidence 8 357789999999999999999999999 9988888899999887754
No 44
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=100.00 E-value=1.5e-32 Score=298.81 Aligned_cols=323 Identities=15% Similarity=0.205 Sum_probs=255.1
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCC---CCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcC
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKAL---PPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGP 71 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~l---l~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp 71 (821)
|||+++|++| ..+..|+++|+++||++|| + ..|++|+++++| +++||..+++.+++|+++ +|.+||||
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~gg-i~~g~~g~~i~l~~~D-~~~~~~~a~~~~~~li~~~~v~aviG~ 78 (345)
T cd06338 1 RIGASLSLTGPLAGGGQLTQRGYELWVEDVNAAGG-IKGGGKGYPVELIYYD-DQSNPARAARAYERLITQDKVDFLLGP 78 (345)
T ss_pred CeeEEEeCCCccccccHHHHHHHHHHHHHHHhcCC-cccCCCCceEEEEEec-CCCCHHHHHHHHHHHHhhcCccEEecC
Confidence 7999999998 6678999999999999887 4 257899999999 669999999999999987 99999999
Q ss_pred CCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCC--CCEEEEEEecCCchhHH
Q psy16206 72 QSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMD--WDTFTIIYETHDNLVYL 149 (821)
Q Consensus 72 ~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~--w~~v~ii~~~~~~~~~~ 149 (821)
.++..+.+++++++.++||+|+++++...+. ...++|+||+.|++..++.++++++.+++ |+++++++.++++...+
T Consensus 79 ~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g~~~ 157 (345)
T cd06338 79 YSSGLTLAAAPVAEKYGVPMVAGSGASDSIF-AQGFKYVFGTLPPASQYAKSLLEMLVALDPRPKKVAILYADDPFSQDV 157 (345)
T ss_pred CcchhHHHHHHHHHHhCCcEEecCCCCchHh-hcCCceEEEecCchHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHH
Confidence 9999999999999999999999876543322 45679999999999999999999999987 99999999988754444
Q ss_pred HH-HHHhcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEE
Q psy16206 150 QQ-VLENAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 150 ~~-~~~~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
.+ +.+... ..|.+|.. ..++.+.+||++++++|++.++|+|++.+...++..+++++++.|+..+. .+.
T Consensus 158 ~~~~~~~~~-------~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~~-~~~- 228 (345)
T cd06338 158 AEGAREKAE-------AAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFPDAVLLVRQMKELGYNPKA-LYM- 228 (345)
T ss_pred HHHHHHHHH-------HcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcchhHHHHHHHHHHcCCCCCE-EEE-
Confidence 33 323333 34566654 46777778999999999999999999999999999999999999997542 222
Q ss_pred ecccccccccccCcccccCCceeeEEEEeecCC-------ChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHH
Q psy16206 228 SLTSYWINAHTVDFQDFQPGYANITTVRMINPT-------NPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAV 300 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv 300 (821)
+.+ .... ...........++++...+.+. .+..++|.++|+++++.. |..++..+||++
T Consensus 229 ~~~---~~~~-~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----------p~~~~~~~y~a~ 294 (345)
T cd06338 229 TVG---PAFP-AFVKALGADAEGVFGPTQWTPALDYKDDLFPSAAEFAAAYKEKYGKA----------PDYHAAGAYAAG 294 (345)
T ss_pred ecC---CCcH-HHHHHHhhhhCceeecceeccCcccccccCccHHHHHHHHHHHhCCC----------CCcccHHHHHHH
Confidence 221 1110 0111112223455554433322 477899999999988432 556788999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEE
Q psy16206 301 YLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVE 368 (821)
Q Consensus 301 ~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~ 368 (821)
+++++|+++++ ..+++.+.++|++.+|+|++|++.|++ +|++.. .+.+++
T Consensus 295 ~~~~~a~~~ag----------------~~~~~~v~~al~~~~~~~~~G~~~f~~-~~~~~~-~~~~~~ 344 (345)
T cd06338 295 QVLQEAVERAG----------------SLDPAAVRDALASNDFDTFYGPIKFDE-TGQNNH-PMTVVQ 344 (345)
T ss_pred HHHHHHHHHhC----------------CCCHHHHHHHHHhCCCcccccCeeECC-CCCcCC-Cceeee
Confidence 99999999988 457789999999999999999999999 888864 443443
No 45
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=100.00 E-value=2.2e-32 Score=292.51 Aligned_cols=295 Identities=14% Similarity=0.119 Sum_probs=236.4
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||++.|++| +...+|+++|+++||++++ +.|++|+++++| +++||..+.+++++|+.+ +|.+|+||.+|
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~gg--i~G~~iel~~~D-~~~~p~~a~~~a~~li~~~~v~~viG~~~s 77 (312)
T cd06346 1 KIGILLPLTGDLASYGPPMADAAELAVKEVNAAGG--VLGEPVTLVTAD-TQTDPAAGVAAATKLVNVDGVPGIVGAACS 77 (312)
T ss_pred CceeeccCCCchhhcChhHHHHHHHHHHHHHHhCC--CCCceEEEEECC-CCCCHHHHHHHHHHHHhhcCCCEEEccccc
Confidence 7999999998 5678999999999999999 578999999999 669999999999999987 99999999999
Q ss_pred chHHHH-HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHH
Q psy16206 75 ENRNII-ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVL 153 (821)
Q Consensus 75 ~~~~~v-~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~ 153 (821)
..+.++ ++++++.++|+|+++++...++....++|+||+.|++..++.++++++.+++|++++++++++++.....+.+
T Consensus 78 ~~~~a~~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~~~vail~~~~~~g~~~~~~~ 157 (312)
T cd06346 78 GVTIAALTSVAVPNGVVMISPSSTSPTLTTLDDNGLFFRTAPSDALQGQALAQLAAERGYKSVATTYINNDYGVGLADAF 157 (312)
T ss_pred hhhHhhhhhhhccCCcEEEecCCCCccceecCCCceEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEccCchhhHHHHHH
Confidence 999999 9999999999999876654434455678999999999999999999999999999999999887543333322
Q ss_pred -HhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 154 -ENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 154 -~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
+... ..|..+. ...++++.+||.+++++|++.++|+|++.+.+.++..+++|++++|+.. .|+.+++
T Consensus 158 ~~~~~-------~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~---~~~~~~~- 226 (312)
T cd06346 158 TKAFE-------ALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPETGSGILRSAYEQGLFD---KFLLTDG- 226 (312)
T ss_pred HHHHH-------HcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccchHHHHHHHHHHcCCCC---ceEeecc-
Confidence 2232 3356665 4568888999999999999999999999999999999999999999843 3565552
Q ss_pred ccccccccCcccc-cCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHh
Q psy16206 232 YWINAHTVDFQDF-QPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSL 310 (821)
Q Consensus 232 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~ 310 (821)
...... +... .....++.+..... +.+..++|.++|+++++.. |+.+++.+||+++++++|
T Consensus 227 --~~~~~~-~~~~~~~~~~g~~~~~~~~-~~~~~~~f~~~~~~~~g~~----------p~~~~~~~Yd~~~~l~~A---- 288 (312)
T cd06346 227 --MKSDSF-LPADGGYILAGSYGTSPGA-GGPGLEAFTSAYKAAYGES----------PSAFADQSYDAAALLALA---- 288 (312)
T ss_pred --ccChHH-HHhhhHHHhCCcEEccCCC-CchhHHHHHHHHHHHhCCC----------CCccchhhHHHHHHHHHH----
Confidence 111110 1111 11234555543332 3477899999999998433 677889999999999866
Q ss_pred hccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccce
Q psy16206 311 GERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNS 361 (821)
Q Consensus 311 ~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~ 361 (821)
|+|++|+++|++ +|++..
T Consensus 289 --------------------------------~~g~~g~~~f~~-~g~~~~ 306 (312)
T cd06346 289 --------------------------------YQGASGVVDFDE-NGDVAG 306 (312)
T ss_pred --------------------------------hCCCccceeeCC-CCCccc
Confidence 669999999999 998753
No 46
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=100.00 E-value=8.2e-32 Score=292.70 Aligned_cols=329 Identities=15% Similarity=0.186 Sum_probs=250.5
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||++.|+|| +..++|+++|+++||++|+ +.|++|+++++| ++++|..+.+++++|+.+ +|.+|+||.++
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~~a~~~iNa~gg--i~G~~v~lv~~D-~~~~p~~a~~~~~~li~~~~v~~iiG~~~s 77 (344)
T cd06348 1 PLGVALALTGNAALYGQEQLAGLKLAEDRFNQAGG--VNGRPIKLVIED-SGGDEAEAINAFQTLINKDRVLAIIGPTLS 77 (344)
T ss_pred CeeEEEeccCchhhcCHhHHHHHHHHHHHHhhcCC--cCCcEEEEEEec-CCCChHHHHHHHHHHhhhcCceEEECCCCc
Confidence 7999999999 6789999999999999999 567899999999 669999999999999988 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHH-HHHHHHHHhC-CCCEEEEEEecCC-chhHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLIS-KGISVIINDM-DWDTFTIIYETHD-NLVYLQQ 151 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~-~al~~~~~~~-~w~~v~ii~~~~~-~~~~~~~ 151 (821)
..+.++.++++..++|+|+++++... .+..++|+||+.|++..+. .++..++.++ +|++++++|.+++ +...+.+
T Consensus 78 ~~~~a~~~~~~~~~ip~i~~~~~~~~--~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~g~~~~~ 155 (344)
T cd06348 78 QQAFAADPIAERAGVPVVGPSNTAKG--IPEIGPYVFRVSAPEAVVAPAAIAAALKLNPGIKRVAVFYAQDDAFSVSETE 155 (344)
T ss_pred HHHHhhhHHHHhCCCCEEeccCCCCC--cCCCCCeEEEccCcHHHHHHHHHHHHHHHhcCCeEEEEEEeCCchHHHHHHH
Confidence 99999999999999999998655432 1446789999988766544 4555667777 9999999997655 4433333
Q ss_pred HHHhcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLT 230 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 230 (821)
.+++.. +..|..+.. ..++.+..||.+++.+|+++++++|++.+.+.++..+++++++.|+..+ ++..++
T Consensus 156 ~~~~~~------~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 226 (344)
T cd06348 156 IFQKAL------RDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISALAADGGNLVRQLRELGYNGL---IVGGNG 226 (344)
T ss_pred HHHHHH------HHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECCcchhHHHHHHHHHHcCCCCc---eecccc
Confidence 333222 033566654 5677778999999999999999999999999999999999999999642 333321
Q ss_pred cccccccccCcccccCCceeeEEEEee--cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHH
Q psy16206 231 SYWINAHTVDFQDFQPGYANITTVRMI--NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQ 308 (821)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~ 308 (821)
+.... -........+|+.....+ ..+++..++|.++|+++++. .++.++..+||+++++++|++
T Consensus 227 ---~~~~~-~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~----------~p~~~~~~~yda~~~~~~A~~ 292 (344)
T cd06348 227 ---FNTPN-VFPVCQAACDGVLVAQAYSPENDTPVNRDFVEAYKKKYGK----------APPQFSAQAFDAVQVVAEALK 292 (344)
T ss_pred ---ccCHH-HHHhhhHhhcCeEEEeeccCCCCCHHHHHHHHHHHHHHCC----------CccHHHHHHHHHHHHHHHHHH
Confidence 11111 011122233566554443 33457789999999988743 256778899999999999999
Q ss_pred HhhccCCC-CCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEE
Q psy16206 309 SLGERKPL-PTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEF 366 (821)
Q Consensus 309 ~~~~~~~~-~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i 366 (821)
+++...+. ..+. ...+..+.++|++.+|+|++|+++|++ +|++....|.|
T Consensus 293 ~a~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~g~~G~v~f~~-~g~~~~~~~~~ 343 (344)
T cd06348 293 RLNQKQKLAELPL-------PELRTALNAALLSGQYDTPLGEISFTP-DGEVLQKAFYV 343 (344)
T ss_pred HhcCCCccccchh-------hhHHHHHHHHHhccCCccceeeeEECC-CCCcccCceec
Confidence 99732111 0001 122568899999999999999999999 99988766643
No 47
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=100.00 E-value=2.8e-31 Score=288.59 Aligned_cols=337 Identities=11% Similarity=0.065 Sum_probs=256.7
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
||||++.|++| +...+|+++|+++||++|| +.|++|+++++| ++++|..+++.+++|+.+ +|.+||||.+
T Consensus 1 IkIG~~~plSG~~a~~G~~~~~G~~lAv~~iNa~GG--i~Gr~ielv~~D-~~~~p~~a~~~a~~li~~d~v~~viG~~~ 77 (374)
T TIGR03669 1 IKLGVLEDRSGNFALVGTPKWHASQLAIEEINKSGG--ILGRQIELIDPD-PQSDNERYQELTRRLLNRDKVDALWAGYS 77 (374)
T ss_pred CEEEEEeCCCCCchhccHHHHHHHHHHHHHHHhcCC--CCCceeEEEEeC-CCCCHHHHHHHHHHHHHhCCCCEEEcCCc
Confidence 79999999998 6789999999999999999 457899999999 669999999999999986 9999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVL 153 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~ 153 (821)
|..+.++.+++++.++|+|..... ......+|+||+.|++..++.++++++....-++++++++++++.....+.+
T Consensus 78 S~~~~A~~~~~~~~~~~~i~~~~~----~~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~g~~va~l~~d~~~g~~~~~~~ 153 (374)
T TIGR03669 78 SATREAIRPIIDRNEQLYFYTNQY----EGGVCDEYTFAVGATARQQLGTVVPYMVEEYGKKIYTIAADYNFGQLSADWV 153 (374)
T ss_pred hHHHHHHHHHHHhcCceEEcCccc----ccccCCCCEEEcCCChHHHHHHHHHHHHHcCCCeEEEEcCCcHHHHHHHHHH
Confidence 999999999999999999965311 1123468999999999999999999987643378999999987544443333
Q ss_pred HhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccc
Q psy16206 154 ENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSY 232 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~ 232 (821)
+..- +..|..+. ...++.+..||.+++.+|+++++|+|++...+.+...+++|++++|+..+.. ...+
T Consensus 154 ~~~~------~~~G~~vv~~~~~~~g~~Df~~~l~~i~~~~pD~V~~~~~g~~~~~~~kq~~~~G~~~~~~---~~~~-- 222 (374)
T TIGR03669 154 RVIA------KENGAEVVGEEFIPLSVSQFSSTIQNIQKADPDFVMSMLVGANHASFYEQAASANLNLPMG---TSTA-- 222 (374)
T ss_pred HHHH------HHcCCeEEeEEecCCCcchHHHHHHHHHHcCCCEEEEcCcCCcHHHHHHHHHHcCCCCccc---chhh--
Confidence 3221 02345554 5568888999999999999999999999988889999999999999964321 1110
Q ss_pred cccccccCcccccCCceeeEEEEee--cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHh
Q psy16206 233 WINAHTVDFQDFQPGYANITTVRMI--NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSL 310 (821)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~ 310 (821)
................++.+...+ ..+++..++|.++|+++++.. ..++.++..+||+++++++|++++
T Consensus 223 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~F~~~y~~~~g~~--------p~~~~~a~~~Yda~~~l~~Ai~~A 293 (374)
T TIGR03669 223 -MAQGYEHKRFEPPALKDVYAGVNYMEEIDTPENEAFVERFYAKFPDA--------PYINQEAENNYFSVYMYKQAVEEA 293 (374)
T ss_pred -hhhhhhhhhcCchhhCCcEEeeeccccCCCHHHHHHHHHHHHHcCCC--------CCCChHHHHHHHHHHHHHHHHHHh
Confidence 100000000001122344433332 335788899999999998432 023567889999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCchhHHHhhhh-ceeccceeeEEEeCCCCccceeEEEEEEEeecc-eEEEEEEe
Q psy16206 311 GERKPLPTPLSCENPSSWQHGLGIGNLMKS-ITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQ-WKVLGTWN 381 (821)
Q Consensus 311 ~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~-~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~-~~~vG~w~ 381 (821)
+ ..+++.+.++|++ .+++|+.|+++||+ +++.....+.+.+++.++ +..+..|+
T Consensus 294 G----------------s~d~~av~~aL~~~~~~~~~~G~i~fd~-~~~~~~~~~~v~~~~~~~~~~~~~~~~ 349 (374)
T TIGR03669 294 G----------------TTDQDAVRDVLESGVEMDAPEGKVCIDG-ATHHMSHTMRLARADADHNITFVKEQE 349 (374)
T ss_pred C----------------CCCHHHHHHHHHcCCeEECCCccEEEcC-CCCeeeeeeEEEEEcCCCCEEEEEecC
Confidence 8 5688999999986 67999999999998 776665666677776543 56666666
No 48
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=100.00 E-value=3.9e-31 Score=287.03 Aligned_cols=329 Identities=12% Similarity=0.082 Sum_probs=256.4
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||++.|++| +.+.+|+++|+++||++|| +.|++|+++++| +.++|.++++.+++|+++ +|.+|+||.+|
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iN~~GG--i~G~~ielv~~D-~~~~p~~a~~~a~~Li~~~~V~~iiG~~~S 77 (348)
T cd06355 1 KVGILHSLSGTMAISETTLKDAELLAIEEINAAGG--VLGRKIEAVVED-GASDWPTFAEKARKLLTQDKVAAVFGCWTS 77 (348)
T ss_pred CeEEEEcCCCcccccchhHHHHHHHHHHHHHhcCC--CCCcEEEEEEeC-CCCCHHHHHHHHHHHHHhCCCcEEEeccch
Confidence 7999999999 6688999999999999999 458899999999 559999999999999987 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-CCCCEEEEEEecCCchhHHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-MDWDTFTIIYETHDNLVYLQQVL 153 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~~w~~v~ii~~~~~~~~~~~~~~ 153 (821)
..+.++.+++++.++|++++...+. ...++|+||+.+.+..++..+++++.. .++|+|++++.|+++...+.+.+
T Consensus 78 ~~~~a~~~~~~~~~~~~i~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~k~vaii~~d~~~g~~~~~~~ 153 (348)
T cd06355 78 ASRKAVLPVFERHNGLLFYPVQYEG----LEQSPNVFYTGAAPNQQIIPAVDWLMSNKGGKRFYLVGSDYVYPRTANKIL 153 (348)
T ss_pred hhHHHHHHHHhccCCceecCCCccC----CCCCCCEEEeCCChHHhHHHHHHHHHhccCCCeEEEECCcchHHHHHHHHH
Confidence 9999999999999999998753221 345789999999998888888888775 57999999999987544444433
Q ss_pred Hh-cCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 154 EN-AHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 154 ~~-~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
+. .. ..|..+.. ..++.+..||.+++.+|++.++|+|++...+.++..+++|++++|+..+...++...
T Consensus 154 ~~~~~-------~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-- 224 (348)
T cd06355 154 KAQLE-------SLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVSTVNGDSNVAFFKQLKAAGITASKVPVLSFS-- 224 (348)
T ss_pred HHHHH-------HcCCeEEeeEEecCChhhHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHcCCCccCCeeEEcc--
Confidence 32 22 33556554 467777999999999999999999999999999999999999999976544444322
Q ss_pred ccccccccCccccc-CCceeeEEEEe--ecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDFQ-PGYANITTVRM--INPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQ 308 (821)
Q Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~ 308 (821)
.... .+.... ....|+..... ...+++..++|.++|+++++.. ..+..++..+||+++++++|++
T Consensus 225 --~~~~--~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~g~~--------~~~~~~a~~~Y~a~~~~~~Al~ 292 (348)
T cd06355 225 --VAEE--ELRGIGPENLAGHYAAWNYFQSVDTPENKKFVAAFKARYGQD--------RVTNDPMEAAYIGVYLWKQAVE 292 (348)
T ss_pred --ccHH--HHhhcChHhhcCCEEeccchhhcCCHHHHHHHHHHHHHcCCC--------CCCCcHHHHHHHHHHHHHHHHH
Confidence 2111 111121 12245443322 2346788899999999988432 1234567889999999999999
Q ss_pred HhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe-ecceE
Q psy16206 309 SLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV-SDQWK 375 (821)
Q Consensus 309 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~-~~~~~ 375 (821)
+++ ..+++++.++|++.+|+++.|.++|++ .++.....+.+.++. ++.++
T Consensus 293 ~ag----------------~~~~~~i~~aL~~~~~~~~~g~~~f~~-~~~~~~~~~~i~~~~~~g~~~ 343 (348)
T cd06355 293 KAG----------------SFDVDKVRAALPGQSFDAPEGPVTVDP-ANHHLWKPVRIGRIQADGQFE 343 (348)
T ss_pred HhC----------------CCCHHHHHHHhccCcccCCCcceEeec-CCCeeeeeeEEEEEcCCCcEE
Confidence 998 467889999999999999999999998 666655666677775 34444
No 49
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-31 Score=287.71 Aligned_cols=332 Identities=16% Similarity=0.168 Sum_probs=261.1
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
||||++.|++| .+..+++++|+++||+.|+ ..|.+|+++++| +.+||..+++.+++|+.+ +|.+|||+.+
T Consensus 11 IkIGv~~plsG~~A~~G~~~~~ga~lAv~~iNa~Gg--i~G~~velv~~D-~~~dp~~a~~~A~~li~~~~V~~vvG~~~ 87 (366)
T COG0683 11 IKIGVVLPLSGPAAAYGQQIKNGAELAVEEINAAGG--ILGRKVELVVED-DASDPATAAAVARKLITQDGVDAVVGPTT 87 (366)
T ss_pred eEEEEEecCCchhhhhChHHHHHHHHHHHHHhhhCC--cCCceEEEEEec-CCCChHHHHHHHHHHHhhcCceEEEEecc
Confidence 79999999999 7789999999999999999 445459999999 669999999999999996 9999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-CCCCEEEEEEecCCchhHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-MDWDTFTIIYETHDNLVYLQQV 152 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~~w~~v~ii~~~~~~~~~~~~~ 152 (821)
|..+.++.+++++.++|+|+++++...+......+++||++|.+..++.++++++.. .+.|+|+++++++.+...+.+.
T Consensus 88 S~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~ 167 (366)
T COG0683 88 SGVALAASPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGGKKRVAIIGDDYAYGEGLADA 167 (366)
T ss_pred CcccccchhhHhhcCceEEeecCCCCcccccccccceEEecCChHHHHHHHHHHHHHhcCCcEEEEEeCCCCcchhHHHH
Confidence 999999999999999999999776443344555566999999999999999999876 4545999999999865555544
Q ss_pred HHhcCCCCCcCCCCCCeE-EEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 153 LENAHDDDKEIRPGRPSV-TIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v-~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
++... +..|..+ ....+.+...+|..++.++++.++++|++.+...+...|++|+++.|+....+ +....
T Consensus 168 ~~~~l------~~~G~~~~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~r~~~~~G~~~~~~-~~~~~-- 238 (366)
T COG0683 168 FKAAL------KALGGEVVVEEVYAPGDTDFSALVAKIKAAGPDAVLVGGYGPDAALFLRQAREQGLKAKLI-GGDGA-- 238 (366)
T ss_pred HHHHH------HhCCCeEEEEEeeCCCCCChHHHHHHHHhcCCCEEEECCCCccchHHHHHHHHcCCCCccc-ccccc--
Confidence 44332 1334533 34567777777999999999999999999999999999999999999976532 22111
Q ss_pred ccccccccCcccc-cCCce--eeEEEEe-ecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDF-QPGYA--NITTVRM-INPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAAL 307 (821)
Q Consensus 232 ~~~~~~~~~~~~~-~~~~~--~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al 307 (821)
.. ...... ..... ....... ....+|..+.|.++|+++++. ...++.++..+||++++++.|+
T Consensus 239 ---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~g~--------~~~~~~~~~~~y~a~~~~~~ai 305 (366)
T COG0683 239 ---GT--AEFEEIAGAGGAGAGLLATAYSTPDDSPANKKFVEAYKAKYGD--------PAAPSYFAAAAYDAVKLLAKAI 305 (366)
T ss_pred ---Cc--hhhhhhcccCccccEEEEecccccccCcchHHHHHHHHHHhCC--------CCCcccchHHHHHHHHHHHHHH
Confidence 11 111111 11112 2222222 233466778899999999852 2345678999999999999999
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhce-eccceeeEEEeCCCCccceeEEEEEEEeecc
Q psy16206 308 QSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSIT-IDGMTGRINLDSQTGRRNSFSLEFVEYVSDQ 373 (821)
Q Consensus 308 ~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~-~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~ 373 (821)
++++. ..+.+++.++|++.. +++.+|.+.||+ +|++....+.|.++..++
T Consensus 306 ~~a~~---------------~~d~~~v~~al~~~~~~~~~~G~v~~~~-~~~~~~~~~~i~~~~~~~ 356 (366)
T COG0683 306 EKAGK---------------SSDREAVAEALKGGKFFDTAGGPVTFDE-KGDRGSKPVYVGQVQKGG 356 (366)
T ss_pred HHHhc---------------CCCHHHHHHHHhhCCCCccCCcceeECC-CCCcCCCceEEEEEEecC
Confidence 99982 244788999999887 799999999999 999999999998888654
No 50
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=100.00 E-value=2.4e-31 Score=288.87 Aligned_cols=320 Identities=14% Similarity=0.144 Sum_probs=252.4
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCC-CCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKA-LPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~-ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
|||++.|++| +....|+++|+++||++||. .++|++|+++++| ++++|..+.+.+++|+++ +|.+|+||.+
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~lA~~~iN~~GGi~~i~G~~v~lv~~D-~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 79 (347)
T cd06340 1 KIGVLLPLSGGLAAIGQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGD-SQGNPDIGATEAERLITEEGVVALVGAYQ 79 (347)
T ss_pred CceeEecCCchhhhhCHHHHHHHHHHHHHHHhcCCccCCCCceEEEEEec-CCCCHHHHHHHHHHHhccCCceEEecccc
Confidence 7999999999 66889999999999999861 2578999999999 668999999999999998 9999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC------CCCEEEEEEecCCchh
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM------DWDTFTIIYETHDNLV 147 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~------~w~~v~ii~~~~~~~~ 147 (821)
|..+.+++++++++++|+|+++++...++ ...++|+||+.|++..++.++++++.++ +|++++++++++.+..
T Consensus 80 s~~~~a~~~~~~~~~ip~i~~~~~~~~l~-~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~g~ 158 (347)
T cd06340 80 SAVTLAASQVAERYGVPFVVDGAVSDSIT-ERGFKYTFRITPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHEDTEFGT 158 (347)
T ss_pred hHhHHHHHHHHHHhCCCEEeccccchHHh-hcCCceEEecCCChHHHHHHHHHHHHHhhHhcCCCCceEEEEecCchHhH
Confidence 99999999999999999999866543323 4467899999999999999999999875 4699999999887655
Q ss_pred HHHHHHHh-cCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEE
Q psy16206 148 YLQQVLEN-AHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNY 225 (821)
Q Consensus 148 ~~~~~~~~-~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~ 225 (821)
...+.++. .. ..|.+|.. ..++.+..||++++.+|++.++++|++.+...++..+++|+++.|+..+ ..+
T Consensus 159 ~~~~~~~~~~~-------~~G~~vv~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~G~~~~-~~~ 230 (347)
T cd06340 159 SVAEAIKKFAK-------ERGFEIVEDISYPANARDLTSEVLKLKAANPDAILPASYTNDAILLVRTMKEQRVEPK-AVY 230 (347)
T ss_pred HHHHHHHHHHH-------HcCCEEEEeeccCCCCcchHHHHHHHHhcCCCEEEEcccchhHHHHHHHHHHcCCCCc-EEE
Confidence 45444433 32 44666664 4677778899999999999999999999999999999999999999653 222
Q ss_pred EEecccccccccccCcccccCCceeeEEEEeecC-CChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHH
Q psy16206 226 ILSLTSYWINAHTVDFQDFQPGYANITTVRMINP-TNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFA 304 (821)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a 304 (821)
...++ ..... -.........|++....+.. ..+..++|.++|+++++.. ++.++..+||++++++
T Consensus 231 ~~~~~---~~~~~-~~~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~y~~~~~~~----------~~~~~~~~Y~a~~~l~ 296 (347)
T cd06340 231 SVGGG---AEDPS-FVKALGKDAEGILTRNEWSDPKDPMAKDLNKRFKARFGVD----------LSGNSARAYTAVLVIA 296 (347)
T ss_pred ecCCC---cCcHH-HHHHhhHhhheEEeccccCCCCChHHHHHHHHHHHHhCCC----------CChHHHHHHHHHHHHH
Confidence 22221 11000 01122223456666554443 3678899999999988432 6788899999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCchhHHH--hhhhceec---cceeeEEEeCCCCcccee
Q psy16206 305 AALQSLGERKPLPTPLSCENPSSWQHGLGIGN--LMKSITID---GMTGRINLDSQTGRRNSF 362 (821)
Q Consensus 305 ~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~--~l~~~~~~---G~tG~i~fd~~~g~~~~~ 362 (821)
+|+++++ ..+++.+.+ +|++..+. +.+|+++||+ +|+..+.
T Consensus 297 ~A~~~ag----------------~~~~~~v~~~~~~~~~~~~~~~~~~g~~~f~~-~g~~~~~ 342 (347)
T cd06340 297 DALERAG----------------SADPEKIRDLAALASTSGEDLIMPYGPIKFDA-KGQNTNA 342 (347)
T ss_pred HHHHHhc----------------CCCHHHHHHHHHhccCCccccccCCCCeeECC-CCCcccc
Confidence 9999998 467788884 78777664 5789999999 9987654
No 51
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=100.00 E-value=4.3e-31 Score=285.31 Aligned_cols=316 Identities=15% Similarity=0.116 Sum_probs=245.8
Q ss_pred cEEEEeCCCc-----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE-----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~-----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s~ 75 (821)
.||++.|++| +...+|+++|+++||++++ +.|++|+++++| +++||..+.+.+++|+.+ +|.+|+|+.+|.
T Consensus 1 ~iG~~~p~sG~a~~G~~~~~g~~lA~~~iNa~gg--i~G~~ielv~~D-~~~~p~~a~~~a~~li~~~~v~aiiG~~~s~ 77 (332)
T cd06344 1 TIAVVVPIGKNPNLAEEILRGVAQAQTEINLQGG--INGKLLKVVIAN-DGNDPEIAKKVADELVKDPEILGVVGHYSSD 77 (332)
T ss_pred CeEEEEecCCChhhHHHHHHHHHHHHHHHHhcCC--CCCCeEEEEEEC-CCCChHHHHHHHHHHhcccCceEEEcCCCcH
Confidence 5899999997 6677899999999999998 678899999999 669999999999999988 999999999999
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCC-CCEEEEEEecCC-chhHHHHHH
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMD-WDTFTIIYETHD-NLVYLQQVL 153 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~-w~~v~ii~~~~~-~~~~~~~~~ 153 (821)
.+.++++++++.++|+|++++++..++ ..++|+||+.|++..+++++++++.+++ |+++++++++++ +...+.+.+
T Consensus 78 ~~~a~~~~~~~~~ip~i~~~a~~~~lt--~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~~~~~~ 155 (332)
T cd06344 78 ATLAALDIYQKAKLVLISPTSTSVKLS--NPGPYFFRTVPSNAVAARALAKYLKKKNKIKKVAIFYNSTSPYSQSLKQEF 155 (332)
T ss_pred HHHHHHHHHhhcCceEEccCcCchhhc--CCCCcEEEeCCCcHHHHHHHHHHHHhhcCCCeEEEEeCCCchHhHHHHHHH
Confidence 999999999999999999865433322 4689999999999999999999998876 999999999876 555554443
Q ss_pred HhcCCCCCcCCC-CCCeEEEE-EcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 154 ENAHDDDKEIRP-GRPSVTIR-QLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 154 ~~~~~~~~~~~~-~g~~v~~~-~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
.... +. .|..+... .++..+.++.+++.++++.++++|++.+.......+++++++.+.. ..++.+++
T Consensus 156 ~~~~------~~~~g~~v~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~- 225 (332)
T cd06344 156 TSAL------LERGGGIVVTPCDLSSPDFNANTAVSQAINNGATVLVLFPDTDTLDKALEVAKANKGR---LTLLGGDS- 225 (332)
T ss_pred HHHH------HHhcCCeeeeeccCCCCCCCHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHhcCCC---ceEEeccc-
Confidence 3332 02 14444432 3444467889999999999999999999988888999999887752 22333331
Q ss_pred ccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhh
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLG 311 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~ 311 (821)
+..... .........|+.+...+.++++..++|.++|+++++. +++.+++.+||+++++++|+++++
T Consensus 226 --~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~----------~~~~~a~~~Yda~~~l~~A~~~ag 292 (332)
T cd06344 226 --LYTPDT-LLDGGKDLEGLVLAVPWHPLASPNSPFAKLAQQLWGG----------DVSWRTATAYDATKALIAALSQGP 292 (332)
T ss_pred --ccCHHH-HHhchhhhcCeEEEEecccccccchHHHHHHHHHhcC----------CchHHHHhHHHHHHHHHHHHHhCC
Confidence 111111 1111123356666655555567789999999998843 267889999999999999999987
Q ss_pred ccCCCCCCCCCCCCCCCCCchhHH-HhhhhceeccceeeEEEeCCCCcccee
Q psy16206 312 ERKPLPTPLSCENPSSWQHGLGIG-NLMKSITIDGMTGRINLDSQTGRRNSF 362 (821)
Q Consensus 312 ~~~~~~~~~~c~~~~~~~~g~~l~-~~l~~~~~~G~tG~i~fd~~~g~~~~~ 362 (821)
..++..+. .++++..|+|+.|++.||+ +|++...
T Consensus 293 ----------------~~~~~~~~~~~~~~~~~~g~~g~i~f~~-~g~~~~~ 327 (332)
T cd06344 293 ----------------TREGVQQVELSLRNFSVQGATGKIKFLP-SGDRNGQ 327 (332)
T ss_pred ----------------ChhhhhhhhhhcccccccCCCceeEeCC-CCcccCc
Confidence 34455555 6777888999999999999 9988643
No 52
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=100.00 E-value=5.8e-31 Score=286.84 Aligned_cols=302 Identities=18% Similarity=0.241 Sum_probs=239.2
Q ss_pred cEEEEeCCCc----------------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--
Q psy16206 2 KIVGIFGPNE----------------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-- 63 (821)
Q Consensus 2 ~IG~i~~~~~----------------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-- 63 (821)
.||++||..+ .....|+.+|+++||++++ +++|++|+++++| +|++|.++++++++|+.+
T Consensus 1 ~ig~lf~~~~~~~~~~~~c~~~~~~~~~~~~~~~~Av~~iN~~~~-~l~g~~l~l~~~D-~~~~~~~a~~~a~~li~~~~ 78 (348)
T cd06350 1 IIGGLFPLHSGSESVSLKCGRFGKKGLQAAEAMLFAVEEINNDPD-LLPNITLGYHIYD-SCCSPAVALRAALDLLLSGE 78 (348)
T ss_pred CeEEEEeCcccccCCCcccceechHHHHHHHHHHHHHHHHcCCCc-cCCCCceeEEEEe-cCCcchHHHHHHHHHHhcCC
Confidence 4788888765 3456799999999999987 7899999999999 779999999999999985
Q ss_pred ------------CeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC
Q psy16206 64 ------------GIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM 131 (821)
Q Consensus 64 ------------~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~ 131 (821)
+|.+||||.||..+.+++++++.+++|+|+++++++.+++...++|+||+.|++..++.+++++++++
T Consensus 79 ~~~~~~~~~~~~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~~~~~ 158 (348)
T cd06350 79 GTTPPYSCRKQPKVVAVIGPGSSSVSMAVAELLGLFKIPQISYGATSPLLSDKLQFPSFFRTVPSDTSQALAIVALLKHF 158 (348)
T ss_pred CCCCCCcCCCCCceEEEECCCccHHHHHHHHHHhcCcCceecccCCChhhccccccCCeeEecCCcHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999997765544556778999999999999999999999999
Q ss_pred CCCEEEEEEecCCc-hhHHHHHHHhcCCCCCcCCCCCCeEEE-EEcCCC--CCChHHHHHHhhcCCCcEEEEeCChhHHH
Q psy16206 132 DWDTFTIIYETHDN-LVYLQQVLENAHDDDKEIRPGRPSVTI-RQLPPD--TDDYRPLLKEIKNSSESHILLDCSMDKTV 207 (821)
Q Consensus 132 ~w~~v~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~v~~-~~~~~~--~~d~~~~l~~lk~~~~~~ivl~~~~~~~~ 207 (821)
+|++|+++++++++ ....+.+.+... ..|+++.. ..++.. ..|+.+.+++|++.++|+|++.+.+.++.
T Consensus 159 ~~~~v~~l~~~~~~g~~~~~~~~~~~~-------~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~~~~~ 231 (348)
T cd06350 159 GWTWVGLVYSDDDYGRSGLSDLEEELE-------KNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGDEDDAL 231 (348)
T ss_pred CCeEEEEEEecchhHHHHHHHHHHHHH-------HCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeCcHHHH
Confidence 99999999998874 333344444443 44677764 457664 47899999999999999999999999999
Q ss_pred HHHHHHHHccccCcceEEEEecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhccccccccccc
Q psy16206 208 TILKQAKEVHLMGDYQNYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAE 287 (821)
Q Consensus 208 ~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 287 (821)
.++++++++|+ ...+.| ..++ +...............++.+...+.+.+...++|.+.+++
T Consensus 232 ~~~~~a~~~g~-~~~~~i-~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~-------------- 292 (348)
T cd06350 232 RLFCEAYKLGM-TGKYWI-ISTD---WDTSTCLLLFTLDAFQGVLGFSGHAPRSGEIPGFKDFLRK-------------- 292 (348)
T ss_pred HHHHHHHHhCC-CCeEEE-EEcc---ccCccccccCCcceeeeEEEEEEEeecCCcCCChHHHHHH--------------
Confidence 99999999999 444444 4432 2222111122223456777777766554455556665543
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEE
Q psy16206 288 TVKIEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFV 367 (821)
Q Consensus 288 ~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~ 367 (821)
+++++|||+++ .+.|++ +|++. ..+.+.
T Consensus 293 ----~~~~~YDav~~----------------------------------------------~v~f~~-~gd~~-~~~~i~ 320 (348)
T cd06350 293 ----YAYNVYDAVYA----------------------------------------------EVKFDE-NGDRL-ASYDII 320 (348)
T ss_pred ----HHHHHHhheeE----------------------------------------------EEEecC-CCCcc-cceeEE
Confidence 56889999876 789998 89987 668888
Q ss_pred EEee----cceEEEEEEecC
Q psy16206 368 EYVS----DQWKVLGTWNTA 383 (821)
Q Consensus 368 ~~~~----~~~~~vG~w~~~ 383 (821)
+++. ..++.||.|++.
T Consensus 321 ~~~~~~~~~~~~~vg~~~~~ 340 (348)
T cd06350 321 NWQIFPGGGGFVKVGFWDPQ 340 (348)
T ss_pred EEEEcCCcEEEEEEEEEcCC
Confidence 8766 679999999984
No 53
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=100.00 E-value=1.6e-30 Score=280.90 Aligned_cols=318 Identities=10% Similarity=0.052 Sum_probs=250.8
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||+++|++| ..+.+|+++|++++| ++ +.|++|+++++| ++++|..+.+.+++|+.+ +|.+|+||.+|
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~lAv~~in--gg--i~G~~i~l~~~D-~~~~p~~a~~~~~~lv~~~~v~~viG~~~s 75 (333)
T cd06359 1 KIGFITTLSGPAAALGQDMRDGFQLALKQLG--GK--LGGLPVEVVVED-DGLKPDVAKQAAERLIKRDKVDFVTGVVFS 75 (333)
T ss_pred CeEEEEecccchhhhhHHHHHHHHHHHHHhC--Cc--cCCEEEEEEecC-CCCChHHHHHHHHHHHhhcCCcEEEccCCc
Confidence 7999999999 567899999999998 55 578999999999 569999999999999988 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLE 154 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~ 154 (821)
..+.++++++++.++|+|++++++..+.++..++|+||+.|++..+..+++.++...||++++++++++++.....+.++
T Consensus 76 ~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~~~vail~~~~~~g~~~~~~~~ 155 (333)
T cd06359 76 NVLLAVVPPVLESGTFYISTNAGPSQLAGKQCSPYFFSTSWQNDQVHEAMGKYAQDKGYKRVFLIAPNYQAGKDALAGFK 155 (333)
T ss_pred HHHHHHHHHHHHcCCeEEecCCCccccccccCCCcEEEeeCChHhhHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHH
Confidence 99999999999999999998655444344445899999999999999999999999999999999998886555545444
Q ss_pred hcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccc
Q psy16206 155 NAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWI 234 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~ 234 (821)
... . +..+....++.+.+||.+++.++++.++|+|++...+..+..+++|+++.|+... ..++.... .
T Consensus 156 ~~~-------~-~~v~~~~~~~~~~~d~~~~i~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~---~ 223 (333)
T cd06359 156 RTF-------K-GEVVGEVYTKLGQLDFSAELAQIRAAKPDAVFVFLPGGMGVNFVKQYRQAGLKKD-IPLYSPGF---S 223 (333)
T ss_pred HHh-------C-ceeeeeecCCCCCcchHHHHHHHHhCCCCEEEEEccCccHHHHHHHHHHcCcccC-CeeeccCc---c
Confidence 432 1 2223334456668899999999999999999998888889999999999998542 23333221 1
Q ss_pred cccccCcccccCCceeeEEEEeecC--CChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhc
Q psy16206 235 NAHTVDFQDFQPGYANITTVRMINP--TNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGE 312 (821)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~ 312 (821)
... ...+.......|+.....+.+ +++..++|.++|+++++. .++.++..+||+++++++|+++++.
T Consensus 224 ~~~-~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----------~~~~~~~~~yda~~~~~~A~~~ag~ 292 (333)
T cd06359 224 DEE-DTLPAVGDAALGLYNTAQWAPDLDNPANKKFVADFEKKYGR----------LPTLYAAQAYDAAQLLDSAVRKVGG 292 (333)
T ss_pred cCH-HHHHhcchhhcCeeeccccCCCCCCHHHHHHHHHHHHHhCC----------CCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 111 011222233456665554433 578899999999998743 3678889999999999999999872
Q ss_pred cCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCcccee
Q psy16206 313 RKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSF 362 (821)
Q Consensus 313 ~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~ 362 (821)
+ ..+++.+.++|++..|+|++|+++|++ +|+....
T Consensus 293 ~--------------~~~~~~v~~al~~~~~~~~~G~~~~~~-~~~~~~~ 327 (333)
T cd06359 293 N--------------LSDKDALRAALRAADFKSVRGAFRFGT-NHFPIQD 327 (333)
T ss_pred C--------------CCCHHHHHHHHhcCccccCccceEECC-CCCccee
Confidence 1 136788999999999999999999998 8765433
No 54
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=99.98 E-value=1.2e-30 Score=282.14 Aligned_cols=315 Identities=16% Similarity=0.139 Sum_probs=249.4
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||+++|++| ....+++++|++++|+++| +.|++|+++++| +++||..+.+++++|+++ +|.+|+||.+|
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gG--i~G~~i~l~~~D-~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s 77 (333)
T cd06331 1 KIGLLFSLSGPAAISEPSLRNAALLAIEEINAAGG--ILGRPLELVVED-PASDPAFAAKAARRLIRDDKVDAVFGCYTS 77 (333)
T ss_pred CeEEEecCCCccccccHHHHHHHHHHHHHHHhcCC--CCCeEEEEEEEC-CCCCHHHHHHHHHHHHhccCCcEEEecccH
Confidence 7999999998 6788999999999999999 578899999999 558999999999999998 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLE 154 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~ 154 (821)
..+.++.+++++.++|+|+++..+. ....+|+||+.|++..+..++++++...+|++|++++.++.+...+.+.++
T Consensus 78 ~~~~a~~~~~~~~~vp~i~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~~~g~~~~~~~~ 153 (333)
T cd06331 78 ASRKAVLPVVERGRGLLFYPTQYEG----GECSPNVFYTGATPNQQLLPLIPYLMEKYGKRFYLIGSDYVWPRESNRIAR 153 (333)
T ss_pred HHHHHHHHHHHhcCceEEeCCCCCC----CcCCCCeEEccCChHHhHHHHHHHHHHhcCCeEEEECCCchhHHHHHHHHH
Confidence 9999999999999999999754322 234689999999999999999998877669999999998875443433333
Q ss_pred hcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccccc
Q psy16206 155 NAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYW 233 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~ 233 (821)
... +..|..+. ...++++..||++++.++++.++++|++.+.+.++..+++|+.+.|+..... ++.+..
T Consensus 154 ~~~------~~~G~~vv~~~~~~~~~~d~~~~v~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~--- 223 (333)
T cd06331 154 ALL------EELGGEVVGEEYLPLGTSDFGSVIEKIKAAGPDVVLSTLVGDSNVAFYRQFAAAGLDADRI-PILSLT--- 223 (333)
T ss_pred HHH------HHcCCEEEEEEEecCCcccHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHHHcCCCcCCC-eeEEcc---
Confidence 322 13345554 4578888899999999999999999999999999999999999999973332 232221
Q ss_pred ccccccCcccccC-CceeeEEEEee--cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHh
Q psy16206 234 INAHTVDFQDFQP-GYANITTVRMI--NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSL 310 (821)
Q Consensus 234 ~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~ 310 (821)
.. ...+..... ...|+.....+ ..+.+..++|.++|+++++.. ..++.+++.+||+++++++|++++
T Consensus 224 ~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--------~~~~~~~~~~yda~~~~~~A~~~a 293 (333)
T cd06331 224 LD--ENELAAIGAEAAEGHYSAASYFQSLDTPENKAFVARYRARYGDD--------AVINSPAEAAYEAVYLWAAAVEKA 293 (333)
T ss_pred cc--hhhhhccChhhhCCcEeechhhhhcCChhHHHHHHHHHHHcCCC--------cCCCchhHHHHHHHHHHHHHHHHc
Confidence 11 111222211 23455554433 234677899999998877422 136778899999999999999998
Q ss_pred hccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccc
Q psy16206 311 GERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRN 360 (821)
Q Consensus 311 ~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~ 360 (821)
+ ..+++.+.++|++.+|+|++|.+.|++ ++++.
T Consensus 294 g----------------~~~~~~l~~al~~~~~~~~~G~i~f~~-~~~~~ 326 (333)
T cd06331 294 G----------------STDPEAVRAALEGVSFDAPQGPVRIDP-DNHHT 326 (333)
T ss_pred C----------------CCCHHHHHHHhhcCcccCCCCceEecC-CCCcc
Confidence 7 357889999999999999999999998 77765
No 55
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=99.98 E-value=1.4e-30 Score=282.54 Aligned_cols=312 Identities=10% Similarity=0.078 Sum_probs=247.5
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~ 75 (821)
|||++.|++| ...++|+++|+++||+++| +.|++|++++.| ++++|.++++.+++|++++|++|+||.+|.
T Consensus 1 ~IG~l~p~sG~~a~~G~~~~~g~~~a~~~iN~~GG--i~G~~i~l~~~D-~~~~p~~a~~~a~~lv~~~v~aiiG~~~s~ 77 (342)
T cd06329 1 KIGVIDPLSGPFASLGELVRRGLQLAADEINAKGG--VDGRPIELVEED-NKGSPQEALRKAQKAIDDGVRLVVQGNSSS 77 (342)
T ss_pred CeeeeccCCCCcccccHHHHHHHHHHHHHHHhcCC--cCCeEEEEEecc-CCCChHHHHHHHHHHHHhCCeEEEcccchH
Confidence 6999999999 6688999999999999998 668899999999 669999999999999999999999999999
Q ss_pred hHHHH-------HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCC-CCEEEEEEecCCchh
Q psy16206 76 NRNII-------ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMD-WDTFTIIYETHDNLV 147 (821)
Q Consensus 76 ~~~~v-------~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~-w~~v~ii~~~~~~~~ 147 (821)
.+.++ +++++.+++|+|+++++...+++...++|+||+.|++..++.++++++...+ ||++++++.++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~~k~v~i~~~~~~~g~ 157 (342)
T cd06329 78 VALALTEAVRKHNQRNPGKEVLYLNYASVAPALTGEKCSFWHFRTDANTDMKMEALASYIKKQPDGKKVYLINQDYSWGQ 157 (342)
T ss_pred HHHHhhhhhhhhhhhhccCCeEEEecCCCCchhhhccCcceEEEecCChHHHHHHHHHHHHhcccCceEEEEeCChHHHH
Confidence 99999 8888999999999865544334445678999999999999999999998876 999999999887443
Q ss_pred HHHHHHH-hcCCCCCcCCC--CCCeEEE-EEcCCCC-CChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 148 YLQQVLE-NAHDDDKEIRP--GRPSVTI-RQLPPDT-DDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 148 ~~~~~~~-~~~~~~~~~~~--~g~~v~~-~~~~~~~-~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
...+.+. ... . .|..+.. ..++.+. +||.+++.+|++.++++|++...+.++..+++++++.|+..+
T Consensus 158 ~~~~~~~~~~~-------~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~- 229 (342)
T cd06329 158 DVAAAFKAMLA-------AKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGNDLLLLVKQAADAGLKLP- 229 (342)
T ss_pred HHHHHHHHHHH-------hhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCchHHHHHHHHHHcCCCce-
Confidence 3333222 222 2 4566653 4577667 899999999999999999998888889999999999999533
Q ss_pred eEEEEecccccccccccCcccccCCceeeEEEEee--cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHH
Q psy16206 223 QNYILSLTSYWINAHTVDFQDFQPGYANITTVRMI--NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAV 300 (821)
Q Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv 300 (821)
++.... .+.. ..........|......+ ..+++..++|.++|+++++. .++.++..+||++
T Consensus 230 --~~~~~~---~~~~--~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----------~~~~~~~~~y~~~ 292 (342)
T cd06329 230 --FYTPYL---DQPG--NPAALGEAGLGLVVAVAYWHPNDTPANRAFVEAFKAKYGR----------VPDYYEGQAYNGI 292 (342)
T ss_pred --EEeccc---cchh--HHHhhcccccceEEeeeccCCCCCHHHHHHHHHHHHHhCC----------CCCchHHHHHHHH
Confidence 333221 1111 111222233454444332 23467889999999988742 3567889999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCc
Q psy16206 301 YLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGR 358 (821)
Q Consensus 301 ~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~ 358 (821)
+++++|+++++ ..+++.+.++|++++|+|+.|+++|++ .++
T Consensus 293 ~~~~~a~~~ag----------------~~~~~~v~~al~~~~~~~~~g~~~~~~-~~~ 333 (342)
T cd06329 293 QMLADAIEKAG----------------STDPEAVAKALEGMEVDTPVGPVTMRA-SDH 333 (342)
T ss_pred HHHHHHHHHhC----------------CCCHHHHHHHHhCCccccCCCCeEEcc-cCc
Confidence 99999999987 467889999999999999999999997 443
No 56
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=99.98 E-value=5.4e-30 Score=279.10 Aligned_cols=330 Identities=12% Similarity=0.086 Sum_probs=251.9
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
|+||++.|++| +.+.+|+++|+++||++|| +.|++|+++++| +.++|..++..+++|+++ +|.+|+||.+
T Consensus 1 I~IG~l~plsG~~a~~g~~~~~g~~lav~~iN~~GG--i~G~~i~l~~~D-d~~~p~~a~~~a~~Lv~~~~V~~iiG~~~ 77 (359)
T TIGR03407 1 IKVGILHSLSGTMAISETTLKDAELMAIEEINASGG--VLGKKIEPVVED-GASDWPTFAEKARKLITQDKVAAVFGCWT 77 (359)
T ss_pred CeEEEEeCCCCchhhcchhHHHHHHHHHHHHHhcCC--CCCcEEEEEEeC-CCCCHHHHHHHHHHHHhhCCCcEEEcCCc
Confidence 79999999998 6678999999999999999 458899999999 669999999999999986 9999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-CCCCEEEEEEecCCchhHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-MDWDTFTIIYETHDNLVYLQQV 152 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~~w~~v~ii~~~~~~~~~~~~~ 152 (821)
|..+.++.++++..++|++.+.... ....++|+||+.|++..+..++++++.. .|.|++++++.|+++.....+.
T Consensus 78 S~~~~a~~~~~~~~~~~~i~~~~~~----~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~g~k~v~~l~~d~~~g~~~~~~ 153 (359)
T TIGR03407 78 SASRKAVLPVFEENNGLLFYPVQYE----GEECSPNIFYTGAAPNQQIIPAVDYLLSKKGAKRFFLLGSDYVFPRTANKI 153 (359)
T ss_pred HHHHHHHHHHHhccCCceEeCCccc----CcccCCCEEEcCCChHHHHHHHHHHHHhccCCceEEEecCccHHHHHHHHH
Confidence 9999999999999999999764211 1345789999999999999999898876 5999999999887644333333
Q ss_pred HHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 153 LENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
+++.. +..|..+. ...++.+..||.+++.+|++.++|+|++...+.....+++|++++|+..+...++...
T Consensus 154 ~~~~~------~~~G~~vv~~~~~~~~~~D~s~~v~~l~~~~pDav~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-- 225 (359)
T TIGR03407 154 IKAYL------KSLGGTVVGEDYTPLGHTDFQTIINKIKAFKPDVVFNTLNGDSNVAFFKQLKNAGITAKDVPVVSFS-- 225 (359)
T ss_pred HHHHH------HHcCCEEEeeEEecCChHhHHHHHHHHHHhCCCEEEEeccCCCHHHHHHHHHHcCCCccCCcEEEee--
Confidence 32221 02345554 4467777899999999999999999998888888889999999999965433233222
Q ss_pred ccccccccCccccc-CCceeeEEEEe--ecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDFQ-PGYANITTVRM--INPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQ 308 (821)
Q Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~ 308 (821)
.... .+..+. ....|+.+... ...+++..++|.++|+++++.. ..+..+++.+||+++++++|++
T Consensus 226 --~~~~--~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--------~~~~~~~~~~y~a~~~~~~A~~ 293 (359)
T TIGR03407 226 --VAEE--EIRGIGPENLVGHLAAWNYFQSVDTPANKKFVKAFKAKYGDD--------RVTNDPMEAAYLGVYLWKAAVE 293 (359)
T ss_pred --cCHH--HHhhcChHhhCCeEEeccchhcCCCHHHHHHHHHHHHHcCCC--------CCCCcHHHHHHHHHHHHHHHHH
Confidence 1111 111111 12345443322 2345688899999999887432 1123446678999999999999
Q ss_pred HhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe-ecce
Q psy16206 309 SLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV-SDQW 374 (821)
Q Consensus 309 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~-~~~~ 374 (821)
+++ ..++..++++|++.+|+++.|+++|++ +++.....+.+.++. ++.+
T Consensus 294 ~ag----------------~~~~~~i~~al~~~~~~~~~G~i~f~~-~~~~~~~~~~~~~~~~~g~~ 343 (359)
T TIGR03407 294 KAG----------------SFDVDAVRDAAIGIEFDAPEGKVKVDG-KNHHLTKTVRIGEIRADGQF 343 (359)
T ss_pred HhC----------------CCCHHHHHHHhcCCcccCCCccEEEeC-CCCeeeeeeEEEEEccCCCE
Confidence 998 357899999999999999999999997 566555666677775 4444
No 57
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=99.97 E-value=5.4e-30 Score=278.77 Aligned_cols=319 Identities=13% Similarity=0.075 Sum_probs=246.7
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||++.|++| +....|+++|++++|++++ ++|++|++++.| +++++..+.+.+++|+.+ +|.+||||.++
T Consensus 1 ~iG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gg--i~G~~v~~~~~D-~~~~~~~a~~~a~~li~~~~v~aiig~~~s 77 (346)
T cd06330 1 KIGVITFLSGRAAIFGEPARNGAELAVEEINAAGG--IGGRKIELVVRD-EAGKPDEAIREARELVENEGVDMLIGLISS 77 (346)
T ss_pred CeeEEeecCCchhhhcHHHHHHHHHHHHHHhhcCC--cCCeEEEEEEec-CCCCHHHHHHHHHHHHhccCCcEEEcccch
Confidence 7999999999 6688999999999999998 678899999999 669999999999999998 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCCch----hH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHDNL----VY 148 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~~~----~~ 148 (821)
..+.+++++++..++|+|++.++.....++..++|+||+.|++..+..++++++.++ +|++|++++.++.+. ..
T Consensus 78 ~~~~~~~~~~~~~~ip~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~g~~~~~~ 157 (346)
T cd06330 78 GVALAVAPVAEELKVFFIATDPGTPRLTEEPDNPYVFRTRNSTIMDAVAGALYAAKLDKKAKTWATINPDYAYGQDAWAD 157 (346)
T ss_pred HHHHHHHHHHHHcCCeEEEcCCCCcccccCCCCCceEEecCChHHHHHHHHHHHHHhCcCccEEEEECCchHHHHHHHHH
Confidence 999999999999999999986553322334568999999999999999999999886 499999999887633 34
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEE-EcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEE
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIR-QLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
+++.+++.+ . ++.+... .++...+|+.+++.+|++.++++|++.+.+.+...++++++++|+.. ...|+.
T Consensus 158 ~~~~~~~~g-------~-~~~~v~~~~~~~~~~d~~~~v~~i~~~~~d~ii~~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 228 (346)
T cd06330 158 FKAALKRLR-------P-DVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSLWGGDLVTFVRQANARGLFD-GTTVVL 228 (346)
T ss_pred HHHHHHHhC-------C-CCeecccccCCCCCcccHHHHHHHHhcCCCEEEEecccccHHHHHHHHHhcCccc-CceEEe
Confidence 444444443 1 3334333 34455789999999999999999999999999999999999999965 456776
Q ss_pred ecccccccccccCcccccCCceeeEEEE--eecC--CChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHH
Q psy16206 228 SLTSYWINAHTVDFQDFQPGYANITTVR--MINP--TNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLF 303 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~ 303 (821)
+.+ ....... .......|+.... .+.. +++..++|.++|+++++. .++.++..+||+++++
T Consensus 229 ~~~---~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~----------~p~~~~~~~y~a~~~l 293 (346)
T cd06330 229 TLT---GAPELAP--LGDEMPEGVIIGGRGPYFIPPDTPENKAFVDAYQEKYGD----------YPTYGAYGAYQAVMAL 293 (346)
T ss_pred ecc---chhhhhh--hhcccCCceEEeccccCCCCCCChHHHHHHHHHHHHHCC----------CCChHHHHHHHHHHHH
Confidence 552 1111011 1111223433222 1222 477889999999988742 2567889999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccc
Q psy16206 304 AAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRN 360 (821)
Q Consensus 304 a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~ 360 (821)
++|+++++.. ....+. +.+.++|++.+++|+.|++.|++ +.++.
T Consensus 294 ~~a~~~a~~~-----------~~~~~~-~~v~~al~~~~~~~~~G~~~f~~-~~~~~ 337 (346)
T cd06330 294 AAAVEKAGAT-----------DGGAPP-EQIAAALEGLSFETPGGPITMRA-ADHQA 337 (346)
T ss_pred HHHHHHhcCC-----------CCCCcH-HHHHHHHcCCCccCCCCceeeec-CCCcc
Confidence 9999999831 111111 46999999999999999999997 54443
No 58
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=99.97 E-value=1.1e-29 Score=278.21 Aligned_cols=334 Identities=11% Similarity=0.086 Sum_probs=261.0
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
||||++.|++| +....++++|++++|++++ +.|++|+++++| +++++..+++.+++|+.+ +|.+||||.+
T Consensus 7 i~iG~~~~~sG~~a~~g~~~~~g~~~a~~~~Na~gG--i~G~~i~l~~~D-~~~~~~~a~~~a~~li~~~~v~avvG~~~ 83 (362)
T cd06343 7 IKIGNTMPLSGPASAYGVIGRTGAAYFFMINNDQGG--INGRKIELIVED-DGYSPPKTVEQTRKLVESDEVFAMVGGLG 83 (362)
T ss_pred EEEeeccCCCCchhhhcHHHHHHHHHHHHHHHhcCC--cCCeEEEEEEec-CCCChHHHHHHHHHHHhhcCeEEEEecCC
Confidence 79999999998 6688999999999999998 568999999999 669999999999999986 9999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHH-HhCCCCEEEEEEecCCchhHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVII-NDMDWDTFTIIYETHDNLVYLQQV 152 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~-~~~~w~~v~ii~~~~~~~~~~~~~ 152 (821)
|..+.++.++++..+||+|++++++..++++..++|+||+.|++..++.++++++ ++++|++++++++++.+.....+.
T Consensus 84 s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~ 163 (362)
T cd06343 84 TPTNLAVQKYLNEKKVPQLFPASGASKWNDPKPFPWTFGWQPSYQDEARIYAKYLVEEKPNAKIAVLYQNDDFGKDYLKG 163 (362)
T ss_pred cHHHHHhHHHHHhcCCceEecccccHhhhCCCCCCceEecCCChHHHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHH
Confidence 9999999999999999999986654443445578999999999999999999975 467999999999988754333333
Q ss_pred -HHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecc
Q psy16206 153 -LENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLT 230 (821)
Q Consensus 153 -~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 230 (821)
.+... ..|.++. ...++.+.+||++++++|++.++++|++.+...++..++++++++|+... ++..++
T Consensus 164 ~~~~~~-------~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 233 (362)
T cd06343 164 LKDGLG-------DAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRKAAELGWKPT---FLLSSV 233 (362)
T ss_pred HHHHHH-------HcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHHcCCCce---EEEEec
Confidence 22232 3356655 44677778899999999999999999999999999999999999999753 444441
Q ss_pred cccccccccCccccc-CCceeeEEEEeec-------CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHH
Q psy16206 231 SYWINAHTVDFQDFQ-PGYANITTVRMIN-------PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYL 302 (821)
Q Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~ 302 (821)
.......+.... ....++.....+. ..++..++|.+.|+++++.. .+++.++..+||++.+
T Consensus 234 ---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~f~~~~~~~~~~~--------~~~~~~~~~~y~a~~~ 302 (362)
T cd06343 234 ---SASVASVLKPAGLEAAEGVIAAAYLKDPTDPAWADDPGVKEFIAFYKKYFPEG--------DPPDTYAVYGYAAAET 302 (362)
T ss_pred ---ccccHHHHHHhhhHhhCceEEEEEecCCCccccccCHHHHHHHHHHHHhcCCC--------CCCchhhhHHHHHHHH
Confidence 111111011111 1234555444332 24677899999998887421 1367888999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhcee---cc-ceeeEEEeCCCCccceeEEEEEEEeecce
Q psy16206 303 FAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITI---DG-MTGRINLDSQTGRRNSFSLEFVEYVSDQW 374 (821)
Q Consensus 303 ~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~---~G-~tG~i~fd~~~g~~~~~~~~i~~~~~~~~ 374 (821)
+++|+++++. ..+++.+.++|++.++ .+ ..|+++|++ ++++....+.|.++++++|
T Consensus 303 ~~~a~~~ag~---------------~~~~~~v~~aL~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~~ 362 (362)
T cd06343 303 LVKVLKQAGD---------------DLTRENIMKQAESLKDVLPDLLPGIRINTSP-DDHLPIEQMQLMRFEGGRW 362 (362)
T ss_pred HHHHHHHhCC---------------CCCHHHHHHHHHhCCCCCccccCccceecCc-cccccceeEEEEEEecCcC
Confidence 9999999872 2477899999999886 33 445999998 7667667788888887764
No 59
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=99.97 E-value=9.1e-30 Score=275.87 Aligned_cols=315 Identities=17% Similarity=0.178 Sum_probs=245.0
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||+++|++| +...+|+++|++++|++|+ +.|++|++++.| +++|+..+.+.+++|+++ +|++||||.++
T Consensus 1 ~iG~~~~~sG~~~~~g~~~~~g~~~a~~~iN~~gg--i~g~~l~~~~~D-~~~~~~~~~~~~~~li~~~~v~aiiG~~~s 77 (334)
T cd06347 1 KIGVNLPLTGDVAAYGQSEKNGAKLAVKEINAAGG--VLGKKIELVVED-NKSDKEEAANAATRLIDQDKVVAIIGPVTS 77 (334)
T ss_pred CeeEEecCCchhhhcCHhHHHHHHHHHHHHHhcCC--CCCeeEEEEEec-CCCChHHHHHHHHHHhcccCeEEEEcCCcc
Confidence 7999999999 5578999999999999998 678999999999 669999999999999998 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHH-HhCCCCEEEEEEecC-CchhHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVII-NDMDWDTFTIIYETH-DNLVYLQQV 152 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~-~~~~w~~v~ii~~~~-~~~~~~~~~ 152 (821)
..+.+++++++..+||+|+++++...+. ...+|+||+.|++..++.++++++ .+++|++|++|+.++ ++.....+.
T Consensus 78 ~~~~~v~~~~~~~~ip~i~~~~~~~~~~--~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~~~~~~~~~ 155 (334)
T cd06347 78 GATLAAGPIAEDAKVPMITPSATNPKVT--QGKDYVFRVCFIDPFQGTVMAKFATENLKAKKAAVLYDNSSDYSKGLAKA 155 (334)
T ss_pred HhHHHhHHHHHHCCCeEEcCCCCCCCcc--cCCCeEEEeeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCchhHHHHHH
Confidence 9999999999999999999876543322 224589999999988999999987 567999999999876 444333333
Q ss_pred HH-hcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecc
Q psy16206 153 LE-NAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLT 230 (821)
Q Consensus 153 ~~-~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 230 (821)
++ ... ..|.++.. ..++.+..|+.+.++++++.++++|++.+...+...+++++++.|+. ..|+.++
T Consensus 156 ~~~~~~-------~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~---~~i~~~~- 224 (334)
T cd06347 156 FKEAFK-------KLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTEVGLIAKQARELGIK---VPILGGD- 224 (334)
T ss_pred HHHHHH-------HcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhhHHHHHHHHHHcCCC---CcEEecc-
Confidence 32 222 33566654 45777778999999999999999999999999999999999999984 2455443
Q ss_pred cccccccccCcccccCCceeeEEEEeecC--CChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHH
Q psy16206 231 SYWINAHTVDFQDFQPGYANITTVRMINP--TNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQ 308 (821)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~ 308 (821)
.|.+. .. .........|+.....+.+ +++..++|.++|+++++. .++.++..+||++++++.|++
T Consensus 225 -~~~~~-~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----------~~~~~~~~~yda~~~~~~Al~ 291 (334)
T cd06347 225 -GWDSP-KL-EEAGGAAAEGVYFTTHFSADDPTPKAKKFVKAYKAKYGK----------EPDAFAALGYDAYYLLADAIE 291 (334)
T ss_pred -cccCH-HH-HHHHHHHhCCcEEecccCCCCCCHHHHHHHHHHHHHHCC----------CcchhHHHHHHHHHHHHHHHH
Confidence 22221 11 1111112344443333322 367789999999887732 367788999999999999999
Q ss_pred HhhccCCCCCCCCCCCCCCCCCchhHHHhhhhc-eeccceeeEEEeCCCCcccee
Q psy16206 309 SLGERKPLPTPLSCENPSSWQHGLGIGNLMKSI-TIDGMTGRINLDSQTGRRNSF 362 (821)
Q Consensus 309 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~~~G~tG~i~fd~~~g~~~~~ 362 (821)
+++ ..++..+.++|.+. +|+|++|.+.|++ +|+....
T Consensus 292 ~ag----------------~~~~~~v~~~l~~~~~~~g~~G~v~f~~-~g~~~~~ 329 (334)
T cd06347 292 RAG----------------STDPEAIRDALAKTKDFDGVTGKITIDE-NGNPVKS 329 (334)
T ss_pred HhC----------------CCCHHHHHHHHHhCCCcccceeeeEECC-CCCcCCC
Confidence 987 23678888898754 6999999999998 8876543
No 60
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=99.97 E-value=1.4e-29 Score=274.73 Aligned_cols=326 Identities=15% Similarity=0.139 Sum_probs=250.0
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||++.|++| .....|+++|++++|++++ ++|++|+++++| +++++..+.+.+++|+++ +|.+|+||.+|
T Consensus 1 ~IG~~~plsG~~a~~G~~~~~g~~~a~~~iN~~gg--i~G~~i~l~~~D-~~~~~~~a~~~a~~li~~~~V~~i~G~~~s 77 (340)
T cd06349 1 LIGVAGPLTGDNAQYGTQWKRAFDLALDEINAAGG--VGGRPLNIVFED-SKSDPRQAVTIAQKFVADPRIVAVLGDFSS 77 (340)
T ss_pred CeeEEecCCCcchhcCccHHHHHHHHHHHHHhhCC--cCCeEEEEEEeC-CCCChHHHHHHHHHHhccCCeEEEECCCcc
Confidence 7999999999 6688999999999999999 578999999999 669999999999999998 89999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHH-HhCCCCEEEEEEecCCchhHHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVII-NDMDWDTFTIIYETHDNLVYLQQVL 153 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~-~~~~w~~v~ii~~~~~~~~~~~~~~ 153 (821)
..+.++++++++.++|+|+++++...+ ....+|+||+.|++..+..++++++ ++++|+++++++.++++.......+
T Consensus 78 ~~~~a~~~~~~~~~vp~i~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~ 155 (340)
T cd06349 78 GVSMAASPIYQRAGLVQLSPTNSHPDF--TKGGDFIFRNSTSQAIEAPLLADYAVKDLGFKKVAILSVNTDWGRTSADIF 155 (340)
T ss_pred HhHHHhHHHHHhCCCeEEecCCCCCcc--ccCCCeEEEccCCcHHHHHHHHHHHHHHcCCcEEEEEecCChHhHHHHHHH
Confidence 999999999999999999986543321 3357899999999999999999986 5689999999999987543333333
Q ss_pred H-hcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 154 E-NAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 154 ~-~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
+ .+. ..|.++.. ..++++..||++.+.+|+++++++|++.+.+.+...+++++++.|+..+ ++..++
T Consensus 156 ~~~~~-------~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~- 224 (340)
T cd06349 156 VKAAE-------KLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISYYNDGAPIARQARAVGLDIP---VVASSS- 224 (340)
T ss_pred HHHHH-------HcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHcCCCCc---EEccCC-
Confidence 3 232 34566664 4577778999999999999999999999999999999999999998643 333221
Q ss_pred ccccccccCcccccCCceeeEEEEee--cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRMI--NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQS 309 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~ 309 (821)
+.+... .........|+.....+ ..+++..++|.++|+++++.. ++.++..+||++.++++|+++
T Consensus 225 -~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----------p~~~~~~~y~~~~~~~~a~~~ 291 (340)
T cd06349 225 -VYSPKF--IELGGDAVEGVYTPTAFFPGDPRPEVQSFVSAYEAKYGAQ----------PDAFAAQAYDAVGILAAAVRR 291 (340)
T ss_pred -cCCHHH--HHHhHHHhCCcEEecccCCCCCCHHHHHHHHHHHHHHCCC----------cchhhhhHHHHHHHHHHHHHH
Confidence 011111 11111123455544333 234677899999998887422 577889999999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCCchhHHHh-hhhceeccceeeEEEeCCCCccceeEEEEEEEeecc
Q psy16206 310 LGERKPLPTPLSCENPSSWQHGLGIGNL-MKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQ 373 (821)
Q Consensus 310 ~~~~~~~~~~~~c~~~~~~~~g~~l~~~-l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~ 373 (821)
++ ..+...+... +.+..+.|++|+++|++ ++++....+.++.+++++
T Consensus 292 ag----------------~~~~~~~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~g~ 339 (340)
T cd06349 292 AG----------------TDRRAARDGFAKAEDVYSGVTGSTKFDP-NTRRVIKRFVPLVVRNGK 339 (340)
T ss_pred hC----------------CCCHHHHHHHHHhccCcccceEeEEECC-CCCCccCceEEEEEeCCc
Confidence 87 2333333333 24455789999999998 734443578888877765
No 61
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=99.97 E-value=6.5e-29 Score=270.76 Aligned_cols=331 Identities=15% Similarity=0.099 Sum_probs=253.2
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||++.|+|| +.+.+|+++|+++||++|| +.|++|+++++| +.++|..+++++++|+.+ +|.+|+||.+|
T Consensus 1 kIG~~~plSG~~a~~g~~~~~g~~la~~~iN~~GG--i~G~~ielv~~D-~~~~p~~a~~~a~~li~~~~V~aiiG~~~s 77 (360)
T cd06357 1 RVGVLFSRTGVTAAIERSQRNGALLAIEEINAAGG--VLGRELEPVEYD-PGGDPDAYRALAERLLREDGVRVIFGCYTS 77 (360)
T ss_pred CeEEEEcCCCCchhccHHHHHHHHHHHHHHhhcCC--CCCeEEEEEEEC-CCCCHHHHHHHHHHHHhhCCCcEEEeCccH
Confidence 7999999998 7789999999999999999 568899999999 669999999999999986 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchh----HHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLV----YLQ 150 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~----~~~ 150 (821)
..+.++.++++..++|++++++... ....+++|++.++...+..++++++...+-+++++++.|+.+.. .+.
T Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~ 153 (360)
T cd06357 78 SSRKAVLPVVERHDALLWYPTLYEG----FEYSPNVIYTGAAPNQNSVPLADYLLRHYGKRVFLVGSNYIYPYESNRIMR 153 (360)
T ss_pred HHHHHHHHHHHhcCceEEeCCCccC----CcccCCEEEeCCCcHHHHHHHHHHHHhcCCcEEEEECCCCcchHHHHHHHH
Confidence 9999999999999999998754322 12346788888887777888999887766689999999887543 334
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEE
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
+.+++. |..+... .++.+ ..||.+++.+|++.++|+|++.+.+.++..+++|++++|+..+.... .
T Consensus 154 ~~~~~~----------G~~vv~~~~~~~~~~~~d~s~~v~~l~~~~pd~V~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~ 222 (360)
T cd06357 154 DLLEQR----------GGEVLGERYLPLGASDEDFARIVEEIREAQPDFIFSTLVGQSSYAFYRAYAAAGFDPARMPI-A 222 (360)
T ss_pred HHHHHc----------CCEEEEEEEecCCCchhhHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHcCCCccCcee-E
Confidence 444433 4555443 34444 89999999999999999999999999999999999999997543222 2
Q ss_pred ecccccccccccCcccccCCceeeEEEEee--cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHH
Q psy16206 228 SLTSYWINAHTVDFQDFQPGYANITTVRMI--NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAA 305 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~ 305 (821)
+.+ ..+..... .......|+.+...+ ..+++..++|.++|+++++.. .+++.+++.+||+++++++
T Consensus 223 ~~~--~~~~~~~~--~~g~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~g~~--------~~~~~~~~~~yda~~~l~~ 290 (360)
T cd06357 223 SLT--TSEAEVAA--MGAEAAAGHITAAPYFSSIDTPANRAFVARYRARFGED--------APVSACAEAAYFQVHLFAR 290 (360)
T ss_pred Eee--ccHHHHhh--cchHhhCCcEEecccccccCChhHHHHHHHHHHHcCCC--------CCCCcHHHHHHHHHHHHHH
Confidence 221 01111111 111223555554332 335788899999999988432 1246678999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEE-eecceEEEEE
Q psy16206 306 ALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEY-VSDQWKVLGT 379 (821)
Q Consensus 306 Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~-~~~~~~~vG~ 379 (821)
|+++++ ..+++.++++|++.+|+|+.|.+.|++ .+++......+.++ .+|++..+..
T Consensus 291 Al~~ag----------------~~~~~~v~~aL~~~~~~~~~g~~~f~~-~~~~~~~~~~~~~~~~~G~~~~~~~ 348 (360)
T cd06357 291 ALQRAG----------------SDDPEDVLAALLGFSFDAPQGPVRIDP-DNNHTYLWPRIARVNADGQFDIVRE 348 (360)
T ss_pred HHHHcC----------------CCCHHHHHHHhccCcccCCCcceEEeC-CCCeeeeeeEEEEEcCCCCEEEEEc
Confidence 999988 356789999999999999999999998 66655455666676 4555655543
No 62
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=99.97 E-value=5.6e-29 Score=268.51 Aligned_cols=317 Identities=11% Similarity=0.026 Sum_probs=239.9
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhc-CCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINK-DFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~-~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
|||++.|++| +...+|+++|++++|+ .++ +.|++|++++.| ++++|..+++++++|+++ +|.+|+||.+
T Consensus 1 ~IG~~~~lsG~~a~~G~~~~~g~~lav~~inn~~gg--i~G~~i~lv~~D-~~~~p~~a~~~~~~li~~~~V~avvG~~~ 77 (333)
T cd06328 1 KIGLITDLSGPLAAYGKQTLTGFMLGLEYATGGTMQ--VDGRPIEVIVKD-DAGNPEVAVSLARELIGDDGVDILVGSTS 77 (333)
T ss_pred CeEEEEecCCchhhhhHHHHHHHHHHHHHHHhcCCC--cCCEEEEEEEec-CCCChHHHHHHHHHHHHhcCCeEEEccCC
Confidence 7999999999 6788999999999955 555 678899999999 669999999999999999 9999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHH-HHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYL-QQV 152 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~-~~~ 152 (821)
|..+.++.+++++.++|+|++++++..++....++|+||+.+++..+..+++.++... ++++++++.++++.... +.+
T Consensus 78 S~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~g~~~~~~~ 156 (333)
T cd06328 78 SGVALAVLPVAEENKKILIVEPAAADSITGKNWNRYTFRTGRNSSQDAIAAAAALGKP-GKKIATLAQDYAFGRDGVAAF 156 (333)
T ss_pred cHHHHHHHHHHHHhCCcEEecCCCCchhhccCCCCcEEEecCChHHHHHHHHHHHHhc-CCeEEEEecCccccHHHHHHH
Confidence 9999999999999999999875543332333446899999988888888888877666 89999999998743333 333
Q ss_pred HHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChh-HHHHHHHHHHHccccCcceEEEEecc
Q psy16206 153 LENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMD-KTVTILKQAKEVHLMGDYQNYILSLT 230 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~-~~~~~l~~a~~~g~~~~~~~~i~~~~ 230 (821)
.+... ..|..+. ...++++..||.+.+.+|++.++|+|++...+. ....+++++.+.|+... ......
T Consensus 157 ~~~~~-------~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~V~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 226 (333)
T cd06328 157 KAALE-------KLGAAIVTEEYAPTDTTDFTPYAQRLLDALKKVLFVIWAGAGGPWPKLQQMGVLGYGIE---ITLAGD 226 (333)
T ss_pred HHHHH-------hCCCEEeeeeeCCCCCcchHHHHHHHHhcCCCEEEEEecCchhHHHHHHHhhhhcCCCe---EEeccc
Confidence 23332 3356665 446888889999999999999999998876555 56677888887776532 111110
Q ss_pred cccccccccCcccccCCceeeEEEEeec-CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy16206 231 SYWINAHTVDFQDFQPGYANITTVRMIN-PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQS 309 (821)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~ 309 (821)
...... .........+......+. +.++..+.|.++|+++++. .|+.+++.+||++.++++|+++
T Consensus 227 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~g~----------~p~~~~~~~y~a~~~l~~Ai~~ 292 (333)
T cd06328 227 ---ILANLT-MYKAGPGMSGASYYYHYFLPKNPVNDWLVEEHKARFGS----------PPDLFTAGGMSAAIAVVEALEE 292 (333)
T ss_pred ---ccCccc-cccccccccceeeeecCCCCCCHHHHHHHHHHHHHhCC----------CcchhhHHHHHHHHHHHHHHHH
Confidence 111111 111111233444333333 5677888999999998742 2678899999999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCcccee
Q psy16206 310 LGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSF 362 (821)
Q Consensus 310 ~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~ 362 (821)
++ ..+.+.+.++|++.+|+++.|+++|++.+++...+
T Consensus 293 ag----------------~~~~~~v~~aL~~~~~~~~~g~~~f~~~~~~~~~~ 329 (333)
T cd06328 293 TG----------------DTDTEALIAAMEGMSFETPKGTMTFRKEDHQALQP 329 (333)
T ss_pred hC----------------CCCHHHHHHHHhCCeeecCCCceEECcccchhhhc
Confidence 87 46788999999999999999999999623333333
No 63
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=99.97 E-value=1.8e-29 Score=273.09 Aligned_cols=314 Identities=13% Similarity=0.063 Sum_probs=246.0
Q ss_pred cEEEEeCCCc-------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 2 KIVGIFGPNE-------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 2 ~IG~i~~~~~-------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
|||++.|++| ..+..|+++|++++| ++ +.|++|+++++| ++++|..+++++++|+++ +|.+||||.+
T Consensus 1 ~IG~l~plsG~~~a~~g~~~~~g~~la~~~iN--gg--i~G~~v~l~~~D-~~~~p~~a~~~~~~l~~~~~V~aviG~~~ 75 (334)
T cd06327 1 KIGVLTDMSGVYADAEGKGSVEAAELAVEDFG--GG--VLGRPIELVVAD-HQNKADVAAAKAREWIDRDGVDMIVGGPN 75 (334)
T ss_pred CcccccCCCCcCccccCHHHHHHHHHHHHHhc--CC--ccCeEEEEEEec-CCCCchHHHHHHHHHHhhcCceEEECCcc
Confidence 6999999998 347899999999999 76 568899999999 669999999999999988 9999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVL 153 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~ 153 (821)
|..+.++.+++++.++|+|+++++...++.....+|+||+.|++..+++++++++...+++++++++.++.+.....+.+
T Consensus 76 s~~~~a~~~~~~~~~vp~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~g~~~~~~~ 155 (334)
T cd06327 76 SAVALAVQEVAREKKKIYIVTGAGSDDLTGKDCSPYTFHWAYDTYMLANGTAPALVKAGGKKWFFLTADYAFGHSLERDA 155 (334)
T ss_pred HHHHHHHHHHHHHhCceEEecCCCccccccCCCCCceEEccCChHHHHHHHHHHHHHhcCCeEEEEecchHHhHHHHHHH
Confidence 99999999999999999999865544334444579999999999999999999988878999999998887544443333
Q ss_pred Hh-cCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 154 EN-AHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 154 ~~-~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
+. .. ..|..+.. ..++...+||.+++.++++.++|+|++.+.+.++..++++++++|+.... .++...
T Consensus 156 ~~~~~-------~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~-- 225 (334)
T cd06327 156 RKVVK-------ANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLANAGADTVNAIKQAAEFGLTKGQ-KLAGLL-- 225 (334)
T ss_pred HHHHH-------hcCCEEcCcccCCCCCccHHHHHHHHHhCCCCEEEEeccchhHHHHHHHHHHhCCccCC-cEEEec--
Confidence 33 22 33565653 45777789999999999999999999999999999999999999986322 222222
Q ss_pred ccccccccCccccc-CCceeeEEEEee--cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDFQ-PGYANITTVRMI--NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQ 308 (821)
Q Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~ 308 (821)
... ..+.... ....|+.....+ ..+.+..++|.++|+++++.. ++.++..+||+++++++|++
T Consensus 226 --~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~----------p~~~~~~~Y~~~~~~~~A~~ 291 (334)
T cd06327 226 --LFL--TDVHSLGLDAAQGLYLTTAWYWDLPNDETRAFVKRFQAKYGKM----------PSMVQAGAYSAVLHYLKAVE 291 (334)
T ss_pred --ccH--HHHHhhchhhhcCeEEeeeccccCCCHHHHHHHHHHHHHHCcC----------CCcHHHHHHHHHHHHHHHHH
Confidence 111 1111111 123455554443 334778899999999988432 56788899999999999999
Q ss_pred HhhccCCCCCCCCCCCCCCCCCchhHHHhhhhce-eccceeeEEEeCCCCccc
Q psy16206 309 SLGERKPLPTPLSCENPSSWQHGLGIGNLMKSIT-IDGMTGRINLDSQTGRRN 360 (821)
Q Consensus 309 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~-~~G~tG~i~fd~~~g~~~ 360 (821)
+++ ..++..+.++|++.+ ++++.|+++|+..+|+..
T Consensus 292 ~ag----------------~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~ 328 (334)
T cd06327 292 AAG----------------TDDADKVVAKMKETPIYDLFAGNGYIRACDHQMV 328 (334)
T ss_pred HHC----------------CCChHHHHHhccccceeccCCCCceeeccccchh
Confidence 998 456778999999875 688999999975134433
No 64
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=99.97 E-value=2.6e-29 Score=273.45 Aligned_cols=324 Identities=18% Similarity=0.252 Sum_probs=258.2
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh-cCeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-EGIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-~~V~aiiGp~~ 73 (821)
|+||++.|++| .....|+++|++++|++|+ +.|++|+++++| +.+|+..+.+.+.+|+. ++|.+|+||.+
T Consensus 2 i~IG~~~~~sG~~a~~g~~~~~g~~~a~~~~N~~gg--i~G~~i~l~~~D-~~~~~~~a~~~~~~l~~~~~v~~vvg~~~ 78 (343)
T PF13458_consen 2 IKIGVLVPLSGPFAPYGQDFLRGAELAVDEINAAGG--INGRKIELVVYD-DGGDPAQAVQAARKLIDDDGVDAVVGPLS 78 (343)
T ss_dssp EEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTE--ETTEEEEEEEEE--TT-HHHHHHHHHHHHHTSTESEEEESSS
T ss_pred EEEEEEECCCChhhhhhHHHHHHHHHHHHHHHHhCC--cCCccceeeecc-CCCChHHHHHHHHHhhhhcCcEEEEecCC
Confidence 79999999999 6688999999999999988 668999999999 66999999999999999 59999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHH-hCCCCEEEEEEecCCch----hH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIN-DMDWDTFTIIYETHDNL----VY 148 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~-~~~w~~v~ii~~~~~~~----~~ 148 (821)
+..+.++.++++..++|+|++++... ...++|+||+.|++..++.++++++. +++.+++++++.++.+. ..
T Consensus 79 s~~~~~~~~~~~~~~ip~i~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~ 154 (343)
T PF13458_consen 79 SAQAEAVAPIAEEAGIPYISPSASSP----SPDSPNVFRLSPSDSQQAAALAEYLAKKLGAKKVAIVYPDDPYGRSLAEA 154 (343)
T ss_dssp HHHHHHHHHHHHHHT-EEEESSGGGG----TTTHTTEEESS--HHHHHHHHHHHHHHTTTTSEEEEEEESSHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCcEEEEeeccCC----CCCCCcEEEEeccccHHHHHHHHHHHHHcCCcEEEEEecCchhhhHHHHH
Confidence 99999999999999999999653322 46789999999999999999999864 58999999999998643 33
Q ss_pred HHHHHHhcCCCCCcCCCCCCeE-EEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEE
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSV-TIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v-~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
+++.+++.+ ..+ ....++.+..|+.+.+++|++.++++|++.+.+.+...+++++.+.|+..+.+....
T Consensus 155 ~~~~~~~~G----------~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (343)
T PF13458_consen 155 FRKALEAAG----------GKVVGEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDPADAAAFLRQLRQLGLKPPRIPLFG 224 (343)
T ss_dssp HHHHHHHTT----------CEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTHHHHHHHHHHHHHTTGCSCTEEEEE
T ss_pred HHHHHhhcC----------ceeccceecccccccchHHHHHHhhcCCCEEEEeccchhHHHHHHHHHhhccccccceeec
Confidence 444444444 455 456788888999999999999999999999999999999999999998754333332
Q ss_pred ecccccccccccCccccc-CCceeeEEEEeec--CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHH
Q psy16206 228 SLTSYWINAHTVDFQDFQ-PGYANITTVRMIN--PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFA 304 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a 304 (821)
+. .. ...+.... ....++.....+. .+++..++|.++|+++++.. ..++.++..+||++.+++
T Consensus 225 ~~----~~--~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--------~~~~~~~~~~yda~~~~~ 290 (343)
T PF13458_consen 225 TS----LD--DASLQQLGGDALEGVYIVSPWFPDPDSPAVKQFQERYRAAYGEE--------PPPSLYAAQGYDAARLLA 290 (343)
T ss_dssp GG----GS--SHHHHHHHGGGGTTEEEEESGGGTGGSHHHHHHHHHHHHHHSST--------GGTCHHHHHHHHHHHHHH
T ss_pred cc----cC--cHHHHHhhhhhccCceeecccCCCCCCHHHHHHHHHHHHHcCCC--------CCCchhHHHHHHHHHHHH
Confidence 22 11 11111211 1234565555443 35788899999999998432 136788999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeec
Q psy16206 305 AALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSD 372 (821)
Q Consensus 305 ~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~ 372 (821)
.|+++++ ..+++.+.++|++.+|+|+.|++.|++ .++.....+.|++++.+
T Consensus 291 ~al~~~g----------------~~~~~~v~~al~~~~~~g~~g~~~~~~-~~~~~~~~~~i~~v~~~ 341 (343)
T PF13458_consen 291 QALERAG----------------SLDREAVREALESLKYDGLFGPISFDP-PDHQANKPVYIVQVKSD 341 (343)
T ss_dssp HHHHHHT----------------SHHHHHHHHHHHTSEEEETTEEEEEET-TTSBEEEEEEEEEEETT
T ss_pred HHHHHhC----------------CCCHHHHHHHHHhCCCcccccceEEeC-CCCccccCeEEEEEecC
Confidence 9999987 578899999999999999999999988 77777899999999843
No 65
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=99.97 E-value=1.2e-28 Score=265.93 Aligned_cols=309 Identities=12% Similarity=0.118 Sum_probs=241.3
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||++.|++| +....++++|+++||+++| +.|++|+++++| +.++|..+.+.+++|+.+ +|.+|+|+.+|
T Consensus 1 ~IG~~~~lSG~~a~~G~~~~~g~~la~~~iNa~gG--i~Gr~v~lv~~D-~~~~p~~a~~~~~~Li~~~~V~aiiG~~~s 77 (334)
T cd06356 1 KVGSLEDRSGNFALYGTPKVHATQLAVDEINASGG--ILGREVELVDYD-TQSDNERYQQYAQRLALQDKVDVVWGGISS 77 (334)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCC--CCCceEEEEEEC-CCCCHHHHHHHHHHHHHhCCCCEEEeCcch
Confidence 7999999998 7789999999999999999 568899999999 559999999999999987 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchh----HHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLV----YLQ 150 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~----~~~ 150 (821)
..+.++.+++++.++|+|..+.... ....+|+||+.+++..++.++++++...+-+++++++.|+++.. .++
T Consensus 78 ~~~~a~~~~~~~~~vp~i~~~~~~~----~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~vail~~d~~~g~~~~~~~~ 153 (334)
T cd06356 78 ASREAIRPIMDRTKQLYFYTTQYEG----GVCDRNTFCTGATPAQQFSTLVPYMMEKYGKKVYTIAADYNFGQISAEWVR 153 (334)
T ss_pred HHHHHHHHHHHhcCceEEeCCCccC----CcccCCEEEeCCCcHHHHHHHHHHHHHccCCeEEEECCCchhhHHHHHHHH
Confidence 9999999999999999998633221 23468999999999999999999987765589999998887433 334
Q ss_pred HHHHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccc-cCcceEEEEe
Q psy16206 151 QVLENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHL-MGDYQNYILS 228 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~-~~~~~~~i~~ 228 (821)
+.+++. |..+. ...++.+..||++.+.+|++.++++|++...+.+...+++++++.|+ ..+ .+..
T Consensus 154 ~~~~~~----------G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~---~~~~ 220 (334)
T cd06356 154 KIVEEN----------GGEVVGEEFIPLDVSDFGSTIQKIQAAKPDFVMSILVGANHLSFYRQWAAAGLGNIP---MASS 220 (334)
T ss_pred HHHHHc----------CCEEEeeeecCCCchhHHHHHHHHHhcCCCEEEEeccCCcHHHHHHHHHHcCCccCc---eeee
Confidence 444444 45554 55788888999999999999999999998888889999999999999 222 1111
Q ss_pred cccccccccccCcccc-cCCceeeEEEEee--cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHH
Q psy16206 229 LTSYWINAHTVDFQDF-QPGYANITTVRMI--NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAA 305 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~ 305 (821)
. ..........+ ....+|+.....+ ..+.+..++|.++|+++++.. ..++.+++.+||++++++.
T Consensus 221 ~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--------p~~~~~~~~~y~a~~~~~~ 288 (334)
T cd06356 221 T----LGAQGYEHKRLKPPALKDMYATANYIEELDTPANKAFVERFRAKFPDA--------PYINEEAENNYEAIYLYKE 288 (334)
T ss_pred e----cccchhHHhccCchhcCCeEEecchhhhcCCHHHHHHHHHHHHHcCCC--------CCCCchhHHHHHHHHHHHH
Confidence 1 10000000111 1223555554433 234677899999999988432 0125678999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhh-ceeccceeeEEEeCCCCcc
Q psy16206 306 ALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKS-ITIDGMTGRINLDSQTGRR 359 (821)
Q Consensus 306 Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~-~~~~G~tG~i~fd~~~g~~ 359 (821)
|+++++ ..+++.+.++|++ .+|+|+.|+++|++ .++.
T Consensus 289 A~~~ag----------------~~~~~~v~~aL~~~~~~~~~~g~~~~~~-~~h~ 326 (334)
T cd06356 289 AVEKAG----------------TTDRDAVIEALESGLVCDGPEGKVCIDG-KTHH 326 (334)
T ss_pred HHHHHC----------------CCCHHHHHHHHHhCCceeCCCceEEEec-CCCc
Confidence 999998 4677899999996 57899999999998 5544
No 66
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=99.97 E-value=4.8e-29 Score=270.81 Aligned_cols=317 Identities=14% Similarity=0.095 Sum_probs=245.5
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCC-Cc--eEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcC
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALP-PD--IILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGP 71 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll-~~--~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp 71 (821)
|||++.|++| .....++++|++++|++|| ++ +| ++|+++++| ++++|..+.+.+++|+++ +|.+|+||
T Consensus 1 ~IG~l~plsG~~a~~g~~~~~g~~lA~~~iN~~GG-i~~~G~~~~iel~~~D-~~~~p~~a~~~~~~li~~~~v~~iiG~ 78 (347)
T cd06336 1 KIGFSGPLSGPAAAWGLPGLRGVQLAAEEINAAGG-IKVGGKKYKVEIVSYD-DKYDPAEAAANARRLVQQDGVKFILGP 78 (347)
T ss_pred CcceeccCcCcccccChhhHHHHHHHHHHHHhcCC-cccCCceeeEEEEEec-CCCCHHHHHHHHHHHHhhcCceEEEeC
Confidence 7999999999 5688999999999999998 54 34 589999999 559999999999999988 99999999
Q ss_pred CCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHH
Q psy16206 72 QSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQ 151 (821)
Q Consensus 72 ~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~ 151 (821)
.++..+.+ .+++++.++|+|+++++....+ ...++|+||+.|++..++.+++.++.+.+|++|++++.|+.+.....+
T Consensus 79 ~~s~~~~~-~~~~~~~~ip~i~~~~~~~~~~-~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~~~g~~~~~ 156 (347)
T cd06336 79 IGGGITAA-QQITERNKVLLLTAYSSDLSID-TAGNPLTFRVPPIYNVYGVPFLAYAKKPGGKKVALLGPNDAYGQPWVA 156 (347)
T ss_pred CCCchhhh-hhhhhhcCceEEeccCCccccc-ccCCceEEEecCCchhHHHHHHHHHhhcCCceEEEEccCCchhHHHHH
Confidence 99998888 9999999999999876544322 346789999999999999999999988999999999998875444433
Q ss_pred HHHh-cCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChh-HHHHHHHHHHHccccCcceEEEEe
Q psy16206 152 VLEN-AHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMD-KTVTILKQAKEVHLMGDYQNYILS 228 (821)
Q Consensus 152 ~~~~-~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~-~~~~~l~~a~~~g~~~~~~~~i~~ 228 (821)
.++. .. ..|.++. ...++.+..||++++.+|++.++++|++.+... ++..++++++++|+..+ ++..
T Consensus 157 ~~~~~l~-------~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~ 226 (347)
T cd06336 157 AYKAAWE-------AAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGGPSPAPAALVIKQARELGFKGG---FLSC 226 (347)
T ss_pred HHHHHHH-------HcCCEEeeecccCCCCcchHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHcCCCcc---EEec
Confidence 3332 22 3356665 446777789999999999999999999999988 99999999999998753 2221
Q ss_pred cccccccccccCcccc-cCCceeeEEEEeecC----CChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHH
Q psy16206 229 LTSYWINAHTVDFQDF-QPGYANITTVRMINP----TNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLF 303 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~ 303 (821)
.+ ..... ..... .....|+.....+.. +++..++|.++|+++++.. ++.++..+||++.++
T Consensus 227 ~~---~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----------p~~~~~~~y~~~~~~ 292 (347)
T cd06336 227 TG---DKYDE-LLVATGADFMEGVYFQFPDVDDPALAFPRAKAFVEEYKKRYGEP----------PNSEAAVSYDAVYIL 292 (347)
T ss_pred cC---CCchH-HHHHhcHHhhCceEEEeecccccccCCHHHHHHHHHHHHHHCCC----------CcHHHHHHHHHHHHH
Confidence 21 11110 01111 112345555544322 5777899999999988432 677889999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhh--------ceeccceeeEEEeCCCCccceeE
Q psy16206 304 AAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKS--------ITIDGMTGRINLDSQTGRRNSFS 363 (821)
Q Consensus 304 a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~--------~~~~G~tG~i~fd~~~g~~~~~~ 363 (821)
++|+++++. .+...+.+++.. ..|+++.|.+.||+ +|+...+.
T Consensus 293 ~~Al~~ag~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~ 343 (347)
T cd06336 293 KAAMEAAGS----------------VDDTAAVAALAAMLGVGKPAFGYARWWGKELFGV-NGALVGPW 343 (347)
T ss_pred HHHHHhcCC----------------CCcHHHHHHHhhccCCCcCccccccccccccccC-CCccccCc
Confidence 999999872 333445555432 56888999999999 99987544
No 67
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=99.97 E-value=8.4e-29 Score=267.58 Aligned_cols=311 Identities=14% Similarity=0.069 Sum_probs=242.5
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||++.|++| +....|+++|+++||+.|| +.|++|+++++| +++||..++..+.+|+.+ +|.+||||.+|
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gG--i~G~~i~l~~~D-~~~~p~~a~~~a~~Li~~~~v~aviG~~~s 77 (333)
T cd06358 1 RIGLLVPLSGPAGIFGPSCEAAAELAVEEINAAGG--ILGREVELVIVD-DGSPPAEAAAAAARLVDEGGVDAIIGWHTS 77 (333)
T ss_pred CeEEEecCcCchhhcchhHHHHHHHHHHHHHhcCC--cCCcEEEEEEEC-CCCChHHHHHHHHHHHHhCCCcEEEecCcH
Confidence 7999999998 6688999999999999999 578899999999 669999999999999998 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHH-HhCCCCEEEEEEecCCchhHHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVII-NDMDWDTFTIIYETHDNLVYLQQVL 153 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~-~~~~w~~v~ii~~~~~~~~~~~~~~ 153 (821)
..+.++.++++ .+||+|++++.+. ....+|+||+.+++..++.+++.++ +..+|++|+++++++.+...+.+.+
T Consensus 78 ~~a~a~~~~~~-~~vp~i~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~i~~~~~~~g~~~~~~~ 152 (333)
T cd06358 78 AVRNAVAPVVA-GRVPYVYTSLYEG----GECNPGVFLTGETPEQQLAPAIPWLAEEKGARRWYLIGNDYVWPRGSLAAA 152 (333)
T ss_pred HHHHHHHHHHh-cCceEEeCCCcCC----CCCCCCEEEcCCCcHHHHHHHHHHHHHhcCCCeEEEEeccchhhHHHHHHH
Confidence 99999999999 9999999754332 2346899999999888887777766 4579999999999887544333333
Q ss_pred H-hcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 154 E-NAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 154 ~-~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
+ ... ..|..+.. ..++++..||++.+.+|++.++|+|++.....+...+++++++.|+..+. +...+
T Consensus 153 ~~~~~-------~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~---~~~~~- 221 (333)
T cd06358 153 KRYIA-------ELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLSTLVGQDAVAFNRQFAAAGLRDRI---LRLSP- 221 (333)
T ss_pred HHHHH-------HcCCEEeeeeeecCChHHHHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHcCCCccC---ceeec-
Confidence 2 222 33566654 46888889999999999999999999998888888999999999997642 22110
Q ss_pred ccccccccCccccc-CCceeeEEEEee--cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDFQ-PGYANITTVRMI--NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQ 308 (821)
Q Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~ 308 (821)
. ++.. ...... ....|+.....+ ....+..++|.++|+++++.. ...++.++..+||+++++++|++
T Consensus 222 ~-~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~-------~~~~~~~~~~~yda~~~~~~A~~ 291 (333)
T cd06358 222 L-MDEN--MLLASGAEAAEGLYSSSGYFASLQTPANAAFLARYRARFGDD-------APPLNSLSESCYEAVHALAAAAE 291 (333)
T ss_pred c-cCHH--HHHhcChHhhCCcEEeccchhhcCCHHHHHHHHHHHHHcCCC-------CCCCChHHHHHHHHHHHHHHHHH
Confidence 0 1111 011111 123454443322 335788999999999988532 12356788899999999999999
Q ss_pred HhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCc
Q psy16206 309 SLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGR 358 (821)
Q Consensus 309 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~ 358 (821)
+++ ..++..+.++|++.+|+|++|.+.|++ ++.
T Consensus 292 ~ag----------------~~~~~~v~~al~~~~~~~~~G~~~~~~-~~~ 324 (333)
T cd06358 292 RAG----------------SLDPEALIAALEDVSYDGPRGTVTMRG-RHA 324 (333)
T ss_pred HhC----------------CCCHHHHHHHhccCeeeCCCcceEEcc-ccc
Confidence 987 356789999999999999999999997 644
No 68
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=99.97 E-value=1.7e-28 Score=266.12 Aligned_cols=321 Identities=13% Similarity=0.087 Sum_probs=250.4
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||++.|++| ..+..|+++|++++| ++ +.|++|+++++| +++++..+.+.+++|+.+ +|.+||||.++
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~~~--~~--i~G~~i~l~~~D-~~~~~~~~~~~~~~lv~~~~v~~iig~~~s 75 (336)
T cd06360 1 KVGLLLPYSGTYAALGEDITRGFELALQEAG--GK--LGGREVEFVVED-DEAKPDVAVEKARKLIEQDKVDVVVGPVHS 75 (336)
T ss_pred CeEEEEecccchHhhcHhHHHHHHHHHHHhC--CC--cCCEEEEEEEcC-CCCChHHHHHHHHHHHHHhCCcEEEccCcc
Confidence 7999999998 467899999999986 33 578999999999 558999999999999986 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchh-HHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLV-YLQQVL 153 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~-~~~~~~ 153 (821)
..+.++.+++++.++|+|+++++...+++...++|+||+.|++..++..+++++...+|+++++++.++.+.. ..+.+.
T Consensus 76 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~v~~l~~~~~~g~~~~~~~~ 155 (336)
T cd06360 76 GEALAMVKVLREPGTPLINPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGYKKVVTVAWDYAFGYEVVEGFK 155 (336)
T ss_pred HhHHHHHHHHHhcCceEEecCCCCccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCCCeEEEEeccchhhHHHHHHHH
Confidence 8888999999999999999865544334444578999999999999999999999999999999998776432 223333
Q ss_pred HhcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccc
Q psy16206 154 ENAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSY 232 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~ 232 (821)
+... ..|..+.. ..++...+||++++.+|++.++|+|++...+.++..+++|+++.|+.+. ..++.++.
T Consensus 156 ~~~~-------~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~-- 225 (336)
T cd06360 156 EAFT-------EAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFAGGDAIKFVKQYDAAGLKAK-IPLIGSGF-- 225 (336)
T ss_pred HHHH-------HcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEecccccHHHHHHHHHHcCCccC-CeEEeccc--
Confidence 3333 33456653 4577778999999999999999999999889999999999999999542 23443331
Q ss_pred cccccccCcccccCCceeeEEEEeec--CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHh
Q psy16206 233 WINAHTVDFQDFQPGYANITTVRMIN--PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSL 310 (821)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~ 310 (821)
+... ...+.......|++....+. .+++..+.|.++|+++++. .++.++..+||+++++++|++++
T Consensus 226 -~~~~-~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~~~----------~~~~~~~~~yda~~~~~~A~~~a 293 (336)
T cd06360 226 -LTDG-TTLGAAGEAAEGVITALHYADTLDNPANQAFVKAYRAAYPD----------TPSVYAVQGYDAGQALILALEAV 293 (336)
T ss_pred -ccCH-HHHHhhHhhhcCceeccccCCCCCCHHHHHHHHHHHHHhCC----------CccHHHHHHHHHHHHHHHHHHHh
Confidence 1111 11112222335555444432 3578899999999998843 36788999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEE
Q psy16206 311 GERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSL 364 (821)
Q Consensus 311 ~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~ 364 (821)
+.. ..+++.+.++|++.+|+|+.|+++|++ +|++..+.|
T Consensus 294 ~~~--------------~~~~~~v~~al~~~~~~~~~g~~~f~~-~~~~~~~~~ 332 (336)
T cd06360 294 GGD--------------LSDGQALIAAMAAAKIDSPRGPFTLDK-AHNPIQDNY 332 (336)
T ss_pred CCC--------------CCCHHHHHHHHhcCCccCCCcceEECC-CCCcccceE
Confidence 731 235678999999999999999999999 888875543
No 69
>KOG1056|consensus
Probab=99.97 E-value=1.7e-28 Score=274.88 Aligned_cols=360 Identities=15% Similarity=0.201 Sum_probs=281.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-----------------CeEEEEcCCCc
Q psy16206 12 EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-----------------GIAAIFGPQSI 74 (821)
Q Consensus 12 ~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-----------------~V~aiiGp~~s 74 (821)
-+...|+..|+|+||+ +. +++|.+|.+.+.| .|..+..|.+...+++.+ .|.++|||..|
T Consensus 59 i~r~eAml~al~~iN~-~~-lLp~~kLG~~i~D-TCs~~t~aleqsl~Fv~~~~~~~~~e~~c~~g~sp~v~~VIG~s~S 135 (878)
T KOG1056|consen 59 IQRLEAMLFALDEINN-PD-LLPNIKLGARILD-TCSRSTYALEQSLSFVRASLTSDDSEVRCPDGYSPPVVAVIGPSYS 135 (878)
T ss_pred HHHHHHHHHHHHHhcC-cc-cCCCceeeeeEee-ccCCcHHHHHhhHHHHHhcccCCCcceecCCCCCCceeEEeCCCCc
Confidence 4456799999999999 66 8999999999999 889999999988887743 38899999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchh-HHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLV-YLQQVL 153 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~-~~~~~~ 153 (821)
..+.+++.+..-++||+|+++++++.++++.+++||.|+.|+|..|++||++++++|+|++|..++.++++.+ +++++-
T Consensus 136 svsi~vanlLrlf~ipQisyaSts~~LSdk~ry~~F~RtVP~D~~Qa~Am~~il~~f~W~yVstv~s~~dYGE~Gieaf~ 215 (878)
T KOG1056|consen 136 SVSIAVANLLRLFLIPQISYASTSPDLSDKTRYDYFLRTVPSDVFQAQAMVDILKKFNWNYVSTVASEGDYGESGIEAFK 215 (878)
T ss_pred hHHHHHHHHHHhhcCceeccccCCcccccchhhhceeeecCChHHHHHHHHHHHHHhCeeEeeehhcCccchhhhHHHHH
Confidence 9999999999999999999988877779999999999999999999999999999999999999999888544 444444
Q ss_pred HhcCCCCCcCCCCCCeEEEEE-cC--CCCCChHHHHHHhhc-CCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEec
Q psy16206 154 ENAHDDDKEIRPGRPSVTIRQ-LP--PDTDDYRPLLKEIKN-SSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~~~-~~--~~~~d~~~~l~~lk~-~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
++.. ..|+++.... .+ .....|...++++.+ .+++++|+.+.+++++.++++|..+++++ .+.|+.++
T Consensus 216 ~~a~-------~~~iCIa~s~ki~~~~~~~~~~~~l~kl~~~~~a~vvV~F~~~~~~r~~~~aa~~~n~~g-~~~wiaSd 287 (878)
T KOG1056|consen 216 EEAA-------ERGICIAFSEKIYQLSIEQEFDCVLRKLLETPNARVVVVFCRGEDARRLLKAARRANLTG-EFLWIASD 287 (878)
T ss_pred HhHH-------hcCceEEehhhcccccchhHHHHHHHHHhhcCCCeEEEEecCcchHHHHHHHHHHhCCCc-ceEEEecc
Confidence 4444 5568886542 22 236778999999988 69999999999999999999999999986 47899999
Q ss_pred ccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhh---------------hhhhccccc-----------cc
Q psy16206 230 TSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWI---------------YEENERGRS-----------LN 283 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---------------~~~~~~~~~-----------~~ 283 (821)
+ ++......+.......|..++.+....-+.+++|.+..+ +++.=.... +.
T Consensus 288 ~---W~~~~~~~~~~e~~a~g~i~i~l~~~~v~~F~~y~~s~~p~nn~~n~w~~e~w~~~f~C~l~~~~~~~~~~~~~Ct 364 (878)
T KOG1056|consen 288 G---WASQNSPTEAPEREAEGAITIKLASPQVPGFDRYFQSLHPENNRRNPWFAEFWEDKFNCSLPNSAFKNENLIRLCT 364 (878)
T ss_pred h---hhccCChhhhhhhhhceeEEEEecCCcchhHHHHHHhcCccccccCcccchhhhhcccCCCCcccccchhhhhhcc
Confidence 5 443333333344456788888887777666666655433 222111000 00
Q ss_pred ccc--c-----ccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCC
Q psy16206 284 VRA--E-----TVKIEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQT 356 (821)
Q Consensus 284 ~~~--~-----~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~ 356 (821)
... . .-..-....+|||+.+|+||+.+.++........|.+... .+|..|.+.++++.|.|..|.+.||+ +
T Consensus 365 ~~e~~~~~~~~~q~~k~~~Vi~aVya~A~aLh~m~~~lc~~~~~~C~~m~~-~dg~~L~~~l~~vnF~~~~~~v~Fd~-~ 442 (878)
T KOG1056|consen 365 AVERITLDSAYEQDSKVQFVIDAVYAMAHALHNMHQDLCPGTSGLCSAMKA-IDGSLLLKYLLNVNFTGPAGSVRFDE-N 442 (878)
T ss_pred cchhhccccchhhhcccccHHHHHHHHHHHHHHHHHhhcCCccccCcCccc-cCHHHHHhhhheeEEecCCCceeecC-C
Confidence 000 0 0011234589999999999999975422245567877664 78999999999999999999999999 9
Q ss_pred CccceeEEEEEEEeec----ceEEEEEEecCCCcce
Q psy16206 357 GRRNSFSLEFVEYVSD----QWKVLGTWNTAFGLNH 388 (821)
Q Consensus 357 g~~~~~~~~i~~~~~~----~~~~vG~w~~~~gl~~ 388 (821)
||.. ..|+|++++.. .+..+|.|+....|++
T Consensus 443 gD~~-~~y~I~~~~~~~~~~~y~~vg~w~~~~~l~i 477 (878)
T KOG1056|consen 443 GDGP-GRYDILNYQLTNGSYTYKEVGYWSEGLSLNI 477 (878)
T ss_pred CCCc-cceeEEEeeccCCCccceeeeeecccccccc
Confidence 9987 88999888753 4899999999776654
No 70
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=99.97 E-value=1.2e-28 Score=266.73 Aligned_cols=321 Identities=14% Similarity=0.049 Sum_probs=242.4
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||++.|++| +.+.+|+++|+++||+.|| +.|++|+++++| ++++|..+++.+++|+.+ +|.+|+ +.+|
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iNa~GG--I~Gr~ielv~~D-~~~~p~~a~~~a~~Li~~~~V~~i~-~~~S 76 (351)
T cd06334 1 KVGLLADRTGPTAFVGIPYAAGFADYFKYINEDGG--INGVKLEWEECD-TGYEVPRGVECYERLKGEDGAVAFQ-GWST 76 (351)
T ss_pred CCCccccCCCcccccChhHHHHHHHHHHHHHHcCC--cCCeEEEEEEec-CCCCcHHHHHHHHHHhccCCcEEEe-cCcH
Confidence 7999999998 6789999999999999999 578999999999 669999999999999998 888865 5788
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCC-----CCEEEEEEecCCchhHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMD-----WDTFTIIYETHDNLVYL 149 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~-----w~~v~ii~~~~~~~~~~ 149 (821)
..+.++.+++++.+||+|++++++....+...++|+||+.|++..++.++++++...+ .++|++|++++.+....
T Consensus 77 ~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~~Fr~~~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~~g~~~ 156 (351)
T cd06334 77 GITEALIPKIAADKIPLMSGSYGATLADDGAVFPYNFPVGPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSPFGKEP 156 (351)
T ss_pred HHHHHhhHHHhhcCCcEEecccchhhccCCCCCCeeeeCCCCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCccchhh
Confidence 8899999999999999999876554434356689999999999999999999987754 79999999998753333
Q ss_pred HHHHHh-cCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEE
Q psy16206 150 QQVLEN-AHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 150 ~~~~~~-~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
.+.++. .. ..|..+. ...++.+.+||++++.+|++.++|+|++...+.++..+++|++++|+..+ ++.
T Consensus 157 ~~~~~~~~~-------~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~~~~~G~~~~---~~~ 226 (351)
T cd06334 157 IEALKALAE-------KLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKEAKRVGLDDK---FIG 226 (351)
T ss_pred HHHHHHHHH-------HcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccchHHHHHHHHHHcCCCce---EEE
Confidence 332222 22 3345555 44678778999999999999999999999999999999999999999432 443
Q ss_pred ecccccccccccCcccccCCceeeEEEEeec--CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHH
Q psy16206 228 SLTSYWINAHTVDFQDFQPGYANITTVRMIN--PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAA 305 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~ 305 (821)
++ ................|+.+...+. .+++..++|.++|+++++... . ....++.++..+||+++++++
T Consensus 227 ~~----~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~---~-~~~~~~~~~~~gy~a~~~l~~ 298 (351)
T cd06334 227 NW----WSGDEEDVKPAGDAAKGYKGVTPFAGGADDPVGKEIVKEVYDKGKGSG---N-DKEIGSVYYNRGVVNAMIMVE 298 (351)
T ss_pred ee----ccCcHHHHHHhhhhhcCcEEeecccCCCCchHHHHHHHHHHHccCCCC---C-cccccccHHHHHHHHHHHHHH
Confidence 33 1111111122222345655544433 367889999999998874320 0 012346788999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCC-------chhHHHhhhhceeccceeeEEEeC
Q psy16206 306 ALQSLGERKPLPTPLSCENPSSWQH-------GLGIGNLMKSITIDGMTGRINLDS 354 (821)
Q Consensus 306 Al~~~~~~~~~~~~~~c~~~~~~~~-------g~~l~~~l~~~~~~G~tG~i~fd~ 354 (821)
|++++++. ....... -+..++.+++....|+.|+++|.+
T Consensus 299 Al~~ag~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (351)
T cd06334 299 AIRRAQEK----------GGETTIAGEEQLENLKLDAARLEELGAEGLGPPVSVSC 344 (351)
T ss_pred HHHHHHHh----------cCCCCCcHHHHHHhhhhhhhhhhhcCcccccCCceecc
Confidence 99999853 1111111 123445566777889999999987
No 71
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=99.97 E-value=4.3e-28 Score=262.64 Aligned_cols=318 Identities=12% Similarity=0.076 Sum_probs=248.4
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||+++|++| ....+|+++|++++| ++ +.|++|++++.|+ .+++..+.+.+.+|+.+ +|.+||||.++
T Consensus 1 ~IG~~~~~sg~~~~~g~~~~~g~~~a~~~~~--~~--i~G~~i~l~~~d~-~~~~~~~~~~~~~l~~~~~v~~iig~~~s 75 (333)
T cd06332 1 KIGLLTTLSGPYAALGQDIRDGFELALKQLG--GK--LGGRPVEVVVEDD-ELKPDVAVQAARKLIEQDKVDVVVGPVFS 75 (333)
T ss_pred CeEEEeeccCchHhhhHHHHHHHHHHHHHhC--CC--cCCeEEEEEEecC-CCCHHHHHHHHHHHHHHcCCcEEEcCCcc
Confidence 7999999999 467899999999998 44 5789999999994 48999999999999988 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLE 154 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~ 154 (821)
..+.++.+.+++.++|+|++++....+.+...++++||+.|++..++..+++++...||+++++++.++.+.....+.+.
T Consensus 76 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~v~il~~~~~~~~~~~~~~~ 155 (333)
T cd06332 76 NVALAVVPSLTESGTFLISPNAGPSDLAGKLCSPNFFRTSWQNDQVHEAMGKYAADKGYKKVVIIAPDYAAGKDAVAGFK 155 (333)
T ss_pred HHHHHHHHHHhhcCCeEEecCCCCccccccCCCCcEEEeeCChHHhHHHHHHHHHHhCCceEEEEecCcchhHHHHHHHH
Confidence 88888899999999999998665443344445799999999999999999999999999999999987765444444443
Q ss_pred hcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccc
Q psy16206 155 NAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWI 234 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~ 234 (821)
... . +..+....++....|+.++++++++.++++|++...+..+..++++++++|+... ..++.++. |.
T Consensus 156 ~~~-------~-~~~~~~~~~~~~~~d~~~~i~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~--~~ 224 (333)
T cd06332 156 RTF-------K-GEVVEEVYTPLGQLDFSAELAQIRAAKPDAVFVFLPGGMAVNFVKQYDQAGLKKK-IPLYGPGF--LT 224 (333)
T ss_pred Hhh-------c-EEEeeEEecCCCCcchHHHHHHHHhcCCCEEEEecccchHHHHHHHHHHcCcccC-CceeccCC--CC
Confidence 333 2 3233334566667899999999999999999998887889999999999998542 33444331 11
Q ss_pred cccccCcccccCCceeeEEEEeecC--CChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhc
Q psy16206 235 NAHTVDFQDFQPGYANITTVRMINP--TNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGE 312 (821)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~ 312 (821)
+ . ...+.......+++....+.+ +++..++|.++|+++++.. +..++..+||++++++.|+++++.
T Consensus 225 ~-~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----------~~~~~~~~yda~~~~~~a~~~ag~ 292 (333)
T cd06332 225 D-Q-DTLPAQGDAAVGVLTALHWAPDLDNPANKRFVAAYKAAYGRV----------PSVYAAQGYDAAQLLDAALRAVGG 292 (333)
T ss_pred C-H-HHHHhhchhhcCeeeeeccCCCCCCHHHHHHHHHHHHHhCCC----------CcHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 1 111223333456665554433 4678899999999988432 577889999999999999999872
Q ss_pred cCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCcccee
Q psy16206 313 RKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSF 362 (821)
Q Consensus 313 ~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~ 362 (821)
. ..++..+.++|++.+|+|++|+++|++ +|+....
T Consensus 293 ~--------------~~~~~~v~~al~~~~~~~~~g~i~f~~-~~~~~~~ 327 (333)
T cd06332 293 D--------------LSDKDALRAALRAADFDSPRGPFKFNP-NHNPIQD 327 (333)
T ss_pred C--------------CCCHHHHHHHHhcCceecCccceeECC-CCCcccc
Confidence 1 245678999999999999999999999 8876544
No 72
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=99.97 E-value=3.5e-28 Score=264.06 Aligned_cols=319 Identities=13% Similarity=0.086 Sum_probs=241.4
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||++.|++| +...+|+++|++++|+++| +.|++|+++++| +.++|..+.+.+++|+++ +|.+|+||.++
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gG--i~G~~i~lv~~D-~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s 77 (347)
T cd06335 1 KIGVDADFSGGSAPSGVSIRRGARLAIDEINAAGG--VLGRKLELVERD-DRGNPARGLQNAQELAADEKVVAVLGGLHT 77 (347)
T ss_pred CeeeecCccCccccccHHHHHHHHHHHHHHHhcCC--cCCeEEEEEecc-CCCCcHHHHHHHHHHhccCCeEEEEcCCCC
Confidence 7999999999 6689999999999999998 678899999999 559999999999999998 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCC-CCCCccEEEEecChhhHHHHHHHHHHh-CCCCEEEEEEecCCchhHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFI-PTNGVHGVNVYPESHLISKGISVIIND-MDWDTFTIIYETHDNLVYLQQV 152 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~-~~~~~~~~r~~p~~~~~~~al~~~~~~-~~w~~v~ii~~~~~~~~~~~~~ 152 (821)
..+.+++++++..+||+|++.++...++. ...++|+||+.|++..++.++++++.. .+|++|+++|+++++.....+.
T Consensus 78 ~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~~Fr~~~~~~~~~~~~a~~~~~~~~~~~v~ii~~~~~~g~~~~~~ 157 (347)
T cd06335 78 PVALANLEFIQQNKIPLIGPWAAGTPITRNGAPPNYIFRVSADDSIQAPFLVDEAVKRGGFKKVALLLDNTGWGRSNRKD 157 (347)
T ss_pred HHHHhhhHHHHhcCCcEEecCCCCcccccCCCCCCCEEEeccChHHHHHHHHHHHHHhcCCCeEEEEeccCchhhhHHHH
Confidence 99999999999999999998655332232 245689999999999999999998754 5699999999998754433333
Q ss_pred H-HhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcce-EEEEec
Q psy16206 153 L-ENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQ-NYILSL 229 (821)
Q Consensus 153 ~-~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~-~~i~~~ 229 (821)
+ +... ..|+.+. ...++++..||++.+++|++.++++|++.+.+.+...+++|+++.|+..+.+ .|.+..
T Consensus 158 ~~~~~~-------~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 230 (347)
T cd06335 158 LTAALA-------ARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPEGAQIANGMAKLGWKVPIISHWGLSG 230 (347)
T ss_pred HHHHHH-------HcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChHHHHHHHHHHHcCCCCcEecccCCcC
Confidence 3 3333 3356665 4568877899999999999999999999999999999999999999854311 111111
Q ss_pred ccccccccccCcccccCCceeeEEEEee--c-CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHH
Q psy16206 230 TSYWINAHTVDFQDFQPGYANITTVRMI--N-PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAA 306 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~A 306 (821)
............|+.....+ . +.++..++|.++|+++++.... ....++.+++.+||+++++++|
T Consensus 231 --------~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~----~~~~~~~~~~~aYd~~~~l~~A 298 (347)
T cd06335 231 --------GNFIEGAGPAANDALMIQTFIFEPPSNPKAKAFLAAYHKKYPEKKP----ADIPAPVGAAHAYDAVHLLAAA 298 (347)
T ss_pred --------chhhhccchhhcCcEEEEeeccccCCCHHHHHHHHHHHHHhCCCcc----cccCcchhHHHHHHHHHHHHHH
Confidence 11111111223454443322 2 3578889999999998853310 0112456678899999999999
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhc--eeccceeeE--EEeCCCCcc
Q psy16206 307 LQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSI--TIDGMTGRI--NLDSQTGRR 359 (821)
Q Consensus 307 l~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~--~~~G~tG~i--~fd~~~g~~ 359 (821)
+++++ ..+.+.+.++|++. .++|+.|.. .|++ ..++
T Consensus 299 ~~~ag----------------~~~~~~v~~al~~~~~~~~G~~~~~~~~~~~-~~h~ 338 (347)
T cd06335 299 IKQAG----------------STDGRAIKRALENLKKPVEGLVKTYDKPFSK-EDHE 338 (347)
T ss_pred HHHhc----------------CCCHHHHHHHHHhccCCceeeecccCCCCCh-hhcc
Confidence 99997 23447899999865 467887744 5776 4433
No 73
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=99.96 E-value=8.3e-28 Score=261.90 Aligned_cols=331 Identities=9% Similarity=0.076 Sum_probs=244.7
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCc--eEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCC
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPD--IILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQ 72 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~--~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~ 72 (821)
|||.+.|++| .....++++|++++|..++ +.| ++|+++++| +.++|.++++++++|+++ +|.+|||+.
T Consensus 1 kIG~~~~lSG~~a~~G~~~~~~~~~~~~~in~g~~--i~G~~~~i~lv~~D-~~~~p~~a~~~a~~li~~d~v~~iiG~~ 77 (357)
T cd06337 1 KIGYVSPRTGPLAAFGEADPWVLETMRSALADGLV--VGGSTYEVEIIVRD-SQSNPNRAGLVAQELILTDKVDLLLAGG 77 (357)
T ss_pred CcceeccCcCcccccccchHHHHHHHHHHhcCCee--ECCceeEEEEEEec-CCCCHHHHHHHHHHHHhccCccEEEecC
Confidence 7999999998 5567899999999995543 344 689999999 669999999999999998 999999999
Q ss_pred CcchHHHHHHHhccCCCceeeeccCCCC--C---CC-CCCCccEEEEecChhhHHHHHHHHHHhCC-CCEEEEEEecCCc
Q psy16206 73 SIENRNIIESMCQMFDIPHVEAFWDPNK--Y---FI-PTNGVHGVNVYPESHLISKGISVIINDMD-WDTFTIIYETHDN 145 (821)
Q Consensus 73 ~s~~~~~v~~i~~~~~iP~is~~~~~~~--~---~~-~~~~~~~~r~~p~~~~~~~al~~~~~~~~-w~~v~ii~~~~~~ 145 (821)
+|..+.++++++++.+||+|++++.... + .. ...++|+||..+++..+.++++.+++..+ +++++++++++.+
T Consensus 78 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~k~v~ii~~~~~~ 157 (357)
T cd06337 78 TPDTTNPVSDQCEANGVPCISTMAPWQAWFFGRGGNPATGFKWTYHFFWGAEDVVATYVGMWKQLETNKKVGILYPNDPD 157 (357)
T ss_pred CcchhhHHHHHHHHhCCCeEEeccchhhhhccCCCCcccCCceeEEecCCHHHHHHHHHHHHHhCCCCceEEEEeecCch
Confidence 9999999999999999999987432110 0 11 12368999999999888889888888877 9999999999886
Q ss_pred hhHHHHHHHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceE
Q psy16206 146 LVYLQQVLENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQN 224 (821)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~ 224 (821)
...+.+.+.... +..+..|..+. ...++++.+||++++++|+++++|+|++.+.+.++..+++|++++|+..+.+.
T Consensus 158 g~~~~~~~~~~~---~~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~~~~~~~~~~~~~~~~~G~~~~~~~ 234 (357)
T cd06337 158 GNAFADPVIGLP---AALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGFAIPPDFATFWRQAAQAGFKPKIVT 234 (357)
T ss_pred hHHHHHhhhccc---HHHHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeCCCccHHHHHHHHHHHCCCCCCeEE
Confidence 555544332211 00013466665 45688889999999999999999999999999999999999999998654321
Q ss_pred EEEecccccccccccCcccccCCceeeEEEEeecCC--------ChhHHHhhhhhhhhhhcccccccccccccchhHHHH
Q psy16206 225 YILSLTSYWINAHTVDFQDFQPGYANITTVRMINPT--------NPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALM 296 (821)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 296 (821)
...+ ..... ..........+++....+.+. ++..++|.++|+++++.. +...+.++
T Consensus 235 --~~~~---~~~~~-~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~----------~~~~~~~~ 298 (357)
T cd06337 235 --IAKA---LLFPE-DVEALGDRGDGMSTEVWWSPSHPFRSSLTGQSAAELADAYEAATGRQ----------WTQPLGYA 298 (357)
T ss_pred --Eecc---ccCHH-HHHHhhhhhcCccccceeccCCCcccccCCccHHHHHHHHHHHhCCC----------ccCcchHH
Confidence 1111 10000 011111122344433222221 345789999999988533 34456789
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecc
Q psy16206 297 YDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQ 373 (821)
Q Consensus 297 YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~ 373 (821)
||+++++++|+++++. ..+++.|.++|++.+++++.|++.|++ + . ..+..++.+.++.
T Consensus 299 ~~~~~~l~~Ai~~Ags---------------~~d~~~v~~aL~~~~~~~~~G~~~f~~-~--~-~~~~~~~~~~~~~ 356 (357)
T cd06337 299 HALFEVGVKALVRADD---------------PDDPAAVADAIATLKLDTVVGPVDFGN-S--P-IKNVAKTPLVGGQ 356 (357)
T ss_pred HHHHHHHHHHHHHcCC---------------CCCHHHHHHHHHcCCcccceeeeecCC-C--C-CccccccccccCC
Confidence 9999999999999972 246778999999999999999999987 5 2 2345566666654
No 74
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=99.96 E-value=1.5e-27 Score=246.04 Aligned_cols=323 Identities=15% Similarity=0.127 Sum_probs=219.3
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
||||+++.++| ..+..|..||+++||++|| +.|++|+++++| .++|+...++.|.+|+.+ +|.+|||.++
T Consensus 1 ikVGiL~S~tG~~a~~e~~~~~~~~lAI~eINa~GG--vlG~~le~v~~D-p~Sd~~~ya~~A~~Li~~d~V~~ifGc~T 77 (363)
T PF13433_consen 1 IKVGILHSLTGTMAISERSLLDGALLAIEEINAAGG--VLGRQLEPVIYD-PASDPSTYAEKAEKLIREDGVRAIFGCYT 77 (363)
T ss_dssp --EEEE--SSSTTHHHHHHHHHHHHHHHHHHHCTTT--BTTB--EEEEE---TT-HHHHHHHHHHHHHHS---EEEE--S
T ss_pred CeEEEEEeCCCchHhhhHHHHHHHHHHHHHHHhcCC--cCCeEEEEEEEC-CCCCHHHHHHHHHHHHHhCCccEEEecch
Confidence 79999999999 6688999999999999999 668899999999 779999999999999986 9999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHH-HhCCCCEEEEEEecCCc----hhH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVII-NDMDWDTFTIIYETHDN----LVY 148 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~-~~~~w~~v~ii~~~~~~----~~~ 148 (821)
|++.++|.|+.++++-++..+.. . ..-...++++-+.+..+.+...+++++ .++|-+|+.+|.+|.-+ .+.
T Consensus 78 SasRKaVlPvvE~~~~LL~Yp~~--Y--EG~E~S~nviYtGa~PNQ~~~pl~~~~~~~~G~~r~~lvGSdYv~pre~Nri 153 (363)
T PF13433_consen 78 SASRKAVLPVVERHNALLFYPTQ--Y--EGFECSPNVIYTGAAPNQQLLPLIDYLLENFGAKRFYLVGSDYVYPRESNRI 153 (363)
T ss_dssp HHHHHHHHHHHHHCT-EEEE-S------------TTEEE-S--GGGTHHHHHHHHHHHS--SEEEEEEESSHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCceEEeccc--c--ccccCCCceEEcCCCchhhHHHHHHHHHhccCCceEEEecCCccchHHHHHH
Confidence 99999999999999999997642 1 123556788888888787888777766 56888999999999964 445
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEe
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILS 228 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~ 228 (821)
+++++++.+ |..+....+|-+.+||...+.+|++.+||+|+-...++....|++|.++.|+.... .-+++
T Consensus 154 ~r~~l~~~G---------gevvgE~Y~plg~td~~~ii~~I~~~~Pd~V~stlvG~s~~aF~r~~~~aG~~~~~-~Pi~S 223 (363)
T PF13433_consen 154 IRDLLEARG---------GEVVGERYLPLGATDFDPIIAEIKAAKPDFVFSTLVGDSNVAFYRAYAAAGLDPER-IPIAS 223 (363)
T ss_dssp HHHHHHHTT----------EEEEEEEE-S-HHHHHHHHHHHHHHT-SEEEEE--TTCHHHHHHHHHHHH-SSS----EEE
T ss_pred HHHHHHHcC---------CEEEEEEEecCCchhHHHHHHHHHhhCCCEEEEeCcCCcHHHHHHHHHHcCCCccc-CeEEE
Confidence 566666665 44455556777789999999999999999999999999999999999999998543 33333
Q ss_pred cccccccccccCcccccC-CceeeEEEEee--cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHH
Q psy16206 229 LTSYWINAHTVDFQDFQP-GYANITTVRMI--NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAA 305 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~ 305 (821)
.. .....+..+.. ...|......+ ..+++..++|+++|+++++.+ ..++.....+|-+|+++|+
T Consensus 224 ~~-----~~E~E~~~~g~~~~~Gh~~~~~YFqsidtp~N~~Fv~~~~~~~g~~--------~v~s~~~eaaY~~v~l~a~ 290 (363)
T PF13433_consen 224 LS-----TSEAELAAMGAEAAAGHYTSAPYFQSIDTPENQAFVARFRARYGDD--------RVTSDPMEAAYFQVHLWAQ 290 (363)
T ss_dssp SS-------HHHHTTS-HHHHTT-EEEES--TT-SSHHHHHHHHHHHTTS-TT------------HHHHHHHHHHHHHHH
T ss_pred Ee-----cCHHHHhhcChhhcCCcEEeehhhhhCCcHHHHHHHHHHHHHhCCC--------CCCCcHHHHHHHHHHHHHH
Confidence 31 11122222211 12455555543 457899999999999998654 2345555679999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe
Q psy16206 306 ALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV 370 (821)
Q Consensus 306 Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~ 370 (821)
|+++++ +.+.++++++|.+.+|+.+.|.+++|+ +.++......|-++.
T Consensus 291 Av~~ag----------------s~d~~~vr~al~g~~~~aP~G~v~id~-~n~H~~l~~rIg~~~ 338 (363)
T PF13433_consen 291 AVEKAG----------------SDDPEAVREALAGQSFDAPQGRVRIDP-DNHHTWLPPRIGRVN 338 (363)
T ss_dssp HHHHHT----------------S--HHHHHHHHTT--EEETTEEEEE-T-TTSBEEB--EEEEE-
T ss_pred HHHHhC----------------CCCHHHHHHHhcCCeecCCCcceEEcC-CCCeecccceEEEEc
Confidence 999999 678999999999999999999999999 777765555554444
No 75
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=99.95 E-value=2.2e-25 Score=241.69 Aligned_cols=312 Identities=10% Similarity=0.045 Sum_probs=236.3
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
||||++.|++| ....+|+++|+++||++++ +.|++|++...| +++|+..+.+.+++|+.+ +|.+|||+.+
T Consensus 1 i~IG~~~~lsG~~a~~g~~~~~~~~~a~~~iN~~gg--i~G~~v~l~~~D-~~~d~~~~~~~~~~l~~~~~v~avig~~~ 77 (336)
T cd06326 1 IVLGQSAPLSGPAAALGRAYRAGAQAYFDAVNAAGG--VNGRKIELVTLD-DGYEPERTVANTRKLIEDDKVFALFGYVG 77 (336)
T ss_pred CEEEEeccCCCcchhhHHHHHHHHHHHHHHHHhcCC--cCCceEEEEEeC-CCCChHHHHHHHHHHHhhcCcEEEEeCCC
Confidence 79999999999 5688999999999999988 678999999999 668999999999999997 9999999998
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCch-hHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNL-VYLQQV 152 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~-~~~~~~ 152 (821)
+..+.++.+++...++|+|+++++...++ ....+++||+.|++...+..+++++.++||+++++++.++.+. ...+.+
T Consensus 78 s~~~~~~~~~~~~~~iP~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~~~~~~~~~~~~~~ 156 (336)
T cd06326 78 TPTTAAALPLLEEAGVPLVGPFTGASSLR-DPPDRNVFNVRASYADEIAAIVRHLVTLGLKRIAVFYQDDAFGKDGLAGV 156 (336)
T ss_pred chhHHHHHHHHHHcCCeEEEecCCcHHhc-CCCCCceEEeCCChHHHHHHHHHHHHHhCCceEEEEEecCcchHHHHHHH
Confidence 88788888999999999999854433212 2346799999999999999999999999999999999876532 222223
Q ss_pred HHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 153 LENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
.+... ..|..+. ...++.+..|+.+++.++++.++++|++......+..++++++++|+..+- .+. ..
T Consensus 157 ~~~~~-------~~G~~~~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i~~~~~~G~~~~~-~~~-~~-- 225 (336)
T cd06326 157 EKALA-------ARGLKPVATASYERNTADVAAAVAQLAAARPQAVIMVGAYKAAAAFIRALRKAGGGAQF-YNL-SF-- 225 (336)
T ss_pred HHHHH-------HcCCCeEEEEeecCCcccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHhcCCCCcE-EEE-ec--
Confidence 23332 3345443 345666678999999999999999999999888899999999999995431 121 11
Q ss_pred ccccccccCcccccCCceeeEEEEe----ecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRM----INPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAAL 307 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al 307 (821)
...... .........++..... ...+.+..++|.++|+++++. .+++.++..+||+++++++|+
T Consensus 226 --~~~~~~-~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---------~~~~~~~~~~y~~~~~~~~a~ 293 (336)
T cd06326 226 --VGADAL-ARLLGEYARGVIVTQVVPNPWSRTLPIVREYQAAMKAYGPG---------APPSYVSLEGYIAAKVLVEAL 293 (336)
T ss_pred --cCHHHH-HHHhhhhhcceEEEEEecCccccCCHHHHHHHHHHHhhCCC---------CCCCeeeehhHHHHHHHHHHH
Confidence 111110 1111122345443221 122367788999999887632 135677889999999999999
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhcee-ccceeeEEEeC
Q psy16206 308 QSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITI-DGMTGRINLDS 354 (821)
Q Consensus 308 ~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~-~G~tG~i~fd~ 354 (821)
++++. ..+++.++++|++.+. ++..|.+.|++
T Consensus 294 ~~~g~---------------~~~~~~v~~al~~~~~~~~~g~~~~~~~ 326 (336)
T cd06326 294 RRAGP---------------DPTRESLLAALEAMGKFDLGGFRLDFSP 326 (336)
T ss_pred HHcCC---------------CCCHHHHHHHHHhcCCCCCCCeEEecCc
Confidence 99872 2467899999999875 55556999986
No 76
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=99.94 E-value=2.2e-25 Score=240.36 Aligned_cols=298 Identities=15% Similarity=0.046 Sum_probs=218.9
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~ 75 (821)
|||++.|++| ..+.+|+++|++++| |++++++++|+ .+ |..+.+.+++|+.++|.+||||.+|.
T Consensus 1 kIG~l~plsG~~a~~g~~~~~g~~lA~~~in--------G~~i~l~~~D~-~~-~~~a~~~~~~li~~~V~~iiG~~~s~ 70 (336)
T cd06339 1 RIALLLPLSGPLASVGQAIRNGFLAALYDLN--------GASIELRVYDT-AG-AAGAAAAARQAVAEGADIIVGPLLKE 70 (336)
T ss_pred CeEEEEcCCCcchHHHHHHHHHHHHHHHhcc--------CCCceEEEEeC-CC-cccHHHHHHHHHHcCCCEEEccCCHH
Confidence 7999999999 556899999999999 34799999994 47 99999999999988999999999999
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHH-H
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVL-E 154 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~-~ 154 (821)
.+.++++++.+.+||+|++++++.. . ..+++||+.+++..++.+++.++...|+++++++++++++.....+.+ +
T Consensus 71 ~~~a~~~~~~~~~ip~i~~~~~~~~---~-~~~~~f~~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~f~~ 146 (336)
T cd06339 71 NVAALAAAAAELGVPVLALNNDESV---A-AGPNLFYFGLSPEDEARRAAEYARSQGKRRPLVLAPDGAYGQRVADAFRQ 146 (336)
T ss_pred HHHHHHhhhccCCCCEEEccCCccc---c-CCCCEEEecCChHHHHHHHHHHHHhcCccceEEEecCChHHHHHHHHHHH
Confidence 9999999999999999998655443 1 268999999999999999999998889999999998876443333322 2
Q ss_pred hcCCCCCcCCCCCCeE-EEEEcCCCCCChHHHHHHhhcC---------------------CCcEEEEeCChh-HHHHHHH
Q psy16206 155 NAHDDDKEIRPGRPSV-TIRQLPPDTDDYRPLLKEIKNS---------------------SESHILLDCSMD-KTVTILK 211 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v-~~~~~~~~~~d~~~~l~~lk~~---------------------~~~~ivl~~~~~-~~~~~l~ 211 (821)
... ..|..+ ....++.+..||++.+++|++. ++|.|++.+.+. ++..+.+
T Consensus 147 ~~~-------~~G~~vv~~~~~~~~~~d~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~ 219 (336)
T cd06339 147 AWQ-------QLGGTVVAIESYDPSPTDLSDAIRRLLGVDDSEQRIAQLKSLESEPRRRQDIDAIDAVALPDGEARLIKP 219 (336)
T ss_pred HHH-------HcCCceeeeEecCCCHHHHHHHHHHHhccccchhhhhhhhhcccCccccCCCCcEEEEecChhhhhhhcc
Confidence 222 224444 4567888889999999999998 999999888876 7777777
Q ss_pred HHHHccccCcceEEEEecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhccccccccccccc-c
Q psy16206 212 QAKEVHLMGDYQNYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETV-K 290 (821)
Q Consensus 212 ~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~ 290 (821)
++...+.......++.+++ |.+... .........|+..... ......+|.++|+++++.. | +
T Consensus 220 ~~~~~~~~~~~~~~~g~~~--~~~~~~--~~~~g~~~~g~~~~~~---~~~~~~~f~~~y~~~~~~~----------p~~ 282 (336)
T cd06339 220 QLLFYYGVPGDVPLYGTSR--WYSGTP--APLRDPDLNGAWFADP---PWLLDANFELRYRAAYGWP----------PLS 282 (336)
T ss_pred hhhhhccCcCCCCEEEecc--ccCCCC--CcccCcccCCcEEeCC---CcccCcchhhhHHHHhcCC----------CCc
Confidence 7776654111223454442 221111 1111112234332222 2222348999999887433 5 7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhh-hhceeccceeeEEEeCCCCccc
Q psy16206 291 IEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLM-KSITIDGMTGRINLDSQTGRRN 360 (821)
Q Consensus 291 ~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l-~~~~~~G~tG~i~fd~~~g~~~ 360 (821)
.+++.+|||+.+++.++++.+. .+ ++ +...|+|++|.++|++ +|+..
T Consensus 283 ~~~a~~YDa~~l~~~~~~~~~~----------------~~------al~~~~~~~g~~G~~~f~~-~g~~~ 330 (336)
T cd06339 283 RLAALGYDAYALAAALAQLGQG----------------DA------ALTPGAGFSGVTGVLRLDP-DGVIE 330 (336)
T ss_pred hHHHHHHhHHHHHHHHHHcccc----------------cc------ccCCCCccccCcceEEECC-CCeEE
Confidence 8899999999999988776641 11 33 3346999999999998 88653
No 77
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=99.93 E-value=8.3e-25 Score=234.34 Aligned_cols=298 Identities=8% Similarity=0.012 Sum_probs=212.9
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCC
Q psy16206 9 PNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFD 88 (821)
Q Consensus 9 ~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~ 88 (821)
+.+....+|++||+++||+.|| + .|++|+++..| . ++|..+++.+++|+.++|.+|+|+.+|..+.++.+++.+.+
T Consensus 8 ~~~~~~~~ga~lAveeiNaaGG-v-~G~~ielv~~D-~-~~p~~a~~~a~~Li~~~V~~vvG~~~S~~~~Av~~~a~~~~ 83 (347)
T TIGR03863 8 PPEDRGLDGARLAIEDNNTTGR-F-LGQTFTLDEVA-V-RTPEDLVAALKALLAQGVRFFVLDLPAAALLALADAAKAKG 83 (347)
T ss_pred CCcchHHHHHHHHHHHHHhhCC-c-CCceEEEEEcc-C-CCHHHHHHHHHHHHHCCCCEEEecCChHHHHHHHHHHHhCC
Confidence 3446678999999999999999 4 47799999997 5 68999999999999879999999999999999999999999
Q ss_pred CceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHh-cCCCCCcCCCCC
Q psy16206 89 IPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLEN-AHDDDKEIRPGR 167 (821)
Q Consensus 89 iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~g 167 (821)
+|+|+++++...++...+++|+||+.|++..++++++.++...+.|++++|+.++++...+.+.+++ .. ..|
T Consensus 84 vp~i~~~a~~~~lt~~~c~~~~Fr~~~~~~~~~~ala~~~~~~g~kkvaii~~~~~~g~~~~~~~~~~~~-------~~G 156 (347)
T TIGR03863 84 ALLFNAGAPDDALRGADCRANLLHTLPSRAMLADALAQYLAAKRWRRILLIQGPLPADALYADAFRRSAK-------RFG 156 (347)
T ss_pred cEEEeCCCCChHHhCCCCCCCEEEecCChHhHHHHHHHHHHHcCCCEEEEEeCCCcccHHHHHHHHHHHH-------HCC
Confidence 9999987654443545678899999999999999999999888999999999888754444333222 22 234
Q ss_pred CeEE-EEEcCCCC----CChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccccCcc
Q psy16206 168 PSVT-IRQLPPDT----DDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVDFQ 242 (821)
Q Consensus 168 ~~v~-~~~~~~~~----~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~ 242 (821)
..+. ...++.+. +|+.......+.+++|+|++.....+....+... .+. .. . ++
T Consensus 157 ~~vv~~~~~~~~~~~~~~d~s~~~~~~~~s~pDvv~~~~~~~~~~~~~~~~--~~~-~~--~-~~--------------- 215 (347)
T TIGR03863 157 AKIVAERPFTFSGDPRRTDQSEVPLFTQGADYDVVVVADEAGEFARYLPYA--TWL-PR--P-VA--------------- 215 (347)
T ss_pred CEEEEeEEeccCCchhhhhcccCceeecCCCCCEEEEecchhhHhhhcccc--ccc-cc--c-cc---------------
Confidence 5554 44565432 3444323334457999999876554432211100 000 00 0 00
Q ss_pred cccCCceeeEEE-EeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy16206 243 DFQPGYANITTV-RMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKPLPTPLS 321 (821)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~ 321 (821)
...|+... ..+..+.+..++|.++|+++++.. |+.+++.+||++++++.|+++++
T Consensus 216 ----g~~G~~~~~~~~~~~~~~~~~f~~~f~~~~g~~----------p~~~~a~aY~av~~~a~Ai~~AG---------- 271 (347)
T TIGR03863 216 ----GSAGLVPTAWHRAWERWGATQLQSRFEKLAGRP----------MTELDYAAWLAVRAVGEAVTRTR---------- 271 (347)
T ss_pred ----cccCccccccCCcccchhHHHHHHHHHHHhCCC----------CChHHHHHHHHHHHHHHHHHHhc----------
Confidence 00111111 122334567789999999988443 56778899999999999999999
Q ss_pred CCCCCCCCCchhHHHhhhhcee--cccee-eEEEeCCCCccceeEEEEEEE
Q psy16206 322 CENPSSWQHGLGIGNLMKSITI--DGMTG-RINLDSQTGRRNSFSLEFVEY 369 (821)
Q Consensus 322 c~~~~~~~~g~~l~~~l~~~~~--~G~tG-~i~fd~~~g~~~~~~~~i~~~ 369 (821)
+.++.+++++|++.++ .++.| +++|++.||+.. .+..+.+.
T Consensus 272 ------s~d~~aV~~aL~~~~~~~~~~~g~~~~~R~~Dhq~~-~~~~~~~~ 315 (347)
T TIGR03863 272 ------SADPATLRDYLLSDEFELAGFKGRPLSFRPWDGQLR-QPVLLVHP 315 (347)
T ss_pred ------CCCHHHHHHHHcCCCceecccCCCcceeeCCCcccc-cceEeccc
Confidence 6899999999998876 57887 699996244444 33334443
No 78
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=99.93 E-value=2.1e-24 Score=229.61 Aligned_cols=216 Identities=21% Similarity=0.288 Sum_probs=184.0
Q ss_pred cEEEEeCCCc--------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh-----cCeEEE
Q psy16206 2 KIVGIFGPNE--------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-----EGIAAI 68 (821)
Q Consensus 2 ~IG~i~~~~~--------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-----~~V~ai 68 (821)
+||++++.++ .....++..|++++|+. +++++|++.++| .++++..+...+.+++. +++.||
T Consensus 1 ~iG~~f~~~~~~~~~~~~~~~~~~~~~~~~~~n~~----~~~~~l~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~v~ai 75 (298)
T cd06269 1 RIGGLFPLHSGGRFGEEGAFRAAAALFAVEEINND----LPNTTLGYEIYD-SCCSPSDAFSAALDLCSLLEKSRGVVAV 75 (298)
T ss_pred CEEEEeecccccccCHHHHHHHHHHHHHHHHHhcc----CCCCeeeeEEEe-cCCChHHHHHHHHHHHhcCCCCCceEEE
Confidence 5899999763 44677899999999987 578899999999 55788888888888776 399999
Q ss_pred EcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhH
Q psy16206 69 FGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVY 148 (821)
Q Consensus 69 iGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~ 148 (821)
|||.++..+.+++++++.+++|+|++++++..++++..+++++|+.|++..+++++++++++++|++|+++|+++++...
T Consensus 76 iG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~~v~~~~~~~~~ 155 (298)
T cd06269 76 IGPSSSSSAEAVASLLGALHIPQISYSATSPLLSDKEQFPSFLRTVPSDSSQAQAIVDLLKHFGWTWVGLVYSDDDYGRR 155 (298)
T ss_pred ECCCCchHHHHHHHHhccCCCcEEecccCchhhcChhhCCCeEecCCCcHHHHHHHHHHHHHCCCeEEEEEEecchhhHH
Confidence 99999999999999999999999999777555455567899999999999999999999999999999999999997777
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEE-EcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEE
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIR-QLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
+.+.++... +..+.++... .++....++...+++++..++++||+++.+.++..+++++.++||+ ..++|++
T Consensus 156 ~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~-~~~~~i~ 228 (298)
T cd06269 156 LLELLEEEL------EKNGICVAFVESIPDGSEDIRRLLKELKSSTARVIVVFSSEEDALRLLEEAVELGMM-TGYHWII 228 (298)
T ss_pred HHHHHHHHH------HHCCeeEEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHcCCC-CCeEEEE
Confidence 766666554 1235566543 4555457899999999999999999999989999999999999999 8899999
Q ss_pred ec
Q psy16206 228 SL 229 (821)
Q Consensus 228 ~~ 229 (821)
++
T Consensus 229 ~~ 230 (298)
T cd06269 229 TD 230 (298)
T ss_pred EC
Confidence 88
No 79
>KOG1055|consensus
Probab=99.93 E-value=7e-26 Score=245.02 Aligned_cols=355 Identities=14% Similarity=0.146 Sum_probs=261.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcchHHHHHHHhccCCC
Q psy16206 12 EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIENRNIIESMCQMFDI 89 (821)
Q Consensus 12 ~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~~~~~v~~i~~~~~i 89 (821)
+.+..|+++|++++|+++. |++|++|+++..|++ |++.+++++..+++.. .-..++|. |+.....++.-+..++.
T Consensus 61 ~~~~Pav~~Al~~vn~~~~-ilp~y~L~~~~~ds~-C~~~~g~k~~fdll~~~p~k~mll~G-Cs~v~~~iaea~~~w~l 137 (865)
T KOG1055|consen 61 QACLPAVELALEDVNSRSD-ILPGYRLKLIHHDSE-CDPGQGTKALYDLLYNGPNKLMLLGG-CSSVTTLIAEAAKMWNL 137 (865)
T ss_pred ccccHHHHHHHHHhhcccc-ccCCcEEEEEecccc-CCccccHHHHHHHHHcCCchheeccC-CCCcchHHHhhccccce
Confidence 7899999999999999998 999999999999965 8999999999999988 55566777 99999999999999999
Q ss_pred ceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCe
Q psy16206 90 PHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPS 169 (821)
Q Consensus 90 P~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 169 (821)
-+++++++.+.+++...+|++||+.|+..........++++++|++|+.++.+..-...-++.+.... ...+..
T Consensus 138 ~~lsy~~ssp~ls~r~rfp~~frt~PS~~~~np~rl~l~~~~~w~rvgt~~q~e~~f~~~~~dl~~~~------~~~~ie 211 (865)
T KOG1055|consen 138 IVLSYGASSPALSNRKRFPTFFRTHPSANAHNPTRIKLLKKFGWKRVATLQQTEEVFSSTLNDLEARL------KEAGIE 211 (865)
T ss_pred eeecccCCCccccchhhcchhhhcCCccccCCcceeeechhcCcceeeeeeeehhhhcchHHHHHHhh------hccccE
Confidence 99999877665688899999999999999999999999999999999999998873333333333332 133455
Q ss_pred EEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecc--ccccccccc----Cccc
Q psy16206 170 VTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLT--SYWINAHTV----DFQD 243 (821)
Q Consensus 170 v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~--~~~~~~~~~----~~~~ 243 (821)
+..+. ....|....++.++...+|+|+-.-.-..++.+++++++.+|-+..|.|++..- ..|++.... ..++
T Consensus 212 iv~~q--sf~~dp~~~vk~l~~~D~RiI~g~f~~~~Arkv~C~~Y~~~myg~ky~w~~~g~y~d~w~ev~~~~~~ctvee 289 (865)
T KOG1055|consen 212 IVFRQ--SFSSDPADSVKNLKRQDARIIVGLFYETEARKVFCEAYKERLYGRKYVWFLIGWYADNWWEITHPSENCTVEE 289 (865)
T ss_pred EEEee--ccccCHHHHHhhccccchhheeccchHhhhhHHHHhhchhhcccceeEEEEEEeeccchhhccCchhhhhHHH
Confidence 54332 224566778899999999999988889999999999999999999999998762 123322111 1122
Q ss_pred ccCCceeeEEEEeecC--------CChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCC
Q psy16206 244 FQPGYANITTVRMINP--------TNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKP 315 (821)
Q Consensus 244 ~~~~~~~~~~~~~~~~--------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~ 315 (821)
+..+.+|-.++..... .....++|...+.+...... ........+.++||++|++|+|++++.....
T Consensus 290 m~~A~eg~~s~e~~pl~~~~~~tisg~T~~~~l~~~~~~r~~~~-----~~~~~~~~~~~ayd~Iwa~ala~n~t~e~l~ 364 (865)
T KOG1055|consen 290 MTEAAEGHITTEFVMLSPANITTISGMTAQEFLEELTKYRKRHP-----EETGGFQEAPLAYDAIWALALALNKTMEGLG 364 (865)
T ss_pred HHHHHhhheeeeeeccccccceeeccchhHHHHHHHHhhhcccc-----ccccCcccCchHHHHHHHHHHHHHHHHhcCC
Confidence 2222334344333211 12234566666654432210 1122456788999999999999999875311
Q ss_pred C-CCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCC
Q psy16206 316 L-PTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFG 385 (821)
Q Consensus 316 ~-~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g 385 (821)
- ...+..-+-....-.+.+.+++.+++|+|++|.+.|. +|+|. .-..|-|+++|.++++|+|+....
T Consensus 365 ~~~~~l~~f~y~~k~i~d~i~eamn~tsF~GvsG~V~F~--~geR~-a~t~ieQ~qdg~y~k~g~Yds~~D 432 (865)
T KOG1055|consen 365 RSHVRLEDFNYNNKTIADQIYEAMNSTSFEGVSGHVVFS--NGERM-ALTLIEQFQDGKYKKIGYYDSTKD 432 (865)
T ss_pred ccceeccccchhhhHHHHHHHHHhhcccccccccceEec--chhhH-HHHHHHHHhCCceEeecccccccc
Confidence 0 1111111111122356899999999999999999999 58886 666788999999999999998643
No 80
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=99.92 E-value=2.2e-23 Score=226.37 Aligned_cols=300 Identities=11% Similarity=0.014 Sum_probs=223.9
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||+++|++| ..+.+|+++|++++|+.|+ +.|++|++++.| +++++..+.+.+.+|+.+ +|.+|||+.++
T Consensus 1 ~IGv~~p~sG~~a~~g~~~~~g~~~a~~~~N~~Gg--i~G~~i~lv~~D-~~~~~~~~~~~~~~li~~~~V~~iig~~~s 77 (341)
T cd06341 1 KIGLLYPDTGVAAVSFPGARAGADAAAGYANAAGG--IAGRPIEYVWCD-DQGDPASAAACARDLVEDDKVVAVVGGSSG 77 (341)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCC--cCCceEEEEEec-CCCChhHHHHHHHHHHHhcCceEEEecccc
Confidence 7999999997 7789999999999999998 678899999999 558999999999999999 99999999998
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC-chhH-HHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD-NLVY-LQQV 152 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~-~~~~-~~~~ 152 (821)
....++ +++...++|+|+++++.... . ..++.|++.+++..+..++++++...+.+++++++.++. +... ...+
T Consensus 78 ~~~~~~-~~~~~~~ip~v~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~i~~~~~~~g~~~~~~~ 153 (341)
T cd06341 78 AGGSAL-PYLAGAGIPVIGGAGTSAWE--L-TSPNSFPFSGGTPASLTTWGDFAKDQGGTRAVALVTALSAAVSAAAALL 153 (341)
T ss_pred cchhHH-HHHhhcCCceecCCCCCchh--h-cCCCeEEecCCCcchhHHHHHHHHHcCCcEEEEEEeCCcHHHHHHHHHH
Confidence 877776 88899999999986543321 1 157789999999889999999999999999999987654 3322 2223
Q ss_pred HHhcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 153 LENAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
.+... .+|..+.. ..++.+..|+.+.+.++++.++|+|++......+..++++++++|+..+... ....
T Consensus 154 ~~~~~-------~~G~~v~~~~~~~~~~~d~~~~~~~i~~~~pdaV~~~~~~~~a~~~~~~~~~~G~~~~~~~-~~~~-- 223 (341)
T cd06341 154 ARSLA-------AAGVSVAGIVVITATAPDPTPQAQQAAAAGADAIITVLDAAVCASVLKAVRAAGLTPKVVL-SGTC-- 223 (341)
T ss_pred HHHHH-------HcCCccccccccCCCCCCHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCCCEEE-ecCC--
Confidence 33332 34555543 3456667899999999999999999999888899999999999999765321 1111
Q ss_pred ccccccccCcccccCCceeeEEEEeec---CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRMIN---PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQ 308 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~ 308 (821)
.+.. ..........|+.....+. .+.+..++|.+.+++..... ..+++.+++.+||+++++++|++
T Consensus 224 --~~~~--~~~~~g~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-------~~~~~~~~~~~yda~~~~~~a~~ 292 (341)
T cd06341 224 --YDPA--LLAAPGPALAGVYIAVFYRPFESGTPAVALYLAAMARYAPQL-------DPPEQGFALIGYIAADLFLRGLS 292 (341)
T ss_pred --CCHH--HHHhcCcccCceEEEeeeccccCCCHHHHHHHHHHHHhCCCC-------CCCcchHHHHHHHHHHHHHHHHH
Confidence 1111 1122223345655554433 35677777776554322111 13478889999999999999999
Q ss_pred HhhccCCCCCCCCCCCCCCCCCchh-HHHhhhhceec
Q psy16206 309 SLGERKPLPTPLSCENPSSWQHGLG-IGNLMKSITID 344 (821)
Q Consensus 309 ~~~~~~~~~~~~~c~~~~~~~~g~~-l~~~l~~~~~~ 344 (821)
+++. ..+++. ++++|++++..
T Consensus 293 ~ag~---------------~~~~~~~v~~al~~~~~~ 314 (341)
T cd06341 293 GAGG---------------CPTRASQFLRALRAVTDY 314 (341)
T ss_pred hcCC---------------CCChHHHHHHHhhcCCCC
Confidence 9982 134566 99999988743
No 81
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=99.91 E-value=6.3e-23 Score=218.23 Aligned_cols=276 Identities=20% Similarity=0.170 Sum_probs=208.9
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||+++|++| .....|+++|++++|++++ +.|+++++++.| .++++..+.+.+++++.+ +|.+||||.++
T Consensus 1 ~IG~i~p~~g~~~~~~~~~~~~~~~a~~~~n~~~g--~~g~~~~~~~~d-~~~~~~~~~~~~~~l~~~~~v~~iig~~~~ 77 (299)
T cd04509 1 KIGVLFPLSGPYAEYGAFRLAGAQLAVEEINAKGG--IPGRKLELVIYD-DQSDPARALAAARRLCQQEGVDALVGPVSS 77 (299)
T ss_pred CeeEEEcCCCcchhcCHHHHHHHHHHHHHHHhcCC--CCCcEEEEEEec-CCCCHHHHHHHHHHHhcccCceEEEcCCCc
Confidence 7999999987 5688999999999999987 778999999999 558999999999999999 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLE 154 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~ 154 (821)
..+.++.++++..+||+|++.+......++..+++++++.|++..++..+++++.+++|+++++++.++.........++
T Consensus 78 ~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~iv~~~~~~~~~~~~~~~ 157 (299)
T cd04509 78 GVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNWKKVAILYDDDSYGRGLLEAFK 157 (299)
T ss_pred HHHHHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHH
Confidence 88889999999999999999655433233456889999999999999999999999999999999988764333333332
Q ss_pred h-cCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccc
Q psy16206 155 N-AHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSY 232 (821)
Q Consensus 155 ~-~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~ 232 (821)
+ .. ..|..+.. ..++.+.+++...++++++.++++|++.+.+..+..+++++++.|+. .++.|+..+.
T Consensus 158 ~~~~-------~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~-~~~~~i~~~~-- 227 (299)
T cd04509 158 AAFK-------KKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQAAEAGLT-GGYPILGITL-- 227 (299)
T ss_pred HHHH-------HcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccchHHHHHHHHHHHcCCC-CCCcEEeccc--
Confidence 2 22 33455543 34655567899999999988899999988889999999999999998 7788998772
Q ss_pred cccccccCcccccCCceeeEEEEeecC--CChhHHHhh---hhhhhhhhcccccccccccccchhHHHHHHHHHH
Q psy16206 233 WINAHTVDFQDFQPGYANITTVRMINP--TNPHIRSIM---NGWIYEENERGRSLNVRAETVKIEAALMYDAVYL 302 (821)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~ 302 (821)
...............++.+...+.. +.+..+.|. ..+++.. ...++.+++++||++++
T Consensus 228 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~yda~~~ 290 (299)
T cd04509 228 --GLSDVLLEAGGEAAEGVLTGTPYFPGDPPPESFFFVRAAAREKKKY----------EDQPDYFAALAYDAVLL 290 (299)
T ss_pred --ccCHHHHHHhHHhhcCcEEeeccCCCCCChHHHHHHhHHHHHHHHh----------CCCCChhhhhhcceeee
Confidence 1111111112222345555544332 233333333 2333332 23477899999999987
No 82
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=99.90 E-value=5.1e-22 Score=212.80 Aligned_cols=274 Identities=14% Similarity=0.067 Sum_probs=204.9
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|||+++|++| .....|+++|+++||+ ++ ++|+++++++.| +++++..+.+.+.+|+.+ +|.+|||+.++
T Consensus 1 ~IG~~~~lsG~~~~~g~~~~~g~~~a~~~iN~-gg--i~g~~i~l~~~d-~~~~~~~a~~~~~~li~~~~v~~vig~~~s 76 (312)
T cd06333 1 KIGAILSLTGPAASLGIPEKKTLELLPDEINA-GG--IGGEKVELIVLD-DGSDPTKAVTNARKLIEEDKVDAIIGPSTT 76 (312)
T ss_pred CeeEEeecCCcchhhCHHHHHHHHHHHHHHhc-CC--cCCeEEEEEEec-CCCCHHHHHHHHHHHHhhCCeEEEECCCCC
Confidence 7999999998 6678999999999999 87 678999999999 658999999999999987 99999999988
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCch-hHHHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNL-VYLQQVL 153 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~-~~~~~~~ 153 (821)
..+.++.+++...++|+|+++.+... . ....+|+||+.|++...+..+++++...||+++++++.++... ...+.+.
T Consensus 77 ~~~~~~~~~~~~~~vP~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vail~~~~~~~~~~~~~~~ 154 (312)
T cd06333 77 PATMAVAPVAEEAKTPMISLAPAAAI-V-EPKRKWVFKTPQNDRLMAEAILADMKKRGVKTVAFIGFSDAYGESGLKELK 154 (312)
T ss_pred HHHHHHHHHHHhcCCCEEEccCCccc-c-CCCCCcEEEcCCCcHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHH
Confidence 87788889999999999998654332 1 2346789999999999999999999999999999999876532 2223333
Q ss_pred HhcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccc
Q psy16206 154 ENAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSY 232 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~ 232 (821)
+... ..|..+.. ..++....|+...+.++++.++++|++......+..++++++++|+..+ ++.+++
T Consensus 155 ~~~~-------~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~pdaIi~~~~~~~~~~~~~~l~~~g~~~p---~~~~~~-- 222 (312)
T cd06333 155 ALAP-------KYGIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGSGTPAALPAKNLRERGYKGP---IYQTHG-- 222 (312)
T ss_pred HHHH-------HcCCEEEEEEeeCCCCcCHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHHHHcCCCCC---EEeecC--
Confidence 3332 33566543 4566666789999999998899999998888788889999999998644 222221
Q ss_pred cccccccCcccccCCceeeEEEE-------eec---CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHH
Q psy16206 233 WINAHTVDFQDFQPGYANITTVR-------MIN---PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYL 302 (821)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~ 302 (821)
+.... -.........|+.... ... +.++..++|.++|+++++.. ++..+++.+||++++
T Consensus 223 -~~~~~-~~~~~g~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~f~~~~~~~~g~~---------~~~~~~~~~Yda~~~ 291 (312)
T cd06333 223 -VASPD-FLRLAGKAAEGAILPAGPVLVADQLPDSDPQKKVALDFVKAYEAKYGAG---------SVSTFGGHAYDALLL 291 (312)
T ss_pred -cCcHH-HHHHhhHhhcCcEeecccceeeeeCCCCCcchHHHHHHHHHHHHHhCCC---------CCCchhHHHHHHHHH
Confidence 11110 0111111223443221 111 12457899999999987322 267789999999999
Q ss_pred HH
Q psy16206 303 FA 304 (821)
Q Consensus 303 ~a 304 (821)
++
T Consensus 292 ~~ 293 (312)
T cd06333 292 LA 293 (312)
T ss_pred HH
Confidence 98
No 83
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=99.90 E-value=2e-21 Score=199.75 Aligned_cols=322 Identities=14% Similarity=0.163 Sum_probs=237.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCceEEEE----------EEEEecCCC-hhHHHHHHHHHhhc--CeEEEEcCCCcchHH
Q psy16206 12 EEVATAFEIAVRRINKDFKALPPDIILEP----------IVQHVENYD-SLHTAKLMCNATSE--GIAAIFGPQSIENRN 78 (821)
Q Consensus 12 ~~~~~a~~lAv~~iN~~~~~ll~~~~l~~----------~~~D~~~~~-~~~a~~~a~~li~~--~V~aiiGp~~s~~~~ 78 (821)
+.++.|++.|++.++++.. ..|..+++ ++++.+|++ .-+++++..+|..+ .-++++||.|..++.
T Consensus 18 ~~v~~av~~a~~~~~~~~~--~~g~~f~~~a~~~~~~~~~y~~~~C~sstceg~~~l~~l~~~~~~gcv~lGP~CtYat~ 95 (380)
T cd06369 18 KFVKEAVEEAIEIVAERLA--EAGLNVTVNANFEGFNTSLYRSRGCRSSTCEGVELLKKLSVTGRLGCVLLGPSCTYATF 95 (380)
T ss_pred HHHHHHHHHHHHHHHhhhh--ccCceEEEEEeeeccccceeccCCCCcccchHHHHHHHHHhcCccCcEEEcCccceehh
Confidence 6789999999999988653 56777777 777767664 67888888888876 788999999999999
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHH------HhCCCCEEEEEEecCC-------c
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVII------NDMDWDTFTIIYETHD-------N 145 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~------~~~~w~~v~ii~~~~~-------~ 145 (821)
.+..+...+++|+||.++-... -..++++-|+.|++..++..+.++. .+++|++.. ||.++. +
T Consensus 96 ~~~~~~~~~~~P~ISaGsfgls---cd~k~~LTR~~pparK~~~~~~~f~~~~~~~~~~~W~~ay-vyk~~~~~edCf~~ 171 (380)
T cd06369 96 QMVDDEFNLSLPIISAGSFGLS---CDYKENLTRLLPPARKISDFFVDFWKEKNFPKKPKWETAY-VYKKQENTEDCFWY 171 (380)
T ss_pred hhhhhhhcCCCceEeccccccC---CCchhhhhhcCchHHHHHHHHHHHHhcccccCCCCCceeE-EEcCCCCccceeeE
Confidence 9999999999999997543221 3345689999999999999999999 489998666 887763 4
Q ss_pred hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEE
Q psy16206 146 LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNY 225 (821)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~ 225 (821)
..+++...+..+ ..+....+-...+++.+.|+.++ ...|+||+++++.+.+.++.+ ++...+|++
T Consensus 172 i~al~a~~~~f~----------~~~~~~~~l~~~~~~~~il~~~~-~~sRIiImCG~p~~ir~lm~~----~~~~gDYVf 236 (380)
T cd06369 172 INALEAGVAYFS----------SALKFKELLRTEEELQKLLTDKN-RKSNVIIMCGTPEDIVNLKGD----RAVAEDIVI 236 (380)
T ss_pred hHhhhhhhhhhh----------hcccceeeecCchhHHHHHHHhc-cCccEEEEeCCHHHHHHHHhc----CccCCCEEE
Confidence 677776666554 22332222333577888888876 688999999999999999986 444568888
Q ss_pred EEeccccccccccc-CcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccc-hhHHHHHHHHHHH
Q psy16206 226 ILSLTSYWINAHTV-DFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVK-IEAALMYDAVYLF 303 (821)
Q Consensus 226 i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~YDAv~~~ 303 (821)
+..+ +-.... +-........+++.+++..++.+.++++ ..+ ..... .+++..||||+++
T Consensus 237 ~~ID----lF~~sy~~d~~a~~amqsVLvIT~~~p~~~~~~~~-----~~f----------n~~l~~~~aa~fyDaVLLY 297 (380)
T cd06369 237 ILID----LFNDVYYENTTSPPYMRNVLVLTLPPRNSTNNSSF-----TTD----------NSLLKDDYVAAYHDGVLLF 297 (380)
T ss_pred EEEe----cccchhccCcchHHHHhceEEEecCCCCCcccccC-----CCC----------CcchHHHHHHHHHHHHHHH
Confidence 8766 211111 1111222346778777766655444331 001 01122 8899999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe--ecceEEEEEEe
Q psy16206 304 AAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV--SDQWKVLGTWN 381 (821)
Q Consensus 304 a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~--~~~~~~vG~w~ 381 (821)
|+||++..+. .+. ..+..+.+.|++.+|+|++|.+.+|+ +|+|. .+|.++... .++++.||.|+
T Consensus 298 a~AL~EtL~~-----------G~~-~~~~~I~~~m~NrTF~GitG~V~IDe-NGDRd-~dfsLl~ms~~tg~y~vV~~y~ 363 (380)
T cd06369 298 GHVLKKFLES-----------QEG-VQTFSFINEFRNISFEGAGGPYTLDE-YGDRD-VNFTLLYTSTDTSKYKVLFEFD 363 (380)
T ss_pred HHHHHHHHHh-----------CCC-CCcHHHHHHHhCcceecCCCceEeCC-CCCcc-CceEEEEeeCCCCCeEEEEEEE
Confidence 9999998742 122 23388999999999999999999999 99996 777776664 47799999999
Q ss_pred cCCCcc
Q psy16206 382 TAFGLN 387 (821)
Q Consensus 382 ~~~gl~ 387 (821)
...+..
T Consensus 364 t~~n~t 369 (380)
T cd06369 364 TSTNKT 369 (380)
T ss_pred CCCCee
Confidence 965543
No 84
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=99.88 E-value=1.1e-20 Score=200.77 Aligned_cols=275 Identities=18% Similarity=0.162 Sum_probs=207.7
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~ 75 (821)
|||+++|++| .....|+++|++++|++++ +.|+++++++.| +++++..+.+.++++++++|.+||||.++.
T Consensus 1 ~ig~~~p~sg~~~~~~~~~~~g~~~a~~~~n~~gg--~~g~~v~~~~~d-~~~~~~~~~~~~~~l~~~~v~~iig~~~~~ 77 (298)
T cd06268 1 KIGVLLPLSGPLAALGEPVRNGAELAVEEINAAGG--ILGRKIELVVED-TQGDPEAAAAAARELVDDGVDAVIGPLSSG 77 (298)
T ss_pred CeeeeecCcCchhhcChhHHHHHHHHHHHHHhcCC--CCCeEEEEEEec-CCCCHHHHHHHHHHHHhCCceEEEcCCcch
Confidence 6999999986 6788999999999999988 778999999999 558999999999999999999999999998
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCC-CCEEEEEEecCCchhHHHH-HH
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMD-WDTFTIIYETHDNLVYLQQ-VL 153 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~-w~~v~ii~~~~~~~~~~~~-~~ 153 (821)
.+.++.+++...+||+|++.+......+ ..++++|++.|++..+++++++++...+ |+++++++.++.......+ +.
T Consensus 78 ~~~~~~~~~~~~~ip~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~ 156 (298)
T cd06268 78 VALAAAPVAEEAGVPLISPGATSPALTG-KGNPYVFRTAPSDAQQAAALADYLAEKGKVKKVAIIYDDYAYGRGLAAAFR 156 (298)
T ss_pred hHHhhHHHHHhCCCcEEccCCCCccccc-CCCceEEEcccCcHHHHHHHHHHHHHhcCCCEEEEEEcCCchhHHHHHHHH
Confidence 8888999999999999998665432122 3578999999999999999999999888 9999999988763322323 32
Q ss_pred HhcCCCCCcCCCCCCeEEEE-EcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccc
Q psy16206 154 ENAHDDDKEIRPGRPSVTIR-QLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSY 232 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~~-~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~ 232 (821)
+... ..|..+... .++.+..++.+.++++++.++++|++.+.+..+..+++++.+.|+ ...|+..+.
T Consensus 157 ~~~~-------~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~-- 224 (298)
T cd06268 157 EALK-------KLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGGDAALFLKQAREAGL---KVPIVGGDG-- 224 (298)
T ss_pred HHHH-------HcCCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHcCC---CCcEEecCc--
Confidence 2332 335555433 455556789999999999999999999888899999999999998 345665552
Q ss_pred cccccccCcccccCCceeeEEEEeecC--CChhHHHhh-hhhhhhhhcccccccccccccchhHHHHHHHHHHHH
Q psy16206 233 WINAHTVDFQDFQPGYANITTVRMINP--TNPHIRSIM-NGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFA 304 (821)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a 304 (821)
..... ..........|+.....+.+ ..+....|. ++|+++++. +++.++..+||++++++
T Consensus 225 -~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~y~~~~~~~ 287 (298)
T cd06268 225 -AAAPA-LLELAGDAAEGVLGTTPYAPDDDDPAAAAFFQKAFKAKYGR----------PPDSYAAAAYDAVRLLA 287 (298)
T ss_pred -cCCHH-HHHhhhHhhCCcEEeccCCCCCCChhhhHHHHHHHHHHhCC----------CcccchHHHHHHHHHHc
Confidence 11111 11112222345555554332 233444554 666666532 37888999999999997
No 85
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=99.85 E-value=1.4e-21 Score=206.19 Aligned_cols=226 Identities=17% Similarity=0.199 Sum_probs=173.5
Q ss_pred chhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHH----Hc---CCeEEEEEecCCccc
Q psy16206 396 DKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIAN----EL---NFTYKFVLERENTYG 467 (821)
Q Consensus 396 ~~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~----~l---~~~~~~~~~~~~~~g 467 (821)
.+.++.+.+++.|+|++.. ++|||.+.+++| ++ ||++||+++|++ ++ ++++++++.
T Consensus 30 ~~~l~~i~~~g~L~Vg~~~--------~~pP~~f~~~~g--~~~G~didl~~~ia~~l~~~lg~~~~~~~~v~~------ 93 (302)
T PRK10797 30 GSTLDKIAKNGVIVVGHRE--------SSVPFSYYDNQQ--KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI------ 93 (302)
T ss_pred ccHHHHHHhCCeEEEEEcC--------CCCCcceECCCC--CEeeecHHHHHHHHHHHHHhhCCCCceEEEEEc------
Confidence 3678899999999999998 899999976554 78 999998888776 45 477777754
Q ss_pred ccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHH
Q psy16206 468 TLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMAT 547 (821)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~ 547 (821)
+|..++.+|..|++|++++++++|++|.+.++||.||+..+.++++++++. ..+ .+.+...+..+
T Consensus 94 -------~~~~~i~~L~~G~~Di~~~~~~~t~eR~~~~~fS~Py~~~~~~lv~r~~~~-i~s-l~dL~Gk~V~v------ 158 (302)
T PRK10797 94 -------TSQNRIPLLQNGTFDFECGSTTNNLERQKQAAFSDTIFVVGTRLLTKKGGD-IKD-FADLKGKAVVV------ 158 (302)
T ss_pred -------ChHhHHHHHHCCCccEEecCCccCcchhhcceecccEeeccEEEEEECCCC-CCC-hHHcCCCEEEE------
Confidence 578899999999999998889999999999999999999999999998754 222 22333222111
Q ss_pred HHHHHHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhc----cCCcccccCchhHHHHHHhccCceEEEecccchh
Q psy16206 548 AYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMES----SRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIE 623 (821)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~ 623 (821)
.. . ..+......+.. ....+.+.+..+++.+|.. |++|+++.|..++.
T Consensus 159 -~~-----------------------g---s~~~~~l~~~~~~~~~~~~i~~~~~~~~~l~~L~~-GrvDa~i~d~~~~~ 210 (302)
T PRK10797 159 -TS-----------------------G---TTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLES-GRAVAFMMDDALLA 210 (302)
T ss_pred -eC-----------------------C---CcHHHHHHHHhhhcCCceEEEEeCCHHHHHHHHHc-CCceEEEccHHHHH
Confidence 11 1 112222221111 1123467788999999999 99999999988776
Q ss_pred hhhhh--c-CCceeecceecCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 624 YEVEK--N-CDLMQVGGLLDSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 624 ~~~~~--~-~~~~~~~~~~~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
+.+.. . ..+.+++..+...+++++++| ++|++.+|.+|.++++ +|++.+|++||++.
T Consensus 211 ~~~~~~~~~~~l~i~~~~~~~~~~~~a~~k~~~~L~~~in~~L~~l~~--~G~l~~i~~kw~~~ 272 (302)
T PRK10797 211 GERAKAKKPDNWEIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQAQT--SGEAEKWFDKWFKN 272 (302)
T ss_pred HHHHcCCCCcceEECCccCCcCceeEEEeCCCHHHHHHHHHHHHHHHh--CchHHHHHHHHcCC
Confidence 65433 2 356667767777889999999 7899999999999999 99999999999984
No 86
>PRK11260 cystine transporter subunit; Provisional
Probab=99.84 E-value=4.4e-21 Score=199.99 Aligned_cols=228 Identities=19% Similarity=0.273 Sum_probs=177.8
Q ss_pred chhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCC
Q psy16206 396 DKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTG 474 (821)
Q Consensus 396 ~~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~ 474 (821)
+..++.+.++++|+|++.. ++|||.+.+++| ++ |+.+|+++.+++++|+++++++.
T Consensus 31 ~~~l~~i~~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~lg~~~e~~~~------------- 87 (266)
T PRK11260 31 EGLLNKVKERGTLLVGLEG--------TYPPFSFQGEDG--KLTGFEVEFAEALAKHLGVKASLKPT------------- 87 (266)
T ss_pred cccHHHhhcCCeEEEEeCC--------CcCCceEECCCC--CEEEehHHHHHHHHHHHCCeEEEEeC-------------
Confidence 3578888999999999987 799999876554 78 99999999999999999999864
Q ss_pred cchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHH
Q psy16206 475 KWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSL 554 (821)
Q Consensus 475 ~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~ 554 (821)
+|.+++.+|++|++|+++++++++++|.+.+.||.||+..+.++++++.+....+..+.++..... +..+.
T Consensus 88 ~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~dL~g~~Ig-------v~~G~-- 158 (266)
T PRK11260 88 KWDGMLASLDSKRIDVVINQVTISDERKKKYDFSTPYTVSGIQALVKKGNEGTIKTAADLKGKKVG-------VGLGT-- 158 (266)
T ss_pred CHHHHHHHHhcCCCCEEEeccccCHHHHhccccCCceeecceEEEEEcCCcCCCCCHHHcCCCEEE-------EecCC--
Confidence 599999999999999998778999999999999999999999999997654222222223322211 11111
Q ss_pred HHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCC-ce
Q psy16206 555 LLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCD-LM 633 (821)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~-~~ 633 (821)
.|...............+++..++++++.+ |++|+++.+...+.+++++.++ +.
T Consensus 159 ------------------------~~~~~l~~~~~~~~i~~~~~~~~~l~~L~~-GrvD~~i~d~~~~~~~~~~~~~~~~ 213 (266)
T PRK11260 159 ------------------------NYEQWLRQNVQGVDVRTYDDDPTKYQDLRV-GRIDAILVDRLAALDLVKKTNDTLA 213 (266)
T ss_pred ------------------------cHHHHHHHhCCCCceEecCCHHHHHHHHHc-CCCCEEEechHHHHHHHHhCCCcce
Confidence 111112111111223356778899999998 9999999999998888877654 45
Q ss_pred eecceecCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 634 QVGGLLDSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 634 ~~~~~~~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
.....+.+.++++++++ ++|++.+|++|.++++ +|.+++|++||+++
T Consensus 214 ~~~~~~~~~~~~~~v~~~~~~l~~~ln~~l~~~~~--~g~~~~i~~k~~~~ 262 (266)
T PRK11260 214 VAGEAFSRQESGVALRKGNPDLLKAVNQAIAEMQK--DGTLKALSEKWFGA 262 (266)
T ss_pred ecCCccccCceEEEEeCCCHHHHHHHHHHHHHHHh--CCcHHHHHHHhcCC
Confidence 55556677899999999 8899999999999999 99999999999875
No 87
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=99.83 E-value=2.5e-21 Score=217.33 Aligned_cols=272 Identities=19% Similarity=0.227 Sum_probs=201.8
Q ss_pred hhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCc
Q psy16206 397 KEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGK 475 (821)
Q Consensus 397 ~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~ 475 (821)
.+++.+.++++|+|++. .. |+.+.++++ .. ||++||++++++++|++++++.++ +
T Consensus 34 ~~l~~I~~~g~LrVg~~---------~~-P~~~~~~~~--~~~G~~~DLl~~ia~~LGv~~e~v~~~------------~ 89 (482)
T PRK10859 34 NQLEQIQERGELRVGTI---------NS-PLTYYIGND--GPTGFEYELAKRFADYLGVKLEIKVRD------------N 89 (482)
T ss_pred ccHHHHHhCCEEEEEEe---------cC-CCeeEecCC--CcccHHHHHHHHHHHHhCCcEEEEecC------------C
Confidence 57889999999999999 54 555543333 46 999999999999999999998654 7
Q ss_pred chHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHH
Q psy16206 476 WNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLL 555 (821)
Q Consensus 476 ~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~ 555 (821)
|++++.+|++|++|++++++++|++|++.++||.||+....+++++++.....++ +.++..+..+
T Consensus 90 ~~~ll~aL~~G~iDi~~~~lt~T~eR~~~~~FS~Py~~~~~~lv~r~~~~~i~~l-~dL~Gk~I~V-------------- 154 (482)
T PRK10859 90 ISQLFDALDKGKADLAAAGLTYTPERLKQFRFGPPYYSVSQQLVYRKGQPRPRSL-GDLKGGTLTV-------------- 154 (482)
T ss_pred HHHHHHHHhCCCCCEEeccCcCChhhhccCcccCCceeeeEEEEEeCCCCCCCCH-HHhCCCeEEE--------------
Confidence 9999999999999998888999999999999999999999999999875422222 2233222111
Q ss_pred HHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCc-----ccccCchhHHHHHHhccCceEEEecccchhhhhhhcC
Q psy16206 556 LFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPS-----VFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC 630 (821)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~ 630 (821)
. +. ..+.+..+.+....+. ....+.++++++|.+ |++|+++.|...+.......+
T Consensus 155 ---------------~-~g---S~~~~~L~~l~~~~p~i~~~~~~~~s~~e~l~aL~~-G~iDa~v~d~~~~~~~~~~~p 214 (482)
T PRK10859 155 ---------------A-AG---SSHVETLQELKKKYPELSWEESDDKDSEELLEQVAE-GKIDYTIADSVEISLNQRYHP 214 (482)
T ss_pred ---------------E-CC---CcHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHC-CCCCEEEECcHHHHHHHHhCC
Confidence 1 11 1122222222111111 234578999999999 999999999988876655566
Q ss_pred CceeecceecCCCcccccCC---chhhcccccceeEEEEeecCCccccccCCCCCcccee------------------cc
Q psy16206 631 DLMQVGGLLDSKGYGIAMPT---SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGELYGYS------------------VD 689 (821)
Q Consensus 631 ~~~~~~~~~~~~~~~~a~~k---~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~~g~~------------------~d 689 (821)
++.+......+.+++|+++| ++|++.+|++|.++++ +|.+.+|++||++....+. .+
T Consensus 215 ~l~v~~~l~~~~~~~~av~k~~~~~L~~~ln~~L~~i~~--~G~l~~L~~kyfg~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (482)
T PRK10859 215 ELAVAFDLTDEQPVAWALPPSGDDSLYAALLDFFNQIKE--DGTLARLEEKYFGHVDRFDYVDTRTFLRAIDNRLPKYQP 292 (482)
T ss_pred CceeeeecCCCceeEEEEeCCCCHHHHHHHHHHHHHhhc--CCHHHHHHHHHhhhhhhcchhhHHHHHHHHHHHhHHHHH
Confidence 77766555567789999998 6799999999999999 9999999999998643322 22
Q ss_pred hHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhh
Q psy16206 690 LIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE 731 (821)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 731 (821)
+++..++ ++.+.++.....++|.++|...++.|..|.||-
T Consensus 293 ~~~~~~~--~~d~~ll~a~~~~ES~~~~~a~s~~ga~Glmq~ 332 (482)
T PRK10859 293 LFEKYAG--ELDWRLLAAIAYQESHWNPQATSPTGVRGLMML 332 (482)
T ss_pred HHHHHhc--CCCHHHHHHHHHHhCCCCCCCCcCCCCEeccee
Confidence 2333344 666666666666788999988888888877763
No 88
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=99.83 E-value=1.3e-20 Score=194.31 Aligned_cols=218 Identities=22% Similarity=0.344 Sum_probs=168.1
Q ss_pred cCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHH
Q psy16206 404 ENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGE 482 (821)
Q Consensus 404 ~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 482 (821)
+.++|+|++.. ++|||.+.+ + +++ |+++|+++++++++|+++++++. +|.+++.+
T Consensus 23 ~~~~l~v~~~~--------~~~P~~~~~-~--g~~~G~~vdl~~~ia~~lg~~~~~~~~-------------~~~~~~~~ 78 (247)
T PRK09495 23 ADKKLVVATDT--------AFVPFEFKQ-G--DKYVGFDIDLWAAIAKELKLDYTLKPM-------------DFSGIIPA 78 (247)
T ss_pred cCCeEEEEeCC--------CCCCeeecC-C--CceEEEeHHHHHHHHHHhCCceEEEeC-------------CHHHHHHH
Confidence 35678888875 799999864 3 378 99999999999999999999854 59999999
Q ss_pred HHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhc
Q psy16206 483 LQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARI 562 (821)
Q Consensus 483 l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~ 562 (821)
|++|++|+++++++.|++|++.+.||.||+..+..+++++++....+ .+.++..+.. +..+.....++
T Consensus 79 l~~G~vDi~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~~~~~-~~dL~g~~I~-------v~~g~~~~~~l---- 146 (247)
T PRK09495 79 LQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNNDIKS-VKDLDGKVVA-------VKSGTGSVDYA---- 146 (247)
T ss_pred HhCCCcCEEEecCccCHHHHhhccccchheecceEEEEECCCCCCCC-hHHhCCCEEE-------EecCchHHHHH----
Confidence 99999999888899999999999999999999999999987542222 2233322211 11111111111
Q ss_pred CCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc--CCceeecceec
Q psy16206 563 SSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN--CDLMQVGGLLD 640 (821)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~--~~~~~~~~~~~ 640 (821)
...........+++..+++.++.+ |++|+++.+...+.+++++. ..+..++....
T Consensus 147 ----------------------~~~~~~~~i~~~~~~~~~~~~L~~-grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (247)
T PRK09495 147 ----------------------KANIKTKDLRQFPNIDNAYLELGT-GRADAVLHDTPNILYFIKTAGNGQFKAVGDSLE 203 (247)
T ss_pred ----------------------HhcCCCCceEEcCCHHHHHHHHHc-CceeEEEeChHHHHHHHHhCCCCceEEecCccc
Confidence 111111122346678889999998 99999999999998888764 35566666667
Q ss_pred CCCcccccCC-chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 641 SKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 641 ~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
..++++++++ .+|++.+|++|.++++ +|++.+|++||++.
T Consensus 204 ~~~~~~a~~~~~~l~~~~n~al~~~~~--~g~~~~i~~k~~~~ 244 (247)
T PRK09495 204 AQQYGIAFPKGSELREKVNGALKTLKE--NGTYAEIYKKWFGT 244 (247)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHHHHH--CCcHHHHHHHHcCC
Confidence 7789999999 8999999999999999 99999999999874
No 89
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=99.82 E-value=7.4e-21 Score=193.29 Aligned_cols=209 Identities=23% Similarity=0.287 Sum_probs=161.9
Q ss_pred cCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhh
Q psy16206 423 QGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSER 501 (821)
Q Consensus 423 ~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R 501 (821)
++|||.+.++++ ++ |+++|+++++++++|++++++.+ +|.+++.+|.+|++|+++++++.|++|
T Consensus 8 ~~~P~~~~~~~~--~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~~~~r 72 (225)
T PF00497_consen 8 DYPPFSYIDEDG--EPSGIDVDLLRAIAKRLGIKIEFVPM-------------PWSRLLEMLENGKADIIIGGLSITPER 72 (225)
T ss_dssp EBTTTBEEETTS--EEESHHHHHHHHHHHHHTCEEEEEEE-------------EGGGHHHHHHTTSSSEEESSEB-BHHH
T ss_pred CCCCeEEECCCC--CEEEEhHHHHHHHHhhcccccceeec-------------ccccccccccccccccccccccccccc
Confidence 899999987654 88 99999999999999999999975 599999999999999998889999999
Q ss_pred hcceeecccceeeceEEEEEcCCC-CCCCccc--ccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecCCChH
Q psy16206 502 RAAVDFTMPFMTLGISILYRKPAK-KQPDLFS--FLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVS 578 (821)
Q Consensus 502 ~~~~~fS~p~~~~~~~l~~~~~~~-~~~~~~~--~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (821)
.+.++||.||+....++++++.+. ....+.+ .+...+.. .. ...
T Consensus 73 ~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~-----------------------------~~----~g~ 119 (225)
T PF00497_consen 73 AKKFDFSDPYYSSPYVLVVRKGDAPPIKTIKSLDDLKGKRIG-----------------------------VV----RGS 119 (225)
T ss_dssp HTTEEEESESEEEEEEEEEETTSTCSTSSHSSGGGGTTSEEE-----------------------------EE----TTS
T ss_pred cccccccccccchhheeeeccccccccccccchhhhcCcccc-----------------------------cc----cch
Confidence 999999999999999999997532 1222221 22222111 11 111
Q ss_pred HHHHHHHh-hhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceee--cceecCCCcccccCC--chh
Q psy16206 579 LYQRMHSA-MESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQV--GGLLDSKGYGIAMPT--SKF 653 (821)
Q Consensus 579 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~k--~~l 653 (821)
.+.+.... .........+.+.+++++++.+ |++|+++.+...+.+++++....... .......++++++++ +.|
T Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-g~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 198 (225)
T PF00497_consen 120 SYADYLKQQYPSNINIVEVDSPEEALEALLS-GRIDAFIVDESTAEYLLKRHPLENIVVIPPPISPSPVYFAVRKKNPEL 198 (225)
T ss_dssp HHHHHHHHHTHHTSEEEEESSHHHHHHHHHT-TSSSEEEEEHHHHHHHHHHTTTCEEEEEEEEEEEEEEEEEEETTTHHH
T ss_pred hHHHHhhhhccchhhhcccccHHHHHHHHhc-CCeeeeeccchhhhhhhhhcccccccccccccccceeEEeecccccHH
Confidence 22222222 2212233467899999999999 99999999999999999987532222 455667788888887 999
Q ss_pred hcccccceeEEEEeecCCccccccCCCCC
Q psy16206 654 LAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 654 ~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
++.||++|.++++ +|++++|++||+|+
T Consensus 199 ~~~~n~~i~~l~~--~G~~~~i~~ky~g~ 225 (225)
T PF00497_consen 199 LEIFNKAIRELKQ--SGEIQKILKKYLGD 225 (225)
T ss_dssp HHHHHHHHHHHHH--TTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh--CcHHHHHHHHHcCC
Confidence 9999999999999 99999999999873
No 90
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=188.85 Aligned_cols=220 Identities=17% Similarity=0.255 Sum_probs=161.7
Q ss_pred ccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHH
Q psy16206 403 IENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIG 481 (821)
Q Consensus 403 ~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 481 (821)
...++|+|++.. ++|||.+.+++| ++ |+++|+++++++++|++++++.. +|++++.
T Consensus 23 ~~~~~l~v~~~~--------~~pPf~~~~~~g--~~~G~~vdl~~~ia~~lg~~~~~~~~-------------~~~~~~~ 79 (260)
T PRK15010 23 ALPETVRIGTDT--------TYAPFSSKDAKG--DFVGFDIDLGNEMCKRMQVKCTWVAS-------------DFDALIP 79 (260)
T ss_pred ccCCeEEEEecC--------CcCCceeECCCC--CEEeeeHHHHHHHHHHhCCceEEEeC-------------CHHHHHH
Confidence 344678888875 799999976654 88 99999999999999999999854 5999999
Q ss_pred HHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhh
Q psy16206 482 ELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLAR 561 (821)
Q Consensus 482 ~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~ 561 (821)
+++.|++|++++++.+|++|++.++||.||+..+.+++++++.....++ ..+...+.. +..+.
T Consensus 80 ~l~~g~~Di~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~-~dl~g~~Ig-------v~~gs--------- 142 (260)
T PRK15010 80 SLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTL-DSLKGKHVG-------VLQGS--------- 142 (260)
T ss_pred HHHCCCCCEEEecCcCCHHHHhhcccccceEeccEEEEEECCCCCCCCh-hHcCCCEEE-------EecCc---------
Confidence 9999999999888999999999999999999999999999886532222 222322211 11111
Q ss_pred cCCCcceeEeecCCChHHHHHHHHhhhc-cCCcccccCchhHHHHHHhccCceEEEecccchhh-hhhhc--CCceeecc
Q psy16206 562 ISSGSRLRYSAKNSNVSLYQRMHSAMES-SRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKN--CDLMQVGG 637 (821)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~-~~~~~--~~~~~~~~ 637 (821)
.+..+ ....+.. +...+.+.+.++++++|.. |++|+++.|...+.+ +.++. ..+...+.
T Consensus 143 --------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~-griDa~i~d~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T PRK15010 143 --------------TQEAY--ANETWRSKGVDVVAYANQDLVYSDLAA-GRLDAALQDEVAASEGFLKQPAGKDFAFAGP 205 (260)
T ss_pred --------------hHHHH--HHHhcccCCceEEecCCHHHHHHHHHc-CCccEEEeCcHHHHHHHHhCCCCCceEEecC
Confidence 11111 1111111 1122345677888999998 999999999988764 33332 23444433
Q ss_pred eecC-----CCcccccCC--chhhcccccceeEEEEeecCCccccccCCCC
Q psy16206 638 LLDS-----KGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETG 681 (821)
Q Consensus 638 ~~~~-----~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g 681 (821)
.... .++++++++ ++|++.+|++|.++++ +|.+.+|++||++
T Consensus 206 ~~~~~~~~~~~~~~a~~~~~~~L~~~ln~~l~~l~~--~G~~~~i~~ky~~ 254 (260)
T PRK15010 206 SVKDKKYFGDGTGVGLRKDDAELTAAFNKALGELRQ--DGTYDKMAKKYFD 254 (260)
T ss_pred ccccccccCCceEEEEeCCCHHHHHHHHHHHHHHHh--CCcHHHHHHHhcC
Confidence 2222 245689998 8899999999999999 9999999999986
No 91
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.80 E-value=8.5e-20 Score=230.60 Aligned_cols=225 Identities=9% Similarity=0.064 Sum_probs=169.1
Q ss_pred chhhhhhccCceEEEEeeccceeeeeecCCCcee-ecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCC
Q psy16206 396 DKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMM-KNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQT 473 (821)
Q Consensus 396 ~~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~-~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~ 473 (821)
......+.++++|+|++.. +++|+.+ .+++| ++ ||++||++.|++++|++++++.++
T Consensus 46 ~~e~~~l~~~~~l~vgv~~--------~~~p~~~~~~~~g--~~~G~~~D~l~~ia~~lG~~~e~v~~~----------- 104 (1197)
T PRK09959 46 NKELRWLASKKNLVIAVHK--------SQTATLLHTDSQQ--RVRGINADYLNLLKRALNIKLTLREYA----------- 104 (1197)
T ss_pred HHHHHHHhhCCeEEEEecC--------CCCCCceeecCCC--ccceecHHHHHHHHHhcCCceEEEeCC-----------
Confidence 3567778889999999986 7766655 45444 89 999999999999999999999765
Q ss_pred CcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHH
Q psy16206 474 GKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVS 553 (821)
Q Consensus 474 ~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~ 553 (821)
+|++++.+|++|++|++++.++.+++|.+.++||.||+....+++++++.. ..+ ...++..+..+ .
T Consensus 105 -~~~~~l~~l~~g~iDl~~~~~~~~~~r~~~~~fs~py~~~~~~~v~~~~~~-~~~-~~~l~~~~i~~-------~---- 170 (1197)
T PRK09959 105 -DHQKAMDALEEGEVDIVLSHLVASPPLNDDIAATKPLIITFPALVTTLHDS-MRP-LTSSKPVNIAR-------V---- 170 (1197)
T ss_pred -CHHHHHHHHHcCCCcEecCccccccccccchhcCCCccCCCceEEEeCCCC-CCC-cccccCeEEEE-------e----
Confidence 899999999999999988888999999999999999999999999998754 222 12222222111 0
Q ss_pred HHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc--CC
Q psy16206 554 LLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN--CD 631 (821)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~--~~ 631 (821)
++.... ..+.+.+. ....+.+++..+++++|.+ |++|+++.+..++.++++++ .+
T Consensus 171 -------------------~g~~~~--~~~~~~~p-~~~i~~~~s~~~al~av~~-G~~Da~i~~~~~~~~~i~~~~~~~ 227 (1197)
T PRK09959 171 -------------------ANYPPD--EVIHQSFP-KATIISFTNLYQALASVSA-GQNDYFIGSNIITSSMISRYFTHS 227 (1197)
T ss_pred -------------------CCCCCH--HHHHHhCC-CCEEEeCCCHHHHHHHHHc-CCCCEEEccHHHHHHHHhcccccc
Confidence 000111 11111121 1233578899999999999 99999999999999999874 24
Q ss_pred ceeecce-ecCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCC
Q psy16206 632 LMQVGGL-LDSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETG 681 (821)
Q Consensus 632 ~~~~~~~-~~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g 681 (821)
+...... ......+++++| +.|++.||++|.++.+ ++.. +|++||++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~L~~~lnkal~~i~~--~~~~-~i~~kW~~ 277 (1197)
T PRK09959 228 LNVVKYYNSPRQYNFFLTRKESVILNEVLNRFVDALTN--EVRY-EVSQNWLD 277 (1197)
T ss_pred eEEEeeccCCCCceeEEEcCCcHHHHHHHHHHHHhCCH--HHHH-HHHHhccC
Confidence 5554332 233456688888 7799999999999998 7777 89999983
No 92
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein. Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.
Probab=99.80 E-value=1.1e-19 Score=190.17 Aligned_cols=226 Identities=18% Similarity=0.201 Sum_probs=168.6
Q ss_pred chhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCe-EEEEEecCCcccccCCCC
Q psy16206 396 DKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFT-YKFVLERENTYGTLNPQT 473 (821)
Q Consensus 396 ~~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~-~~~~~~~~~~~g~~~~~~ 473 (821)
...++++..+++|+|++. ++|||.+.+++| ++ |+++|+++++++++|++ ++++..
T Consensus 23 ~~~~~~i~~~~~l~v~~~---------~~pP~~~~~~~g--~~~G~~~dl~~~i~~~lg~~~~~~~~~------------ 79 (275)
T TIGR02995 23 ANTLEELKEQGFARIAIA---------NEPPFTYVGADG--KVSGAAPDVARAIFKRLGIADVNASIT------------ 79 (275)
T ss_pred cchHHHHHhCCcEEEEcc---------CCCCceeECCCC--ceecchHHHHHHHHHHhCCCceeeccC------------
Confidence 356888999999999998 899999976654 88 99999999999999997 666643
Q ss_pred CcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccC-chhHHHHHHHHHHHH
Q psy16206 474 GKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPL-SFDVWVYMATAYLGV 552 (821)
Q Consensus 474 ~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~vw~~~~~~~~~~ 552 (821)
+|++++..+++|++|+++.++++|++|++.++||.||+....++++++++.......+.+..+ +..+ ++..+
T Consensus 80 -~w~~~~~~l~~G~~Di~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~i~~~~dl~~~~g~~I-----gv~~g- 152 (275)
T TIGR02995 80 -EYGALIPGLQAGRFDAIAAGLFIKPERCKQVAFTQPILCDAEALLVKKGNPKGLKSYKDIAKNPDAKI-----AAPGG- 152 (275)
T ss_pred -CHHHHHHHHHCCCcCEEeecccCCHHHHhccccccceeecceeEEEECCCCCCCCCHHHhccCCCceE-----EEeCC-
Confidence 699999999999999987889999999999999999999999999998764211112222211 1111 11111
Q ss_pred HHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhh-ccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcC-
Q psy16206 553 SLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAME-SSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC- 630 (821)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~- 630 (821)
..+.+..+... .....+.+++.++++++|.. |++|+++.+...+.+++++..
T Consensus 153 -------------------------~~~~~~l~~~~~~~~~i~~~~~~~~~i~~L~~-grvDa~i~d~~~~~~~~~~~~~ 206 (275)
T TIGR02995 153 -------------------------GTEEKLAREAGVKREQIIVVPDGQSGLKMVQD-GRADAYSLTVLTINDLASKAGD 206 (275)
T ss_pred -------------------------cHHHHHHHHcCCChhhEEEeCCHHHHHHHHHc-CCCCEEecChHHHHHHHHhCCC
Confidence 11222222211 11123467889999999999 999999999999999887642
Q ss_pred -Cceeecce-ecC--CCcccccCC--chhhcccccceeEEEEeecCCccccccCC
Q psy16206 631 -DLMQVGGL-LDS--KGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPE 679 (821)
Q Consensus 631 -~~~~~~~~-~~~--~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~ 679 (821)
++..+... ..+ ..+++++++ +.|++.+|++|.++++ +|++.+|++||
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~l~~~~~--sG~~~~i~~ky 259 (275)
T TIGR02995 207 PNVEVLAPFKDAPVRYYGGAAFRPEDKELRDAFNVELAKLKE--SGEFAKIIAPY 259 (275)
T ss_pred CCceeecCccCCccccceeEEECCCCHHHHHHHHHHHHHHHh--ChHHHHHHHHh
Confidence 44433221 111 223788887 8899999999999999 99999999999
No 93
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=99.79 E-value=2.5e-19 Score=185.43 Aligned_cols=223 Identities=20% Similarity=0.309 Sum_probs=169.1
Q ss_pred hhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCc
Q psy16206 397 KEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGK 475 (821)
Q Consensus 397 ~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~ 475 (821)
+......+ ++|+|++.. ++|||.+.+++| ++ |+++|+++.+++++|+++++++. +
T Consensus 16 ~~~~~~~~-~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~lg~~~~~~~~-------------~ 71 (250)
T TIGR01096 16 ATAAAAKE-GSVRIGTET--------GYPPFESKDANG--KLVGFDVDLAKALCKRMKAKCKFVEQ-------------N 71 (250)
T ss_pred hhHHHhhC-CeEEEEECC--------CCCCceEECCCC--CEEeehHHHHHHHHHHhCCeEEEEeC-------------C
Confidence 34455666 789999876 899999976654 88 99999999999999999999864 6
Q ss_pred chHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHH
Q psy16206 476 WNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLL 555 (821)
Q Consensus 476 ~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~ 555 (821)
|++++.++.+|++|+++++++.+++|.+.+.||.|++..+..++++++.... ...+.++..+.. +..+..
T Consensus 72 ~~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~-~~~~dl~g~~i~-------~~~g~~-- 141 (250)
T TIGR01096 72 FDGLIPSLKAKKVDAIMATMSITPKRQKQIDFSDPYYATGQGFVVKKGSDLA-KTLEDLDGKTVG-------VQSGTT-- 141 (250)
T ss_pred HHHHHHHHhCCCcCEEEecCccCHHHhhccccccchhcCCeEEEEECCCCcC-CChHHcCCCEEE-------EecCch--
Confidence 9999999999999999877889999999999999999999999999876422 222222222211 111111
Q ss_pred HHhhhhcCCCcceeEeecCCChHHHHHHHH-hhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcC---C
Q psy16206 556 LFFLARISSGSRLRYSAKNSNVSLYQRMHS-AMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC---D 631 (821)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~---~ 631 (821)
+..... .+........+.+.+++++++.+ |++|+++.+...+.+++++.. +
T Consensus 142 ------------------------~~~~l~~~~~~~~~~~~~~s~~~~~~~L~~-g~vD~~v~~~~~~~~~~~~~~~~~~ 196 (250)
T TIGR01096 142 ------------------------HEQYLKDYFKPGVDIVEYDSYDNANMDLKA-GRIDAVFTDASVLAEGFLKPPNGKD 196 (250)
T ss_pred ------------------------HHHHHHHhccCCcEEEEcCCHHHHHHHHHc-CCCCEEEeCHHHHHHHHHhCCCCCc
Confidence 111111 11111223456789999999998 999999999999998887653 3
Q ss_pred ceeecceecC-----CCcccccCC--chhhcccccceeEEEEeecCCccccccCCC
Q psy16206 632 LMQVGGLLDS-----KGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPET 680 (821)
Q Consensus 632 ~~~~~~~~~~-----~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~ 680 (821)
+..++..+.. ..+++++++ ++|+..||++|.++++ +|++.+|++||+
T Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ln~~l~~l~~--~g~~~~i~~kw~ 250 (250)
T TIGR01096 197 FKFVGPSVTDEKYFGDGYGIGLRKGDTELKAAFNKALAAIRA--DGTYQKISKKWF 250 (250)
T ss_pred eEEeccccccccccCCceEEEEeCCCHHHHHHHHHHHHHHHH--CCcHHHHHHhhC
Confidence 5555544332 247899998 7899999999999999 999999999995
No 94
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=99.79 E-value=3.2e-19 Score=184.35 Aligned_cols=225 Identities=15% Similarity=0.121 Sum_probs=163.7
Q ss_pred chhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHc-CC--eEEEEEecCCcccccCC
Q psy16206 396 DKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANEL-NF--TYKFVLERENTYGTLNP 471 (821)
Q Consensus 396 ~~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l-~~--~~~~~~~~~~~~g~~~~ 471 (821)
...++.++++++|+|++.. ++|||.+.++.+ +++ ||++|+++++++++ |. +++++.+
T Consensus 28 ~~~l~~i~~~g~l~vg~~~--------~~pP~~~~~~~~-g~~~G~~vdl~~~ia~~llg~~~~~~~~~~---------- 88 (259)
T PRK11917 28 EGKLESIKSKGQLIVGVKN--------DVPHYALLDQAT-GEIKGFEIDVAKLLAKSILGDDKKIKLVAV---------- 88 (259)
T ss_pred cchHHHHHhCCEEEEEECC--------CCCCceeeeCCC-CceeEeeHHHHHHHHHHhcCCCccEEEEEc----------
Confidence 3678999999999999997 899999965322 488 99999999999995 75 4555544
Q ss_pred CCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHH
Q psy16206 472 QTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLG 551 (821)
Q Consensus 472 ~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~ 551 (821)
+|.....+|.+|++|++++++++|++|++.++||.||+.++.++++++++. ..+ .+.++..+..
T Consensus 89 ---~~~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~lvv~~~~~-~~s-~~dL~g~~V~----------- 152 (259)
T PRK11917 89 ---NAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKN-YKS-LADMKGANIG----------- 152 (259)
T ss_pred ---ChhhHHHHHHCCCccEEEecccCChhhhheeeeccCceeeceEEEEECCCC-CCC-HHHhCCCeEE-----------
Confidence 467778999999999999999999999999999999999999999998764 222 2223322211
Q ss_pred HHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCC
Q psy16206 552 VSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCD 631 (821)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~ 631 (821)
............+..+..........+++..++++++.. |++|+++.+..++..+..+ +
T Consensus 153 ------------------v~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-GrvDa~~~d~~~~~~~~~~--~ 211 (259)
T PRK11917 153 ------------------VAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDA-KRVDAFSVDKSILLGYVDD--K 211 (259)
T ss_pred ------------------EecCCcHHHHHHHhhHhcCCceeEEecCCHHHHHHHHHc-CCCcEEEecHHHHHHhhhc--C
Confidence 111111111111111111100112356688899999998 9999999998877665543 2
Q ss_pred ceeecceecCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCC
Q psy16206 632 LMQVGGLLDSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPET 680 (821)
Q Consensus 632 ~~~~~~~~~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~ 680 (821)
...+...+...+++++++| ++|.+.+|++|.+++. ++.+|++||.
T Consensus 212 ~~~~~~~~~~~~~~~a~~k~~~~l~~~ln~~l~~~~~----~~~~i~~kw~ 258 (259)
T PRK11917 212 SEILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKN----EIDALAKKWG 258 (259)
T ss_pred CeecCCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHH----HHHHHHHHhC
Confidence 3455666778889999999 7899999999988733 6888888883
No 95
>PRK15007 putative ABC transporter arginine-biding protein; Provisional
Probab=99.79 E-value=2.2e-19 Score=184.89 Aligned_cols=215 Identities=19% Similarity=0.245 Sum_probs=160.5
Q ss_pred CceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHH
Q psy16206 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGEL 483 (821)
Q Consensus 405 ~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 483 (821)
.++|+|++.. ++|||.+.+++| ++ |+++|+++++++++|++++++.. +|++++.++
T Consensus 20 ~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~lg~~~~~~~~-------------~~~~~~~~l 76 (243)
T PRK15007 20 AETIRFATEA--------SYPPFESIDANN--QIVGFDVDLAQALCKEIDATCTFSNQ-------------AFDSLIPSL 76 (243)
T ss_pred CCcEEEEeCC--------CCCCceeeCCCC--CEEeeeHHHHHHHHHHhCCcEEEEeC-------------CHHHHhHHH
Confidence 4577888765 799999976554 88 99999999999999999999854 699999999
Q ss_pred HcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcC
Q psy16206 484 QEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARIS 563 (821)
Q Consensus 484 ~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~ 563 (821)
++|++|+++++++.+++|++.+.||.||+..+.+++.++.. ..+ ...++..+.. +..+..
T Consensus 77 ~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~v~~~~~--~~~-~~dL~g~~Ig-------v~~g~~---------- 136 (243)
T PRK15007 77 KFRRVEAVMAGMDITPEREKQVLFTTPYYDNSALFVGQQGK--YTS-VDQLKGKKVG-------VQNGTT---------- 136 (243)
T ss_pred hCCCcCEEEEcCccCHHHhcccceecCccccceEEEEeCCC--CCC-HHHhCCCeEE-------EecCcH----------
Confidence 99999998878899999999999999999998888777552 222 2223332211 111111
Q ss_pred CCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeeccee----
Q psy16206 564 SGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGGLL---- 639 (821)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~~~---- 639 (821)
+...............+.+..+++.+|.+ |++|+++.+..++.+++++.+.+..+....
T Consensus 137 ----------------~~~~l~~~~~~~~~~~~~~~~~~~~~L~~-grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (243)
T PRK15007 137 ----------------HQKFIMDKHPEITTVPYDSYQNAKLDLQN-GRIDAVFGDTAVVTEWLKDNPKLAAVGDKVTDKD 199 (243)
T ss_pred ----------------HHHHHHHhCCCCeEEEcCCHHHHHHHHHc-CCCCEEEeCHHHHHHHHhcCCCceeecCcccccc
Confidence 11111111111122345678888988888 999999999999888887766555544322
Q ss_pred -cCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCC
Q psy16206 640 -DSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETG 681 (821)
Q Consensus 640 -~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g 681 (821)
...++++++++ ++|++.+|++|.++++ +|.+++|++||+.
T Consensus 200 ~~~~~~~~~~~~~~~~l~~~ln~~l~~l~~--~g~~~~i~~~w~~ 242 (243)
T PRK15007 200 YFGTGLGIAVRQGNTELQQKLNTALEKVKK--DGTYETIYNKWFQ 242 (243)
T ss_pred cCCcceEEEEeCCCHHHHHHHHHHHHHHHh--CCcHHHHHHHhcC
Confidence 23457899988 8999999999999999 9999999999974
No 96
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional
Probab=99.78 E-value=4e-19 Score=184.51 Aligned_cols=220 Identities=17% Similarity=0.233 Sum_probs=161.5
Q ss_pred ccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHH
Q psy16206 403 IENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIG 481 (821)
Q Consensus 403 ~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 481 (821)
...++|+|++.. ++|||.+.+++| ++ |+++|+++++++++|.+++++.. +|++++.
T Consensus 23 a~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~vdi~~~ia~~lg~~i~~~~~-------------pw~~~~~ 79 (259)
T PRK15437 23 AIPQNIRIGTDP--------TYAPFESKNSQG--ELVGFDIDLAKELCKRINTQCTFVEN-------------PLDALIP 79 (259)
T ss_pred ccCCeEEEEeCC--------CCCCcceeCCCC--CEEeeeHHHHHHHHHHcCCceEEEeC-------------CHHHHHH
Confidence 345778888874 699999976655 88 99999999999999999999865 5999999
Q ss_pred HHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhh
Q psy16206 482 ELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLAR 561 (821)
Q Consensus 482 ~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~ 561 (821)
++++|++|+++++++.|++|++.+.||.||+..+.+++++++.+...++ +.+++.+..+ ..+
T Consensus 80 ~l~~g~~D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~-~dl~g~~Igv-------~~g---------- 141 (259)
T PRK15437 80 SLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTV-ESLKGKRVGV-------LQG---------- 141 (259)
T ss_pred HHHCCCCCEEEecCCCCHHHhhhccccchhhcCceEEEEECCCCCCCCh-HHhCCCEEEE-------ecC----------
Confidence 9999999999888999999999999999999999999999976533232 2334333221 111
Q ss_pred cCCCcceeEeecCCChHHHHHHHHhh-h-ccCCcccccCchhHHHHHHhccCceEEEecccchhh-hhhhc--CCceeec
Q psy16206 562 ISSGSRLRYSAKNSNVSLYQRMHSAM-E-SSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKN--CDLMQVG 636 (821)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~-~~~~~--~~~~~~~ 636 (821)
. .+....+.. . .....+.+.+.++++++|.. |++|+++.+...+.+ +.++. ..+....
T Consensus 142 -------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~-grvD~~v~~~~~~~~~~~~~~~~~~~~~~~ 204 (259)
T PRK15437 142 -------------T---TQETFGNEHWAPKGIEIVSYQGQDNIYSDLTA-GRIDAAFQDEVAASEGFLKQPVGKDYKFGG 204 (259)
T ss_pred -------------c---HHHHHHHhhccccCceEEecCCHHHHHHHHHc-CCccEEEechHHHHHHHHhCCCCCceEEec
Confidence 1 111111111 1 11122456677899999998 999999999988754 23332 2333322
Q ss_pred ceec-----CCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 637 GLLD-----SKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 637 ~~~~-----~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
..+. ..++++++++ ++|++.+|++|.++++ +|.+.+|++||++.
T Consensus 205 ~~i~~~~~~~~~~~ia~~~~~~~l~~~~n~~l~~~~~--~G~~~~i~~k~~~~ 255 (259)
T PRK15437 205 PSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRA--DGTYEKLAKKYFDF 255 (259)
T ss_pred CccccccccCcceEEEEeCCCHHHHHHHHHHHHHHHH--CCcHHHHHHHhcCC
Confidence 2222 2345688887 8899999999999999 99999999999874
No 97
>TIGR02285 conserved hypothetical protein. Members of this family are found in several Proteobacteria, including Pseudomonas putida KT2440, Bdellovibrio bacteriovorus HD100 (three members), Aeromonas hydrophila, and Chromobacterium violaceum ATCC 12472. The function is unknown.
Probab=99.71 E-value=1.5e-17 Score=173.61 Aligned_cols=221 Identities=16% Similarity=0.116 Sum_probs=155.5
Q ss_pred CceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHH
Q psy16206 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGE 482 (821)
Q Consensus 405 ~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 482 (821)
.++|++++. +||||.+.+.+ +.. |+..++++++++++ +++++++.. +|++++.+
T Consensus 17 ~~~l~~~~~---------~~pPf~~~~~~--~~~~G~~~~i~~~i~~~~~~~~~~~~~~-------------pw~r~l~~ 72 (268)
T TIGR02285 17 KEAITWIVN---------DFPPFFIFSGP--SKGRGVFDVILQEIRRALPQYEHRFVRV-------------SFARSLKE 72 (268)
T ss_pred cceeEEEec---------ccCCeeEeCCC--CCCCChHHHHHHHHHHHcCCCceeEEEC-------------CHHHHHHH
Confidence 468999988 89999997544 377 99999999999998 899999865 59999999
Q ss_pred HHcCCcceEEeccccchhhhcceeeccccee-eceEEEEEcCCCCC-CC-------cccc--cccCchhHHHHHHHHHHH
Q psy16206 483 LQEQRADLAICDLTITSERRAAVDFTMPFMT-LGISILYRKPAKKQ-PD-------LFSF--LEPLSFDVWVYMATAYLG 551 (821)
Q Consensus 483 l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~-~~~~l~~~~~~~~~-~~-------~~~~--l~~~~~~vw~~~~~~~~~ 551 (821)
+ +|+.|+++.++++|++|++.++||.||+. ...++++++++... .+ +.++ +...+
T Consensus 73 l-~~~~d~~~~~~~~t~eR~~~~~Fs~P~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~l~g~~------------- 138 (268)
T TIGR02285 73 L-QGKGGVCTVNLLRTPEREKFLIFSDPTLRALPVGLVLRKELTAGVRDEQDGDVDLKKLLASKKKR------------- 138 (268)
T ss_pred H-hcCCCeEEeeccCCcchhhceeecCCccccCCceEEEccchhhhccccCCCCccHHHHhcCCCeE-------------
Confidence 9 78787777789999999999999999875 57888888764311 11 1001 01111
Q ss_pred HHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhcc--CCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc
Q psy16206 552 VSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESS--RPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN 629 (821)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~ 629 (821)
++...............+..... .......+.++++++|.. |++|+++.+..++.+++++.
T Consensus 139 ----------------vgv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-GrvD~~v~d~~~~~~~~~~~ 201 (268)
T TIGR02285 139 ----------------LGVIASRSYGQQIDDILSDSGYQHNTRIIGNAAMGNLFKMLEK-GRVNYTLAYPPEKTYYEELN 201 (268)
T ss_pred ----------------EEEecceeccHHHHHHHHhCCcccceeeeccchHHHHHHHHHc-CCccEEEeCcHHHHHHHHhc
Confidence 11111111111112222211110 111234566778999998 99999999999999988753
Q ss_pred C----Cceeeccee--cCCCcccccCC----chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 630 C----DLMQVGGLL--DSKGYGIAMPT----SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 630 ~----~~~~~~~~~--~~~~~~~a~~k----~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
. .+...+... ...+++++++| .+|++.||++|.+|++ +|++++|++||++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~l~~~in~~L~~l~~--dG~~~~i~~k~~~~ 262 (268)
T TIGR02285 202 NGALPPLKFLPVAGMPAHISVWVACPKTEWGRKVIADIDQALSELNV--DPKYYKYFDRWLSP 262 (268)
T ss_pred cCCcCCeeEeecCCCccceEEEEEeCCCHHHHHHHHHHHHHHHHHhh--CHHHHHHHHHhCCH
Confidence 1 344433221 22357899999 4699999999999999 99999999999973
No 98
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.68 E-value=7.9e-17 Score=203.71 Aligned_cols=223 Identities=13% Similarity=0.111 Sum_probs=169.9
Q ss_pred hhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCc
Q psy16206 397 KEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGK 475 (821)
Q Consensus 397 ~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~ 475 (821)
.....+.++++|+|++.+ ++|||.|.+++| ++ ||++|+++.|++++|++++++..+ +
T Consensus 293 ~E~~wl~~~~~l~v~~~~--------~~pP~~~~d~~g--~~~G~~~Dll~~i~~~~g~~~~~v~~~------------~ 350 (1197)
T PRK09959 293 HEKQWIKQHPDLKVLENP--------YSPPYSMTDENG--SVRGVMGDILNIITLQTGLNFSPITVS------------H 350 (1197)
T ss_pred HHHHHHHHCCceEEEcCC--------CCCCeeEECCCC--cEeeehHHHHHHHHHHHCCeEEEEecC------------C
Confidence 445567788999999998 899999987665 89 999999999999999999998754 6
Q ss_pred chHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHH
Q psy16206 476 WNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLL 555 (821)
Q Consensus 476 ~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~ 555 (821)
|..+..+|++|++|++ .+++.|++|.+.++||.||+..+.+++++++.... ....+. ..|
T Consensus 351 ~~~~~~~l~~g~~D~i-~~~~~t~~r~~~~~fs~py~~~~~~~v~~~~~~~~---~~~~~g--~~v-------------- 410 (1197)
T PRK09959 351 NIHAGTQLNPGGWDII-PGAIYSEDRENNVLFAEAFITTPYVFVMQKAPDSE---QTLKKG--MKV-------------- 410 (1197)
T ss_pred HHHHHHHHHCCCceEe-ecccCCccccccceeccccccCCEEEEEecCCCCc---cccccC--CEE--------------
Confidence 8889999999999997 45778999999999999999999999998764311 111111 111
Q ss_pred HHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc--CCce
Q psy16206 556 LFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN--CDLM 633 (821)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~--~~~~ 633 (821)
+.... ..+.+...........+.+++..+++.+|.+ |++||++.+...+.|++++. ..+.
T Consensus 411 -------------av~~g----~~~~~~~~~~~p~~~~~~~~~~~~~l~av~~-G~~Da~i~~~~~~~~~~~~~~~~~l~ 472 (1197)
T PRK09959 411 -------------AIPYY----YELHSQLKEMYPEVEWIKVDNASAAFHKVKE-GELDALVATQLNSRYMIDHYYPNELY 472 (1197)
T ss_pred -------------EEeCC----cchHHHHHHHCCCcEEEEcCCHHHHHHHHHc-CCCCEEehhhHHHHHHHHhcccccce
Confidence 11000 0111111111112233578899999999999 99999999999999999874 2332
Q ss_pred -eecceecCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 634 -QVGGLLDSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 634 -~~~~~~~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
.........+++|+++| ++|++.+|++|.+++. + ++.+|++||++.
T Consensus 473 ~~~~~~~~~~~~~~av~k~~~~L~~~lnk~l~~i~~--~-~~~~i~~kW~~~ 521 (1197)
T PRK09959 473 HFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPP--S-EVLRLTEKWIKM 521 (1197)
T ss_pred eeecCCCCchheEEeeCCCCHHHHHHHHHHHHhCCH--H-HHHHHHhhcccC
Confidence 22333455788999999 8899999999999999 6 899999999873
No 99
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ. This predicted periplasmic protein, called MoxJ or MxaJ, is required for methanol oxidation in Methylobacterium extorquens. Two differing lines of evidence suggest two different roles. Forming one view, homology suggests it is the substrate-binding protein of an ABC transporter associated with methanol oxidation. The gene, furthermore, is found regular in genomes with, and only two or three genes away from, a corresponding permease and ATP-binding cassette gene pair. The other view is that this protein is an accessory factor or additional subunit of methanol dehydrogenase itself. Mutational studies show a dependence on this protein for expression of the PQQ-dependent, two-subunit methanol dehydrogenase (MxaF and MxaI) in Methylobacterium extorquens, as if it is a chaperone for enzyme assembly or a third subunit. A homologous N-terminal sequence was found in Paracoccus denitrificans as a 32Kd third subunit. This protein may, in
Probab=99.64 E-value=2.9e-16 Score=161.27 Aligned_cols=218 Identities=16% Similarity=0.125 Sum_probs=137.0
Q ss_pred eeeee--cCCCceeecCCCCCceeeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHH---HHHHcCCcceEE
Q psy16206 418 LRVLF--QGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLI---GELQEQRADLAI 492 (821)
Q Consensus 418 lrVgv--~~~P~~~~~~~~~~~~G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~l~~g~~Di~~ 492 (821)
||||+ ++|||.+.+. . ||++||+++||+++|++++++.. +|++++ ..|.+|++|+++
T Consensus 2 l~vg~~~~~pPf~~~~~-~----Gfdvdl~~~ia~~lg~~~~~~~~-------------~~~~~~~~~~~L~~g~~Dii~ 63 (246)
T TIGR03870 2 LRVCAATKEAPYSTKDG-S----GFENKIAAALAAAMGRKVVFVWL-------------AKPAIYLVRDGLDKKLCDVVL 63 (246)
T ss_pred eEEEeCCCCCCCccCCC-C----cchHHHHHHHHHHhCCCeEEEEe-------------ccchhhHHHHHHhcCCccEEE
Confidence 44444 8999999642 3 99999999999999999999965 588766 699999999997
Q ss_pred eccccchhhhcceeecccceeeceEEEEEcCCCC-CCCccc-ccccC-chhHHHHHHHHHHHHHHHHHhhhhcCCCccee
Q psy16206 493 CDLTITSERRAAVDFTMPFMTLGISILYRKPAKK-QPDLFS-FLEPL-SFDVWVYMATAYLGVSLLLFFLARISSGSRLR 569 (821)
Q Consensus 493 ~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~-~~~~~~-~l~~~-~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (821)
+++++++| +.||.||+.++.++++++++.. ..++.. .++.. + +++..++....++.+. ..+
T Consensus 64 -~~~~t~~r---~~fS~PY~~~~~~~v~~k~~~~~~~~~~d~~L~g~~~-------vgv~~gs~~~~~l~~~-~~~---- 127 (246)
T TIGR03870 64 -GLDTGDPR---VLTTKPYYRSSYVFLTRKDRNLDIKSWNDPRLKKVSK-------IGVIFGSPAETMLKQI-GRY---- 127 (246)
T ss_pred -eCCCChHH---HhcccCcEEeeeEEEEeCCCCCCCCCccchhhccCce-------EEEecCChHHHHHHhc-Ccc----
Confidence 58888877 6899999999999999987642 222111 13322 2 1222222222222110 000
Q ss_pred EeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc-CCcee--eccee-------
Q psy16206 570 YSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN-CDLMQ--VGGLL------- 639 (821)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~-~~~~~--~~~~~------- 639 (821)
.....|.................+..+++++|.. |++|+++.+...+.++++++ ..+.+ +....
T Consensus 128 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~-GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (246)
T TIGR03870 128 -----EDNFAYLYSLVNFKSPRNQYTQIDPRKLVSEVAT-GKADLAVAFAPEVARYVKASPEPLRMTVIPDDATRSDGAK 201 (246)
T ss_pred -----ccccccccccccccCcccccccCCHHHHHHHHHc-CCCCEEEeeHHhHHHHHHhCCCCceEEeccccccccCCCC
Confidence 0000000000000000000001135788999998 99999999887777777653 33432 22211
Q ss_pred cCC--CcccccCC--chhhcccccceeEEEEeecCCccccccCC
Q psy16206 640 DSK--GYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPE 679 (821)
Q Consensus 640 ~~~--~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~ 679 (821)
.+. +++++++| ++|++.||++|.+++. ++++|..+|
T Consensus 202 ~~~~~~~~iav~k~~~~L~~~in~aL~~l~~----~~~~i~~~y 241 (246)
T TIGR03870 202 IPMQYDQSMGVRKDDTALLAEIDAALAKAKP----RIDAILKEE 241 (246)
T ss_pred cceeeEEEEEEccCCHHHHHHHHHHHHHhHH----HHHHHHHHc
Confidence 111 35899999 7899999999999885 677777777
No 100
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=99.58 E-value=4.2e-15 Score=149.42 Aligned_cols=210 Identities=26% Similarity=0.364 Sum_probs=158.5
Q ss_pred eeeee--cCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEec
Q psy16206 418 LRVLF--QGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICD 494 (821)
Q Consensus 418 lrVgv--~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~ 494 (821)
||||+ .+|||.+.++++ ++ |+.+|+++.+++++|++++++.. .|.+++.+|.+|++|+++..
T Consensus 1 l~i~~~~~~~p~~~~~~~g--~~~G~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~ 65 (218)
T cd00134 1 LTVGTAGTYPPFSFRDANG--ELTGFDVDLAKAIAKELGVKVKFVEV-------------DWDGLITALKSGKVDLIAAG 65 (218)
T ss_pred CEEecCCCCCCeeEECCCC--CEEeeeHHHHHHHHHHhCCeEEEEeC-------------CHHHHHHHHhcCCcCEEeec
Confidence 45666 899999987655 88 99999999999999999999865 48999999999999999877
Q ss_pred cccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecC
Q psy16206 495 LTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKN 574 (821)
Q Consensus 495 ~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (821)
...+++|.+.+.|+.|+.....+++++++++. .+ .+.++..+..+. .+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~dl~g~~i~~~-------~~~---------------------- 114 (218)
T cd00134 66 MTITPERAKQVDFSDPYYKSGQVILVKKGSPI-KS-VKDLKGKKVAVQ-------KGS---------------------- 114 (218)
T ss_pred CcCCHHHHhhccCcccceeccEEEEEECCCCC-CC-hHHhCCCEEEEE-------cCc----------------------
Confidence 77889999999999999999999999988663 22 223333322210 110
Q ss_pred CChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc-CCceeecce--ecCCCcccccCC-
Q psy16206 575 SNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN-CDLMQVGGL--LDSKGYGIAMPT- 650 (821)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~a~~k- 650 (821)
.+...............+.+.++++.++.. |++|+++.+.....+..++. +++..+... ..+..++++.++
T Consensus 115 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 189 (218)
T cd00134 115 ----TAEKYLKKALPEAKVVSYDDNAEALAALEN-GRADAVIVDEIALAALLKKHPPELKIVGPSIDLEPLGFGVAVGKD 189 (218)
T ss_pred ----hHHHHHHHhCCcccEEEeCCHHHHHHHHHc-CCccEEEeccHHHHHHHHhcCCCcEEeccccCCCccceEEEEcCC
Confidence 111111111112233467788899999998 99999999999998887765 667666654 233445555555
Q ss_pred -chhhcccccceeEEEEeecCCccccccCCC
Q psy16206 651 -SKFLAKFSFGFAKLRVLFQGEPYMMKNPET 680 (821)
Q Consensus 651 -~~l~~~in~al~~l~~~~~g~~~~i~~k~~ 680 (821)
+++.+.++++|.++++ +|++++|.+||+
T Consensus 190 ~~~l~~~~~~~l~~~~~--~g~~~~i~~~~~ 218 (218)
T cd00134 190 NKELLDAVNKALKELRA--DGELKKISKKWF 218 (218)
T ss_pred CHHHHHHHHHHHHHHHh--CccHHHHHHhhC
Confidence 5899999999999999 999999999985
No 101
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=2.5e-15 Score=150.54 Aligned_cols=279 Identities=17% Similarity=0.150 Sum_probs=203.3
Q ss_pred hhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCceeeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcc
Q psy16206 397 KEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKW 476 (821)
Q Consensus 397 ~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~ 476 (821)
.++..|.++|.|+|+|. ..|.++....+ +..|+++++++.+|++||+++++.+.+ +-
T Consensus 14 ~~l~~Iq~rGvLrV~ti----------nsp~sy~~~~~-~p~G~eYelak~Fa~yLgV~Lki~~~~------------n~ 70 (473)
T COG4623 14 NDLAAIQARGVLRVSTI----------NSPLSYFEDKG-GPTGLEYELAKAFADYLGVKLKIIPAD------------NI 70 (473)
T ss_pred chHHHHHhcCeEEEEee----------cCccceeccCC-CccchhHHHHHHHHHHhCCeEEEEecC------------CH
Confidence 67999999999999999 35566633333 133999999999999999999999865 57
Q ss_pred hHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHH
Q psy16206 477 NGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLL 556 (821)
Q Consensus 477 ~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~ 556 (821)
++++.+|.+|++|++++++.+.++|.+.+...+.|+.....+++|++.....++.. +..-+..+ ..++..... ..
T Consensus 71 dqLf~aL~ng~~DL~Aagl~~~~~~l~~~~~gP~y~svs~qlVyRkG~~Rp~~l~~-L~g~~i~v---~~gs~~~~~-l~ 145 (473)
T COG4623 71 DQLFDALDNGNADLAAAGLLYNSERLKNFQPGPTYYSVSQQLVYRKGQYRPRSLGQ-LKGRQITV---AKGSAHVED-LK 145 (473)
T ss_pred HHHHHHHhCCCcceecccccCChhHhcccCCCCceecccHHHHhhcCCCCCCCHHH-ccCceeec---cCCcHHHHH-HH
Confidence 89999999999999999999999999999888889999999999999775443322 22211111 000000000 00
Q ss_pred HhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeec
Q psy16206 557 FFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG 636 (821)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~ 636 (821)
-+.+ ..|.++.-... .-.+.++.+.+|.. |++|.++.|+..+....+-++++.+..
T Consensus 146 ~lk~-----------------~kyP~l~~k~d------~~~~~~dLle~v~~-Gkldytiads~~is~~q~i~P~laVaf 201 (473)
T COG4623 146 LLKE-----------------TKYPELIWKVD------DKLGVEDLLEMVAE-GKLDYTIADSVEISLFQRVHPELAVAF 201 (473)
T ss_pred HHHH-----------------hhcchhhhhhc------ccccHHHHHHHHhc-CCcceeeeccHHHHHHHHhCccceeee
Confidence 0000 00111000000 12256889999998 999999999999998888899999999
Q ss_pred ceecCCCcccccCC---chhhcccccceeEEEEeecCCccccccCCCCCcccee------------------cchHHHHH
Q psy16206 637 GLLDSKGYGIAMPT---SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGELYGYS------------------VDLIKMIA 695 (821)
Q Consensus 637 ~~~~~~~~~~a~~k---~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~~g~~------------------~d~~~~~~ 695 (821)
+.-...++.|.+|. +.|...++.++.++++ +|.++.+.+||+|+..-|. .-+++..+
T Consensus 202 d~tde~~v~Wy~~~~dd~tL~a~ll~F~~~~~e--~g~larleeky~gH~~~fdYvdtr~f~~A~~~~Lp~~~pLfekya 279 (473)
T COG4623 202 DLTDEQPVAWYLPRDDDSTLSAALLDFLNEAKE--DGLLARLEEKYLGHGDDFDYVDTRTFLRAIDNRLPQLRPLFEKYA 279 (473)
T ss_pred ecccccCceeeccCCchHHHHHHHHHHHHHhhc--chHHHHHHHHHhccccccchhhhHHHHHHHHhhhhhhhHHHHHhh
Confidence 88888999999999 7899999999999999 9999999999998643221 11222233
Q ss_pred hhcCceEEEEEccCCcccccCCCCCcchhhHHHHhh
Q psy16206 696 NELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE 731 (821)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 731 (821)
.++. |..+.+..++.++.+|+..+-.|+-|.|+-
T Consensus 280 ~e~d--WrlLAAiaYQESHwnP~AtsptGvrGlMmL 313 (473)
T COG4623 280 GELD--WRLLAAIAYQESHWNPQATSPTGVRGLMML 313 (473)
T ss_pred cccc--HHHHHHHHHHHhccCCCCCCCccchhhhhh
Confidence 3333 445556666778899988888898888863
No 102
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]
Probab=99.57 E-value=5.4e-15 Score=155.32 Aligned_cols=225 Identities=24% Similarity=0.271 Sum_probs=164.7
Q ss_pred hccCceEEEEeeccceeeeeecC-CCceeecCCCCCce-eeHHHHHHHHHHHcCCe--EEEEEecCCcccccCCCCCcch
Q psy16206 402 KIENRTLTVTSKTFAKLRVLFQG-EPYMMKNPETGELY-GYSVDLIKMIANELNFT--YKFVLERENTYGTLNPQTGKWN 477 (821)
Q Consensus 402 ~~~~~~l~v~~~~g~~lrVgv~~-~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~--~~~~~~~~~~~g~~~~~~~~~~ 477 (821)
+...+.++|++.. .+ +||.+.+... +++ ||++|+++.+++.++.. .+++. ..|+
T Consensus 30 ~~~~~~~~v~~~~--------~~~~p~~~~~~~~-~~~~G~dvdl~~~ia~~l~~~~~~~~~~-------------~~~~ 87 (275)
T COG0834 30 IKARGKLRVGTEA--------TYAPPFEFLDAKG-GKLVGFDVDLAKAIAKRLGGDKKVEFVP-------------VAWD 87 (275)
T ss_pred hhhcCeEEEEecC--------CCCCCcccccCCC-CeEEeeeHHHHHHHHHHhCCcceeEEec-------------cchh
Confidence 3356778888874 44 5999977652 378 99999999999999886 56653 3799
Q ss_pred HHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHH
Q psy16206 478 GLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLF 557 (821)
Q Consensus 478 ~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~ 557 (821)
+++..|..|++|++++.+++|++|.+.++||.||+..+..+++++++.........+......+ ..++.
T Consensus 88 ~~~~~l~~g~~D~~~~~~~~t~er~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~DL~gk~v~v-------~~gt~---- 156 (275)
T COG0834 88 GLIPALKAGKVDIIIAGMTITPERKKKVDFSDPYYYSGQVLLVKKDSDIGIKSLEDLKGKKVGV-------QLGTT---- 156 (275)
T ss_pred hhhHHHhcCCcCEEEeccccCHHHhccccccccccccCeEEEEECCCCcCcCCHHHhCCCEEEE-------EcCcc----
Confidence 9999999999999999999999999999999999999999999988763222233334322222 11111
Q ss_pred hhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhh--hhhcCCceee
Q psy16206 558 FLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYE--VEKNCDLMQV 635 (821)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~--~~~~~~~~~~ 635 (821)
..+.............+.+++..+++.++.. |++|+++.|...+.++ .....+....
T Consensus 157 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-Gr~Da~~~d~~~~~~~~~~~~~~~~~~~ 215 (275)
T COG0834 157 --------------------DEAEEKAKKPGPNAKIVAYDSNAEALLALKN-GRADAVVSDSAVLAGLKLLKKNPGLYVL 215 (275)
T ss_pred --------------------hhHHHHHhhccCCceEEeeCCHHHHHHHHHc-CCccEEEcchHhhhhhhhhhcCCCCcee
Confidence 1111111111122233467778889999998 9999999999999995 3333333332
Q ss_pred c-ceecC-CCcccccCC-c--hhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 636 G-GLLDS-KGYGIAMPT-S--KFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 636 ~-~~~~~-~~~~~a~~k-~--~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
. ..... .+++++++| . +|++.+|.+|.++.+ +|.+.+|+++|++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~in~~l~~l~~--~G~~~~i~~kw~~~ 265 (275)
T COG0834 216 LVFPGLSVEYLGIALRKGDDPELLEAVNKALKELKA--DGTLQKISDKWFGP 265 (275)
T ss_pred eeccCCCcceeEEEeccCCcHHHHHHHHHHHHHHHh--CccHHHHHHHhcCc
Confidence 2 23333 688999999 3 899999999999999 99999999999873
No 103
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=99.56 E-value=1.2e-14 Score=146.11 Aligned_cols=210 Identities=25% Similarity=0.349 Sum_probs=159.4
Q ss_pred eeeee--cCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEec
Q psy16206 418 LRVLF--QGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICD 494 (821)
Q Consensus 418 lrVgv--~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~ 494 (821)
||||+ .++||.+.+.++ .+ |+.+|+++.+.+++|++++++.. +|.+++.++.+|++|++++.
T Consensus 2 l~v~~~~~~~p~~~~~~~g--~~~G~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~ 66 (219)
T smart00062 2 LRVGTNGDYPPFSFADEDG--ELTGFDVDLAKAIAKELGLKVEFVEV-------------SFDNLLTALKSGKIDVVAAG 66 (219)
T ss_pred EEEEecCCCCCcEEECCCC--CcccchHHHHHHHHHHhCCeEEEEec-------------cHHHHHHHHHCCcccEEecc
Confidence 44555 899999977665 78 99999999999999999999854 68999999999999999887
Q ss_pred cccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecC
Q psy16206 495 LTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKN 574 (821)
Q Consensus 495 ~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (821)
...+++|.+.+.|+.|++....+++++++.+ ..++ +.++..+..+ ..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~dL~g~~i~~-------~~g----------------------- 114 (219)
T smart00062 67 MTITPERAKQVDFSDPYYKSGQVILVRKDSP-IKSL-EDLKGKKVAV-------VAG----------------------- 114 (219)
T ss_pred ccCCHHHHhheeeccceeeceeEEEEecCCC-CCCh-HHhCCCEEEE-------ecC-----------------------
Confidence 7778899999999999999999999998765 2232 2233222111 001
Q ss_pred CChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc--CCceeecceecC-CCcccccCC-
Q psy16206 575 SNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN--CDLMQVGGLLDS-KGYGIAMPT- 650 (821)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~a~~k- 650 (821)
..+...............+.+..+++.++.+ |++|+++.+...+.+...+. +.+..+...... .++++++++
T Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
T smart00062 115 ---TTGEELLKKLYPEAKIVSYDSQAEALAALKA-GRADAAVADAPALAALVKQHGLPELKIVGDPLDTPEGYAFAVRKG 190 (219)
T ss_pred ---ccHHHHHHHhCCCceEEEcCCHHHHHHHhhc-CcccEEEeccHHHHHHHHhcCCCceeeccCCCCCCcceEEEEECC
Confidence 1122222222112223356677889999998 99999999999888887765 466666555544 788999999
Q ss_pred -chhhcccccceeEEEEeecCCccccccCCC
Q psy16206 651 -SKFLAKFSFGFAKLRVLFQGEPYMMKNPET 680 (821)
Q Consensus 651 -~~l~~~in~al~~l~~~~~g~~~~i~~k~~ 680 (821)
+++.+.++++|.++.+ ++++++|++||+
T Consensus 191 ~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~ 219 (219)
T smart00062 191 DPELLDKINKALKELKA--DGTLKKIYEKWF 219 (219)
T ss_pred CHHHHHHHHHHHHHHHh--CchHHHHHhccC
Confidence 5899999999999999 999999999985
No 104
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=99.51 E-value=2.5e-14 Score=146.10 Aligned_cols=210 Identities=13% Similarity=0.075 Sum_probs=136.9
Q ss_pred eeeee--cCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEec
Q psy16206 418 LRVLF--QGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICD 494 (821)
Q Consensus 418 lrVgv--~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~ 494 (821)
||||+ .+|||.+. .. |+++||++++++++|++++++..+. .|..++..+++|++|++++
T Consensus 2 l~v~~~~~~~P~~~~------~~~G~~~el~~~i~~~~g~~i~~~~~~~-----------~~~~~~~~l~~g~~Di~~~- 63 (232)
T TIGR03871 2 LRVCADPNNLPFSNE------KGEGFENKIAQLLADDLGLPLEYTWFPQ-----------RRGFVRNTLNAGRCDVVIG- 63 (232)
T ss_pred eEEEeCCCCCCccCC------CCCchHHHHHHHHHHHcCCceEEEecCc-----------chhhHHHHHhcCCccEEEe-
Confidence 34444 79999874 23 9999999999999999999986641 2444677999999999865
Q ss_pred cccchhhhcceeecccceeeceEEEEEcCCCC-CCCccc-ccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEee
Q psy16206 495 LTITSERRAAVDFTMPFMTLGISILYRKPAKK-QPDLFS-FLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSA 572 (821)
Q Consensus 495 ~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~-~~~~~~-~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (821)
+++|.+.++||.||+..+.++++++++.. ..++.+ .+...+ | ++..+.....++.....
T Consensus 64 ---~~~r~~~~~fs~py~~~~~~lv~~~~~~~~~~~~~d~~l~g~~--V-----~v~~g~~~~~~l~~~~~--------- 124 (232)
T TIGR03871 64 ---VPAGYEMVLTTRPYYRSTYVFVTRKDSLLDVKSLDDPRLKKLR--I-----GVFAGTPPAHWLARHGL--------- 124 (232)
T ss_pred ---ccCccccccccCCcEeeeEEEEEeCCCcccccchhhhhhcCCe--E-----EEEcCChHHHHHHhcCc---------
Confidence 46788999999999999999999988531 122111 022211 1 11111111111111000
Q ss_pred cCCChHHHHHHHHhhhccCCc---ccccCchhHHHHHHhccCceEEEecccchhhhhhhc-CCceeeccee------cCC
Q psy16206 573 KNSNVSLYQRMHSAMESSRPS---VFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN-CDLMQVGGLL------DSK 642 (821)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~-~~~~~~~~~~------~~~ 642 (821)
...+...... ....+..+++.+|.. |++|+++.+..++.+++++. ..+.+..... ...
T Consensus 125 -----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~-G~~Da~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (232)
T TIGR03871 125 -----------VENVVGYSLFGDYRPESPPGRMVEDLAA-GEIDVAIVWGPIAGYFAKQAGPPLVVVPLLPEDGGIPFDY 192 (232)
T ss_pred -----------ccccccccccccccccCCHHHHHHHHHc-CCcCEEEeccHHHHHHHHhCCCCceeeccccCCCCCCccc
Confidence 0000000000 012367899999998 99999999999998888764 3444433221 123
Q ss_pred CcccccCC--chhhcccccceeEEEEeecCCccccccCCC
Q psy16206 643 GYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPET 680 (821)
Q Consensus 643 ~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~ 680 (821)
++++++++ ++|++.+|++|.+++. ++.+|++||.
T Consensus 193 ~~~~~~~~~~~~l~~~~n~~l~~~~~----~~~~i~~kyg 228 (232)
T TIGR03871 193 RIAMGVRKGDKAWKDELNAVLDRRQA----EIDAILREYG 228 (232)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHH----HHHHHHHHcC
Confidence 56788898 7899999999998643 6888888883
No 105
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=99.35 E-value=1.3e-10 Score=120.74 Aligned_cols=207 Identities=17% Similarity=0.161 Sum_probs=155.1
Q ss_pred cEEEEeCCC-c----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcch
Q psy16206 2 KIVGIFGPN-E----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~-~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~ 76 (821)
+||+++|.+ . .....+++.|++++ |..+++.+.| .++++....+.+.++..+++++|||+.++..
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~ 70 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEI---------GRGLEVILAD-SQSDPERALEALRDLIQQGVDGIIGPPSSSS 70 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHh---------CCceEEEEec-CCCCHHHHHHHHHHHHHcCCCEEEecCCCHH
Confidence 699999988 2 55667777777776 2358888888 4478888888899999889999999999877
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecC-CchhHHHHHHHh
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETH-DNLVYLQQVLEN 155 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~-~~~~~~~~~~~~ 155 (821)
...+...+...++|+|++...... ...+++++++.|++...++.+++++.+++|+++++++.+. .......+.+++
T Consensus 71 ~~~~~~~~~~~~ip~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 147 (269)
T cd01391 71 ALAVVELAAAAGIPVVSLDATAPD---LTGYPYVFRVGPDNEQAGEAAAEYLAEKGWKRVALIYGDDGAYGRERLEGFKA 147 (269)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCc---cCCCceEEEEcCCcHHHHHHHHHHHHHhCCceEEEEecCCcchhhHHHHHHHH
Confidence 766788899999999998665443 1156789999999999999999999999999999999877 433333333322
Q ss_pred -cCCCCCcCCCCCCeEEEE-EcCCCC-CChHHHHHHhhcC-CCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEec
Q psy16206 156 -AHDDDKEIRPGRPSVTIR-QLPPDT-DDYRPLLKEIKNS-SESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 156 -~~~~~~~~~~~g~~v~~~-~~~~~~-~d~~~~l~~lk~~-~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
.. ..+..+... ..+... .++....+.+++. ++++|++.+. ..+..+++++.+.|+...++.|+..+
T Consensus 148 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~-~~a~~~~~~~~~~g~~~~~~~ii~~~ 217 (269)
T cd01391 148 ALK-------KAGIEVVAIEYGDLDTEKGFQALLQLLKAAPKPDAIFACND-EMAAGALKAAREAGLTPGDISIIGFD 217 (269)
T ss_pred HHH-------hcCcEEEeccccCCCccccHHHHHHHHhcCCCCCEEEEcCc-hHHHHHHHHHHHcCCCCCCCEEEecc
Confidence 22 223333322 233322 5788888888877 6888888776 88899999999999984556666655
No 106
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]. It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A ....
Probab=99.20 E-value=1.5e-11 Score=94.06 Aligned_cols=59 Identities=46% Similarity=0.972 Sum_probs=47.6
Q ss_pred CceeecCC-----CCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHc
Q psy16206 426 PYMMKNPE-----TGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE 485 (821)
Q Consensus 426 P~~~~~~~-----~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 485 (821)
||++...+ ++.++ |||+||+++||+.+||+|++..++|++||+.++ +++|++|+++|.+
T Consensus 1 Pfvm~~~~~~~~~g~~~~eGyciDll~~la~~l~F~y~i~~~~Dg~yG~~~~-~g~W~GmiGeli~ 65 (65)
T PF10613_consen 1 PFVMLKEDGENLTGNDRYEGYCIDLLEELAEELNFTYEIYLVPDGKYGSKNP-NGSWNGMIGELIR 65 (65)
T ss_dssp TTBEE-TTSSGSBGGGGEESHHHHHHHHHHHHHT-EEEEEE-TTS--EEBET-TSEBEHHHHHHHT
T ss_pred CeEEEecCCcccCCCccEEEEHHHHHHHHHHHcCCeEEEEECCCCCCcCcCC-CCcCcCHHHHhcC
Confidence 78774332 34578 999999999999999999999999999999999 9999999999864
No 107
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=99.16 E-value=3e-09 Score=119.97 Aligned_cols=300 Identities=15% Similarity=0.175 Sum_probs=148.9
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~ 75 (821)
+|++++|++| +.++.||..|. ++. .+...++.++|++ .+ .......+.+.+|+..||||....
T Consensus 221 ~IavLLPlsG~~a~~~~aI~~G~~aA~---~~~-----~~~~~~l~~~Dt~-~~--~~~~~~~~a~~~ga~~ViGPL~k~ 289 (536)
T PF04348_consen 221 RIAVLLPLSGRLARAGQAIRDGFLAAY---YAD-----ADSRPELRFYDTN-AD--SADALYQQAVADGADFVIGPLLKS 289 (536)
T ss_dssp -EEEEE--SSTTHHHHHHHHHHHHHHH-----------TT--S-EEEEETT-TS---HHHHHHHHHHTT--EEE---SHH
T ss_pred CEEEEeCCCCchhHHHHHHHHHHHHhh---ccc-----ccCCCceEEecCC-CC--CHHHHHHHHHHcCCCEEEcCCCHH
Confidence 6999999999 55677777777 112 1235788999955 34 233456667778999999999998
Q ss_pred hHHHHHHHhcc--CCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHH--
Q psy16206 76 NRNIIESMCQM--FDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQ-- 151 (821)
Q Consensus 76 ~~~~v~~i~~~--~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~-- 151 (821)
.+.+++..-.. -.||++.....+.. .....-|.|.+.|.+ .++-+++.+..-|+++..|++.+++...++.+
T Consensus 290 ~V~~l~~~~~~~~~~vp~LaLN~~~~~--~~~~~l~~f~LspEd--EA~q~A~~a~~~g~~~alvl~p~~~~g~R~~~aF 365 (536)
T PF04348_consen 290 NVEALAQLPQLQAQPVPVLALNQPDNS--QAPPNLYQFGLSPED--EARQAAQKAFQDGYRRALVLAPQNAWGQRMAEAF 365 (536)
T ss_dssp HHHHHHH-GG-GGTT-EEEES---TT------TTEEE----HHH--HHHHHHHHHHHTT--S-EEEEESSHHHHHHHHHH
T ss_pred HHHHHHhcCcccccCCceeeccCCCcc--cCccceEEEeCCcHH--HHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHH
Confidence 88887665442 37999998644332 123455777777765 68899999999999999999999985554444
Q ss_pred --HHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEec
Q psy16206 152 --VLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 152 --~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
.++..+ |..+....+.. ..++...++.-.....|.|++...+.+++.+--...-. ..+.--+|-.+.
T Consensus 366 ~~~W~~~g---------g~~~~~~~~~~-~~~~~~~i~~r~r~d~D~ifl~a~~~~ar~ikP~l~~~-~a~~lPvyatS~ 434 (536)
T PF04348_consen 366 NQQWQALG---------GQVAEVSYYGS-PADLQAAIQPRRRQDIDAIFLVANPEQARLIKPQLDFH-FAGDLPVYATSR 434 (536)
T ss_dssp HHHHHHHH---------SS--EEEEESS-TTHHHHHHHHS--TT--EEEE---HHHHHHHHHHHTT--T-TT-EEEE-GG
T ss_pred HHHHHHcC---------CCceeeEecCC-HHHHHHHHhhcCCCCCCEEEEeCCHHHHHHHhhhcccc-cCCCCCEEEecc
Confidence 444444 44445555653 67888888866667899999999999888776655432 222222222222
Q ss_pred ccccccccccCcccccCCceeeEEEEe---ecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHH
Q psy16206 230 TSYWINAHTVDFQDFQPGYANITTVRM---INPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAA 306 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~A 306 (821)
......+ .......+|+.-+.. .....+..+.+...|.+.. .......+++|||..++.+-
T Consensus 435 ----~~~g~~~-~~~~~dL~gv~f~d~Pwll~~~~~~~~~~~~~~~~~~-----------~~~~RL~AlG~DA~~L~~~l 498 (536)
T PF04348_consen 435 ----SYSGSPN-PSQDRDLNGVRFSDMPWLLDPNSPLRQQLAALWPNAS-----------NSLQRLYALGIDAYRLAPRL 498 (536)
T ss_dssp ----G--HHT--HHHHHHTTT-EEEE-GGGG---SHHHHHHH-HHTTT------------HHHHHHHHHHHHHHHHHHTH
T ss_pred ----ccCCCCC-cchhhhhcCCEEeccccccCCCchHHHHHHhhccCCc-----------cHHHHHHHHHHHHHHHHHHH
Confidence 1100000 111112344444332 1223333333333332211 11233456678877665321
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEee
Q psy16206 307 LQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVS 371 (821)
Q Consensus 307 l~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~ 371 (821)
. -+..+.+..+.|+||.+++|+ +|. ........++++
T Consensus 499 -~-------------------------~l~~~~~~~~~G~TG~L~~~~-~g~-i~R~l~wa~f~~ 535 (536)
T PF04348_consen 499 -P-------------------------QLRQFPGYRLDGLTGQLSLDE-DGR-IERQLSWAQFRN 535 (536)
T ss_dssp -H-------------------------HHHHSTT--EEETTEEEEE-T-T-B-EEEE-EEEEEET
T ss_pred -H-------------------------HHhhCCCCcccCCceeEEECC-CCe-EEEeecceeecC
Confidence 1 123334556899999999998 774 445555555444
No 108
>KOG1053|consensus
Probab=99.10 E-value=9.8e-11 Score=128.75 Aligned_cols=136 Identities=30% Similarity=0.576 Sum_probs=110.7
Q ss_pred ccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhc------------------cceeeee-----
Q psy16206 683 LYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQ------------------VDTFILF----- 739 (821)
Q Consensus 683 ~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------------~~~~~~~----- 739 (821)
..||+.|+++.+++.++|+|.+-.+.+.++|.- .+|.|+||+++++.+ +|+..+|
T Consensus 465 CkGfCIDiLkKlA~~v~FtYDLYlVtnGKhGkk--~ng~WnGmIGev~~~rA~MAVgSltINeeRSevVDFSvPFveTgI 542 (1258)
T KOG1053|consen 465 CKGFCIDILKKLARDVKFTYDLYLVTNGKHGKK--INGVWNGMIGEVVYQRADMAVGSLTINEERSEVVDFSVPFVETGI 542 (1258)
T ss_pred hhhhhHHHHHHHHhhcCcceEEEEecCCcccce--ecCcchhhHHHHHhhhhheeeeeeEechhhhccccccccccccce
Confidence 469999999999999999999999999988843 468999999999876 2333333
Q ss_pred -------------------hhhhhhhhhh---------------------------------------------------
Q psy16206 740 -------------------FIYSILFFIY--------------------------------------------------- 749 (821)
Q Consensus 740 -------------------~~~~~~~~~~--------------------------------------------------- 749 (821)
|-+++|.+|+
T Consensus 543 sVmV~rsngtvspsAFLePfs~svWVmmFVm~livaai~vFlFEy~SPvgyn~~l~~gkkpggp~FtigkaiwllwaLvF 622 (1258)
T KOG1053|consen 543 SVMVARSNGTVSPSAFLEPFSPSVWVMMFVMCLIVAAITVFLFEYFSPVGYNRNLANGKKPGGPSFTIGKAIWLLWALVF 622 (1258)
T ss_pred EEEEEecCCccCchhhcCCcchHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCCCcceehhhHHHHHHHHHh
Confidence 3344444330
Q ss_pred -----cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhc------CceeEEEEecCccccc
Q psy16206 750 -----TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKA------GRIKYGCVEMGSTRNF 818 (821)
Q Consensus 750 -----~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~------~~~~~~~~~~~~~~~~ 818 (821)
...|+...+|+...+|-||++|+.++|||||+|||..++....+..+.|=.-| +..++||+.+|||+..
T Consensus 623 nnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~~~d~vSGlsD~KfqrP~dq~PpFRFGTVpngSTE~n 702 (1258)
T KOG1053|consen 623 NNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYYDTVSGLSDPKFQRPHDQYPPFRFGTVPNGSTERN 702 (1258)
T ss_pred CCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCcccccCccccCCCcccccCCCCchhhh
Confidence 02578899999999999999999999999999999999999888888876532 3589999999999987
Q ss_pred cc
Q psy16206 819 FK 820 (821)
Q Consensus 819 ~~ 820 (821)
.|
T Consensus 703 iR 704 (1258)
T KOG1053|consen 703 IR 704 (1258)
T ss_pred HH
Confidence 54
No 109
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=98.79 E-value=2.4e-09 Score=100.78 Aligned_cols=54 Identities=46% Similarity=0.922 Sum_probs=45.9
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcC
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAG 803 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~ 803 (821)
...|++.+.|++.+.||+++++++++|||+|+|+||+|+.+++|+|++||+++.
T Consensus 62 ~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~ 115 (148)
T PF00060_consen 62 SIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKYEPPIDSLEDLANSG 115 (148)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHTSS-SSHHHHHTHS
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCCHHHHHHCC
Confidence 478999999999999999999999999999999999999999999999999865
No 110
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=98.72 E-value=8.6e-08 Score=99.26 Aligned_cols=201 Identities=13% Similarity=0.068 Sum_probs=130.6
Q ss_pred ccCceEEEEeeccceeeeeecCCCceeecCCCCCceeeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHH
Q psy16206 403 IENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGE 482 (821)
Q Consensus 403 ~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 482 (821)
.++++|+|++.+ .++|+.+. +...++.+.+++++|++++++... +|+.++..
T Consensus 29 ~~~~~l~vg~~~--------~~~~~~~~--------~~~~~l~~~l~~~~g~~v~~~~~~------------~~~~~~~~ 80 (254)
T TIGR01098 29 AVPKELNFGILP--------GENASNLT--------RRWEPLADYLEKKLGIKVQLFVAT------------DYSAVIEA 80 (254)
T ss_pred cCCCceEEEECC--------CCCHHHHH--------HHHHHHHHHHHHHhCCcEEEEeCC------------CHHHHHHH
Confidence 345678888886 66665432 456799999999999999998643 79999999
Q ss_pred HHcCCcceEEeccccch---hhhcceeecccceee------ceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHH
Q psy16206 483 LQEQRADLAICDLTITS---ERRAAVDFTMPFMTL------GISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVS 553 (821)
Q Consensus 483 l~~g~~Di~~~~~~~t~---~R~~~~~fS~p~~~~------~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~ 553 (821)
+.+|++|+++.+..... +|.+...|+.|+... ..++++++++. ..++. .++..+ +
T Consensus 81 l~~g~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvv~~d~~-i~~~~-dL~gk~--I------------ 144 (254)
T TIGR01098 81 MRFGRVDIAWFGPSSYVLAHYRANAEVFALTAVSTDGSPGYYSVIIVKADSP-IKSLK-DLKGKT--F------------ 144 (254)
T ss_pred HHcCCccEEEECcHHHHHHHHhcCCceEEeeccccCCCCceEEEEEEECCCC-CCChH-HhcCCE--E------------
Confidence 99999999986554333 566667888876643 35788887754 33332 223221 1
Q ss_pred HHHHhhhhcCCCcceeEeecCCChH-H--HHHHHHhhh--cc---CCcccccCchhHHHHHHhccCceEEEecccchhhh
Q psy16206 554 LLLFFLARISSGSRLRYSAKNSNVS-L--YQRMHSAME--SS---RPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYE 625 (821)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~--~~---~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~ 625 (821)
++........ . ...+.+... .. .......+..++++++.. |++|+++.+...+..+
T Consensus 145 ---------------~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~al~~-G~~Da~~~~~~~~~~~ 208 (254)
T TIGR01098 145 ---------------AFGDPASTSGYLVPRYQLKKEGGLDADGFFSEVVFSGSHDASALAVAN-GKVDAATNNSSAIGRL 208 (254)
T ss_pred ---------------EeeCCCCccchHhHHHHHHHhcCCChHHhhhheeecCchHHHHHHHHc-CCCCeEEecHHHHHHH
Confidence 1110000000 0 001111100 00 112234456788999998 9999999999888777
Q ss_pred hhhcC----CceeecceecCCCcccccCC---chhhcccccceeE
Q psy16206 626 VEKNC----DLMQVGGLLDSKGYGIAMPT---SKFLAKFSFGFAK 663 (821)
Q Consensus 626 ~~~~~----~~~~~~~~~~~~~~~~a~~k---~~l~~~in~al~~ 663 (821)
.+++. +++++.......+++++++| +++.+.||++|..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 253 (254)
T TIGR01098 209 KKRGPSDMKKVRVIWKSPLIPNDPIAVRKDLPPELKEKIRDAFLT 253 (254)
T ss_pred HHhCccchhheEEEEecCCCCCCCEEEECCCCHHHHHHHHHHHhh
Confidence 66542 57777766666678999999 5699999998864
No 111
>KOG1054|consensus
Probab=98.61 E-value=2.7e-08 Score=105.31 Aligned_cols=106 Identities=47% Similarity=0.723 Sum_probs=101.5
Q ss_pred cCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc-CCceeecceecCCCcccccCC-
Q psy16206 573 KNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN-CDLMQVGGLLDSKGYGIAMPT- 650 (821)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~k- 650 (821)
+.+....|++||..|.+..+.+++.+..|++.+|++++.-+||+.++...+|.-++. |+-..++..+++.+|++|.||
T Consensus 683 r~Skiavy~kMW~yM~SaepsVFv~t~aeGv~rVRksKGkyAfLLEsTmNey~eqRkPCDTMKVGgNLds~GYGiATp~G 762 (897)
T KOG1054|consen 683 RRSKIAVYEKMWTYMKSAEPSVFVRTTAEGVARVRKSKGKYAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKG 762 (897)
T ss_pred hhhhHHHHHHHHHHHhcCCcceeeehhhhHHHHHHhcCCceEeehHhhhhhhhhccCCccceecccccCCcceeecCCCC
Confidence 667788999999999999999999999999999999899999999999999998875 899999999999999999999
Q ss_pred chhhcccccceeEEEEeecCCccccccCCC
Q psy16206 651 SKFLAKFSFGFAKLRVLFQGEPYMMKNPET 680 (821)
Q Consensus 651 ~~l~~~in~al~~l~~~~~g~~~~i~~k~~ 680 (821)
+.|+..+|.|+.++.+ .|.+++|.+||+
T Consensus 763 sslr~~vNLAvLkL~E--~G~LdKLkNKWW 790 (897)
T KOG1054|consen 763 SSLRNAVNLAVLKLNE--QGLLDKLKNKWW 790 (897)
T ss_pred cccccchhhhhhhhcc--cchHHHhhhhhc
Confidence 9999999999999999 999999999997
No 112
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=98.48 E-value=9.3e-06 Score=84.18 Aligned_cols=191 Identities=13% Similarity=0.095 Sum_probs=128.7
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
|||.+++.++ .....+++.++++ .+ +++.+.+.. +++....+.+.+++.++++++|+..+....
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~----~g-------~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~ 68 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA----AG-------YQVLLANSQ-NDAEKQLSALENLIARGVDGIIIAPSDLTA 68 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH----cC-------CeEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEecCCCcc
Confidence 6999999865 4455556555555 22 567777734 677777888888888899999987766554
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC--c----hhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD--N----LVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~--~----~~~~~~ 151 (821)
......+...++|+|.+...... ..+++++.+.+...+..+++.+...+-++++++..+.. . ...+++
T Consensus 69 ~~~~~~l~~~~ip~v~~~~~~~~------~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~ 142 (264)
T cd01537 69 PTIVKLARKAGIPVVLVDRDIPD------GDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKD 142 (264)
T ss_pred hhHHHHhhhcCCCEEEeccCCCC------CcccceEecCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHH
Confidence 44567778899999998654331 24567788888889999999999989999999987644 2 333444
Q ss_pred HHHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 152 VLENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
.+++.+ ...+. ......+..+....+.++.+.+ +++++.. ....+..+++++.+.|+.-
T Consensus 143 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~-~~~~a~~~~~~~~~~g~~i 204 (264)
T cd01537 143 ALKEAG---------PIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIFAA-NDDMALGALRALREAGLRV 204 (264)
T ss_pred HHHHcC---------CcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEEc-CcHHHHHHHHHHHHhCCCC
Confidence 443332 12221 1223333455667777877776 4555543 4456667889999998853
No 113
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb
Probab=98.40 E-value=5.9e-08 Score=89.46 Aligned_cols=84 Identities=48% Similarity=0.688 Sum_probs=77.7
Q ss_pred ccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeecceecCCCcccccCC-chhhcccccceeEEEEeecCCc
Q psy16206 594 VFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGGLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEP 672 (821)
Q Consensus 594 ~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~ 672 (821)
..+++..+++.+|.. |+ ||++.|...+.+++++.|++.+++..+..++++++++| ++|++.||.+|.++.+ +|.+
T Consensus 49 ~~~~~~~~~~~~l~~-g~-da~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~k~~~l~~~vn~~l~~l~~--~G~~ 124 (134)
T smart00079 49 VFVKSYAEGVQRVRV-SN-YAFLMESTYLDYELSQNCDLMTVGENFGRKGYGIAFPKGSPLRDDLSRAILKLSE--SGEL 124 (134)
T ss_pred CCCCCHHHHHHHHHc-CC-CEEEeehHhHHHHHhCCCCeEEcCcccCCCceEEEecCCCHHHHHHHHHHHHHHh--cCcH
Confidence 467788999999998 89 99999999999988878888888888888999999999 9999999999999999 9999
Q ss_pred cccccCCCC
Q psy16206 673 YMMKNPETG 681 (821)
Q Consensus 673 ~~i~~k~~g 681 (821)
.+|++||++
T Consensus 125 ~~l~~kw~~ 133 (134)
T smart00079 125 QKLENKWWK 133 (134)
T ss_pred HHHHHhhcc
Confidence 999999986
No 114
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=98.30 E-value=0.00012 Score=75.81 Aligned_cols=191 Identities=14% Similarity=0.025 Sum_probs=123.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++.|... .....+++.+.++ . | +++.+.+ ...++....+..++++.+++++|+....+...
T Consensus 1 ~i~~v~~~~~~~~~~~~~~g~~~~~~~---~------g--~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~ 68 (264)
T cd06267 1 TIGVIVPDISNPFFAELLRGIEEAARE---A------G--YSVLLCN-SDEDPEKEREALELLLSRRVDGIILAPSRLDD 68 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH---c------C--CEEEEEc-CCCCHHHHHHHHHHHHHcCcCEEEEecCCcch
Confidence 5899998754 3344555554443 2 2 3455566 33778888888999998899999876666555
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~ 151 (821)
.. ...+...++|+|....... . +.+..+.+++...++.+++.+...|.+++++++.+.. . ...+++
T Consensus 69 ~~-~~~~~~~~ipvv~~~~~~~----~---~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~ 140 (264)
T cd06267 69 EL-LEELAALGIPVVLVDRPLD----G---LGVDSVGIDNRAGAYLAVEHLIELGHRRIAFIGGPPDLSTARERLEGYRE 140 (264)
T ss_pred HH-HHHHHHcCCCEEEeccccc----C---CCCCEEeeccHHHHHHHHHHHHHCCCceEEEecCCCccchHHHHHHHHHH
Confidence 55 6668899999999854322 1 3455667777778888888888889999999987653 1 233344
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
.+++.+ .....+.....+.+..+....++++.+.. +++|+. .....+..+++++++.|+..
T Consensus 141 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~-~~~~~a~~~~~al~~~g~~~ 203 (264)
T cd06267 141 ALEEAG-------IPLDEELIVEGDFSEESGYEAARELLASGERPTAIFA-ANDLMAIGALRALRELGLRV 203 (264)
T ss_pred HHHHcC-------CCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEEE-cCcHHHHHHHHHHHHhCCCC
Confidence 444433 10011111222222456677787777665 555554 34566778888899999853
No 115
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=98.24 E-value=5.7e-05 Score=78.92 Aligned_cols=193 Identities=14% Similarity=0.017 Sum_probs=124.1
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc-ch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI-EN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s-~~ 76 (821)
|||++++... ..+..+++.+.++ . + +.|+++++.+.|++ .|+....+...+++.++|++||...+. ..
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~---~-~--~~g~~~~l~i~~~~-~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 73 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKE---L-K--KAGLISEFIVTSAD-GDVAQQIADIRNLIAQGVDAIIINPASPTA 73 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHh---h-h--ccCCeeEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 7999997655 3445555555443 2 1 23567888998844 788888889999999999999975444 22
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---c---hhH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD---N---LVY 148 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~---~~~ 148 (821)
...+...+...++|+|....... . +...++.+++...+..+++.+... |-++++++..... . ...
T Consensus 74 ~~~~l~~~~~~~iPvv~~~~~~~----~---~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (272)
T cd06300 74 LNPVIEEACEAGIPVVSFDGTVT----T---PCAYNVNEDQAEFGKQGAEWLVKELGGKGNVLVVRGLAGHPVDEDRYAG 146 (272)
T ss_pred hHHHHHHHHHCCCeEEEEecCCC----C---CceeEecCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchHHHHHH
Confidence 23334556678999999853321 1 346678888888889999888776 8899999974321 2 334
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEEE-cCCCCCChHHHHHHhhcCCC--cEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNSSE--SHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~~~--~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+++.+++.+ +..+.... .+.+.++..+.+.++.++.+ ++|+... .. +..+++++++.|+.
T Consensus 147 ~~~a~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~-d~-A~g~~~al~~~g~~ 209 (272)
T cd06300 147 AKEVLKEYP---------GIKIVGEVYGDWDQAVAQKAVADFLASNPDVDGIWTQG-GD-AVGAVQAFEQAGRD 209 (272)
T ss_pred HHHHHHHCC---------CcEEEeecCCCCCHHHHHHHHHHHHHhCCCcCEEEecC-CC-cHHHHHHHHHcCCC
Confidence 444444332 24443221 12223445667777766654 4444333 34 88899999999984
No 116
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=98.21 E-value=0.00018 Score=74.67 Aligned_cols=193 Identities=11% Similarity=0.035 Sum_probs=121.6
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc-ch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI-EN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s-~~ 76 (821)
+||++.|... .....+++.+.++ . | +++.+.+++ .++....+.+.+++.++|++||+..++ ..
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~----~-----g--~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~ 68 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKE----L-----G--VELIVLDAQ-NDVSKQIQQIEDLIAQGVDGIIISPVDSAA 68 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHh----c-----C--ceEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchh
Confidence 6899998654 4566666666655 1 2 566677744 678888888888888899998864333 33
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---chhHHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD---NLVYLQQ 151 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~~~~~~~ 151 (821)
.......+...++|+|........ ...+..+.+++...+..+++.+... |-+++++++.+.+ .....+.
T Consensus 69 ~~~~~~~l~~~~ip~V~~~~~~~~------~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~g 142 (267)
T cd01536 69 LTPALKKANAAGIPVVTVDSDIDG------GNRLAYVGTDNYEAGRLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKG 142 (267)
T ss_pred HHHHHHHHHHCCCcEEEecCCCCc------cceeEEEecCHHHHHHHHHHHHHHHhCCCceEEEEEcccccchHHHHHHH
Confidence 333445566789999998543321 2334556777777788888888776 8899999987543 2223333
Q ss_pred HHHhcCCCCCcCCCC-CCeEEEEE-cCCCCCChHHHHHHhhcCCCcE-EEEeCChhHHHHHHHHHHHcccc
Q psy16206 152 VLENAHDDDKEIRPG-RPSVTIRQ-LPPDTDDYRPLLKEIKNSSESH-ILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~-g~~v~~~~-~~~~~~d~~~~l~~lk~~~~~~-ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.+... .. +..+.... ......+..+.+.++.+..++. +++.+....+..+++++++.|+.
T Consensus 143 f~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~~~~~~l~~~g~~ 206 (267)
T cd01536 143 FRDALK-------EYPDIEIVAVQDGNWDREKALQAMEDLLQANPDIDAIFAANDSMALGAVAALKAAGRK 206 (267)
T ss_pred HHHHHH-------hCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCccEEEEecCCchHHHHHHHHhcCCC
Confidence 333333 22 34433222 2222234567777776655433 33444456677799999999985
No 117
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=98.19 E-value=9.4e-05 Score=77.67 Aligned_cols=200 Identities=10% Similarity=0.005 Sum_probs=123.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIE 81 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~ 81 (821)
|||++.+.+..-...-+.-..+.+++.+. ..|.++++.+.|++ +++....+...++++++|++||+..++. ....
T Consensus 1 ~igv~~~~~~~~~~~~~~gi~~~~~~~g~--~~g~~v~l~~~~~~-~~~~~~~~~~~~l~~~~vd~iI~~~~~~-~~~~- 75 (281)
T cd06325 1 KVGILQLVEHPALDAARKGFKDGLKEAGY--KEGKNVKIDYQNAQ-GDQSNLPTIARKFVADKPDLIVAIATPA-AQAA- 75 (281)
T ss_pred CeEEecCCCCcchHHHHHHHHHHHHHhCc--cCCceEEEEEecCC-CCHHHHHHHHHHHHhcCCCEEEEcCcHH-HHHH-
Confidence 79999987663333334444456666665 34678999999944 7888888889999888999999865442 2222
Q ss_pred HHhccCCCceeeeccCCCCCC---CCCC--CccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC--chhHHHHH
Q psy16206 82 SMCQMFDIPHVEAFWDPNKYF---IPTN--GVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD--NLVYLQQV 152 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~~~~---~~~~--~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~--~~~~~~~~ 152 (821)
.....++|+|.......... +... ..+. +..++...+..+++++... |.+++++++++.. .....+.+
T Consensus 76 -~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~r~~g~ 152 (281)
T cd06325 76 -ANATKDIPIVFTAVTDPVGAGLVKSLEKPGGNV--TGVSDLVPVETQLELLKKLLPDAKTVGVLYNPSEANSVVQVKEL 152 (281)
T ss_pred -HHcCCCCCEEEEecCCccccccccccccCCCce--eCeecccchHHHHHHHHHHCCCCcEEEEEeCCCCccHHHHHHHH
Confidence 25678999998854322100 0011 1223 2334445567777888765 9999999986543 22333444
Q ss_pred HHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 153 LENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
.+... ..|..+..... ....++...++++.+ ++++|++.. ...+..+++++.++|+.
T Consensus 153 ~~~~~-------~~g~~~~~~~~-~~~~~~~~~~~~~~~-~~dai~~~~-d~~a~~~~~~~~~~~~~ 209 (281)
T cd06325 153 KKAAA-------KLGIEVVEATV-SSSNDVQQAAQSLAG-KVDAIYVPT-DNTVASAMEAVVKVANE 209 (281)
T ss_pred HHHHH-------hCCCEEEEEec-CCHHHHHHHHHHhcc-cCCEEEEcC-chhHHhHHHHHHHHHHH
Confidence 44443 34555443222 224566777777764 357766544 45667788888888763
No 118
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]. It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A ....
Probab=98.19 E-value=9.3e-07 Score=67.87 Aligned_cols=49 Identities=49% Similarity=0.971 Sum_probs=42.3
Q ss_pred CccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhh
Q psy16206 682 ELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE 731 (821)
Q Consensus 682 ~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 731 (821)
.+.||+.|+++.+++.++|++++..+.+..+|..++ +|+|+||++++++
T Consensus 17 ~~eGyciDll~~la~~l~F~y~i~~~~Dg~yG~~~~-~g~W~GmiGeli~ 65 (65)
T PF10613_consen 17 RYEGYCIDLLEELAEELNFTYEIYLVPDGKYGSKNP-NGSWNGMIGELIR 65 (65)
T ss_dssp GEESHHHHHHHHHHHHHT-EEEEEE-TTS--EEBET-TSEBEHHHHHHHT
T ss_pred cEEEEHHHHHHHHHHHcCCeEEEEECCCCCCcCcCC-CCcCcCHHHHhcC
Confidence 468999999999999999999999999999999999 9999999999864
No 119
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=98.14 E-value=5.4e-05 Score=80.83 Aligned_cols=132 Identities=12% Similarity=0.065 Sum_probs=91.1
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
||+.++|++| .-++.||..|.. -+.. .++-..++.+.||+ . +.++.+...+.+ |+..|+||...
T Consensus 259 kiALLLPLtG~~a~~a~~IqdGF~aA~~-~~~~----~~~~~~~~~i~dT~-~---~~l~~i~aqaqq~G~~~VVGPLlK 329 (604)
T COG3107 259 KIALLLPLTGQAAVFARTIQDGFLAAKN-APAT----QTAQVAELKIYDTS-A---QPLDAILAQAQQDGADFVVGPLLK 329 (604)
T ss_pred heeEEeccCChhHHHHHHHHHHHHHhcc-Cccc----CCccccceeeccCC-c---ccHHHHHHHHHhcCCcEEeccccc
Confidence 7999999999 446677776654 1222 22323678888854 2 334455555555 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchh
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLV 147 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~ 147 (821)
...+++..- +...+|+++...++.. +....-..|...|.| .++..+..+-.-|.+...++...++..+
T Consensus 330 ~nVe~L~~~-~q~~i~vLALN~~~n~--r~~~~~cyfaLSPED--Ea~~AA~~l~~qG~R~plvlvPr~~lG~ 397 (604)
T COG3107 330 PNVEALLAS-NQQPIPVLALNQPENS--RNPAQLCYFALSPED--EARDAANHLWDQGKRNPLVLVPRNDLGD 397 (604)
T ss_pred hhHHHHHhC-cCCCCceeeecCCccc--cCcccceeeecChhH--HHHHHHHHHHHccccCceEEecchHHHH
Confidence 888876432 2277899988654332 233344567788877 5888889998899999999999887433
No 120
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=97.95 E-value=0.00092 Score=69.90 Aligned_cols=194 Identities=12% Similarity=0.031 Sum_probs=113.0
Q ss_pred cEEEEeCC-Cc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEE-EcCCCcch
Q psy16206 2 KIVGIFGP-NE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAI-FGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~-~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~ai-iGp~~s~~ 76 (821)
|||++.+. +. ..+..+++.+.++ . |+++.+...+ ...++..-.+....++.++|++| +.|..+..
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~---~------g~~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 70 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKK---L------GVSVDIQAAP-SEGDQQGQLSIAENMINKGYKGLLFSPISDVN 70 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHH---h------CCeEEEEccC-CCCCHHHHHHHHHHHHHhCCCEEEECCCChHH
Confidence 79999985 33 3344455555444 1 3455554444 33567666777888888899885 46654443
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---chhHHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD---NLVYLQQ 151 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~~~~~~~ 151 (821)
.......+...++|+|....... .... ..+.+++...++.+++++... |.++++++....+ ...+.+.
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~----~~~~---~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g 143 (275)
T cd06320 71 LVPAVERAKKKGIPVVNVNDKLI----PNAT---AFVGTDNKANGVRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEG 143 (275)
T ss_pred hHHHHHHHHHCCCeEEEECCCCC----Cccc---eEEecCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHH
Confidence 33444566788999998754221 1111 225667777788888888776 8899999875432 1222233
Q ss_pred HHHhcCCCCCcCCCC-CCeEEEEEc-CCCCCChHHHHHHhhcCCCcEEEE-eCChhHHHHHHHHHHHcccc
Q psy16206 152 VLENAHDDDKEIRPG-RPSVTIRQL-PPDTDDYRPLLKEIKNSSESHILL-DCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~-g~~v~~~~~-~~~~~d~~~~l~~lk~~~~~~ivl-~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.+... .+ |..+..... .....+....++++.+..++.-.+ ......+..+++++++.|+.
T Consensus 144 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~ 207 (275)
T cd06320 144 FTEAIK-------KASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNNDTMALGVVEAVKNAGKQ 207 (275)
T ss_pred HHHHHh-------hCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEECCchhHHHHHHHHHhcCCC
Confidence 333333 22 444432221 111234556677766554444333 33455566788888998875
No 121
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=97.92 E-value=7.1e-06 Score=85.88 Aligned_cols=163 Identities=12% Similarity=-0.031 Sum_probs=108.8
Q ss_pred cchHHHHHHHcCCcceEEeccccchhhhcceeeccc--ceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHH
Q psy16206 475 KWNGLIGELQEQRADLAICDLTITSERRAAVDFTMP--FMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGV 552 (821)
Q Consensus 475 ~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p--~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~ 552 (821)
+|+++...|..|++|++++++..+.+|.+.++|+.| |.....+++++++.+ ..+ .+.++..+..+ .
T Consensus 52 ~~~~i~~~L~sG~vDlgi~g~~~~~er~~~v~~~~~l~~~~~~lvvvvp~~~~-i~s-l~DL~Gk~ia~-------~--- 119 (287)
T PRK00489 52 RPDDIPGYVADGVVDLGITGEDLLEESGADVEELLDLGFGKCRLVLAVPEDSD-WQG-VEDLAGKRIAT-------S--- 119 (287)
T ss_pred CcHHHHHHHHcCCCCEEEcchHHHHHCCCCceEeeeccCCceEEEEEEECCCC-CCC-hHHhCCCEEEE-------c---
Confidence 689999999999999999999999999999999997 788888888888765 223 22333222111 0
Q ss_pred HHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCc
Q psy16206 553 SLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDL 632 (821)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~ 632 (821)
......+..+........+.+.+..++ .+.. |.+|+++....+...+.+. ++
T Consensus 120 -----------------------~~~~~~~~l~~~gi~~~iv~~~gs~ea--a~~~-G~aDaivd~~~~~~~l~~~--~L 171 (287)
T PRK00489 120 -----------------------YPNLTRRYLAEKGIDAEVVELSGAVEV--APRL-GLADAIVDVVSTGTTLRAN--GL 171 (287)
T ss_pred -----------------------CcHHHHHHHHHcCCceEEEECCCchhh--hhcC-CcccEEEeeHHHHHHHHHC--CC
Confidence 011111122111110111233444444 4444 9999998777777666653 57
Q ss_pred eeecceecCCCcccccCC----chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 633 MQVGGLLDSKGYGIAMPT----SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 633 ~~~~~~~~~~~~~~a~~k----~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
+.+ ........+++.+| +.+.+.+|.++.++ + |.+.++.+|||+.
T Consensus 172 ~~v-~~~~~~~~~li~~k~~~~~~~~~~i~~~l~~l-~---g~l~a~~~k~~~~ 220 (287)
T PRK00489 172 KIV-EVILRSEAVLIARKGWLDPEKQEKIDQLLTRL-Q---GVLRARESKYLMM 220 (287)
T ss_pred EEE-EeeeeeeEEEEEcccccChhHHHHHHHHHHHH-H---HHHHhhceEEEEE
Confidence 766 45555668888887 45778899998888 4 8999999999974
No 122
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.84 E-value=0.002 Score=67.31 Aligned_cols=190 Identities=8% Similarity=0.034 Sum_probs=109.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
+||++.+... ..+..+++.+.++ . | +++.+.+.+ .++....+...+++..++++|| +|..+..
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~---~------g--~~~~~~~~~-~~~~~~~~~i~~~~~~~~dgiii~~~~~~~ 68 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKA---L------G--YDAVELSAE-NSAKKELENLRTAIDKGVSGIIISPTNSSA 68 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHh---c------C--CeEEEecCC-CCHHHHHHHHHHHHhcCCCEEEEcCCchhh
Confidence 5899998644 3334444444333 2 2 344556633 6777777778888888888884 6665544
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC------CCCEEEEEEecCC---c--
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM------DWDTFTIIYETHD---N-- 145 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~------~w~~v~ii~~~~~---~-- 145 (821)
.......+...++|+|.....+. ...+...+.+++...+..+++++... |-++++++..... .
T Consensus 69 ~~~~l~~~~~~~ipvV~~~~~~~------~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~~~~~~~~~~~ 142 (277)
T cd06319 69 AVTLLKLAAQAKIPVVIADIGAE------GGDYVSYIKSDNYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQKRKNGQK 142 (277)
T ss_pred hHHHHHHHHHCCCCEEEEecCCC------CCceEEEEeeccHHHHHHHHHHHHHHHHhhCCCCCcEEEEeccCCCccHHH
Confidence 44555677788999998753221 11234445666655566666655443 6789999975322 2
Q ss_pred -hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCC--CCCChHHHHHHhhcCCCcE-EEEeCChhHHHHHHHHHHHcccc
Q psy16206 146 -LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPP--DTDDYRPLLKEIKNSSESH-ILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~--~~~d~~~~l~~lk~~~~~~-ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
...+++.+++.+ ..+....... +..+....++++.++.++. .++......+..+++++++.|+.
T Consensus 143 r~~gf~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 210 (277)
T cd06319 143 RTKGFKEAMKEAG----------CDLAGIRQQKDFSYQETFDYTNDLLTANPDIRAIWLQGSDRYQGALDAIATAGKT 210 (277)
T ss_pred HHHHHHHHHHhcC----------CceEeeccCCCCCHHHHHHHHHHHHHhCCCCCEEEECCCccchHHHHHHHHcCCC
Confidence 334444554443 3332111111 1123344555665554543 33334455567899999999986
No 123
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=97.77 E-value=0.00014 Score=76.62 Aligned_cols=190 Identities=13% Similarity=0.133 Sum_probs=109.3
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccc---cchhhhccee--------ecccc
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLT---ITSERRAAVD--------FTMPF 511 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~---~t~~R~~~~~--------fS~p~ 511 (821)
.+.+.+++++|++++++... +|..++.++.+|++|+++.+.. ...+|.+... ++.||
T Consensus 48 ~l~~~l~~~~g~~v~~~~~~------------~~~~~~~al~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 115 (288)
T TIGR03431 48 PLADYLSKKLGVKVKLFFAT------------DYAGVIEGMRFGKVDIAWYGPSSYAEAYQKANAEAFAIEVNADGSTGY 115 (288)
T ss_pred HHHHHHHHHhCCcEEEEeCC------------CHHHHHHHHHcCCccEEEEChHHHHHHHHhcCCeEEEEeccCCCCCce
Confidence 47889999999999987543 7999999999999999975421 1225555433 45555
Q ss_pred eeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHH-HhhhhcCCCcceeEeecCCChHHHHHHHHhhhcc
Q psy16206 512 MTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLL-FFLARISSGSRLRYSAKNSNVSLYQRMHSAMESS 590 (821)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (821)
. .+++++++++ ..++ +.+++.+..+ .-..+..+..... .+.+.. ...... . .
T Consensus 116 ~---~~lvv~~ds~-i~sl-~DL~Gk~v~~--~~~~s~~~~~~~~~~l~~~~-----------g~~~~~---~---~--- 168 (288)
T TIGR03431 116 Y---SVLIVKKDSP-IKSL-EDLKGKTFGF--VDPNSTSGFLVPSYYLFKKN-----------GIKPKE---Y---F--- 168 (288)
T ss_pred E---EEEEEeCCCC-CCcH-HHhCCCEEEe--eCCCcchhhHHHHHHHHHhc-----------CCChHH---h---H---
Confidence 4 5777777654 2232 3333322111 0000000000000 000000 000000 0 0
Q ss_pred CCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc-----CCceeecceecCCCcccccCC---chhhccccccee
Q psy16206 591 RPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN-----CDLMQVGGLLDSKGYGIAMPT---SKFLAKFSFGFA 662 (821)
Q Consensus 591 ~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~k---~~l~~~in~al~ 662 (821)
....+..+..+++..|.. |++|+.+.+...+..+.+.. .+++............+++++ +++.+.++++|.
T Consensus 169 ~~v~~~~~~~~~~~al~~-G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 247 (288)
T TIGR03431 169 KKVTFSGSHEAAILAVAN-GTVDAATTNDENLDRMIRKGQPDAMEDLRIIWKSPLIPNGPIVYRKDLPADLKAKIRKAFL 247 (288)
T ss_pred HhheecCchHHHHHHHHc-CCCCeEeccHHHHHHHHHcCCCCchhheEEEEEcCCCCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 011122357788999998 99999999888887777642 124444332222345688888 579999999999
Q ss_pred EEEEeecCCccc
Q psy16206 663 KLRVLFQGEPYM 674 (821)
Q Consensus 663 ~l~~~~~g~~~~ 674 (821)
++.+ +++...
T Consensus 248 ~~~~--~~~~~~ 257 (288)
T TIGR03431 248 NYHK--TDKACF 257 (288)
T ss_pred hcCC--CcHHHH
Confidence 9999 655543
No 124
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.76 E-value=0.0033 Score=65.60 Aligned_cols=196 Identities=10% Similarity=-0.018 Sum_probs=117.8
Q ss_pred cEEEEeCCC-c----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc-c
Q psy16206 2 KIVGIFGPN-E----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI-E 75 (821)
Q Consensus 2 ~IG~i~~~~-~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s-~ 75 (821)
|||++.+.. . .....+++.|.++. |+.+ .+..++..++....+....|+.++++++|..... .
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~---------g~~v--~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 69 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDL---------GVDV--EYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPD 69 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHh---------CCEE--EEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChH
Confidence 799999876 4 45566666666652 2234 4444332378777788888888899988864333 2
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-CCCCEEEEEEecCC---chhHHHH
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-MDWDTFTIIYETHD---NLVYLQQ 151 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~~w~~v~ii~~~~~---~~~~~~~ 151 (821)
........+...++|+|.....+.. ....+.+..+..++...+..+++.+.+ .|-++++++..+.+ ...+.+.
T Consensus 70 ~~~~~l~~~~~~~ipvV~~~~~~~~---~~~~~~~~~V~~d~~~~g~~~~~~l~~~~g~~~i~~i~g~~~~~~~~~r~~g 146 (271)
T cd06312 70 ALDPAIKRAVAAGIPVISFNAGDPK---YKELGALAYVGQDEYAAGEAAGERLAELKGGKNVLCVIHEPGNVTLEDRCAG 146 (271)
T ss_pred HhHHHHHHHHHCCCeEEEeCCCCCc---cccccceEEeccChHHHHHHHHHHHHHhcCCCeEEEEecCCCCccHHHHHHH
Confidence 2233334456789999998543321 111234566778888899999999988 89999998875322 2344455
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.+... .++..+.......+..+....++++.+.. ++.|+ ......+..+++.+++.|+.
T Consensus 147 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~-~~~d~~a~g~~~al~~~g~~ 208 (271)
T cd06312 147 FADGLG-------GAGITEEVIETGADPTEVASRIAAYLRANPDVDAVL-TLGAPSAAPAAKALKQAGLK 208 (271)
T ss_pred HHHHHH-------hcCceeeEeecCCCHHHHHHHHHHHHHhCCCccEEE-EeCCccchHHHHHHHhcCCC
Confidence 544443 33333221111111223344555554443 45444 34455567788888899986
No 125
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=97.76 E-value=0.0029 Score=65.35 Aligned_cols=194 Identities=13% Similarity=0.123 Sum_probs=127.8
Q ss_pred EEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcchH
Q psy16206 3 IVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIENR 77 (821)
Q Consensus 3 IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~~ 77 (821)
||++.+..+ ..+..+++-|.++.+- .+.+. .| ...|+..-.+.+.+++.+++++|| .|..+...
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~---------~~~~~-~~-~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~ 69 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGY---------EVEIV-FD-AQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSL 69 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTC---------EEEEE-EE-STTTHHHHHHHHHHHHHTTESEEEEESSSTTTT
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCC---------EEEEe-CC-CCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHH
Confidence 788999887 5577788888877543 33443 56 558898888999999999999888 77777666
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCC--CEEEEEEecCC------chhHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDW--DTFTIIYETHD------NLVYL 149 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w--~~v~ii~~~~~------~~~~~ 149 (821)
..+..-+...+||+|.+... . ....+....+.+++...+..+++++....- .+++++..... ....+
T Consensus 70 ~~~l~~~~~~gIpvv~~d~~-~----~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~ 144 (257)
T PF13407_consen 70 APFLEKAKAAGIPVVTVDSD-E----APDSPRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGF 144 (257)
T ss_dssp HHHHHHHHHTTSEEEEESST-H----HTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEecc-c----cccccceeeeeccHHHHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHH
Confidence 66667788889999998654 0 112344556777888899999998866322 57777754433 23344
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEEc--CCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQL--PPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~~--~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+.+++.+ ++.+....+ ..+.++....+.++.+..+-..|+.+....+..+++++.+.|+.+.
T Consensus 145 ~~~l~~~~---------~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~g~~~al~~~g~~~~ 209 (257)
T PF13407_consen 145 RDALKEYP---------GVEIVDEYEYTDWDPEDARQAIENLLQANPVDAIIACNDGMALGAAQALQQAGRAGK 209 (257)
T ss_dssp HHHHHHCT---------TEEEEEEEEECTTSHHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHHHHTTCTTT
T ss_pred HHHHhhcc---------eeeeeeeeeccCCCHHHHHHHHHHhhhcCCceEEEeCCChHHHHHHHHHHHcCCccc
Confidence 44554422 344433222 2223444555555555554334566777778889999999998554
No 126
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=97.69 E-value=0.0062 Score=63.51 Aligned_cols=199 Identities=6% Similarity=-0.016 Sum_probs=114.1
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcchHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIENRNII 80 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~~~~v 80 (821)
.||++.|.-.......+.-.+++.-+.. | +++.+.+.+ .+...-.+....++.+++++|| .|.........
T Consensus 1 ~~g~~~~~~~~~~~~~~~~~~~~~a~~~-----g--~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 72 (273)
T cd06309 1 TVGFSQVGAESPWRTAETKSIKDAAEKR-----G--FDLKFADAQ-QKQENQISAIRSFIAQGVDVIILAPVVETGWDPV 72 (273)
T ss_pred CeeeccCCCCCHHHHHHHHHHHHHHHhc-----C--CEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEcCCccccchHH
Confidence 4899998433222222333333333222 2 455556633 5676667778888888888886 45444332333
Q ss_pred HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---c---hhHHHHH
Q psy16206 81 ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD---N---LVYLQQV 152 (821)
Q Consensus 81 ~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~---~~~~~~~ 152 (821)
...+...++|+|........ ....+++.++.+++...+..+++.+... |-++++++..+.. . ...+.+.
T Consensus 73 i~~~~~~~iPvV~~~~~~~~---~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~ 149 (273)
T cd06309 73 LKEAKAAGIPVILVDRGVDV---KDDSLYVTFIGSDFVEEGRRAADWLAKATGGKGNIVELQGTVGSSVAIDRKKGFAEV 149 (273)
T ss_pred HHHHHHCCCCEEEEecCcCC---ccCcceeeEecCChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHH
Confidence 34567789999998643221 1123467778888888888888888776 8899999976432 1 3344444
Q ss_pred HHhcCCCCCcCCCCCCeEEEEEc-CCCCCChHHHHHHhhcCC---CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 153 LENAHDDDKEIRPGRPSVTIRQL-PPDTDDYRPLLKEIKNSS---ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~~~~-~~~~~d~~~~l~~lk~~~---~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+++.+ +..+..... .....+....++++.+.. +++| +......+..+++++.+.|+..+
T Consensus 150 l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aI-~~~~d~~a~g~~~a~~~~g~~ip 212 (273)
T cd06309 150 IKKYP---------NMKIVASQTGDFTRAKGKEVMEALLKAHGDDIDAV-YAHNDEMALGAIQAIKAAGKKPG 212 (273)
T ss_pred HHHCC---------CCEEeeccCCcccHHHHHHHHHHHHHhCCCCccEE-EECCcHHHHHHHHHHHHcCCCCC
Confidence 44332 233321111 111123344555555443 3443 44455566678899999998643
No 127
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=97.66 E-value=0.0058 Score=63.69 Aligned_cols=197 Identities=12% Similarity=0.028 Sum_probs=114.7
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
|||++.+... ..+..+++-+.++ .. | +++.+.+++ .++....+...+++..+|+++| .|..+..
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~---~~-----~--~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 69 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKV---LG-----G--VELQFEDAK-NDVATQLSQVENFIAQGVDAIIVVPVDTAA 69 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHH---cC-----C--cEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEecCchhh
Confidence 6999998654 3344444444433 12 2 556666643 6888878888888888999886 5655443
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---c---hhH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD---N---LVY 148 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~---~~~ 148 (821)
...+...+...++|+|........ . ...+..+..++...+..+++.+... +-++++++..... . ...
T Consensus 70 ~~~~~~~l~~~~iPvv~~~~~~~~---~--~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~R~~g 144 (272)
T cd06301 70 TAPIVKAANAAGIPLVYVNRRPEN---A--PKGVAYVGSDEVVAGRLQAEYVADKLGGKGNVAILMGPLGQSAQIDRTKG 144 (272)
T ss_pred hHHHHHHHHHCCCeEEEecCCCCC---C--CCeeEEEecChHHHHHHHHHHHHHHhCCCccEEEEECCCCCccHHHHHHH
Confidence 444445578899999987543221 1 1234456777777788888877665 5579999875432 2 234
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCCh---HHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcce
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDY---RPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDYQ 223 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~---~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~ 223 (821)
+++.+++.+ +..+... . ....+. ...++++.+. .++.| ++++...+..+++.+++.|+...+.
T Consensus 145 f~~~l~~~~---------~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~~~~~~l~~~g~~~~di 212 (272)
T cd06301 145 VEEVLAKYP---------DIKVVEE-Q-TANWSRAEAMDLMENWLSSGGKIDAV-VANNDEMALGAIMALKAAGKSDKDV 212 (272)
T ss_pred HHHHHHHCC---------CcEEEec-C-CCCccHHHHHHHHHHHHHhCCCCCEE-EECCCchHHHHHHHHHHcCCCCCCc
Confidence 444443332 1222211 1 111222 2344554433 34544 4455666778999999999863243
Q ss_pred EEE
Q psy16206 224 NYI 226 (821)
Q Consensus 224 ~~i 226 (821)
..+
T Consensus 213 ~iv 215 (272)
T cd06301 213 PVA 215 (272)
T ss_pred EEE
Confidence 333
No 128
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=97.64 E-value=0.0037 Score=64.86 Aligned_cols=192 Identities=9% Similarity=0.105 Sum_probs=110.7
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.|... ..+.++++.+.++ . | +.+.+.+++ .++....+...+++.+++++||...+....
T Consensus 1 ~igvv~~~~~~~~~~~~~~~i~~~~~~---~------g--~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiii~~~~~~~ 68 (266)
T cd06282 1 TVGVVLPSLANPVFAECVQGIQEEARA---A------G--YSLLLATTD-YDAEREADAVETLLRQRVDGLILTVADAAT 68 (266)
T ss_pred CeEEEeCCCCcchHHHHHHHHHHHHHH---C------C--CEEEEeeCC-CCHHHHHHHHHHHHhcCCCEEEEecCCCCc
Confidence 4889997544 3334444444433 2 2 344455533 677777788888888899999864333322
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEec---CC-chhHHHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYET---HD-NLVYLQQVL 153 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~---~~-~~~~~~~~~ 153 (821)
......+...++|+|.....+. ...++ ...++...++.+++.+...|.++++++..+ .+ ...+.+.+.
T Consensus 69 ~~~~~~~~~~~ipvV~~~~~~~-----~~~~~---v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~ 140 (266)
T cd06282 69 SPALDLLDAERVPYVLAYNDPQ-----PGRPS---VSVDNRAAARDVAQALAALGHRRIAMLAGRLAASDRARQRYAGYR 140 (266)
T ss_pred hHHHHHHhhCCCCEEEEeccCC-----CCCCE---EeeCcHHHHHHHHHHHHHcCcccEEEeccccccCchHHHHHHHHH
Confidence 3355667888999998854322 11232 345666788888998888899999999743 22 222333333
Q ss_pred HhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 154 ENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+... .++..+. ....+....+....+.++.+. .+++|+. ++...+..+++++++.|+..+
T Consensus 141 ~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~~p 203 (266)
T cd06282 141 AAMR-------AAGLAPLPPVEIPFNTAALPSALLALLTAHPAPTAIFC-SNDLLALAVIRALRRLGLRVP 203 (266)
T ss_pred HHHH-------HcCCCCCccccCCCcHHHHHHHHHHHhcCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCC
Confidence 3332 2223221 111222222233445544333 3565554 556667789999999998533
No 129
>KOG4440|consensus
Probab=97.57 E-value=2.9e-05 Score=83.32 Aligned_cols=91 Identities=24% Similarity=0.391 Sum_probs=83.5
Q ss_pred HHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeecceecCCCcccccCC-chhhcccccce
Q psy16206 583 MHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGGLLDSKGYGIAMPT-SKFLAKFSFGF 661 (821)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k-~~l~~~in~al 661 (821)
|++.|+.+ -+.+.+|+++.|++ |+.+|||.|+..+++...++|.+...++.|...+|++++.| ++|.+.+..+|
T Consensus 713 MyR~ME~h----Ny~~A~eAiq~v~~-gkL~AFIWDS~rLEfEAs~~CeLvT~GeLFgRSgyGIGlqK~SPWt~~vtlaI 787 (993)
T KOG4440|consen 713 MYRHMEKH----NYESAAEAIQAVRD-GKLHAFIWDSARLEFEASQKCELVTTGELFGRSGYGIGLQKDSPWTQNVTLAI 787 (993)
T ss_pred HHHhhhhc----chhhHHHHHHHHHc-CceeEEEeecceeeehhhcccceEeccccccccccccccccCCCCcchhhHHH
Confidence 44445442 36688999999999 99999999999999999999999999999999999999999 99999999999
Q ss_pred eEEEEeecCCccccccCCC
Q psy16206 662 AKLRVLFQGEPYMMKNPET 680 (821)
Q Consensus 662 ~~l~~~~~g~~~~i~~k~~ 680 (821)
.++.+ +|.+++|-++|.
T Consensus 788 L~~hE--sGfMEkLDk~Wi 804 (993)
T KOG4440|consen 788 LKSHE--SGFMEKLDKTWI 804 (993)
T ss_pred HHhhh--cchHHHHHHHHH
Confidence 99999 999999999996
No 130
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.52 E-value=0.0088 Score=62.36 Aligned_cols=193 Identities=15% Similarity=0.046 Sum_probs=110.7
Q ss_pred cEEEEeCCC-c----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcc
Q psy16206 2 KIVGIFGPN-E----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~-~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~ 75 (821)
.||++.|.. . ..+..+++.+.++ . | +++.+.+ ...++....+....++.++|++|| .|..+.
T Consensus 1 ~i~vi~p~~~~~~~~~~~~~g~~~~~~~---~------g--~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 68 (275)
T cd06317 1 TIGYTQNNVGSHSYQTTYNKAFQAAAEE---D------G--VEVIVLD-ANGDVARQAAQVEDLIAQKVDGIILWPTDGQ 68 (275)
T ss_pred CeEEEecccCCCHHHHHHHHHHHHHHHh---c------C--CEEEEEc-CCcCHHHHHHHHHHHHHcCCCEEEEecCCcc
Confidence 488999875 3 4555666666665 2 2 4455566 336888878888888888999885 444443
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEE-ecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---c---h
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNV-YPESHLISKGISVIINDM--DWDTFTIIYETHD---N---L 146 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~-~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~---~ 146 (821)
........+...++|+|....... ....++.... .+++...++.+++.+..+ |-++++++....+ . .
T Consensus 69 ~~~~~l~~~~~~~iPvV~~~~~~~----~~~~~~v~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~ 144 (275)
T cd06317 69 AYIPGLRKAKQAGIPVVITNSNIS----EKGFEFIKSFTGPDDISQGERSAEAMCKALGGKGQIVVIAGQPGNGTAIERQ 144 (275)
T ss_pred ccHHHHHHHHHCCCcEEEeCCCCC----CCccchhhhhccccHHHHHHHHHHHHHHHcCCCceEEEEecCCCCchHHHHH
Confidence 333344556788999998754322 1123333332 345555667777766554 7789999975332 2 3
Q ss_pred hHHHHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcC---CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 147 VYLQQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNS---SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~---~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
..+++.+++.+ . +..+....... ...+....++++.+. .++.|+ .+....+..+++++++.|+.
T Consensus 145 ~g~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~ 212 (275)
T cd06317 145 KGFEDELAEVC-------P-GVEVLDTQPADWDREKAQVAMEALITKFGDDIDGVY-AGDDNMARGALNAAKEAGLA 212 (275)
T ss_pred HHHHHHHHhhC-------C-CCEEEeccCCCCCHHHHHHHHHHHHHhCCCCccEEE-ECCCcHHHHHHHHHHhcCCc
Confidence 44455555543 1 22222111111 112222334444333 345665 44455677899999999986
No 131
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=97.51 E-value=0.0095 Score=61.79 Aligned_cols=189 Identities=10% Similarity=0.025 Sum_probs=108.5
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEE-EEcCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAA-IFGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~a-iiGp~~s~~ 76 (821)
.||++.|... ..+.++++.+.++ . | +.+.+.+++ .++....+...+++.+++++ |++|..+..
T Consensus 1 ~I~vv~~~~~~~~~~~~~~~i~~~~~~---~------g--~~v~~~~~~-~~~~~~~~~~~~~~~~~~dgii~~~~~~~~ 68 (268)
T cd06323 1 TIGLSVSTLNNPFFVTLKDGAQKEAKE---L------G--YELTVLDAQ-NDAAKQLNDIEDLITRGVDAIIINPTDSDA 68 (268)
T ss_pred CeeEecccccCHHHHHHHHHHHHHHHH---c------C--ceEEecCCC-CCHHHHHHHHHHHHHcCCCEEEEcCCChHH
Confidence 3788887533 4455666666555 2 2 334455533 67877778888888888888 456655443
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---c---hhH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD---N---LVY 148 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~---~~~ 148 (821)
.......+...++|+|....... ....+-.+..++...+..+++.+... |-+++++++.+.. . ...
T Consensus 69 ~~~~l~~l~~~~ipvv~~~~~~~------~~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g 142 (268)
T cd06323 69 VVPAVKAANEAGIPVFTIDREAN------GGEVVSQIASDNVAGGKMAAEYLVKLLGGKGKVVELQGIPGASAARERGKG 142 (268)
T ss_pred HHHHHHHHHHCCCcEEEEccCCC------CCceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHH
Confidence 33344445678999999854322 11223335555555678788888776 7899999976432 2 233
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCC--cEEEEeCChhHHHHHHHHHHHccc
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSE--SHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~--~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
+++.+++. .+..+.. .....+..+....+.++.+..+ ++ ++......+..+++++.+.|+
T Consensus 143 ~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~~~~~~l~~~g~ 205 (268)
T cd06323 143 FHEVVDKY---------PGLKVVASQPADFDRAKGLNVMENILQAHPDIKG-VFAQNDEMALGAIEALKAAGK 205 (268)
T ss_pred HHHHHHhC---------CCcEEEecccCCCCHHHHHHHHHHHHHHCCCcCE-EEEcCCchHHHHHHHHHHcCC
Confidence 33444332 1344332 1111212233344555544433 44 334445556668899999988
No 132
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=97.49 E-value=0.013 Score=60.78 Aligned_cols=189 Identities=13% Similarity=0.090 Sum_probs=109.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.|... .....+++-++++ . |+.+ .+.+ ...++....+....+++++|+++|--.+...
T Consensus 1 ~i~vv~p~~~~~~~~~~~~~i~~~~~~---~------g~~~--~~~~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~- 67 (268)
T cd06273 1 TIGAIVPTLDNAIFARVIQAFQETLAA---H------GYTL--LVAS-SGYDLDREYAQARKLLERGVDGLALIGLDHS- 67 (268)
T ss_pred CeEEEeCCCCCchHHHHHHHHHHHHHH---C------CCEE--EEec-CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-
Confidence 4899998644 3344445444443 2 2233 4456 3367877777888888888877663211112
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecC---C-c---hhHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETH---D-N---LVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~---~-~---~~~~~ 150 (821)
......+...++|+|....... ....+ ....++...+..+++.+...|.++++++.... . . ...+.
T Consensus 68 ~~~~~~l~~~~iPvv~~~~~~~----~~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~ 140 (268)
T cd06273 68 PALLDLLARRGVPYVATWNYSP----DSPYP---CVGFDNREAGRLAARHLIALGHRRIAMIFGPTQGNDRARARRAGVR 140 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCC----CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeccccCCccHHHHHHHHH
Confidence 2333456778999998853322 11222 34567777888888988888999999997432 1 2 23334
Q ss_pred HHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ ..+. ....+.+.++....+.++.+. .+++|+. +....+..+++++.+.|+..+
T Consensus 141 ~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~~~~a~~~~~~l~~~g~~~p 205 (268)
T cd06273 141 AALAEAG----------LELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVIC-GNDVLALGALYEARRLGLSVP 205 (268)
T ss_pred HHHHHcC----------CCCCHHHeeeCCCcHHHHHHHHHHHHcCCCCCCEEEE-cChHHHHHHHHHHHHcCCCCC
Confidence 4444332 2221 111111122334556666543 4666664 556667789999999998644
No 133
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.46 E-value=0.022 Score=59.13 Aligned_cols=189 Identities=11% Similarity=0.014 Sum_probs=106.9
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
.||++.|... ..+..+++.+.++ . | +++.+.+++ .++....+...+++.++++++|- |..+..
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~i~~~~~~---~------g--~~~~i~~~~-~~~~~~~~~~~~~~~~~vdgiii~~~~~~~ 68 (267)
T cd06322 1 VIGASLLTQQHPFYIELANAMKEEAKK---Q------K--VNLIVSIAN-QDLNKQLSDVEDFITKKVDAIVLSPVDSKG 68 (267)
T ss_pred CeeEeecCcccHHHHHHHHHHHHHHHh---c------C--CEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEcCCChhh
Confidence 4899998765 3344444444432 2 2 344555633 67777777788888889998875 443332
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC--c---hhHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD--N---LVYL 149 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~--~---~~~~ 149 (821)
.......+...++|+|.+..... .........+++...+..+++++... |-+++++++..+. . ...+
T Consensus 69 ~~~~~~~~~~~~ipvV~~~~~~~------~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf 142 (267)
T cd06322 69 IRAAIAKAKKAGIPVITVDIAAE------GVAVVSHVATDNYAGGVLAGELAAKVLNGKGQVAIIDYPTVQSVVDRVRGF 142 (267)
T ss_pred hHHHHHHHHHCCCCEEEEcccCC------CCceEEEEecChHHHHHHHHHHHHHHhCCCceEEEEecCCCccHHHHHHHH
Confidence 22333446678999999853211 11223346677667777788877764 8889999975432 1 2333
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
++.+++.. |..+.........++....++++... .+++|+ .++...+..+++++.+.|+
T Consensus 143 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~~~~~al~~~g~ 203 (267)
T cd06322 143 KEALADYP---------NIKIVAVQPGITRAEALTAAQNILQANPDLDGIF-AFGDDAALGAVSAIKAAGR 203 (267)
T ss_pred HHHHHhCC---------CcEEEEecCCCChHHHHHHHHHHHHhCCCCCEEE-EcCCcHHHHHHHHHHHCCC
Confidence 44444331 34432211111112223334454433 345444 4555566778899999998
No 134
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=97.44 E-value=0.019 Score=59.64 Aligned_cols=190 Identities=11% Similarity=0.031 Sum_probs=109.0
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHh-hcCeEEEEcCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNAT-SEGIAAIFGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li-~~~V~aiiGp~~s~~ 76 (821)
.||++.|... ..+..+++.+.++ . |+.+.+...| + .++ ...+.+.+++ ..++++||...+...
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~---~------g~~~~~~~~~-~-~~~-~~~~~~~~~l~~~~vdgiii~~~~~~ 68 (270)
T cd01545 1 LIGLLYDNPSPGYVSEIQLGALDACRD---T------GYQLVIEPCD-S-GSP-DLAERVRALLQRSRVDGVILTPPLSD 68 (270)
T ss_pred CEEEEEcCCCcccHHHHHHHHHHHHHh---C------CCeEEEEeCC-C-Cch-HHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 3899998644 5566677766653 2 3455544443 1 233 2445566655 559999987544332
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc------hhHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN------LVYLQ 150 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~------~~~~~ 150 (821)
.......+...++|+|........ ...+ .+..++...++.+++.+...|.++++++..+... ...+.
T Consensus 69 ~~~~~~~~~~~~ipvv~i~~~~~~----~~~~---~V~~d~~~~g~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~ 141 (270)
T cd01545 69 NPELLDLLDEAGVPYVRIAPGTPD----PDSP---CVRIDDRAAAREMTRHLIDLGHRRIAFIAGPPDHRASAERLEGYR 141 (270)
T ss_pred ccHHHHHHHhcCCCEEEEecCCCC----CCCC---eEEeccHHHHHHHHHHHHHCCCceEEEEeCCCCchhHHHHHHHHH
Confidence 334445667789999988543221 1122 2445666777888888888899999999754431 23344
Q ss_pred HHHHhcCCCCCcCCCCCCeE---EEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSV---TIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v---~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ ..+ ..........+-...++++.+. .+++|+ .+....+..+++++++.|+..+
T Consensus 142 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~-~~~d~~a~~~~~~~~~~g~~~p 206 (270)
T cd01545 142 DALAEAG----------LPLDPELVAQGDFTFESGLEAAEALLALPDRPTAIF-ASNDDMAAGVLAVAHRRGLRVP 206 (270)
T ss_pred HHHHHcC----------CCCChhhEEeCCCChhhHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCC
Confidence 4444433 222 1111111112222344555433 456665 4556777889999999998543
No 135
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.44 E-value=0.025 Score=58.87 Aligned_cols=200 Identities=12% Similarity=-0.002 Sum_probs=108.9
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcch-
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIEN- 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~- 76 (821)
|||++.+.-. ..+..+++.+.++ . |+++.+...+ ...++....+...+++.+++++||-..+...
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~---~------g~~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~ 70 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKE---L------GVKVTFQGPA-SETDVAGQVNLLENAIARGPDAILLAPTDAKA 70 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHH---c------CCEEEEecCc-cCCCHHHHHHHHHHHHHhCCCEEEEcCCChhh
Confidence 7999998644 3333344433332 2 3344444322 1357777777888888888888885333322
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---c---hhH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD---N---LVY 148 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~---~~~ 148 (821)
.......+...++|+|....... . ..+ +-.+.+++...+..+++++... |.++++++....+ . ...
T Consensus 71 ~~~~l~~~~~~~ipvV~~~~~~~----~-~~~-~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~g 144 (273)
T cd06310 71 LVPPLKEAKDAGIPVVLIDSGLN----S-DIA-VSFVATDNVAAGKLAAEALAELLGKKGKVAVISFVPGSSTTDQREEG 144 (273)
T ss_pred hHHHHHHHHHCCCCEEEecCCCC----C-Ccc-eEEEeeChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCccHHHHHHH
Confidence 12233444568999999853222 1 111 2224555556677788877776 8999999964332 1 233
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcCCCcE-EEEeCChhHHHHHHHHHHHccccCcceEEE
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNSSESH-ILLDCSMDKTVTILKQAKEVHLMGDYQNYI 226 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~~~~~-ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i 226 (821)
+++.+++.. +..+....... +..+-...+.++....++. .|++.+...+..+++.+++.|+. ++...+
T Consensus 145 f~~a~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~~l~~~g~~-~di~vi 214 (273)
T cd06310 145 FLEGLKEYP---------GIEIVATQYSDSDYAKALDITEDLLTANPDLKGIFGANEGSAVGAARAVRQAGKA-GKVKVV 214 (273)
T ss_pred HHHHHHhCC---------CcEEEecccCCcCHHHHHHHHHHHHHhCCCceEEEecCchhHHHHHHHHHhcCCC-CCeEEE
Confidence 344444331 33332211111 1122334555554444333 34444566677899999999985 444434
Q ss_pred E
Q psy16206 227 L 227 (821)
Q Consensus 227 ~ 227 (821)
.
T Consensus 215 g 215 (273)
T cd06310 215 G 215 (273)
T ss_pred E
Confidence 3
No 136
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=97.41 E-value=0.025 Score=58.56 Aligned_cols=189 Identities=12% Similarity=-0.004 Sum_probs=104.8
Q ss_pred EEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 3 IVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 3 IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
||++.|... .....+++-|.++ . | +++.+.|.+ .++....+....++.++|++||...+.....
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~----~-----g--~~~~~~~~~-~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 69 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEARE----A-----G--YGVLLGDTR-SDPEREQEYLDLLRRKQADGIILLDGSLPPT 69 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHH----c-----C--CeEEEecCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCHH
Confidence 788888755 3344444444443 2 2 344556633 6776666666667777999888633322222
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHHH
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQV 152 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~~ 152 (821)
+.... ..++|+|....... . +....+..++...++.+++.+...|.++++++..+.. . ...+.+.
T Consensus 70 -~~~~~-~~~ipvv~~~~~~~----~---~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~ 140 (267)
T cd06284 70 -ALTAL-AKLPPIVQACEYIP----G---LAVPSVSIDNVAAARLAVDHLISLGHRRIALITGPRDNPLARDRLEGYRQA 140 (267)
T ss_pred -HHHHH-hcCCCEEEEecccC----C---CCcceEEecccHHHHHHHHHHHHcCCceEEEEcCCccchhHHHHHHHHHHH
Confidence 22233 34899998742211 1 2233456667777888888888889999999976432 2 3344444
Q ss_pred HHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 153 LENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
+++.+ ..........-..+..+....++++.+. .+++|+. ++...+..+++++++.|+..
T Consensus 141 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~~~~a~g~~~al~~~g~~~ 202 (267)
T cd06284 141 LAEAG-------LPADEELIQEGDFSLESGYAAARRLLALPDRPTAIFC-FSDEMAIGAISALKELGLRV 202 (267)
T ss_pred HHHcC-------CCCCcceEEeCCCChHHHHHHHHHHHhCCCCCcEEEE-cCcHHHHHHHHHHHHcCCCC
Confidence 44432 1111111111111122233445555433 3566555 45555778899999999753
No 137
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=97.31 E-value=0.042 Score=57.11 Aligned_cols=200 Identities=10% Similarity=-0.001 Sum_probs=109.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
+||++.|.-. ..+..+++-+. .+.+ |+++ .+.++ ..++..-.+...+++.+++++|| .|.....
T Consensus 1 ~ig~~~~~~~~~~~~~~~~~i~~~~---~~~~-----g~~~--~~~~~-~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~ 69 (270)
T cd06308 1 VIGFSQCNLADPWRAAMNDEIQREA---SNYP-----DVEL--IIADA-ADDNSKQVADIENFIRQGVDLLIISPNEAAP 69 (270)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHH---HhcC-----CcEE--EEEcC-CCCHHHHHHHHHHHHHhCCCEEEEecCchhh
Confidence 6899997533 22333333322 2221 3344 45553 36777667777778887888776 3433222
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---chhHHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD---NLVYLQQ 151 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~~~~~~~ 151 (821)
.......+...++|++....... . ..+...+..++...+..+++.+... |-++++++..... ...+.+.
T Consensus 70 ~~~~~~~~~~~~ipvV~~~~~~~----~--~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~g 143 (270)
T cd06308 70 LTPVVEEAYRAGIPVILLDRKIL----S--DKYTAYIGADNYEIGRQAGEYIANLLPGKGNILEIWGLEGSSPAIERHDG 143 (270)
T ss_pred chHHHHHHHHCCCCEEEeCCCCC----C--ccceEEeecCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCchHHHHHHH
Confidence 12222334568999998853221 1 1233446677777888888888774 8899999975332 2223333
Q ss_pred HHHhcCCCCCcCCCC-CCeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcceEEEE
Q psy16206 152 VLENAHDDDKEIRPG-RPSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~-g~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
+.+... .+ ++.+....... ...+....++++.+. ++++| +..+...+..+++++++.|+. .+..-+.
T Consensus 144 ~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI-~~~~d~~a~g~~~al~~~g~~-~dv~vvg 214 (270)
T cd06308 144 FKEALS-------KYPKIKIVAQQDGDWLKEKAEEKMEELLQANPDIDLV-YAHNDPMALGAYLAAKRAGRE-KEIKFIG 214 (270)
T ss_pred HHHHHH-------HCCCCEEEEecCCCccHHHHHHHHHHHHHhCCCCcEE-EeCCcHHHHHHHHHHHHcCCC-CCcEEEE
Confidence 333333 22 44433221111 112223445555433 35654 445566677899999999987 4433333
No 138
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=97.30 E-value=0.047 Score=55.95 Aligned_cols=198 Identities=10% Similarity=0.041 Sum_probs=123.2
Q ss_pred CcEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 1 MKIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 1 i~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
++||+....+. .....+++-|..+ .|- . .+++.+.. ..+|+..+.+.++++..++.++|++-.++. +
T Consensus 31 ~~VaI~~~veHpaLd~~~~G~~~aLk~---~G~---~--n~~i~~~n-a~~~~~~a~~iarql~~~~~dviv~i~tp~-A 100 (322)
T COG2984 31 ITVAITQFVEHPALDAAREGVKEALKD---AGY---K--NVKIDYQN-AQGDLGTAAQIARQLVGDKPDVIVAIATPA-A 100 (322)
T ss_pred eeEEEEEeecchhHHHHHHHHHHHHHh---cCc---c--CeEEEeec-CCCChHHHHHHHHHhhcCCCcEEEecCCHH-H
Confidence 35777777777 3444555555544 322 1 46777776 448999999999999999777777655443 3
Q ss_pred HHHHHHhccCCCceeeeccCCCC---CCCCCCCccEEEEecChhhHHHHHHHHHHh--CCCCEEEEEEecCC--chhHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNK---YFIPTNGVHGVNVYPESHLISKGISVIIND--MDWDTFTIIYETHD--NLVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~---~~~~~~~~~~~r~~p~~~~~~~al~~~~~~--~~w~~v~ii~~~~~--~~~~~~ 150 (821)
.++.+ .-.++|+|-.+.+... +...-..|----+.-+|..-...-.++++. -+-|+++++|..++ ....++
T Consensus 101 q~~~s--~~~~iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~e 178 (322)
T COG2984 101 QALVS--ATKTIPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVE 178 (322)
T ss_pred HHHHH--hcCCCCEEEEccCchhhccCCccccCCCCceeecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHH
Confidence 33333 2233999987655222 111101111122444444434444455555 47899999998776 445555
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh---hHHHHHHHHHHHcccc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM---DKTVTILKQAKEVHLM 219 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~---~~~~~~l~~a~~~g~~ 219 (821)
++...+. ..|+.|.....+. ..|....++.|. .++|+|++.++. .....+++.|.+.+.+
T Consensus 179 elk~~A~-------~~Gl~vve~~v~~-~ndi~~a~~~l~-g~~d~i~~p~dn~i~s~~~~l~~~a~~~kiP 241 (322)
T COG2984 179 ELKKEAR-------KAGLEVVEAAVTS-VNDIPRAVQALL-GKVDVIYIPTDNLIVSAIESLLQVANKAKIP 241 (322)
T ss_pred HHHHHHH-------HCCCEEEEEecCc-ccccHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHHHHHhCCC
Confidence 5555565 6688887666655 566777777776 688999988876 4456677777776653
No 139
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.29 E-value=0.035 Score=57.52 Aligned_cols=193 Identities=12% Similarity=0.057 Sum_probs=110.5
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.+... .....+++-+.++. |+++ .+.+ ...++..-.+...+++.++++++|...+....
T Consensus 1 ~I~vi~~~~~~~~~~~~~~g~~~~a~~~---------g~~~--~~~~-~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~ 68 (268)
T cd06289 1 TIGLVINDLTNPFFAELAAGLEEVLEEA---------GYTV--FLAN-SGEDVERQEQLLSTMLEHGVAGIILCPAAGTS 68 (268)
T ss_pred CEEEEecCCCcchHHHHHHHHHHHHHHc---------CCeE--EEec-CCCChHHHHHHHHHHHHcCCCEEEEeCCCCcc
Confidence 4889998544 44556666665542 2333 3444 32566666667777888899998875544333
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~ 151 (821)
..+...+...++|+|........ .. ...+.+++...+..+++.+...|-++++++..+.. . ...+.+
T Consensus 69 ~~~~~~~~~~~ipvV~~~~~~~~----~~---~~~v~~d~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~ 141 (268)
T cd06289 69 PDLLKRLAESGIPVVLVAREVAG----AP---FDYVGPDNAAGARLATEHLISLGHRRIAFIGGLEDSSTRRERLAGYRA 141 (268)
T ss_pred HHHHHHHHhcCCCEEEEeccCCC----CC---CCEEeecchHHHHHHHHHHHHCCCCCEEEecCCccccchHHHHHHHHH
Confidence 33445567789999988432221 11 22355666677888888888889999998875432 1 344444
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+ ..-........+.+.......++++.+. .+++|+ ..+...+..+++++.+.|+..+
T Consensus 142 ~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~-~~~~~~a~~~~~al~~~g~~~p 205 (268)
T cd06289 142 ALAEAG-------LPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAIV-CFNDLVAFGAMSGLRRAGLTPG 205 (268)
T ss_pred HHHHcC-------CCCCchhEEecCcchhhHHHHHHHHHcCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCC
Confidence 544433 1000111111111122334555555544 345554 4445556678999999988643
No 140
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.27 E-value=0.033 Score=58.11 Aligned_cols=195 Identities=10% Similarity=0.013 Sum_probs=108.6
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
.||++.+... ..+..+++-+.++....+. + +++.+.+.. .++....+....++.+++++|| .|.....
T Consensus 1 ~Ig~i~~~~~~~f~~~~~~gi~~~a~~~~~~~~----g--~~~~~~~~~-~~~~~~~~~~~~l~~~~vDgiii~~~~~~~ 73 (274)
T cd06311 1 TIGVSIPAADHGWTAGIVWHAQAAAKKLEAAYP----D--VEFILVTAS-NDTEQQNAQQDLLINRKIDALVILPFESAP 73 (274)
T ss_pred CeeeeccCCCCcHHHHHHHHHHHHHHHhhhhCC----C--eEEEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchh
Confidence 4788887533 4556667766666554421 3 556666633 5565555556667777888776 4443332
Q ss_pred -HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC--chhHHHH
Q psy16206 77 -RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD--NLVYLQQ 151 (821)
Q Consensus 77 -~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~--~~~~~~~ 151 (821)
...+. .+...+||+|........ .. .....+.+++...+...++++... |.++++++..... ...+.+.
T Consensus 74 ~~~~i~-~~~~~gIpvV~~d~~~~~---~~--~~~~~V~~d~~~~g~~aa~~l~~~~~g~~~i~~~~g~~~~~~~~R~~g 147 (274)
T cd06311 74 LTQPVA-KAKKAGIFVVVVDRGLSS---PG--AQDLYVAGDNYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDNERVDA 147 (274)
T ss_pred hHHHHH-HHHHCCCeEEEEcCCCCC---Cc--ccceEEcCCcHHHHHHHHHHHHHHhCCCCeEEEEECCCCcchhHHHHH
Confidence 23343 456789999998543221 11 112335666667778888877765 8899999975432 1222333
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCCh---HHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDDY---RPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~---~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.+... .+++.+... ... ..+. ...++++.+.. +++|+. .....+..+++++++.|+.
T Consensus 148 f~~~l~-------~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~ 210 (274)
T cd06311 148 FDAAIA-------KYPIKILDR-QYA-NWNRDDAFSVMQDLLTKFPKIDAVWA-HDDDMAVGVLAAIKQAGRT 210 (274)
T ss_pred HHHHHh-------hCCcEEEec-cCC-CCcHHHHHHHHHHHHHhCCCcCEEEE-CCCcHHHHHHHHHHHcCCC
Confidence 333333 334333221 211 1222 34445544333 455443 3445567788888888875
No 141
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=97.26 E-value=0.027 Score=58.58 Aligned_cols=190 Identities=9% Similarity=-0.076 Sum_probs=111.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcC-CCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGP-QSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp-~~s~~ 76 (821)
+||++.+... ..+..+++-+.++. | +++.+.+ ...++....+....++.+++++||.. ..+..
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~---------g--~~~~~~~-~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~ 68 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEAL---------G--GDLRVYD-AGGDDAKQADQIDQAIAQKVDAIIIQHGRAEV 68 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHc---------C--CEEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEEecCChhh
Confidence 5899988433 44455555554442 2 2344456 34788777788888888899999874 33333
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh--CCCCEEEEEEecCC--c---hhHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND--MDWDTFTIIYETHD--N---LVYL 149 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~--~~w~~v~ii~~~~~--~---~~~~ 149 (821)
...+...+...++|+|....... . +.+..+.+++...++.+++.+.. .|.++++++...+. . ...+
T Consensus 69 ~~~~i~~~~~~~ipvV~~~~~~~----~---~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~g~ 141 (273)
T cd06305 69 LKPWVKRALDAGIPVVAFDVDSD----N---PKVNNTTQDDYSLARLSLDQLVKDLGGKGNVGYVNVAGFPPLDRRYDVW 141 (273)
T ss_pred hHHHHHHHHHcCCCEEEecCCCC----C---CccceeeechHHHHHHHHHHHHHHhCCCCCEEEEEccCCchHHHHHHHH
Confidence 33444456778999998854322 1 22334667777788888888776 58899999975422 1 2234
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEE-c--CCCCCChHHHHHHhhcCCCcE---EEEeCChhHHHHHHHHHHHcccc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQ-L--PPDTDDYRPLLKEIKNSSESH---ILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~-~--~~~~~d~~~~l~~lk~~~~~~---ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
++++++.+ +..+.... . ..+..+....++++....++. .++......+..+++++++.|+.
T Consensus 142 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 208 (273)
T cd06305 142 QAVLKAYP---------GIKEVAELGDVSNNTAQDAAAQVEAVLKKYPKGGIDAIWAAWDEFAKGAKQALDEAGRT 208 (273)
T ss_pred HHHHHHCC---------CcEEecccccccccchhHHHHHHHHHHHHCCCcccCeEEEcChhhhHHHHHHHHHcCCC
Confidence 44444332 23332211 1 111233445566665444433 23334455677788899999985
No 142
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=97.20 E-value=0.05 Score=56.36 Aligned_cols=192 Identities=13% Similarity=0.069 Sum_probs=106.6
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.|... .....+++-+.+. . |+. +.+.+.+ .++..-.+...+++.++|++||--......
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~----~-----g~~--~~~~~~~-~~~~~~~~~~~~l~~~~vdgiii~~~~~~~ 68 (268)
T cd01575 1 LVAVLVPSLSNSVFADVLQGISDVLEA----A-----GYQ--LLLGNTG-YSPEREEELLRTLLSRRPAGLILTGLEHTE 68 (268)
T ss_pred CEEEEeCCCcchhHHHHHHHHHHHHHH----c-----CCE--EEEecCC-CCchhHHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 3889998644 3333444444433 1 333 3445433 456666667777887788888743222222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~ 151 (821)
. ....+...++|+|....... . +.......+....+..+++.+...|.++++++..+.. . ...+++
T Consensus 69 ~-~~~~~~~~~ipvv~~~~~~~----~---~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~ 140 (268)
T cd01575 69 R-TRQLLRAAGIPVVEIMDLPP----D---PIDMAVGFSHAEAGRAMARHLLARGYRRIGFLGARMDDTRAQQRLEGFRA 140 (268)
T ss_pred H-HHHHHHhcCCCEEEEecCCC----C---CCCCeEEeCcHHHHHHHHHHHHHCCCCcEEEecCCCCcccHHHHHHHHHH
Confidence 2 33445667999998743211 1 1122355666777888888888889999999987643 1 334444
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+ .............+.......++++.+. .+++|+. ++...+..+++.+.+.|..-+
T Consensus 141 ~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~~~~~~l~~~g~~~p 204 (268)
T cd01575 141 ALRAAG-------LDPPLVVTTPEPSSFALGRELLAELLARWPDLDAVFC-SNDDLALGALFECQRRGISVP 204 (268)
T ss_pred HHHHcC-------CCCCceeEeccCCCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHhCCCCC
Confidence 544443 1101111111111112234455555444 4566554 445667778999999987543
No 143
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=97.19 E-value=0.069 Score=55.32 Aligned_cols=189 Identities=12% Similarity=0.015 Sum_probs=109.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++++... ..+..+++-+.++ . |+.+.+. .++ .++..-.+....++..++++||-..+...
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~~~~~~~~---~------g~~~~~~--~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~- 67 (268)
T cd06298 1 TVGVIIPDITNSYFAELARGIDDIATM---Y------KYNIILS--NSD-NDKEKELKVLNNLLAKQVDGIIFMGGKIS- 67 (268)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHHH---c------CCeEEEE--eCC-CCHHHHHHHHHHHHHhcCCEEEEeCCCCc-
Confidence 4899998654 3333444443333 2 3344443 322 56766667777788778888884222211
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC----c---hhHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD----N---LVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~----~---~~~~~ 150 (821)
..+...+...++|+|....... ... +....+++...+..+++.+...|-++++++..+.. . ...++
T Consensus 68 ~~~~~~l~~~~ipvV~~~~~~~----~~~---~~~v~~d~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~gf~ 140 (268)
T cd06298 68 EEHREEFKRSPTPVVLAGSVDE----DNE---LPSVNIDYKKAAFEATELLIKNGHKKIAFISGPLEDSINGDERLAGYK 140 (268)
T ss_pred HHHHHHHhcCCCCEEEEccccC----CCC---CCEEEECcHHHHHHHHHHHHHcCCceEEEEeCCcccccchhHHHHHHH
Confidence 2344456677999999854322 111 22356677777888888888889999999975332 2 34445
Q ss_pred HHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcCC-CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNSS-ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~~-~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ ..+. ......+.......++++.+.. +++|+. ++...+..+++++++.|+.-+
T Consensus 141 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~~~~~~l~~~g~~vp 204 (268)
T cd06298 141 EALSEAN----------IEFDESLIFEGDYTYESGYELAEELLEDGKPTAAFV-TDDELAIGILNAAQDAGLKVP 204 (268)
T ss_pred HHHHHcC----------CCCCHHHeEeCCCChhHHHHHHHHHhcCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCc
Confidence 5554443 2211 1111111223334556666554 566664 455557789999999998644
No 144
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=97.18 E-value=0.067 Score=56.52 Aligned_cols=189 Identities=8% Similarity=0.023 Sum_probs=105.0
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEE-EcCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAI-FGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~ai-iGp~~s~~ 76 (821)
.||++.+.-. ..+..+++.+.++ . | +++.+.++. .++....+...+++.++++++ ++|..+..
T Consensus 28 ~I~vi~~~~~~~f~~~~~~~i~~~~~~---~------G--~~~~~~~~~-~d~~~~~~~~~~l~~~~~dgiii~~~~~~~ 95 (295)
T PRK10653 28 TIALVVSTLNNPFFVSLKDGAQKEADK---L------G--YNLVVLDSQ-NNPAKELANVQDLTVRGTKILLINPTDSDA 95 (295)
T ss_pred eEEEEecCCCChHHHHHHHHHHHHHHH---c------C--CeEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEcCCChHH
Confidence 5888887533 4455555555554 2 2 344555633 677777777788888888744 46655444
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC-CCC-EEEEEEecCC---c---hhH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM-DWD-TFTIIYETHD---N---LVY 148 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~-~w~-~v~ii~~~~~---~---~~~ 148 (821)
.......+...++|+|....... ....+..+.+.+..-+..+++.+... +.+ +++++..+.. . ...
T Consensus 96 ~~~~l~~~~~~~ipvV~~~~~~~------~~~~~~~V~~D~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~R~~g 169 (295)
T PRK10653 96 VGNAVKMANQANIPVITLDRGAT------KGEVVSHIASDNVAGGKMAGDFIAKKLGEGAKVIQLEGIAGTSAARERGEG 169 (295)
T ss_pred HHHHHHHHHHCCCCEEEEccCCC------CCceeeEEccChHHHHHHHHHHHHHHhCCCceEEEEEccCCCccHHHHHHH
Confidence 33445667778999999853221 11223455666665567777777654 543 5666554322 1 233
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEEEc-CCCCCChHHHHHHhhcCCCcEE-EEeCChhHHHHHHHHHHHccc
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIRQL-PPDTDDYRPLLKEIKNSSESHI-LLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~d~~~~l~~lk~~~~~~i-vl~~~~~~~~~~l~~a~~~g~ 218 (821)
+++.+++. |..+..... ..+..+....+.++.+..++.- +++.....+..+++++++.|+
T Consensus 170 f~~al~~~----------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~l~al~~~G~ 231 (295)
T PRK10653 170 FKQAVAAH----------KFNVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK 231 (295)
T ss_pred HHHHHhhC----------CCEEEEecCCCCCHHHHHHHHHHHHHhCCCcCEEEECCChhHHHHHHHHHHcCC
Confidence 44444443 344432111 1111123344556655544432 333444556678999999997
No 145
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=97.17 E-value=0.029 Score=58.72 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=117.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIE 81 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~ 81 (821)
.||++.|.-....-..+-.++++.=++. |+.+ .+..++ .++..- +....|.+++|+++|=.........+.
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a~~~-----Gy~l--~l~~t~-~~~~~e-~~i~~l~~~~vDGiI~~s~~~~~~~l~ 73 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEAREH-----GYQL--LLCNTG-DDEEKE-EYIELLLQRRVDGIILASSENDDEELR 73 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHHHHT-----TCEE--EEEEET-TTHHHH-HHHHHHHHTTSSEEEEESSSCTCHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHHc-----CCEE--EEecCC-CchHHH-HHHHHHHhcCCCEEEEecccCChHHHH
Confidence 5899999877333333333333332222 3344 445534 566665 777777777888888443333345666
Q ss_pred HHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCE-EEEEEecCC---c---hhHHHHHHH
Q psy16206 82 SMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDT-FTIIYETHD---N---LVYLQQVLE 154 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~-v~ii~~~~~---~---~~~~~~~~~ 154 (821)
.+.+. ++|+|........ ....++ +..++..-+..+++.+...|.++ ++++..+.+ . ..+++++++
T Consensus 74 ~~~~~-~iPvV~~~~~~~~---~~~~~~---V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~ 146 (279)
T PF00532_consen 74 RLIKS-GIPVVLIDRYIDN---PEGVPS---VYIDNYEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALK 146 (279)
T ss_dssp HHHHT-TSEEEEESS-SCT---TCTSCE---EEEEHHHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHH
T ss_pred HHHHc-CCCEEEEEeccCC---cccCCE---EEEcchHHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHH
Confidence 77777 9999988644332 112232 34556666778888899999999 999988765 2 333455555
Q ss_pred hcCCCCCcCCCCCCeEEEEEcCCCCCCh---HHHHHHhhcCCCcE-EEEeCChhHHHHHHHHHHHcc-ccCcc
Q psy16206 155 NAHDDDKEIRPGRPSVTIRQLPPDTDDY---RPLLKEIKNSSESH-ILLDCSMDKTVTILKQAKEVH-LMGDY 222 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v~~~~~~~~~~d~---~~~l~~lk~~~~~~-ivl~~~~~~~~~~l~~a~~~g-~~~~~ 222 (821)
+.+ ..+....+.....++ ...++++.+..|++ .|+++....+.-+++++++.| +..+.
T Consensus 147 ~~G----------l~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~~nd~~A~ga~~~l~~~gr~~ip~ 209 (279)
T PF00532_consen 147 EAG----------LPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFCANDMMAIGAIRALRERGRLKIPE 209 (279)
T ss_dssp HTT----------SCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEESSHHHHHHHHHHHHHTT-TCTTT
T ss_pred HcC----------CCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEEeCHHHHHHHHHHHHHcCCcccCh
Confidence 554 545433322222333 34566666666662 444566777888999999999 65554
No 146
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.10 E-value=0.09 Score=55.46 Aligned_cols=198 Identities=9% Similarity=-0.017 Sum_probs=107.3
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcchHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIENRNII 80 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~~~~v 80 (821)
|||++.+.........+..++++.-+.. |+++.+. .+ ..+++..-.+....++.+++++|| .|.........
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~ 73 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKL-----GIEVVAT-TD-AQFDPAKQVADIETTISQKPDIIISIPVDPVSTAAA 73 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHc-----CCEEEEe-cC-CCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHH
Confidence 7999997544333333444444432221 3344322 23 336777667777788888888775 44332222233
Q ss_pred HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---c---hhHHHHH
Q psy16206 81 ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD---N---LVYLQQV 152 (821)
Q Consensus 81 ~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~---~~~~~~~ 152 (821)
...+...++|+|......... .....++..+..++...++.+++++... |-++++++..+.+ . ..++.+.
T Consensus 74 i~~~~~~~iPvV~~~~~~~~~--~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~ 151 (294)
T cd06316 74 YKKVAEAGIKLVFMDNVPSGL--EHGKDYAGIVTDDNYGNGQIAADALAKALPGKGKVGLIYHGADYFVTNQRDQGFKET 151 (294)
T ss_pred HHHHHHcCCcEEEecCCCccc--ccCcceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCcccHHHHHHHHHHH
Confidence 344567899999875432210 1112233446666666778888888765 8899999975432 1 3344444
Q ss_pred HHhcCCCCCcCCCCCCeEEEEEcCCC-CCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 153 LENAHDDDKEIRPGRPSVTIRQLPPD-TDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~~~~~~~-~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
+++.. . ...+. ...... .......++++.... ++.|+ +++...+..+++.+++.|+
T Consensus 152 l~~~~-------~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~ 210 (294)
T cd06316 152 IKKNY-------P-DITIV-AEKGIDGPSKAEDIANAMLTQNPDLKGIY-AVWDVPAEGVIAALRAAGR 210 (294)
T ss_pred HHHhC-------C-CcEEE-eecCCcchhHHHHHHHHHHHhCCCeeEEE-eCCCchhHHHHHHHHHcCC
Confidence 44332 1 11111 111111 112234455554333 44444 4456678889999999997
No 147
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=97.09 E-value=0.05 Score=56.38 Aligned_cols=191 Identities=11% Similarity=-0.038 Sum_probs=107.8
Q ss_pred cEEEEeCCC-c----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcch
Q psy16206 2 KIVGIFGPN-E----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~-~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~ 76 (821)
.||+++|.. . ..+..+++.+.++ . |+.+ .+.+++ .++..-.+....+...++++||-......
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~~i~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~~dgiii~~~~~~ 68 (269)
T cd06288 1 TIGLISDEIATTPFAVEIILGAQDAARE---H------GYLL--LVVNTG-GDDELEAEAVEALLDHRVDGIIYATMYHR 68 (269)
T ss_pred CeEEEeCCCCCCccHHHHHHHHHHHHHH---C------CCEE--EEEeCC-CCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 489999874 3 3455555555544 1 3344 444423 45555555666777778888886443322
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---chhHHHHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---NLVYLQQVL 153 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~~~~~~~~~ 153 (821)
.. .......++|+|....... . ..+..+.+++...+..+++.+...|-++++++..+.. ...+.+.+.
T Consensus 69 ~~--~~~~~~~~ipvv~~~~~~~----~---~~~~~v~~d~~~~~~~a~~~l~~~g~~~i~~l~~~~~~~~~~~R~~gf~ 139 (269)
T cd06288 69 EV--TLPPELLSVPTVLLNCYDA----D---GALPSVVPDEEQGGYDATRHLLAAGHRRIAFINGEPWMLAAKDRLKGYR 139 (269)
T ss_pred hh--HHHHHhcCCCEEEEecccC----C---CCCCeEEEccHHHHHHHHHHHHHcCCceEEEEeCCccchhHHHHHHHHH
Confidence 11 1223457899998753322 1 1133466777778888888888889999999976543 122333333
Q ss_pred HhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 154 ENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+... .++..+. ....+.+..+....++++.+.. +++|+. ++...+..+++++++.|+.-+
T Consensus 140 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~~~~~~l~~~g~~vp 204 (269)
T cd06288 140 QALA-------EAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTAIFC-GNDRMAMGAYQALLERGLRIP 204 (269)
T ss_pred HHHH-------HcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCCEEEE-eCcHHHHHHHHHHHHcCCCCc
Confidence 3332 2222211 1122222223444556665443 566644 555667778899999998643
No 148
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=97.08 E-value=0.12 Score=53.98 Aligned_cols=208 Identities=11% Similarity=0.003 Sum_probs=107.3
Q ss_pred cEEEEeCCC--chHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecC-CChhHHHHHHHHHhhcCeEEEEcCCCcc-hH
Q psy16206 2 KIVGIFGPN--EEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVEN-YDSLHTAKLMCNATSEGIAAIFGPQSIE-NR 77 (821)
Q Consensus 2 ~IG~i~~~~--~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~-~~~~~a~~~a~~li~~~V~aiiGp~~s~-~~ 77 (821)
|||++++.. .......++-..+...+. |+.+.+...+.+. .++..-.+....++.++|++||=...+. ..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~~~i~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~ 74 (280)
T cd06303 1 KIAVIYPGQQISDYWVRNIASFTARLEEL------NIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSLRHR 74 (280)
T ss_pred CeeEEecCccHHHHHHHHHHHHHHHHHHc------CCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCchhhH
Confidence 799999974 322222222222233333 3455554433221 2455555666677888888887433222 22
Q ss_pred HHHHHHhccCCCceeeecc-CCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh--CCCCEEEEEEecCC--chhHHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFW-DPNKYFIPTNGVHGVNVYPESHLISKGISVIIND--MDWDTFTIIYETHD--NLVYLQQV 152 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~-~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~--~~w~~v~ii~~~~~--~~~~~~~~ 152 (821)
..+.. +...++|.+.... .... ......+..-.+.+.+..-+..+++.+.. .|.++++++..... ...+.+.+
T Consensus 75 ~~~~~-l~~~~~p~V~i~~~~~~~-~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~g~~~i~~l~~~~~~~~~~R~~gf 152 (280)
T cd06303 75 KLIER-VLASGKTKIILQNITTPV-KAWLKHQPLLYVGFDHAAGARLLADYFIKRYPNHARYAMLYFSPGYISTARGDTF 152 (280)
T ss_pred HHHHH-HHhCCCCeEEEeCCCCCc-cccccCCCceEeCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCcchhHHHHHH
Confidence 33444 3346677766522 1110 00001122344667777777888888877 89999999965432 22233333
Q ss_pred HHhcCCCCCcCCCC-CCeEEEEEcCC-CCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccCcceEEE
Q psy16206 153 LENAHDDDKEIRPG-RPSVTIRQLPP-DTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMGDYQNYI 226 (821)
Q Consensus 153 ~~~~~~~~~~~~~~-g~~v~~~~~~~-~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i 226 (821)
.+... .+ ++.+....... ...+....++++.+.. +++|+ +++...+.-+++++++.|+. .+...+
T Consensus 153 ~~al~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~l~al~~~G~~-~dv~vv 221 (280)
T cd06303 153 IDCVH-------ARNNWTLTSEFYTDATRQKAYQATSDILSNNPDVDFIY-ACSTDIALGASDALKELGRE-DDILIN 221 (280)
T ss_pred HHHHH-------hCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCCcEEE-ECCcHHHHHHHHHHHHcCCC-CCcEEE
Confidence 33333 22 33332211111 1122344555554443 44444 55566777899999999985 343333
No 149
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=97.02 E-value=0.12 Score=53.40 Aligned_cols=194 Identities=11% Similarity=0.052 Sum_probs=106.4
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIE 81 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~ 81 (821)
.||+++|.........+.-.+++.-+.. |+. +.+.+++ .++..-.+....++.+++++|+-..+......+.
T Consensus 1 ~igvi~~~~~~~~~~~~~~~~~~~~~~~-----g~~--~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 72 (264)
T cd06274 1 TIGLIIPDLENRSFARIAKRLEALARER-----GYQ--LLIACSD-DDPETERETVETLIARQVDALIVAGSLPPDDPYY 72 (264)
T ss_pred CEEEEeccccCchHHHHHHHHHHHHHHC-----CCE--EEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEcCCCCchHHHH
Confidence 4899998655222223333333332222 333 3444433 5666666677778888988887433332222233
Q ss_pred HHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHHHHHh
Q psy16206 82 SMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQVLEN 155 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~~~~~ 155 (821)
.+...++|+|....... ....++ +...+...+..+++.+...|-++++++..... . ..++.+.+++
T Consensus 73 -~~~~~~ipvV~~~~~~~----~~~~~~---V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~ 144 (264)
T cd06274 73 -LCQKAGLPVVALDRPGD----PSRFPS---VVSDNRDGAAELTRELLAAPPEEVLFLGGLPELSPSRERLAGFRQALAD 144 (264)
T ss_pred -HHHhcCCCEEEecCccC----CCCCCE---EEEccHHHHHHHHHHHHHCCCCcEEEEeCCCcccchHHHHHHHHHHHHH
Confidence 45668899998854322 111222 44566666677888888889999999876432 1 3344445544
Q ss_pred cCCCCCcCCCCCCeEE--EE-EcCCCCCChHHHHHHhhcC---CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 156 AHDDDKEIRPGRPSVT--IR-QLPPDTDDYRPLLKEIKNS---SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 156 ~~~~~~~~~~~g~~v~--~~-~~~~~~~d~~~~l~~lk~~---~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
.+ ..+. .. .-+.+...-...++++.+. .+++|+. .+...+..+++++++.|+.-+.
T Consensus 145 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~ip~ 206 (264)
T cd06274 145 AG----------LPVQPDWIYAEGYSPESGYQLMAELLARLGRLPRALFT-TSYTLLEGVLRFLRERPGLAPS 206 (264)
T ss_pred cC----------CCCCcceeecCCCChHHHHHHHHHHHccCCCCCcEEEE-cChHHHHHHHHHHHHcCCCCCc
Confidence 43 2111 11 1111112233445555433 2565554 4556677899999999986443
No 150
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=97.00 E-value=0.12 Score=53.78 Aligned_cols=190 Identities=12% Similarity=0.017 Sum_probs=107.3
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
.||++++... .++..+++-+.++++ ..+++.+.+++ .++..-.+....++.+++++|| .|.....
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~ 70 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLN---------PGVKVTVVSAD-YDLNKQVSQIDNFIAAKVDLILLNAVDSKG 70 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhC---------CCeEEEEccCC-CCHHHHHHHHHHHHHhCCCEEEEeCCChhH
Confidence 5899998655 445556666555542 13455555533 5666666666777777887765 4433322
Q ss_pred -HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC--chhHHHH
Q psy16206 77 -RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD--NLVYLQQ 151 (821)
Q Consensus 77 -~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~--~~~~~~~ 151 (821)
...+.. +...++|+|....... ... ..+.+++...++.+++.+... |.++++++..... ...+.+.
T Consensus 71 ~~~~i~~-~~~~~ipvv~~~~~~~-----~~~---~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~g~~~~~~~~R~~g 141 (271)
T cd06321 71 IAPAVKR-AQAAGIVVVAVDVAAE-----GAD---ATVTTDNVQAGEISCQYLADRLGGKGNVAILNGPPVSAVLDRVAG 141 (271)
T ss_pred hHHHHHH-HHHCCCeEEEecCCCC-----Ccc---ceeeechHHHHHHHHHHHHHHhCCCceEEEEeCCCCchHHHHHHH
Confidence 333433 4567899999854321 111 245677777788888888776 9999999976432 2222233
Q ss_pred HHHhcCCCCCcCCCC-CCeEEEEEcCCC--CCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 152 VLENAHDDDKEIRPG-RPSVTIRQLPPD--TDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~-g~~v~~~~~~~~--~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
+.+... .. +..........+ ...-...++++.+. .+++|+. .+...+..+++++++.|+
T Consensus 142 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 205 (271)
T cd06321 142 CKAALA-------KYPGIKLLSDDQNGKGSRDGGLRVMQGLLTRFPKLDGVFA-INDPTAIGADLAAKQAGR 205 (271)
T ss_pred HHHHHH-------hCCCcEEEeeecCCCCChhhHHHHHHHHHHhCCCCCEEEE-CCchhHHHHHHHHHHcCC
Confidence 333332 22 332211111111 11223455555444 3565544 455566778899999987
No 151
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=96.99 E-value=0.12 Score=54.77 Aligned_cols=198 Identities=8% Similarity=-0.005 Sum_probs=105.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
|||++.+... ..+..+++-+.++. + .| +++.+.+.+ .++..-.+...+++.++|.+|| .|..+..
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~---~----~g--~~~~~~~~~-~~~~~q~~~i~~l~~~~vdgiii~~~~~~~ 70 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKEN---G----GK--VEFTFYDAK-NNQSTQNEQIDTALAKGVDLLAVNLVDPTA 70 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhh---C----CC--eeEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEecCchhh
Confidence 6999998644 44455555555554 1 12 555666633 6777667777788888888766 4544433
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCC---------E--EEEEEecC
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWD---------T--FTIIYETH 143 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~---------~--v~ii~~~~ 143 (821)
...+...+...++|+|........ .+.....-+..+.+++...++.+++++..+ +-+ + ++++..+.
T Consensus 71 ~~~~~~~~~~~giPvV~~~~~~~~-~~~~~~~~~~~V~~d~~~~g~~~a~~l~~~~~~~~~~~~~~~~g~~~i~~~~g~~ 149 (303)
T cd01539 71 AQTVINKAKQKNIPVIFFNREPEE-EDIKSYDKAYYVGTDAEQSGILQGKLIADYWNANKDALDKNGDGIIQYVMLKGEP 149 (303)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCcc-cccccccccceeeecHHHHHHHHHHHHHHHhhccccccccCCCCceEEEEEEcCC
Confidence 334444567789999988543221 001111123446667666677777777543 222 2 34454432
Q ss_pred C------chhHHHHHHHhcCCCCCcCCCCCCeEEEEE-cCCC--CCChHHHHHHhhcC-C--CcEEEEeCChhHHHHHHH
Q psy16206 144 D------NLVYLQQVLENAHDDDKEIRPGRPSVTIRQ-LPPD--TDDYRPLLKEIKNS-S--ESHILLDCSMDKTVTILK 211 (821)
Q Consensus 144 ~------~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~--~~d~~~~l~~lk~~-~--~~~ivl~~~~~~~~~~l~ 211 (821)
. ....+.+.+++.+ ..+.... ...+ .......++++... . +++|+ +.....+..+++
T Consensus 150 ~~~~~~~R~~gf~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ai~-~~~d~~a~g~~~ 218 (303)
T cd01539 150 GHPDAIARTKYSIETLNDAG----------IKTEELASDTANWDRAQAKDKMDALLLKYGDKIEAVI-ANNDAMALGAIE 218 (303)
T ss_pred CCchhhhhhhhHHHHHHhcC----------CCeEEEEeecCCCCHHHHHHHHHHHHHhcCCCccEEE-ECCchHHHHHHH
Confidence 2 1333444554443 3332211 1111 12223345555433 2 45544 344555667888
Q ss_pred HHHHccccCc
Q psy16206 212 QAKEVHLMGD 221 (821)
Q Consensus 212 ~a~~~g~~~~ 221 (821)
++++.|+..+
T Consensus 219 al~~~g~~~p 228 (303)
T cd01539 219 ALQKYGYNKG 228 (303)
T ss_pred HHHHcCCCcC
Confidence 8888887643
No 152
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=96.98 E-value=0.078 Score=54.97 Aligned_cols=193 Identities=12% Similarity=0.043 Sum_probs=106.0
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.+... ..+..+++-+.++ . |+++ .+.+++ .++..-.+....+..+++++||=.......
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 68 (269)
T cd06275 1 TIGMLVTTSTNPFFAEVVRGVEQYCYR---Q------GYNL--ILCNTE-GDPERQRSYLRMLAQKRVDGLLVMCSEYDQ 68 (269)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHHHH---c------CCEE--EEEeCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCh
Confidence 4899998544 4455566555544 2 2344 345533 567666677778888888877632222222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---chhHHHHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---NLVYLQQVLE 154 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~~~~~~~~~~ 154 (821)
..+..+....++|+|....... ....+ ....++...++.+++.+...|-++++++..... ...+.+.+.+
T Consensus 69 ~~~~~l~~~~~ipvV~i~~~~~----~~~~~---~V~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~r~~gf~~ 141 (269)
T cd06275 69 PLLAMLERYRHIPMVVMDWGPE----DDFAD---KIQDNSEEGGYLATRHLIELGHRRIGCITGPLEKAPAQQRLAGFRR 141 (269)
T ss_pred HHHHHHHhcCCCCEEEEecccC----CCCCC---eEeeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHH
Confidence 2223333456899998854322 11122 245566667788888888889999999975332 2223333333
Q ss_pred hcCCCCCcCCCCCCeEEEE-Ec--CCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 155 NAHDDDKEIRPGRPSVTIR-QL--PPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v~~~-~~--~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
... .++..+... .. ..+.......++++.+.. ++.|+ +++...+..+++.+++.|..-+
T Consensus 142 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~vp 205 (269)
T cd06275 142 AMA-------EAGLPVNPGWIVEGDFECEGGYEAMQRLLAQPKRPTAVF-CGNDLMAMGALCAAQEAGLRVP 205 (269)
T ss_pred HHH-------HcCCCCCHHHhccCCCChHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCC
Confidence 332 223322111 11 111123344566655443 45444 4456667788899999887543
No 153
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.93 E-value=0.16 Score=52.70 Aligned_cols=190 Identities=9% Similarity=-0.026 Sum_probs=106.3
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.|... .....+++-+.+ +. |+++. +..++ .++..-.+..+.+...++++||--.+....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~---~~------gy~v~--~~~~~-~~~~~~~~~i~~~~~~~~dgiii~~~~~~~ 68 (269)
T cd06293 1 TIGLVVPDIANPFFAELADAVEEEAD---AR------GLSLV--LCATR-NRPERELTYLRWLDTNHVDGLIFVTNRPDD 68 (269)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHHHH---HC------CCEEE--EEeCC-CCHHHHHHHHHHHHHCCCCEEEEeCCCCCH
Confidence 4899998644 233334433333 22 34443 44422 456555556666677788888854333222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~ 151 (821)
..+..+. ..++|+|........ . . .-...+++...+..+++.+...|-++++++..+.. . ..++++
T Consensus 69 ~~~~~~~-~~~~pvV~i~~~~~~---~-~---~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~ 140 (269)
T cd06293 69 GALAKLI-NSYGNIVLVDEDVPG---A-K---VPKVFCDNEQGGRLATRHLARAGHRRIAFVGGPDALISARERYAGYRE 140 (269)
T ss_pred HHHHHHH-hcCCCEEEECCCCCC---C-C---CCEEEECCHHHHHHHHHHHHHCCCceEEEEecCcccccHHHHHHHHHH
Confidence 3344433 357999988643221 1 1 22366788888888889888889999999975432 1 334444
Q ss_pred HHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 152 VLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
.+++.+ .... .........+....+.++.+. .+++|+. ++...+..+++++.+.|..-+.
T Consensus 141 a~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vp~ 205 (269)
T cd06293 141 ALAEAH----------IPEVPEYVCFGDYTREFGRAAAAQLLARGDPPTAIFA-ASDEIAIGLLEVLRERGLSIPG 205 (269)
T ss_pred HHHHcC----------CCCChheEEecCCCHHHHHHHHHHHHcCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCcc
Confidence 444443 2211 111111122333455555433 3565554 4556677888999999975443
No 154
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=96.92 E-value=0.1 Score=53.94 Aligned_cols=188 Identities=11% Similarity=0.012 Sum_probs=104.7
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
.||+++|.-. .....+++-+.++ . |+.+.+ ..++..++..-.+....++.++++++|- +.....
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~----~-----~~~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~ 69 (264)
T cd01574 1 TIGVVTTDLALHGPSSTLAAIESAARE----A-----GYAVTL--SMLAEADEEALRAAVRRLLAQRVDGVIVNAPLDDA 69 (264)
T ss_pred CEEEEeCCCCcccHHHHHHHHHHHHHH----C-----CCeEEE--EeCCCCchHHHHHHHHHHHhcCCCEEEEeCCCCCh
Confidence 4899998544 3334444444433 1 334443 3423234455556666677778888873 332222
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQ 150 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~ 150 (821)
. .+.. ....++|+|....... +.+..+..++...++.+++.+...|-++++++..+.. . ...+.
T Consensus 70 ~-~~~~-~~~~~ipvv~~~~~~~--------~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~ 139 (264)
T cd01574 70 D-AALA-AAPADVPVVFVDGSPS--------PRVSTVSVDQEGGARLATEHLLELGHRTIAHVAGPEEWLSARARLAGWR 139 (264)
T ss_pred H-HHHH-HHhcCCCEEEEeccCC--------CCCCEEEeCcHHHHHHHHHHHHHCCCCEEEEEecCCccchHHHHHHHHH
Confidence 2 3333 3467899999854321 1123466677778888888888899999999865433 1 23344
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEEEc-CCCCCChHHHHHHhhcCC-CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIRQL-PPDTDDYRPLLKEIKNSS-ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~d~~~~l~~lk~~~-~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.++.. +..+..... ..+..+....++++.++. +++|+ .++...+..+++++.+.|..-+
T Consensus 140 ~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~-~~~d~~a~g~~~~~~~~g~~ip 201 (264)
T cd01574 140 AALEAA----------GIAPPPVLEGDWSAESGYRAGRELLREGDPTAVF-AANDQMALGVLRALHELGLRVP 201 (264)
T ss_pred HHHHHC----------CCCcceeeecCCCHHHHHHHHHHHHhCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCc
Confidence 444433 232221111 111222334555555443 55544 4456667789999999997533
No 155
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=96.92 E-value=0.11 Score=53.92 Aligned_cols=195 Identities=11% Similarity=0.068 Sum_probs=111.2
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcc---hH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIE---NR 77 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~---~~ 77 (821)
.||++.+.........+..++++.-++. | +++.+.+++ .++....+..++++..+|++|| -|..+. ..
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~-----g--~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~ 72 (273)
T cd01541 1 NIGVITTYISDYIFPSIIRGIESVLSEK-----G--YSLLLASTN-NDPERERKCLENMLSQGIDGLIIEPTKSALPNPN 72 (273)
T ss_pred CeEEEeCCccchhHHHHHHHHHHHHHHc-----C--CEEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEecccccccccc
Confidence 3888887655333333444444443332 2 344455533 6777777788888888998887 443221 11
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC--c---hhHHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD--N---LVYLQQV 152 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~--~---~~~~~~~ 152 (821)
......+...++|+|........ . . +..+..++...+..+++.+...|.++++++...+. . ...+.+.
T Consensus 73 ~~~~~~~~~~~ipvV~~~~~~~~---~-~---~~~V~~D~~~~g~~~~~~l~~~G~~~i~~l~~~~~~~~~~r~~g~~~~ 145 (273)
T cd01541 73 IDLYLKLEKLGIPYVFINASYEE---L-N---FPSLVLDDEKGGYKATEYLIELGHRKIAGIFKADDLQGVKRMKGFIKA 145 (273)
T ss_pred HHHHHHHHHCCCCEEEEecCCCC---C-C---CCEEEECcHHHHHHHHHHHHHcCCcCEEEecCCCcccHHHHHHHHHHH
Confidence 12223356779999988543221 1 1 23466777777888888888889999998875443 2 2334444
Q ss_pred HHhcCCCCCcCCCCCCeE---EEEEcCCC--CCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 153 LENAHDDDKEIRPGRPSV---TIRQLPPD--TDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v---~~~~~~~~--~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
+++.+ ..+ ....+..+ .......++++.+. .+++|+ +.+...+.-+++++.+.|+..+.
T Consensus 146 l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~av~-~~~d~~a~g~~~al~~~g~~~p~ 211 (273)
T cd01541 146 YREHG----------IPFNPSNVITYTTEEKEEKLFEKIKEILKRPERPTAIV-CYNDEIALRVIDLLKELGLKIPE 211 (273)
T ss_pred HHHcC----------CCCChHHEEeccccchhhHHHHHHHHHHcCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCC
Confidence 44433 211 11112211 12234455555443 356554 45556677799999999986443
No 156
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=96.87 E-value=0.22 Score=51.56 Aligned_cols=189 Identities=7% Similarity=-0.050 Sum_probs=109.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||+++|... .....+++-+.++ . |+++.+ .+++ .++..-.+....++.++|++||--.+....
T Consensus 1 ~igvi~p~~~~~~~~~~~~g~~~~a~~---~------g~~~~~--~~~~-~~~~~~~~~i~~~~~~~vdgii~~~~~~~~ 68 (268)
T cd06270 1 TIGLVVSDLDGPFFGPLLSGVESVARK---A------GKHLII--TAGH-HSAEKEREAIEFLLERRCDALILHSKALSD 68 (268)
T ss_pred CEEEEEccccCcchHHHHHHHHHHHHH---C------CCEEEE--EeCC-CchHHHHHHHHHHHHcCCCEEEEecCCCCH
Confidence 4899998655 4455555555544 2 234443 3423 455555566667788888888753332222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~~ 151 (821)
..+ ..+...++|+|........ . ... .+..++...++.+++.+...|-++++++..+.. ....+++
T Consensus 69 ~~~-~~~~~~~ipvV~~~~~~~~---~-~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~ 140 (268)
T cd06270 69 DEL-IELAAQVPPLVLINRHIPG---L-ADR---CIWLDNEQGGYLATEHLIELGHRKIACITGPLTKEDARLRLQGYRD 140 (268)
T ss_pred HHH-HHHhhCCCCEEEEeccCCC---C-CCC---eEEECcHHHHHHHHHHHHHCCCceEEEEeCCcccccHHHHHHHHHH
Confidence 223 3456779999988543221 1 122 256777778888999998889999999875432 1334444
Q ss_pred HHHhcCCCCCcCCCCCCeE--E-EEEcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSV--T-IRQLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v--~-~~~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+ ..+ . ...-..+..+....++++.+.. +++|+ .+....+..+++.+++.|+.-+
T Consensus 141 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~ip 204 (268)
T cd06270 141 ALAEAG----------IALDESLIIEGDFTEEGGYAAMQELLARGAPFTAVF-CANDEMAAGAISALREHGISVP 204 (268)
T ss_pred HHHHcC----------CCCCcceEEECCCCHHHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCC
Confidence 554443 221 1 1111222234455666665554 45444 4445667779999999998533
No 157
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=96.82 E-value=0.17 Score=52.60 Aligned_cols=168 Identities=10% Similarity=-0.021 Sum_probs=96.4
Q ss_pred EEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecC
Q psy16206 38 LEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPE 116 (821)
Q Consensus 38 l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~ 116 (821)
+++.+.+.+ .++..-.+...+++.++|++||= |..+.........+...++|+|....... ....+......++
T Consensus 30 ~~~~~~~~~-~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~~~----~~~~~~~~~v~~d 104 (272)
T cd06313 30 VDVTWYGGA-LDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTLIA----PLQINVHSFLAPD 104 (272)
T ss_pred CEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCCCC----CCCCceEEEECCC
Confidence 344455533 57777778888888888887774 44333233333445567999999854322 1111223346677
Q ss_pred hhhHHHHHHHHHHhC--CCCEEEEEEecCC---chhHHHHHHHhcCCCCCcCCCC-CCeEEEEEcCC-CCCChHHHHHHh
Q psy16206 117 SHLISKGISVIINDM--DWDTFTIIYETHD---NLVYLQQVLENAHDDDKEIRPG-RPSVTIRQLPP-DTDDYRPLLKEI 189 (821)
Q Consensus 117 ~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~~~~~-~~~d~~~~l~~l 189 (821)
+...+..+++.+... |.++++++..+.. ...+.+.+.+... .+ +..+....... +.......++++
T Consensus 105 ~~~~g~~~~~~l~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (272)
T cd06313 105 NYFMGASVAQALCNAMGGKGKIAMLQGALGHTGAQGRAQGFNDVIK-------KYPDIEVVDEQPANWDVSKAARIWETW 177 (272)
T ss_pred cHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchhHHHHHHHHHHH-------hCCCCEEEeccCCCCCHHHHHHHHHHH
Confidence 777888888888776 8899999975432 2233444444333 22 23332211111 112234455555
Q ss_pred hcCC--CcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 190 KNSS--ESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 190 k~~~--~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
.+.+ +++| ++.+...+..+++.+++.|+
T Consensus 178 l~~~~~~~ai-~~~nd~~a~g~~~al~~~g~ 207 (272)
T cd06313 178 LTKYPQLDGA-FCHNDSMALAAYQIMKAAGR 207 (272)
T ss_pred HHhCCCCCEE-EECCCcHHHHHHHHHHHcCC
Confidence 4443 4544 44556667778899999997
No 158
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.81 E-value=0.095 Score=54.14 Aligned_cols=187 Identities=10% Similarity=0.014 Sum_probs=101.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHHH
Q psy16206 3 IVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIES 82 (821)
Q Consensus 3 IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~~ 82 (821)
||++.+.........+..++++.-+. .|+++.+...+ .+. ...+...+++.++|++||--.+...... ..
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~-----~g~~~~~~~~~---~~~-~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~ 71 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQA-----RGYQPLLINTD---DDE-DLDAALRQLLQYRVDGVIVTSGTLSSEL-AE 71 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHH-----CCCeEEEEcCC---CCH-HHHHHHHHHHHcCCCEEEEecCCCCHHH-HH
Confidence 78898864422222222223222222 13455544433 233 3345566677778988885333333333 44
Q ss_pred HhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHHHHHHhc
Q psy16206 83 MCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQQVLENA 156 (821)
Q Consensus 83 i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~~~~~~~ 156 (821)
.+...++|+|........ ..+..+.+++...+..+++.+...|-++++++..+.. ....+.+.+++.
T Consensus 72 ~~~~~~ipvV~~~~~~~~-------~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~ 144 (266)
T cd06278 72 ECRRNGIPVVLINRYVDG-------PGVDAVCSDNYEAGRLAAELLLAKGCRRIAFIGGPADTSTSRERERGFRDALAAA 144 (266)
T ss_pred HHhhcCCCEEEECCccCC-------CCCCEEEEChHHHHHHHHHHHHHCCCceEEEEcCCCcccchHHHHHHHHHHHHHc
Confidence 566789999998543221 1234577788888888889888889999999986543 123444444444
Q ss_pred CCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHcc
Q psy16206 157 HDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVH 217 (821)
Q Consensus 157 ~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g 217 (821)
+ ..+....... +..+....+.++.+. .+++|+. .+...+..+++.+++.+
T Consensus 145 ~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~-~~~~~a~~~~~~l~~~~ 197 (266)
T cd06278 145 G----------VPVVVEEAGDYSYEGGYEAARRLLASRPRPDAIFC-ANDLLAIGVMDAARQEG 197 (266)
T ss_pred C----------CChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEE-cCcHHHHHHHHHHHHhc
Confidence 3 2222111111 112233445555444 3455554 34555667778777753
No 159
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=96.78 E-value=0.14 Score=52.69 Aligned_cols=193 Identities=8% Similarity=-0.004 Sum_probs=114.3
Q ss_pred EEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 3 IVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 3 IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
||++.|.-. .....+++.+.++ . |+++ .+.+++ .++..-.+..++|+.++++++|...+... .
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~i~~l~~~~~dgii~~~~~~~-~ 68 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE---N------GYQM--LLMNTN-FSIEKEIEALELLARQKVDGIILLATTIT-D 68 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH---C------CCEE--EEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCC-H
Confidence 788887533 4455666655543 2 3344 444533 57777777788888889999986543322 3
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecC-C------chhHHHH
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETH-D------NLVYLQQ 151 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~-~------~~~~~~~ 151 (821)
.+...+...++|+|...... + ....+.++....+..+++.+...|-++++++.... . ....+++
T Consensus 69 ~~~~~~~~~~ipvv~~~~~~-----~----~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~v~~~~~~~~~~~~r~~gf~~ 139 (259)
T cd01542 69 EHREAIKKLNVPVVVVGQDY-----P----GISSVVYDDYGAGYELGEYLAQQGHKNIAYLGVSESDIAVGILRKQGYLD 139 (259)
T ss_pred HHHHHHhcCCCCEEEEeccC-----C----CCCEEEECcHHHHHHHHHHHHHcCCCcEEEEcCCcccchhHHHHHHHHHH
Confidence 34455667789999884311 1 12236667777888899988888999999986432 1 1344455
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCC-CcEEEEeCChhHHHHHHHHHHHccccCcceEEEE
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSS-ESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~-~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
.+++.+ . ..+.......+.......+.++.+.. +++|+.. ....+..+++.+.+.|+.-++-..++
T Consensus 140 ~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~-~d~~a~g~~~~l~~~g~~vp~di~v~ 206 (259)
T cd01542 140 ALKEHG-------I--CPPNIVETDFSYESAYEAAQELLEPQPPDAIVCA-TDTIALGAMKYLQELGRRIPEDISVA 206 (259)
T ss_pred HHHHcC-------C--ChHHeeeccCchhhHHHHHHHHhcCCCCCEEEEc-CcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 555554 2 01111111111223344555555444 5655544 45667789999999998654434443
No 160
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.78 E-value=0.16 Score=52.65 Aligned_cols=188 Identities=12% Similarity=0.017 Sum_probs=104.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
.||++.|... .....+++-+.++ . |+++ .+.+++ .+...-.+....++.+++++|| .|....
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~i~~l~~~~~dgiii~~~~~~- 67 (270)
T cd06296 1 LIGLVFPDLDSPWASEVLRGVEEAAAA---A------GYDV--VLSESG-RRTSPERQWVERLSARRTDGVILVTPELT- 67 (270)
T ss_pred CeEEEECCCCCccHHHHHHHHHHHHHH---c------CCeE--EEecCC-CchHHHHHHHHHHHHcCCCEEEEecCCCC-
Confidence 3789998644 3444455444433 2 3344 444422 4454444556667777888876 343322
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQ 150 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~ 150 (821)
... ...+...++|+|........ .... ....+++...+..+++.+...|.++++++..... ...++.
T Consensus 68 ~~~-~~~~~~~~ipvV~i~~~~~~---~~~~---~~v~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~ 140 (270)
T cd06296 68 SAQ-RAALRRTGIPFVVVDPAGDP---DADV---PSVGATNWAGGLAATEHLLELGHRRIGFITGPPDLLCSRARLDGYR 140 (270)
T ss_pred hHH-HHHHhcCCCCEEEEecccCC---CCCC---CEEEeCcHHHHHHHHHHHHHcCCCcEEEEcCCCcchhHHHHHHHHH
Confidence 222 45567789999998643221 1112 2366777777888888888889999999875432 134444
Q ss_pred HHHHhcCCCCCcCCCCCCeEEE---EEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTI---RQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~---~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
+.+++.+ ..+.. .......++....++++.+. .+++|+ ..+...+..+++.+.+.|+.-
T Consensus 141 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~~~~~~l~~~g~~~ 204 (270)
T cd06296 141 AALAEAG----------IPVDPALVREGDFSTESGFRAAAELLALPERPTAIF-AGNDLMALGVYEAARERGLRI 204 (270)
T ss_pred HHHHHcC----------CCCChHHheeCCCCHHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHhCCCC
Confidence 4444433 22211 11111122333445555443 344444 445566778999999999863
No 161
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=96.72 E-value=0.27 Score=52.72 Aligned_cols=187 Identities=13% Similarity=0.046 Sum_probs=105.0
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE--cCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF--GPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii--Gp~~s~ 75 (821)
.||++++.-. .....+++-+.++ . |+.+. +.+.+ .++..-.+....+...+|++|| ++...
T Consensus 61 ~Igvv~~~~~~~f~~~l~~~i~~~~~~---~------g~~~~--i~~~~-~~~~~~~~~~~~l~~~~vdGiIi~~~~~~- 127 (329)
T TIGR01481 61 TVGVIIPDISNIYYAELARGIEDIATM---Y------KYNII--LSNSD-EDPEKEVQVLNTLLSKQVDGIIFMGGTIT- 127 (329)
T ss_pred EEEEEeCCCCchhHHHHHHHHHHHHHH---c------CCEEE--EEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-
Confidence 4889987533 3334444433322 2 33443 34422 4555555556667777888777 33222
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecC--C--c---hhH
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETH--D--N---LVY 148 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~--~--~---~~~ 148 (821)
..+...+...++|+|....... .... ....+++..-+..+++.+...|.++++++.... . . ..+
T Consensus 128 --~~~~~~l~~~~iPvV~~~~~~~----~~~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~~R~~G 198 (329)
T TIGR01481 128 --EKLREEFSRSPVPVVLAGTVDK----ENEL---PSVNIDYKQATKEAVGELIAKGHKSIAFVGGPLSDSINGEDRLEG 198 (329)
T ss_pred --hHHHHHHHhcCCCEEEEecCCC----CCCC---CEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccccchHHHHHH
Confidence 2334455667899998753221 1112 235566666677788888888999999996432 1 1 233
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+.+++.+ ..+. ...-.....+....++++.+.++++|+. .+...+..+++++++.|+.-+
T Consensus 199 f~~~l~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~ai~~-~~d~~A~g~~~al~~~g~~vP 263 (329)
T TIGR01481 199 YKEALNKAG----------IQFGEDLVCEGKYSYDAGYKAFAELKGSLPTAVFV-ASDEMAAGILNAAMDAGIKVP 263 (329)
T ss_pred HHHHHHHcC----------CCCCcceEEecCCChHHHHHHHHHHhCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCC
Confidence 444454443 2221 1111111223345566666667787665 445677789999999998644
No 162
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=96.71 E-value=0.22 Score=52.27 Aligned_cols=194 Identities=15% Similarity=0.080 Sum_probs=104.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
.||++++... ..+..+++-+.++ . | +++.+.+++ .++..-.+...+++.++|++|| .|..+..
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~---~------g--~~~~~~~~~-~~~~~~~~~i~~~~~~~vdgiii~~~~~~~ 68 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKE---L------G--AEVIVQNAN-GDPAKQISQIENMIAKGVDVLVIAPVDGEA 68 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHH---c------C--CEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecCChhh
Confidence 4899998543 3344455544443 2 2 344555633 5777667777788888888877 4433332
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC------CCCEEEEEEecCC---c--
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM------DWDTFTIIYETHD---N-- 145 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~------~w~~v~ii~~~~~---~-- 145 (821)
.......+...++|+|........ . ...+ .+..++...++.+++.+... |-++++++..+.. .
T Consensus 69 ~~~~l~~l~~~~ipvV~~~~~~~~---~-~~~~--~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~l~g~~~~~~~~~ 142 (288)
T cd01538 69 LASAVEKAADAGIPVIAYDRLILN---S-NVDY--YVSFDNEKVGELQGQALVDGLGAKGKPPGNIELIAGSPTDNNAKL 142 (288)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCC---C-Ccce--EEEeChHHHHHHHHHHHHHHHhhcCCCCceEEEEECCCCCchHHH
Confidence 233334456789999988543221 1 1222 24456556677777766555 8899999865432 2
Q ss_pred -hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCC--CChHHHHHHhhcCC---CcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 146 -LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDT--DDYRPLLKEIKNSS---ESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~--~d~~~~l~~lk~~~---~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
..++.+.+++.+. ..+..+....+..+. .+-...++++.+.. +++|+ ......+..+++++++.|+.
T Consensus 143 R~~gf~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~I~-~~~d~~a~g~~~al~~~g~~ 215 (288)
T cd01538 143 FFNGAMSVLKPLID------SGKITIVGEVATPDWDPETAQKRMENALTANYNKVDGVL-AANDGTAGGAIAALKAAGLA 215 (288)
T ss_pred HHHHHHHHHHhccc------cCCeeEEeccccCCCCHHHHHHHHHHHHHhCCCCccEEE-eCCcHHHHHHHHHHHHcCCC
Confidence 3333444443320 001222211221111 11223455554433 34444 34456677789999999986
Q ss_pred C
Q psy16206 220 G 220 (821)
Q Consensus 220 ~ 220 (821)
.
T Consensus 216 ~ 216 (288)
T cd01538 216 G 216 (288)
T ss_pred C
Confidence 4
No 163
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=96.71 E-value=0.2 Score=54.09 Aligned_cols=190 Identities=12% Similarity=0.051 Sum_probs=103.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++++... ..+..+++-+.++ . |+. +.+.+++ .++..-.+....++.+++++||--......
T Consensus 61 ~i~vi~~~~~~~~~~~~~~gi~~~~~~---~------g~~--~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 61 SIGLLATSSEAPYFAEIIEAVEKNCYQ---K------GYT--LILCNAW-NNLEKQRAYLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHHH---C------CCE--EEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEecCCCCH
Confidence 5899998655 3344444444432 2 223 3444423 566666666777777788887632222222
Q ss_pred HHHHHHhcc-CCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHH
Q psy16206 78 NIIESMCQM-FDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~-~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~ 150 (821)
..+ ..+.. .++|+|.....+.. ..... ...+++...+..+++.+...|-+++++|..+.. . ..++.
T Consensus 129 ~~~-~~l~~~~~iPvV~~d~~~~~----~~~~~--~v~~d~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~ 201 (341)
T PRK10703 129 PLL-AMLEEYRHIPMVVMDWGEAK----ADFTD--AIIDNAFEGGYLAGRYLIERGHRDIGVIPGPLERNTGAGRLAGFM 201 (341)
T ss_pred HHH-HHHHhcCCCCEEEEecccCC----cCCCC--eEEECcHHHHHHHHHHHHHCCCCcEEEEeCCccccchHHHHHHHH
Confidence 333 33444 69999988543221 11112 234554455677888887789999999864322 2 33444
Q ss_pred HHHHhcCCCCCcCCCCCCeEEE---EEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTI---RQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~---~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ +.+.. ..-+....+....++++.+. .+++|+. ++...+..+++++.+.|..-+
T Consensus 202 ~~l~~~g----------i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~a~g~~~al~~~g~~ip 266 (341)
T PRK10703 202 KAMEEAN----------IKVPEEWIVQGDFEPESGYEAMQQILSQKHRPTAVFC-GGDIMAMGAICAADEMGLRVP 266 (341)
T ss_pred HHHHHcC----------CCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCC
Confidence 5554443 32211 11111112234455555444 3565554 455667789999999997533
No 164
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=96.70 E-value=0.25 Score=50.97 Aligned_cols=191 Identities=12% Similarity=0.037 Sum_probs=105.3
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||+++|... ..+..+++-+.++. |+ ++.+.+++ .++..-......++..+|++||=.......
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~---------g~--~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 68 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASAA---------GY--STIIGNSD-ENPETENRYLDNLLSQRVDGIIVVPHEQSA 68 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHc---------CC--EEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEcCCCCCh
Confidence 4899998544 44555555555432 22 33344433 466555566667777788888743333233
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~~ 151 (821)
..+ .-+...++|+|........ ...++ ...++..-+..+++.+...|-++++++..... ....+.+
T Consensus 69 ~~~-~~l~~~~ipvV~~~~~~~~----~~~~~---v~~d~~~~~~~~~~~l~~~g~~~I~~i~~~~~~~~~~~R~~gf~~ 140 (265)
T cd06299 69 EQL-EDLLKRGIPVVFVDREITG----SPIPF---VTSDPQPGMTEAVSLLVALGHKKIGYISGPQDTSTGRERLEAFRQ 140 (265)
T ss_pred HHH-HHHHhCCCCEEEEecccCC----CCCCE---EEECcHHHHHHHHHHHHHcCCCcEEEEeCCCCcccHHHHHHHHHH
Confidence 334 4445679999988654321 12232 23344444556667777779999999865432 1344555
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+ .. .......... ...+....++++.+..++.|+. ++...+..+++++++.|+.-+
T Consensus 141 ~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~av~~-~~d~~a~gv~~al~~~g~~vp 202 (265)
T cd06299 141 ACASLG-------LE-VNEDLVVLGGYSQESGYAGATKLLDQGATAIIA-GDSMMTIGAIRAIHDAGLVIG 202 (265)
T ss_pred HHHHCC-------CC-CChHhEEecCcchHHHHHHHHHHHcCCCCEEEE-cCcHHHHHHHHHHHHhCCCCC
Confidence 555443 10 1111111111 1223344566655555776554 555667788899999887643
No 165
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=96.68 E-value=0.097 Score=55.25 Aligned_cols=182 Identities=11% Similarity=0.053 Sum_probs=96.2
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
|||++...+. .+..+|++-++++ .+- .. ..+++.+.+.+ +|+....+.+.++..++++.|+--.+.+ +.
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~---~g~--~~-~~~~~~~~~a~-~d~~~~~~~~~~l~~~~~DlIi~~gt~a-a~ 72 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKE---LGY--DE-KNVEIEYKNAE-GDPEKLRQIARKLKAQKPDLIIAIGTPA-AQ 72 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHH---TT----C-CCEEEEEEE-T-T-HHHHHHHHHHHCCTS-SEEEEESHHH-HH
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHH---cCC--cc-ccEEEEEecCC-CCHHHHHHHHHHHhcCCCCEEEEeCcHH-HH
Confidence 6899988888 4455556555544 443 23 46888888855 8999988889888887888777554443 33
Q ss_pred HHHHHhccCCCceeeeccC-CCC--CCCCCCC--ccEEEEecChhhHHHHHHHHHHh-C-CCCEEEEEEecCCc--hhHH
Q psy16206 79 IIESMCQMFDIPHVEAFWD-PNK--YFIPTNG--VHGVNVYPESHLISKGISVIIND-M-DWDTFTIIYETHDN--LVYL 149 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~-~~~--~~~~~~~--~~~~r~~p~~~~~~~al~~~~~~-~-~w~~v~ii~~~~~~--~~~~ 149 (821)
++......- +|+|..+.+ |.. +...... +++.-+. +....+...++++. + +-++++++|+++.. ....
T Consensus 73 ~~~~~~~~~-iPVVf~~V~dp~~~~l~~~~~~~~~nvTGv~--~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~ 149 (294)
T PF04392_consen 73 ALAKHLKDD-IPVVFCGVSDPVGAGLVDSLDRPGKNVTGVS--ERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQI 149 (294)
T ss_dssp HHHHH-SS--S-EEEECES-TTTTTS-S-SSS--SSEEEEE--E---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHH
T ss_pred HHHHhcCCC-cEEEEEeccChhhhhccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHH
Confidence 343333332 999877543 321 1111111 2443333 22223444555555 3 57999999998752 3333
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM 203 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~ 203 (821)
+.+.+... ..|+.+....++. ..++...++.+. .+.+++++..+.
T Consensus 150 ~~~~~~a~-------~~g~~l~~~~v~~-~~~~~~~~~~l~-~~~da~~~~~~~ 194 (294)
T PF04392_consen 150 EQLRKAAK-------KLGIELVEIPVPS-SEDLEQALEALA-EKVDALYLLPDN 194 (294)
T ss_dssp HHHHHHHH-------HTT-EEEEEEESS-GGGHHHHHHHHC-TT-SEEEE-S-H
T ss_pred HHHHHHHH-------HcCCEEEEEecCc-HhHHHHHHHHhh-ccCCEEEEECCc
Confidence 33333333 3466666555544 677888888875 456788776654
No 166
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=96.68 E-value=0.22 Score=51.50 Aligned_cols=189 Identities=10% Similarity=-0.002 Sum_probs=103.6
Q ss_pred cEEEEeCCC-----c---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCC
Q psy16206 2 KIVGIFGPN-----E---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQ 72 (821)
Q Consensus 2 ~IG~i~~~~-----~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~ 72 (821)
.||+++|.. . ..+..+++.+.+ +. |+.+.+...+ .+ ....+.+.+++.. ++++||...
T Consensus 1 ~igvi~p~~~~~~~~~~~~~~~~~i~~~~~---~~------g~~~~~~~~~---~~-~~~~~~~~~~~~~~~vdgiii~~ 67 (268)
T cd06271 1 AIGLVLPTGEREEGDPFFAEFLSGLSEALA---EH------GYDLVLLPVD---PD-EDPLEVYRRLVESGLVDGVIISR 67 (268)
T ss_pred CeEEEeCCcccccCCccHHHHHHHHHHHHH---HC------CceEEEecCC---Cc-HHHHHHHHHHHHcCCCCEEEEec
Confidence 389999862 2 333444443333 23 3344444333 22 2334556677665 788888644
Q ss_pred CcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---h
Q psy16206 73 SIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---L 146 (821)
Q Consensus 73 ~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~ 146 (821)
+......+ ..+...++|+|....... ....++ ..+++...+..+++.+...|-++++++..... . .
T Consensus 68 ~~~~~~~~-~~~~~~~ipvV~~~~~~~----~~~~~~---V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~ 139 (268)
T cd06271 68 TRPDDPRV-ALLLERGFPFVTHGRTEL----GDPHPW---VDFDNEAAAYQAVRRLIALGHRRIALLNPPEDLTFAQHRR 139 (268)
T ss_pred CCCCChHH-HHHHhcCCCEEEECCcCC----CCCCCe---EeeCcHHHHHHHHHHHHHcCCCcEEEecCccccchHHHHH
Confidence 33222233 445678999998853322 112232 44666677788888888889999999975432 2 3
Q ss_pred hHHHHHHHhcCCCCCcCCCCCCeE---EEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 147 VYLQQVLENAHDDDKEIRPGRPSV---TIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~v---~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
..+++.+++.+ ..+ .......+.......++++.+. .+++|+. .+...+..+++++++.|+..+
T Consensus 140 ~gf~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vp 208 (268)
T cd06271 140 AGYRRALAEAG----------LPLDPALIVSGDMTEEGGYAAAAELLALPDRPTAIVC-SSELMALGVLAALAEAGLRPG 208 (268)
T ss_pred HHHHHHHHHhC----------CCCCCceEEeCCCChHHHHHHHHHHHhCCCCCCEEEE-cCcHHHHHHHHHHHHhCCCCC
Confidence 34444444443 221 1111111112233456565443 3565555 445667789999999998654
Q ss_pred c
Q psy16206 222 Y 222 (821)
Q Consensus 222 ~ 222 (821)
.
T Consensus 209 ~ 209 (268)
T cd06271 209 R 209 (268)
T ss_pred c
Confidence 3
No 167
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=96.67 E-value=0.25 Score=51.04 Aligned_cols=191 Identities=13% Similarity=0.068 Sum_probs=106.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.+... .....+++-|.++ . |+.+ .+.+.+ .++..-......++..++++||=.......
T Consensus 1 ~igvi~~~~~~~~~~~~~~~i~~~a~~---~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~~dgiii~~~~~~~ 68 (267)
T cd06283 1 LIGVIVADITNPFSSLVLKGIEDVCRA---H------GYQV--LVCNSD-NDPEKEKEYLESLLAYQVDGLIVNPTGNNK 68 (267)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHH---c------CCEE--EEEcCC-CCHHHHHHHHHHHHHcCcCEEEEeCCCCCh
Confidence 3788997644 4455555555543 2 2334 344423 566555566777887788877732222222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC-------chhHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD-------NLVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~-------~~~~~~ 150 (821)
..+ ..+...++|+|....... .. .+..+..++...+..+++.+...|-++++++..... ....+.
T Consensus 69 ~~l-~~~~~~~ipvV~~~~~~~----~~---~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~g~~ 140 (267)
T cd06283 69 ELY-QRLAKNGKPVVLVDRKIP----EL---GVDTVTLDNYEAAKEAVDHLIEKGYERILFVTEPLDEISPRMERYEGFK 140 (267)
T ss_pred HHH-HHHhcCCCCEEEEcCCCC----CC---CCCEEEeccHHHHHHHHHHHHHcCCCcEEEEecCccccccHHHHHHHHH
Confidence 334 345677999999854322 11 122345566667888888888889999999975432 122333
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ . ........... ...+....++++.++. +++|+. ++...+..+++.+++.|+..+
T Consensus 141 ~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~~l~~~g~~vp 205 (267)
T cd06283 141 EALAEHG-------I-GVNEELIEIDDEDADELDERLRQLLNKPKKKTAIFA-ANGLILLEVLKALKELGIRIP 205 (267)
T ss_pred HHHHHcC-------C-CCCcceeEecccchHHHHHHHHHHHcCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCc
Confidence 4443332 1 01111111111 1223445666665553 455554 445666778999999998644
No 168
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=96.63 E-value=0.35 Score=52.24 Aligned_cols=189 Identities=8% Similarity=-0.002 Sum_probs=105.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++++... ..+..+++-+.+ +. |+.+ .+.+++ .++....+....++.+++++||=-......
T Consensus 66 ~Igvv~~~~~~~~~~~i~~gi~~~a~---~~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 133 (342)
T PRK10014 66 VIGLIVRDLSAPFYAELTAGLTEALE---AQ------GRMV--FLLQGG-KDGEQLAQRFSTLLNQGVDGVVIAGAAGSS 133 (342)
T ss_pred EEEEEeCCCccchHHHHHHHHHHHHH---Hc------CCEE--EEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 5899987533 334445544433 33 2233 333423 455555566667777788888732222222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~~ 151 (821)
......+...++|+|....... ....+ .+.+++...+..+++.+...|.++++++..+.. -..++.+
T Consensus 134 ~~~~~~l~~~~iPvV~~~~~~~----~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~ 206 (342)
T PRK10014 134 DDLREMAEEKGIPVVFASRASY----LDDVD---TVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCA 206 (342)
T ss_pred HHHHHHHhhcCCCEEEEecCCC----CCCCC---EEEeCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccHHHHHHHHHH
Confidence 3344556778999998853222 11122 256666677788888888899999999965432 1234455
Q ss_pred HHHhcCCCCCcCCCCCCeEEE--E-EcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 152 VLENAHDDDKEIRPGRPSVTI--R-QLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~--~-~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
++++.+ ..+.. . ..+.........++++.+. .+++|+ +.+...+..+++.+.+.|+.-
T Consensus 207 al~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~~l~~~g~~v 269 (342)
T PRK10014 207 TLLKFG----------LPFHSEWVLECTSSQKQAAEAITALLRHNPTISAVV-CYNETIAMGAWFGLLRAGRQS 269 (342)
T ss_pred HHHHcC----------CCCCcceEecCCCChHHHHHHHHHHHcCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCC
Confidence 555543 22211 1 1111112233455555444 345555 455666778888898988754
No 169
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=96.63 E-value=0.21 Score=51.81 Aligned_cols=190 Identities=11% Similarity=-0.014 Sum_probs=106.5
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecC-CChhHHHHHHHHHhhcCeEEEEc-CCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVEN-YDSLHTAKLMCNATSEGIAAIFG-PQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~-~~~~~a~~~a~~li~~~V~aiiG-p~~s~ 75 (821)
|||++.+.-. ..+..+++.+.++. |+. +.+.+.+. .+...-.+....++.+++++||= |....
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~---------g~~--~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~ 69 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRL---------GVS--LKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPD 69 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHc---------CCE--EEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 6899998643 44555666555532 233 34444221 24455556777788888888863 33322
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCC-----CEEEEEEecCC---chh
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDW-----DTFTIIYETHD---NLV 147 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w-----~~v~ii~~~~~---~~~ 147 (821)
....+ ..+...++|+|........ ....-.+..++...++.+++++...+- ++++++....+ ...
T Consensus 70 ~~~~~-~~~~~~giPvV~~~~~~~~------~~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~~i~~l~g~~~~~~~~~ 142 (268)
T cd06306 70 GLNEI-LQQVAASIPVIALVNDINS------PDITAKVGVSWYEMGYQAGEYLAQRHPKGSKPAKVAWFPGPKGAGWVKA 142 (268)
T ss_pred hHHHH-HHHHHCCCCEEEeccCCCC------cceeEEecCChHHHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCchHHH
Confidence 22223 3456789999987432221 112234666777778888888877665 89999975433 223
Q ss_pred HHHHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 148 YLQQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
+.+.+.+... ..++.+....... +.......++++.+. .+++|+. ....+..+++.+++.|+
T Consensus 143 R~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~--~d~~a~~~~~~l~~~g~ 207 (268)
T cd06306 143 VEKGFRDALA-------GSAIEISAIKYGDTGKEVQRKLVEEALEAHPDIDYIVG--SAVAAEAAVGILRQRGL 207 (268)
T ss_pred HHHHHHHHHh-------hcCcEEeeeccCCccHHHHHHHHHHHHHhCCCcCEEee--cchhhhHHHHHHHhcCC
Confidence 3333333333 2234432211111 112233455555433 4566663 36667788999999887
No 170
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=96.58 E-value=0.36 Score=51.17 Aligned_cols=199 Identities=10% Similarity=-0.045 Sum_probs=109.0
Q ss_pred cEEEEeCCC-c----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEc-CCC
Q psy16206 2 KIVGIFGPN-E----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFG-PQS 73 (821)
Q Consensus 2 ~IG~i~~~~-~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiG-p~~ 73 (821)
.||+++|.. . ..+..+++.+.++ . |+.+. +.+++ .++..-......++.+ +|++||= |..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~~gi~~~~~~---~------g~~v~--~~~~~-~~~~~~~~~i~~~~~~~~~vdgiIi~~~~ 68 (305)
T cd06324 1 SVVFLNPGKSDEPFWNSVARFMQAAADD---L------GIELE--VLYAE-RDRFLMLQQARTILQRPDKPDALIFTNEK 68 (305)
T ss_pred CeEEecCCCCCCcHHHHHHHHHHHHHHh---c------CCeEE--EEeCC-CCHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 388899875 4 3344455554433 2 33443 34433 5777777788889998 9998773 333
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCC------CCCC-CccEEEEecChhhHHHHHHHHHHhCCCCE--------EEE
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYF------IPTN-GVHGVNVYPESHLISKGISVIINDMDWDT--------FTI 138 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~------~~~~-~~~~~r~~p~~~~~~~al~~~~~~~~w~~--------v~i 138 (821)
. ........+...++|+|.......... .+.. ..++-...+++...++.+++.+...|.++ +++
T Consensus 69 ~-~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~g~~~i~~ 147 (305)
T cd06324 69 S-VAPELLRLAEGAGVKLFLVNSGLTEAQARELGPPREKFPDWLGQLLPNDEEAGYLMAEALISQARSVQAPGGRIDLLA 147 (305)
T ss_pred c-chHHHHHHHHhCCCeEEEEecCCCcchhhcccccccccCceeeeeccCcHHHHHHHHHHHHHHhhcccCCCCceeEEE
Confidence 2 233334556678999998854322100 0011 12345577787788888888888777664 666
Q ss_pred EEecCC---chhHHHHHHHhcCCCCCcCCCCC-CeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHH
Q psy16206 139 IYETHD---NLVYLQQVLENAHDDDKEIRPGR-PSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILK 211 (821)
Q Consensus 139 i~~~~~---~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~ 211 (821)
+..... ...+.+.+.+... .+| ..+....... ...+....++++.+. .++.|+ +.....+..+++
T Consensus 148 i~~~~~~~~~~~R~~Gf~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~ 219 (305)
T cd06324 148 ISGDPTTPAAILREAGLRRALA-------EHPDVRLRQVVYAGWSEDEAYEQAENLLKRYPDVRLIW-AANDQMAFGALR 219 (305)
T ss_pred EeCCCCChHHHHHHHHHHHHHH-------HCCCceEeeeecCCCCHHHHHHHHHHHHHHCCCccEEE-ECCchHHHHHHH
Confidence 654322 1223333333332 222 2222111111 112233455555443 355554 455666778999
Q ss_pred HHHHccccCc
Q psy16206 212 QAKEVHLMGD 221 (821)
Q Consensus 212 ~a~~~g~~~~ 221 (821)
++++.|+.-+
T Consensus 220 al~~~g~~vp 229 (305)
T cd06324 220 AAKEAGRKPG 229 (305)
T ss_pred HHHHcCCCcC
Confidence 9999998643
No 171
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.56 E-value=0.21 Score=51.51 Aligned_cols=188 Identities=10% Similarity=0.042 Sum_probs=104.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
.||+++|... ..+..+++.+.++ . |+++. +.+.+ .++..-.+....+..+++++|| .|.....
T Consensus 1 ~Ig~i~p~~~~~~~~~~~~~i~~~~~~---~------g~~~~--~~~~~-~~~~~~~~~i~~l~~~~~dgiii~~~~~~~ 68 (263)
T cd06280 1 TVGLIVADIRNPFFTAVSRAVEDAAYR---A------GLRVI--LCNTD-EDPEKEAMYLELMEEERVTGVIFAPTRATL 68 (263)
T ss_pred CEEEEecccccccHHHHHHHHHHHHHH---C------CCEEE--EEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 4899998755 4455555555544 2 33553 44422 4565545556666666777666 3432222
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC--c---hhHHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD--N---LVYLQQ 151 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~--~---~~~~~~ 151 (821)
. ... ....++|+|....... ....++ ...++...+..+++.+...|-++++++..+.. . ..++++
T Consensus 69 ~--~~~-~~~~~iPvV~~~~~~~----~~~~~~---v~~d~~~~g~~a~~~L~~~g~~~i~~~~~~~~~~~~~R~~gf~~ 138 (263)
T cd06280 69 R--RLA-ELRLSFPVVLIDRAGP----AGRVDA---VVLDNRAAARTLVEHLVAQGYRRIGGLFGNASTTGAERRAGYED 138 (263)
T ss_pred h--HHH-HHhcCCCEEEECCCCC----CCCCCE---EEECcHHHHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 2 222 3466899998854322 112232 34566677788888888889999999876432 1 334444
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
.+++.+ .............+-...++++... .+++|+ +.+...+..+++.+++.|+.-+.
T Consensus 139 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~~p~ 200 (263)
T cd06280 139 AMRRHG----------LAPDARFVAPTAEAAEAALAAWLAAPERPEALV-ASNGLLLLGALRAVRAAGLRIPQ 200 (263)
T ss_pred HHHHcC----------CCCChhhcccCHHHHHHHHHHHhcCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCC
Confidence 444443 2211111112122223344454433 355544 45566677899999999986443
No 172
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.56 E-value=0.35 Score=49.89 Aligned_cols=195 Identities=8% Similarity=-0.089 Sum_probs=102.5
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIE 81 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~ 81 (821)
.||++++.........+..++++.-++. |+.+.+ .+++ .++..-.+....+..++++++|=-.+......+.
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~-----gy~~~~--~~~~-~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~ 72 (265)
T cd06290 1 TIGVLTQDFASPFYGRILKGMERGLNGS-----GYSPII--ATGH-WNQSRELEALELLKSRRVDALILLGGDLPEEEIL 72 (265)
T ss_pred CEEEEECCCCCchHHHHHHHHHHHHHHC-----CCEEEE--EeCC-CCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHH
Confidence 4899998544222333333333332221 334433 4423 5665555666677777888887322222222233
Q ss_pred HHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---chhHHHHHHHhcCC
Q psy16206 82 SMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---NLVYLQQVLENAHD 158 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~~~~~~~~~~~~~~ 158 (821)
.+ . .++|+|....... .... -.+..++...+..+++.+...|-++++++..+.. ...+.+.+.+...
T Consensus 73 ~~-~-~~iPvV~i~~~~~----~~~~---~~V~~d~~~a~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~- 142 (265)
T cd06290 73 AL-A-EEIPVLAVGRRVP----GPGA---ASIAVDNFQGGYLATQHLIDLGHRRIAHITGPRGHIDARDRLAGYRKALE- 142 (265)
T ss_pred HH-h-cCCCEEEECCCcC----CCCC---CEEEECcHHHHHHHHHHHHHCCCCeEEEEeCccccchhhHHHHHHHHHHH-
Confidence 33 2 4899998864322 1112 2355677777788888887789999999875432 1223333333332
Q ss_pred CCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 159 DDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 159 ~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
..+..+. ......+.......++++.+.+ +++|+ +++...+..+++.+++.|+.-+
T Consensus 143 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aii-~~~~~~a~~~~~~l~~~g~~ip 203 (265)
T cd06290 143 ------EAGLEVQPDLIVQGDFEEESGLEAVEELLQRGPDFTAIF-AANDQTAYGARLALYRRGLRVP 203 (265)
T ss_pred ------HcCCCCCHHHEEecCCCHHHHHHHHHHHHcCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCC
Confidence 1122221 1111111122334566665443 46555 4556667788999999997543
No 173
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=96.55 E-value=0.32 Score=52.18 Aligned_cols=189 Identities=10% Similarity=-0.013 Sum_probs=103.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
.||++++... ..+..+++.+.++ . |+.+.+ ..++ .++....+....++..++++||= |.....
T Consensus 63 ~Igvv~~~~~~~~~~~l~~gi~~~~~~---~------g~~~~~--~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 130 (328)
T PRK11303 63 SIGLIIPDLENTSYARIAKYLERQARQ---R------GYQLLI--ACSD-DQPDNEMRCAEHLLQRQVDALIVSTSLPPE 130 (328)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHHH---c------CCEEEE--EeCC-CCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 4888887433 3344444444432 2 334443 3322 45555555666677778888774 322222
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQ 150 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~ 150 (821)
...+.. +...++|+|....... ....+ ...+++...+..+++.+...|.++++++..... . ..++.
T Consensus 131 ~~~~~~-l~~~~iPvV~v~~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~R~~Gf~ 202 (328)
T PRK11303 131 HPFYQR-LQNDGLPIIALDRALD----REHFT---SVVSDDQDDAEMLAESLLKFPAESILLLGALPELSVSFEREQGFR 202 (328)
T ss_pred hHHHHH-HHhcCCCEEEECCCCC----CCCCC---EEEeCCHHHHHHHHHHHHHCCCCeEEEEeCccccccHHHHHHHHH
Confidence 233333 4467899998753221 11122 345666667777888888889999999975432 2 33444
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEEEcC-CCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIRQLP-PDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~~~~-~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ ..+...... .+..+-...++++.+. .+++|+.. +...+..+++++.+.|+.-+
T Consensus 203 ~al~~~g----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~A~g~~~al~~~g~~vP 265 (328)
T PRK11303 203 QALKDDP----------REVHYLYANSFEREAGAQLFEKWLETHPMPDALFTT-SYTLLQGVLDVLLERPGELP 265 (328)
T ss_pred HHHHHcC----------CCceEEEeCCCChHHHHHHHHHHHcCCCCCCEEEEc-CcHHHHHHHHHHHHcCCCCC
Confidence 5555444 322221111 1122233455555544 45666544 45567778899999998544
No 174
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=96.54 E-value=0.45 Score=49.85 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=104.3
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
+||++.+... ..+.++++.+.++ . |++ +.+.+.+ ++..-.+...+++..++++||= |..+..
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~---~------g~~--~~~~~~~--~~~~~~~~i~~~~~~~~dgiii~~~~~~~ 67 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKE---K------GFT--VVKIDVP--DGEKVLSAIDNLGAQGAKGFVICVPDVKL 67 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHH---c------CCE--EEEccCC--CHHHHHHHHHHHHHcCCCEEEEccCchhh
Confidence 6899998543 3444555555544 2 234 3445523 5555555666677778887774 332333
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHH----hCCC--CEEEEEEe-c-CC--ch
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIN----DMDW--DTFTIIYE-T-HD--NL 146 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~----~~~w--~~v~ii~~-~-~~--~~ 146 (821)
...+...+...++|+|........ .+....+.+-.+..+....+..+++.+. ..|+ ++++++.. . +. ..
T Consensus 68 ~~~~~~~~~~~~iPvV~~~~~~~~-~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~g~~~~~i~~i~~~~~~~~~~~ 146 (289)
T cd01540 68 GPAIVAKAKAYNMKVVAVDDRLVD-ADGKPMEDVPHVGMSATKIGEQVGEAIADEMKKRGWDPKEVGALRITYDELDTAK 146 (289)
T ss_pred hHHHHHHHHhCCCeEEEecCCCcc-cCCCccccceEecCCHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCcchh
Confidence 444455677899999988543221 0000112223355566666666655544 3577 78887752 2 21 22
Q ss_pred hHHHHHHHhcCCCCCcCCCCCCeEE-EEEcCCC---CCChHHHHHHhhcCC--CcE-EEEeCChhHHHHHHHHHHHcccc
Q psy16206 147 VYLQQVLENAHDDDKEIRPGRPSVT-IRQLPPD---TDDYRPLLKEIKNSS--ESH-ILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~v~-~~~~~~~---~~d~~~~l~~lk~~~--~~~-ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
.+.+.+.+... ..|.... ....+.. ...-...++++..+. ++. .++......+..+++++.+.|+.
T Consensus 147 ~R~~G~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~d~~a~g~~~al~~~g~~ 219 (289)
T cd01540 147 PRTDGALEALK-------APGFPEANIFQAPQKTTDTEGAFDAAASTLTKNPNVKNWIIYGLNDETVLGAVRATEQSGIA 219 (289)
T ss_pred hHHHHHHHHHh-------cCCCCcceEecccccCcchhhHHHHHHHHHHhCCCcCeeEEEeCCcHHHHHHHHHHHHcCCC
Confidence 33333333332 2222211 1111111 112234455555443 343 45556666788899999999987
Q ss_pred Ccce
Q psy16206 220 GDYQ 223 (821)
Q Consensus 220 ~~~~ 223 (821)
..+.
T Consensus 220 ~~di 223 (289)
T cd01540 220 AADV 223 (289)
T ss_pred Ccce
Confidence 4343
No 175
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.50 E-value=0.35 Score=50.18 Aligned_cols=193 Identities=9% Similarity=-0.011 Sum_probs=107.7
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcc-
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIE- 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~- 75 (821)
.||++.|... ..+..+++-+.++ . |+.+ .+.+++ .++..-.+....|+.++|+++|= |....
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 68 (273)
T cd06292 1 LVGLLVPELSNPIFPAFAEAIEAALAQ---Y------GYTV--LLCNTY-RGGVSEADYVEDLLARGVRGVVFISSLHAD 68 (273)
T ss_pred CEEEEeCCCcCchHHHHHHHHHHHHHH---C------CCEE--EEEeCC-CChHHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 3899998655 3344444444443 2 3344 344423 56666667778888888888773 32211
Q ss_pred ---hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---chhHH
Q psy16206 76 ---NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---NLVYL 149 (821)
Q Consensus 76 ---~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~~~~~ 149 (821)
....+ ..+...++|+|........ ... +-.+..++...+..+++.+...|-++++++....+ ...+.
T Consensus 69 ~~~~~~~i-~~~~~~~ipvV~i~~~~~~---~~~---~~~V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~ 141 (273)
T cd06292 69 THADHSHY-ERLAERGLPVVLVNGRAPP---PLK---VPHVSTDDALAMRLAVRHLVALGHRRIGFASGPGRTVPRRRKI 141 (273)
T ss_pred ccchhHHH-HHHHhCCCCEEEEcCCCCC---CCC---CCEEEECcHHHHHHHHHHHHHCCCceEEEEeCCcccccHHHHH
Confidence 12223 3346789999998643221 111 22366677778888888888889999998875432 22333
Q ss_pred HHHHHhcCCCCCcCCCCCCeE---EEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSV---TIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v---~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+.+... .++... ...............++++....+++|+ .++...+..+++.+.+.|+.-+
T Consensus 142 ~gf~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~a~g~~~~l~~~g~~ip 208 (273)
T cd06292 142 AGFRAALE-------EAGLEPPEALVARGMFSVEGGQAAAVELLGSGPTAIV-AASDLMALGAIRAARRRGLRVP 208 (273)
T ss_pred HHHHHHHH-------HcCCCCChhheEeCCCCHHHHHHHHHHHhcCCCCEEE-EcCcHHHHHHHHHHHHcCCCCC
Confidence 33333332 222211 1111111122234455555544577655 4455666778899999987543
No 176
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=96.46 E-value=0.59 Score=48.75 Aligned_cols=195 Identities=9% Similarity=-0.020 Sum_probs=104.5
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
+||++.|... ..+..+++.+.++ . |+ ++.+.+. ..++..-.+....++.+++++|| .|..+..
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~---~------g~--~v~~~~~-~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~ 68 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKA---L------GY--ELISTDA-QGDLTKQIADVEDLLTRGVNVLIINPVDPEG 68 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHH---c------CC--EEEEEcC-CCCHHHHHHHHHHHHHcCCCEEEEecCCccc
Confidence 6899998644 3344444444443 2 22 3444553 35776666777778888888777 3433332
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-CCCC--EEEEEEecCC---c---hh
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-MDWD--TFTIIYETHD---N---LV 147 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~~w~--~v~ii~~~~~---~---~~ 147 (821)
.......+...++|+|....... ...+.+..+..++...++.+++.+.. .|-+ +++++..+.. . ..
T Consensus 69 ~~~~i~~~~~~~iPvV~~~~~~~-----~~~~~~~~v~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~ 143 (282)
T cd06318 69 LVPAVAAAKAAGVPVVVVDSSIN-----LEAGVVTQVQSSNAKNGNLVGEWVVGELGDKPMKIILLSGDAGNLVGQARRD 143 (282)
T ss_pred hHHHHHHHHHCCCCEEEecCCCC-----CCcCeEEEEecCcHHHHHHHHHHHHHHhCCCCceEEEEECCCCCchHhHHHH
Confidence 22233445678999998854211 10123445667777778888888866 6765 8888865322 2 23
Q ss_pred HHHHHHHhcCCCCCcCCCC---CCeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 148 YLQQVLENAHDDDKEIRPG---RPSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~---g~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
.+++.+++.+ +... +..+....... ...+-...+.++... .+++|+ ......+..+++++++.|+.
T Consensus 144 gf~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 215 (282)
T cd06318 144 GFLLGVSEAQ-----LRKYGKTNFTIVAQGYGDWTREGGLKAMEDLLVAHPDINVVY-SENDDMALGAMRVLAEAGKT 215 (282)
T ss_pred hHHHHHhhCc-----ccccccCCeEEEecCCCCCCHHHHHHHHHHHHHhCCCcCEEE-ECCcchHHHHHHHHHHcCCC
Confidence 3344444432 0000 11121111111 111222344444333 345454 34455667789999999985
No 177
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=96.45 E-value=0.41 Score=51.77 Aligned_cols=191 Identities=12% Similarity=0.036 Sum_probs=103.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEec-CCChhHHHHHHHHHhhcCeEEEE-cCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVE-NYDSLHTAKLMCNATSEGIAAIF-GPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~-~~~~~~a~~~a~~li~~~V~aii-Gp~~s~ 75 (821)
+||++.+... .....+++-+.++ . | +++.+.+++ ..+...-.+....++.++|++|| .|....
T Consensus 48 ~Igvv~p~~~~~f~~~~~~gi~~aa~~---~------G--~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~ 116 (343)
T PRK10936 48 KLCALYPHLKDSYWLSVNYGMVEEAKR---L------G--VDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTPD 116 (343)
T ss_pred EEEEEecCCCchHHHHHHHHHHHHHHH---h------C--CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChH
Confidence 6899998754 3344455544443 2 2 344444432 13444445667778888888887 454433
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC-----CCCEEEEEEecCC---chh
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM-----DWDTFTIIYETHD---NLV 147 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~-----~w~~v~ii~~~~~---~~~ 147 (821)
...... .+...++|+|....... +. .....+.+++...++..++.+... |-++++++..+.. ...
T Consensus 117 ~~~~~l-~~~~~giPvV~~~~~~~----~~--~~~~~V~~D~~~~g~~aa~~L~~~~~~~~g~~~i~~i~g~~~~~~~~~ 189 (343)
T PRK10936 117 GLNPDL-ELQAANIPVIALVNGID----SP--QVTTRVGVSWYQMGYQAGRYLAQWHPKGSKPLNVALLPGPEGAGGSKA 189 (343)
T ss_pred HhHHHH-HHHHCCCCEEEecCCCC----Cc--cceEEEecChHHHHHHHHHHHHHHHHhcCCCceEEEEECCCCCchHHH
Confidence 322222 45678999997742211 11 112345677777778788877665 4789998875432 122
Q ss_pred HHHHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 148 YLQQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.+.+.+... ..++.+....... +...-...++++.+. .++.|+ +....+..+++.+++.|+.
T Consensus 190 R~~Gf~~~l~-------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~--~~d~~A~ga~~al~~~g~~ 255 (343)
T PRK10936 190 VEQGFRAAIA-------GSDVRIVDIAYGDNDKELQRNLLQELLERHPDIDYIA--GSAVAAEAAIGELRGRNLT 255 (343)
T ss_pred HHHHHHHHHh-------cCCCEEEEeecCCCcHHHHHHHHHHHHHhCCCccEEE--eCCHHHHHHHHHHHhcCCC
Confidence 3333333332 2244443222211 112223445555433 367775 3456677788888888873
No 178
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=96.43 E-value=0.43 Score=49.63 Aligned_cols=149 Identities=8% Similarity=-0.070 Sum_probs=82.5
Q ss_pred HHHHHHhh-cCeEEEEc-CCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCC
Q psy16206 55 KLMCNATS-EGIAAIFG-PQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMD 132 (821)
Q Consensus 55 ~~a~~li~-~~V~aiiG-p~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~ 132 (821)
+.+.+++. +++++||- |.... ... ...+...++|+|....... . ..+..+.+++...++.+++.+...|
T Consensus 54 ~~~~~~l~~~~~dgiii~~~~~~-~~~-~~~~~~~~ipvV~~~~~~~----~---~~~~~V~~d~~~~g~~~a~~l~~~g 124 (275)
T cd06295 54 DWLARYLASGRADGVILIGQHDQ-DPL-PERLAETGLPFVVWGRPLP----G---QPYCYVGSDNVGGGRLATEHLLARG 124 (275)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCC-hHH-HHHHHhCCCCEEEECCccC----C---CCCCEEEECcHHHHHHHHHHHHHCC
Confidence 34445554 48887763 32222 222 3445778999998854321 1 2234466777778888999888899
Q ss_pred CCEEEEEEecCC---c---hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChh
Q psy16206 133 WDTFTIIYETHD---N---LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMD 204 (821)
Q Consensus 133 w~~v~ii~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~ 204 (821)
.++++++..+.. . ...+.+.+++.+ ................+....+.++.+. .++.|+.. ...
T Consensus 125 ~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~~~ 196 (275)
T cd06295 125 RRRIAFLGGPQDMPEGEERLEGYREALAEAG-------LPLDPRLVAPGDFTEESGRAAMRALLERGPDFDAVFAA-SDL 196 (275)
T ss_pred CCeEEEEcCCCCcchhHHHHHHHHHHHHHcC-------CCCChhhEEeccCCHHHHHHHHHHHHhCCCCCCEEEEC-CcH
Confidence 999999976443 1 333444444432 1000011111111122233445554444 34655544 456
Q ss_pred HHHHHHHHHHHccccC
Q psy16206 205 KTVTILKQAKEVHLMG 220 (821)
Q Consensus 205 ~~~~~l~~a~~~g~~~ 220 (821)
.+..+++.+++.|+.-
T Consensus 197 ~a~g~~~~l~~~g~~i 212 (275)
T cd06295 197 MALGALRALREAGRRV 212 (275)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 6677888888999853
No 179
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=96.38 E-value=0.35 Score=49.90 Aligned_cols=187 Identities=15% Similarity=0.060 Sum_probs=102.4
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcchHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIENRNII 80 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~~~~v 80 (821)
.||++.+.-.......+..++++.-+.. |+++ .+.+++ .++..-.+....+..+++++|| .|.... .
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~-~~~~~~~~~i~~~~~~~~dgiii~~~~~~-~--- 68 (265)
T cd06291 1 LIGLIVPTISNPFFSELARAVEKELYKK-----GYKL--ILCNSD-NDPEKEREYLEMLRQNQVDGIIAGTHNLG-I--- 68 (265)
T ss_pred CEEEEECCCCChhHHHHHHHHHHHHHHC-----CCeE--EEecCC-ccHHHHHHHHHHHHHcCCCEEEEecCCcC-H---
Confidence 4888998544222233333333333332 2343 344433 4665555666677777888777 333222 1
Q ss_pred HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC----c---hhHHHHHH
Q psy16206 81 ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD----N---LVYLQQVL 153 (821)
Q Consensus 81 ~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~----~---~~~~~~~~ 153 (821)
. .+...++|+|....... ... -.+.+++...++.+++.+...|.++++++..... . ..++.+.+
T Consensus 69 ~-~~~~~gipvv~~~~~~~-----~~~---~~V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l 139 (265)
T cd06291 69 E-EYENIDLPIVSFDRYLS-----ENI---PIVSSDNYEGGRLAAEELIERGCKHIAHIGGPNNTVSPTNLRYEGFLDVL 139 (265)
T ss_pred H-HHhcCCCCEEEEeCCCC-----CCC---CeEeechHHHHHHHHHHHHHcCCcEEEEEccCcccccchHHHHHHHHHHH
Confidence 2 33567899998864322 111 2356666667788888888889999999865332 1 33445555
Q ss_pred HhcCCCCCcCCCCCCeEEEE--EcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 154 ENAHDDDKEIRPGRPSVTIR--QLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~~--~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
++.+ ..+... .......+....++++.+.. +++|+. ++...+..+++++.+.|+.-
T Consensus 140 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~~~~~al~~~g~~v 199 (265)
T cd06291 140 KENG----------LEVRIIEIQENFDDAEKKEEIKELLEEYPDIDGIFA-SNDLTAILVLKEAQQRGIRV 199 (265)
T ss_pred HHcC----------CCCChheeeccccchHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCC
Confidence 4443 222111 11111112344555554443 455443 44556778899999999753
No 180
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.38 E-value=0.35 Score=49.97 Aligned_cols=188 Identities=9% Similarity=0.020 Sum_probs=104.5
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
.||+++|... ..+..++.-+.++ . |+++ .+...+ .++..-.+....+...++++|| .|... .
T Consensus 1 ~igvi~p~~~~~~~~~~~~gi~~~~~~---~------~~~~--~~~~~~-~~~~~~~~~i~~l~~~~~dgiii~~~~~-~ 67 (265)
T cd06285 1 TIGVLVPRLTDTVMATMYEGIEEAAAE---R------GYST--FVANTG-DNPDAQRRAIEMLLDRRVDGLILGDARS-D 67 (265)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHHHH---C------CCEE--EEEeCC-CCHHHHHHHHHHHHHcCCCEEEEecCCC-C
Confidence 4899998644 3344444444333 2 3344 334423 5666655666677777888777 44332 2
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---chhHHHHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---NLVYLQQVL 153 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~~~~~~~~~ 153 (821)
...+ ..+...++|++....... ..+ .+..++..-+..+++.+...|-++++++..+.. ...+.+.+.
T Consensus 68 ~~~~-~~~~~~~iPvv~~~~~~~------~~~---~V~~d~~~ag~~a~~~L~~~g~~~i~~i~~~~~~~~~~~R~~Gf~ 137 (265)
T cd06285 68 DHFL-DELTRRGVPFVLVLRHAG------TSP---AVTGDDVLGGRLATRHLLDLGHRRIAVLAGPDYASTARDRLAGFR 137 (265)
T ss_pred hHHH-HHHHHcCCCEEEEccCCC------CCC---EEEeCcHHHHHHHHHHHHHCCCccEEEEeCCcccccHHHHHHHHH
Confidence 3333 345668999998853211 122 245566667778888888889999999976442 223333333
Q ss_pred HhcCCCCCcCCCCCCeEEE---EEcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 154 ENAHDDDKEIRPGRPSVTI---RQLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~---~~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
+... ..|..+.. .....+.......++++.+.. ++.|+ +++...+..+++.+++.|+.-
T Consensus 138 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~~ 201 (265)
T cd06285 138 AALA-------EAGIEVPPERIVYSGFDIEGGEAAAEKLLRSDSPPTAIF-AVNDFAAIGVMGAARDRGLRV 201 (265)
T ss_pred HHHH-------HcCCCCChhhEEeCCCCHHHHHHHHHHHHcCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCC
Confidence 3332 22332211 111111122234555554443 45444 445666778999999999853
No 181
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.81 Score=48.93 Aligned_cols=200 Identities=11% Similarity=0.075 Sum_probs=122.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcchHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIENRNII 80 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~~~~v 80 (821)
+||.+.+..+.....++.-++++--+.-+ . ...+...| ...|+..-.+.+.+++.+|+++|+ .|..+.....+
T Consensus 35 ~i~~~~~~~~~~f~~~~~~g~~~~a~~~g----~-~~~~~~~~-~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~ 108 (322)
T COG1879 35 TIGVVVPTLGNPFFQAVRKGAEAAAKKLG----V-VVAVVIAD-AQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPA 108 (322)
T ss_pred eEEEEeccCCChHHHHHHHHHHHHHHHcC----C-cEEEEecc-cccChHHHHHHHHHHHHcCCCEEEEcCCChhhhHHH
Confidence 68888888875555556655655555533 1 45556666 447888888889999988998876 88888888888
Q ss_pred HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-CCC-CEEEEEEecCC------chhHHHHH
Q psy16206 81 ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-MDW-DTFTIIYETHD------NLVYLQQV 152 (821)
Q Consensus 81 ~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~~w-~~v~ii~~~~~------~~~~~~~~ 152 (821)
..-+...+||+|.+...... . ......+..+....++..++.+.. ++- -++.++..... ....+++.
T Consensus 109 v~~a~~aGIpVv~~d~~~~~---~--~~~~~~vg~dn~~~G~~~a~~l~~~~~~~g~v~~~~g~~~~~~~~~R~~G~~~~ 183 (322)
T COG1879 109 VKKAKAAGIPVVTVDSDIPG---P--GDRVAYVGSDNYKAGRLAAEYLAKALGGKGKVVVLVGSPGNSSAEERVKGFRDA 183 (322)
T ss_pred HHHHHHCCCcEEEEecCCCC---C--CceeEEEecCcHHHHHHHHHHHHHHhCCCCeEEEEecCCCCchHHHHHhhHHHH
Confidence 88899999999999655442 1 233444444666666776776654 432 34566554432 24445555
Q ss_pred HHhcCCCCCcCCCCCCeEEEEEcCCC-CCChHHHHHHhhcCCCcEEEEeCC-hhHHHHHHHHHHHccccC
Q psy16206 153 LENAHDDDKEIRPGRPSVTIRQLPPD-TDDYRPLLKEIKNSSESHILLDCS-MDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~~~~~~~-~~d~~~~l~~lk~~~~~~ivl~~~-~~~~~~~l~~a~~~g~~~ 220 (821)
+++.. .. ..+........ .+.-...++.+..+.+++-.+.+. ...+.-..+++++.|..+
T Consensus 184 l~~~~-------~~-~~v~~~~~~~~~~~~a~~~~~~~L~~~pdi~~i~~~~d~~a~ga~~A~~~~g~~~ 245 (322)
T COG1879 184 LKEHP-------PD-IEVVDVQTGDWDRDKALEVMEDLLAANPDIDGIYAANDGMALGAIQALKAAGRKG 245 (322)
T ss_pred HHhCC-------Cc-EEEeeccCCcccHHHHHHHHHHHHHhCCCceEEEECCchhHHHHHHHHHHcCCCC
Confidence 55554 11 22222222111 233444566666677776544444 455555667777778765
No 182
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=96.35 E-value=0.61 Score=49.96 Aligned_cols=189 Identities=11% Similarity=0.072 Sum_probs=101.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
.||++++... ..+..+++-+.++ . |+.+ .+.+++ .++..-.+....+..++|++||= |.....
T Consensus 58 ~Igvi~~~~~~~~~~~~~~gi~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~ 125 (327)
T PRK10423 58 TIGMLITASTNPFYSELVRGVERSCFE---R------GYSL--VLCNTE-GDEQRMNRNLETLMQKRVDGLLLLCTETHQ 125 (327)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHH---c------CCEE--EEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 4899988644 3344455444443 2 3344 344423 56666556666777778887772 322211
Q ss_pred HHHHHHHhcc-CCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHH
Q psy16206 77 RNIIESMCQM-FDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYL 149 (821)
Q Consensus 77 ~~~v~~i~~~-~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~ 149 (821)
... ..... .++|+|.....+. .. ... ....++..-+..+++.+...|.++++++..+.. . ..++
T Consensus 126 -~~~-~~l~~~~~iPvV~i~~~~~----~~-~~~--~v~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 196 (327)
T PRK10423 126 -PSR-EIMQRYPSVPTVMMDWAPF----DG-DSD--LIQDNSLLGGDLATQYLIDKGYTRIACITGPLDKTPARLRLEGY 196 (327)
T ss_pred -hhH-HHHHhcCCCCEEEECCccC----CC-CCC--EEEEChHHHHHHHHHHHHHcCCCeEEEEeCCccccchHHHHHHH
Confidence 111 12233 4899998853221 11 111 244454455778888888899999999865332 2 3344
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
.+.+++.+ +.+... .+..+ ...-...++++.+. .++.|+ +++...+..+++++.+.|+.-+.
T Consensus 197 ~~al~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~~l~~~g~~vP~ 263 (327)
T PRK10423 197 RAAMKRAG----------LNIPDGYEVTGDFEFNGGFDAMQQLLALPLRPQAVF-TGNDAMAVGVYQALYQAGLSVPQ 263 (327)
T ss_pred HHHHHHcC----------CCCCcceEEeCCCChHHHHHHHHHHhcCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCC
Confidence 45554443 222110 11111 11223445555444 355554 45566677899999999986443
No 183
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.24 E-value=0.21 Score=51.80 Aligned_cols=189 Identities=10% Similarity=0.012 Sum_probs=105.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++++... .....+++.+.++ . | .++.+.+++ .++....+....+...+|++||--.+....
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~---~------g--~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgii~~~~~~~~ 68 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRA---A------G--YSLLIANSL-NDPERELEILRSFEQRRMDGIIIAPGDERD 68 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHH---c------C--CEEEEEeCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCc
Confidence 4899998544 4455566555544 2 2 334555533 566666666667777788888843332223
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~ 151 (821)
..+...+...++|+|........ ..+ ....++..-+..+++.+...|-++++++..... . ...+.+
T Consensus 69 ~~~~~~~~~~~ipvV~i~~~~~~-----~~~---~V~~d~~~~g~~a~~~l~~~G~~~i~~l~~~~~~~~~~~R~~Gf~~ 140 (269)
T cd06281 69 PELVDALASLDLPIVLLDRDMGG-----GAD---AVLFDHAAGMRQAVEYLISLGHRRIALVGGGSNTRPGRERLEGYKA 140 (269)
T ss_pred HHHHHHHHhCCCCEEEEecccCC-----CCC---EEEECcHHHHHHHHHHHHHCCCcEEEEecCccccccHHHHHHHHHH
Confidence 44455667789999988533211 112 244555555566777777789999999865432 2 234444
Q ss_pred HHHhcCCCCCcCCCCCCeEEE-EEcCCC-CCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTI-RQLPPD-TDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~-~~~~~~-~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+ ..+.. ..+..+ ...-...+.++.++ .+++|+ +.+...+..+++++.+.|+.-+
T Consensus 141 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~ip 203 (269)
T cd06281 141 AFAAAG----------LPPDPALVRLSTPAASGFDATRALLALPDRPTAII-AGGTQVLVGVLRALREAGLRIP 203 (269)
T ss_pred HHHHcC----------CCCCHHHeecCcHHHHHHHHHHHHHcCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCC
Confidence 444443 22210 011111 11122344454433 467766 3455566678999999998643
No 184
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=96.24 E-value=0.35 Score=51.81 Aligned_cols=188 Identities=12% Similarity=0.045 Sum_probs=102.7
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
.||++++.-. ..+..+++-+.+ +. |+.+. +.+++ .++..-.+....+..++|++|| -|.....
T Consensus 62 ~Igvi~~~~~~~~~~~~~~~i~~~~~---~~------gy~~~--i~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 129 (327)
T TIGR02417 62 TIGLVIPDLENYSYARIAKELEQQCR---EA------GYQLL--IACSD-DNPDQEKVVIENLLARQVDALIVASCMPPE 129 (327)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHH---HC------CCEEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 5899987433 333344443332 22 33443 44423 4565555666667777888876 3433212
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQ 150 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~ 150 (821)
...+ ..+...++|+|....... ....+ .+.+++..-+..+++.+...|.++++++..... . ..+++
T Consensus 130 ~~~~-~~l~~~~iPvV~~~~~~~----~~~~~---~V~~dn~~~~~~~~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 201 (327)
T TIGR02417 130 DAYY-QKLQNEGLPVVALDRSLD----DEHFC---SVISDDVDAAAELIERLLSQHADEFWYLGAQPELSVSRDRLAGFR 201 (327)
T ss_pred hHHH-HHHHhcCCCEEEEccccC----CCCCC---EEEeCcHHHHHHHHHHHHHCCCCeEEEEeCcccchhHHHHHHHHH
Confidence 2333 334567899998754322 11122 245566666677778888889999999975432 2 33444
Q ss_pred HHHHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcC---CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNS---SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~---~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ .... ...-.....+-...++++.+. .+++|+. .+...+..+++++.++| .-+
T Consensus 202 ~al~~~~----------~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~Ai~~-~~D~~A~g~~~al~~~g-~vP 264 (327)
T TIGR02417 202 QALKQAT----------LEVEWVYGGNYSRESGYQMFAKLCARLGRLPQALFT-TSYTLLEGVLDYMLERP-LLD 264 (327)
T ss_pred HHHHHcC----------CChHhEEeCCCChHHHHHHHHHHHhcCCCCCcEEEE-cCcHHHHHHHHHHHHcC-CCC
Confidence 4554443 2221 111111112233455665543 2566654 44566778999999999 544
No 185
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=96.23 E-value=0.76 Score=47.38 Aligned_cols=189 Identities=11% Similarity=0.039 Sum_probs=97.8
Q ss_pred cEEEEeCC--CchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHH
Q psy16206 2 KIVGIFGP--NEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNI 79 (821)
Q Consensus 2 ~IG~i~~~--~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~ 79 (821)
|||+++|. ........+.-++++.-+.. | +++.+.+++ ++....+....+...+|++||=..... ...
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~-----g--y~~~~~~~~--~~~~~~~~~~~l~~~~vdgiii~~~~~-~~~ 70 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKEL-----G--VEVKYVESV--EDADYEPNLRQLAAQGYDLIFGVGFGF-MDA 70 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhc-----C--ceEEEEecC--CHHHHHHHHHHHHHcCCCEEEECCcch-hHH
Confidence 79999985 12222333333444432222 3 344444422 455445666667777888776432221 233
Q ss_pred HHHHhcc-CCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC-CCCEEEEEEecCC--c---hhHHHHH
Q psy16206 80 IESMCQM-FDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM-DWDTFTIIYETHD--N---LVYLQQV 152 (821)
Q Consensus 80 v~~i~~~-~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~-~w~~v~ii~~~~~--~---~~~~~~~ 152 (821)
+....+. .++|++........ +.. .-....++..-++.++.++..+ |-++++++..+.. . ...+.+.
T Consensus 71 ~~~~~~~~~~ipvv~~~~~~~~---~~~---~~~v~~d~~~~~~~a~~l~~~~~g~~~I~~i~~~~~~~~~~R~~Gf~~~ 144 (260)
T cd06304 71 VEKVAKEYPDVKFAIIDGVVDA---PPN---VASYVFREYEGSYLAGVLAALMTKTGKVGFVGGMPIPEVNRFINGFAAG 144 (260)
T ss_pred HHHHHHHCCCCEEEEecCccCC---CCC---eeeeecchHHHHHHHHHHHHHhccCCceEEEeccccHHHHHHHHHHHHH
Confidence 4444543 47898887432210 011 1123444444445555555554 8999999975432 2 3334444
Q ss_pred HHhcCCCCCcCCCCCCeEEEE-EcC-CC--CCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHcc
Q psy16206 153 LENAHDDDKEIRPGRPSVTIR-QLP-PD--TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVH 217 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~~-~~~-~~--~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g 217 (821)
+++.+ ...... ... .. ..+-...++++.+..+++| ++.....+..+++++++.|
T Consensus 145 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai-~~~~d~~A~gv~~al~~~g 202 (260)
T cd06304 145 AKSVN----------PDITVLVIYTGSFFDPAKGKEAALALIDQGADVI-FAAAGGTGPGVIQAAKEAG 202 (260)
T ss_pred HHHhC----------CCcEEEEEEecCccCcHHHHHHHHHHHhCCCCEE-EEcCCCCchHHHHHHHHcC
Confidence 44443 322211 111 11 1233455667665667765 4555666777899999988
No 186
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=96.23 E-value=0.61 Score=50.12 Aligned_cols=193 Identities=10% Similarity=0.015 Sum_probs=116.0
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.|.-. .++..+++-+.++ . | ..+.+..++ .++..-.+....+..++|++||=-. ....
T Consensus 60 ~Ig~i~p~~~~~~~~~i~~gi~~~~~~---~------g--y~~~l~~~~-~~~~~e~~~~~~l~~~~vdGiIi~~-~~~~ 126 (333)
T COG1609 60 TIGLVVPDITNPFFAEILKGIEEAARE---A------G--YSLLLANTD-DDPEKEREYLETLLQKRVDGLILLG-ERPN 126 (333)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHH---c------C--CEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEec-CCCC
Confidence 4888888333 3344444443333 2 2 345555533 4677767777777777999888433 2222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---chhHHHHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---NLVYLQQVLE 154 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~~~~~~~~~~ 154 (821)
......+...++|+|....... .+-+-....++..-++.+++.+...|.++++++....+ ...+.+.+.+
T Consensus 127 ~~~~~~l~~~~~P~V~i~~~~~-------~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~ 199 (333)
T COG1609 127 DSLLELLAAAGIPVVVIDRSPP-------GLGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRA 199 (333)
T ss_pred HHHHHHHHhcCCCEEEEeCCCc-------cCCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHH
Confidence 3344566777999998854322 12344567788888889999999999999999998732 3334444444
Q ss_pred hcCCCCCcCCCCCCeE---EEEEcCCCCCChHHHHHHhhcCC---CcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 155 NAHDDDKEIRPGRPSV---TIRQLPPDTDDYRPLLKEIKNSS---ESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v---~~~~~~~~~~d~~~~l~~lk~~~---~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
... ..|+.. .....+....+-...+.++.... ++.|+ +++...+..+++++.+.|+..+.
T Consensus 200 al~-------~~~~~~~~~~i~~~~~~~~~g~~~~~~ll~~~~~~ptAif-~~nD~~Alg~l~~~~~~g~~vP~ 265 (333)
T COG1609 200 ALR-------EAGLPINPEWIVEGDFSEESGYEAAERLLARGEPRPTAIF-CANDLMALGALRALRELGLRVPE 265 (333)
T ss_pred HHH-------HCCCCCCcceEEecCCChHHHHHHHHHHHhcCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCC
Confidence 333 223332 12221122344445555555433 55655 55567788899999999987544
No 187
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=96.20 E-value=0.38 Score=50.94 Aligned_cols=196 Identities=9% Similarity=-0.055 Sum_probs=104.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcchHHHHH
Q psy16206 3 IVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIENRNIIE 81 (821)
Q Consensus 3 IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~~~~v~ 81 (821)
||++.+.-+...-..+..++++.=+. .|+ ++.+.+.+ .++..-.+....++.++|++|| .|..+.......
T Consensus 1 ig~~~~~~~~~~~~~~~~~i~~~a~~-----~g~--~v~~~~~~-~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l 72 (302)
T TIGR02634 1 IGVSIDDLRLERWQKDRDIFVAAAES-----LGA--KVFVQSAN-GNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAV 72 (302)
T ss_pred CeeecCccchhhHHHHHHHHHHHHHh-----cCC--EEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHH
Confidence 57777655533333333334333222 133 44455533 6777666777788888888776 333332223344
Q ss_pred HHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCC-EEEEEEecCC---c---hhHHHHHHH
Q psy16206 82 SMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWD-TFTIIYETHD---N---LVYLQQVLE 154 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~-~v~ii~~~~~---~---~~~~~~~~~ 154 (821)
..+...++|+|....... . .+....+..++...++.+++.+...+-+ +++++..+.. . ...+++.++
T Consensus 73 ~~~~~~~iPvV~~d~~~~----~--~~~~~~V~~d~~~~g~~~~~~L~~~g~~~~i~~i~g~~~~~~~~~R~~g~~~~~~ 146 (302)
T TIGR02634 73 QEAKDEGIKVVAYDRLIN----D--ADIDFYLSFDNEKVGEMQARAVLEAAPKGNYFLMGGSPTDNNAKLLRGGQMKVLQ 146 (302)
T ss_pred HHHHHCCCeEEEecCcCC----C--CCccEEEecCHHHHHHHHHHHHHhhCCCCCEEEEeCCCCCcchHHHHHHHHHHHh
Confidence 446778999998853221 1 1122346667777788888888777655 7887764322 1 233344444
Q ss_pred hcCCCCCcCCCCCCeEEEEEcCC--CCCChHHHHHHhhcC---CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 155 NAHDDDKEIRPGRPSVTIRQLPP--DTDDYRPLLKEIKNS---SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v~~~~~~~--~~~d~~~~l~~lk~~---~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.. ...++.+....+.. ...+....++++... .+++|+ ++....+..+++++++.|+.
T Consensus 147 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~aI~-~~~D~~A~g~~~al~~~g~~ 209 (302)
T TIGR02634 147 PAI------DSGDIKIVGDQWVDGWLPENALRIMENALTANDNKVDAVV-ASNDATAGGAIQALTAQGLA 209 (302)
T ss_pred hhc------cCCCeEEecCcCCCCCCHHHHHHHHHHHHHhCCCCccEEE-ECCCchHHHHHHHHHHCCCC
Confidence 321 01123322111111 112234556665432 345544 44455566789999998874
No 188
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.20 E-value=0.63 Score=48.11 Aligned_cols=192 Identities=13% Similarity=0.031 Sum_probs=103.4
Q ss_pred cEEEEeCC------Cc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcC
Q psy16206 2 KIVGIFGP------NE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGP 71 (821)
Q Consensus 2 ~IG~i~~~------~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp 71 (821)
.||+++|. +. ..+..+++-+.++ . |+++.+ .+.+ ++..-.+...+++.. ++++||-.
T Consensus 1 ~igli~p~~~~~~~~~~~~~~~~~~~~~~~~~---~------g~~~~~--~~~~--~~~~~~~~~~~~~~~~~~dgiii~ 67 (270)
T cd06294 1 TIGVVLPPSADEAFQNPFFIEVLRGISAVANE---N------GYDISL--ATGK--NEEELLEEVKKMIQQKRVDGFILL 67 (270)
T ss_pred CEEEEeCCccccCcCCCCHHHHHHHHHHHHHH---C------CCEEEE--ecCC--CcHHHHHHHHHHHHHcCcCEEEEe
Confidence 37889984 22 3444555555544 2 334443 3322 333344556666655 68876643
Q ss_pred CCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---
Q psy16206 72 QSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N--- 145 (821)
Q Consensus 72 ~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~--- 145 (821)
...... .....+...++|+|....... . .+.+..+..++...++.+++.+...|-++++++..... .
T Consensus 68 ~~~~~~-~~~~~~~~~~ipvV~~~~~~~----~--~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r 140 (270)
T cd06294 68 YSREDD-PIIDYLKEEKFPFVVIGKPED----D--KENITYVDNDNIQAGYDATEYLIKLGHKKIAFVGGDLDLEVTQDR 140 (270)
T ss_pred cCcCCc-HHHHHHHhcCCCEEEECCCCC----C--CCCCCeEEECcHHHHHHHHHHHHHcCCccEEEecCCcccHHHHHH
Confidence 222222 223445678999999854321 1 01222355566677778888888889999999975433 1
Q ss_pred hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 146 LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
...+++.+++.+ ...........+.+..+....+.++.+.+ +++|+. .+...+..+++++.+.|+.-+
T Consensus 141 ~~gf~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~iP 210 (270)
T cd06294 141 LQGYKQALEDHG-------IPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTAIVA-TDDLLALGVLKVLNELGLKVP 210 (270)
T ss_pred HHHHHHHHHHcC-------CCCCcceEEecCCchHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCC
Confidence 334444444443 10000011112222233445555654443 555554 456678889999999998643
No 189
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=96.18 E-value=0.74 Score=47.28 Aligned_cols=186 Identities=11% Similarity=0.055 Sum_probs=106.7
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.+... ..+..+++.+.++ . |+.+ .+.+++ .++....+....+...+|++||=..+....
T Consensus 1 ~i~~i~~~~~~~~~~~i~~gi~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 68 (260)
T cd06286 1 TIGVVLPYINHPYFSQLVDGIEKAALK---H------GYKV--VLLQTN-YDKEKELEYLELLKTKQVDGLILCSRENDW 68 (260)
T ss_pred CEEEEeCCCCCchHHHHHHHHHHHHHH---c------CCEE--EEEeCC-CChHHHHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 4889998644 4455566655543 2 3344 444533 566666667777777788877732222223
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~ 151 (821)
..+..+.+ .+ |++....... +..-.+.+++...+..+++.+...|-++++++..+.. . ...+.+
T Consensus 69 ~~~~~~~~-~~-pvv~~~~~~~--------~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~ 138 (260)
T cd06286 69 EVIEPYTK-YG-PIVLCEEYDS--------KNISSVYIDHYEAFYEALKYLIQKGYRKIAYCIGRKKSLNSQSRKKAYKD 138 (260)
T ss_pred HHHHHHhc-CC-CEEEEecccC--------CCCCEEEECChHHHHHHHHHHHHCCCceEEEEcCCcccchhHHHHHHHHH
Confidence 44444444 34 8887642211 1123466777778888888888889999999976432 2 334444
Q ss_pred HHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 152 VLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
.+++.+ ..+. .........+-...++++.+. .+++| ++++...+..+++.+++.|+.-
T Consensus 139 ~l~~~~----------~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~~~~~~l~~~g~~i 201 (260)
T cd06286 139 ALEEYG----------LTPDEEWIFEGCFTIEDGERIGHQLLKMKDRPDAI-FTGSDEVAAGIITEAKKQGIRV 201 (260)
T ss_pred HHHHcC----------CCCChHheEeCCCCHHHHHHHHHHHHcCCCCCCEE-EEcchHHHHHHHHHHHHcCCCC
Confidence 444443 2221 111111122334455666544 34544 4566677788999999999853
No 190
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=96.17 E-value=1 Score=46.76 Aligned_cols=191 Identities=10% Similarity=0.062 Sum_probs=97.9
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
|||++.+... ..+..+++-+.++.+-. ...++..... + .++..-.+....+.. +|+++| .|.....
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~i~~~~~~~g~~------~~~~~~~~~~-~-~~~~~~~~~i~~~~~-~vdgiii~~~~~~~ 71 (275)
T cd06307 1 RLGFLLPKGSNAFYRELAAALEAAAAAFPDA------RIRVRIHFVE-S-FDPAALAAALLRLGA-RSDGVALVAPDHPQ 71 (275)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhhhhcc------CceEEEEEcc-C-CCHHHHHHHHHHHHh-cCCEEEEeCCCcHH
Confidence 6899998644 34445555555443222 1122222222 2 455555556666666 788776 4443332
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC-C--CCEEEEEEecCC---c---hh
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM-D--WDTFTIIYETHD---N---LV 147 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~-~--w~~v~ii~~~~~---~---~~ 147 (821)
.......+...++|+|........ ... ...+...+...+...++.+... | -++++++..... . ..
T Consensus 72 ~~~~i~~~~~~~ipvV~~~~~~~~---~~~---~~~V~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~ 145 (275)
T cd06307 72 VRAAVARLAAAGVPVVTLVSDLPG---SPR---AGYVGIDNRAAGRTAAWLIGRFLGRRPGKVAVLAGSHRFRGHEEREM 145 (275)
T ss_pred HHHHHHHHHHCCCcEEEEeCCCCC---Cce---eeEEccChHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcchHHHHH
Confidence 222334455689999987532211 111 2234555556666667766654 4 469998876432 1 23
Q ss_pred HHHHHHHhcCCCCCcCCCCCCeEEEEE-cCCC--CCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 148 YLQQVLENAHDDDKEIRPGRPSVTIRQ-LPPD--TDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~--~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
.+.+.+++. +..+.... ...+ ..+....++++.+. .+++|+..... +..+++++++.|+.
T Consensus 146 gf~~a~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--~~g~~~al~~~g~~ 210 (275)
T cd06307 146 GFRSVLREE----------FPGLRVLETLEGLDDPARAYEATRKLLARHPDLVGIYNAGGG--NRGVIRALREAGRA 210 (275)
T ss_pred HHHHHHHhh----------CCCcEEEeeccCCCChHHHHHHHHHHHHhCCCceEEEECCCC--hHHHHHHHHHcCCC
Confidence 334444333 22232221 1111 12223455555433 45666665543 36899999999985
No 191
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=96.06 E-value=0.45 Score=49.22 Aligned_cols=186 Identities=11% Similarity=0.016 Sum_probs=95.8
Q ss_pred cEEEEeCC---Cc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc
Q psy16206 2 KIVGIFGP---NE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~---~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s 74 (821)
.||+++|. .. .....+++-+.++ . |+++.+...| .+...-......+...+|++||-..+.
T Consensus 1 ~vgv~~~~~~~~~~~~~~~~~~~i~~~~~~---~------g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiii~~~~ 68 (268)
T cd06277 1 NIGLIASKRILNSPAFYSEIYRAIEEEAKK---Y------GYNLILKFVS---DEDEEEFELPSFLEDGKVDGIILLGGI 68 (268)
T ss_pred CeEEEEeccccccCCcHHHHHHHHHHHHHH---c------CCEEEEEeCC---CChHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 48988886 23 3334444433332 1 3455555443 233322233334556689888853332
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVY 148 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~ 148 (821)
.. . +...+...++|+|....... .....+ +..++...++.+++.+...|.++++++..+.. . ...
T Consensus 69 ~~-~-~~~~l~~~~ipvV~~~~~~~----~~~~~~---V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~g 139 (268)
T cd06277 69 ST-E-YIKEIKELGIPFVLVDHYIP----NEKADC---VLTDNYSGAYAATEYLIEKGHRKIGFVGDPLYSPSFEERYEG 139 (268)
T ss_pred Ch-H-HHHHHhhcCCCEEEEccCCC----CCCCCE---EEecchHHHHHHHHHHHHCCCCcEEEECCCCCCcchHHHHHH
Confidence 22 2 24446677999998753322 111222 44555566677777787889999999976543 1 233
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEE--EEEcCC-C-CCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVT--IRQLPP-D-TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~--~~~~~~-~-~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
+.+.+++.+ ..+. ...... . ...+...++.+. ..++.|+ .+....+..+++++++.|+..
T Consensus 140 f~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ai~-~~~d~~a~g~~~a~~~~g~~~ 203 (268)
T cd06277 140 YKKALLDHG----------IPFNEDYDITEKEEDEEDIGKFIDELK-PLPTAFF-CSNDGVAFLLIKVLKEMGIRV 203 (268)
T ss_pred HHHHHHHcC----------CCCCcceEEEcchhHHHHHHHHHhcCC-CCCCEEE-ECCcHHHHHHHHHHHHcCCCC
Confidence 444444443 2211 111111 0 112222222221 1355544 445566677888888988853
No 192
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=96.03 E-value=0.47 Score=51.03 Aligned_cols=192 Identities=9% Similarity=0.018 Sum_probs=100.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
+|+.+....+ ..+..+++-+.++. |+++.+ ......++..-.+...+++.++|++|+= |..+..
T Consensus 25 ~i~~v~k~~~~pf~~~~~~Gi~~aa~~~---------G~~v~~--~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~a 93 (336)
T PRK15408 25 RIAFIPKLVGVGFFTSGGNGAKEAGKEL---------GVDVTY--DGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDG 93 (336)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHh---------CCEEEE--ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH
Confidence 6788877665 44455555555432 334443 2212256665567788899999988874 544444
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEec-ChhhHHHHHHHHHHh-C--CCCEEEEEEecCC--c----h
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYP-ESHLISKGISVIIND-M--DWDTFTIIYETHD--N----L 146 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p-~~~~~~~al~~~~~~-~--~w~~v~ii~~~~~--~----~ 146 (821)
...+..-+...+||+|.+.+.... . ... +-+.. ++...++.+++++.+ . +-.+++++..... . .
T Consensus 94 l~~~l~~a~~~gIpVV~~d~~~~~---~-~~~--~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~~~~~~r~ 167 (336)
T PRK15408 94 LCPALKRAMQRGVKVLTWDSDTKP---E-CRS--YYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVTDQNQWV 167 (336)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCCC---c-cce--EEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCccHHHHH
Confidence 445555577889999998644221 1 111 22222 334566666666654 2 4578988875432 1 2
Q ss_pred hHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC-CCChHHHHHHhhcCCCc--EEEEeCChhHHHHHHHHHHHcccc
Q psy16206 147 VYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD-TDDYRPLLKEIKNSSES--HILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~-~~d~~~~l~~lk~~~~~--~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
..+.+.+++.. + ++.+....+... ...-...++.+.++.++ .|+.. ....+.-.++++++.|+.
T Consensus 168 ~g~~~~l~~~~-------p-~~~vv~~~~~~~d~~~a~~~~~~lL~~~pdi~aI~~~-~~~~~~Ga~~Al~~~g~~ 234 (336)
T PRK15408 168 KEAKAKIAKEH-------P-GWEIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAP-DANALPAAAQAAENLKRD 234 (336)
T ss_pred HHHHHHHHhhC-------C-CCEEEeecCCCCcHHHHHHHHHHHHHHCCCCcEEEEC-CCccHHHHHHHHHhCCCC
Confidence 22333332221 1 344432222211 11223355555555554 44433 333334577888887763
No 193
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=95.92 E-value=1.3 Score=46.72 Aligned_cols=194 Identities=10% Similarity=0.047 Sum_probs=103.3
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
+||++.+... ..+..+++-+.++ . |+++.+. .+.+ .|+....+....++.+++++||= |..+..
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~---~------g~~v~~~-~~~~-~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~ 69 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE---L------GVDAIYV-GPTT-ADAAGQVQIIEDLIAQGVDAIAVVPNDPDA 69 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH---h------CCeEEEE-CCCC-CCHHHHHHHHHHHHhcCCCEEEEecCCHHH
Confidence 5898887544 4444555555544 2 2333322 1323 56766677777788888888874 333222
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC-CC-CEEEEEEecCC---chhHHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM-DW-DTFTIIYETHD---NLVYLQQ 151 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~-~w-~~v~ii~~~~~---~~~~~~~ 151 (821)
.......+...++|+|....... .. ..-.....+++...+..+++.+... +- ++++++..... ...+.+.
T Consensus 70 ~~~~~~~~~~~~iPvV~v~~~~~----~~-~~~~~~v~~D~~~~g~~a~~~l~~~~~~~~~I~~l~g~~~~~~~~~R~~G 144 (298)
T cd06302 70 LEPVLKKAREAGIKVVTHDSDVQ----PD-NRDYDIEQADNKAIGETLMDSLAEQMGGKGEYAIFVGSLTATNQNAWIDA 144 (298)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCC----CC-cceeEEeccCHHHHHHHHHHHHHHHcCCCCEEEEEeCCCCCcchHHHHHH
Confidence 23333345678999998853221 10 1112334567777778888887765 43 69999875432 2233333
Q ss_pred HHHhcCCCCCcCCCCC-CeEEEEEcCCCCCCh---HHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 152 VLENAHDDDKEIRPGR-PSVTIRQLPPDTDDY---RPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g-~~v~~~~~~~~~~d~---~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.+... .+| ..+..........+. ...++++.+.. ++.|+ ..+...+..+++++++.|+.
T Consensus 145 f~~~l~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~D~~A~g~~~al~~~g~~ 210 (298)
T cd06302 145 AKAYQK-------EKYYPMLELVDRQYGDDDADKSYQTAQELLKAYPDLKGII-GPTSVGIPGAARAVEEAGLK 210 (298)
T ss_pred HHHHHh-------hcCCCCeEEeCcccCCCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhHHHHHHHhcCCC
Confidence 333333 222 112221111111222 23444443333 44444 44456778899999999985
No 194
>PRK09701 D-allose transporter subunit; Provisional
Probab=95.90 E-value=1.5 Score=46.67 Aligned_cols=197 Identities=10% Similarity=-0.003 Sum_probs=104.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
.||++.+... .....+++-+.++ . |+++.+...+ ...++..-.+....++.+++++||- |..+..
T Consensus 26 ~Igvi~~~~~~~f~~~~~~gi~~~a~~---~------g~~v~~~~~~-~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~ 95 (311)
T PRK09701 26 EYAVVLKTLSNPFWVDMKKGIEDEAKT---L------GVSVDIFASP-SEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVN 95 (311)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHH---c------CCeEEEecCC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH
Confidence 5889987544 3344444444433 2 3345543323 2245666667777788888888874 333222
Q ss_pred -HHHHHHHhccCCCceeeeccCCCC-CCCCCCCccEEEEecChhhHHHHHHHHHHh-CCC--CEEEEEEecCC---c---
Q psy16206 77 -RNIIESMCQMFDIPHVEAFWDPNK-YFIPTNGVHGVNVYPESHLISKGISVIIND-MDW--DTFTIIYETHD---N--- 145 (821)
Q Consensus 77 -~~~v~~i~~~~~iP~is~~~~~~~-~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~~w--~~v~ii~~~~~---~--- 145 (821)
...+.. +...++|++........ ............+..++...++..++.+.. .|- ++++++..... .
T Consensus 96 ~~~~l~~-~~~~giPvV~~~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~aa~~L~~~~g~~~~~i~~l~g~~~~~~~~~R 174 (311)
T PRK09701 96 LVMPVAR-AWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEAR 174 (311)
T ss_pred HHHHHHH-HHHCCCcEEEeCCCCCcccccccCCceEEEeccchHHHHHHHHHHHHHHhCCCCCEEEEEECCCCCccHHHH
Confidence 233333 45688999998543211 000111122334667777788888887755 454 79998854332 2
Q ss_pred hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 146 LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
...+++.+++.+ +..+....... ...+....++++.+.. ++.| ++.....+..+++++++.|+.
T Consensus 175 ~~Gf~~al~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~I-~~~~d~~A~g~~~al~~~G~~ 241 (311)
T PRK09701 175 RNGATEAFKKAS---------QIKLVASQPADWDRIKALDVATNVLQRNPNIKAI-YCANDTMAMGVAQAVANAGKT 241 (311)
T ss_pred HHHHHHHHHhCC---------CcEEEEecCCCCCHHHHHHHHHHHHHhCCCCCEE-EECCcchHHHHHHHHHHcCCC
Confidence 333444444332 14332211111 1112344555654443 4543 455556777889999998885
No 195
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=95.89 E-value=2.1 Score=44.36 Aligned_cols=191 Identities=9% Similarity=0.025 Sum_probs=97.9
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcc-h
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIE-N 76 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~-~ 76 (821)
+||++..... ..+..+++.+.++ . |+.+. +..++..++..-.+....++..+|+++| .|.... .
T Consensus 1 ~i~~v~~~~~~~~~~~~~gi~~~~~~---~------g~~~~--~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~ 69 (271)
T cd06314 1 TIAVVTNGASPFWKIAEAGVKAAGKE---L------GVDVE--FVVPQQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAV 69 (271)
T ss_pred CeEEEcCCCcHHHHHHHHHHHHHHHH---c------CCeEE--EeCCCCCCHHHHHHHHHHHHhcCCCEEEEecCChhHh
Confidence 5888886655 3333344433333 2 23443 3321224666556667777777888887 454332 2
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---chhHHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD---NLVYLQQ 151 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~~~~~~~ 151 (821)
...+..+ .. ++|+|........ . +.+-.+..++...++.+++.+... +-.+++++..... ...+.+.
T Consensus 70 ~~~l~~~-~~-~ipvV~~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~g 141 (271)
T cd06314 70 IPALNKA-AA-GIKLITTDSDAPD---S---GRYVYIGTDNYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQG 141 (271)
T ss_pred HHHHHHH-hc-CCCEEEecCCCCc---c---ceeEEEccChHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHH
Confidence 3444544 45 9999998533221 1 112234566666677888877664 3456666654322 2233333
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.+... ..|+.+....... ...+-...++++.+.. ++.|+. .....+..+++.+++.|+.
T Consensus 142 f~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~-~~d~~a~~~~~al~~~g~~ 204 (271)
T cd06314 142 IKDAIK-------DSKIEIVDTRGDEEDFAKAKSNAEDALNAHPDLKCMFG-LYAYNGPAIAEAVKAAGKL 204 (271)
T ss_pred HHHHHh-------cCCcEEEEEecCccCHHHHHHHHHHHHHhCCCccEEEe-cCCccHHHHHHHHHHcCCC
Confidence 433333 3344443222211 1122334555554443 455543 3334455577888888876
No 196
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=95.84 E-value=1.5 Score=47.34 Aligned_cols=189 Identities=8% Similarity=-0.033 Sum_probs=99.7
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++++.-. ..+..+++-+.+ +. |+. +.+.++. .++..-.+....++.++|++||=-......
T Consensus 61 ~Igvi~~~~~~~f~~~~~~gi~~~~~---~~------g~~--~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 128 (343)
T PRK10727 61 TVGLVVGDVSDPFFGAMVKAVEQVAY---HT------GNF--LLIGNGY-HNEQKERQAIEQLIRHRCAALVVHAKMIPD 128 (343)
T ss_pred eEEEEeCCCCcchHHHHHHHHHHHHH---Hc------CCE--EEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEecCCCCh
Confidence 4888887432 333334443332 23 223 3444433 455555556667777788887732221122
Q ss_pred HHHHHHhccCCCc-eeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHH
Q psy16206 78 NIIESMCQMFDIP-HVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~~~iP-~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~ 150 (821)
..+..+.+ ++| ++....... ....+ .+.+++..-+..+++.+...|.++++++..... . ..++.
T Consensus 129 ~~~~~~~~--~~p~vV~i~~~~~----~~~~~---~V~~Dn~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 199 (343)
T PRK10727 129 AELASLMK--QIPGMVLINRILP----GFENR---CIALDDRYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYY 199 (343)
T ss_pred HHHHHHHh--cCCCEEEEecCCC----CCCCC---EEEECcHHHHHHHHHHHHHCCCccEEEEeCCccccchHHHHHHHH
Confidence 33334433 677 676643221 11112 245566666677778888889999999975432 2 34445
Q ss_pred HHHHhcCCCCCcCCCCCCeEEE---EEcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTI---RQLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~---~~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
+.+++.+ +.+.. ..-......-...++++.+.+ +++|+ +.+...+..+++++++.|+.-+.
T Consensus 200 ~al~~~g----------i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~ 265 (343)
T PRK10727 200 DALAESG----------IPANDRLVTFGEPDESGGEQAMTELLGRGRNFTAVA-CYNDSMAAGAMGVLNDNGIDVPG 265 (343)
T ss_pred HHHHHCC----------CCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCc
Confidence 5555543 22211 111111122234455554443 55555 45566777899999999986443
No 197
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=95.79 E-value=1.5 Score=46.23 Aligned_cols=189 Identities=11% Similarity=0.039 Sum_probs=97.1
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEec-CCChhHHHHHHHHHhhcCeEEEE-cCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVE-NYDSLHTAKLMCNATSEGIAAIF-GPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~-~~~~~~a~~~a~~li~~~V~aii-Gp~~s~ 75 (821)
|||++.|.-. ..+..+++-+.++ . |+.+ .+.+.+ ..+...-.+....++.++|++|| .|....
T Consensus 1 ~igvvvp~~~n~f~~~~~~gi~~~a~~---~------g~~v--~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~ 69 (295)
T TIGR02955 1 KLCALYPHLKDSYWLSINYGMVEQAKH---L------GVEL--KVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPE 69 (295)
T ss_pred CeeEEecCCCcHHHHHHHHHHHHHHHH---h------CCEE--EEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChh
Confidence 7999998544 3333344443332 2 3344 444432 13555555677778888998887 343222
Q ss_pred h-HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-CC----CCEEEEEEecCC---ch
Q psy16206 76 N-RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-MD----WDTFTIIYETHD---NL 146 (821)
Q Consensus 76 ~-~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~~----w~~v~ii~~~~~---~~ 146 (821)
. ...+..+ . .++|+|........ . ..+..+..++..-++.+++.+.. +. -++++++..... ..
T Consensus 70 ~~~~~l~~~-~-~~iPvV~~~~~~~~---~---~~~~~V~~D~~~~g~~~~~~L~~~~~~~~g~~~I~~i~g~~~~~~~~ 141 (295)
T TIGR02955 70 ALNHDLAQL-T-KSIPVFALVNQIDS---N---QVKGRVGVDWYQMGYQAGEYLAQRHPKGSGPTTLAWLPGPKNRGGTK 141 (295)
T ss_pred hhhHHHHHH-h-cCCCEEEEecCCCc---c---ceeEEEeecHHHHHHHHHHHHHHhcccCCCCeeEEEEeCCCcCCchh
Confidence 2 2333333 3 48999976322111 1 12334566666667777777765 11 346999875443 22
Q ss_pred hHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC-CCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 147 VYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD-TDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~-~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
.+.+.+.+... ..|+.+........ ..+-...++++.+. .+++| ++....+..+++++++.|+
T Consensus 142 ~R~~Gf~~al~-------~~g~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~d~i--~~~d~~a~g~l~al~~~g~ 207 (295)
T TIGR02955 142 PVTQGFRAALE-------GSDVEISAILWADNDKELQRNLLQDLLKKHPDIDYL--VGSAVAAEAAISELRSLHM 207 (295)
T ss_pred HHHHHHHHHHh-------cCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCcCEE--EeccHHHHHHHHHHHhhCc
Confidence 23333333333 23444432211111 11223345555433 35654 3455667778888888776
No 198
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=95.68 E-value=0.85 Score=47.21 Aligned_cols=188 Identities=10% Similarity=0.052 Sum_probs=96.2
Q ss_pred cEEEEeCCC---c----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc
Q psy16206 2 KIVGIFGPN---E----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~---~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s 74 (821)
|||++.|.+ . ..+..+++.+.++ . |+.+ .+.... ++..-.+....|+..+|++||--.+.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~----~-----gy~~--~i~~~~--~~~~~~~~i~~l~~~~vdgiI~~~~~ 67 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE----L-----GIEY--KYVESK--SDADYEPNLEQLADAGYDLIVGVGFL 67 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH----c-----CCeE--EEEecC--CHHHHHHHHHHHHhCCCCEEEEcCcc
Confidence 799999862 2 3334444444433 2 3333 333422 33334455666777799998853222
Q ss_pred chHHHHHHHhccC-CCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-CCCCEEEEEEecCC-ch----h
Q psy16206 75 ENRNIIESMCQMF-DIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-MDWDTFTIIYETHD-NL----V 147 (821)
Q Consensus 75 ~~~~~v~~i~~~~-~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~~w~~v~ii~~~~~-~~----~ 147 (821)
............ ++|++....... . .+.+-+.......-+..++.++.. .|-++++++..+.. .. .
T Consensus 68 -~~~~~~~~~~~~~~~PiV~i~~~~~----~--~~~~~~v~~d~~~a~~~a~~ll~~~~G~~~I~~i~~~~~~~~~~r~~ 140 (265)
T cd06354 68 -LADALKEVAKQYPDQKFAIIDAVVD----D--PPNVASIVFKEEEGSFLAGYLAALMTKTGKVGFIGGMDIPLIRRFEA 140 (265)
T ss_pred -hHHHHHHHHHHCCCCEEEEEecccC----C--CCcEEEEEecchhHHHHHHHHHHhhcCCCeEEEEecccChHHHHHHH
Confidence 223444555555 899998753211 1 011223444444444444555554 38999999975432 11 2
Q ss_pred HHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC---CCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHcc
Q psy16206 148 YLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD---TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVH 217 (821)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~---~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g 217 (821)
.+++.+++.+ ..-..+... ..... ..+-...++++.+.++++|+. .....+..+++++++.|
T Consensus 141 gf~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~pdaI~~-~nd~~A~gv~~al~~~g 206 (265)
T cd06354 141 GFEAGVKYVN-------PGVPDIEVLVQYAGSFNDPAKGKEIAQAMYDQGADVIFA-AAGGTGNGVFQAAKEAG 206 (265)
T ss_pred HHHHHHHHHh-------ccCCCceEEEEEcCcccCHHHHHHHHHHHHHCCCcEEEE-CCCCCchHHHHHHHhcC
Confidence 3333333321 000222211 11111 123344566666556876554 45666778889999988
No 199
>PRK09526 lacI lac repressor; Reviewed
Probab=95.66 E-value=1 Score=48.60 Aligned_cols=188 Identities=10% Similarity=-0.015 Sum_probs=101.9
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc--CCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG--PQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG--p~~s~ 75 (821)
.||++++... ..+..+++-+.+ +. |+.+.+. .++..++..-.+....|..++|++||- |..+.
T Consensus 65 ~Igvv~~~~~~~~~~~~~~gi~~~a~---~~------g~~~~i~--~~~~~~~~~~~~~l~~l~~~~vdGiii~~~~~~~ 133 (342)
T PRK09526 65 TIGLATTSLALHAPSQIAAAIKSRAD---QL------GYSVVIS--MVERSGVEACQAAVNELLAQRVSGVIINVPLEDA 133 (342)
T ss_pred eEEEEeCCCCcccHHHHHHHHHHHHH---HC------CCEEEEE--eCCCChHHHHHHHHHHHHhcCCCEEEEecCCCcc
Confidence 4888887533 334444444443 22 3455443 322223344445566677778888773 44332
Q ss_pred hHHHHHHHh-ccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhH
Q psy16206 76 NRNIIESMC-QMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVY 148 (821)
Q Consensus 76 ~~~~v~~i~-~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~ 148 (821)
.. ..+. ...++|+|.....+. .. +-.+.+++..-+..+++.+...|.++++++..... . ...
T Consensus 134 ~~---~~~~~~~~~iPvV~~d~~~~-----~~---~~~V~~d~~~~~~~a~~~L~~~G~~~I~~l~g~~~~~~~~~R~~G 202 (342)
T PRK09526 134 DA---EKIVADCADVPCLFLDVSPQ-----SP---VNSVSFDPEDGTRLGVEHLVELGHQRIALLAGPESSVSARLRLAG 202 (342)
T ss_pred hH---HHHHhhcCCCCEEEEeccCC-----CC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCccccHHHHHHH
Confidence 22 2222 235899998753211 11 22356666666788888888889999999975432 1 334
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEEEc-CCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIRQL-PPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
+++.+++.+ +.+..... .....+-...+.++.+. .+++|+ +++...+..+++++.+.|+.-+.
T Consensus 203 f~~al~~~g----------i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 268 (342)
T PRK09526 203 WLEYLTDYQ----------LQPIAVREGDWSAMSGYQQTLQMLREGPVPSAIL-VANDQMALGVLRALHESGLRVPG 268 (342)
T ss_pred HHHHHHHcC----------CCcceEEeCCCchHHHHHHHHHHhcCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCC
Confidence 455554443 32221111 11111122344454433 355555 45566677899999999986543
No 200
>PRK09492 treR trehalose repressor; Provisional
Probab=95.64 E-value=0.97 Score=48.07 Aligned_cols=184 Identities=8% Similarity=-0.050 Sum_probs=100.8
Q ss_pred cEEEEeCCCc-hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCC-cchHHH
Q psy16206 2 KIVGIFGPNE-EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQS-IENRNI 79 (821)
Q Consensus 2 ~IG~i~~~~~-~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~-s~~~~~ 79 (821)
.||++.+.-. ......++-..+.+++. |+. +.+.+++ .++....+....+..++|+++|-... .....
T Consensus 64 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~------gy~--~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~- 133 (315)
T PRK09492 64 VVGIIVSRLDSLSENQAVRTMLPAFYEQ------GYD--PIIMESQ-FSPEKVNEHLGVLKRRNVDGVILFGFTGITEE- 133 (315)
T ss_pred eEEEEecCCcCcccHHHHHHHHHHHHHc------CCe--EEEEecC-CChHHHHHHHHHHHhcCCCEEEEeCCCcccHH-
Confidence 5899987533 22222333333444544 334 3445533 56655555566666678988885332 22222
Q ss_pred HHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEec-CC---c---hhHHHHH
Q psy16206 80 IESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYET-HD---N---LVYLQQV 152 (821)
Q Consensus 80 v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~-~~---~---~~~~~~~ 152 (821)
.....++|++..... . . . +-.+.+++..-+..+++.+...|.++++++... .. . ...+.+.
T Consensus 134 ---~l~~~~~pvv~i~~~-~----~-~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~a 201 (315)
T PRK09492 134 ---MLAPWQDKLVLLARD-A----K-G---FSSVCYDDEGAIKLLMQRLYDQGHRHISYLGVDHSDVTTGKRRHQAYLAF 201 (315)
T ss_pred ---HHHhcCCCEEEEecc-C----C-C---CcEEEECcHHHHHHHHHHHHHcCCCeEEEEcCCcccchhHHHHHHHHHHH
Confidence 233456788766421 1 1 1 224556666667778888888899999999632 21 2 2344444
Q ss_pred HHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 153 LENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
+++.+ +.+....-+....+-...++++.+..+++|+.. +...+..+++++++.|+
T Consensus 202 l~~~g----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~-~D~~A~g~~~al~~~g~ 256 (315)
T PRK09492 202 CKQHK----------LTPVAALGGLSMQSGYELVAKVLTPETTALVCA-TDTLALGASKYLQEQGR 256 (315)
T ss_pred HHHcC----------CCceeecCCCCchHHHHHHHHHhhcCCCEEEEc-CcHHHHHHHHHHHHcCC
Confidence 44443 333221111111223345555555567777644 45667789999999997
No 201
>KOG1052|consensus
Probab=95.56 E-value=0.0076 Score=71.48 Aligned_cols=94 Identities=34% Similarity=0.405 Sum_probs=83.8
Q ss_pred HHhhhccCCcccccCchhHHHHHHhccC--ceEEEecccchhhhhhhc--CCceeecceecCCCcccccCC-chhhcccc
Q psy16206 584 HSAMESSRPSVFVKSNKEGVERVVKEKG--KYAFFMESTGIEYEVEKN--CDLMQVGGLLDSKGYGIAMPT-SKFLAKFS 658 (821)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~da~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~k-~~l~~~in 658 (821)
++.+.. .....+.+.+++++++++ |. ..+++.+...+.+...++ |++..++..+...+++ +++| ++|+..++
T Consensus 475 ~~~~~~-~~~~~~~~~~e~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~c~~~~v~~~~~~~~~~-~~~~~Spl~~~is 551 (656)
T KOG1052|consen 475 WAFKVS-QRSVPLASPEEGVERVRK-GPSGGYAFASDELYLAYLFLRDEICDLTEVGEPFLYKGYG-AFPKGSPLRSLIS 551 (656)
T ss_pred Hhhhcc-CCCccCCCHHHHHHHHHc-CCCCceEEEeccHHHHHHHhhcCCCceEEeCCcccCCCcc-eecCCCccHHHHH
Confidence 444443 466788999999999998 54 689999999999999887 9999999999999999 9999 99999999
Q ss_pred cceeEEEEeecCCccccccCCCCC
Q psy16206 659 FGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 659 ~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
.+|.++.+ .|.++++.+||+.+
T Consensus 552 ~~Il~l~e--~g~l~~~~~kw~~~ 573 (656)
T KOG1052|consen 552 RAILKLQE--TGILQKLKRKWFSK 573 (656)
T ss_pred HHHHhhcc--ccHHHHHHHHhccC
Confidence 99999999 99999999999864
No 202
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=95.43 E-value=1.7 Score=45.37 Aligned_cols=196 Identities=12% Similarity=-0.004 Sum_probs=105.3
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc-c-
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI-E- 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s-~- 75 (821)
+||++.+.-. ..+..+++.+.+ +. | .++.+.+.+ .++..-.+....++.++|++||=.... .
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~---~~------g--y~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiil~~~~~~~ 69 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAK---AI------G--WNLRILDGR-GSEAGQAAALNQAIALKPDGIVLGGVDAAE 69 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHH---Hc------C--cEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEcCCCHHH
Confidence 5888888533 233334433333 22 2 234445533 566666667777777788877743222 1
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCc-cEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC-c----hh
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGV-HGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD-N----LV 147 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~-~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~-~----~~ 147 (821)
....+.. +...++|+|.....+.. . ....+ .+-.+...+...+..+++.+... |-++++++..... . ..
T Consensus 70 ~~~~~~~-~~~~~iPvV~~d~~~~~-~-~~~~~~~~~~v~~D~~~~~~~~~~~L~~~~~G~~~i~~i~~~~~~~~~~r~~ 146 (280)
T cd06315 70 LQAELEL-AQKAGIPVVGWHAGPEP-G-PIEEPGIFYNVTTDPLAVAEVAALYAIANSGGKAGVVIFTDSRFSIAKAKAN 146 (280)
T ss_pred HHHHHHH-HHHCCCCEEEecCCCCC-C-cccCCceeEEecCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCccHHHHHH
Confidence 1233333 45689999988543221 0 10011 13345566667778888877766 8899998864432 1 24
Q ss_pred HHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHHHHhhcC---CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 148 YLQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLLKEIKNS---SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l~~lk~~---~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+++.+++... ..+. +........ .......++++.+. .+++ |++++...+..+++.+++.|+..+
T Consensus 147 ~~~~~~~a~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a-i~~~~D~~A~g~~~~l~~~g~~~p 216 (280)
T cd06315 147 AMKEIIEACK-------GCTV-LSIEDVPISRTATRMPALTARLLQRYGDKWTH-SLAINDLYFDYMAPPLASAGRKAD 216 (280)
T ss_pred HHHHHHHhCC-------CCEE-EEecccCcchhhhhhHHHHHHHHHhcCcccce-ecccchhhhHHhHHHHHHhcccCC
Confidence 5666666553 2221 121111111 11112344555443 2454 445556777788999999998644
No 203
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A.
Probab=95.40 E-value=0.06 Score=55.04 Aligned_cols=182 Identities=14% Similarity=0.128 Sum_probs=103.2
Q ss_pred eHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccc-hhhh--cceeecccce----
Q psy16206 440 YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT-SERR--AAVDFTMPFM---- 512 (821)
Q Consensus 440 ~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t-~~R~--~~~~fS~p~~---- 512 (821)
.-..+.+.|.+++|.+++++..+ ++..+..++.+|++|+++.+-..- ..+. ...-+..+..
T Consensus 15 ~~~~l~~~L~~~~g~~v~~~~~~------------~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 82 (243)
T PF12974_consen 15 RWAPLADYLSKQLGVPVELVPAD------------DYAEFIEALRSGEIDLAFMGPLPYVQARQRAGVEPLATPVGPDGS 82 (243)
T ss_dssp HHHHHHHHHHHHHTSEEEEE--S------------SHHHHHHHHHTTS-SEEE--HHHHHHHHHHSSEEEEEEEEETTT-
T ss_pred HHHHHHHHHHHHhCCCEEEEEcC------------CHHHHHHHHHcCCccEEEECcHHHHHHhhcCcEEEEEEecccCCC
Confidence 34578899999999999999765 789999999999999997632222 1221 2222222222
Q ss_pred -eeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhh-hc-
Q psy16206 513 -TLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAM-ES- 589 (821)
Q Consensus 513 -~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 589 (821)
.....++++++++ ..++ +.++..+ +++....+....+--. ..+ ..
T Consensus 83 ~~~~~~ivv~~ds~-i~~l-~dL~Gk~-----------------------------v~~~~~~s~sg~l~~~-~~L~~~~ 130 (243)
T PF12974_consen 83 PSYRSVIVVRADSP-ITSL-ADLKGKR-----------------------------VAFPDPSSTSGYLIPR-YELLREA 130 (243)
T ss_dssp SCEEEEEEEETTSS---SH-HHHGGSE-----------------------------EEEE-TT-TTTTHHHH-HHTCCCC
T ss_pred cceeEEEEEECCCC-CCCh-hhcCCCE-----------------------------EEEecCCccHHHHHHH-HHHHHHc
Confidence 4567888888865 2222 2222222 1222222111111000 001 00
Q ss_pred ------cCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc----CCceeecceecCCCcccccCC---chhhcc
Q psy16206 590 ------SRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN----CDLMQVGGLLDSKGYGIAMPT---SKFLAK 656 (821)
Q Consensus 590 ------~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~k---~~l~~~ 656 (821)
....+++.+...++.+|.+ |++|+.+......+.+...+ .+++++.....--+..+++++ ++++++
T Consensus 131 Gl~~~~~~~~~~~~~~~~~~~~l~~-G~~Da~~~~~~~~~~~~~~~~~~~~~~rvl~~s~~~p~~~~~~~~~~~~~~~~~ 209 (243)
T PF12974_consen 131 GLDPGDDFKQVFVGSHDAVLEALLN-GKADAAAIPSDAFERLEAEGPDIPSQLRVLWTSPPYPNWPLVASPDLPPELRQR 209 (243)
T ss_dssp T--HHHHSSEEEEE-HHHHHHHHHT-TSSSEEEEEHHHHHHHHHH-HHHHTTEEEEEEEEEEE--EEEEETTS-HHHHHH
T ss_pred CCChhHceeEEEeCCHHHHHHHHHc-CCccEEEEechhHHHHHHccCcccccEEEEEEeCCCCCcEEEEeCCCCHHHHHH
Confidence 0122356688899999998 99999999998888777653 467776653322333455555 668888
Q ss_pred cccceeEEEE
Q psy16206 657 FSFGFAKLRV 666 (821)
Q Consensus 657 in~al~~l~~ 666 (821)
|-.+|..+..
T Consensus 210 l~~al~~~~~ 219 (243)
T PF12974_consen 210 LRDALLSLSK 219 (243)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHcCCC
Confidence 8888877665
No 204
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=95.35 E-value=0.055 Score=57.32 Aligned_cols=140 Identities=9% Similarity=-0.005 Sum_probs=75.0
Q ss_pred HHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccc-hhhhccee----ecccceeeceEEEEE
Q psy16206 447 MIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT-SERRAAVD----FTMPFMTLGISILYR 521 (821)
Q Consensus 447 ~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t-~~R~~~~~----fS~p~~~~~~~l~~~ 521 (821)
.+++++|++++++.++ ++..++.+|..|++|+++.+.... ..+.+... +..++......++++
T Consensus 20 ~~~k~~Gl~Ve~~~~~------------~~~~~~~al~~G~iD~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~~~~lv~~ 87 (300)
T TIGR01729 20 AAAKEAGATIDWRKFD------------SGADISTALASGNVPIGVIGSSPLAAAASRGVPIELFWILDNIGKSEALVAR 87 (300)
T ss_pred chHHhcCCeeEEEecC------------cHHHHHHHHHcCCCCEeccCCCHHHHHHHCCCCeEEEEEeccCCccceEEec
Confidence 5667789999999765 678899999999999986543322 23333322 223333344577888
Q ss_pred cCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchh
Q psy16206 522 KPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKE 601 (821)
Q Consensus 522 ~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (821)
+++. ..+ ...+++.+..++. .+.....+..++... .+.........-+..+
T Consensus 88 ~~s~-I~s-~~DLkGK~Igv~~---~s~~~~~l~~~L~~~------------------------Gl~~~dv~~v~~~~~~ 138 (300)
T TIGR01729 88 EGSG-IEK-PEDLKGKNVAVPF---VSTTHYSLLAALKHW------------------------KTDPREVNILNLKPPQ 138 (300)
T ss_pred CCCC-CCC-hhHcCCCEEEeCC---CCcHHHHHHHHHHHc------------------------CCChhheEEEecCcHH
Confidence 7654 222 2334443322210 000000000111000 0000111112224677
Q ss_pred HHHHHHhccCceEEEecccchhhhhhh
Q psy16206 602 GVERVVKEKGKYAFFMESTGIEYEVEK 628 (821)
Q Consensus 602 ~~~~v~~~g~~da~i~~~~~~~~~~~~ 628 (821)
+..++.+ |++|+++...+....+.+.
T Consensus 139 ~~~al~~-G~vDa~~~~~p~~~~~~~~ 164 (300)
T TIGR01729 139 IVAAWQR-GDIDAAYVWPPALSELLKS 164 (300)
T ss_pred HHHHHHc-CCcCEEEEecHHHHHHHhc
Confidence 8888888 9999999888776555443
No 205
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=95.28 E-value=2.2 Score=45.67 Aligned_cols=192 Identities=12% Similarity=0.037 Sum_probs=104.1
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.+.-. ..+..+++-+.+ +. |+++. +.+++ .++..-.+....++.++|++||=..+....
T Consensus 65 ~Igvi~~~~~~~~~~~~~~gi~~~~~---~~------g~~~~--~~~~~-~~~~~~~~~~~~~~~~~vdgiI~~~~~~~~ 132 (331)
T PRK14987 65 AIGVLLPSLTNQVFAEVLRGIESVTD---AH------GYQTM--LAHYG-YKPEMEQERLESMLSWNIDGLILTERTHTP 132 (331)
T ss_pred EEEEEeCCCcchhHHHHHHHHHHHHH---HC------CCEEE--EecCC-CCHHHHHHHHHHHHhcCCCEEEEcCCCCCH
Confidence 4788887432 333444444433 22 33443 34422 455544455566777788887742222222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC--c---hhHHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD--N---LVYLQQV 152 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~--~---~~~~~~~ 152 (821)
..+ ..+...++|+|....... . .... .+.+++..-+..+++.+...|.++++++..... . ..++++.
T Consensus 133 ~~~-~~l~~~~iPvV~~~~~~~----~-~~~~--~V~~Dn~~~~~~a~~~L~~~Gh~~I~~i~~~~~~~~~~R~~Gf~~a 204 (331)
T PRK14987 133 RTL-KMIEVAGIPVVELMDSQS----P-CLDI--AVGFDNFEAARQMTTAIIARGHRHIAYLGARLDERTIIKQKGYEQA 204 (331)
T ss_pred HHH-HHHHhCCCCEEEEecCCC----C-CCCc--eEEeCcHHHHHHHHHHHHHCCCceEEEEcCCCcccHHHHHHHHHHH
Confidence 223 345678999997632111 1 1112 366677777788888888899999999965432 1 3444555
Q ss_pred HHhcCCCCCcCCCCCCeEEEEEcCC--CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcceE
Q psy16206 153 LENAHDDDKEIRPGRPSVTIRQLPP--DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDYQN 224 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~~~~~~--~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~ 224 (821)
+++.+ .......+.. ...+-...++++.+. .+++|+ +++...+..+++++++.|+.-++-.
T Consensus 205 l~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nD~~A~g~~~al~~~g~~vP~di 269 (331)
T PRK14987 205 MLDAG----------LVPYSVMVEQSSSYSSGIELIRQARREYPQLDGVF-CTNDDLAVGAAFECQRLGLKVPDDM 269 (331)
T ss_pred HHHcC----------CCccceeecCCCChhhHHHHHHHHHhcCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCcc
Confidence 55444 2111011111 111223355555443 356555 4556677788999999998755433
No 206
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=95.19 E-value=2.5 Score=44.67 Aligned_cols=158 Identities=8% Similarity=0.018 Sum_probs=78.7
Q ss_pred CChhHHHHHHHHHhhcCeEEEE-cCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEec-ChhhHHHHHH
Q psy16206 48 YDSLHTAKLMCNATSEGIAAIF-GPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYP-ESHLISKGIS 125 (821)
Q Consensus 48 ~~~~~a~~~a~~li~~~V~aii-Gp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p-~~~~~~~al~ 125 (821)
.++..-.+....++.+++++|| -|..+.........+...+||+|........ . .....+.. ++...++..+
T Consensus 40 ~d~~~q~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~~~~~giPvV~~~~~~~~---~---~~~~~v~~~Dn~~~g~~aa 113 (302)
T TIGR02637 40 TTAEGQIEVVNSLIAQKVDAIAISANDPDALVPALKKAMKRGIKVVTWDSGVAP---E---GRNLFLNQASADLIGRTQV 113 (302)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEeCCCCCC---C---ceeEEEecCCHHHHHHHHH
Confidence 5676666778888888888766 3443333233334456689999988543221 1 12334443 3333444445
Q ss_pred HHHH-hC-CCCEEEEEEecCC--c----hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcCC--C
Q psy16206 126 VIIN-DM-DWDTFTIIYETHD--N----LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNSS--E 194 (821)
Q Consensus 126 ~~~~-~~-~w~~v~ii~~~~~--~----~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~~--~ 194 (821)
+.+. ++ +-.+++++..+.. . ...+++.+++.+ ..+..+....... ...+-...++++.+.. +
T Consensus 114 ~~l~~~l~~~~~I~~i~g~~~~~~~~~r~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 186 (302)
T TIGR02637 114 QLAAEQIGNGGEIAILSAASTATNQNAWIEIMKKELKDPK-------YPKVKLVATVYGDDDAQKSYQEAQGLLKSYPNL 186 (302)
T ss_pred HHHHHHcCCCcEEEEEECCCCCccHHHHHHHHHHHHhhcc-------CCCCEEEeeecCCchHHHHHHHHHHHHHhCCCc
Confidence 5443 32 3379998875432 1 122333333221 1122222111111 1122233455554444 4
Q ss_pred cEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 195 SHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 195 ~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.|+. .....+..+++++++.|..
T Consensus 187 ~ai~~-~~d~~a~ga~~al~~~g~~ 210 (302)
T TIGR02637 187 KGIIA-PTTVGIKAAAQAVSDAKLI 210 (302)
T ss_pred cEEEe-CCCchHHHHHHHHHhcCCC
Confidence 45554 3355566778888888864
No 207
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.19 E-value=1.7 Score=44.73 Aligned_cols=181 Identities=10% Similarity=0.041 Sum_probs=99.0
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
+||++.|.+. ..+..+++-+.++. + |+.+.+ .. . +. .+....|...+|++||-...+. .
T Consensus 1 ~ig~i~~~~~~~~~~~~~gi~~~~~~~---~-----g~~~~~--~~-~--~~---~~~~~~l~~~~vdGiI~~~~~~--~ 62 (265)
T cd01543 1 RVALLVETSSSYGRGVLRGIARYAREH---G-----PWSIYL--EP-R--GL---QEPLRWLKDWQGDGIIARIDDP--E 62 (265)
T ss_pred CeEEEecccchhhHHHHHHHHHHHHhc---C-----CeEEEE--ec-c--cc---hhhhhhccccccceEEEECCCH--H
Confidence 6899998554 33333333333321 2 334433 32 1 11 3444555556888888532222 2
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC--c---hhHHHHHH
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD--N---LVYLQQVL 153 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~--~---~~~~~~~~ 153 (821)
....+...++|+|....... . +.+-++..++...+..+++.+...|.++++++..... . ...+++.+
T Consensus 63 -~~~~l~~~~~PvV~~~~~~~----~---~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~ 134 (265)
T cd01543 63 -MAEALQKLGIPVVDVSGSRE----K---PGIPRVTTDNAAIGRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLV 134 (265)
T ss_pred -HHHHHhhCCCCEEEEeCccC----C---CCCCEEeeCHHHHHHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 22345667999999854322 1 1234577788888888888888889999999875543 1 23344444
Q ss_pred HhcCCCCCcCCCCCCeEEE-EEc-CCCCCC---hHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 154 ENAHDDDKEIRPGRPSVTI-RQL-PPDTDD---YRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~-~~~-~~~~~d---~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
++.+ ..+.. ... .....+ ....++++.+. .+++|+ +++...+..+++.+++.|+.
T Consensus 135 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~ 196 (265)
T cd01543 135 AEAG----------YECSFFYRGLSTDAQSWEEEQEELAQWLQSLPKPVGIF-ACTDARARQLLEACRRAGIA 196 (265)
T ss_pred HHcC----------CccccccCccccccccHHHHHHHHHHHHhcCCCCcEEE-ecChHHHHHHHHHHHHhCCC
Confidence 4443 33211 110 011112 23345554433 345444 45566777789999999985
No 208
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=95.13 E-value=2 Score=44.04 Aligned_cols=184 Identities=10% Similarity=-0.016 Sum_probs=99.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.|... ..+.++++.+.+ +. |+.+.+...+ +. .+....+..++|++||-..+....
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~---~~------g~~~~~~~~~----~~---~~~~~~l~~~~vdgii~~~~~~~~ 64 (261)
T cd06272 1 TIGLIWPSVSRVALTELVTGINQAIS---KN------GYNMNVSITP----SL---AEAEDLFKENRFDGVIIFGESASD 64 (261)
T ss_pred CEEEEecCCCchhHHHHHHHHHHHHH---Hc------CCEEEEEecc----cH---HHHHHHHHHcCcCEEEEeCCCCCh
Confidence 4899998655 333344444333 22 3344443322 22 123445666688877633222222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~ 151 (821)
..+ ......++|+|....... ...+ .+..++...+..+++.+...|-++++++..... . ...+++
T Consensus 65 ~~~-~~~~~~~ipvV~~~~~~~-----~~~~---~V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~ 135 (261)
T cd06272 65 VEY-LYKIKLAIPVVSYGVDYD-----LKYP---IVNVDNEKAMELAVLYLAEKGHKKIAYIGDLSLDRRQRKRFKGFLE 135 (261)
T ss_pred HHH-HHHHHcCCCEEEEcccCC-----CCCC---EEEEChHHHHHHHHHHHHHcCchhEEEeecccccccHHHHHHHHHH
Confidence 223 344578899998753211 1122 255667777788888888889999999975432 1 334445
Q ss_pred HHHhcCCCCCcCCCCCCeEEE---EEcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTI---RQLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~---~~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+ ..+.. .............+.++.+.. +++ |+.+....+..+++.+++.|+.-+
T Consensus 136 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~~~~~~l~~~g~~vp 199 (261)
T cd06272 136 TCDENG----------ISISDSHIDVDGLSAEGGDNAAKKLLKESDLPTA-IICGSYDIALGVLSALNKQGISIP 199 (261)
T ss_pred HHHHcC----------CCCCHHHeeeCCCCHHHHHHHHHHHHcCCCCCCE-EEECCcHHHHHHHHHHHHhCCCCC
Confidence 554443 21111 111111122334555555443 455 444556667778999999998644
No 209
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=95.02 E-value=0.12 Score=55.15 Aligned_cols=71 Identities=13% Similarity=0.023 Sum_probs=45.3
Q ss_pred HHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhh--cc----eeecccceee
Q psy16206 442 VDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERR--AA----VDFTMPFMTL 514 (821)
Q Consensus 442 ~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~--~~----~~fS~p~~~~ 514 (821)
.+....+.++. +++++++..+ +...++.+|.+|++|+++.+ ..+..+. .. +..+.|+...
T Consensus 43 ~~~~~~~~~~~p~v~ie~~~~~------------~~~~~~~aL~~G~iDia~~~-~~~~~~~~~~g~~~~~v~~~~~~~~ 109 (314)
T PRK11553 43 AKSHQLLEKRFPQTKISWVEFP------------AGPQMLEALNVGSIDLGSTG-DIPPIFAQAAGADLVYVGVEPPKPK 109 (314)
T ss_pred HHhhCHHHHhCCCCeeEEEECC------------CcHHHHHHHHcCCCCEEccC-CHHHHHHHhCCCCEEEEEEecCCCc
Confidence 34444555554 7888888653 45689999999999998653 2333332 11 1124566666
Q ss_pred ceEEEEEcCCC
Q psy16206 515 GISILYRKPAK 525 (821)
Q Consensus 515 ~~~l~~~~~~~ 525 (821)
..+++++++++
T Consensus 110 ~~~lvv~~~s~ 120 (314)
T PRK11553 110 AEVILVAENSP 120 (314)
T ss_pred ceEEEEeCCCC
Confidence 67888887765
No 210
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=94.99 E-value=2.7 Score=45.15 Aligned_cols=192 Identities=9% Similarity=-0.049 Sum_probs=105.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
+||++.+..+ ..+.++++-+.+ +. | +++.+.+++ .++..-.+....++.++|++||= |.....
T Consensus 27 ~Ig~i~~~~~~~f~~~~~~gi~~~a~---~~------g--~~l~i~~~~-~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~ 94 (330)
T PRK10355 27 KIGMAIDDLRLERWQKDRDIFVKKAE---SL------G--AKVFVQSAN-GNEETQMSQIENMINRGVDVLVIIPYNGQV 94 (330)
T ss_pred eEEEEecCCCchHHHHHHHHHHHHHH---Hc------C--CEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 6899998554 334444544443 33 2 334445533 57766667777788888888863 332222
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEe-cC-C--c---hhHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYE-TH-D--N---LVYL 149 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~-~~-~--~---~~~~ 149 (821)
.......+...++|+|....... . .+....+.+++...++.+++.+...|.++++++.. .. . . ...+
T Consensus 95 ~~~~l~~~~~~~iPvV~id~~~~----~--~~~~~~V~~D~~~~g~~a~~~L~~~g~~~i~~i~~g~~~~~~~~~R~~gf 168 (330)
T PRK10355 95 LSNVIKEAKQEGIKVLAYDRMIN----N--ADIDFYISFDNEKVGELQAKALVDKVPQGNYFLMGGSPVDNNAKLFRAGQ 168 (330)
T ss_pred HHHHHHHHHHCCCeEEEECCCCC----C--CCccEEEecCHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCccHHHHHHHH
Confidence 22333455778899998853221 1 11223578888888899999998888888765543 22 1 1 2233
Q ss_pred HHHHHhcCCCCCcCCCCC-CeEEEEEcCC--CCCChHHHHHHhhc-C--CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 150 QQVLENAHDDDKEIRPGR-PSVTIRQLPP--DTDDYRPLLKEIKN-S--SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g-~~v~~~~~~~--~~~d~~~~l~~lk~-~--~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
++.+++.. ..+ +.+....... ...+-...++++.+ . .+++|+ +.+...+..+++++++.|+.
T Consensus 169 ~~~l~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~~~aI~-~~nD~~A~g~l~al~~~g~~ 236 (330)
T PRK10355 169 MKVLKPYI-------DSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVV-ASNDATAGGAIQALSAQGLS 236 (330)
T ss_pred HHHHhhhc-------cCCCeEEecccCCCCCCHHHHHHHHHHHHHhCCCCccEEE-ECCCchHHHHHHHHHHCCCC
Confidence 33443321 112 3221111111 11122344555432 2 355444 45566677799999999975
No 211
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=94.91 E-value=1.9 Score=44.37 Aligned_cols=188 Identities=9% Similarity=0.081 Sum_probs=99.0
Q ss_pred cEEEEeCCCc--hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHH
Q psy16206 2 KIVGIFGPNE--EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNI 79 (821)
Q Consensus 2 ~IG~i~~~~~--~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~ 79 (821)
|||.+++-+- ...-.+...+++++.+..+ +++.+.+ ...++....+..++++++|+..||+. +.....+
T Consensus 1 kva~l~~g~~~D~~~n~~~~~G~~~~~~~~g-------v~~~~~e-~~~~~~~~~~~i~~~~~~g~dlIi~~-g~~~~~~ 71 (258)
T cd06353 1 KVAFVYVGPIGDQGWNYAHDEGRKAAEKALG-------VEVTYVE-NVPEGADAERVLRELAAQGYDLIFGT-SFGFMDA 71 (258)
T ss_pred CEEEEEeCCCCccchhHHHHHHHHHHHHhcC-------CeEEEEe-cCCchHhHHHHHHHHHHcCCCEEEEC-chhhhHH
Confidence 6888887222 2233333444445544432 4566666 43377788889999999999999983 3344455
Q ss_pred HHHHhccC-CCceeeeccCCCCCCCCCCCccEEEEecChh---hHHHHHHHHHHhCCCCEEEEEEecCC-----chhHHH
Q psy16206 80 IESMCQMF-DIPHVEAFWDPNKYFIPTNGVHGVNVYPESH---LISKGISVIINDMDWDTFTIIYETHD-----NLVYLQ 150 (821)
Q Consensus 80 v~~i~~~~-~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~---~~~~al~~~~~~~~w~~v~ii~~~~~-----~~~~~~ 150 (821)
+..++.++ ++.++....... .+.+........ .++-+++..+..- .+|++|...+. ....+.
T Consensus 72 ~~~vA~~~p~~~F~~~d~~~~-------~~Nv~~~~~~~~e~~ylaG~~Aa~~t~t--~kVG~I~g~~~~~~~~~~~gF~ 142 (258)
T cd06353 72 ALKVAKEYPDVKFEHCSGYKT-------APNVGSYFARIYEGRYLAGVVAGKMTKT--NKVGYVAAFPIPEVVRGINAFA 142 (258)
T ss_pred HHHHHHHCCCCEEEECCCCCC-------CCCeeeEechhhHHHHHHHHHHHHhhcC--CcEEEEcCcccHHHHHHHHHHH
Confidence 56666555 333333222111 133332222221 2333344444332 58998876543 223333
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEEEcCC--CCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIRQLPP--DTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~~~~~--~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
.=++... + ++.+....... +...-....+.|.+.++|+|+-.+ ...-+++++++.|.
T Consensus 143 ~G~~~~~-------p-~~~v~~~~~g~~~D~~~a~~~a~~l~~~G~DvI~~~~---~~~g~~~aa~~~g~ 201 (258)
T cd06353 143 LGARSVN-------P-DATVKVIWTGSWFDPAKEKEAALALIDQGADVIYQHT---DSPGVIQAAEEKGV 201 (258)
T ss_pred HHHHHHC-------C-CcEEEEEEecCCCCcHHHHHHHHHHHHCCCcEEEecC---CChHHHHHHHHhCC
Confidence 3223232 2 23333222211 122335566777788999888777 22457888888773
No 212
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.90 E-value=3.1 Score=43.37 Aligned_cols=149 Identities=15% Similarity=0.017 Sum_probs=84.2
Q ss_pred HHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCE
Q psy16206 56 LMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDT 135 (821)
Q Consensus 56 ~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~ 135 (821)
....+...++++||--.+..... ....+...++|+|....... +..-.+.+++...+..+++.+...|-++
T Consensus 48 ~~~~~~~~~~dgiii~~~~~~~~-~~~~~~~~~ipvV~~~~~~~--------~~~~~v~~d~~~~g~~~~~~L~~~g~~~ 118 (283)
T cd06279 48 DSALVVSALVDGFIVYGVPRDDP-LVAALLRRGLPVVVVDQPLP--------PGVPSVGIDDRAAAREAARHLLDLGHRR 118 (283)
T ss_pred HHHHHHhcCCCEEEEeCCCCChH-HHHHHHHcCCCEEEEecCCC--------CCCCEEeeCcHHHHHHHHHHHHHcCCCc
Confidence 34455666888888543332223 33445678999998843211 1123466777778888889898899999
Q ss_pred EEEEEecC-------------------C----chhHHHHHHHhcCCCCCcCCCCCCeEEEEEc-CCCCCChHHHHHHhhc
Q psy16206 136 FTIIYETH-------------------D----NLVYLQQVLENAHDDDKEIRPGRPSVTIRQL-PPDTDDYRPLLKEIKN 191 (821)
Q Consensus 136 v~ii~~~~-------------------~----~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~d~~~~l~~lk~ 191 (821)
++++..+. . ....+.+.+++.+ ..-........ ..+..+....++++.+
T Consensus 119 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (283)
T cd06279 119 IGILGLRLGRDRNTGRVTDERLASATFSVARERLEGYLEALEEAG-------IDISDVPIWEIPENDRASGEEAARELLD 191 (283)
T ss_pred EEEecCcccccccccccccccccccccccHHHHHHHHHHHHHHcC-------CCCChheEEecCCCchHHHHHHHHHHHc
Confidence 99996531 0 1333444444433 10001111111 1112334455666654
Q ss_pred CC--CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 192 SS--ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 192 ~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+. +++|+ .+....+..+++++++.|+.-+
T Consensus 192 ~~~~~~ai~-~~~d~~a~gv~~al~~~g~~ip 222 (283)
T cd06279 192 ASPRPTAIL-CMSDVLALGALQVARELGLRVP 222 (283)
T ss_pred CCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCC
Confidence 43 44444 4555667779999999998533
No 213
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=94.81 E-value=3.2 Score=44.84 Aligned_cols=189 Identities=7% Similarity=-0.011 Sum_probs=98.5
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++++... ..+..+++-+.++ . |+.+ .+.+.. .++..-.+....+..+++++||--......
T Consensus 61 ~Igvi~~~~~~~f~~~l~~gi~~~~~~---~------gy~~--~~~~~~-~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~ 128 (346)
T PRK10401 61 TIGVVVMDVSDAFFGALVKAVDLVAQQ---H------QKYV--LIGNSY-HEAEKERHAIEVLIRQRCNALIVHSKALSD 128 (346)
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHH---C------CCEE--EEEcCC-CChHHHHHHHHHHHhcCCCEEEEeCCCCCh
Confidence 4888987543 3344444444332 2 2233 344422 455555556666667788877632212122
Q ss_pred HHHHHHhccCCCc-eeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHH
Q psy16206 78 NIIESMCQMFDIP-HVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~~~iP-~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~ 150 (821)
..+..+.. ++| ++....... ....+ .+..++..-+..+++++...|.++++++..... . ..++.
T Consensus 129 ~~~~~~~~--~~p~vV~i~~~~~----~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 199 (346)
T PRK10401 129 DELAQFMD--QIPGMVLINRVVP----GYAHR---CVCLDNVSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRRAGWM 199 (346)
T ss_pred HHHHHHHh--cCCCEEEEecccC----CCCCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCcchHHHHHHHH
Confidence 23334444 355 666543221 11122 244566556667778888889999999975432 2 33444
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEE-EcCC--CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIR-QLPP--DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~-~~~~--~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
+.+++.+ +.+... .... ....-...++++.+. .+++|+ +.+...+..+++++++.|+.-+.
T Consensus 200 ~al~~~g----------i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~ 265 (346)
T PRK10401 200 SALKEQG----------IIPPESWIGTGTPDMQGGEAAMVELLGRNLQLTAVF-AYNDNMAAGALTALKDNGIAIPL 265 (346)
T ss_pred HHHHHcC----------CCCChhheecCCCChHHHHHHHHHHHcCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCC
Confidence 5555443 222111 1111 111222345555433 356655 45566777899999999986543
No 214
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=94.73 E-value=6 Score=40.83 Aligned_cols=186 Identities=10% Similarity=-0.003 Sum_probs=98.0
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHH-HhhcCeEEEEcCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCN-ATSEGIAAIFGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~-li~~~V~aiiGp~~s~~ 76 (821)
.||++.|... .....+++.+.++ . |+++.+ ..++ .+ ....+...+ +...+|++||=-.+...
T Consensus 1 ~Igvi~p~~~~~~~~~~~~~i~~~~~~---~------gy~~~~--~~~~-~~-~~~~~~~~~~l~~~~vdgvi~~~~~~~ 67 (269)
T cd06297 1 TISVLLPVVATEFYRRLLEGIEGALLE---Q------RYDLAL--FPLL-SL-ARLKRYLESTTLAYLTDGLLLASYDLT 67 (269)
T ss_pred CEEEEeCCCcChhHHHHHHHHHHHHHH---C------CCEEEE--EeCC-Cc-HHHHHHHHHHHHhcCCCEEEEecCccC
Confidence 3899998644 3333444444333 2 334444 3322 22 222344444 44557777763222222
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecC---------Cc--
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETH---------DN-- 145 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~---------~~-- 145 (821)
.. ....+...++|+|....... ..+ ...+++..-+..+++.+... .++++++.... ..
T Consensus 68 ~~-~~~~l~~~~iPvv~~~~~~~------~~~---~v~~d~~~~g~~a~~~L~~~-~~~i~~i~~~~~~~~~~~~~~~~~ 136 (269)
T cd06297 68 ER-LAERRLPTERPVVLVDAENP------RFD---SFYLDNRLGGRLAGAYLADF-PGRIGAITVEEEPDRAFRRTVFAE 136 (269)
T ss_pred hH-HHHHHhhcCCCEEEEccCCC------CCC---EEEECcHHHHHHHHHHHHHh-CCceEEEeCccccccccccccHHH
Confidence 23 33445678999998854221 112 23467777777777777766 79999886432 11
Q ss_pred -hhHHHHHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 146 -LVYLQQVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
..++++.+++.+ ..+. .........+....++++.+.. +++|+ .++...+..+++.+++.|..
T Consensus 137 R~~gf~~~~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~ 205 (269)
T cd06297 137 RRAGFQQALKDAG----------RPFSPDLLAITDHSEEGGRLAMRHLLEKASPPLAVF-ASADQQALGALQEAVELGLT 205 (269)
T ss_pred HHHHHHHHHHHcC----------CCCChhhEEeCCCChhhHHHHHHHHHcCCCCCcEEE-EcCcHHHHHHHHHHHHcCCC
Confidence 344445554443 2221 1111111233445666665443 45554 44556777899999999986
Q ss_pred Ccc
Q psy16206 220 GDY 222 (821)
Q Consensus 220 ~~~ 222 (821)
-+.
T Consensus 206 vP~ 208 (269)
T cd06297 206 VGE 208 (269)
T ss_pred CCC
Confidence 443
No 215
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=94.49 E-value=0.26 Score=51.44 Aligned_cols=189 Identities=15% Similarity=0.075 Sum_probs=108.4
Q ss_pred eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEe-ccccc-hhhhc----ceeec-ccc
Q psy16206 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAIC-DLTIT-SERRA----AVDFT-MPF 511 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~-~~~~t-~~R~~----~~~fS-~p~ 511 (821)
...--+.+.|.+++|+++++.+.+ +++++++++.+|++|++.. +..+. ..|.. .+..+ .+-
T Consensus 52 ~~~~pl~~~L~~~lG~~V~~~~a~------------dy~~vieal~~g~~D~A~~~~~a~~~a~~~~~~~e~~~~~~~~d 119 (299)
T COG3221 52 PAWAPLADYLEKELGIPVEFFVAT------------DYAAVIEALRAGQVDIAWLGPSAYVEAVDRALAGEPLAQTVQKD 119 (299)
T ss_pred HHHHHHHHHHHHHhCCceEEEecc------------cHHHHHHHHhCCCeeEEecCchhHHHHHhhcccccceeeeeccC
Confidence 556678899999999999998866 7899999999999998743 22222 22222 12222 111
Q ss_pred e--eeceEEEEEcCCCCCCCcccccccCchhHHHHH-HHHHHHHHHHH-HhhhhcCCCcceeEeecCCChHHHHHHHHhh
Q psy16206 512 M--TLGISILYRKPAKKQPDLFSFLEPLSFDVWVYM-ATAYLGVSLLL-FFLARISSGSRLRYSAKNSNVSLYQRMHSAM 587 (821)
Q Consensus 512 ~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (821)
. .-..+++++++++ ..++. .++ ...|..- -.+..|..+-. ++.+... .+.
T Consensus 120 g~~~Y~S~~i~~~ds~-i~sl~-dlk---gk~~af~d~~StSG~l~P~~~L~~~g~-------------~d~-------- 173 (299)
T COG3221 120 GSPGYYSVIIVRADSP-IKSLE-DLK---GKRFAFGDPDSTSGYLFPLYYLAKEGG-------------IDP-------- 173 (299)
T ss_pred CCcceeEEEEEeCCCC-cchHH-Hhc---CCeEeccCCCcchhhHhHHHHHHHhcC-------------CCh--------
Confidence 1 1134566777665 32322 222 2211000 00011111000 1111000 000
Q ss_pred hccCCcc-cccCchhHHHHHHhccCceEEEecccchhhhhhhcC-----CceeecceecCCCcccccCC---chhhcccc
Q psy16206 588 ESSRPSV-FVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC-----DLMQVGGLLDSKGYGIAMPT---SKFLAKFS 658 (821)
Q Consensus 588 ~~~~~~~-~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~k---~~l~~~in 658 (821)
......+ +.-+++.++.+|.+ |++|+...+...........+ +++++.....--+..+++++ ++++++|-
T Consensus 174 ~~~f~~v~~~G~H~~a~~aV~n-G~vDva~~~~~~~~~~~~~~~~~~~~~l~vi~~S~~iP~~pi~vr~~L~~~~k~kl~ 252 (299)
T COG3221 174 DKFFGEVIFSGGHDAAVLAVAN-GQVDVAAVNSSARGLLKKAAPEGVAEKLRVIWKSPLIPNDPIAVRSDLPADLKEKLR 252 (299)
T ss_pred hhhhceeeccChHHHHHHHHHc-CCceEEeccHHHHhhhhhcccccchhhceEEEecCCCCCCCEEEeCCCCHHHHHHHH
Confidence 0011122 33348999999999 999999988888777766542 56666655445566788888 88999999
Q ss_pred cceeEEEE
Q psy16206 659 FGFAKLRV 666 (821)
Q Consensus 659 ~al~~l~~ 666 (821)
+++..+.+
T Consensus 253 ~af~~l~~ 260 (299)
T COG3221 253 DAFLDLAK 260 (299)
T ss_pred HHHHhcCc
Confidence 99988865
No 216
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=94.22 E-value=8.7 Score=41.15 Aligned_cols=197 Identities=10% Similarity=-0.002 Sum_probs=96.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
.||++.+... ..+..+++-+.++ .+ + ..+++.+.+ .++....+....++.++|++||= |..+..
T Consensus 26 ~Igvv~~~~~~~f~~~~~~gi~~~a~~---~g-----~--~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 94 (330)
T PRK15395 26 RIGVTIYKYDDNFMSVVRKAIEKDAKA---AP-----D--VQLLMNDSQ-NDQSKQNDQIDVLLAKGVKALAINLVDPAA 94 (330)
T ss_pred eEEEEEecCcchHHHHHHHHHHHHHHh---cC-----C--eEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEeccCHHH
Confidence 5888887433 3333344433333 32 2 344445533 45555556666777778888774 333322
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC------------CCCEEEEEEecCC
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM------------DWDTFTIIYETHD 144 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~------------~w~~v~ii~~~~~ 144 (821)
.......+...++|+|.....+.. ..-...+-...+..++...++.+++.+..+ |-.+++++.....
T Consensus 95 ~~~~l~~l~~~giPvV~vd~~~~~-~~~~~~~~~~~V~~D~~~ag~~a~~~l~~~~~~~~~~~~~~~g~~~i~~i~g~~~ 173 (330)
T PRK15395 95 APTVIEKARGQDVPVVFFNKEPSR-KALDSYDKAYYVGTDSKESGIIQGDLIAKHWKANPAWDLNKDGKIQYVLLKGEPG 173 (330)
T ss_pred HHHHHHHHHHCCCcEEEEcCCccc-cccccccceeEEccChHHHHHHHHHHHHHHHhhccccccCCCCceEEEEEecCCC
Confidence 333334466789999998653221 000001112335566666666555544432 3333444543221
Q ss_pred ---chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCC---CChHHHHHHhhcC----CCcEEEEeCChhHHHHHHHHHH
Q psy16206 145 ---NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDT---DDYRPLLKEIKNS----SESHILLDCSMDKTVTILKQAK 214 (821)
Q Consensus 145 ---~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~---~d~~~~l~~lk~~----~~~~ivl~~~~~~~~~~l~~a~ 214 (821)
...+.+.+.+... .+|..+......... .+-...++++.+. .+++|+ .++...+..++++++
T Consensus 174 ~~~~~~R~~G~~~al~-------~~g~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ai~-~~~d~~A~gvl~al~ 245 (330)
T PRK15395 174 HPDAEARTTYVIKELN-------DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI-ANNDAMAMGAVEALK 245 (330)
T ss_pred CchHHHHHHHHHHHHH-------hcCCCeeeeecccCCcCHHHHHHHHHHHHhhCcCCCeeEEE-ECCchHHHHHHHHHH
Confidence 2223333333333 234443322222111 1223455555433 234444 555666778999999
Q ss_pred Hccc
Q psy16206 215 EVHL 218 (821)
Q Consensus 215 ~~g~ 218 (821)
+.|+
T Consensus 246 ~~Gl 249 (330)
T PRK15395 246 AHNK 249 (330)
T ss_pred hcCC
Confidence 9987
No 217
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds.
Probab=93.69 E-value=0.49 Score=50.54 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcC-CeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccch------------hhhcceee
Q psy16206 441 SVDLIKMIANELN-FTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITS------------ERRAAVDF 507 (821)
Q Consensus 441 ~~dll~~ia~~l~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~------------~R~~~~~f 507 (821)
..++.+.++++++ ++++++.. +.....+..|.+|++|+++....... .+.+.+..
T Consensus 47 ~~~la~~~~~~~~~i~v~~~~~------------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (320)
T TIGR02122 47 GGAIAQLINKKSGKLRVRVQST------------GGSVENVNLLEAGEADLAIVQSDVAYYAYEGDGEFEFEGPVEKLRA 114 (320)
T ss_pred HHHHHHHHhccCCCeeEEEEeC------------cchHHHHHHHhCCCCcEEEEcchhHHHHhcCcCccccCCCCccHHh
Confidence 3567788888887 77777742 24567899999999999976533211 11122332
Q ss_pred cccceeeceEEEEEcCCC
Q psy16206 508 TMPFMTLGISILYRKPAK 525 (821)
Q Consensus 508 S~p~~~~~~~l~~~~~~~ 525 (821)
..+++.....++++++.+
T Consensus 115 v~~~~~~~~~lvv~~d~~ 132 (320)
T TIGR02122 115 LASLYPEYIQIVVRKDSG 132 (320)
T ss_pred HHHhccccEEEEEECCCC
Confidence 335566677788887755
No 218
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=93.66 E-value=6.6 Score=41.60 Aligned_cols=184 Identities=7% Similarity=-0.031 Sum_probs=96.6
Q ss_pred cEEEEeCCCc-hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcchHHH
Q psy16206 2 KIVGIFGPNE-EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIENRNI 79 (821)
Q Consensus 2 ~IG~i~~~~~-~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~~~~ 79 (821)
.||++++.-. .-....++-..+...+. |+.+ .+..++ .++....+....+...+|+++|- |.......
T Consensus 61 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~------gy~~--~i~~~~-~~~~~~~~~~~~l~~~~vdGvIi~~~~~~~~~- 130 (311)
T TIGR02405 61 VVAVIVSRLDSPSENLAVSGMLPVFYTA------GYDP--IIMESQ-FSPQLTNEHLSVLQKRNVDGVILFGFTGCDEE- 130 (311)
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHC------CCeE--EEecCC-CChHHHHHHHHHHHhcCCCEEEEeCCCCCCHH-
Confidence 4888887422 11112222222233333 3343 344423 45555445555566668887773 32212222
Q ss_pred HHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEec-CC---c---hhHHHHH
Q psy16206 80 IESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYET-HD---N---LVYLQQV 152 (821)
Q Consensus 80 v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~-~~---~---~~~~~~~ 152 (821)
.....++|++..... . . . +-.+.+++..-+..+++.+...|.++++++..+ .+ . ..++++.
T Consensus 131 ---~l~~~~~p~V~i~~~-~----~-~---~~~V~~D~~~~~~~a~~~L~~~Ghr~I~~i~~~~~~~~~~~~R~~gf~~a 198 (311)
T TIGR02405 131 ---ILESWNHKAVVIARD-T----G-G---FSSVCYDDYGAIELLMANLYQQGHRHISFLGVDPSDKTTGLMRHNAYLAY 198 (311)
T ss_pred ---HHHhcCCCEEEEecC-C----C-C---ccEEEeCcHHHHHHHHHHHHHcCCCcEEEEccCcccchhHHHHHHHHHHH
Confidence 234567898877531 1 1 1 123566777777788888888999999999632 21 2 2334444
Q ss_pred HHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 153 LENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
+++.+ +............+....++++.+.+++.|+ +++...+..+++.+.++|+
T Consensus 199 ~~~~g----------i~~~~~~~~~~~~~~~~~~~~~l~~~~tAi~-~~~D~~A~g~~~~l~~~g~ 253 (311)
T TIGR02405 199 CESAN----------LEPIYQTGQLSHESGYVLTDKVLKPETTALV-CATDTLALGAAKYLQELDR 253 (311)
T ss_pred HHHcC----------CCceeeeCCCCHHHHHHHHHHHHhcCCCEEE-ECCcHHHHHHHHHHHHcCC
Confidence 44443 3211111111112223345554444677665 5566777788999999996
No 219
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=93.56 E-value=11 Score=39.63 Aligned_cols=193 Identities=13% Similarity=0.031 Sum_probs=101.6
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
+||++.+... ..+..+++-+.++ . |+.+ .+.+.+ .+...-.+....+...+|++||= |....
T Consensus 37 ~ig~v~~~~~~~~~~~~~~gi~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~i~~l~~~~vDgiIi~~~~~~- 103 (309)
T PRK11041 37 TILVIVPDICDPFFSEIIRGIEVTAAE---H------GYLV--LIGDCA-HQNQQEKTFVNLIITKQIDGMLLLGSRLP- 103 (309)
T ss_pred EEEEEeCCCcCccHHHHHHHHHHHHHH---C------CCEE--EEEeCC-CChHHHHHHHHHHHHcCCCEEEEecCCCC-
Confidence 5899988543 3344455544443 2 2233 334423 45555555666677778887773 32211
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQ 150 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~ 150 (821)
..... .......|++....... ....+ .+..++...+..+++.+...|.++++++..... . ...++
T Consensus 104 ~~~~~-~~~~~~~pvv~~~~~~~----~~~~~---~V~~Dn~~~g~~a~~~l~~~G~~~I~~l~~~~~~~~~~~R~~Gf~ 175 (309)
T PRK11041 104 FDASK-EEQRNLPPMVMANEFAP----ELELP---TVHIDNLTAAFEAVNYLHELGHKRIACIAGPEEMPLCHYRLQGYV 175 (309)
T ss_pred hHHHH-HHHhcCCCEEEEccccC----CCCCC---EEEECcHHHHHHHHHHHHHcCCceEEEEeCCccccchHHHHHHHH
Confidence 11111 12222246766543221 11122 355677777788888888889999999975432 1 33444
Q ss_pred HHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcceEE
Q psy16206 151 QVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDYQNY 225 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~ 225 (821)
+.+++.+ ..+. ..............++++.+. .+++|+. ++...+..+++++++.|+.-+.-.+
T Consensus 176 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~gv~~al~~~g~~ip~di~ 244 (309)
T PRK11041 176 QALRRCG----------ITVDPQYIARGDFTFEAGAKALKQLLDLPQPPTAVFC-HSDVMALGALSQAKRMGLRVPQDLS 244 (309)
T ss_pred HHHHHcC----------CCCCHHHeEeCCCCHHHHHHHHHHHHcCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCcceE
Confidence 4554443 2221 111111122334455666544 3566664 5566666788999999975433333
Q ss_pred E
Q psy16206 226 I 226 (821)
Q Consensus 226 i 226 (821)
+
T Consensus 245 v 245 (309)
T PRK11041 245 I 245 (309)
T ss_pred E
Confidence 3
No 220
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A.
Probab=92.40 E-value=0.87 Score=46.73 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=45.6
Q ss_pred HHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccc---cchhhhc-----ceeecccceeeceE
Q psy16206 446 KMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLT---ITSERRA-----AVDFTMPFMTLGIS 517 (821)
Q Consensus 446 ~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~---~t~~R~~-----~~~fS~p~~~~~~~ 517 (821)
+.+.++.|++++++.++ ++..++.++..|++|++.. .. .-..+-. .+..-......+..
T Consensus 27 ~g~f~~~G~~ve~~~~~------------~g~~~~~al~~G~iD~a~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 93 (252)
T PF13379_consen 27 KGLFEKEGLDVEWVQFA------------SGADILEALAAGEIDIAFV-LAPALIAIAKGAGGPDVDIVVLAGLSQNGNA 93 (252)
T ss_dssp TTHHHHTTSCEEEEEES------------SHHHHHHHHHCTSSSEEEE-CTHHHHHHHTTTTT----EEEEEECSBSSEE
T ss_pred cChHHHcCCEEEEEEcC------------CHHHHHHHHHcCCCCEEEe-chHHHHHHHcCCCCcccceEEeeccCCCceE
Confidence 45677889999999876 7899999999999999865 22 1122322 23333345567788
Q ss_pred EEEEcC
Q psy16206 518 ILYRKP 523 (821)
Q Consensus 518 l~~~~~ 523 (821)
++++.+
T Consensus 94 lvv~~~ 99 (252)
T PF13379_consen 94 LVVRND 99 (252)
T ss_dssp EEECGG
T ss_pred EEEcCc
Confidence 888874
No 221
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=90.61 E-value=13 Score=38.20 Aligned_cols=139 Identities=12% Similarity=0.050 Sum_probs=76.4
Q ss_pred hcCeEEEE--cCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEE
Q psy16206 62 SEGIAAIF--GPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTII 139 (821)
Q Consensus 62 ~~~V~aii--Gp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii 139 (821)
.++|+++| ++. +. ..+ ..+...++|+|....... ....+ .+..++...+..+++.+...|-++++++
T Consensus 50 ~~~vdgii~~~~~-~~--~~~-~~~~~~~~pvV~~~~~~~----~~~~~---~v~~D~~~a~~~~~~~l~~~g~~~i~~i 118 (270)
T cd01544 50 LEDVDGIIAIGKF-SQ--EQL-AKLAKLNPNLVFVDSNPA----PDGFD---SVVPDFEQAVEKALDYLLELGHTRIGFI 118 (270)
T ss_pred ccCcCEEEEecCC-CH--HHH-HHHHhhCCCEEEECCCCC----CCCCC---EEEECHHHHHHHHHHHHHHcCCCcEEEE
Confidence 44666665 333 22 333 345567899998854322 11122 3666777778888888888999999999
Q ss_pred EecCC--------c---hhHHHHHHHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcC----CCcEEEEeCCh
Q psy16206 140 YETHD--------N---LVYLQQVLENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNS----SESHILLDCSM 203 (821)
Q Consensus 140 ~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~----~~~~ivl~~~~ 203 (821)
..... . ...+.+.+.+.+ . .... ...-..+..+....++++.+. .+++|+ +++.
T Consensus 119 ~~~~~~~~~~~~~~~~R~~gf~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d 188 (270)
T cd01544 119 GGEEKTTDGHEYIEDPRETAFREYMKEKG-------L--YDPELIYIGDFTVESGYQLMKEALKSLGDNLPTAFF-IASD 188 (270)
T ss_pred CCCcccccccchhhhHHHHHHHHHHHHcC-------C--CChheEeeCCCCHHHHHHHHHHHHhccCCCCCCEEE-EcCc
Confidence 76431 1 233344444433 1 1111 111111112223444454333 245444 4567
Q ss_pred hHHHHHHHHHHHccccCc
Q psy16206 204 DKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 204 ~~~~~~l~~a~~~g~~~~ 221 (821)
..+..+++.+++.|+.-+
T Consensus 189 ~~a~g~~~~l~~~g~~vp 206 (270)
T cd01544 189 PMAIGALRALQEAGIKVP 206 (270)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 778889999999998644
No 222
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=88.53 E-value=7.6 Score=39.92 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=62.8
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
|||.|..... .....|+...++..|.+ .++...+.. +..|+.++.+.+..|+.+|+++|++.. + ..
T Consensus 122 kVG~I~g~~~~~~~~~~~gF~~G~~~~~p~-------~~v~~~~~g-~~~D~~~a~~~a~~l~~~G~DvI~~~~-~--~~ 190 (258)
T cd06353 122 KVGYVAAFPIPEVVRGINAFALGARSVNPD-------ATVKVIWTG-SWFDPAKEKEAALALIDQGADVIYQHT-D--SP 190 (258)
T ss_pred cEEEEcCcccHHHHHHHHHHHHHHHHHCCC-------cEEEEEEec-CCCCcHHHHHHHHHHHHCCCcEEEecC-C--Ch
Confidence 5788877655 44567888888887743 344444443 457999999999999999999888877 2 24
Q ss_pred HHHHHhccCCCceeeeccCC
Q psy16206 79 IIESMCQMFDIPHVEAFWDP 98 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~ 98 (821)
.+...+.+.++..|.+..+.
T Consensus 191 g~~~aa~~~g~~~IG~d~dq 210 (258)
T cd06353 191 GVIQAAEEKGVYAIGYVSDM 210 (258)
T ss_pred HHHHHHHHhCCEEEeeccch
Confidence 55667778899999886443
No 223
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein. Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.
Probab=87.77 E-value=0.33 Score=50.61 Aligned_cols=107 Identities=20% Similarity=0.195 Sum_probs=68.3
Q ss_pred CCccceecchHHHHHhhcCce-EEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFT-YKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVST 758 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 758 (821)
|+..|+..|+++.+.+++|.+ .++.. ..|..++..+.++..+.++. +.+ .| .
T Consensus 52 g~~~G~~~dl~~~i~~~lg~~~~~~~~-------------~~w~~~~~~l~~G~~Di~~~~~~~---------t~----e 105 (275)
T TIGR02995 52 GKVSGAAPDVARAIFKRLGIADVNASI-------------TEYGALIPGLQAGRFDAIAAGLFI---------KP----E 105 (275)
T ss_pred CceecchHHHHHHHHHHhCCCceeecc-------------CCHHHHHHHHHCCCcCEEeecccC---------CH----H
Confidence 456799999999999999986 33321 24888888888886664321 111 11 2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCccccccc
Q psy16206 759 RLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820 (821)
Q Consensus 759 r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~ 820 (821)
|--.. .|+ ...|+... ++++.......|++++||..+++.++|++.+++...+++
T Consensus 106 R~~~~---~fs---~py~~~~~-~~~~~~~~~~~i~~~~dl~~~~g~~Igv~~g~~~~~~l~ 160 (275)
T TIGR02995 106 RCKQV---AFT---QPILCDAE-ALLVKKGNPKGLKSYKDIAKNPDAKIAAPGGGTEEKLAR 160 (275)
T ss_pred HHhcc---ccc---cceeecce-eEEEECCCCCCCCCHHHhccCCCceEEEeCCcHHHHHHH
Confidence 22111 111 12233332 355555544568999999877789999999998876653
No 224
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=85.60 E-value=17 Score=37.52 Aligned_cols=150 Identities=9% Similarity=-0.024 Sum_probs=81.1
Q ss_pred HhhcCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEE
Q psy16206 60 ATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTII 139 (821)
Q Consensus 60 li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii 139 (821)
+...+|+++|-.........+.. +...++|+|........ ....+ .+..++...+..+++.+...|.++++++
T Consensus 52 l~~~~vdgiIi~~~~~~~~~~~~-l~~~~iPvV~i~~~~~~---~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i 124 (269)
T cd06287 52 LDALDIDGAILVEPMADDPQVAR-LRQRGIPVVSIGRPPGD---RTDVP---YVDLQSAATARMLLEHLRAQGARQIALI 124 (269)
T ss_pred hhccCcCeEEEecCCCCCHHHHH-HHHcCCCEEEeCCCCCC---CCCCC---eEeeCcHHHHHHHHHHHHHcCCCcEEEE
Confidence 33448887663211112233333 45569999988543210 11122 2345566666777888888899999999
Q ss_pred EecCC---c---hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcC--CCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHH
Q psy16206 140 YETHD---N---LVYLQQVLENAHDDDKEIRPGRPSVTIRQLP--PDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTI 209 (821)
Q Consensus 140 ~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~--~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~ 209 (821)
..... . ...+++.+++.+ ......... .+..+-...++++.+. .+++|+ +.+...+..+
T Consensus 125 ~~~~~~~~~~~R~~gf~~a~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~gv 193 (269)
T cd06287 125 VGSARRNSYLEAEAAYRAFAAEHG----------MPPVVLRVDEAGGEEAGYAACAQLLAQHPDLDALC-VPVDAFAVGA 193 (269)
T ss_pred eCCcccccHHHHHHHHHHHHHHcC----------CCcceeEecCCCChHHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHH
Confidence 64332 2 334445555443 222111111 1112223455555443 356555 4456778889
Q ss_pred HHHHHHccccCcceEEEE
Q psy16206 210 LKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 210 l~~a~~~g~~~~~~~~i~ 227 (821)
++.+++.|+.-+.-.-++
T Consensus 194 l~al~~~gl~vP~dvsvi 211 (269)
T cd06287 194 VRAATELGRAVPDQLRVV 211 (269)
T ss_pred HHHHHHcCCCCCCceEEE
Confidence 999999998755434343
No 225
>PRK11260 cystine transporter subunit; Provisional
Probab=85.28 E-value=0.52 Score=48.86 Aligned_cols=103 Identities=18% Similarity=0.293 Sum_probs=64.0
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++++|++++++.. .|..+...+.++..+.++. ..+ .| .|
T Consensus 61 g~~~G~~~dl~~~i~~~lg~~~e~~~~-------------~~~~~~~~l~~G~~D~~~~~~~~---------~~----~r 114 (266)
T PRK11260 61 GKLTGFEVEFAEALAKHLGVKASLKPT-------------KWDGMLASLDSKRIDVVINQVTI---------SD----ER 114 (266)
T ss_pred CCEEEehHHHHHHHHHHHCCeEEEEeC-------------CHHHHHHHHhcCCCCEEEecccc---------CH----HH
Confidence 567899999999999999999998752 2778888888777765431 111 11 12
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
--... |+ ...+..+.. +++......+|++++||. +.++|+..|+....++
T Consensus 115 ~~~~~---fs---~p~~~~~~~-~~~~~~~~~~~~~~~dL~---g~~Igv~~G~~~~~~l 164 (266)
T PRK11260 115 KKKYD---FS---TPYTVSGIQ-ALVKKGNEGTIKTAADLK---GKKVGVGLGTNYEQWL 164 (266)
T ss_pred Hhccc---cC---CceeecceE-EEEEcCCcCCCCCHHHcC---CCEEEEecCCcHHHHH
Confidence 11111 11 011112222 233333345799999996 4799999988766654
No 226
>PRK07377 hypothetical protein; Provisional
Probab=84.73 E-value=2.2 Score=39.99 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=38.2
Q ss_pred eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEe
Q psy16206 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAIC 493 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~ 493 (821)
+-.++.++.+.++.+.++|++.++ +-..+.+++..|++|++++
T Consensus 93 ~~l~~~l~~~~~~y~~rlElv~y~------------~~~~l~~aL~~~eVh~~c~ 135 (184)
T PRK07377 93 DQLIDQLRTILDKYHLRLELVVYP------------DLQALEQALRDKEVHAICL 135 (184)
T ss_pred HHHHHHHHHHHHHhCceeeEEecC------------CHHHHHHHHhcCCccEEec
Confidence 557788899999999999999987 6788999999999999854
No 227
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=83.93 E-value=1.5 Score=46.70 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=38.0
Q ss_pred eeeeee-cCCCceeecCCCCCceeeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEE
Q psy16206 417 KLRVLF-QGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAI 492 (821)
Q Consensus 417 ~lrVgv-~~~P~~~~~~~~~~~~G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~ 492 (821)
+||||+ .|+.|....- +-.--++++-.++.|++++++.++ +...++.++..|++|++.
T Consensus 3 ~~~i~~~~w~G~~p~~l------A~~~G~fe~~l~~~Gl~Ve~~~f~------------~~~~~l~Al~aG~iD~~~ 61 (328)
T TIGR03427 3 KFKVCWSIYAGWMPWGY------AAQQGIVDKWADKYGITIEVVQIN------------DYVESINQYTAGKFDGCT 61 (328)
T ss_pred ceEEEecCCccHHHHHH------HHHcCchhhhHHHcCCeEEEEECC------------ChHHHHHHHHcCCCCEEe
Confidence 455555 6776654100 111124444456779999999876 577899999999999964
No 228
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=83.35 E-value=55 Score=33.22 Aligned_cols=201 Identities=16% Similarity=0.106 Sum_probs=103.2
Q ss_pred cEEEEeCCCc--hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEec-CCChhHHHHHHHHHhhc-CeEEEEcCC-Ccch
Q psy16206 2 KIVGIFGPNE--EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVE-NYDSLHTAKLMCNATSE-GIAAIFGPQ-SIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~--~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~-~~~~~~a~~~a~~li~~-~V~aiiGp~-~s~~ 76 (821)
|||++..... +...+|++..++.-... .|..+++=.+ ...-.........|... .+.|||=.. -+..
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~--------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt 75 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV--------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVPGT 75 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH--------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS---
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc--------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCcch
Confidence 7999988665 55556666666654432 3444444212 12334444555566667 888888433 3345
Q ss_pred HHHHHHHhc-cCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC-c---hhHHHH
Q psy16206 77 RNIIESMCQ-MFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD-N---LVYLQQ 151 (821)
Q Consensus 77 ~~~v~~i~~-~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~-~---~~~~~~ 151 (821)
+.+...+=+ +-.|.+|+. .+..-.......-=+-+.+.....+..++...+.+|-++|+-+....+ . ...-++
T Consensus 76 ~~af~kIkekRpDIl~ia~--~~~EDp~~i~~~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms~~~l~~Rr~ 153 (275)
T PF12683_consen 76 AEAFRKIKEKRPDILLIAG--EPHEDPEVISSAADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMSYELLARRRD 153 (275)
T ss_dssp HHHHHHHHHH-TTSEEEES--S--S-HHHHHHHSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGGSHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEcC--CCcCCHHHHhhccCeEeccchhhccHHHHHHHHHcCCceEEEEechhhcchHHHHHHHH
Confidence 566655543 355666653 333200000111124455777778889999999999999998865554 2 222223
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCC--h--------HHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDD--Y--------RPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d--~--------~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
.+++.- +..|+......-|...+| . ...-+.+++.+.+.-++++.......+++++.+.|.
T Consensus 154 ~M~~~C------~~lGi~fv~~taPDP~sd~gv~gaqqfIlE~vp~~i~kYGkdtaff~TN~a~~epllk~~~~~g~ 224 (275)
T PF12683_consen 154 IMEEAC------KDLGIKFVEVTAPDPTSDVGVAGAQQFILEDVPKWIKKYGKDTAFFCTNDAMTEPLLKQALEYGG 224 (275)
T ss_dssp HHHHHH------HHCT--EEEEEE---SSTCHHHHHHHHHHHHHHHHHHHH-S--EEEESSHHHHHHHHHHHHHH--
T ss_pred HHHHHH------HHcCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCceeEEecCccccHHHHHHHHHcCC
Confidence 333321 134666665554432233 1 223355777799999999999999999999999875
No 229
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family. Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulfur from aliphatic sulfonates. Related proteins outside the scope of this model include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulfate ester binding protein AtsR, and the probable aromatic sulfonate binding protein AsfC. All these families make sulfur available when Cys and sulfate levels are low. Please note that phylogenetic analysis by neighbor-joining suggests that a number of sequences belonging to this family have been excluded because of scoring lower than taurine-binding proteins.
Probab=83.06 E-value=5.9 Score=41.24 Aligned_cols=68 Identities=12% Similarity=-0.036 Sum_probs=39.7
Q ss_pred HHHHHHcC--CeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccc-hhhhcceeecc--ccee-eceEEE
Q psy16206 446 KMIANELN--FTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT-SERRAAVDFTM--PFMT-LGISIL 519 (821)
Q Consensus 446 ~~ia~~l~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t-~~R~~~~~fS~--p~~~-~~~~l~ 519 (821)
+-+.++.| ++++++..+ ++..++.+|.+|++|+++.+.... ..+.+..++.. .+.. ....++
T Consensus 19 ~g~f~~~g~~l~v~~~~~~------------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~v 86 (288)
T TIGR01728 19 KGLLEKELGKTKVEWVEFP------------AGPPALEALGAGSLDFGYIGPGPALFAYAAGADIKAVGLVSDNKATAIV 86 (288)
T ss_pred hCHHHHhhCCceEEEEecC------------CCcHHHHHHhcCCccccccCCcHHHHHHhcCCCEEEEEEecCCCceEEE
Confidence 34445556 888888653 567899999999999986544311 12222222221 1112 467777
Q ss_pred EEcCCC
Q psy16206 520 YRKPAK 525 (821)
Q Consensus 520 ~~~~~~ 525 (821)
++++.+
T Consensus 87 ~~~~~~ 92 (288)
T TIGR01728 87 VIKGSP 92 (288)
T ss_pred ECCCCC
Confidence 776644
No 230
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ. This predicted periplasmic protein, called MoxJ or MxaJ, is required for methanol oxidation in Methylobacterium extorquens. Two differing lines of evidence suggest two different roles. Forming one view, homology suggests it is the substrate-binding protein of an ABC transporter associated with methanol oxidation. The gene, furthermore, is found regular in genomes with, and only two or three genes away from, a corresponding permease and ATP-binding cassette gene pair. The other view is that this protein is an accessory factor or additional subunit of methanol dehydrogenase itself. Mutational studies show a dependence on this protein for expression of the PQQ-dependent, two-subunit methanol dehydrogenase (MxaF and MxaI) in Methylobacterium extorquens, as if it is a chaperone for enzyme assembly or a third subunit. A homologous N-terminal sequence was found in Paracoccus denitrificans as a 32Kd third subunit. This protein may, in
Probab=82.94 E-value=0.65 Score=47.48 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=61.2
Q ss_pred cceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhH---HHHhhccceeeeehhhhhhhhhhcccccccccch
Q psy16206 684 YGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLI---GELQEQVDTFILFFIYSILFFIYTFVNEAVSTRL 760 (821)
Q Consensus 684 ~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 760 (821)
.||..|+.+.+++++|++++++.. .|.+++ ..+..+..+.+..+. .+| .|+
T Consensus 19 ~Gfdvdl~~~ia~~lg~~~~~~~~-------------~~~~~~~~~~~L~~g~~Dii~~~~---------~t~----~r~ 72 (246)
T TIGR03870 19 SGFENKIAAALAAAMGRKVVFVWL-------------AKPAIYLVRDGLDKKLCDVVLGLD---------TGD----PRV 72 (246)
T ss_pred CcchHHHHHHHHHHhCCCeEEEEe-------------ccchhhHHHHHHhcCCccEEEeCC---------CCh----HHH
Confidence 699999999999999999998853 255554 355555455433221 122 342
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhh--hhhcCce-eEEEEecCcccccc
Q psy16206 761 VAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVED--LAKAGRI-KYGCVEMGSTRNFF 819 (821)
Q Consensus 761 ~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~d--L~~~~~~-~~~~~~~~~~~~~~ 819 (821)
. +..-|-.+=..+++.......|++++| |. +. ++|+..+|+.+.++
T Consensus 73 ~----------fS~PY~~~~~~~v~~k~~~~~~~~~~d~~L~---g~~~vgv~~gs~~~~~l 121 (246)
T TIGR03870 73 L----------TTKPYYRSSYVFLTRKDRNLDIKSWNDPRLK---KVSKIGVIFGSPAETML 121 (246)
T ss_pred h----------cccCcEEeeeEEEEeCCCCCCCCCccchhhc---cCceEEEecCChHHHHH
Confidence 1 133343333445555544457999876 65 45 99999999776654
No 231
>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B.
Probab=82.73 E-value=5.3 Score=39.73 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=44.9
Q ss_pred ce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEecc-cc------chhhhcceeec
Q psy16206 437 LY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDL-TI------TSERRAAVDFT 508 (821)
Q Consensus 437 ~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~-~~------t~~R~~~~~fS 508 (821)
.| |+.--|-+.+.+ .++++.+.... .-...+++|.+|.+|+++.+- +- ....+-.+.|-
T Consensus 25 ~YEGLATGl~~~f~~-~~ip~~~aymR------------Ga~~Rie~l~~g~yDfaVvS~lAA~~~i~~~~~l~i~~~fG 91 (232)
T PF14503_consen 25 RYEGLATGLYEQFEE-SGIPLNFAYMR------------GAENRIEALKNGRYDFAVVSKLAAEHYIEEGEDLEIVLEFG 91 (232)
T ss_dssp HHHHHHHHHHCTTT---TS-EEEEE-S-------------HHHHHHHHHTTS-SEEEEEHHHHCCCCCC-SSEEEEEE--
T ss_pred hhHHHHHHHHHHhcc-CCCceEEEeec------------cchHHHHHHHhCCcceEeehHHHHHHHHhhccCeEEEEeeC
Confidence 56 998888888765 88888887764 346689999999999998641 11 11223346777
Q ss_pred ccceeeceEEEEEcCCC
Q psy16206 509 MPFMTLGISILYRKPAK 525 (821)
Q Consensus 509 ~p~~~~~~~l~~~~~~~ 525 (821)
.--+.++-+++.+.+..
T Consensus 92 ~~sYvs~Hvli~~~~~~ 108 (232)
T PF14503_consen 92 PGSYVSEHVLIFRDGEK 108 (232)
T ss_dssp TTSSS--EEEEEETT-G
T ss_pred CCCcccceEEEEecCCc
Confidence 65556677777777654
No 232
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=81.97 E-value=27 Score=33.42 Aligned_cols=133 Identities=15% Similarity=0.133 Sum_probs=81.1
Q ss_pred EEEEEEEecCCChhHHHHHHHHH-hhcCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecC
Q psy16206 38 LEPIVQHVENYDSLHTAKLMCNA-TSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPE 116 (821)
Q Consensus 38 l~~~~~D~~~~~~~~a~~~a~~l-i~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~ 116 (821)
+++.+.+ ++-..++..+.++ ..+|+.+||.-.. ...-+-+..++|+|... ++
T Consensus 10 ~~i~v~~---~~~e~~v~~a~~~~~~~g~dViIsRG~-----ta~~lr~~~~iPVV~I~-------------------~s 62 (176)
T PF06506_consen 10 AEIDVIE---ASLEEAVEEARQLLESEGADVIISRGG-----TAELLRKHVSIPVVEIP-------------------IS 62 (176)
T ss_dssp SEEEEEE-----HHHHHHHHHHHHTTTT-SEEEEEHH-----HHHHHHCC-SS-EEEE----------------------
T ss_pred ceEEEEE---ecHHHHHHHHHHhhHhcCCeEEEECCH-----HHHHHHHhCCCCEEEEC-------------------CC
Confidence 5566666 6778899999999 6679999996432 22234556688888763 22
Q ss_pred hhhHHHHHHHHHHhCCCCEEEEEEecCC--chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCC
Q psy16206 117 SHLISKGISVIINDMDWDTFTIIYETHD--NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSE 194 (821)
Q Consensus 117 ~~~~~~al~~~~~~~~w~~v~ii~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~ 194 (821)
.....+++... +.++ ++++++..... +...+.+++ + ..+....+.. ..|+...+++++..+.
T Consensus 63 ~~Dil~al~~a-~~~~-~~Iavv~~~~~~~~~~~~~~ll---~----------~~i~~~~~~~-~~e~~~~i~~~~~~G~ 126 (176)
T PF06506_consen 63 GFDILRALAKA-KKYG-PKIAVVGYPNIIPGLESIEELL---G----------VDIKIYPYDS-EEEIEAAIKQAKAEGV 126 (176)
T ss_dssp HHHHHHHHHHC-CCCT-SEEEEEEESS-SCCHHHHHHHH---T-----------EEEEEEESS-HHHHHHHHHHHHHTT-
T ss_pred HhHHHHHHHHH-HhcC-CcEEEEecccccHHHHHHHHHh---C----------CceEEEEECC-HHHHHHHHHHHHHcCC
Confidence 22344555553 3444 89999887664 445555544 3 4466566644 5789999999999999
Q ss_pred cEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 195 SHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 195 ~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
++|+-.. ...+.|.+.|+.
T Consensus 127 ~viVGg~------~~~~~A~~~gl~ 145 (176)
T PF06506_consen 127 DVIVGGG------VVCRLARKLGLP 145 (176)
T ss_dssp -EEEESH------HHHHHHHHTTSE
T ss_pred cEEECCH------HHHHHHHHcCCc
Confidence 9888443 235667788874
No 233
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=81.76 E-value=1.2 Score=45.36 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=63.2
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeee-ehhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFIL-FFIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++++|.+++++.. .|..++..+.++..+.++ .+. ....|
T Consensus 44 g~~~G~~vdl~~~ia~~lg~~~~~~~~-------------~~~~~~~~l~~G~vDi~~~~~~-------------~t~~R 97 (247)
T PRK09495 44 DKYVGFDIDLWAAIAKELKLDYTLKPM-------------DFSGIIPALQTKNVDLALAGIT-------------ITDER 97 (247)
T ss_pred CceEEEeHHHHHHHHHHhCCceEEEeC-------------CHHHHHHHHhCCCcCEEEecCc-------------cCHHH
Confidence 567899999999999999999988642 388888888887766432 111 11122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
--... |+ ...|.... +++ +++...++++++||.. .++|+..+++...+.
T Consensus 98 ~~~~~---fs---~p~~~~~~-~~~-~~~~~~~~~~~~dL~g---~~I~v~~g~~~~~~l 146 (247)
T PRK09495 98 KKAID---FS---DGYYKSGL-LVM-VKANNNDIKSVKDLDG---KVVAVKSGTGSVDYA 146 (247)
T ss_pred Hhhcc---cc---chheecce-EEE-EECCCCCCCChHHhCC---CEEEEecCchHHHHH
Confidence 11111 11 11122221 222 2344557999999974 689999988766543
No 234
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=78.34 E-value=22 Score=35.12 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccch-hhhcceeec---ccceeece
Q psy16206 441 SVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITS-ERRAAVDFT---MPFMTLGI 516 (821)
Q Consensus 441 ~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~-~R~~~~~fS---~p~~~~~~ 516 (821)
-+-.-+-+-++.|++++++... +...++.+|..|++|++++....-. .|.+..+.. ..+.....
T Consensus 8 ~vA~~~G~f~~~gl~ve~~~~~------------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 75 (216)
T PF09084_consen 8 YVAQEKGYFKEEGLDVEIVFFG------------GGGDVLEALASGKADIAVAGPDAVLFARAKGADIKIIAASYQSSPN 75 (216)
T ss_dssp HHHHHTTHHHHTTEEEEEEEES------------SHHHHHHHHHTTSHSEEEEECHHHHHHHHTTSTEEEEEEEEEECCE
T ss_pred HHHHHcCCCccCeEEEEEEEec------------ChhHHHHHHhcCCceEEeccchHHHHHHhcCCeeEEEEEecCCCce
Confidence 3333344557779999999764 6788999999999999987554332 444444332 23334566
Q ss_pred EEEEEcCCCCCCCcccccccCc
Q psy16206 517 SILYRKPAKKQPDLFSFLEPLS 538 (821)
Q Consensus 517 ~l~~~~~~~~~~~~~~~l~~~~ 538 (821)
.+++++++. ..+ ...|+..+
T Consensus 76 ~l~~~~~s~-i~~-~~DLkGK~ 95 (216)
T PF09084_consen 76 ALVVRKDSG-IKS-PADLKGKK 95 (216)
T ss_dssp EEEEETTTS--SS-GGGGTTSE
T ss_pred EEEEeccCC-CCC-HHHhCCCE
Confidence 788887765 333 34445444
No 235
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=77.55 E-value=7.7 Score=39.20 Aligned_cols=89 Identities=9% Similarity=0.016 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhCCCCEEEEEEecCC-chhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCC--C----C---CChHHHHHH
Q psy16206 120 ISKGISVIINDMDWDTFTIIYETHD-NLVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPP--D----T---DDYRPLLKE 188 (821)
Q Consensus 120 ~~~al~~~~~~~~w~~v~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~--~----~---~d~~~~l~~ 188 (821)
-+.|+.+.++++|.+|++++..-.+ -...+.+.+++.| +.|... .+.. + . ....+.+++
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G----------~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~ 176 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRG----------FEIVNFTCLGLTDDREMARISPDCIVEAALA 176 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCC----------cEEeeeeccCCCCCceeeecCHHHHHHHHHH
Confidence 4678899999999999999998665 4566677777765 444432 2221 1 1 223444455
Q ss_pred hhcCCCcEEEEeCChhHHHHHHHHHH-Hccc
Q psy16206 189 IKNSSESHILLDCSMDKTVTILKQAK-EVHL 218 (821)
Q Consensus 189 lk~~~~~~ivl~~~~~~~~~~l~~a~-~~g~ 218 (821)
+...++|.|++.|..-.+..++.++. ++|.
T Consensus 177 ~~~~~aDAifisCTnLrt~~vi~~lE~~lGk 207 (239)
T TIGR02990 177 AFDPDADALFLSCTALRAATCAQRIEQAIGK 207 (239)
T ss_pred hcCCCCCEEEEeCCCchhHHHHHHHHHHHCC
Confidence 54668999999999988888888885 4554
No 236
>cd05466 PBP2_LTTR_substrate The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA bin
Probab=76.55 E-value=5 Score=37.95 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=48.1
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.++++.+.++. +.++++... ++..+++.|.+|++|+++..... ..+.+. ..++.....+
T Consensus 13 ~~l~~~i~~~~~~~p~i~i~~~~~-------------~~~~~~~~l~~g~~D~~i~~~~~---~~~~~~-~~~l~~~~~~ 75 (197)
T cd05466 13 YLLPPLLAAFRQRYPGVELSLVEG-------------GSSELLEALLEGELDLAIVALPV---DDPGLE-SEPLFEEPLV 75 (197)
T ss_pred HHhHHHHHHHHHHCCCCEEEEEEC-------------ChHHHHHHHHcCCceEEEEcCCC---CCCcce-EeeeeccceE
Confidence 34467777777665 567777632 45679999999999999864433 223333 4577788888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~~~~~~~~ 83 (197)
T cd05466 76 LVVPPDHP 83 (197)
T ss_pred EEecCCCC
Confidence 88887754
No 237
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional
Probab=76.45 E-value=1.8 Score=44.53 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=61.4
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++++|.+++++.. .|..++..+.++..+.++. +.+ .| .|
T Consensus 46 g~~~G~~vdi~~~ia~~lg~~i~~~~~-------------pw~~~~~~l~~g~~D~~~~~~~~---------t~----eR 99 (259)
T PRK15437 46 GELVGFDIDLAKELCKRINTQCTFVEN-------------PLDALIPSLKAKKIDAIMSSLSI---------TE----KR 99 (259)
T ss_pred CCEEeeeHHHHHHHHHHcCCceEEEeC-------------CHHHHHHHHHCCCCCEEEecCCC---------CH----HH
Confidence 567899999999999999999887642 3888888888777775432 111 11 22
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNF 818 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~ 818 (821)
--... |+ ...|.... .+++ ++..+...+++||. +.++|+.++++.+.+
T Consensus 100 ~~~~~---fs---~p~~~~~~-~~~~-~~~~~~~~~~~dl~---g~~Igv~~g~~~~~~ 147 (259)
T PRK15437 100 QQEIA---FT---DKLYAADS-RLVV-AKNSDIQPTVESLK---GKRVGVLQGTTQETF 147 (259)
T ss_pred hhhcc---cc---chhhcCce-EEEE-ECCCCCCCChHHhC---CCEEEEecCcHHHHH
Confidence 11111 11 12222222 2333 33233334899986 579999999875443
No 238
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=76.06 E-value=1.6 Score=49.63 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=63.7
Q ss_pred ccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeee-ehhhhhhhhhhcccccccccchh
Q psy16206 683 LYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFIL-FFIYSILFFIYTFVNEAVSTRLV 761 (821)
Q Consensus 683 ~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~ 761 (821)
..|+..|+++.+++++|++++++... .|..++..+.++..+++. .+.+ .| .|--
T Consensus 63 ~~G~~~DLl~~ia~~LGv~~e~v~~~------------~~~~ll~aL~~G~iDi~~~~lt~---------T~----eR~~ 117 (482)
T PRK10859 63 PTGFEYELAKRFADYLGVKLEIKVRD------------NISQLFDALDKGKADLAAAGLTY---------TP----ERLK 117 (482)
T ss_pred cccHHHHHHHHHHHHhCCcEEEEecC------------CHHHHHHHHhCCCCCEEeccCcC---------Ch----hhhc
Confidence 47999999999999999999987432 388888888888777432 1111 11 1211
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 762 AGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 762 ~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
... |+ ...|... ..|.+.+..+.+++++||. +.++|+..+|+....+
T Consensus 118 ~~~---FS---~Py~~~~--~~lv~r~~~~~i~~l~dL~---Gk~I~V~~gS~~~~~L 164 (482)
T PRK10859 118 QFR---FG---PPYYSVS--QQLVYRKGQPRPRSLGDLK---GGTLTVAAGSSHVETL 164 (482)
T ss_pred cCc---cc---CCceeee--EEEEEeCCCCCCCCHHHhC---CCeEEEECCCcHHHHH
Confidence 100 11 0111111 1122344457799999997 5799999999876544
No 239
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=75.43 E-value=2 Score=43.74 Aligned_cols=102 Identities=24% Similarity=0.362 Sum_probs=61.6
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++++|.+++++.. .|..+...+.++..+.+.. +. ..+ .|
T Consensus 44 g~~~G~~~dl~~~i~~~lg~~~~~~~~-------------~~~~~~~~l~~G~~D~~~~~~~---------~~~----~r 97 (250)
T TIGR01096 44 GKLVGFDVDLAKALCKRMKAKCKFVEQ-------------NFDGLIPSLKAKKVDAIMATMS---------ITP----KR 97 (250)
T ss_pred CCEEeehHHHHHHHHHHhCCeEEEEeC-------------CHHHHHHHHhCCCcCEEEecCc---------cCH----HH
Confidence 567899999999999999999988652 3777777777776664321 10 011 12
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
-- .+. |+ ...|..... ++ +.+..+.+.+++||. +.++|+..+++...++
T Consensus 98 ~~--~~~-~s---~p~~~~~~~-~~-~~~~~~~~~~~~dl~---g~~i~~~~g~~~~~~l 146 (250)
T TIGR01096 98 QK--QID-FS---DPYYATGQG-FV-VKKGSDLAKTLEDLD---GKTVGVQSGTTHEQYL 146 (250)
T ss_pred hh--ccc-cc---cchhcCCeE-EE-EECCCCcCCChHHcC---CCEEEEecCchHHHHH
Confidence 11 111 11 122232222 22 233344568999997 4689999888776654
No 240
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=75.00 E-value=1.8 Score=44.52 Aligned_cols=101 Identities=15% Similarity=0.317 Sum_probs=61.9
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++.+|++++++.. .|..++..+.++..+.++. +.+ ...|
T Consensus 46 g~~~G~~vdl~~~ia~~lg~~~~~~~~-------------~~~~~~~~l~~g~~Di~~~~~~~-------------t~eR 99 (260)
T PRK15010 46 GDFVGFDIDLGNEMCKRMQVKCTWVAS-------------DFDALIPSLKAKKIDAIISSLSI-------------TDKR 99 (260)
T ss_pred CCEEeeeHHHHHHHHHHhCCceEEEeC-------------CHHHHHHHHHCCCCCEEEecCcC-------------CHHH
Confidence 567899999999999999999988742 3888888888877775432 111 1122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNF 818 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~ 818 (821)
--...| + ...|+.. ..+++ ++..+...+++||. +.++|+.++++...+
T Consensus 100 ~~~~~f---s---~p~~~~~-~~~~~-~~~~~~~~~~~dl~---g~~Igv~~gs~~~~~ 147 (260)
T PRK15010 100 QQEIAF---S---DKLYAAD-SRLIA-AKGSPIQPTLDSLK---GKHVGVLQGSTQEAY 147 (260)
T ss_pred Hhhccc---c---cceEecc-EEEEE-ECCCCCCCChhHcC---CCEEEEecCchHHHH
Confidence 221111 1 1122222 22333 33333334789996 579999999976544
No 241
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=74.77 E-value=34 Score=36.16 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=60.0
Q ss_pred cEEEEe---CCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcc
Q psy16206 2 KIVGIF---GPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~---~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~ 75 (821)
+||.+. .... .....|+...++..|. +.++...+.. +-.||..+.+.+..|+.+|+++|+. .+..
T Consensus 128 ~vg~ig~i~G~~~p~~~~~~~gF~~Ga~~~np-------~i~v~~~~~g-s~~D~~~~~~~a~~li~~GaDvI~~-~ag~ 198 (306)
T PF02608_consen 128 KVGFIGDIGGMDIPPVNRFINGFIAGAKYVNP-------DIKVNVSYTG-SFNDPAKAKEAAEALIDQGADVIFP-VAGG 198 (306)
T ss_dssp EEEEEEEEES--SCTTHHHHHHHHHHHHHTTT-------T-EEEEEE-S-SSS-HHHHHHHHHHHHHTT-SEEEE-E-CC
T ss_pred cccccccccCCCcHhHHHHHHHHHHHHHHhCc-------CceEEEEEcC-CcCchHHHHHHHHHHhhcCCeEEEE-CCCC
Confidence 355555 3333 5678899999999993 3355555555 5679999999999999999999987 3335
Q ss_pred hHHHHHHHhccCCCc--eeeeccCCC
Q psy16206 76 NRNIIESMCQMFDIP--HVEAFWDPN 99 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP--~is~~~~~~ 99 (821)
....+...|.+.+.. .|....+..
T Consensus 199 ~~~gv~~aa~e~g~~~~~IG~d~dq~ 224 (306)
T PF02608_consen 199 SGQGVIQAAKEAGVYGYVIGVDSDQS 224 (306)
T ss_dssp CHHHHHHHHHHHTHETEEEEEES--C
T ss_pred CchHHHHHHHHcCCceEEEEeccccc
Confidence 556677788888888 787755443
No 242
>PRK15007 putative ABC transporter arginine-biding protein; Provisional
Probab=73.10 E-value=2.4 Score=43.09 Aligned_cols=100 Identities=21% Similarity=0.311 Sum_probs=59.1
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeee-ehhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFIL-FFIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++++|++++++.. .|..+...+.++..+.++ .+.+ .| .|
T Consensus 41 g~~~G~~~dl~~~i~~~lg~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~---------~~----~r 94 (243)
T PRK15007 41 NQIVGFDVDLAQALCKEIDATCTFSNQ-------------AFDSLIPSLKFRRVEAVMAGMDI---------TP----ER 94 (243)
T ss_pred CCEEeeeHHHHHHHHHHhCCcEEEEeC-------------CHHHHhHHHhCCCcCEEEEcCcc---------CH----HH
Confidence 567899999999999999999988632 377777777766665332 1111 11 12
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
--. +. |+ ...|..+ ..++. . ...+++++||. +.++|+..+++...++
T Consensus 95 ~~~--~~-fs---~p~~~~~-~~~v~-~--~~~~~~~~dL~---g~~Igv~~g~~~~~~l 141 (243)
T PRK15007 95 EKQ--VL-FT---TPYYDNS-ALFVG-Q--QGKYTSVDQLK---GKKVGVQNGTTHQKFI 141 (243)
T ss_pred hcc--cc-ee---cCccccc-eEEEE-e--CCCCCCHHHhC---CCeEEEecCcHHHHHH
Confidence 110 00 11 0011111 11222 2 23589999996 4799999988776554
No 243
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=72.91 E-value=20 Score=37.84 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=47.6
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.+.. +.++++.. ++...++..|.+|++|+++..-.......+. -.+.|+.....++
T Consensus 109 ~~~~~l~~~~~~~P~v~i~~~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~-~~~~~l~~~~~~~ 174 (305)
T CHL00180 109 LMPRLIGLFRQRYPQINVQLQV-------------HSTRRIAWNVANGQIDIAIVGGEVPTELKKI-LEITPYVEDELAL 174 (305)
T ss_pred HHHHHHHHHHHHCCCceEEEEe-------------CCHHHHHHHHHcCCccEEEEcCccCcccccc-eeEEEeccCcEEE
Confidence 3457777777663 56677652 3568899999999999997632211111122 2356888889999
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 175 v~~~~~p 181 (305)
T CHL00180 175 IIPKSHP 181 (305)
T ss_pred EECCCCc
Confidence 9887654
No 244
>PRK10200 putative racemase; Provisional
Probab=72.07 E-value=18 Score=36.32 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=33.2
Q ss_pred CChhHHHHHHHHHhhc-CeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 48 YDSLHTAKLMCNATSE-GIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 48 ~~~~~a~~~a~~li~~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
.+|.......++.+.+ |+.+|+=|..++.+. ...+-+..++|+|+.
T Consensus 58 ~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~-~~~l~~~~~iPii~i 104 (230)
T PRK10200 58 DKTGDILAEAALGLQRAGAEGIVLCTNTMHKV-ADAIESRCSLPFLHI 104 (230)
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCchHHHH-HHHHHHhCCCCEeeh
Confidence 4577777776776666 999999888776666 456666678887764
No 245
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=70.39 E-value=66 Score=34.15 Aligned_cols=139 Identities=11% Similarity=-0.036 Sum_probs=75.5
Q ss_pred cCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEec
Q psy16206 63 EGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYET 142 (821)
Q Consensus 63 ~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~ 142 (821)
.+|+++|--.... . .....+...++|++....... ....+ ....++...+..+++.+...|.++++++...
T Consensus 113 ~~vDgiI~~~~~~-~-~~~~~l~~~~~pvV~~~~~~~----~~~~~---~V~~D~~~~~~~a~~~l~~~G~~~i~~i~~~ 183 (327)
T PRK10339 113 KNVTGILIVGKPT-P-ALRAAASALTDNICFIDFHEP----GSGYD---AVDIDLARISKEIIDFYINQGVNRIGFIGGE 183 (327)
T ss_pred ccCCEEEEeCCCC-H-HHHHHHHhcCCCEEEEeCCCC----CCCCC---EEEECHHHHHHHHHHHHHHCCCCeEEEeCCc
Confidence 4677666321211 1 233445667899998753221 11122 3666766677788888888899999999653
Q ss_pred CC---c---hhHHHHHHHhcCCCCCcCCCCCCeEE--EEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHH
Q psy16206 143 HD---N---LVYLQQVLENAHDDDKEIRPGRPSVT--IRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQ 212 (821)
Q Consensus 143 ~~---~---~~~~~~~~~~~~~~~~~~~~~g~~v~--~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~ 212 (821)
.. . ..++.+.++..+ .... ...-.....+....++++.+. .+++|+ +++...+..++++
T Consensus 184 ~~~~~~~~R~~gf~~~~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~D~~A~g~~~a 252 (327)
T PRK10339 184 DEPGKADIREVAFAEYGRLKQ----------VVREEDIWRGGFSSSSGYELAKQMLAREDYPKALF-VASDSIAIGVLRA 252 (327)
T ss_pred cccchhhHHHHHHHHHHHHcC----------CCChhheeecCcChhHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHH
Confidence 32 1 223334443333 2100 111111112233455555443 355544 4556778889999
Q ss_pred HHHccccCc
Q psy16206 213 AKEVHLMGD 221 (821)
Q Consensus 213 a~~~g~~~~ 221 (821)
+.+.|+.-+
T Consensus 253 l~~~g~~vP 261 (327)
T PRK10339 253 IHERGLNIP 261 (327)
T ss_pred HHHcCCCCC
Confidence 999998644
No 246
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=69.12 E-value=0.82 Score=45.48 Aligned_cols=45 Identities=33% Similarity=0.578 Sum_probs=37.4
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeee
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFIL 738 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 738 (821)
|+..|+..|+++.+++++|++++++.. .|..+...+.++..++++
T Consensus 19 ~~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~ 63 (225)
T PF00497_consen 19 GEPSGIDVDLLRAIAKRLGIKIEFVPM-------------PWSRLLEMLENGKADIII 63 (225)
T ss_dssp SEEESHHHHHHHHHHHHHTCEEEEEEE-------------EGGGHHHHHHTTSSSEEE
T ss_pred CCEEEEhHHHHHHHHhhcccccceeec-------------cccccccccccccccccc
Confidence 567899999999999999999998873 388888888888776543
No 247
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=68.30 E-value=2.7 Score=44.45 Aligned_cols=101 Identities=19% Similarity=0.132 Sum_probs=58.8
Q ss_pred CCccceecchHHHHHh----hc---CceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhccc
Q psy16206 681 GELYGYSVDLIKMIAN----EL---NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFV 752 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 752 (821)
|+..||..|+++.+++ ++ +++++++.. .|..++..+..+..+++.. +.+ .
T Consensus 60 g~~~G~didl~~~ia~~l~~~lg~~~~~~~~v~~-------------~~~~~i~~L~~G~~Di~~~~~~~---------t 117 (302)
T PRK10797 60 QKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI-------------TSQNRIPLLQNGTFDFECGSTTN---------N 117 (302)
T ss_pred CCEeeecHHHHHHHHHHHHHhhCCCCceEEEEEc-------------ChHhHHHHHHCCCccEEecCCcc---------C
Confidence 5678999998887766 44 467777653 2556677777776664321 111 1
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 753 NEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 753 ~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
| .|--... |+ .-|..+-.++++ ++. +.|++++||. +.++|+..++..+.++
T Consensus 118 ~----eR~~~~~---fS----~Py~~~~~~lv~-r~~-~~i~sl~dL~---Gk~V~v~~gs~~~~~l 168 (302)
T PRK10797 118 L----ERQKQAA---FS----DTIFVVGTRLLT-KKG-GDIKDFADLK---GKAVVVTSGTTSEVLL 168 (302)
T ss_pred c----chhhcce---ec----ccEeeccEEEEE-ECC-CCCCChHHcC---CCEEEEeCCCcHHHHH
Confidence 2 2222111 11 112222233444 443 4699999997 4799999998876654
No 248
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=67.29 E-value=93 Score=33.49 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=62.7
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
+||.+..... .....|++..++..|.+ .++...+.. +-.||..+.+.+..|+.+||++|+....+....
T Consensus 163 ~vG~vgg~~~p~v~~f~~gF~~Gak~~np~-------i~v~v~~~g-sf~D~~k~k~~a~~li~~GaDVI~~~ag~~~~g 234 (345)
T COG1744 163 KVGFVGGMDIPEVNRFINGFLAGAKSVNPD-------IKVKVVYVG-SFSDPAKGKEAANALIDQGADVIYPAAGGTGVG 234 (345)
T ss_pred ceeEEecccchhhHHHHHHHHHHHHhhCCC-------ccEEEEEec-CccChHHHHHHHHHHHhcCCCEEEecCCCCcch
Confidence 3555555554 55678999999999976 345666655 668999999999999999999999877766555
Q ss_pred HHHHHhccCCCceeeeccCCCC
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNK 100 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~ 100 (821)
.+. .+.+.+.=.|...++.+.
T Consensus 235 v~~-~A~~~~~~~iGvdsDQ~~ 255 (345)
T COG1744 235 VFQ-AAKELGAYAIGVDSDQSY 255 (345)
T ss_pred HHH-HHHHhCCCeEEEeccccc
Confidence 431 233333333777666554
No 249
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=66.81 E-value=55 Score=31.19 Aligned_cols=88 Identities=8% Similarity=0.078 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcCCCcEEE
Q psy16206 120 ISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNSSESHIL 198 (821)
Q Consensus 120 ~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~~~~~iv 198 (821)
....+.+.+...+ .++.++...++....+.+.+++.- + ++.+.-...+. +..+....++.|.++++|+|+
T Consensus 36 l~~~l~~~~~~~~-~~ifllG~~~~~~~~~~~~l~~~y-------P-~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 36 LFPDLLRRAEQRG-KRIFLLGGSEEVLEKAAANLRRRY-------P-GLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHHHC-------C-CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 4566666666666 488888888766666666555553 2 45554332221 356788899999999999999
Q ss_pred EeCChhHHHHHHHHHHHc
Q psy16206 199 LDCSMDKTVTILKQAKEV 216 (821)
Q Consensus 199 l~~~~~~~~~~l~~a~~~ 216 (821)
+.+..+.-..++.+.++.
T Consensus 107 vglG~PkQE~~~~~~~~~ 124 (172)
T PF03808_consen 107 VGLGAPKQERWIARHRQR 124 (172)
T ss_pred EECCCCHHHHHHHHHHHH
Confidence 998887777777766543
No 250
>cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold. This CD includes the C-terminal of LysR-type transcription regulators, BenM, CatM, and CatR, which are involved in the benzoate catabolism. The BenM and CatM are paralogs with overlapping functions. BenM responds synergistically to two effectors, benzoate and cis,cis-muconate, to activate expression of the benABCDE operon which is involved in benzoate catabolism, while CatM responses only to muconate. BenM and CatM share high protein sequence identity and bind to the operator-promoter regions that have similar DNA sequences. In Pseudomonas species, phenolic compounds are converted by different enzymes to central intermediates, such as protocatechuate and catechols. Generally, unsubstituted compounds, such as benzoate, are metabolized by an ortho-cleavage pathway. The catBCA operon encodes three enzymes
Probab=65.49 E-value=19 Score=34.73 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=47.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++.. ++...++..+.+|++|+++..... ....+ .+.|+......
T Consensus 14 ~~l~~~l~~~~~~~P~i~l~i~~-------------~~~~~~~~~l~~~~~Dl~i~~~~~---~~~~~-~~~~l~~~~~~ 76 (203)
T cd08445 14 GLLPELIRRFRQAAPDVEIELIE-------------MTTVQQIEALKEGRIDVGFGRLRI---EDPAI-RRIVLREEPLV 76 (203)
T ss_pred hHHHHHHHHHHHHCCCeEEEEEe-------------CChHHHHHHHHcCCCcEEEecCCC---CCCCc-eeEEEEeccEE
Confidence 45578888887765 66677662 246789999999999999753221 12223 24577888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 77 ~v~~~~hp 84 (203)
T cd08445 77 VALPAGHP 84 (203)
T ss_pred EEeeCCCC
Confidence 88887644
No 251
>TIGR00035 asp_race aspartate racemase.
Probab=64.51 E-value=14 Score=37.17 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=29.4
Q ss_pred ChhHHHHHHHHHhhc-CeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 49 DSLHTAKLMCNATSE-GIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 49 ~~~~a~~~a~~li~~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
++......+.+.+.+ |+.+|+=|..+.... +..+-+..++|+|+.
T Consensus 59 ~~~~~l~~~~~~L~~~g~d~iviaCNTah~~-~~~l~~~~~iPii~i 104 (229)
T TIGR00035 59 RPRPILIDIAVKLENAGADFIIMPCNTAHKF-AEDIQKAIGIPLISM 104 (229)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCccHHHH-HHHHHHhCCCCEech
Confidence 355555555555555 999999877765554 455666678888875
No 252
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=64.33 E-value=1.5e+02 Score=29.18 Aligned_cols=170 Identities=15% Similarity=0.172 Sum_probs=89.0
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEE-Ee------cCCChhHHHHHHHHHhhc----CeEEEE
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQ-HV------ENYDSLHTAKLMCNATSE----GIAAIF 69 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~-D~------~~~~~~~a~~~a~~li~~----~V~aii 69 (821)
++|=++.|.+...+..-+....+.+-... ..+..... ++ ...|...++.....++.+ ||+|++
T Consensus 1 ~~IlvINPNsT~smTe~~~~~a~~v~~~~------~~l~~~t~~~~~p~~Ieg~~de~~a~~~~l~ei~~~~~~Gvdaii 74 (230)
T COG4126 1 MRILVINPNSTASMTESMGETARKVASAD------TELISVTSPRDGPASIEGQEDEALAAPGLLREIADGEEQGVDAII 74 (230)
T ss_pred CeEEEECCCchHHHHHHHHHHHHhhcCCC------ceEEEEccCCCCCccccCcchHHHhhhHHHHHhhcccccCCcEEE
Confidence 35667888888555544554444443221 12333322 11 124555555555555432 799998
Q ss_pred cCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHH
Q psy16206 70 GPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYL 149 (821)
Q Consensus 70 Gp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~ 149 (821)
=...+. ..+..+=+.+.+|+|..... ........| +||+|+.........+
T Consensus 75 IaCf~D--Pgl~~~Re~~~~PviGi~eA--------------------------sv~~A~~vg-rrfsViTtt~rs~~il 125 (230)
T COG4126 75 IACFSD--PGLAAARERAAIPVIGICEA--------------------------SVLAALFVG-RRFSVITTTERSRPIL 125 (230)
T ss_pred EEecCC--hHHHHHHHHhCCCceehhHH--------------------------HHHHHHHhc-ceEEEEecCcccHHHH
Confidence 666665 34445567788998866321 111222233 6677777666666666
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEE--cC-----CCCCChHH-----HHHHhhcCCCcEEEEeCChh-HHHHHHHH
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQ--LP-----PDTDDYRP-----LLKEIKNSSESHILLDCSMD-KTVTILKQ 212 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~--~~-----~~~~d~~~-----~l~~lk~~~~~~ivl~~~~~-~~~~~l~~ 212 (821)
.++++..+ ..+.+...+. .+ .+.+.++. .-+.+++.++++|++.|.+- ....-|+.
T Consensus 126 ~~lv~~~g-------~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~ 194 (230)
T COG4126 126 EELVRSYG-------LSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDLADQLQK 194 (230)
T ss_pred HHHHHhcC-------ccccccceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHHHHHHHHHH
Confidence 66666655 2222222111 11 11222322 23446667999999998873 34444443
No 253
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.02 E-value=98 Score=30.13 Aligned_cols=130 Identities=15% Similarity=0.261 Sum_probs=76.6
Q ss_pred HHHHHHHHhhcCeEEEE-cCCCcc-------hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHH
Q psy16206 53 TAKLMCNATSEGIAAIF-GPQSIE-------NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGI 124 (821)
Q Consensus 53 a~~~a~~li~~~V~aii-Gp~~s~-------~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al 124 (821)
+..+|.+|-..+|++|. |..+.+ .....+.+-+..++|.+++ +.|+
T Consensus 56 t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~~v~vvTt--------------------------s~Av 109 (238)
T COG3473 56 TERAALELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAKGVPVVTT--------------------------STAV 109 (238)
T ss_pred HHHHHHhcCccccCEEEEeccceeeecCCchhHHHHHHHHhccCCceeec--------------------------hHHH
Confidence 34455556556777664 222111 3344445555556666654 2467
Q ss_pred HHHHHhCCCCEEEEEEecCCc-hhHHHHHHHhcCCCCCcCCCCCCeEE-EEE--cCCC----CCC---hHHHHHHhhcCC
Q psy16206 125 SVIINDMDWDTFTIIYETHDN-LVYLQQVLENAHDDDKEIRPGRPSVT-IRQ--LPPD----TDD---YRPLLKEIKNSS 193 (821)
Q Consensus 125 ~~~~~~~~w~~v~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~v~-~~~--~~~~----~~d---~~~~l~~lk~~~ 193 (821)
.+-++.++.+++.++..--+. .+...++++..| ..|. +.. ++.+ ..+ .-..-+++..-+
T Consensus 110 v~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~G----------feiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~ 179 (238)
T COG3473 110 VEALNALGAQRISVLTPYIDEVNQREIEFLEANG----------FEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPD 179 (238)
T ss_pred HHHHHhhCcceEEEeccchhhhhhHHHHHHHhCC----------eEEEEeeccCCcccchhcccChHHHHHHHHHhcCCC
Confidence 778899999999999887653 445556666665 3333 222 2222 112 233455666678
Q ss_pred CcEEEEeCChhHHHHHHHHHH-Hccc
Q psy16206 194 ESHILLDCSMDKTVTILKQAK-EVHL 218 (821)
Q Consensus 194 ~~~ivl~~~~~~~~~~l~~a~-~~g~ 218 (821)
+|.|++.|..-.+..++.... +.|.
T Consensus 180 ~DaiFiSCTnlRt~eii~~lE~~~G~ 205 (238)
T COG3473 180 ADAIFISCTNLRTFEIIEKLERDTGV 205 (238)
T ss_pred CCeEEEEeeccccHHHHHHHHHHhCC
Confidence 999999999877666666554 3454
No 254
>cd08421 PBP2_LTTR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functi
Probab=62.62 E-value=34 Score=32.51 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=48.3
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.++. +.++++.. ++..++++.|.+|++|+++.... .....+. +.+++....++
T Consensus 14 ~l~~~l~~~~~~~P~i~i~~~~-------------~~~~~~~~~l~~~~~D~~i~~~~---~~~~~~~-~~~l~~~~~~~ 76 (198)
T cd08421 14 FLPEDLASFLAAHPDVRIDLEE-------------RLSADIVRAVAEGRADLGIVAGN---VDAAGLE-TRPYRTDRLVV 76 (198)
T ss_pred hhHHHHHHHHHHCCCceEEEEe-------------cCcHHHHHHHhcCCceEEEEecC---CCCCCcE-EEEeecCcEEE
Confidence 3467888887775 66777763 25677899999999999875322 2233343 46788889999
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 77 v~~~~~p 83 (198)
T cd08421 77 VVPRDHP 83 (198)
T ss_pred EeCCCCC
Confidence 8887654
No 255
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=62.45 E-value=97 Score=35.50 Aligned_cols=133 Identities=8% Similarity=0.074 Sum_probs=84.1
Q ss_pred EEEEEEEecCCChhHHHHHHHH-HhhcCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecC
Q psy16206 38 LEPIVQHVENYDSLHTAKLMCN-ATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPE 116 (821)
Q Consensus 38 l~~~~~D~~~~~~~~a~~~a~~-li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~ 116 (821)
+++.++. ++-..+++.+.+ +..+++++||.-.++ +..+ -+...+|+|...-+ .++
T Consensus 30 ~~~~v~~---~~~~~~~~~a~~~~~~~~~dviIsrG~t--a~~i---~~~~~iPVv~i~~s--------~~D-------- 85 (526)
T TIGR02329 30 ANITPIQ---LGFEDAVREIRQRLGAERCDVVVAGGSN--GAYL---KSRLSLPVIVIKPT--------GFD-------- 85 (526)
T ss_pred ceEEEEe---ccHHHHHHHHHHHHHhCCCcEEEECchH--HHHH---HHhCCCCEEEecCC--------hhh--------
Confidence 4555555 667778888866 555599999975543 3333 34567999876421 122
Q ss_pred hhhHHHHHHHHHHhCCCCEEEEEEecCC--chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCC
Q psy16206 117 SHLISKGISVIINDMDWDTFTIIYETHD--NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSE 194 (821)
Q Consensus 117 ~~~~~~al~~~~~~~~w~~v~ii~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~ 194 (821)
..+++.. ++.++ .++++|.-... +...+.+++ + ..+....+.. ..|....++++++.+.
T Consensus 86 ---il~al~~-a~~~~-~~ia~vg~~~~~~~~~~~~~ll---~----------~~i~~~~~~~-~~e~~~~~~~l~~~G~ 146 (526)
T TIGR02329 86 ---VMQALAR-ARRIA-SSIGVVTHQDTPPALRRFQAAF---N----------LDIVQRSYVT-EEDARSCVNDLRARGI 146 (526)
T ss_pred ---HHHHHHH-HHhcC-CcEEEEecCcccHHHHHHHHHh---C----------CceEEEEecC-HHHHHHHHHHHHHCCC
Confidence 3345433 45665 67777766543 444444443 2 3455555544 6789999999999999
Q ss_pred cEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 195 SHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 195 ~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
++||-.+ ...+.|.++||.
T Consensus 147 ~~viG~~------~~~~~A~~~gl~ 165 (526)
T TIGR02329 147 GAVVGAG------LITDLAEQAGLH 165 (526)
T ss_pred CEEECCh------HHHHHHHHcCCc
Confidence 9988433 345778888985
No 256
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=62.31 E-value=1.6e+02 Score=28.85 Aligned_cols=123 Identities=12% Similarity=0.154 Sum_probs=66.5
Q ss_pred HHHHhhcCeEEEEcCCCcchHHHHHHHh-ccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCE
Q psy16206 57 MCNATSEGIAAIFGPQSIENRNIIESMC-QMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDT 135 (821)
Q Consensus 57 a~~li~~~V~aiiGp~~s~~~~~v~~i~-~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~ 135 (821)
+.+|...|+++|+-+.++.. ..+..+- +..++|+++.. ++...-+.. +-++
T Consensus 58 ~~~l~~~g~d~i~i~C~s~~-~~~~~~~~~~~~iPv~~~~--------------------------~a~~~~~~~-~~~r 109 (216)
T PF01177_consen 58 AEKLEKAGVDAIVIACNSAH-PFVDELRKERVGIPVVGIV--------------------------EAALEAAKA-GGKR 109 (216)
T ss_dssp HHHHHHTTESEEEESSHHHH-HHHHHHHHHHHSSEEEESH--------------------------HHHHHHHHH-TSSE
T ss_pred HHHHHhCCCCEEEEcCCchh-hhHHHHhhhcCceEEEecc--------------------------HHHHHHHHh-cCCE
Confidence 34444559999987766542 2233344 66788877642 111333444 7888
Q ss_pred EEEEEecC-CchhHHHHHHHhc-CCCCCcCCCCCCeEEE--E-EcC----CC--CC----ChHHHHHHh-hcCCCcEEEE
Q psy16206 136 FTIIYETH-DNLVYLQQVLENA-HDDDKEIRPGRPSVTI--R-QLP----PD--TD----DYRPLLKEI-KNSSESHILL 199 (821)
Q Consensus 136 v~ii~~~~-~~~~~~~~~~~~~-~~~~~~~~~~g~~v~~--~-~~~----~~--~~----d~~~~l~~l-k~~~~~~ivl 199 (821)
++|+.... .....+++.+++. + . ...+.. . ... .. .. .+...++++ +..++++|++
T Consensus 110 i~vl~t~~~~~~~~~~~~~~~~~g-------i-~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~d~iiL 181 (216)
T PF01177_consen 110 IGVLTTYTTEKSPLYEEFIEEAAG-------I-DDEVVAGIHNAIYDVIELGDIPPEQIEILAEAARELIKEDGADAIIL 181 (216)
T ss_dssp EEEEESHHHHHHTHHHHHHHHCTT-------E-ECEEEEEEEEEHTHHHHTTCTTHHHHHHHHHHHHHHHHCTTSSEEEE
T ss_pred EEEEecCcccchHHHHHHHHHhcC-------C-cHHHHHHHHhhcHHHHhhhcCCHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 99988543 3455666666666 3 1 002211 1 110 11 11 233334444 3779999999
Q ss_pred eCChhHHH-HHHHHHHH
Q psy16206 200 DCSMDKTV-TILKQAKE 215 (821)
Q Consensus 200 ~~~~~~~~-~~l~~a~~ 215 (821)
.|..-... ...+.+.+
T Consensus 182 gCt~l~~~~~~~~~l~~ 198 (216)
T PF01177_consen 182 GCTHLPLLLGAIEALEE 198 (216)
T ss_dssp ESTTGGGGHHHHHHHHH
T ss_pred CCCchHHHHHHHHhhcc
Confidence 98875533 55655544
No 257
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=61.08 E-value=96 Score=30.78 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=49.8
Q ss_pred CEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh--hHHHHHH
Q psy16206 134 DTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSM--DKTVTIL 210 (821)
Q Consensus 134 ~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~--~~~~~~l 210 (821)
.+++||....+-.....+-++... . ...+. ...|..+..++...-++|++.++++|+++|-+ ...+.++
T Consensus 126 ~~vGVivP~~eQ~~~~~~kW~~l~-------~-~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~ 197 (221)
T PF07302_consen 126 HQVGVIVPLPEQIAQQAEKWQPLG-------N-PVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYTQEMRDIV 197 (221)
T ss_pred CeEEEEecCHHHHHHHHHHHHhcC-------C-CeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHH
Confidence 799999998875555555666654 1 12222 22354446678888889999999999999876 5566677
Q ss_pred HHHH
Q psy16206 211 KQAK 214 (821)
Q Consensus 211 ~~a~ 214 (821)
+++.
T Consensus 198 ~~~~ 201 (221)
T PF07302_consen 198 QRAL 201 (221)
T ss_pred HHHh
Confidence 6643
No 258
>cd08468 PBP2_Pa0477 The C-terminal substrate biniding domain of an uncharacterized LysR-like transcriptional regulator Pa0477 related to DntR, contains the type 2 periplasmic binding fold. LysR-type transcriptional regulator Pa0477 is related to DntR, which controls genes encoding enzymes for oxidative degradation of the nitro-aromatic compound 2,4-dinitrotoluene. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their spec
Probab=61.04 E-value=29 Score=33.36 Aligned_cols=73 Identities=7% Similarity=0.022 Sum_probs=49.6
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++. ++...+++.|.+|++|+++..........+.+. +.|+.....+
T Consensus 13 ~~l~~~l~~~~~~~P~v~i~~~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~~~-~~~l~~~~~~ 78 (202)
T cd08468 13 AVMPRLMARLEELAPSVRLNLVH-------------AEQKLPLDALLAGEIDFALGYSHDDGAEPRLIE-ERDWWEDTYV 78 (202)
T ss_pred HHhHHHHHHHHhhCCCCEEEEEE-------------CChHhHHHHHHCCCccEEEecccccccCCCCEE-EEEEecCcEE
Confidence 44578888888876 67777763 356789999999999999763321100022333 3577888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 79 ~~~~~~hp 86 (202)
T cd08468 79 VIASRDHP 86 (202)
T ss_pred EEEeCCCC
Confidence 88887754
No 259
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=60.85 E-value=66 Score=30.59 Aligned_cols=89 Identities=8% Similarity=0.057 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcCCCcEEE
Q psy16206 120 ISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNSSESHIL 198 (821)
Q Consensus 120 ~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~~~~~iv 198 (821)
....+.+.+...+ .++.++....+....+.+.+++.- + |+.+.....++ +..+-.+.++.|.++++|+|+
T Consensus 34 l~~~ll~~~~~~~-~~v~llG~~~~~~~~~~~~l~~~y-------p-~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 34 LMPALLELAAQKG-LRVFLLGAKPEVLEKAAERLRARY-------P-GLKIVGYHHGYFGPEEEEEIIERINASGADILF 104 (171)
T ss_pred HHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHHHHHHC-------C-CcEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 4566666666555 788888877766665555555542 2 55555422222 234445589999999999999
Q ss_pred EeCChhHHHHHHHHHHHcc
Q psy16206 199 LDCSMDKTVTILKQAKEVH 217 (821)
Q Consensus 199 l~~~~~~~~~~l~~a~~~g 217 (821)
+.+..+.-..++.+.++..
T Consensus 105 vglG~PkQE~~~~~~~~~l 123 (171)
T cd06533 105 VGLGAPKQELWIARHKDRL 123 (171)
T ss_pred EECCCCHHHHHHHHHHHHC
Confidence 9998888777877766544
No 260
>PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins []. This domain is found in members of the LysR family of prokaryotic transcriptional regulatory proteins IPR000847 from INTERPRO which share sequence similarities over approximately 280 residues including a putative helix-turn-helix DNA-binding motif at their N terminus.; PDB: 3ONM_B 3FZJ_J 3FXR_B 3N6T_A 3FXQ_A 3FXU_A 3N6U_A 2QSX_B 3HO7_B 1IZ1_B ....
Probab=60.03 E-value=29 Score=33.45 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=50.3
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
-+-.+++..+.++. ++++++..- +...+++.|.+|++|+++..... ....+. ..|+.....+
T Consensus 19 ~~l~~~l~~~~~~~P~i~i~~~~~-------------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~~~-~~~l~~~~~~ 81 (209)
T PF03466_consen 19 SLLPPLLAEFRERHPNIRIEIREG-------------DSDELIEALRSGELDLAITFGPP---PPPGLE-SEPLGEEPLV 81 (209)
T ss_dssp HTHHHHHHHHHHHSTTEEEEEEEE-------------SHHHHHHHHHTTSSSEEEESSSS---SSTTEE-EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEec-------------cchhhhHHHhcccccEEEEEeec---cccccc-cccccceeee
Confidence 34467888886665 667777632 56789999999999999764443 233333 5688899999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 82 ~~~~~~~p 89 (209)
T PF03466_consen 82 LVVSPDHP 89 (209)
T ss_dssp EEEETTSG
T ss_pred eeeecccc
Confidence 99998863
No 261
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=59.91 E-value=14 Score=39.49 Aligned_cols=64 Identities=14% Similarity=0.278 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhccee-ecccce
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVD-FTMPFM 512 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~-fS~p~~ 512 (821)
..+.+++.++.|=++++.++|+++.|. =..++++|+.|.+|+.+.+...-..+...+. |+-||.
T Consensus 47 ~~fa~~v~ekt~G~l~i~vfP~~qLG~-------~~~~ie~l~~G~id~~~~s~~~l~~~~P~~~v~~lPfl 111 (332)
T COG1638 47 KKFAELVEEKTGGRLKIEVFPNSQLGG-------EAEMIEQLRSGTLDIGVVSLGFLAGLVPEFGVFDLPFL 111 (332)
T ss_pred HHHHHHHHHHhCCeEEEEECCCcccCc-------HHHHHHHHhcCCeeEEeccchhhcccCCcceeecCCee
Confidence 477888999999999999999888774 3669999999999999876655555444332 445554
No 262
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=59.87 E-value=27 Score=36.15 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=49.0
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.+.. +.+++++. +....+++.|.+|++|+++..... .. ..+ ...|+.....+
T Consensus 102 ~~l~~~l~~f~~~~P~v~v~~~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~--~~-~~l-~~~~l~~~~~~ 164 (275)
T PRK03601 102 CMLTPWLGRLYQNQEALQFEARI-------------AQRQSLVKQLHERQLDLLITTEAP--KM-DEF-SSQLLGHFTLA 164 (275)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEE-------------CChHHHHHHHHcCCCCEEEEcCCC--cc-CCc-cEEEecceeEE
Confidence 45577888886653 67777763 346779999999999999864322 22 223 45688889999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 165 ~v~~~~~~ 172 (275)
T PRK03601 165 LYTSAPSK 172 (275)
T ss_pred EEecCchh
Confidence 99887644
No 263
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=59.68 E-value=1e+02 Score=30.64 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=57.2
Q ss_pred eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcC-CcceEEeccccchhhh---ccee--ecccce
Q psy16206 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQ-RADLAICDLTITSERR---AAVD--FTMPFM 512 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g-~~Di~~~~~~~t~~R~---~~~~--fS~p~~ 512 (821)
+..-++++.+.++.|++++++..+ -..+...|..| +.|+.+..-....++. ..+. -..|+.
T Consensus 11 ~~~~~l~~~f~~~~g~~v~v~~~~-------------s~~~~~~l~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~~ 77 (230)
T PF13531_consen 11 PALEELAEAFEKQPGIKVEVSFGG-------------SGELVRRLQAGKKPDVFIPASSEWLERLAAAGLVDPGSPAPLA 77 (230)
T ss_dssp HHHHHHHHHHHHHHCEEEEEEEEC-------------HHHHHHHHHTT-S-SEEEESSHHHHHHHHHTTTCSGGGEEEEE
T ss_pred HHHHHHHHHHHhccCCeEEEEECC-------------hHHHHHHHhcCCCceEEEECCHHHHHHHHhcccccCCcccccc
Confidence 556688999988999999988653 35677777766 8999977543332222 2344 456899
Q ss_pred eeceEEEEEcCCCC-CCCcccccc
Q psy16206 513 TLGISILYRKPAKK-QPDLFSFLE 535 (821)
Q Consensus 513 ~~~~~l~~~~~~~~-~~~~~~~l~ 535 (821)
.+..+++++++.+. ..++.++.+
T Consensus 78 ~~~~vl~~~~~~~~~~~~~~dL~~ 101 (230)
T PF13531_consen 78 RSPLVLAVPKGNPKGIRSWADLAQ 101 (230)
T ss_dssp EEEEEEEEETTSTTSTTCHHHHCS
T ss_pred cCceEEEeccCcccccCCHHHHhh
Confidence 99999999998752 344444444
No 264
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=59.62 E-value=5.3 Score=40.11 Aligned_cols=101 Identities=12% Similarity=0.237 Sum_probs=58.1
Q ss_pred CccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeeehhhhhhhhhhcccccccccchh
Q psy16206 682 ELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILFFIYSILFFIYTFVNEAVSTRLV 761 (821)
Q Consensus 682 ~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 761 (821)
+..|+..|+++.+++++|.+++++.... .|.-+...+.++..+.+.. .| .|--
T Consensus 17 ~~~G~~~el~~~i~~~~g~~i~~~~~~~-----------~~~~~~~~l~~g~~Di~~~------------~~----~r~~ 69 (232)
T TIGR03871 17 KGEGFENKIAQLLADDLGLPLEYTWFPQ-----------RRGFVRNTLNAGRCDVVIG------------VP----AGYE 69 (232)
T ss_pred CCCchHHHHHHHHHHHcCCceEEEecCc-----------chhhHHHHHhcCCccEEEe------------cc----Cccc
Confidence 3479999999999999999988764221 1111233455554443220 11 1211
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhh--hhhcCceeEEEEecCcccccc
Q psy16206 762 AGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVED--LAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 762 ~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~d--L~~~~~~~~~~~~~~~~~~~~ 819 (821)
. +.+...|...=..+++.+.....+++++| |. +.++|+..++..+.++
T Consensus 70 ~-------~~fs~py~~~~~~lv~~~~~~~~~~~~~d~~l~---g~~V~v~~g~~~~~~l 119 (232)
T TIGR03871 70 M-------VLTTRPYYRSTYVFVTRKDSLLDVKSLDDPRLK---KLRIGVFAGTPPAHWL 119 (232)
T ss_pred c-------ccccCCcEeeeEEEEEeCCCcccccchhhhhhc---CCeEEEEcCChHHHHH
Confidence 0 01122232222344555554467899998 54 5799999998876654
No 265
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=59.36 E-value=38 Score=31.36 Aligned_cols=86 Identities=10% Similarity=0.075 Sum_probs=50.3
Q ss_pred HHHHHhCCCCEEEEEEecCC------chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHH-HHhhcCCCc
Q psy16206 125 SVIINDMDWDTFTIIYETHD------NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLL-KEIKNSSES 195 (821)
Q Consensus 125 ~~~~~~~~w~~v~ii~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l-~~lk~~~~~ 195 (821)
++.+...|.++++++..... ...+++.++++.+ .......+... ..+..... ..+++..++
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pd 70 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHG----------IEFEELIFFSDDDSEDAREAQLLWLRRLRPD 70 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTT----------SEEEGEEEEESSSHHHHHHHHHHHHHTCSSS
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCC----------CCCCeeEeecCCcchhHHHHHHHHHhcCCCc
Confidence 46778899999999994432 2444455554444 55443322221 12222222 234434667
Q ss_pred EEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 196 HILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 196 ~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.||+ ++...+..+++.+.+.|+.-+
T Consensus 71 aii~-~~~~~a~~~~~~l~~~g~~vP 95 (160)
T PF13377_consen 71 AIIC-SNDRLALGVLRALRELGIRVP 95 (160)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTTSCTT
T ss_pred EEEE-cCHHHHHHHHHHHHHcCCccc
Confidence 6665 777888899999999999644
No 266
>PF03180 Lipoprotein_9: NLPA lipoprotein; InterPro: IPR004872 This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to IPR001638 from INTERPRO which are solute binding proteins.; PDB: 4EF2_A 4EF1_B 3GXA_C 3IR1_D 3TQW_A 3K2D_B 3UP9_A 1XS5_A 1P99_A.
Probab=56.38 E-value=34 Score=34.53 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccc-----cchhhhcceeecccceeece
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLT-----ITSERRAAVDFTMPFMTLGI 516 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~-----~t~~R~~~~~fS~p~~~~~~ 516 (821)
.+.++..+++.|++++++.+. ++...-.+|.+|++|+-+.--. .+.+....+....|.+....
T Consensus 14 ~~~v~~~~~~~Gi~vevv~f~------------D~~~~N~AL~~G~iDaN~fQh~~yl~~~n~~~~~~L~~v~~~~~~p~ 81 (237)
T PF03180_consen 14 LEAVKEKLKKKGIDVEVVEFS------------DYVQPNEALADGEIDANFFQHIPYLEQFNKENGYNLVPVGPTYIEPM 81 (237)
T ss_dssp HHHHHHHHHHTTEEEEEEEES------------STTHHHHHHHTTSSSEEEEEEHHHHHHHHHHHT--EEEEEEEEE---
T ss_pred HHHHHHHHHhcCCeEEEEEec------------chhhcChHHHCCCcceeccCCHHHHHHHHHHCCCcEEEecceeEEeE
Confidence 456677778889999999986 6788899999999999754211 11222333444557888888
Q ss_pred EEEEEcC
Q psy16206 517 SILYRKP 523 (821)
Q Consensus 517 ~l~~~~~ 523 (821)
.++..+-
T Consensus 82 glYS~k~ 88 (237)
T PF03180_consen 82 GLYSKKY 88 (237)
T ss_dssp EEEESSS
T ss_pred EEeeccc
Confidence 8876543
No 267
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=56.04 E-value=43 Score=34.96 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=48.0
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. .++...++..|.+|++|+++.... .+.+. ..+.++.....+
T Consensus 104 ~~l~~~l~~~~~~~p~~~i~~~-------------~~~~~~~~~~l~~g~~Dl~i~~~~---~~~~~-l~~~~l~~~~~~ 166 (296)
T PRK11242 104 YLIGPLIDAFHARYPGITLTIR-------------EMSQERIEALLADDELDVGIAFAP---VHSPE-IEAQPLFTETLA 166 (296)
T ss_pred hhhHHHHHHHHHHCCCCEEEEE-------------eCCHHHHHHHHHCCCCcEEEEecC---CCCcc-eeEEEeeeccEE
Confidence 34467888887774 5556665 224577899999999999975322 22223 335788889999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 167 ~~~~~~~p 174 (296)
T PRK11242 167 LVVGRHHP 174 (296)
T ss_pred EEEcCCCc
Confidence 99888754
No 268
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=56.02 E-value=9.2 Score=37.16 Aligned_cols=102 Identities=31% Similarity=0.455 Sum_probs=58.3
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeeehhhhhhhhhhcccccccccch
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILFFIYSILFFIYTFVNEAVSTRL 760 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 760 (821)
|+..|+..++++.+.++++.+++++... |..+...+.++..++.+... + ....|.
T Consensus 19 g~~~G~~~~~~~~~~~~~g~~~~~~~~~-------------~~~~~~~l~~g~~D~~~~~~-~-----------~~~~~~ 73 (218)
T cd00134 19 GELTGFDVDLAKAIAKELGVKVKFVEVD-------------WDGLITALKSGKVDLIAAGM-T-----------ITPERA 73 (218)
T ss_pred CCEEeeeHHHHHHHHHHhCCeEEEEeCC-------------HHHHHHHHhcCCcCEEeecC-c-----------CCHHHH
Confidence 4567999999999999999998877532 66677777777666433111 0 011111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 761 VAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 761 ~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
-. +. ++ ...++... .++ -+...++.+++||.. .++|+..++....++
T Consensus 74 ~~--~~-~~---~~~~~~~~-~~~--~~~~~~~~~~~dl~g---~~i~~~~~~~~~~~~ 120 (218)
T cd00134 74 KQ--VD-FS---DPYYKSGQ-VIL--VKKGSPIKSVKDLKG---KKVAVQKGSTAEKYL 120 (218)
T ss_pred hh--cc-Cc---ccceeccE-EEE--EECCCCCCChHHhCC---CEEEEEcCchHHHHH
Confidence 10 00 00 01111111 122 223466789999974 688888777766544
No 269
>cd08435 PBP2_GbpR The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold. Galactose-binding protein regulator (GbpR), a member of the LysR family of bacterial transcriptional regulators, regulates the expression of chromosomal virulence gene chvE. The chvE gene is involved in the uptake of specific sugars, in chemotaxis to these sugars, and in the VirA-VirG two-component signal transduction system. In the presence of an inducing sugar such as L-arabinose, D-fucose, or D-galactose, GbpR activates chvE expression, while in the absence of an inducing sugar, GbpR represses expression. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a ma
Probab=55.48 E-value=72 Score=30.15 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=47.0
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. .++-.++.+++.+|++|+++.... ...+...+. ..|+.....+
T Consensus 13 ~~l~~~l~~~~~~~P~v~i~i~-------------~~~~~~~~~~l~~~~~Dl~i~~~~-~~~~~~~~~-~~~l~~~~~~ 77 (201)
T cd08435 13 VLLPPAIARLLARHPRLTVRVV-------------EGTSDELLEGLRAGELDLAIGRLA-DDEQPPDLA-SEELADEPLV 77 (201)
T ss_pred HHHHHHHHHHHHHCCCeEEEEE-------------eCCHHHHHHHHHcCCccEEEEecC-cccCCCCcE-EEEcccCcEE
Confidence 33467777777664 5666665 224577899999999999975321 111123333 4578888899
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 78 ~~~~~~~~ 85 (201)
T cd08435 78 VVARPGHP 85 (201)
T ss_pred EEEeCCCc
Confidence 98887654
No 270
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=54.81 E-value=18 Score=29.27 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=33.4
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLT 785 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt 785 (821)
...|.+..+|++...|.++.+.+.+...+.+++.++
T Consensus 43 Di~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 43 DIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999998875
No 271
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=53.88 E-value=2.8e+02 Score=28.98 Aligned_cols=198 Identities=10% Similarity=-0.020 Sum_probs=102.1
Q ss_pred cEEEEeCCCc-hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcchHHH
Q psy16206 2 KIVGIFGPNE-EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIENRNI 79 (821)
Q Consensus 2 ~IG~i~~~~~-~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~~~~ 79 (821)
.||+..|.-. +...+--...++.+++-+ .+..+...+ ++...-.....+++++|+.+++ +|..+.....
T Consensus 27 ~IGis~~d~~~eRW~~D~~~~~~~~e~~g------~k~~~q~A~---~~~~~Q~~qien~i~qg~~vlvi~a~d~~~l~~ 97 (341)
T COG4213 27 VIGISMPDLRSERWIKDRDAFVKKAEALG------AKVDVQSAD---GDEEKQLAQIENMINQGVKVLVIGAIDGGVLSN 97 (341)
T ss_pred eEEEEcCChhHhhhhhhhHHHHHHHHhcc------chhhhhhhc---cChhHHHHHHHHHHhcCCCEEEEEeccchhHHH
Confidence 4666665433 333322233344444432 244444444 5666666778899999887764 9999988888
Q ss_pred HHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhh----HHHHHHHHHHhCC---CCEEEEEE-ecCC-----ch
Q psy16206 80 IESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHL----ISKGISVIINDMD---WDTFTIIY-ETHD-----NL 146 (821)
Q Consensus 80 v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~----~~~al~~~~~~~~---w~~v~ii~-~~~~-----~~ 146 (821)
+-..+...+||+|++..-- . .....|+ +.-.... |+.++..-++... -..+..+. +.+| -.
T Consensus 98 ~i~~A~~~gikViaYDRlI---~-n~dvd~Y--vsFDN~~VG~lQa~~l~~~lk~k~~~~~gn~~l~~GSp~DnNA~lf~ 171 (341)
T COG4213 98 AVEKAKSEGIKVIAYDRLI---N-NADVDFY--VSFDNEKVGELQAKALVKGLKLKPLTSEGNYVLLGGSPDDNNAKLFF 171 (341)
T ss_pred HHHHHHHcCCeEEEeeccc---c-cCCccEE--EEecchhHHHHHHHHHHHHhccCCCCCCCCEEEecCCCCCcchHHHH
Confidence 8888999999999984221 1 1222222 3333333 4555544454433 23333333 3333 13
Q ss_pred hHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHHHHhhcC---CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 147 VYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLLKEIKNS---SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l~~lk~~---~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
....+.|+..- ....+.+.-+..-+. .......+..+... ..+.|+ ......+.-.+.++...|+.++
T Consensus 172 ~G~m~VLkp~i------dsGkik~~Ge~~~d~W~ps~Aq~~men~lta~~~~vdaVv-A~nDgtagGaI~aL~a~Gl~g~ 244 (341)
T COG4213 172 AGAMKVLKPLI------DSGKIKVVGEQWTDGWLPSNAQQIMENLLTANYNDIDAVV-APNDGTAGGAIAALKAQGLAGK 244 (341)
T ss_pred hcHHHHHHHHh------hCCceEEeeeccccccCHHHHHHHHHHHHhcccCceeEEE-cCCCchhHHHHHHHHhcccCCC
Confidence 33344555442 011233322222111 22233334443333 334444 3334566778888888998744
No 272
>PRK07475 hypothetical protein; Provisional
Probab=53.77 E-value=43 Score=34.05 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=27.9
Q ss_pred ChhHHHHHHHHHhh-cCeEEEEcCCCcchHHHHHHHhccCCCceee
Q psy16206 49 DSLHTAKLMCNATS-EGIAAIFGPQSIENRNIIESMCQMFDIPHVE 93 (821)
Q Consensus 49 ~~~~a~~~a~~li~-~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is 93 (821)
++......+.+.+. .|+++|+.|... .......+.+..+||+++
T Consensus 62 ~~~~~l~~aa~~L~~~G~d~I~~~Cgt-~~~~~~~l~~~~~VPv~~ 106 (245)
T PRK07475 62 SLLDAFVAAARELEAEGVRAITTSCGF-LALFQRELAAALGVPVAT 106 (245)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEechHH-HHHHHHHHHHHcCCCEec
Confidence 45455555555444 499999998743 333445566667888885
No 273
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=52.77 E-value=1.2e+02 Score=32.36 Aligned_cols=149 Identities=13% Similarity=0.022 Sum_probs=81.9
Q ss_pred eeHHHHHHHHHHHcCC-eEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceE--Eeccccc-hhhhc--ceeecccce
Q psy16206 439 GYSVDLIKMIANELNF-TYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLA--ICDLTIT-SERRA--AVDFTMPFM 512 (821)
Q Consensus 439 G~~~dll~~ia~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~--~~~~~~t-~~R~~--~~~fS~p~~ 512 (821)
++.+-..+-+.++.|. +++++..+ +|...+++|..|.+|++ ..+.... ..+.. .+..-.-..
T Consensus 45 ~~~va~~kG~f~~~Gl~~v~~~~~~------------~~~~~~~~l~~G~~D~a~~~~~~~~~~~~~~~g~pv~~va~~~ 112 (335)
T COG0715 45 PLYVAKEKGFFKKEGLDDVELVEFT------------GGAPVLEALAAGALDFAVYYTGDTPLIAAGAAGAPVKVVAALV 112 (335)
T ss_pred HHHHHHHhChHhHhCCCceEEEEcC------------CChHHHHHHhcCCcCccccccCchHHHHhhccCCCeEEeeecc
Confidence 4555555666778888 59998765 89999999999999999 3333331 12211 222222222
Q ss_pred e--eceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecCC-ChHHHHHHHHh--h
Q psy16206 513 T--LGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNS-NVSLYQRMHSA--M 587 (821)
Q Consensus 513 ~--~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~ 587 (821)
. ....+++++.+. ..+ ...+++.+..+|. ..+ ..-.....+.. +
T Consensus 113 ~~~~~~~i~~~~~~~-i~~-~adlkGk~vg~~~-----------------------------~~~~~~~~l~~~L~~~Gl 161 (335)
T COG0715 113 QNGNGIALLVLKDSG-IKS-VADLKGKKVGVPF-----------------------------GGSTSDFLLRYALAKAGL 161 (335)
T ss_pred cCCceeEEEeccCCC-ccc-ccCCCCceEEEeC-----------------------------CCchHHHHHHHHHHHcCC
Confidence 2 356777777665 222 3334544433311 111 00111111111 1
Q ss_pred hccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCC
Q psy16206 588 ESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCD 631 (821)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~ 631 (821)
......+..-.+.++..++.. |++|+++.-.........+...
T Consensus 162 ~~~dv~~v~~~~~~~~~al~~-g~vda~~~~ep~~~~~~~~~~~ 204 (335)
T COG0715 162 DPDDVELVNLPPADAVAALAA-GQVDAFVVWEPWNAAAEGEGGG 204 (335)
T ss_pred CcccceEEeeCcHHHHHHHhc-CCcceEEecCCchhhhhccCCe
Confidence 112222233345578888877 9999988877777776666543
No 274
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=52.62 E-value=1.3e+02 Score=29.88 Aligned_cols=136 Identities=8% Similarity=0.086 Sum_probs=69.1
Q ss_pred CChhHHHHHHHHHhhc-CeEEEEcCCCcchHHHHHHHhccCCCceeeec-cCC-CCCCCCCCCccEEEEecChhhHHHHH
Q psy16206 48 YDSLHTAKLMCNATSE-GIAAIFGPQSIENRNIIESMCQMFDIPHVEAF-WDP-NKYFIPTNGVHGVNVYPESHLISKGI 124 (821)
Q Consensus 48 ~~~~~a~~~a~~li~~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~-~~~-~~~~~~~~~~~~~r~~p~~~~~~~al 124 (821)
.++......+-.-+++ |+..|+=|..+.-.. .-.+=+.-+||+|+.. .+. +......+.+-++-+.+.- +....
T Consensus 58 ~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~-~d~iq~~~~iPllhIidaTa~~ik~~g~kkvgLLgT~~Tm--~~~fY 134 (230)
T COG1794 58 DEAGEILIDAAKKLERAGADFIVLPTNTMHKV-ADDIQKAVGIPLLHIIDATAKAIKAAGAKKVGLLGTRFTM--EQGFY 134 (230)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHH-HHHHHHhcCCCeehHHHHHHHHHHhcCCceeEEeeccchH--HhHHH
Confidence 3455544444444455 999999887654322 2445567889998762 111 1100122233344444332 23344
Q ss_pred HHHHHhCCCCEEEEEEecCCchhHHHHHHHh-cCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCC
Q psy16206 125 SVIINDMDWDTFTIIYETHDNLVYLQQVLEN-AHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCS 202 (821)
Q Consensus 125 ~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~ 202 (821)
-+.+..+| +-++..|+++...+..+.-+ .. .|. +. +....-|...++++++.+++.|++.|.
T Consensus 135 ~~~l~~~g---ievvvPdd~~q~~v~~iIy~El~--------~G~-~~----~~sr~~~~~ii~~l~~~Gae~vIlGCT 197 (230)
T COG1794 135 RKRLEEKG---IEVVVPDDDEQAEVNRIIYEELC--------QGI-VK----DASRELYLAVIERLAERGAEGVILGCT 197 (230)
T ss_pred HHHHHHCC---ceEecCCHHHHHHHHHHHHHHHh--------ccc-ch----HHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 44455555 44555555554444443332 32 121 11 011233666777787778888888775
No 275
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional
Probab=52.57 E-value=52 Score=34.53 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=47.5
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
++-..++..+.+.. ++++++.. .+-+.++++|.+|++|+++...... ... ..+.|+.....+
T Consensus 104 ~~~~~~l~~~~~~~P~v~i~~~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~-l~~~~l~~~~~~ 166 (305)
T PRK11151 104 YLLPHIIPMLHQTFPKLEMYLHE-------------AQTHQLLAQLDSGKLDCAILALVKE---SEA-FIEVPLFDEPML 166 (305)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEe-------------CCHHHHHHHHHcCCccEEEEecCCC---CCC-eEEEEeccCcEE
Confidence 34456777776653 56666652 2457899999999999998643221 122 245789999999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
+++++..+
T Consensus 167 ~~~~~~hp 174 (305)
T PRK11151 167 LAVYEDHP 174 (305)
T ss_pred EEecCCCC
Confidence 99887654
No 276
>cd08466 PBP2_LeuO The C-terminal substrate binding domain of LysR-type transcriptional regulator LeuO, an activator of leucine synthesis operon, contains the type 2 periplasmic binding fold. LeuO, a LysR-type transcriptional regulator, was originally identified as an activator of the leucine synthesis operon (leuABCD). Subsequently, LeuO was found to be not a specific regulator of the leu gene but a global regulator of unrelated various genes. LeuO activates bglGFB (utilization of beta-D-glucoside) and represses cadCBA (lysine decarboxylation) and dsrA (encoding a regulatory small RNA for translational control of rpoS and hns). LeuO also regulates the yjjQ-bglJ operon which coding for a LuxR-type transcription factor. In Salmonella enterica serovar Typhi, LeuO is a positive regulator of ompS1 (encoding an outer membrane), ompS2 (encoding a pathogenicity determinant), and assT, while LeuO represses the expression of OmpX and Tpx. Both osmS1 and osmS2 influence virulence in the mouse mo
Probab=52.27 E-value=44 Score=31.83 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=49.1
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. .++...+...|.+|++|+++... +.....+ -+.|+.....+
T Consensus 13 ~~l~~~l~~f~~~~P~v~l~~~-------------~~~~~~~~~~l~~g~~Dl~i~~~---~~~~~~~-~~~~l~~~~~~ 75 (200)
T cd08466 13 LLLPRLLARLKQLAPNISLRES-------------PSSEEDLFEDLRLQEVDLVIDYV---PFRDPSF-KSELLFEDELV 75 (200)
T ss_pred HHHHHHHHHHHHHCCCCEEEEe-------------cCchHhHHHHHHcCCccEEEecc---cCCCCCc-eeeeecccceE
Confidence 44568888887775 6777776 33567899999999999997532 2222223 24578888999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 lv~~~~~~ 83 (200)
T cd08466 76 CVARKDHP 83 (200)
T ss_pred EEEeCCCC
Confidence 99887754
No 277
>cd08415 PBP2_LysR_opines_like The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefa
Probab=51.64 E-value=43 Score=31.65 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=48.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++.. ++..++..+|.+|++|+++..... . ...+ .+.|+.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~i~~-------------~~~~~~~~~l~~~~~Dl~i~~~~~--~-~~~~-~~~~l~~~~~~ 75 (196)
T cd08415 13 SLLPRAIARFRARHPDVRISLHT-------------LSSSTVVEAVLSGQADLGLASLPL--D-HPGL-ESEPLASGRAV 75 (196)
T ss_pred cccHHHHHHHHHHCCCcEEEEEe-------------cchHHHHHHHHcCCccEEEEeCCC--C-CCcc-eeeeecccceE
Confidence 44568888887765 67777763 356789999999999999863322 1 2222 36688888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~v~~~~~~ 83 (196)
T cd08415 76 CVLPPGHP 83 (196)
T ss_pred EEEcCCCC
Confidence 88887643
No 278
>cd08433 PBP2_Nac The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold. The NAC is a LysR-type transcription regulator that activates expression of operons such as hut (histidine utilization) and ure (urea utilization), allowing use of non-preferred (poor) nitrogen sources, and represses expression of operons, such as glutamate dehydrogenase (gdh), allowing assimilation of the preferred nitrogen source. The expression of the nac gene is fully dependent on the nitrogen regulatory system (NTR) and the sigma54-containing RNA polymerase (sigma54-RNAP). In response to nitrogen starvation, NTR system activates the expression of nac, and NAC activates the expression of hut, ure, and put (proline utilization). NAC is not involved in the transcription of Sigma70-RNAP operons such as glnA, which directly respond by the NTR system, but activates the transcription of sigma70-RNAP dependent operons such as hut.
Probab=50.90 E-value=42 Score=31.86 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=47.0
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++.. .+-..+.+.|.+|++|+++... +.....+ -+.|+.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~i~~~~-------------~~~~~~~~~l~~~~~D~~i~~~---~~~~~~~-~~~~l~~~~~~ 75 (198)
T cd08433 13 VLAVPLLRAVRRRYPGIRLRIVE-------------GLSGHLLEWLLNGRLDLALLYG---PPPIPGL-STEPLLEEDLF 75 (198)
T ss_pred hcchHHHHHHHHHCCCcEEEEEe-------------cCcHHHHHHHhCCCCcEEEEeC---CCCCCCe-eEEEeccccEE
Confidence 34467788887775 56777763 2346789999999999997532 2222222 34578888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~~~~~~~~ 83 (198)
T cd08433 76 LVGPADAP 83 (198)
T ss_pred EEecCCCc
Confidence 88887644
No 279
>TIGR00363 lipoprotein, YaeC family. This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Included in this family is the E. coli hypothetical protein yaeC. About half of the proteins between the noise and trusted cutoffs contain the consensus lipoprotein signature and may belong to this family.
Probab=50.64 E-value=32 Score=35.28 Aligned_cols=32 Identities=6% Similarity=0.001 Sum_probs=27.4
Q ss_pred HHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEe
Q psy16206 450 NELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAIC 493 (821)
Q Consensus 450 ~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~ 493 (821)
++.|++++++.++ +|.....+|..|++|+...
T Consensus 42 ~~~G~~Ve~~~f~------------d~~~~~~Al~~G~ID~~~~ 73 (258)
T TIGR00363 42 EKYGLDVELVEFN------------DYALPNEAVSKGDLDANAF 73 (258)
T ss_pred HhcCCEEEEEEeC------------CcHHHHHHHHcCCCCeEec
Confidence 3479999999886 6889999999999999743
No 280
>cd08453 PBP2_IlvR The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold. The IlvR is an activator of the upstream and divergently transcribed ilvD gene, which encodes dihydroxy acid dehydratase that participates in isoleucine, leucine, and valine biosynthesis. As in the case of other members of the LysR family, the expression of ilvR gene is repressed in the presence of its own gene product. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport
Probab=49.62 E-value=60 Score=30.89 Aligned_cols=73 Identities=8% Similarity=0.046 Sum_probs=48.1
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++.. +........|.+|++|+++............+ -+.|+.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~i~~-------------~~~~~~~~~l~~g~~D~~i~~~~~~~~~~~~~-~~~~l~~~~~~ 78 (200)
T cd08453 13 SVLPELVRRFREAYPDVELQLRE-------------ATSDVQLEALLAGEIDAGIVIPPPGASAPPAL-AYRPLLSEPLV 78 (200)
T ss_pred HHHHHHHHHHHHhCCCceEEEEe-------------CCHHHHHHHHHcCCCCEEEEecCcccCCCcce-eEEEeeeCceE
Confidence 34567888887765 66777762 34677899999999999875322111112222 25677888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 79 ~v~~~~hp 86 (200)
T cd08453 79 LAVPAAWA 86 (200)
T ss_pred EEEECCCc
Confidence 88887654
No 281
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=49.52 E-value=16 Score=38.87 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=28.0
Q ss_pred HHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEe
Q psy16206 448 IANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAIC 493 (821)
Q Consensus 448 ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~ 493 (821)
+.++.|++++++..+ ++..++.++..|++|++..
T Consensus 45 f~~~~Gl~Ve~~~~~------------~~~~~~~al~~G~~D~a~~ 78 (320)
T PRK11480 45 FAKESGATVDWRKFD------------SGASIVRALASGDVQIGNL 78 (320)
T ss_pred hHHHcCCeeEEEEeC------------CHHHHHHHHHCCCCCEECc
Confidence 345679999998775 6788999999999999853
No 282
>cd08446 PBP2_Chlorocatechol The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of LysR-type regulators CbnR, ClcR and TfdR, which are involved in the regulation of chlorocatechol breakdown. The chlorocatechol-degradative pathway is often found in bacteria that can use chlorinated aromatic compounds as carbon and energy sources. CbnR is found in the 3-chlorobenzoate degradative bacterium Ralstonia eutropha NH9 and forms a tetramer. CbnR activates the expression of the cbnABCD genes, which are responsible for the degradation of chlorocatechol converted from 3-chlorobenzoate and are transcribed divergently from cbnR. In soil bacterium Pseudomonas putida, the 3-chlorocatechol-degradative pathway is encoded by clcABD operon, which requires the divergently transcribed clcR for activation. TfdR is involved in the activation of tf
Probab=49.40 E-value=55 Score=31.02 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=47.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++ .+++..+.+.|.+|++|+++.... .....+ -+.++......
T Consensus 14 ~~l~~~i~~~~~~~P~v~l~i~-------------~~~~~~~~~~l~~~~~Dl~i~~~~---~~~~~~-~~~~l~~~~~~ 76 (198)
T cd08446 14 DTVPRLLRAFLTARPDVTVSLH-------------NMTKDEQIEALRAGRIHIGFGRFY---PVEPDI-AVENVAQERLY 76 (198)
T ss_pred HHHHHHHHHHHHHCCCeEEEEe-------------eCCHHHHHHHHHCCCccEEEEecC---CCCCCc-eeEEeeeccEE
Confidence 44567788887765 5667766 335778999999999999975322 112222 24577888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 77 ~v~~~~~p 84 (198)
T cd08446 77 LAVPKSHP 84 (198)
T ss_pred EEEeCCCC
Confidence 88887654
No 283
>cd08451 PBP2_BudR The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of BudR regulator, which is responsible for induction of the butanediol formation pathway under fermentative growth conditions. Three enzymes are involved in the production of 1 mol of 2,3 butanediol from the condensation of 2 mol of pyruvate with acetolactate and acetoin as intermediates: acetolactate synthetase, acetolactate decarboxylase, and acetoin reductase. In Klebsiella terrigena, BudR regulates the expression of the budABC operon genes, encoding these three enzymes of the butanediol pathway. In many bacterial species, the use of this pathway can prevent intracellular acidification by diverting metabolism from acid production to the formation of neutral compounds (acetoin and butanediol). This substra
Probab=49.36 E-value=50 Score=31.25 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=47.7
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.++++.+.++. +.+++++ .++..++.+.+.+|++|+++...... ....+ .+.+++....++
T Consensus 15 ~l~~~l~~~~~~~P~i~l~i~-------------~~~~~~~~~~l~~g~~Dl~i~~~~~~--~~~~~-~~~~l~~~~~~~ 78 (199)
T cd08451 15 LVPGLIRRFREAYPDVELTLE-------------EANTAELLEALREGRLDAAFVRPPVA--RSDGL-VLELLLEEPMLV 78 (199)
T ss_pred ccHHHHHHHHHHCCCcEEEEe-------------cCChHHHHHHHHCCCccEEEEecCCC--CCCce-eEEEeecccEEE
Confidence 3467888887775 6777776 33567889999999999997532211 11222 346788888888
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 79 v~~~~~~ 85 (199)
T cd08451 79 ALPAGHP 85 (199)
T ss_pred EecCCCC
Confidence 8876643
No 284
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=48.19 E-value=15 Score=35.54 Aligned_cols=102 Identities=27% Similarity=0.380 Sum_probs=58.8
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeeehhhhhhhhhhcccccccccch
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILFFIYSILFFIYTFVNEAVSTRL 760 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 760 (821)
|+..|+..|+++.+.++.|++++++.. .|..+...+.++..+..+... .....|-
T Consensus 20 g~~~G~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~------------~~~~~~~ 74 (219)
T smart00062 20 GELTGFDVDLAKAIAKELGLKVEFVEV-------------SFDNLLTALKSGKIDVVAAGM------------TITPERA 74 (219)
T ss_pred CCcccchHHHHHHHHHHhCCeEEEEec-------------cHHHHHHHHHCCcccEEeccc------------cCCHHHH
Confidence 456799999999999999999888753 266677777766555332100 0000110
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 761 VAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 761 ~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
- .+. ++ ...+... ..++ +++ ..+|++++||. +.++|+..+++...++
T Consensus 75 ~--~~~-~~---~~~~~~~-~~~~-~~~-~~~~~~~~dL~---g~~i~~~~g~~~~~~~ 121 (219)
T smart00062 75 K--QVD-FS---DPYYKSG-QVIL-VRK-DSPIKSLEDLK---GKKVAVVAGTTGEELL 121 (219)
T ss_pred h--hee-ec---cceeece-eEEE-Eec-CCCCCChHHhC---CCEEEEecCccHHHHH
Confidence 0 000 00 0011111 1222 233 45699999996 4789999887776554
No 285
>cd08440 PBP2_LTTR_like_4 TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse funct
Probab=48.01 E-value=55 Score=30.77 Aligned_cols=70 Identities=9% Similarity=0.087 Sum_probs=48.4
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++.. ++..++.+.|.+|++|+++.... .....+. +.++.....+
T Consensus 13 ~~l~~~l~~~~~~~p~v~i~i~~-------------~~~~~~~~~l~~g~~D~~i~~~~---~~~~~~~-~~~l~~~~~~ 75 (197)
T cd08440 13 TLLPPVLAAFRRRHPGIRVRLRD-------------VSAEQVIEAVRSGEVDFGIGSEP---EADPDLE-FEPLLRDPFV 75 (197)
T ss_pred hHHHHHHHHHHHhCCCcEEEEEe-------------CChHHHHHHHHcCCccEEEEeCC---CCCCCee-EEEeecccEE
Confidence 45578888887765 56777762 35678999999999999976322 2222232 4578888889
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~~~~~~~p 83 (197)
T cd08440 76 LVCPKDHP 83 (197)
T ss_pred EEecCCCC
Confidence 88887654
No 286
>TIGR02136 ptsS_2 phosphate binding protein. Members of this family are phosphate-binding proteins. Most are found in phosphate ABC-transporter operons, but some are found in phosphate regulatory operons. This model separates members of the current family from the phosphate ABC transporter phosphate binding protein described by TIGRFAMs model TIGR00975.
Probab=47.13 E-value=41 Score=35.14 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=48.8
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhh-----hcceee-cccc
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSER-----RAAVDF-TMPF 511 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R-----~~~~~f-S~p~ 511 (821)
.+-.+++..+.++. ++++++. .+...++++.|.+|++|+++..-...++. .+..++ ..|+
T Consensus 48 ~~lp~~l~~f~~~~P~i~v~i~-------------~~~s~~l~~~L~~G~iDlai~~~~~~~~~~~~~~~~~~~l~~~~l 114 (287)
T TIGR02136 48 PLAEAAAEEFQKIHPGVSVTVQ-------------GAGSGTGIKALINGTVDIGNSSRPIKDEELQKDKQKGIKLIEHKV 114 (287)
T ss_pred HHHHHHHHHHHhhCCCceEEEc-------------cCCchHHHHHHHcCCCchhhccCCCCHHHHHHHhhcCCCceEEEE
Confidence 34457777777766 5666665 34678999999999999987533223222 111222 4588
Q ss_pred eeeceEEEEEcCC
Q psy16206 512 MTLGISILYRKPA 524 (821)
Q Consensus 512 ~~~~~~l~~~~~~ 524 (821)
.....+++++++.
T Consensus 115 ~~~~l~lvv~~~h 127 (287)
T TIGR02136 115 AVDGLAVVVNKKN 127 (287)
T ss_pred EEeeEEEEECCCC
Confidence 8899999988765
No 287
>cd08420 PBP2_CysL_like C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold. CysL, also known as YwfK, is a regular of sulfur metabolism in Bacillus subtilis. Sulfur is required for the synthesis of proteins and essential cofactors in all living organism. Sulfur can be assimilated either from inorganic sources (sulfate and thiosulfate), or from organic sources (sulfate esters, sulfamates, and sulfonates). CysL activates the transcription of the cysJI operon encoding sulfite reductase, which reduces sulfite to sulfide. Both cysL mutant and cysJI mutant are unable to grow using sulfate or sulfite as the sulfur source. Like other LysR-type regulators, CysL also negatively regulates its own transcription. In Escherichia coli, three LysR-type activators are involved in the regulation of sulfur metabolism: CysB, Cbl and MetR. The topology
Probab=46.82 E-value=62 Score=30.49 Aligned_cols=70 Identities=9% Similarity=0.146 Sum_probs=47.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++. ++-..+.++|.+|++|+++..... ..+.+. +.|+......
T Consensus 13 ~~l~~~l~~~~~~~P~~~l~~~~-------------~~~~~~~~~l~~g~~D~~i~~~~~---~~~~~~-~~~l~~~~~~ 75 (201)
T cd08420 13 YLLPRLLARFRKRYPEVRVSLTI-------------GNTEEIAERVLDGEIDLGLVEGPV---DHPDLI-VEPFAEDELV 75 (201)
T ss_pred hhhHHHHHHHHHHCCCceEEEEe-------------CCcHHHHHHHHCCCccEEEecCCC---CCcceE-EEeecCccEE
Confidence 44567888887775 67777763 245678999999999998763322 222232 4578888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~v~~~~~~ 83 (201)
T cd08420 76 LVVPPDHP 83 (201)
T ss_pred EEecCCCC
Confidence 88887654
No 288
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=46.26 E-value=1e+02 Score=28.81 Aligned_cols=79 Identities=9% Similarity=-0.005 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEe
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLD 200 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~ 200 (821)
+..+..+.++++-+++.++-++-..-...+.+++.+. +.|..+.+... ++..+.+++ +..+.+++++.
T Consensus 16 GQV~~~W~~~~~~~~IvVvdD~~A~D~~~k~~l~ma~-------P~gvk~~i~sv----~~a~~~l~~-~~~~~~v~il~ 83 (157)
T PRK11425 16 GQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVL-------AEGIAVRFWTL----QKVIDNIHR-AADRQKILLVC 83 (157)
T ss_pred HHhhhhhhcccCCCEEEEEcchhcCCHHHHHHHHhhC-------CCCCeEEEEEH----HHHHHHHhc-cCCCceEEEEE
Confidence 5677888899999888777555555555666777666 77777776664 345555665 44556788888
Q ss_pred CChhHHHHHHH
Q psy16206 201 CSMDKTVTILK 211 (821)
Q Consensus 201 ~~~~~~~~~l~ 211 (821)
-++.++..+++
T Consensus 84 k~~~d~~~l~~ 94 (157)
T PRK11425 84 KTPADFLTLVK 94 (157)
T ss_pred CCHHHHHHHHH
Confidence 88888888776
No 289
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=45.97 E-value=48 Score=34.59 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=46.6
Q ss_pred eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhccee
Q psy16206 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVD 506 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~ 506 (821)
++ ..+.+.+.++.|=++++.+++.+..| +-.++++++..|.+||+.........+...+.
T Consensus 14 ~~-~~fa~~v~e~t~G~v~i~v~~~g~lg-------~~~e~~~~v~~G~vdm~~~~~~~~~~~~p~~~ 73 (286)
T PF03480_consen 14 AV-EKFAEEVEERTGGRVKIEVFPAGQLG-------KEAEVLEAVQDGAVDMAVVSPSYLAGFVPEFG 73 (286)
T ss_dssp HH-HHHHHHHHHHTTTSEEEEEEETTSSS-------SHHHHHHHHHTTSSSEEEEEGGGGTTTSGGGG
T ss_pred HH-HHHHHHHHHHcCCeEEEEEecCcccC-------CHHHHHHHHhCCCccEEeecchhhhhhchhhe
Confidence 44 68889999999999999998866544 45789999999999999876655555544433
No 290
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=45.90 E-value=4.4e+02 Score=29.56 Aligned_cols=125 Identities=11% Similarity=-0.040 Sum_probs=67.6
Q ss_pred CcEEEEeCCCc-------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE-------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~-------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~ 73 (821)
+|||.+.-..+ +..+...+..++.+|+.+ ++++..+.-..++..+.+++.++-.+++++||=...
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~ 72 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELP--------VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMH 72 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCC--------ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEccc
Confidence 46776665444 334555555666666542 244444412135555444444444448888886544
Q ss_pred c-chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEE
Q psy16206 74 I-ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTII 139 (821)
Q Consensus 74 s-~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii 139 (821)
+ .....+...+...++|++-++..+.. ..+ . ..+..++.. -...+...++++|.+...+.
T Consensus 73 tf~~~~~~~~~~~~~~~Pvll~a~~~~~-~~~---~-~~~~~~s~~-g~~~~~~~l~r~gi~~~~v~ 133 (452)
T cd00578 73 TFGPAKMWIAGLSELRKPVLLLATQFNR-EIP---D-FMNLNQSAC-GLREFGNILARLGIPFKVVY 133 (452)
T ss_pred ccccHHHHHHHHHhcCCCEEEEeCCCCC-CCC---c-hhhhhcchh-hhHHHHHHHHHcCCceeEEE
Confidence 4 44455677788899999988643321 111 1 112233322 23566677888886654443
No 291
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=45.69 E-value=1e+02 Score=28.69 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEe
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLD 200 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~ 200 (821)
+..+..++++++-+++.++-+.-..-...+.+++.+. +.|..+.+.... +....+++-+..+.+++++.
T Consensus 14 GQV~~~W~~~~~~~~IiVvdD~~A~D~~~k~~lkma~-------P~gvk~~i~sve----~a~~~l~~~~~~~~~v~vl~ 82 (151)
T TIGR00854 14 GQVGTTWTKVAGANRIIVVNDDVANDEVRQTLMGIVA-------PTGFKVRFVSLE----KTINVIHKPAYHDQTIFLLF 82 (151)
T ss_pred hHhhhhhhcccCCCEEEEEcccccCCHHHHHHHHhhC-------CCCCEEEEEEHH----HHHHHHhCcCCCCceEEEEE
Confidence 5667778889998988888665555556666777766 677777666542 23344444344466888999
Q ss_pred CChhHHHHHHH
Q psy16206 201 CSMDKTVTILK 211 (821)
Q Consensus 201 ~~~~~~~~~l~ 211 (821)
-++.++..+++
T Consensus 83 k~~~da~~l~~ 93 (151)
T TIGR00854 83 RNPQDVLTLVE 93 (151)
T ss_pred CCHHHHHHHHH
Confidence 99999888876
No 292
>cd08448 PBP2_LTTR_aromatics_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type regulator similar to CbnR which is involved in the regulation of chlorocatechol breakdown. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Ve
Probab=45.66 E-value=68 Score=30.21 Aligned_cols=70 Identities=9% Similarity=-0.043 Sum_probs=48.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++. ++..++...+.+|++|+++.... .....+. +.++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~i~i~~-------------~~~~~~~~~l~~~~~Di~i~~~~---~~~~~~~-~~~l~~~~~~ 75 (197)
T cd08448 13 RGLPRILRAFRAEYPGIEVALHE-------------MSSAEQIEALLRGELDLGFVHSR---RLPAGLS-ARLLHREPFV 75 (197)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEe-------------CCHHHHHHHHHcCCcceEEEeCC---CCCcCce-EEEEecCcEE
Confidence 45578888887776 67777763 35678999999999999875321 2223332 4578888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
+++++..+
T Consensus 76 ~~~~~~hp 83 (197)
T cd08448 76 CCLPAGHP 83 (197)
T ss_pred EEeeCCCC
Confidence 88887643
No 293
>PRK12683 transcriptional regulator CysB-like protein; Reviewed
Probab=45.59 E-value=68 Score=33.85 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEE
Q psy16206 441 SVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISIL 519 (821)
Q Consensus 441 ~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~ 519 (821)
-..++..+.++. +.++++. .+++++++..|.+|++|+++...... ....+.+ .|+.....+++
T Consensus 108 l~~~i~~f~~~~P~i~l~~~-------------~~~~~~~~~~L~~~~~D~~i~~~~~~--~~~~l~~-~~l~~~~~~~v 171 (309)
T PRK12683 108 LPKVVRQFKEVFPKVHLALR-------------QGSPQEIAEMLLNGEADIGIATEALD--REPDLVS-FPYYSWHHVVV 171 (309)
T ss_pred HHHHHHHHHHHCCCceEEEE-------------eCCHHHHHHHHHcCCccEEEecCCCC--CCCCceE-EEcccCeEEEE
Confidence 457778777665 6677776 33688999999999999987532111 1223433 47777888888
Q ss_pred EEcCCC
Q psy16206 520 YRKPAK 525 (821)
Q Consensus 520 ~~~~~~ 525 (821)
++++.+
T Consensus 172 ~~~~hp 177 (309)
T PRK12683 172 VPKGHP 177 (309)
T ss_pred ecCCCC
Confidence 887654
No 294
>cd08465 PBP2_ToxR The C-terminal substrate binding domain of LysR-type transcriptional regulator ToxR regulates the expression of the toxoflavin biosynthesis genes; contains the type 2 periplasmic bindinig fold. In soil bacterium Burkholderia glumae, ToxR regulates the toxABCDE and toxFGHI operons in the presence of toxoflavin as a coinducer. Additionally, the expression of both operons requires a transcriptional activator, ToxJ, whose expression is regulated by the TofI or TofR quorum-sensing system. The biosynthesis of toxoflavin is suggested to be synthesized in a pathway common to the synthesis of riboflavin. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After
Probab=45.56 E-value=60 Score=31.07 Aligned_cols=69 Identities=9% Similarity=0.118 Sum_probs=46.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
++-.+++..+.++. +.++++. .++...+++.|.+|++|+++..... ....+. +.|+.....+
T Consensus 13 ~~l~~~l~~f~~~~P~i~l~i~-------------~~~~~~~~~~L~~g~~Dl~i~~~~~---~~~~~~-~~~l~~~~~~ 75 (200)
T cd08465 13 LVLPALMRQLRAEAPGIDLAVS-------------QASREAMLAQVADGEIDLALGVFPE---LPEELH-AETLFEERFV 75 (200)
T ss_pred HhhhHHHHHHHHHCCCcEEEEe-------------cCChHhHHHHHHCCCccEEEecccc---CCcCee-EEEeeeccEE
Confidence 44567888886653 5666666 3367889999999999999753221 122333 3477788888
Q ss_pred EEEEcCC
Q psy16206 518 ILYRKPA 524 (821)
Q Consensus 518 l~~~~~~ 524 (821)
++++++.
T Consensus 76 lv~~~~h 82 (200)
T cd08465 76 CLADRAT 82 (200)
T ss_pred EEEeCCC
Confidence 8888764
No 295
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=45.52 E-value=3.9e+02 Score=28.12 Aligned_cols=164 Identities=9% Similarity=0.090 Sum_probs=83.7
Q ss_pred EEEEEEEecCC-ChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccC-CCceeeeccCCCCCCCCCCCccEEEEec
Q psy16206 38 LEPIVQHVENY-DSLHTAKLMCNATSEGIAAIFGPQSIENRNIIESMCQMF-DIPHVEAFWDPNKYFIPTNGVHGVNVYP 115 (821)
Q Consensus 38 l~~~~~D~~~~-~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~-~iP~is~~~~~~~~~~~~~~~~~~r~~p 115 (821)
+++...+ ... ++....+..+++.++|...||++... ...++..++..+ ++-++........ . .+++.....
T Consensus 35 i~~~~~e-~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~-~~~~~~~vA~~yPd~~F~~~d~~~~~---~--~~Nv~~~~f 107 (306)
T PF02608_consen 35 IEIIYVE-NVPETDADYEEAIRQLADQGYDLIIGHGFE-YSDALQEVAKEYPDTKFIIIDGYIDA---P--EPNVISITF 107 (306)
T ss_dssp EEEEEEE-S-S-TCHHHHHHHHHHHHTT-SEEEEESGG-GHHHHHHHHTC-TTSEEEEESS---S---T---TTEEEEEE
T ss_pred ceEEEEe-cCCccHHHHHHHHHHHHHcCCCEEEEccHH-HHHHHHHHHHHCCCCEEEEEecCcCC---C--CCcEEEEEc
Confidence 6777776 323 46667777888888899999985543 345566777776 4544444332221 1 134444444
Q ss_pred Chh---hHHHHHHHHHHhCCCCEEEEEE---ecC-Cc----hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCC--CCCCh
Q psy16206 116 ESH---LISKGISVIINDMDWDTFTIIY---ETH-DN----LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPP--DTDDY 182 (821)
Q Consensus 116 ~~~---~~~~al~~~~~~~~w~~v~ii~---~~~-~~----~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~--~~~d~ 182 (821)
... .++-++|.++..- .+++.+. ..+ .. ...+..=.+... + .+.+....... +...-
T Consensus 108 ~~~e~~fLaG~~Aa~~tkt--~~vg~ig~i~G~~~p~~~~~~~gF~~Ga~~~n-------p-~i~v~~~~~gs~~D~~~~ 177 (306)
T PF02608_consen 108 REEEASFLAGYLAALMTKT--GKVGFIGDIGGMDIPPVNRFINGFIAGAKYVN-------P-DIKVNVSYTGSFNDPAKA 177 (306)
T ss_dssp -HHHHHHHHHHHHHHHHSS--TEEEEEEEEES--SCTTHHHHHHHHHHHHHTT-------T-T-EEEEEE-SSSS-HHHH
T ss_pred cccchhHHHHHHHHHHhcc--CcccccccccCCCcHhHHHHHHHHHHHHHHhC-------c-CceEEEEEcCCcCchHHH
Confidence 432 2334444444443 5788887 333 22 223333233332 2 23343322221 12223
Q ss_pred HHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 183 RPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 183 ~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+..-+.|-+.++|+|+-.+.. ...-++++|++.|..
T Consensus 178 ~~~a~~li~~GaDvI~~~ag~-~~~gv~~aa~e~g~~ 213 (306)
T PF02608_consen 178 KEAAEALIDQGADVIFPVAGG-SGQGVIQAAKEAGVY 213 (306)
T ss_dssp HHHHHHHHHTT-SEEEEE-CC-CHHHHHHHHHHHTHE
T ss_pred HHHHHHHhhcCCeEEEECCCC-CchHHHHHHHHcCCc
Confidence 445566777899999986654 444688999998864
No 296
>cd08430 PBP2_IlvY The C-terminal substrate binding of LysR-type transcriptional regulator IlvY, which activates the expression of ilvC gene that encoding acetohydroxy acid isomeroreductase for the biosynthesis of branched amino acids; contains the type 2 periplasmic binding fold. In Escherichia coli, IlvY is required for the regulation of ilvC gene expression that encodes acetohydroxy acid isomeroreductase (AHIR), a key enzyme in the biosynthesis of branched-chain amino acids (isoleucine, valine, and leucine). The ilvGMEDA operon genes encode remaining enzyme activities required for the biosynthesis of these amino acids. Activation of ilvC transcription by IlvY requires the additional binding of a co-inducer molecule (either alpha-acetolactate or alpha-acetohydoxybutyrate, the substrates for AHIR) to a preformed complex of IlvY protein-DNA. Like many other LysR-family members, IlvY negatively auto-regulates the transcription of its own divergently transcribed ilvY gene in an inducer-i
Probab=45.33 E-value=50 Score=31.25 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=47.7
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++. +++..++++|.+|++|+++...... ....+. +.++......
T Consensus 13 ~~l~~~l~~~~~~~P~v~l~~~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~~--~~~~l~-~~~l~~~~~~ 76 (199)
T cd08430 13 SFLPPILERFRAQHPQVEIKLHT-------------GDPADAIDKVLNGEADIAIAARPDK--LPARLA-FLPLATSPLV 76 (199)
T ss_pred eeccHHHHHHHHHCCCceEEEEe-------------CCHHHHHHHHHCCCCCEEEEecCCC--CCcccE-EEeeccceEE
Confidence 34467888888887 67787763 3577889999999999997532111 112232 4567777788
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 77 ~~~~~~~~ 84 (199)
T cd08430 77 FIAPNIAC 84 (199)
T ss_pred EEEeCCch
Confidence 88776643
No 297
>PRK09791 putative DNA-binding transcriptional regulator; Provisional
Probab=44.98 E-value=80 Score=33.04 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=47.8
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. .++..++..+|.+|++|+++...... .....+. ..|+.....+
T Consensus 108 ~~l~~~l~~~~~~~p~i~~~~~-------------~~~~~~~~~~l~~g~~Di~i~~~~~~-~~~~~~~-~~~l~~~~~~ 172 (302)
T PRK09791 108 SLMPAVISRFHQQHPQVKVRIM-------------EGQLVSMINELRQGELDFTINTYYQG-PYDHEFT-FEKLLEKQFA 172 (302)
T ss_pred hhhHHHHHHHHHHCCCeEEEEE-------------eCChHHHHHHHHCCCccEEEEecCCc-cccccee-EEEeccceEE
Confidence 34467778777665 4555555 22567899999999999987522111 1122343 3688899999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 173 l~~~~~~~ 180 (302)
T PRK09791 173 VFCRPGHP 180 (302)
T ss_pred EEEcCCCC
Confidence 99887754
No 298
>cd08467 PBP2_SyrM The C-terminal substrate binding of LysR-type symbiotic regulator SyrM, which activates expression of nodulation gene NodD3, contains the type 2 periplasmic binding fold. Rhizobium is a nitrogen fixing bacteria present in the roots of leguminous plants, which fixes atmospheric nitrogen to the soil. Most Rhizobium species possess multiple nodulation (nod) genes for the development of nodules. For example, Rhizobium meliloti possesses three copies of nodD genes. NodD1 and NodD2 activate nod operons when Rhizobium is exposed to inducers synthesized by the host plant, while NodD3 acts independent of plant inducers and requires the symbiotic regulator SyrM for nod gene expression. SyrM activates the expression of the regulatory nodulation gene nodD3. In turn, NodD3 activates expression of syrM. In addition, SyrM is involved in exopolysaccharide synthesis. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are
Probab=44.84 E-value=59 Score=31.09 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=47.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. .+......+.|.+|++|+++.... .....+. ..++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~~~-------------~~~~~~~~~~l~~g~~D~~i~~~~---~~~~~~~-~~~l~~~~~~ 75 (200)
T cd08467 13 ALLPRLAPRLRERAPGLDLRLC-------------PIGDDLAERGLEQGTIDLAVGRFA---VPPDGLV-VRRLYDDGFA 75 (200)
T ss_pred HHHHHHHHHHHhhCCCCEEEEe-------------cCCcccHHHHhhCCCcCEEEecCC---CCCccce-eEEeeeccEE
Confidence 45567888887764 5677776 335567999999999999975321 1122233 4578888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~v~~~~h~ 83 (200)
T cd08467 76 CLVRHGHP 83 (200)
T ss_pred EEEcCCCc
Confidence 88887644
No 299
>PF12916 DUF3834: Protein of unknown function (DUF3834); InterPro: IPR024533 This family is likely to be related to solute-binding lipo-proteins.; PDB: 3MST_A.
Probab=44.65 E-value=24 Score=33.73 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=28.2
Q ss_pred eeHHHHH-HHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEec
Q psy16206 439 GYSVDLI-KMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICD 494 (821)
Q Consensus 439 G~~~dll-~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~ 494 (821)
|-..|++ +.+.+..|.+.|++..+ +|.++++++++|++|-++-+
T Consensus 77 GsaADvl~Ral~d~~~~~~EvVytd------------D~~~i~~Ml~~g~vdsAVv~ 121 (201)
T PF12916_consen 77 GSAADVLTRALLDLKGIKAEVVYTD------------DMSEIVKMLNEGEVDSAVVG 121 (201)
T ss_dssp TSHHHHHHHHHHHHH--T-EEEE---------------HHHHHHHHHTT-E--EEEE
T ss_pred ccHHHHHHHHHHhhccccceeEEec------------CHHHHHHHHhcCceeeeeec
Confidence 6677865 55666678899999764 79999999999999998754
No 300
>cd08419 PBP2_CbbR_RubisCO_like The C-terminal substrate binding of LysR-type transcriptional regulator (CbbR) of RubisCO operon, which is involved in the carbon dioxide fixation, contains the type 2 periplasmic binding fold. CbbR, a LysR-type transcriptional regulator, is required to activate expression of RubisCO, one of two unique enzymes in the Calvin-Benson-Bassham (CBB) cycle pathway. All plants, cyanobacteria, and many autotrophic bacteria use the CBB cycle to fix carbon dioxide. Thus, this cycle plays an essential role in assimilating CO2 into organic carbon on earth. The key CBB cycle enzyme is ribulose 1,5-bisphosphate carboxylase/oxygenase (RubisCO), which catalyzes the actual CO2 fixation reaction. The CO2 concentration affects the expression of RubisCO genes. It has also shown that NADPH enhances the DNA-binding ability of the CbbR. RubisCO is composed of eight large (CbbL) and eight small subunits (CbbS). The topology of this substrate-binding domain is most similar to t
Probab=44.60 E-value=61 Score=30.52 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=47.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++. +....+.++|.+|++|+++..... ....+ .+.++.....+
T Consensus 12 ~~l~~~l~~~~~~~P~i~l~i~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~~-~~~~l~~~~~~ 74 (197)
T cd08419 12 YFAPRLLGAFCRRHPGVEVSLRV-------------GNREQVLERLADNEDDLAIMGRPP---EDLDL-VAEPFLDNPLV 74 (197)
T ss_pred hHhhHHHHHHHHHCCCceEEEEE-------------CCHHHHHHHHhcCCccEEEecCCC---CCCCe-EEEEeccCCEE
Confidence 34567788887775 67777763 256778999999999999753221 11222 35678888889
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++.+.+
T Consensus 75 ~~~~~~~~ 82 (197)
T cd08419 75 VIAPPDHP 82 (197)
T ss_pred EEecCCCC
Confidence 88887653
No 301
>cd08459 PBP2_DntR_NahR_LinR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold. This CD includes LysR-like bacterial transcriptional regulators, DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. DntR from Burkholderia species controls genes encoding enzymes for oxidative degradation of the nitro-aromatic compound 2,4-dinitrotoluene. The active form of DntR is homotetrameric, consisting of a dimer of dimers. NahR is a salicylate-dependent transcription activator of the nah and sal operons for naphthalene degradation. Salicylic acid is an intermediate o
Probab=44.46 E-value=61 Score=30.86 Aligned_cols=70 Identities=20% Similarity=0.108 Sum_probs=48.5
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++. ++.+++...|.+|++|+++..... ....+ .+.|+.....+
T Consensus 13 ~~l~~~l~~~~~~~P~v~v~i~~-------------~~~~~~~~~l~~g~~D~~i~~~~~---~~~~l-~~~~l~~~~~~ 75 (201)
T cd08459 13 YFLPRLLAALREVAPGVRIETVR-------------LPVDELEEALESGEIDLAIGYLPD---LGAGF-FQQRLFRERYV 75 (201)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEe-------------cCccCHHHHhhCCCceEEEEcCCC---Ccccc-eEEEeecCceE
Confidence 34567888887775 56777762 345678999999999999753322 12233 35688888999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~v~~~~~~ 83 (201)
T cd08459 76 CLVRKDHP 83 (201)
T ss_pred EEEcCCCc
Confidence 88887654
No 302
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=44.21 E-value=75 Score=34.45 Aligned_cols=87 Identities=9% Similarity=0.064 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCC-chhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCCCcE
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHD-NLVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSSESH 196 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~~~~ 196 (821)
.+.+.+.+..+|++|+-||.+..- ....++++++.+. ..++.+.+. ...++ .+.....+..+++.++|.
T Consensus 17 l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~-------~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~ 89 (377)
T COG1454 17 LKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLD-------AAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDT 89 (377)
T ss_pred HHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHH-------hcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCE
Confidence 356777888899999999998864 3445555555554 445555544 34443 455777888999999999
Q ss_pred EEEeCCh--hHHHHHHHHHH
Q psy16206 197 ILLDCSM--DKTVTILKQAK 214 (821)
Q Consensus 197 ivl~~~~--~~~~~~l~~a~ 214 (821)
||-.+.+ -++...+.-..
T Consensus 90 iIalGGGS~~D~AK~i~~~~ 109 (377)
T COG1454 90 IIALGGGSVIDAAKAIALLA 109 (377)
T ss_pred EEEeCCccHHHHHHHHHHHh
Confidence 9988765 33444443333
No 303
>cd08429 PBP2_NhaR The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold. NhaR is a positive regulator of the LysR family and is known to be an activator of the nhaA gene encoding a Na(+)/H(+) antiporter. In Escherichia coli, NhaA is the vital antiporter that protects against high sodium stress, and it is essential for growth in high sodium levels, while NhaB becomes essential only if NhaA is not available. The nhaA gene of nhaAR operon is induced by monovalent cations. The nhaR of the operon activates nhaAR, as well as the osmC transcription which is induced at elevated osmolarity. OsmC is transcribed from the two overlapping promoters (osmCp1 and osmP2) and that NhaR is shown to activate only the expression of osmCp1. NhaR also activates the transcription of the pgaABCD operon which is required for production of the biofilm adhesion, poly-beta-1,6-N-acetyl-d-glucosamine
Probab=44.19 E-value=68 Score=31.04 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=46.0
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +++++++ .++..++++.|.+|++|+++........-...+ .+.|+.....+
T Consensus 13 ~~l~~~l~~f~~~~P~v~l~i~-------------~~~~~~~~~~L~~~~~D~~i~~~~~~~~~~~~~-~~~~l~~~~~~ 78 (204)
T cd08429 13 SIAYRLLEPAMDLHEPIRLVCR-------------EGKLEQLLADLALHRLDMVLADRPMPSSLDVKG-YSHRLGECGVS 78 (204)
T ss_pred HHHHHHHHHHHHhCCCcEEEEE-------------eCCHHHHHHHHHcCCccEEEecCCCccccchhe-eeccccccceE
Confidence 44567888877775 6777777 346889999999999999875332111100111 24577777777
Q ss_pred EEEEcC
Q psy16206 518 ILYRKP 523 (821)
Q Consensus 518 l~~~~~ 523 (821)
++++.+
T Consensus 79 ~~~~~~ 84 (204)
T cd08429 79 FFAAPP 84 (204)
T ss_pred EEecCC
Confidence 776544
No 304
>PRK00865 glutamate racemase; Provisional
Probab=44.09 E-value=70 Score=32.87 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=29.1
Q ss_pred HHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 56 LMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 56 ~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
.+..|.++|+.+|+=+..++.+.++..+-+..++|+|..
T Consensus 59 ~~~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvigi 97 (261)
T PRK00865 59 IVEFLLEYGVKMLVIACNTASAVALPDLRERYDIPVVGI 97 (261)
T ss_pred HHHHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEee
Confidence 334455559999998888877767677777788999873
No 305
>cd08427 PBP2_LTTR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functi
Probab=43.89 E-value=60 Score=30.56 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=48.5
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. .++.+.+.+.|.+|++|+++..... ......+ .+.++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~~~-------------~~~~~~~~~~l~~g~~Dl~i~~~~~-~~~~~~~-~~~~l~~~~~~ 77 (195)
T cd08427 13 GLLPRALARLRRRHPDLEVHIV-------------PGLSAELLARVDAGELDAAIVVEPP-FPLPKDL-VWTPLVREPLV 77 (195)
T ss_pred HHhHHHHHHHHHHCCCceEEEE-------------eCCcHHHHHHHHCCCCCEEEEcCCC-CccccCc-eEEEcccCcEE
Confidence 34567888887776 6777776 3356889999999999999763211 1102223 34677888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 78 ~v~~~~~p 85 (195)
T cd08427 78 LIAPAELA 85 (195)
T ss_pred EEECCCCC
Confidence 88887643
No 306
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=43.85 E-value=62 Score=25.61 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=30.6
Q ss_pred CCceEEEEEEE-EecCCChhHHHHHHHHHhhc-CeEEEEcCCCcch
Q psy16206 33 PPDIILEPIVQ-HVENYDSLHTAKLMCNATSE-GIAAIFGPQSIEN 76 (821)
Q Consensus 33 l~~~~l~~~~~-D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s~~ 76 (821)
++|++|.+.=. -....|+.+|.+...+-..+ |..||||-.-...
T Consensus 9 i~G~ei~yl~iv~~~~~d~d~Al~eM~e~A~~lGAnAVVGvr~d~s 54 (74)
T TIGR03884 9 IPGLQLYYLGIVSTESDNVDEIVENLREKVKAKGGMGLIAFRITCA 54 (74)
T ss_pred CCCeEEEEEEEEEEecCCHHHHHHHHHHHHHHcCCCEEEEEEEEcC
Confidence 67766632211 12334899999999998888 9999999765443
No 307
>cd08412 PBP2_PAO1_like The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily. This family includes the C-terminal substrate domain of a putative LysR-type transcriptional regulator from the plant pathogen Pseudomonas aeruginosa PAO1and its closely related homologs. The LysR-type transcriptional regulators (LTTRs) are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controll
Probab=43.76 E-value=57 Score=30.84 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=49.1
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++.. ++..++++.|.+|++|+++.... .....+ .+.|+.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~i~~-------------~~~~~~~~~l~~~~~D~~i~~~~---~~~~~~-~~~~l~~~~~~ 75 (198)
T cd08412 13 YYLPGLLRRFREAYPGVEVRVVE-------------GNQEELEEGLRSGELDLALTYDL---DLPEDI-AFEPLARLPPY 75 (198)
T ss_pred hhhHHHHHHHHHHCCCcEEEEEE-------------CCHHHHHHHHHcCCCcEEEEcCC---CCCccc-ceeeeeccceE
Confidence 45678888887776 67777763 34577899999999999975321 222333 24688888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~~~~~~~~ 83 (198)
T cd08412 76 VWLPADHP 83 (198)
T ss_pred EEecCCCC
Confidence 88887654
No 308
>cd08450 PBP2_HcaR The C-terminal substrate binding domain of LysR-type transcriptional regulator HcaR in involved in 3-phenylpropionic acid catabolism, contains the type2 periplasmic binding fold. HcaR, a member of the LysR family of transcriptional regulators, controls the expression of the hcA1, A2, B, C, and D operon, encoding for the 3-phenylpropionate dioxygenase complex and 3-phenylpropionate-2',3'-dihydrodiol dehydrogenase, that oxidizes 3-phenylpropionate to 3-(2,3-dihydroxyphenyl) propionate. Dioxygenases play an important role in protecting the cell against the toxic effects of dioxygen. The expression of hcaR is negatively auto-regulated, as for other members of the LysR family, and is strongly repressed in the presence of glucose. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, an
Probab=43.59 E-value=68 Score=30.26 Aligned_cols=70 Identities=9% Similarity=0.104 Sum_probs=47.6
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++. ++...++..|.+|++|+++..... . ...+ .+.++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~i~~-------------~~~~~~~~~l~~~~~Dl~i~~~~~--~-~~~~-~~~~l~~~~~~ 75 (196)
T cd08450 13 QWLPEVLPILREEHPDLDVELSS-------------LFSPQLAEALMRGKLDVAFMRPEI--Q-SDGI-DYQLLLKEPLI 75 (196)
T ss_pred hhHHHHHHHHHhhCCCcEEEEEe-------------cChHHHHHHHhcCCccEEEEeCCC--C-CCCc-EEEEEEccceE
Confidence 44567888887765 56777763 245678999999999999753221 1 2223 24677888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~~~~~~~p 83 (196)
T cd08450 76 VVLPADHR 83 (196)
T ss_pred EEecCCCC
Confidence 88887654
No 309
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=43.58 E-value=1.2e+02 Score=28.19 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEe
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLD 200 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~ 200 (821)
+..+..++++++-+++.++-++-..-...+.+++.+. +.|..+.+.... +....+++-+..+.+++++.
T Consensus 13 GQV~~~W~~~~~~~~IvVvdD~~A~D~~~k~~l~ma~-------P~gvk~~i~sve----~a~~~l~~~~~~~~~v~il~ 81 (151)
T cd00001 13 GQVATTWTKELNANRIIVVNDEVANDELRKTLLKLAA-------PPGVKLRIFTVE----KAIEAINSPKYDKQRVFLLF 81 (151)
T ss_pred hHhhhhhhcccCCCEEEEEcccccCCHHHHHHHHhhC-------CCCCeEEEEEHH----HHHHHHhCcCCCCceEEEEE
Confidence 5677888899999998888655555556666777666 677777766542 34444444344566788888
Q ss_pred CChhHHHHHHHH
Q psy16206 201 CSMDKTVTILKQ 212 (821)
Q Consensus 201 ~~~~~~~~~l~~ 212 (821)
-++.++..+++.
T Consensus 82 k~~~~~~~l~~~ 93 (151)
T cd00001 82 KNPQDVLRLVEG 93 (151)
T ss_pred CCHHHHHHHHHc
Confidence 988888888763
No 310
>cd08434 PBP2_GltC_like The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold. GltC, a member of the LysR family of bacterial transcriptional factors, activates the expression of gltA gene of glutamate synthase operon and is essential for cell growth in the absence of glutamate. Glutamate synthase is a heterodimeric protein that encoded by gltA and gltB, whose expression is subject to nutritional regulation. GltC also negatively auto-regulates its own expression. This substrate-binding domain has strong homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity,
Probab=43.30 E-value=64 Score=30.25 Aligned_cols=70 Identities=23% Similarity=0.440 Sum_probs=48.0
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-..++..+.++. +.++++. .+....+...+.+|++|+++.... .....+. +.++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~i~i~-------------~~~~~~~~~~l~~~~~Dl~i~~~~---~~~~~l~-~~~l~~~~~~ 75 (195)
T cd08434 13 SLVPDLIRAFRKEYPNVTFELH-------------QGSTDELLDDLKNGELDLALCSPV---PDEPDIE-WIPLFTEELV 75 (195)
T ss_pred hhhHHHHHHHHHhCCCeEEEEe-------------cCcHHHHHHHHHcCCccEEEEccC---CCCCCee-EEEeecceEE
Confidence 34467778887775 6677776 234567899999999999975322 2233333 3578888889
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~v~~~~~~ 83 (195)
T cd08434 76 LVVPKDHP 83 (195)
T ss_pred EEecCCCc
Confidence 88887654
No 311
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=43.16 E-value=1.8e+02 Score=27.87 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC-CCChHHHHHHhhcCCCcEE
Q psy16206 119 LISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD-TDDYRPLLKEIKNSSESHI 197 (821)
Q Consensus 119 ~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~-~~d~~~~l~~lk~~~~~~i 197 (821)
.....+.+.....+ .++.++....+-...+.+.+++.- + +..+... ...- ..+-...+++|.++++|++
T Consensus 35 dl~~~l~~~~~~~~-~~vfllG~~~~v~~~~~~~l~~~y-------P-~l~i~g~-~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 35 DLMEELCQRAGKEK-LPIFLYGGKPDVLQQLKVKLIKEY-------P-KLKIVGA-FGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred HHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHHHHHHC-------C-CCEEEEE-CCCCChHHHHHHHHHHHHcCCCEE
Confidence 35566666666666 688888777765555555555442 2 4555433 2221 2344668999999999999
Q ss_pred EEeCChhHHHHHHHHHH
Q psy16206 198 LLDCSMDKTVTILKQAK 214 (821)
Q Consensus 198 vl~~~~~~~~~~l~~a~ 214 (821)
++.+..+.-..++.+.+
T Consensus 105 ~VglG~PkQE~~~~~~~ 121 (177)
T TIGR00696 105 FVGLGCPKQEIWMRNHR 121 (177)
T ss_pred EEEcCCcHhHHHHHHhH
Confidence 99988877777776553
No 312
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=43.04 E-value=54 Score=33.61 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEecccc-ch-hhhcceeecccceeeceEEEE
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTI-TS-ERRAAVDFTMPFMTLGISILY 520 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~-t~-~R~~~~~fS~p~~~~~~~l~~ 520 (821)
+.+....+..+...+++.++ +....+.+|.+|++|.++.+-.. .. ..........++....+++++
T Consensus 161 ~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~GrvDa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 228 (259)
T PRK11917 161 KAIGEAAKKIGIDVKFSEFP------------DYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDSFEPQSYGIVT 228 (259)
T ss_pred HHHHHhhHhcCCceeEEecC------------CHHHHHHHHHcCCCcEEEecHHHHHHhhhcCCeecCCcCCCCceEEEE
Confidence 44455555566666666654 57888999999999998765332 11 111112222355556667777
Q ss_pred EcCC
Q psy16206 521 RKPA 524 (821)
Q Consensus 521 ~~~~ 524 (821)
++++
T Consensus 229 ~k~~ 232 (259)
T PRK11917 229 KKDD 232 (259)
T ss_pred eCCC
Confidence 7654
No 313
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=42.87 E-value=1.3e+02 Score=31.46 Aligned_cols=112 Identities=13% Similarity=0.015 Sum_probs=56.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc---chHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI---ENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s---~~~~ 78 (821)
+||++++.+........+...+...+. |.++.....+ +.....+.... +..++++++-+.+. ....
T Consensus 133 ~igvl~~~~~~~~~~~~~~~~~~a~~~------g~~l~~~~v~----~~~~~~~~~~~-l~~~~da~~~~~~~~~~~~~~ 201 (294)
T PF04392_consen 133 RIGVLYDPSEPNSVAQIEQLRKAAKKL------GIELVEIPVP----SSEDLEQALEA-LAEKVDALYLLPDNLVDSNFE 201 (294)
T ss_dssp EEEEEEETT-HHHHHHHHHHHHHHHHT------T-EEEEEEES----SGGGHHHHHHH-HCTT-SEEEE-S-HHHHHTHH
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHHc------CCEEEEEecC----cHhHHHHHHHH-hhccCCEEEEECCcchHhHHH
Confidence 688888876643333344333333332 3344433333 22223333333 44555566554444 3334
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
.+...+...++|+++... ... . ..-+....++...+++-.++++.+
T Consensus 202 ~i~~~~~~~~iPv~~~~~-~~v----~-~Gal~~~~~~~~~~G~~Aa~~a~~ 247 (294)
T PF04392_consen 202 AILQLANEAKIPVFGSSD-FYV----K-AGALGGYSVDYYEQGRQAAEMAVR 247 (294)
T ss_dssp HHHHHCCCTT--EEESSH-HHH----C-TT-SEEEE--HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEECCH-HHh----c-CCcEEEEccCHHHHHHHHHHHHHH
Confidence 567788999999998642 111 1 234577888999999988888766
No 314
>cd08437 PBP2_MleR The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold. MleR, a transcription activator of malolactic fermentation system, is found in gram-positive bacteria and belongs to the lysR family of bacterial transcriptional regulators. The mleR gene is required for the expression and induction of malolactic fermentation. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase dom
Probab=42.87 E-value=71 Score=30.26 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=47.4
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.++. +.++++.. ++...+.+.|.+|++|+++... ........+. +.++.....++
T Consensus 14 ~l~~~l~~~~~~~P~v~i~~~~-------------~~~~~~~~~l~~g~~Dl~i~~~-~~~~~~~~l~-~~~l~~~~~~~ 78 (198)
T cd08437 14 YFPKLAKDLIKTGLMIQIDTYE-------------GGSAELLEQLLQGDLDIALLGS-LTPLENSALH-SKIIKTQHFMI 78 (198)
T ss_pred HhHHHHHHHHHhCCceEEEEEE-------------cCHHHHHHHHHcCCCCEEEecC-CCCCCcccce-EEEeecceEEE
Confidence 4467778887765 45666652 3567899999999999997522 1111233343 46788888888
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 79 ~~~~~hp 85 (198)
T cd08437 79 IVSKDHP 85 (198)
T ss_pred EecCCCc
Confidence 8887654
No 315
>PRK11233 nitrogen assimilation transcriptional regulator; Provisional
Probab=42.70 E-value=1.5e+02 Score=31.00 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=46.4
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+..+++..+.++. +.++++.. +....+...|.+|++|+++.... .....+ .+.|+......+
T Consensus 106 ~~~~~l~~~~~~~p~i~l~~~~-------------~~~~~~~~~l~~g~~Di~i~~~~---~~~~~~-~~~~l~~~~~~l 168 (305)
T PRK11233 106 LTMPLLQAVRAEFPGIVLYLHE-------------NSGATLNEKLMNGQLDMAVIYEH---SPVAGL-SSQPLLKEDLFL 168 (305)
T ss_pred HHHHHHHHHHHHCCCcEEEEEE-------------CCcHHHHHHHHCCCCCEEEEcCC---cCCCCc-EEEEEeeeeEEE
Confidence 4467888887765 67777763 24567889999999999975321 112223 345888888888
Q ss_pred EEEcCC
Q psy16206 519 LYRKPA 524 (821)
Q Consensus 519 ~~~~~~ 524 (821)
+++++.
T Consensus 169 v~~~~~ 174 (305)
T PRK11233 169 VGTQDC 174 (305)
T ss_pred EEcCcc
Confidence 888663
No 316
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=42.39 E-value=1.6e+02 Score=30.14 Aligned_cols=178 Identities=16% Similarity=0.119 Sum_probs=95.7
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcC-CcceEEeccccchh--hhcc-e--eecccceeece
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQ-RADLAICDLTITSE--RRAA-V--DFTMPFMTLGI 516 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g-~~Di~~~~~~~t~~--R~~~-~--~fS~p~~~~~~ 516 (821)
++...+.++.|.++++..- .-..+...+++| .+|+.++.-..+.. .++. + +...+|.....
T Consensus 46 ~i~~~F~~~~~~~V~~~f~-------------gS~~l~~qIe~Ga~~D~fiSa~~~~~~~l~~~g~~~~~~~~~fa~n~l 112 (258)
T COG0725 46 EIAKQFEKETGVKVEVEFG-------------GSGALARQIEQGAPADLFISADDAYMDKLEDKGLIYADSRIVFAGNRL 112 (258)
T ss_pred HHHHHHHHHHCCeEEEEec-------------chHHHHHHHHcCCCcCEEEECCHHHHHHHHhcCCccCCceEEeeCCeE
Confidence 7888888888888888743 345577777776 58888664433322 2222 2 24568889999
Q ss_pred EEEEEcCCCCCCC-cccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEee-cCCChHHHHHHHHhhhc-----
Q psy16206 517 SILYRKPAKKQPD-LFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSA-KNSNVSLYQRMHSAMES----- 589 (821)
Q Consensus 517 ~l~~~~~~~~~~~-~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----- 589 (821)
++++++.+..... +.....+-. .|++... +......|....-....
T Consensus 113 vl~~~~~~~~~~~~~~~l~~~~~---------------------------~~lai~~p~~~P~G~ya~~~l~~~g~~~~~ 165 (258)
T COG0725 113 VLAVPKGSKKKIESLEDLLERPD---------------------------VRLAIGDPKTVPAGKYAKEALELLGLWYTL 165 (258)
T ss_pred EEEEeCCCccCcccHHHHhcCcC---------------------------cEEEecCCCCCCchHHHHHHHHHhchhhhc
Confidence 9999987653322 111111100 0222222 34445555332221111
Q ss_pred cCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeecc-eecCCCcccccCC----chhhccccccee
Q psy16206 590 SRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGG-LLDSKGYGIAMPT----SKFLAKFSFGFA 662 (821)
Q Consensus 590 ~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~k----~~l~~~in~al~ 662 (821)
....+...+.++.+..|.. |++|+.+.-...+.... .......++. ...+..+.+++.+ +++..++-..|.
T Consensus 166 ~~k~v~~~~v~~~l~~V~~-G~ad~g~vy~sd~~~~~-~~~~~~~~~~~~~~Pi~y~iav~~~~~~~~~A~~f~~fl~ 241 (258)
T COG0725 166 KDKLVLATNVRQALAYVET-GEADAGFVYVSDALLSK-KVKIVGVFPEDLHSPIVYPIAVLKNAKNPELAKEFVDFLL 241 (258)
T ss_pred cccEEecCcHHHHHHHHHc-CCCCeEEEEEEhhhccC-CceEEEEcccccCCCeEEEEEEEcCCCCHHHHHHHHHHHh
Confidence 1123456677788888888 88888665444222111 1112222332 2234667777777 355555555554
No 317
>cd08462 PBP2_NodD The C-terminal substsrate binding domain of NodD family of LysR-type transcriptional regulators that regulates the expression of nodulation (nod) genes; contains the type 2 periplasmic binding fold. The nodulation (nod) genes in soil bacteria play important roles in the development of nodules. nod genes are involved in synthesis of Nod factors that are required for bacterial entry into root hairs. Thirteen nod genes have been identified and are classified into five transcription units: nodD, nodABCIJ, nodFEL, nodMNT, and nodO. NodD is negatively auto-regulates its own expression of nodD gene, while other nod genes are inducible and positively regulated by NodD in the presence of flavonoids released by plant roots. This substrate-binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. T
Probab=42.21 E-value=70 Score=30.52 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=45.7
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-..++..+.++. +.+++++. ++. ++++.|.+|++|+++..... ....+. ..|+.....++
T Consensus 14 ~l~~~i~~~~~~~P~i~l~i~~-------------~~~-~~~~~l~~g~~D~~i~~~~~---~~~~~~-~~~l~~~~~~~ 75 (200)
T cd08462 14 LLPPVIERVAREAPGVRFELLP-------------PDD-QPHELLERGEVDLLIAPERF---MSDGHP-SEPLFEEEFVC 75 (200)
T ss_pred HHHHHHHHHHHHCCCCEEEEec-------------CCh-hHHHHHhcCCeeEEEecCCC---CCCCce-eeeeeccceEE
Confidence 3456777777665 56777762 233 79999999999999763221 122333 44788888898
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 76 v~~~~hp 82 (200)
T cd08462 76 VVWADNP 82 (200)
T ss_pred EEcCCCC
Confidence 8887755
No 318
>cd08452 PBP2_AlsR The C-terminal substrate binding domain of LysR-type trnascriptional regulator AlsR, which regulates acetoin formation under stationary phase growth conditions; contains the type 2 periplasmic binding fold. AlsR is responsible for activating the expression of the acetoin operon (alsSD) in response to inducing signals such as glucose and acetate. Like many other LysR family proteins, AlsR is transcribed divergently from the alsSD operon. The alsS gene encodes acetolactate synthase, an enzyme involved in the production of acetoin in cells of stationary-phase. AlsS catalyzes the conversion of two pyruvate molecules to acetolactate and carbon dioxide. Acetolactate is then converted to acetoin at low pH by acetolactate decarboxylase which encoded by the alsD gene. Acetoin is an important physiological metabolite excreted by many microorganisms grown on glucose or other fermentable carbon sources. This substrate-binding domain shows significant homology to the type 2 perip
Probab=41.79 E-value=82 Score=29.94 Aligned_cols=69 Identities=9% Similarity=0.092 Sum_probs=47.0
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.++. +.+++++ .++..++.+.|.+|++|+++... +.....+. +.++......+
T Consensus 14 ~l~~~l~~~~~~~P~v~i~i~-------------~~~~~~~~~~l~~~~~Dl~i~~~---~~~~~~~~-~~~l~~~~~~l 76 (197)
T cd08452 14 FLPPIVREYRKKFPSVKVELR-------------ELSSPDQVEELLKGRIDIGFLHP---PIQHTALH-IETVQSSPCVL 76 (197)
T ss_pred HHHHHHHHHHHHCCCcEEEEE-------------ecChHHHHHHHHCCCccEEEeeC---CCCCCCee-EEEeeeccEEE
Confidence 3467788887765 6677776 33567799999999999987522 22223333 45777888888
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 77 v~~~~hp 83 (197)
T cd08452 77 ALPKQHP 83 (197)
T ss_pred EEeCCCc
Confidence 8886643
No 319
>cd08425 PBP2_CynR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator CynR, contains the type 2 periplasmic binding fold. CynR is a LysR-like transcriptional regulator of the cyn operon, which encodes genes that allow cyanate to be used as a sole source of nitrogen. The operon includes three genes in the following order: cynT (cyanate permease), cynS (cyanase), and cynX (a protein of unknown function). CynR negatively regulates its own expression independently of cyanate. CynR binds to DNA and induces bending of DNA in the presence or absence of cyanate, but the amount of bending is decreased by cyanate. The CynR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding
Probab=41.78 E-value=71 Score=30.21 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=45.9
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.++. +.++++.. ....++.+.|.+|++|+++.... .....+ .+.++.....++
T Consensus 15 ~l~~~l~~~~~~~P~v~i~i~~-------------~~~~~~~~~l~~g~~Dl~i~~~~---~~~~~~-~~~~l~~~~~~~ 77 (197)
T cd08425 15 LIGPLIDRFHARYPGIALSLRE-------------MPQERIEAALADDRLDLGIAFAP---VRSPDI-DAQPLFDERLAL 77 (197)
T ss_pred hhHHHHHHHHHHCCCcEEEEEE-------------CcHHHHHHHHHcCCccEEEEecC---CCCCCc-EEEEeccccEEE
Confidence 3467778877665 46666653 24567889999999999975322 222223 246778888888
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 78 v~~~~~p 84 (197)
T cd08425 78 VVGATHP 84 (197)
T ss_pred EecCCCc
Confidence 8877644
No 320
>cd08438 PBP2_CidR The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of CidR which positively up-regulates the expression of cidABC operon in the presence of acetic acid produced by the metabolism of excess glucose. The CidR affects the control of murein hydrolase activity by enhancing cidABC expression in the presence of acetic acid. Thus, up-regulation of cidABC expression results in increased murein hydrolase activity. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate
Probab=41.70 E-value=73 Score=29.99 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=47.2
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++.. ++..+++..|.+|++|+++..... ....+. ..|+.....+
T Consensus 13 ~~l~~~l~~~~~~~p~v~i~i~~-------------~~~~~~~~~L~~~~~Dl~i~~~~~---~~~~~~-~~~l~~~~~~ 75 (197)
T cd08438 13 LLFAPLLAAFRQRYPNIELELVE-------------YGGKKVEQAVLNGELDVGITVLPV---DEEEFD-SQPLCNEPLV 75 (197)
T ss_pred hhcHHHHHHHHHHCcCeEEEEEE-------------cCcHHHHHHHHcCCCCEEEEeccc---ccCCce-eEEeccccEE
Confidence 34468888888775 56666652 245778999999999999753222 122232 3577788888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~v~~~~~~ 83 (197)
T cd08438 76 AVLPRGHP 83 (197)
T ss_pred EEecCCCC
Confidence 88887654
No 321
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=41.56 E-value=1.1e+02 Score=33.91 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=43.9
Q ss_pred EEEEEEEecCCChhHHHHHHHHHhh-c-CeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 38 LEPIVQHVENYDSLHTAKLMCNATS-E-GIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 38 l~~~~~D~~~~~~~~a~~~a~~li~-~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
-++.+.||=|.-...=..++.+|+. + .+..|||...|+.+..++.+|...++|..-.
T Consensus 336 ~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~I 394 (460)
T PLN02821 336 DHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWI 394 (460)
T ss_pred ccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEE
Confidence 4567778555445555667777864 4 8888899999999999999999999986543
No 322
>cd08486 PBP2_CbnR The C-terminal substrate binding domain of LysR-type transcriptional regulator, CbnR, involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of LysR-type regulator CbnR which is involved in the regulation of chlorocatechol breakdown. The chlorocatechol-degradative pathway is often found in bacteria that can use chlorinated aromatic compounds as carbon and energy sources. CbnR is found in the 3-chlorobenzoate degradative bacterium Ralstonia eutropha NH9 and forms a tetramer. CbnR activates the expression of the cbnABCD genes, which are responsible for the degradation of chlorocatechol converted from 3-chlorobenzoate and are transcribed divergently from cbnR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccha
Probab=41.32 E-value=78 Score=30.23 Aligned_cols=70 Identities=6% Similarity=0.043 Sum_probs=47.6
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++. ++...+++.|.+|++|+++..- +.....+. +.++......
T Consensus 14 ~~l~~~l~~f~~~~P~v~i~i~~-------------~~~~~l~~~l~~g~~D~~~~~~---~~~~~~~~-~~~l~~~~~~ 76 (198)
T cd08486 14 RSLPLLLRAFLTSTPTATVSLTH-------------MTKDEQVEGLLAGTIHVGFSRF---FPRHPGIE-IVNIAQEDLY 76 (198)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEE-------------CCHHHHHHHHHcCCceEEEecC---CCCCCceE-EEEEeeccEE
Confidence 34467888887765 66677663 3578899999999999997522 11222232 4577788888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 77 lv~~~~h~ 84 (198)
T cd08486 77 LAVHRSQS 84 (198)
T ss_pred EEecCCCc
Confidence 88886543
No 323
>cd08413 PBP2_CysB_like The C-terminal substrate domain of LysR-type transcriptional regulators CysB-like contains type 2 periplasmic binding fold. CysB is a transcriptional activator of genes involved in sulfate and thiosulfate transport, sulfate reduction, and cysteine synthesis. In Escherichia coli, the regulation of transcription in response to sulfur source is attributed to two transcriptional regulators, CysB and Cbl. CysB, in association with Cbl, downregulates the expression of ssuEADCB operon which is required for the utilization of sulfur from aliphatic sulfonates, in the presence of cysteine. Also, Cbl and CysB together directly function as transcriptional activators of tauABCD genes, which are required for utilization of taurine as sulfur source for growth. Like many other members of the LTTR family, CysB is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-bi
Probab=41.30 E-value=78 Score=30.15 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=47.8
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. .+....+.+.+.+|++|+++..... .....+. +.++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~v~~~-------------~~~~~~~~~~l~~g~~D~~i~~~~~--~~~~~~~-~~~l~~~~~~ 76 (198)
T cd08413 13 YVLPPVIAAFRKRYPKVKLSLH-------------QGTPSQIAEMVLKGEADIAIATEAL--DDHPDLV-TLPCYRWNHC 76 (198)
T ss_pred hhccHHHHHHHHhCCceEEEEE-------------eCCHHHHHHHHHcCCCCEEEEccCC--CCCCCcE-EEEeeeeeEE
Confidence 34467888887775 4566666 2356789999999999999753211 1122233 4678888889
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 77 ~v~~~~hp 84 (198)
T cd08413 77 VIVPPGHP 84 (198)
T ss_pred EEecCCCc
Confidence 88887654
No 324
>cd08456 PBP2_LysR The C-terminal substrate binding domain of LysR, transcriptional regulator for lysine biosynthesis, contains the type 2 periplasmic binding fold. LysR, the transcriptional activator of lysA encoding diaminopimelate decarboxylase, catalyses the decarboxylation of diaminopimelate to produce lysine. The LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational
Probab=41.22 E-value=71 Score=30.14 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=47.1
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++.. +....+++++.+|++|+++.... .....+. +.++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~~~i~~-------------~~~~~~~~~l~~g~~Dl~i~~~~---~~~~~~~-~~~l~~~~~~ 75 (196)
T cd08456 13 SFLPRAIKAFLQRHPDVTISIHT-------------RDSPTVEQWLSAQQCDLGLVSTL---HEPPGIE-RERLLRIDGV 75 (196)
T ss_pred hhHHHHHHHHHHHCCCcEEEEEe-------------CCHHHHHHHHHcCCccEEEEecC---CCCCCee-EEEeeccCeE
Confidence 45568888888876 66777763 34567889999999999975322 1122232 4577778888
Q ss_pred EEEEcCC
Q psy16206 518 ILYRKPA 524 (821)
Q Consensus 518 l~~~~~~ 524 (821)
+++++..
T Consensus 76 ~~~~~~~ 82 (196)
T cd08456 76 CVLPPGH 82 (196)
T ss_pred EEecCCC
Confidence 8887654
No 325
>PRK12680 transcriptional regulator CysB-like protein; Reviewed
Probab=41.13 E-value=90 Score=33.27 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=47.7
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.++. +.++++. .++.+.++.+|.+|++|+++..... ....... ..|++.....+
T Consensus 107 ~l~~~l~~f~~~~P~v~i~l~-------------~~~~~~~~~~l~~g~~Dl~i~~~~~--~~~~~~~-~~~l~~~~~~l 170 (327)
T PRK12680 107 VLPPAVAQIKQAYPQVSVHLQ-------------QAAESAALDLLGQGDADIAIVSTAG--GEPSAGI-AVPLYRWRRLV 170 (327)
T ss_pred hhHHHHHHHHHHCCCcEEEEE-------------eCChHHHHHHHHCCCCcEEEEecCC--CCCCcce-EEEeeccceEE
Confidence 4467888887766 5677776 3356889999999999999753211 1112222 46888888888
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++.+.+
T Consensus 171 ~~~~~hp 177 (327)
T PRK12680 171 VVPRGHA 177 (327)
T ss_pred EEeCCCh
Confidence 8887644
No 326
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=41.05 E-value=3.4e+02 Score=27.31 Aligned_cols=84 Identities=10% Similarity=0.087 Sum_probs=54.1
Q ss_pred HHHHHhhcCeEEEEcCCCc-chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChh----hHHHHHHHHHHh
Q psy16206 56 LMCNATSEGIAAIFGPQSI-ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESH----LISKGISVIIND 130 (821)
Q Consensus 56 ~a~~li~~~V~aiiGp~~s-~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~----~~~~al~~~~~~ 130 (821)
...+++..+.+.||....+ ..-..+...|...++|+|+....... ..|.-+|...-.. -+++.+-..+++
T Consensus 94 ~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~-----~dp~~i~i~di~~t~~~pla~~~R~~Lrk 168 (231)
T cd00755 94 NSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGK-----LDPTRIRVADISKTSGDPLARKVRKRLRK 168 (231)
T ss_pred HHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCC-----CCCCeEEEccEeccccCcHHHHHHHHHHH
Confidence 3455666678888877555 45566788899999999987433221 2344444443322 256666667777
Q ss_pred CCCC-EEEEEEecCC
Q psy16206 131 MDWD-TFTIIYETHD 144 (821)
Q Consensus 131 ~~w~-~v~ii~~~~~ 144 (821)
.+.+ .+-++|+...
T Consensus 169 ~~~~~~~~~v~S~E~ 183 (231)
T cd00755 169 RGIFFGVPVVYSTEP 183 (231)
T ss_pred cCCCCCeEEEeCCCC
Confidence 7775 6999998764
No 327
>cd08463 PBP2_DntR_like_4 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytra
Probab=40.92 E-value=90 Score=30.00 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=49.1
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++..- ++.+.+++.|.+|++|+++.... ...+.+. ..|+.....+
T Consensus 13 ~~~~~~l~~~~~~~P~~~v~~~~~------------~~~~~l~~~L~~g~lDl~i~~~~---~~~~~l~-~~~l~~~~~~ 76 (203)
T cd08463 13 LFLPELVARFRREAPGARLEIHPL------------GPDFDYERALASGELDLVIGNWP---EPPEHLH-LSPLFSDEIV 76 (203)
T ss_pred HHhHHHHHHHHHHCCCCEEEEEeC------------CcchhHHHHHhcCCeeEEEeccc---cCCCCcE-EeEeecCceE
Confidence 45678888888765 467777621 24578999999999999976321 1122233 3578888999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 77 lv~~~~h~ 84 (203)
T cd08463 77 CLMRADHP 84 (203)
T ss_pred EEEeCCCC
Confidence 99887754
No 328
>cd08417 PBP2_Nitroaromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrate
Probab=40.49 E-value=70 Score=30.30 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=48.3
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++ .++...+...|.+|++|+++.... .....+ -+.|+.....+
T Consensus 13 ~~~~~~i~~~~~~~P~i~l~~~-------------~~~~~~~~~~l~~g~~D~~i~~~~---~~~~~~-~~~~l~~~~~~ 75 (200)
T cd08417 13 LLLPPLLARLRQEAPGVRLRFV-------------PLDRDDLEEALESGEIDLAIGVFP---ELPPGL-RSQPLFEDRFV 75 (200)
T ss_pred HHHHHHHHHHHhhCCCeEEEec-------------cCCHHHHHHHHHcCCCCEEEeecc---cCCCcc-chhhhhcCceE
Confidence 44567778887765 5666665 335678999999999999976322 222333 24688888999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++.+.+
T Consensus 76 ~v~~~~~~ 83 (200)
T cd08417 76 CVARKDHP 83 (200)
T ss_pred EEecCCCc
Confidence 88887654
No 329
>cd08444 PBP2_Cbl The C-terminal substrate binding domain of LysR-type transcriptional regulator Cbl, which is required for expression of sulfate starvation-inducible (ssi) genes, contains the type 2 periplasmic binding fold. Cbl is a member of the LysR transcriptional regulators that comprise the largest family of prokaryotic transcription factor. Cbl shows high sequence similarity to CysB, the LysR-type transcriptional activator of genes involved in sulfate and thiosulfate transport, sulfate reduction, and cysteine synthesis. In Escherichia coli, the function of Cbl is required for expression of sulfate starvation-inducible (ssi) genes, coupled with the biosynthesis of cysteine from the organic sulfur sources (sulfonates). The ssi genes include the ssuEADCB and tauABCD operons encoding uptake systems for organosulfur compounds, aliphatic sulfonates, and taurine. The genes in these operons encode an ABC-type transport system required for uptake of aliphatic sulfonates and a desulfonati
Probab=40.39 E-value=76 Score=30.25 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=49.3
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
++-.+++..+.++. +.++++.. ++...+++.|.+|++|+++..... .....+ .+.|+.....+
T Consensus 13 ~~l~~~l~~~~~~~P~v~l~i~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~--~~~~~~-~~~~l~~~~~~ 76 (198)
T cd08444 13 YALPWVVQAFKEQFPNVHLVLHQ-------------GSPEEIASMLANGQADIGIATEAL--ENHPEL-VSFPYYDWHHH 76 (198)
T ss_pred hhhhHHHHHHHHHCCCeEEEEEe-------------CCHHHHHHHHHCCCccEEEecccc--CCCcCc-EEeecccccee
Confidence 55678888888875 67777763 356779999999999998753211 112233 35678888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 77 ~~~~~~hp 84 (198)
T cd08444 77 IIVPVGHP 84 (198)
T ss_pred EEecCCCc
Confidence 88887654
No 330
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=40.33 E-value=4.5e+02 Score=27.44 Aligned_cols=76 Identities=11% Similarity=-0.000 Sum_probs=52.4
Q ss_pred CeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEE--e---cC---hhhHHHHHHHHHHhCC---
Q psy16206 64 GIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNV--Y---PE---SHLISKGISVIINDMD--- 132 (821)
Q Consensus 64 ~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~--~---p~---~~~~~~al~~~~~~~~--- 132 (821)
-+.-++||....-...|+.++.+.++=++..+... +.....|+.|+ . |. .....+++.++.+.+|
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~----d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l~~ 85 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFD----DDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQW 85 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEeccccc----ccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCCeE
Confidence 37788999999999999999999998888765431 12334566662 2 22 2344556677666654
Q ss_pred -------CCEEEEEEecC
Q psy16206 133 -------WDTFTIIYETH 143 (821)
Q Consensus 133 -------w~~v~ii~~~~ 143 (821)
.+|++|+.+..
T Consensus 86 ~i~~~~~~~kiavl~Sg~ 103 (289)
T PRK13010 86 AIHPDGQRPKVVIMVSKF 103 (289)
T ss_pred EEecCCCCeEEEEEEeCC
Confidence 47888888765
No 331
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=40.20 E-value=2.1e+02 Score=30.01 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=60.4
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH---H
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR---N 78 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~---~ 78 (821)
+||++...+.......+++-.+..-+. |.++.-.... +..+.. .+.+.+..++++|++|...... .
T Consensus 161 ~Igv~Y~p~E~ns~~l~eelk~~A~~~------Gl~vve~~v~-~~ndi~----~a~~~l~g~~d~i~~p~dn~i~s~~~ 229 (322)
T COG2984 161 SIGVLYNPGEANSVSLVEELKKEARKA------GLEVVEAAVT-SVNDIP----RAVQALLGKVDVIYIPTDNLIVSAIE 229 (322)
T ss_pred eEEEEeCCCCcccHHHHHHHHHHHHHC------CCEEEEEecC-cccccH----HHHHHhcCCCcEEEEecchHHHHHHH
Confidence 578888776633333344433343333 3233222222 212332 3344445789999999988444 4
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
.+...++..++|+++...+.- . ..-+....-++..++.-.+.++.+
T Consensus 230 ~l~~~a~~~kiPli~sd~~~V----~--~Ga~aA~gvdy~~~G~qtg~~v~~ 275 (322)
T COG2984 230 SLLQVANKAKIPLIASDTSSV----K--EGALAALGVDYKDLGKQTGEMVVK 275 (322)
T ss_pred HHHHHHHHhCCCeecCCHHHH----h--cCcceeeccCHHHHHHHHHHHHHH
Confidence 445566889999997532211 1 122344555666656666555544
No 332
>cd08461 PBP2_DntR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytra
Probab=39.90 E-value=82 Score=29.78 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=47.6
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++.. ++...+...+.+|++|+++.... .....+ -+.++.....+
T Consensus 13 ~~l~~~l~~f~~~~P~v~i~i~~-------------~~~~~~~~~l~~~~~Di~i~~~~---~~~~~~-~~~~l~~~~~~ 75 (198)
T cd08461 13 AILPPLLAALRQEAPGVRVAIRD-------------LESDNLEAQLERGEVDLALTTPE---YAPDGL-RSRPLFEERYV 75 (198)
T ss_pred HHhHHHHHHHHHHCCCcEEEEee-------------CCcccHHHHHhcCCCcEEEecCc---cCCccc-eeeeeecCcEE
Confidence 44567888887775 67777762 23466899999999999975321 112223 25678888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 lv~~~~~p 83 (198)
T cd08461 76 CVTRRGHP 83 (198)
T ss_pred EEEcCCCh
Confidence 88887654
No 333
>cd08418 PBP2_TdcA The C-terminal substrate binding domain of LysR-type transcriptional regulator TdcA, which is involved in the degradation of L-serine and L-threonine, contains the type 2 periplasmic binding fold. TdcA, a member of the LysR family, activates the expression of the anaerobically-regulated tdcABCDEFG operon which is involved in the degradation of L-serine and L-threonine to acetate and propionate, respectively. The tdc operon is comprised of one regulatory gene tdcA and six structural genes, tdcB to tdcG. The expression of the tdc operon is affected by several transcription factors including the cAMP receptor protein (CRP), integration host factor (IHF), histone-like protein (HU), and the operon specific regulators TdcA and TcdR. TcdR is divergently transcribed from the operon and encodes a small protein that is required for efficient expression of the Escherichia coli tdc operon. This substrate-binding domain shows significant homology to the type 2 periplasmic binding
Probab=39.71 E-value=86 Score=29.64 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=47.5
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. ..+...+...|.+|++|+++...... .....+ -+.|+.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~i~-------------~~~~~~~~~~l~~g~~Dl~i~~~~~~-~~~~~~-~~~~l~~~~~~ 77 (201)
T cd08418 13 TLMPAVINRFKEQFPDVQISIY-------------EGQLSSLLPELRDGRLDFAIGTLPDE-MYLKEL-ISEPLFESDFV 77 (201)
T ss_pred hhhHHHHHHHHHHCCCceEEEE-------------eCcHHHHHHHHHcCCCcEEEEecCCC-CCCcce-eEEeecCCceE
Confidence 44567777777765 6677776 23567899999999999998632211 112233 24577788888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 78 ~v~~~~~~ 85 (201)
T cd08418 78 VVARKDHP 85 (201)
T ss_pred EEeCCCCc
Confidence 88877644
No 334
>cd08436 PBP2_LTTR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functi
Probab=39.51 E-value=1e+02 Score=28.76 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=47.5
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++.. ++..++.+.|.+|++|+++..... .....+. ..++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~v~i~i~~-------------~~~~~~~~~l~~~~~Dl~i~~~~~--~~~~~~~-~~~l~~~~~~ 76 (194)
T cd08436 13 VDLPELLARFHRRHPGVDIRLRQ-------------AGSDDLLAAVREGRLDLAFVGLPE--RRPPGLA-SRELAREPLV 76 (194)
T ss_pred HHHHHHHHHHHHHCCCcEEEEec-------------CCHHHHHHHHHcCCccEEEEecCC--CCCCCcE-EEEeecceEE
Confidence 44567778887765 56677662 245778999999999999763322 1223332 4577788888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 77 ~~~~~~~~ 84 (194)
T cd08436 77 AVVAPDHP 84 (194)
T ss_pred EEecCCCc
Confidence 88887654
No 335
>cd08414 PBP2_LTTR_aromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they ca
Probab=39.42 E-value=1.1e+02 Score=28.68 Aligned_cols=69 Identities=7% Similarity=0.097 Sum_probs=46.5
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.++. +.++++. .++...+...|.+|++|+++..... ....+. ..|+.....++
T Consensus 14 ~l~~~l~~~~~~~p~i~i~i~-------------~~~~~~~~~~l~~~~~Dl~i~~~~~---~~~~~~-~~~l~~~~~~~ 76 (197)
T cd08414 14 LLPRLLRRFRARYPDVELELR-------------EMTTAEQLEALRAGRLDVGFVRPPP---DPPGLA-SRPLLREPLVV 76 (197)
T ss_pred HHHHHHHHHHHHCCCcEEEEe-------------cCChHHHHHHHHcCCccEEEEcCCC---CCCCee-EEEEeeccEEE
Confidence 4467777777765 4566665 2345779999999999999753222 122232 46788888998
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 77 v~~~~~~ 83 (197)
T cd08414 77 ALPADHP 83 (197)
T ss_pred EecCCCc
Confidence 8887653
No 336
>PRK12684 transcriptional regulator CysB-like protein; Reviewed
Probab=39.26 E-value=99 Score=32.64 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=46.5
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.++. +.++++.. ++...++..|.+|++|+++..-.... ...+ -+.|+.....++
T Consensus 107 ~l~~~l~~~~~~~p~i~l~~~~-------------~~~~~~~~~L~~g~~D~~i~~~~~~~--~~~l-~~~~l~~~~~~~ 170 (313)
T PRK12684 107 ALPAAIKEFKKRYPKVRLSILQ-------------GSPTQIAEMVLHGQADLAIATEAIAD--YKEL-VSLPCYQWNHCV 170 (313)
T ss_pred HhHHHHHHHHHHCCCceEEEEe-------------CChHHHHHHHHCCCcCEEEeecCCCC--CCCc-eEEEeccceEEE
Confidence 3467777777654 67777762 35678999999999999975321110 1222 246778888888
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
++++..+
T Consensus 171 v~~~~~p 177 (313)
T PRK12684 171 VVPPDHP 177 (313)
T ss_pred EeCCCCc
Confidence 8887654
No 337
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=39.05 E-value=62 Score=27.65 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=47.1
Q ss_pred eeHHHHHHHHHHHcCCeEEE-EEecCCcccc-cC--CCCCcchHHHHHHHcCCcceEEeccccchhhhcce
Q psy16206 439 GYSVDLIKMIANELNFTYKF-VLERENTYGT-LN--PQTGKWNGLIGELQEQRADLAICDLTITSERRAAV 505 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~-~~~~~~~~g~-~~--~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~ 505 (821)
|....++..|.+++|.++.. ...++..|+. .. |+..++..+.+.++...+|++++ +-...+|.-.+
T Consensus 31 G~~~~~~~~ll~~lg~~~~~~n~~~d~~f~~~~~p~p~~~~l~~~~~~v~~~~ad~g~~-~DgDaDRl~~v 100 (104)
T PF02879_consen 31 GAGSDILPRLLERLGCDVIELNCDPDPDFPNQHAPNPEEESLQRLIKIVRESGADLGIA-FDGDADRLGVV 100 (104)
T ss_dssp STTHHHHHHHHHHTTCEEEEESSS-STTGTTTSTSSTSTTTTHHHHHHHHHSTTSEEEE-E-TTSSBEEEE
T ss_pred CHHHHHHHHHHHHcCCcEEEEecccccccccccccccccchhHHHHHHhhccCceEEEE-ECCcCceeEEE
Confidence 77899999999999997544 3346777876 43 33357889999999999999865 55555554433
No 338
>cd08426 PBP2_LTTR_like_5 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functi
Probab=38.87 E-value=92 Score=29.40 Aligned_cols=70 Identities=7% Similarity=0.031 Sum_probs=47.4
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++.. ++...+...+.+|++|+++..... ....+. +.++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~i~~-------------~~~~~~~~~l~~~~~D~~i~~~~~---~~~~~~-~~~l~~~~~~ 75 (199)
T cd08426 13 ELLPSLIARFRQRYPGVFFTVDV-------------ASTADVLEAVLSGEADIGLAFSPP---PEPGIR-VHSRQPAPIG 75 (199)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEe-------------CCcHHHHHHHHCCCccEEEecCCC---CCCCeE-EEeeccCcEE
Confidence 44567778887764 56677662 245779999999999999753222 122232 4678888889
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~v~~~~hp 83 (199)
T cd08426 76 AVVPPGHP 83 (199)
T ss_pred EEecCCCC
Confidence 88887654
No 339
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=38.36 E-value=2.2e+02 Score=28.93 Aligned_cols=87 Identities=9% Similarity=0.055 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC-CCChHHHHHHhhcCCCcEEE
Q psy16206 120 ISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD-TDDYRPLLKEIKNSSESHIL 198 (821)
Q Consensus 120 ~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~-~~d~~~~l~~lk~~~~~~iv 198 (821)
....+.+.....| .++.++....+-.+.+.+.+++. . +..+........ .++....++.|.++++|+++
T Consensus 93 l~~~ll~~~~~~~-~~v~llG~~~~v~~~a~~~l~~~--------y-~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~ 162 (243)
T PRK03692 93 LWEALMARAGKEG-TPVFLVGGKPEVLAQTEAKLRTQ--------W-NVNIVGSQDGYFTPEQRQALFERIHASGAKIVT 162 (243)
T ss_pred HHHHHHHHHHhcC-CeEEEECCCHHHHHHHHHHHHHH--------h-CCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 5566666666666 78888877765444444444332 2 455542221211 33456789999999999999
Q ss_pred EeCChhHHHHHHHHHHHc
Q psy16206 199 LDCSMDKTVTILKQAKEV 216 (821)
Q Consensus 199 l~~~~~~~~~~l~~a~~~ 216 (821)
+.+..+.-..++....+.
T Consensus 163 VglG~PkQE~~~~~~~~~ 180 (243)
T PRK03692 163 VAMGSPKQEIFMRDCRLV 180 (243)
T ss_pred EECCCcHHHHHHHHHHHh
Confidence 999887777777665443
No 340
>cd08442 PBP2_YofA_SoxR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold. YofA is a LysR-like transcriptional regulator of cell growth in Bacillus subtillis. YofA controls cell viability and the formation of constrictions during cell division. YofaA positively regulates expression of the cell division gene ftsW, and thus is essential for cell viability during stationary-phase growth of Bacillus substilis. YofA shows significant homology to SoxR from Arthrobacter sp. TE1826. SoxR is a negative regulator for the sarcosine oxidase gene soxA. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine, which is involved in the metabolism of creatine and choline. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides
Probab=38.10 E-value=82 Score=29.53 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=48.4
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++. ++..++.+.+.+|++|+++... +.....+ -..++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~i~~-------------~~~~~~~~~l~~g~~Dl~i~~~---~~~~~~~-~~~~l~~~~~~ 75 (193)
T cd08442 13 VRLPPLLAAYHARYPKVDLSLST-------------GTTGALIQAVLEGRLDGAFVAG---PVEHPRL-EQEPVFQEELV 75 (193)
T ss_pred hhhHHHHHHHHHHCCCceEEEEe-------------CCcHHHHHHHHCCCccEEEEeC---CCCCCCc-EEEEeecCcEE
Confidence 44568888887765 67788773 3567899999999999987532 2222222 24577788888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~v~~~~~~ 83 (193)
T cd08442 76 LVSPKGHP 83 (193)
T ss_pred EEecCCCc
Confidence 88887654
No 341
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=38.07 E-value=6.3e+02 Score=29.11 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=83.0
Q ss_pred EEEEEEEecCCChhHHHHHHHH-HhhcCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecC
Q psy16206 38 LEPIVQHVENYDSLHTAKLMCN-ATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPE 116 (821)
Q Consensus 38 l~~~~~D~~~~~~~~a~~~a~~-li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~ 116 (821)
.++.+.+ ..-..+++.+.+ +..+++++||.-.+++ .. +-+...+|+|....+ .++
T Consensus 40 ~~~~~~~---~~~~~~v~~~~~~~~~~~~dviIsrG~ta--~~---i~~~~~iPVv~i~~s--------~~D-------- 95 (538)
T PRK15424 40 ANITPIQ---LGFEKAVTYIRKRLATERCDAIIAAGSNG--AY---LKSRLSVPVILIKPS--------GFD-------- 95 (538)
T ss_pred ceEEehh---hhHHHHHHHHHHHHhhCCCcEEEECchHH--HH---HHhhCCCCEEEecCC--------HhH--------
Confidence 4444444 456678888865 4455999999655432 22 334577999876421 122
Q ss_pred hhhHHHHHHHHHHhCCCCEEEEEEecCC--chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCC
Q psy16206 117 SHLISKGISVIINDMDWDTFTIIYETHD--NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSE 194 (821)
Q Consensus 117 ~~~~~~al~~~~~~~~w~~v~ii~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~ 194 (821)
..+++.. ++.++ .++++|.-... +...+.+++ + ..+....+.. .+|.+..++++|+.+.
T Consensus 96 ---il~al~~-a~~~~-~~iavv~~~~~~~~~~~~~~~l---~----------~~i~~~~~~~-~~e~~~~v~~lk~~G~ 156 (538)
T PRK15424 96 ---VMQALAR-ARKLT-SSIGVVTYQETIPALVAFQKTF---N----------LRIEQRSYVT-EEDARGQINELKANGI 156 (538)
T ss_pred ---HHHHHHH-HHhcC-CcEEEEecCcccHHHHHHHHHh---C----------CceEEEEecC-HHHHHHHHHHHHHCCC
Confidence 3455533 45665 67777765543 444444443 2 3455555544 6889999999999999
Q ss_pred cEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 195 SHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 195 ~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
++||-.+ .....|.+.|+.+
T Consensus 157 ~~vvG~~------~~~~~A~~~g~~g 176 (538)
T PRK15424 157 EAVVGAG------LITDLAEEAGMTG 176 (538)
T ss_pred CEEEcCc------hHHHHHHHhCCce
Confidence 9998443 3456677888754
No 342
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=37.99 E-value=74 Score=34.35 Aligned_cols=74 Identities=5% Similarity=-0.003 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHHHHhhcCCCcEEEE
Q psy16206 122 KGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLLKEIKNSSESHILL 199 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l~~lk~~~~~~ivl 199 (821)
..+.+.++.++ +++.|+++........+++.+.+. ..|+.+.+..+.++ .++....++.+++.++|.||-
T Consensus 12 ~~l~~~~~~~~-~r~livt~~~~~~~~~~~v~~~L~-------~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 83 (351)
T cd08170 12 DELGEYLARLG-KRALIIADEFVLDLVGAKIEESLA-------AAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIG 83 (351)
T ss_pred HHHHHHHHHhC-CeEEEEECHHHHHHHHHHHHHHHH-------hCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEE
Confidence 44566777776 999999865433234444444443 33455544444333 455777888888889999998
Q ss_pred eCCh
Q psy16206 200 DCSM 203 (821)
Q Consensus 200 ~~~~ 203 (821)
.+.+
T Consensus 84 vGGG 87 (351)
T cd08170 84 IGGG 87 (351)
T ss_pred ecCc
Confidence 8765
No 343
>cd08411 PBP2_OxyR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily. OxyR senses hydrogen peroxide and is activated through the formation of an intramolecular disulfide bond. The OxyR activation induces the transcription of genes necessary for the bacterial defense against oxidative stress. The OxyR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repre
Probab=37.95 E-value=97 Score=29.31 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=46.6
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. .++...+++.|.+|++|+++.... .....+. ..++.....+
T Consensus 14 ~~l~~~l~~~~~~~P~i~i~i~-------------~~~~~~~~~~l~~~~~Dl~i~~~~---~~~~~~~-~~~l~~~~~~ 76 (200)
T cd08411 14 YLLPRLLPALRQAYPKLRLYLR-------------EDQTERLLEKLRSGELDAALLALP---VDEPGLE-EEPLFDEPFL 76 (200)
T ss_pred hhhHHHHHHHHHHCCCcEEEEE-------------eCcHHHHHHHHHcCCccEEEEecc---CCCCCce-EEEeeccceE
Confidence 34467788887765 5667666 235678899999999999975321 1122222 3577788888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 77 ~v~~~~~p 84 (200)
T cd08411 77 LAVPKDHP 84 (200)
T ss_pred EEecCCCC
Confidence 88887653
No 344
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=37.69 E-value=48 Score=30.79 Aligned_cols=81 Identities=11% Similarity=0.205 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEe
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLD 200 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~ 200 (821)
+..+..++++++-+++.|+-++-..-...+.+++.+. +.|..+.+... ++....+++-...+.+++++.
T Consensus 14 GQV~~~W~~~~~~~~IiVvdD~~A~D~~~k~~l~ma~-------P~gvk~~i~sv----~~a~~~l~~~~~~~~~v~ii~ 82 (151)
T PF03830_consen 14 GQVATAWVKKLNANRIIVVDDEVANDPFQKMILKMAA-------PAGVKLSIFSV----EEAIEKLKKPEYSKKRVLIIV 82 (151)
T ss_dssp TTHHHHHHHHHTTSEEEEE-HHHHHSHHHHHHHHHTS-------HTTSEEEEE-H----HHHHHHHCGGGGTTEEEEEEE
T ss_pred eeeeEEEhhhcccCEEEEECHHHhcCHHHHHHHHHhh-------cCCCceEEEEH----HHHHHHHHhcccCCceEEEEE
Confidence 4567889999999999888655555566677777776 66777776654 334555555555578889999
Q ss_pred CChhHHHHHHHH
Q psy16206 201 CSMDKTVTILKQ 212 (821)
Q Consensus 201 ~~~~~~~~~l~~ 212 (821)
-++.++..++++
T Consensus 83 k~~~d~~~l~~~ 94 (151)
T PF03830_consen 83 KSPEDALRLVEA 94 (151)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHhc
Confidence 999998888774
No 345
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=37.60 E-value=1.2e+02 Score=31.00 Aligned_cols=127 Identities=12% Similarity=0.125 Sum_probs=69.2
Q ss_pred HHHHHh-hcCeEEEEcCCCcchHHHHHHHhccCCCceeeec---cCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC
Q psy16206 56 LMCNAT-SEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAF---WDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM 131 (821)
Q Consensus 56 ~a~~li-~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~---~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~ 131 (821)
.+..|. +.|+.+|+=|..++.+.+...+-+..++|+|..- ..+.. . .....-+.=+..+....+...-+.+..+
T Consensus 52 ~~~~L~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iPii~iie~~v~~a~-~-~~~~~~IgvLAT~~Ti~s~~y~~~i~~~ 129 (251)
T TIGR00067 52 LLTFLKERHNIKLLVVACNTASALALEDLQRNFDFPVVGVIEPAIKAAI-R-LTANGRVLVIATNATIKSNAYHEALKEI 129 (251)
T ss_pred HHHHHHHhCCCCEEEEeCchHHHHHHHHHHHHCCCCEEeecHHHHHHHH-H-hCCCCeEEEEeCHHHHhhhHHHHHHHHh
Confidence 344455 4499999999998887888888888899999842 11111 0 1111112223333344566666677666
Q ss_pred CCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh
Q psy16206 132 DWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM 203 (821)
Q Consensus 132 ~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~ 203 (821)
+.+-. +.... ...+-...+... .. -......+...+..+++.+++.+|+.|..
T Consensus 130 ~~~~~--v~~~~--~~~lv~~Ie~g~------------~~---~~~~~~~l~~~l~~l~~~~~d~lILGCTh 182 (251)
T TIGR00067 130 ANDLL--VEMLA--CPELVPLAEAGL------------LG---EDYALECLKRYLRPLLDTLPDTVVLGCTH 182 (251)
T ss_pred CCCCE--EEecC--CHHHHHHHHcCC------------cC---CHHHHHHHHHHHHHHhcCCCCEEEECcCC
Confidence 65422 22211 122222222111 00 00012236667778877889999998874
No 346
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=37.58 E-value=85 Score=34.16 Aligned_cols=74 Identities=5% Similarity=0.002 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHHHHhhcCCCcEEEE
Q psy16206 122 KGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLLKEIKNSSESHILL 199 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l~~lk~~~~~~ivl 199 (821)
+.+.+.+..+| +++.||++........+++.+... ..|..+.+..++++ .++....++.+++.++|.||-
T Consensus 19 ~~l~~~l~~~g-~~~livtd~~~~~~~~~~v~~~l~-------~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIa 90 (366)
T PRK09423 19 ARLGEYLKPLG-KRALVIADEFVLGIVGDRVEASLK-------EAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIG 90 (366)
T ss_pred HHHHHHHHHcC-CEEEEEEChhHHHHHHHHHHHHHH-------hCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 45666778888 999999865433223333443443 33444433344332 445677778888889999998
Q ss_pred eCCh
Q psy16206 200 DCSM 203 (821)
Q Consensus 200 ~~~~ 203 (821)
.+.+
T Consensus 91 vGGG 94 (366)
T PRK09423 91 IGGG 94 (366)
T ss_pred ecCh
Confidence 7765
No 347
>cd08460 PBP2_DntR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytra
Probab=37.34 E-value=97 Score=29.45 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=46.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. .++. .+++.|.+|++|+++..... ....+. ..|+.....+
T Consensus 13 ~~l~~~l~~~~~~~P~v~v~l~-------------~~~~-~~~~~l~~g~~D~~i~~~~~---~~~~~~-~~~l~~~~~~ 74 (200)
T cd08460 13 AFGPALLAAVAAEAPGVRLRFV-------------PESD-KDVDALREGRIDLEIGVLGP---TGPEIR-VQTLFRDRFV 74 (200)
T ss_pred HHHHHHHHHHHHHCCCCEEEEe-------------cCch-hHHHHHHCCCccEEEecCCC---CCcchh-eeeeeccceE
Confidence 55667888887775 5666665 2234 68899999999999753221 122233 4688888889
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 75 ~v~~~~hp 82 (200)
T cd08460 75 GVVRAGHP 82 (200)
T ss_pred EEEeCCCC
Confidence 98887654
No 348
>KOG3857|consensus
Probab=37.16 E-value=1.5e+02 Score=31.14 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=64.1
Q ss_pred CCCCccEEEEecChhhHHHHHH----HHHHhCCCCEEEEEEecCC----chhHHHHHHHhcCCCCCcCCCCCCeEEEE--
Q psy16206 104 PTNGVHGVNVYPESHLISKGIS----VIINDMDWDTFTIIYETHD----NLVYLQQVLENAHDDDKEIRPGRPSVTIR-- 173 (821)
Q Consensus 104 ~~~~~~~~r~~p~~~~~~~al~----~~~~~~~w~~v~ii~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-- 173 (821)
....+|.|-+.|+....++.+. .-++..|.|++.++.|..- -....++.|++. |+.+.+.
T Consensus 37 ~k~~~~af~m~~s~~rfG~gv~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~----------~I~~~vyD~ 106 (465)
T KOG3857|consen 37 IKMMSVAFFMIPSTSRFGKGVLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEEN----------GINVEVYDK 106 (465)
T ss_pred cccceeeEEeccchhhhcchhHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHc----------CCceEEecC
Confidence 3456788889999888776443 3467799999999998774 244445555555 4666532
Q ss_pred -EcCCCCCChHHHHHHhhcCCCcEEEEeCCh
Q psy16206 174 -QLPPDTDDYRPLLKEIKNSSESHILLDCSM 203 (821)
Q Consensus 174 -~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~ 203 (821)
+..|...++...|+-.|+...|.+|..+.+
T Consensus 107 v~~ePtv~s~~~alefak~~~fDs~vaiGGG 137 (465)
T KOG3857|consen 107 VQPEPTVGSVTAALEFAKKKNFDSFVAIGGG 137 (465)
T ss_pred ccCCCchhhHHHHHHHHHhcccceEEEEcCc
Confidence 244547778899999999999998887765
No 349
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=36.65 E-value=42 Score=30.41 Aligned_cols=73 Identities=8% Similarity=0.002 Sum_probs=47.5
Q ss_pred HHHHHHhhc--CeEEEEcCCCc--chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 55 KLMCNATSE--GIAAIFGPQSI--ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 55 ~~a~~li~~--~V~aiiGp~~s--~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
+.+.+++.+ .+..++|.... .....+..+++..++|+++.......+ +..+|.++-..+.. ..+...+++..
T Consensus 2 ~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i--~~~hp~~~G~~g~~--~~~~~~~~l~~ 77 (137)
T PF00205_consen 2 DEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVI--PEDHPLFLGYLGLF--GSPAANEALEQ 77 (137)
T ss_dssp HHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSS--TTTSTTEEEESCGG--SCHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcccccc--CCCCchhcccCCcc--CCHHHHHHhcC
Confidence 345556654 89999998877 899999999999999998774332221 44567666633332 13455555554
Q ss_pred C
Q psy16206 131 M 131 (821)
Q Consensus 131 ~ 131 (821)
-
T Consensus 78 a 78 (137)
T PF00205_consen 78 A 78 (137)
T ss_dssp S
T ss_pred C
Confidence 3
No 350
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=36.57 E-value=5e+02 Score=26.80 Aligned_cols=84 Identities=10% Similarity=0.114 Sum_probs=53.6
Q ss_pred HHHHHhhcCeEEEEcCCCc-chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecCh----hhHHHHHHHHHHh
Q psy16206 56 LMCNATSEGIAAIFGPQSI-ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPES----HLISKGISVIIND 130 (821)
Q Consensus 56 ~a~~li~~~V~aiiGp~~s-~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~----~~~~~al~~~~~~ 130 (821)
...+++..+.+.||-...+ ..-.++...|...++|+|+....... -.|..+++.--. .-+++.+-..+++
T Consensus 113 ~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k-----~dp~~~~~~di~~t~~~pla~~~R~~lr~ 187 (268)
T PRK15116 113 NVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQ-----IDPTQIQVVDLAKTIQDPLAAKLRERLKS 187 (268)
T ss_pred hHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccC-----CCCCeEEEEeeecccCChHHHHHHHHHHH
Confidence 3445565578888877666 55667888999999999987433222 234444443322 2356666677776
Q ss_pred -CCCC-------EEEEEEecCC
Q psy16206 131 -MDWD-------TFTIIYETHD 144 (821)
Q Consensus 131 -~~w~-------~v~ii~~~~~ 144 (821)
+|.+ .+-++|+...
T Consensus 188 ~~~~~~~~~~~~~~~~v~S~E~ 209 (268)
T PRK15116 188 DFGVVKNSKGKLGVDCVFSTEA 209 (268)
T ss_pred hhCCCcccCccCCeEEEeCCCc
Confidence 6765 3788888663
No 351
>PRK11074 putative DNA-binding transcriptional regulator; Provisional
Probab=36.13 E-value=1.2e+02 Score=31.58 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEE
Q psy16206 441 SVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISIL 519 (821)
Q Consensus 441 ~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~ 519 (821)
-.+++..+.++. +.++.+. .++...++..|.+|++|++++... .......+ -+.++......++
T Consensus 107 l~~~l~~~~~~~p~i~i~i~-------------~~~~~~~~~~l~~g~~Dl~i~~~~-~~~~~~~l-~~~~l~~~~~~~v 171 (300)
T PRK11074 107 TRQLIVDFYRHFDDVELIIR-------------QEVFNGVWDALADGRVDIAIGATR-AIPVGGRF-AFRDMGMLSWACV 171 (300)
T ss_pred HHHHHHHHHHhCCCceEEEE-------------ehhhhHHHHHHHCCCCCEEEecCc-cCCccccc-ceeecccceEEEE
Confidence 356666666554 4566665 234577899999999999986321 11111222 2346777888888
Q ss_pred EEcCCC
Q psy16206 520 YRKPAK 525 (821)
Q Consensus 520 ~~~~~~ 525 (821)
++++.+
T Consensus 172 ~~~~hp 177 (300)
T PRK11074 172 VSSDHP 177 (300)
T ss_pred EcCCCc
Confidence 887654
No 352
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=36.09 E-value=5.5e+02 Score=29.12 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=67.9
Q ss_pred EEcCCCcchHHHHHHHhc-cCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc-
Q psy16206 68 IFGPQSIENRNIIESMCQ-MFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN- 145 (821)
Q Consensus 68 iiGp~~s~~~~~v~~i~~-~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~- 145 (821)
|++|.+.....++..+.+ ...+=+|.+ .+.+ ++|- ......+...+++....-+++.|+|..-.|
T Consensus 198 i~~p~~~~v~~~l~~~~~l~l~~~~i~p----------~HG~-i~r~--~~~~~l~~Y~~~~~~~~~~kv~IvY~S~~Gn 264 (479)
T PRK05452 198 ILTPFSRLVTPKITEILGFNLPVDMIAT----------SHGV-VWRD--NPTQIVELYLKWAADYQEDRITIFYDTMSNN 264 (479)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCCEEEC----------CCCc-eEeC--CHHHHHHHHHHHhhccCcCcEEEEEECCccH
Confidence 667776655555555543 223333433 2233 4552 222233333444444355899999987764
Q ss_pred hhHHHHHHHhcCCCCCcCCCC--CCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh------hHHHHHHHHHHHcc
Q psy16206 146 LVYLQQVLENAHDDDKEIRPG--RPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM------DKTVTILKQAKEVH 217 (821)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~--g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~------~~~~~~l~~a~~~g 217 (821)
-..+.+++.+.- +.. |..+....+. ..+...++..+. .++.|++.++. +....++.......
T Consensus 265 Te~mA~~ia~gl------~~~g~gv~v~~~~v~--~~~~~~i~~~~~--~ad~vilGspT~~~~~~p~~~~fl~~l~~~~ 334 (479)
T PRK05452 265 TRMMADAIAQGI------AEVDPRVAVKIFNVA--RSDKNEILTNVF--RSKGVLVGSSTMNNVMMPKIAGLLEEITGLR 334 (479)
T ss_pred HHHHHHHHHHHH------HhhCCCceEEEEECC--CCCHHHHHhHHh--hCCEEEEECCccCCcchHHHHHHHHHhhccC
Confidence 333333333221 022 4455544443 355666666554 56778877654 34566777766666
Q ss_pred ccCc
Q psy16206 218 LMGD 221 (821)
Q Consensus 218 ~~~~ 221 (821)
+.++
T Consensus 335 l~gK 338 (479)
T PRK05452 335 FRNK 338 (479)
T ss_pred cCCC
Confidence 5544
No 353
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=35.54 E-value=5.2e+02 Score=29.72 Aligned_cols=61 Identities=10% Similarity=-0.103 Sum_probs=45.0
Q ss_pred CceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCC-cchHHHHHHHhccCCCceeeeccC
Q psy16206 34 PDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQS-IENRNIIESMCQMFDIPHVEAFWD 97 (821)
Q Consensus 34 ~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~-s~~~~~v~~i~~~~~iP~is~~~~ 97 (821)
.|..++.++.|+--+++..+...+..+-.++|.++| .+.| ......+ .-..++|.+-++..
T Consensus 47 ~g~~ve~viad~~I~~~~eA~~~aekFk~e~Vd~~I~vt~cw~fG~Et~---d~~~~~PvllWg~~ 109 (588)
T PRK10991 47 CGEPVECVIADTCIGGVAEAAACEEKFSSENVGLTITVTPCWCYGSETI---DMDPTRPKAIWGFN 109 (588)
T ss_pred CCCeEEEEeCccccCCHHHHHHHHHHHhhcCCCEEEEecCcccchhHHH---hcCCCCCEEEeCCC
Confidence 355789999997778899888888888888999998 6665 4333333 33378999887543
No 354
>cd08439 PBP2_LrhA_like The C-terminal substrate domain of LysR-like regulator LrhA (LysR homologue A) and that of closely related homologs, contains the type 2 periplasmic binding fold. This CD represents the LrhA subfamily of LysR-like bacterial transcriptional regulators, including LrhA, HexA, PecT, and DgdR. LrhA is involved in control of the transcription of flagellar, motility, and chemotaxis genes by regulating the synthesis and concentration of FlhD(2)C(2), the master regulator for the expression of flagellar and chemotaxis genes. The LrhA protein has strong homology to HexA and PecT from plant pathogenic bacteria, in which HexA and PecT act as repressors of motility and of virulence factors, such as exoenzymes required for lytic reactions. DgdR also shares similar characteristics to those of LrhA, HexA and PecT. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a vari
Probab=34.81 E-value=1.2e+02 Score=28.42 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=45.0
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.++. ++++++.. +....+.++|.+|++|+++.... ...+ .+.++.....++
T Consensus 14 ~l~~~l~~~~~~~P~v~i~~~~-------------~~~~~~~~~l~~~~~Dl~i~~~~-----~~~~-~~~~l~~~~~~~ 74 (185)
T cd08439 14 ILPFLLNRFASVYPRLAIEVVC-------------KRTPRLMEMLERGEVDLALITHP-----PPGA-SATILRRSPTVW 74 (185)
T ss_pred HHHHHHHHHHHHCCCeEEEEEE-------------CChHHHHHHHHCCCCcEEEEecc-----CCCC-CceEEEEecCEE
Confidence 3457777776654 67777763 24567899999999999875321 1112 246777888888
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 75 v~~~~~~ 81 (185)
T cd08439 75 YCAAGYI 81 (185)
T ss_pred EECCCCc
Confidence 8877643
No 355
>PRK10837 putative DNA-binding transcriptional regulator; Provisional
Probab=34.79 E-value=1.3e+02 Score=31.10 Aligned_cols=69 Identities=9% Similarity=0.219 Sum_probs=46.2
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.++. +.++++.. +...+++..+.+|++|+++.... .....+ -..|+.....++
T Consensus 103 ~~~~~l~~~~~~~P~i~i~v~~-------------~~~~~~~~~l~~g~~Di~i~~~~---~~~~~~-~~~~l~~~~~~l 165 (290)
T PRK10837 103 ILPAMIARYRRDYPQLPLELSV-------------GNSQDVINAVLDFRVDIGLIEGP---CHSPEL-ISEPWLEDELVV 165 (290)
T ss_pred hhHHHHHHHHHHCCCceEEEEE-------------CCHHHHHHHHHhCCceEEEecCC---CCCCce-eEEEeecceEEE
Confidence 3457777777765 66777763 24577999999999999975322 112222 235777788888
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 166 v~~~~hp 172 (290)
T PRK10837 166 FAAPDSP 172 (290)
T ss_pred EEcCCCh
Confidence 8887654
No 356
>cd08441 PBP2_MetR The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold. MetR, a member of the LysR family, is a positive regulator for the metA, metE, metF, and metH genes. The sulfur-containing amino acid methionine is the universal initiator of protein synthesis in all known organisms and its derivative S-adenosylmethionine (SAM) and autoinducer-2 (AI-2) are involved in various cellular processes. SAM plays a central role as methyl donor in methylation reactions, which are essential for the biosynthesis of phospholipids, proteins, DNA and RNA. The interspecies signaling molecule AI-2 is involved in cell-cell communication process (quorum sensing) and gene regulation in bacteria. Although methionine biosynthetic enzymes and metabolic pathways are well conserved in bacteria, the regulation of methionine biosynthesis involves various regulatory mecha
Probab=34.70 E-value=1.1e+02 Score=28.95 Aligned_cols=68 Identities=9% Similarity=0.102 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEE
Q psy16206 441 SVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISIL 519 (821)
Q Consensus 441 ~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~ 519 (821)
-..++..+.++. +.++++.. ++...+...|.+|++|+++..-. .....+. ..+++.....++
T Consensus 15 ~~~~l~~~~~~~P~i~i~i~~-------------~~~~~~~~~l~~g~~Dl~i~~~~---~~~~~~~-~~~l~~~~~~~~ 77 (198)
T cd08441 15 LMPVLDQFRERWPDVELDLSS-------------GFHFDPLPALLRGELDLVITSDP---LPLPGIA-YEPLFDYEVVLV 77 (198)
T ss_pred hHHHHHHHHHhCCCeEEEEEe-------------CCchhHHHHHHcCCceEEEecCC---cCCCCcE-EEEccCCcEEEE
Confidence 457778877775 56777763 35677999999999999975221 1122232 457777888888
Q ss_pred EEcCCC
Q psy16206 520 YRKPAK 525 (821)
Q Consensus 520 ~~~~~~ 525 (821)
++.+.+
T Consensus 78 ~~~~~~ 83 (198)
T cd08441 78 VAPDHP 83 (198)
T ss_pred EcCCCC
Confidence 876643
No 357
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein. The model describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represent hydrophylioc periplasmic-binding protein in gram-negative organisms and its counterpart in gram-positive organisms is a lipoprotein. The other components of the system include the ModB, an integral membrane protein and ModC the ATP-binding subunit. Invariably almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.
Probab=34.46 E-value=1.1e+02 Score=30.02 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCC-cceEEeccccchhh---hcceeeccc--ceeec
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQR-ADLAICDLTITSER---RAAVDFTMP--FMTLG 515 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~R---~~~~~fS~p--~~~~~ 515 (821)
-++++.+.++.|++++++.- .-..++..+.+|. +|++++.-.....+ ...+....| +....
T Consensus 9 ~~~~~~f~~~~gi~V~~~~~-------------gs~~l~~~l~~~~~aDv~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 75 (216)
T TIGR01256 9 KEIAKQFEKRTGNKVVFSFG-------------SSGTLYTQIENGAPADLFISADNKWPKKLVDKGLVVAGSRFTYAGNK 75 (216)
T ss_pred HHHHHHHHHhhCCeEEEEeC-------------ChHHHHHHHHcCCCCcEEEECCHHHHHHHHHCCCCCCCchheEEccE
Confidence 46788888889988887732 3345777787764 99997743222222 122332233 66777
Q ss_pred eEEEEEcC
Q psy16206 516 ISILYRKP 523 (821)
Q Consensus 516 ~~l~~~~~ 523 (821)
.+++++++
T Consensus 76 ~~l~~~~~ 83 (216)
T TIGR01256 76 LVLISPKN 83 (216)
T ss_pred EEEEEECC
Confidence 78888765
No 358
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=34.38 E-value=4.5e+02 Score=26.66 Aligned_cols=126 Identities=10% Similarity=0.153 Sum_probs=76.8
Q ss_pred cCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEE--EEecCC-ch
Q psy16206 70 GPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTI--IYETHD-NL 146 (821)
Q Consensus 70 Gp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~i--i~~~~~-~~ 146 (821)
|..++ +...+..+.+..++|+...= -| .... |...+..-.+...-+..++..|-.-|++ +..+.. ..
T Consensus 34 GGlTP-S~g~i~~~~~~~~ipv~vMI-RP------R~gd--F~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~ 103 (248)
T PRK11572 34 GGLTP-SLGVLKSVRERVTIPVHPII-RP------RGGD--FCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDM 103 (248)
T ss_pred CCcCC-CHHHHHHHHHhcCCCeEEEE-ec------CCCC--CCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCH
Confidence 44433 33334555566678875441 11 1122 2223333334445555667788887774 444433 67
Q ss_pred hHHHHHHHhcCCCCCcCCCCCCeEEEEE-cCCCCCChHHHHHHhhcCCCcEEEEeCChhHH---HHHHHHHHH
Q psy16206 147 VYLQQVLENAHDDDKEIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNSSESHILLDCSMDKT---VTILKQAKE 215 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~---~~~l~~a~~ 215 (821)
...+.+++..+ +..+++.+ |+. ..|....++.+.+.+.+.|+-.+....+ ...++++.+
T Consensus 104 ~~~~~Li~~a~---------~~~vTFHRAfD~-~~d~~~al~~l~~lG~~rILTSGg~~~a~~g~~~L~~lv~ 166 (248)
T PRK11572 104 PRMRKIMAAAG---------PLAVTFHRAFDM-CANPLNALKQLADLGVARILTSGQQQDAEQGLSLIMELIA 166 (248)
T ss_pred HHHHHHHHHhc---------CCceEEechhhc-cCCHHHHHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHH
Confidence 88888888887 67788776 655 5688889999999999999977665443 445555444
No 359
>cd08449 PBP2_XapR The C-terminal substrate binding domain of LysR-type transcriptional regulator XapR involved in xanthosine catabolism, contains the type 2 periplasmic binding fold. In Escherichia coli, XapR is a positive regulator for the expression of xapA gene, encoding xanthosine phosphorylase, and xapB gene, encoding a polypeptide similar to the nucleotide transport protein NupG. As an operon, the expression of both xapA and xapB is fully dependent on the presence of both XapR and the inducer xanthosine. Expression of the xapR is constitutive but not auto-regulated, unlike many other LysR family proteins. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their
Probab=34.28 E-value=1.2e+02 Score=28.35 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=47.5
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-..++..+.++. +.+++++. +......+.|.+|++|+++...... .+...+. ..++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~i~~~~-------------~~~~~~~~~l~~~~~Dl~i~~~~~~-~~~~~~~-~~~l~~~~~~ 77 (197)
T cd08449 13 GGLGPALRRFKRQYPNVTVRFHE-------------LSPEAQKAALLSKRIDLGFVRFADT-LNDPPLA-SELLWREPMV 77 (197)
T ss_pred hhHHHHHHHHHHHCCCeEEEEEE-------------CCHHHHHHHHhCCCccEEEeccccc-CCCCCce-EEEEEEeeEE
Confidence 44567888887775 56666652 2467889999999999997532211 0122232 4578888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 78 ~v~~~~~~ 85 (197)
T cd08449 78 VALPEEHP 85 (197)
T ss_pred EEecCCCC
Confidence 88887643
No 360
>PRK12679 cbl transcriptional regulator Cbl; Reviewed
Probab=34.23 E-value=1.4e+02 Score=31.56 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=47.5
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. .++...++++|.+|++|+++..... .....+. +.|+.....+
T Consensus 106 ~~l~~~l~~f~~~~P~i~l~l~-------------~~~~~~~~~~L~~g~~Dl~i~~~~~--~~~~~l~-~~~l~~~~~~ 169 (316)
T PRK12679 106 YSLPEVIKAFRELFPEVRLELI-------------QGTPQEIATLLQNGEADIGIASERL--SNDPQLV-AFPWFRWHHS 169 (316)
T ss_pred cchHHHHHHHHHHCCCeEEEEe-------------cCCHHHHHHHHHcCCCCEEEecccC--CCCCCce-EEEccCCcEE
Confidence 44568888887764 4566665 2345689999999999998753221 1122233 4578888889
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 170 ~v~~~~hp 177 (316)
T PRK12679 170 LLVPHDHP 177 (316)
T ss_pred EEecCCCc
Confidence 98887754
No 361
>PRK12681 cysB transcriptional regulator CysB; Reviewed
Probab=33.66 E-value=1.5e+02 Score=31.59 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=45.5
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.++. ++++++. .++...++..|.+|++|+++.... ..+...+. +.|+.....++
T Consensus 107 ~l~~~l~~f~~~~P~i~i~i~-------------~~~~~~~~~~L~~g~iDl~i~~~~--~~~~~~l~-~~~l~~~~~~~ 170 (324)
T PRK12681 107 ALPPVIKGFIERYPRVSLHMH-------------QGSPTQIAEAAAKGNADFAIATEA--LHLYDDLI-MLPCYHWNRSV 170 (324)
T ss_pred hhHHHHHHHHHHCCCcEEEEE-------------eCCHHHHHHHHHcCCCCEEEecCc--ccCCCCeE-EEEeccceeEE
Confidence 3456777776664 5566665 346788999999999999975321 11122233 35777778888
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 171 v~~~~hp 177 (324)
T PRK12681 171 VVPPDHP 177 (324)
T ss_pred EeCCCCh
Confidence 8876643
No 362
>cd08416 PBP2_MdcR The C-terminal substrate-binding domian of LysR-type transcriptional regulator MdcR, which involved in the malonate catabolism contains the type 2 periplasmic binding fold. This family includes the C-terminal substrate binding domain of LysR-type transcriptional regulator (LTTR) MdcR that controls the expression of the malonate decarboxylase (mdc) genes. Like other members of the LTTRs, MdcR is a positive regulatory protein for its target promoter and composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins (PBP2). The PBP2 are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these dom
Probab=33.62 E-value=1.1e+02 Score=28.76 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=47.7
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++.. +....+...+.+|++|+++..... +.....+ -+.++......
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~i~~-------------~~~~~~~~~l~~~~~Dl~i~~~~~-~~~~~~l-~~~~l~~~~~~ 77 (199)
T cd08416 13 NTVPRIIMGLKLRRPELDIELTL-------------GSNKDLLKKLKDGELDAILVATPE-GLNDPDF-EVVPLFEDDIF 77 (199)
T ss_pred hhhHHHHHHHHHhCCCeEEEEEE-------------cCcHHHHHHHhCCCCCEEEEecCC-cCCCCCe-EEEEeecceEE
Confidence 44567888887776 67777763 245678899999999999763221 0112222 24577788888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 78 ~v~~~~hp 85 (199)
T cd08416 78 LAVPATSP 85 (199)
T ss_pred EEECCCCc
Confidence 88877644
No 363
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=33.52 E-value=2.7e+02 Score=26.14 Aligned_cols=81 Identities=4% Similarity=0.001 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEe
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLD 200 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~ 200 (821)
+..+..++++++-+++.++-+.-..-...+.+++.+. .+.|..+.+... .+..+.+++ +..+.+++++.
T Consensus 18 GQV~~~W~~~~~~~~IiVvdD~vA~D~~~k~~lkma~------~P~gvk~~i~sv----~~a~~~l~~-~~~~~~vlvl~ 86 (158)
T PRK09756 18 GQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITA------ETYGFGIRFFTI----EKTINVIGK-AAPHQKIFLIC 86 (158)
T ss_pred HHHHHhhhcccCCCEEEEEcchhcCCHHHHHHHHhcC------CCCCCEEEEEEH----HHHHHHHHh-ccCCceEEEEE
Confidence 5677889999999998888665554455555655432 145666665554 335555555 44566788889
Q ss_pred CChhHHHHHHHH
Q psy16206 201 CSMDKTVTILKQ 212 (821)
Q Consensus 201 ~~~~~~~~~l~~ 212 (821)
-++.++..++++
T Consensus 87 ~~~~da~~l~~~ 98 (158)
T PRK09756 87 RTPQTVRKLVEG 98 (158)
T ss_pred CCHHHHHHHHHc
Confidence 999998888763
No 364
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=33.49 E-value=5.2e+02 Score=26.16 Aligned_cols=107 Identities=15% Similarity=0.063 Sum_probs=57.9
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
+||.+.+... ....+|++-++++.|.... ..+..... ..+..+...+.+.+.+++..++.||+........
T Consensus 123 ~I~~i~~~~~~~~~~r~~gf~~~~~~~g~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~pdaI~~~nd~~A~- 196 (265)
T cd06354 123 KVGFIGGMDIPLIRRFEAGFEAGVKYVNPGVP----DIEVLVQY-AGSFNDPAKGKEIAQAMYDQGADVIFAAAGGTGN- 196 (265)
T ss_pred eEEEEecccChHHHHHHHHHHHHHHHHhccCC----CceEEEEE-cCcccCHHHHHHHHHHHHHCCCcEEEECCCCCch-
Confidence 5677754322 2223688888877662111 11122221 1121234566677888887778998887555444
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecCh
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPES 117 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~ 117 (821)
.+...+.+.++.++++...+.. ....|.+..+...-
T Consensus 197 gv~~al~~~gisIvGfD~~~~~---~~~~p~lttv~~~~ 232 (265)
T cd06354 197 GVFQAAKEAGVYAIGVDSDQYY---LAPGVVLTSMVKRV 232 (265)
T ss_pred HHHHHHHhcCCeEEEecCcccc---cCCCcEEEEEeehh
Confidence 4455566677888888655443 33344444444433
No 365
>PRK09508 leuO leucine transcriptional activator; Reviewed
Probab=33.27 E-value=1e+02 Score=32.57 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=49.5
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
++-.+++..+.++. ++++++. .++...+++.|.+|++|+++.... .....+. ..++.....+
T Consensus 125 ~~l~~~l~~f~~~~P~i~l~i~-------------~~~~~~~~~~l~~g~~Di~i~~~~---~~~~~l~-~~~l~~~~~~ 187 (314)
T PRK09508 125 RLTSQIYNRIEQIAPNIHVVFK-------------SSLNQNIEHQLRYQETEFVISYEE---FDRPEFT-SVPLFKDELV 187 (314)
T ss_pred HHHHHHHHHHHHhCCCcEEEEE-------------eCcchhHHHHHhcCCccEEEecCC---CCccccc-eeeeecCceE
Confidence 45578888888876 6778876 334577899999999999986432 1122333 3477888899
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 188 lv~~~~hp 195 (314)
T PRK09508 188 LVASKNHP 195 (314)
T ss_pred EEEcCCCC
Confidence 99887654
No 366
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=33.16 E-value=4.2e+02 Score=26.60 Aligned_cols=79 Identities=10% Similarity=-0.042 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHhhc--CeEEEEcCCCcchHHHHHHHhccCC------CceeeeccCCCCCCCCCCCccEEEEecChhh
Q psy16206 48 YDSLHTAKLMCNATSE--GIAAIFGPQSIENRNIIESMCQMFD------IPHVEAFWDPNKYFIPTNGVHGVNVYPESHL 119 (821)
Q Consensus 48 ~~~~~a~~~a~~li~~--~V~aiiGp~~s~~~~~v~~i~~~~~------iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~ 119 (821)
.+...+.+.+.+++.. .+.||+...+.....++.. +.+.+ +.++++..++.. ....+-+-.+..+...
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~-l~~~g~~~p~di~vig~d~~~~~---~~~~~~itti~~~~~~ 234 (268)
T cd01575 159 SSFALGRELLAELLARWPDLDAVFCSNDDLALGALFE-CQRRGISVPEDIAIAGFGDLEIA---AALPPALTTVRTPRRE 234 (268)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHH-HHHhCCCCCcceEEEecCCchhh---hccCCCceeeeCCHHH
Confidence 4556677788888865 6899998766554444433 33433 345665444322 1112333345555556
Q ss_pred HHHHHHHHHHh
Q psy16206 120 ISKGISVIIND 130 (821)
Q Consensus 120 ~~~al~~~~~~ 130 (821)
+++..++.+..
T Consensus 235 ~g~~a~~~l~~ 245 (268)
T cd01575 235 IGRRAAELLLA 245 (268)
T ss_pred HHHHHHHHHHH
Confidence 76666665543
No 367
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional
Probab=32.77 E-value=1.2e+02 Score=31.92 Aligned_cols=71 Identities=13% Similarity=0.239 Sum_probs=47.2
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.+.. +++++++. +....++.+|.+|++|+++...... ...+.+ -..|+.....++
T Consensus 111 ~l~~~l~~~~~~~p~v~i~~~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~~-~~~~~l-~~~~l~~~~~~l 175 (312)
T PRK10341 111 FMSDMINKFKEVFPKAQVSMYE-------------AQLSSFLPAIRDGRLDFAIGTLSNE-MKLQDL-HVEPLFESEFVL 175 (312)
T ss_pred hHHHHHHHHHHhCCCCEEEEEe-------------CCHHHHHHHHHcCCCcEEEecCCcc-cccCCe-eEEEEecccEEE
Confidence 3457777777653 56666663 3467899999999999998532211 111222 356888889999
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 176 v~~~~~p 182 (312)
T PRK10341 176 VASKSRT 182 (312)
T ss_pred EEcCCCc
Confidence 9887644
No 368
>cd08423 PBP2_LTTR_like_6 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functi
Probab=32.77 E-value=1.3e+02 Score=28.31 Aligned_cols=73 Identities=7% Similarity=0.053 Sum_probs=48.2
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccc--hhhhcceeecccceeec
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT--SERRAAVDFTMPFMTLG 515 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t--~~R~~~~~fS~p~~~~~ 515 (821)
.+-.+++..+.++. ++++++.. ++-..+...+.+|++|+++...... ....+.+ .+.++....
T Consensus 13 ~~l~~~l~~~~~~~P~i~i~~~~-------------~~~~~~~~~l~~~~~Dl~i~~~~~~~~~~~~~~~-~~~~l~~~~ 78 (200)
T cd08423 13 ALLPPALAALRARHPGLEVRLRE-------------AEPPESLDALRAGELDLAVVFDYPVTPPPDDPGL-TRVPLLDDP 78 (200)
T ss_pred HhhhHHHHHHHHhCCCCeEEEEe-------------CCHHHHHHHHhcCCccEEEEeccccccCCCCCCc-EEEEeccCc
Confidence 34567888887775 67777763 2346789999999999997532110 1122233 356788888
Q ss_pred eEEEEEcCCC
Q psy16206 516 ISILYRKPAK 525 (821)
Q Consensus 516 ~~l~~~~~~~ 525 (821)
.++++++..+
T Consensus 79 ~~~~~~~~~p 88 (200)
T cd08423 79 LDLVLPADHP 88 (200)
T ss_pred EEEEecCCCC
Confidence 9988887654
No 369
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=32.70 E-value=1e+02 Score=33.72 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCCEEEEEEecCC----chhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCCC
Q psy16206 122 KGISVIINDMDWDTFTIIYETHD----NLVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSSE 194 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~~ 194 (821)
..+.+.++.+|.+++.|+++..- ....+.+.+++. |+.+... ...++ .++....++.+++.++
T Consensus 20 ~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~----------~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~ 89 (383)
T PRK09860 20 TDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEER----------NIFSVIYDGTQPNPTTENVAAGLKLLKENNC 89 (383)
T ss_pred HHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHc----------CCeEEEeCCCCCCcCHHHHHHHHHHHHHcCC
Confidence 55677888899999999987532 234455555544 3444322 34333 5567788888999999
Q ss_pred cEEEEeCCh
Q psy16206 195 SHILLDCSM 203 (821)
Q Consensus 195 ~~ivl~~~~ 203 (821)
|.||-.+.+
T Consensus 90 D~IiaiGGG 98 (383)
T PRK09860 90 DSVISLGGG 98 (383)
T ss_pred CEEEEeCCc
Confidence 999977665
No 370
>cd08469 PBP2_PnbR The C-terminal substrate binding domain of LysR-type transcriptional regulator PnbR, which is involved in regulating the pnb genes encoding enzymes for 4-nitrobenzoate catabolism, contains the type 2 periplasmic binding fold. PnbR is the regulator of one or both of the two pnb genes that encoding enzymes for 4-nitrobenzoate catabolism. In Pseudomonas putida strain, pnbA encodes a 4-nitrobenzoate reductase, which is responsible for catalyzing the direct reduction of 4-nitrobenzoate to 4-hydroxylaminobenzoate, and pnbB encodes a 4-hydroxylaminobenzoate lyase, which catalyzes the conversion of 4-hydroxylaminobenzoate to 3, 4-dihydroxybenzoic acid and ammonium. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft bet
Probab=32.18 E-value=1.4e+02 Score=28.99 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=47.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++.. .+...+...|.+|++|+++.... ...+.+. +.|+.....+
T Consensus 13 ~~l~~~l~~f~~~~P~v~l~i~~-------------~~~~~~~~~l~~g~~Di~i~~~~---~~~~~l~-~~~l~~~~~~ 75 (221)
T cd08469 13 VLLPALVRRLETEAPGIDLRIRP-------------VTRLDLAEQLDLGRIDLVIGIFE---QIPPRFR-RRTLFDEDEV 75 (221)
T ss_pred HHHHHHHHHHHHHCCCcEEEEee-------------CChhhHHHHHHCCCccEEEecCC---CCCccce-eeeeeccceE
Confidence 34567777776654 46676662 25667999999999999976322 2223343 4688888999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 76 ~v~~~~~p 83 (221)
T cd08469 76 WVMRKDHP 83 (221)
T ss_pred EEEeCCCc
Confidence 99887654
No 371
>cd08464 PBP2_DntR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytra
Probab=32.01 E-value=1.2e+02 Score=28.61 Aligned_cols=69 Identities=17% Similarity=0.044 Sum_probs=46.6
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
++-..++..+.++. +.+++++. ++...+...|.+|++|+++..... . ...+ -+.++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~v~l~i~~-------------~~~~~~~~~l~~g~~D~~i~~~~~--~-~~~~-~~~~l~~~~~~ 75 (200)
T cd08464 13 WLAPPLLAALRAEAPGVRLVFRQ-------------VDPFNVGDMLDRGEIDLAIGVFGE--L-PAWL-KREVLYTEGYA 75 (200)
T ss_pred HHHHHHHHHHHHHCCCcEEEEec-------------CCcccHHHHHhcCcccEEEecCCC--C-cccc-eeeeecccceE
Confidence 45567788887775 67777762 245678899999999999753221 1 2223 24578888888
Q ss_pred EEEEcCC
Q psy16206 518 ILYRKPA 524 (821)
Q Consensus 518 l~~~~~~ 524 (821)
++++...
T Consensus 76 ~v~~~~~ 82 (200)
T cd08464 76 CLFDPQQ 82 (200)
T ss_pred EEEeCCC
Confidence 8887654
No 372
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=31.78 E-value=4.7e+02 Score=28.27 Aligned_cols=190 Identities=13% Similarity=0.092 Sum_probs=105.7
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCC--cceEEeccccchhh------------------
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQR--ADLAICDLTITSER------------------ 501 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~--~Di~~~~~~~t~~R------------------ 501 (821)
-++++.+.++.|+++.+..+. +++.+...++.|. +|++..+-..-...
T Consensus 45 ~~~~~~F~k~tGi~V~~~~~~------------sne~~~ak~~~g~~~~Dvv~~s~~~~~~~~~~gll~~lD~skl~n~~ 112 (363)
T COG0687 45 PALLKPFEKETGIKVVYDTFD------------SNEEMLAKLKAGGGGYDVVVPSGYFVARLIKEGLLQPLDKSKLPNWK 112 (363)
T ss_pred HHHHHHHHHHHCCEEEEEecC------------CcHHHHHHHHcCCCCceEEEeCHHHHHHHHHcCCcccCChhhCcCcc
Confidence 459999999999999998764 4467777777665 68875432211110
Q ss_pred ------------hcceeecccceeeceEEEEEcCCCC----CCCcccccccCchhHHHHHHHHHHH--HHHHHHhhhhcC
Q psy16206 502 ------------RAAVDFTMPFMTLGISILYRKPAKK----QPDLFSFLEPLSFDVWVYMATAYLG--VSLLLFFLARIS 563 (821)
Q Consensus 502 ------------~~~~~fS~p~~~~~~~l~~~~~~~~----~~~~~~~l~~~~~~vw~~~~~~~~~--~~~~~~~~~~~~ 563 (821)
...-.|+.||+-...+|.++.+.-. ..++..+.+|-...--......+.. .......+..+
T Consensus 113 ~l~~~~~~~~~~d~g~~y~vPy~~g~t~i~Yn~~~~~~~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~l- 191 (363)
T COG0687 113 NLDPEFLNPPKFDPGNKYSVPYFWGTTGIAYNTDKVKDAPPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALL- 191 (363)
T ss_pred ccCHHHhccccCCCCCEeeeeEEeeeeEEEEeccccCCCCCCccHHHHhCchhhHHHhCCceEEecChHHHHHHHHHHc-
Confidence 0112366889988899998876432 2455555554420000000000000 00000000100
Q ss_pred CCcceeEeecCCChHHHHHHHHhhhccCC-cccccCchhHHHHHHhccCceEEEecccchhhhh--hhcCCceeecceec
Q psy16206 564 SGSRLRYSAKNSNVSLYQRMHSAMESSRP-SVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEV--EKNCDLMQVGGLLD 640 (821)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~--~~~~~~~~~~~~~~ 640 (821)
++.......+.+.+..+.+..-++ .+...+..+..+.+.+ |++++.++-+-.+.... .....+..+.+..+
T Consensus 192 -----g~~~n~~~~~~~~~a~~~L~~~kp~~~~~~~~~~~~~~l~~-Gev~~a~~w~g~~~~~~~~~~~~~i~~~~p~eG 265 (363)
T COG0687 192 -----GKSPNTTDPEDLKKAFDLLDKLKPVNVYWFDGSQYVQLLAN-GEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEG 265 (363)
T ss_pred -----CCCCCCCCHHHHHHHHHHHHHhCcccEEEecchHHHHHHhc-CCEEEEEEeChHHHHHHHhhcCCceEEEcCCCC
Confidence 111124566778888888888788 6777888889999998 99888877444444332 22334555544321
Q ss_pred C--CCcccccCC
Q psy16206 641 S--KGYGIAMPT 650 (821)
Q Consensus 641 ~--~~~~~a~~k 650 (821)
. -.-.++++|
T Consensus 266 ~~~w~D~~~ipk 277 (363)
T COG0687 266 SILWFDNLAIPK 277 (363)
T ss_pred ceeeeEeeeeeC
Confidence 1 233577777
No 373
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.62 E-value=56 Score=28.77 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=25.0
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEec
Q psy16206 192 SSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 192 ~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
..+|.+++...+.....+++++.++|. ...|+.++
T Consensus 54 ~~iDlavv~~~~~~~~~~v~~~~~~g~---~~v~~~~g 88 (116)
T PF13380_consen 54 EPIDLAVVCVPPDKVPEIVDEAAALGV---KAVWLQPG 88 (116)
T ss_dssp ST-SEEEE-S-HHHHHHHHHHHHHHT----SEEEE-TT
T ss_pred CCCCEEEEEcCHHHHHHHHHHHHHcCC---CEEEEEcc
Confidence 578999999999999999999998884 45777655
No 374
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=31.60 E-value=1.8e+02 Score=28.89 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=65.0
Q ss_pred cEEEEecCh--hhHHHHHHHHHHh-CCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChH
Q psy16206 109 HGVNVYPES--HLISKGISVIIND-MDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYR 183 (821)
Q Consensus 109 ~~~r~~p~~--~~~~~al~~~~~~-~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~ 183 (821)
++.|..... ...+....+.++. +.-+.+.||--+..-...--++++.+. ++...-.|+. -+.+.
T Consensus 88 fisRpY~d~~dK~~~~~~f~klK~iW~~rdilIVEG~~sR~GvgnDLFdnak-----------sI~rIicPsknAf~~~d 156 (225)
T PF08759_consen 88 FISRPYIDYKDKSKSARYFEKLKQIWKDRDILIVEGEKSRSGVGNDLFDNAK-----------SIKRIICPSKNAFSKYD 156 (225)
T ss_pred eeeeeeeecccchHHHHHHHHHHHHhCCCcEEEEecCCeecCCCchhhhCcc-----------ceEEEECCchhhHHHHH
Confidence 344444433 4556666666766 666888877655443333345555554 3443444443 44577
Q ss_pred HHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 184 PLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 184 ~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.++++++...+.+|+.+-++.|..+.-.+.++|..
T Consensus 157 ~I~~~i~~~~~~~LiLiaLGPTAtVLayDL~~~G~q 192 (225)
T PF08759_consen 157 EILEAIKKYAKDKLILIALGPTATVLAYDLSKLGYQ 192 (225)
T ss_pred HHHHHHHHhCCCcEEEEecCCcchhhHHHHHhcCCe
Confidence 888888888888888888899988888888887753
No 375
>cd08447 PBP2_LTTR_aromatics_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type regulator similar to CbnR which is involved in the regulation of chlorocatechol breakdown. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Ve
Probab=31.28 E-value=1.3e+02 Score=28.29 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=46.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. .++.......+.+|++|+++... +.....+ .+.++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~v~~~-------------~~~~~~~~~~l~~g~~D~~i~~~---~~~~~~~-~~~~l~~~~~~ 75 (198)
T cd08447 13 SFLPRLLAAARAALPDVDLVLR-------------EMVTTDQIEALESGRIDLGLLRP---PFARPGL-ETRPLVREPLV 75 (198)
T ss_pred HHHHHHHHHHHHHCCCeEEEEE-------------eCCHHHHHHHHHcCCceEEEecC---CCCCCCe-eEEEeecCceE
Confidence 44568888887775 5677776 33567899999999999997532 1122222 23577788888
Q ss_pred EEEEcCC
Q psy16206 518 ILYRKPA 524 (821)
Q Consensus 518 l~~~~~~ 524 (821)
++++++.
T Consensus 76 ~v~~~~~ 82 (198)
T cd08447 76 AAVPAGH 82 (198)
T ss_pred EEecCCC
Confidence 8877654
No 376
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=30.55 E-value=1.2e+02 Score=32.58 Aligned_cols=74 Identities=9% Similarity=-0.007 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHHHHhhcCCCcEEEE
Q psy16206 122 KGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLLKEIKNSSESHILL 199 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l~~lk~~~~~~ivl 199 (821)
..+.+.++.+| +++.|+++........+++.+... ..|+.+....+..+ .+.....++.+++.++|.||-
T Consensus 12 ~~l~~~~~~~g-~~~liv~~~~~~~~~~~~v~~~l~-------~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 83 (349)
T cd08550 12 KEIAAILSTFG-SKVAVVGGKTVLKKSRPRFEAALA-------KSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIG 83 (349)
T ss_pred HHHHHHHHHcC-CeEEEEEChHHHHHHHHHHHHHHH-------hcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 45667788888 898888865442233344444443 23444433344332 334666777788889999987
Q ss_pred eCCh
Q psy16206 200 DCSM 203 (821)
Q Consensus 200 ~~~~ 203 (821)
.+.+
T Consensus 84 vGGG 87 (349)
T cd08550 84 VGGG 87 (349)
T ss_pred ecCc
Confidence 7765
No 377
>cd08431 PBP2_HupR The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, p
Probab=30.49 E-value=1e+02 Score=29.05 Aligned_cols=71 Identities=17% Similarity=0.024 Sum_probs=47.5
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++.. ++.+.++.+|.+|++|+++..... .....+ .+.++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~v~i~i~~-------------~~~~~~~~~l~~g~~D~~i~~~~~--~~~~~~-~~~~l~~~~~~ 76 (195)
T cd08431 13 QPLYPLIAEFYQLNKATRIRLSE-------------EVLGGTWDALASGRADLVIGATGE--LPPGGV-KTRPLGEVEFV 76 (195)
T ss_pred HHHHHHHHHHHHHCCCCceEEEE-------------eccchHHHHHhCCCCCEEEEecCC--CCCCce-EEEecccceEE
Confidence 45578888888876 67777763 245678999999999999753211 111223 25577777888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 77 ~v~~~~hp 84 (195)
T cd08431 77 FAVAPNHP 84 (195)
T ss_pred EEEcCCCh
Confidence 88876643
No 378
>cd08485 PBP2_ClcR The C-terminal substrate binding domain of LysR-type transcriptional regulator ClcR involved in the chlorocatechol catabolism, contains type 2 periplasmic binding fold. In soil bacterium Pseudomonas putida, the ortho-pathways of catechol and 3-chlorocatechol are central catabolic pathways that convert aromatic and chloroaromaric compounds to tricarboxylic acid (TCA) cycle intermediates. The 3-chlorocatechol-degradative pathway is encoded by clcABD operon, which requires the divergently transcribed clcR and an intermediate of the pathway, 2-chloromuconate, as an inducer for activation. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding th
Probab=30.23 E-value=1.3e+02 Score=28.48 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=44.6
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++. ++-++++++|.+|++|+++..... . ...+. +.++.....+
T Consensus 14 ~~l~~~l~~~~~~~P~i~l~~~~-------------~~~~~~~~~l~~~~~D~~i~~~~~--~-~~~l~-~~~l~~~~~~ 76 (198)
T cd08485 14 HTLPLLLRQLLSVAPSATVSLTQ-------------MSKNRQIEALDAGTIDIGFGRFYP--Y-QEGVV-VRNVTNERLF 76 (198)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEE-------------CCHHHHHHHHHcCCccEEEecCCC--C-CCCeE-EEEeeccceE
Confidence 34467777776654 66677663 245678999999999998753211 1 22233 4577777777
Q ss_pred EEEEcCC
Q psy16206 518 ILYRKPA 524 (821)
Q Consensus 518 l~~~~~~ 524 (821)
++++++.
T Consensus 77 ~~~~~~~ 83 (198)
T cd08485 77 LGAQKSR 83 (198)
T ss_pred EEeCCCC
Confidence 7776554
No 379
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=30.14 E-value=4.4e+02 Score=27.90 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=51.0
Q ss_pred eeHHHHHHHHHH-HcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhh------------hcce
Q psy16206 439 GYSVDLIKMIAN-ELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSER------------RAAV 505 (821)
Q Consensus 439 G~~~dll~~ia~-~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R------------~~~~ 505 (821)
=+...|.+.+.+ ..|++.+.+.. .++ -.-++.+.+||+|+++.-...-.+- .+.+
T Consensus 41 ~ig~~ia~~~~~~~~~i~~~v~~t-----------ggS-v~Nl~~i~~Ge~d~alvq~d~a~~ay~G~g~f~~~~~~~~l 108 (321)
T COG2358 41 PIGGGLAQLLNKDEKGIECSVVPT-----------GGS-VENLKLLASGEADLALVQSDVAYEAYNGTGSFEGKGKDENL 108 (321)
T ss_pred ehHHHHHHHHhccCCCeEEEEeec-----------cch-HHHHHhHhcCccchhhhhHHHHHHHHhCcccccccccccch
Confidence 445677777777 67766666642 233 3446689999999986421111110 0123
Q ss_pred eecccceeeceEEEEEcCCCCCCCcccccccCc
Q psy16206 506 DFTMPFMTLGISILYRKPAKKQPDLFSFLEPLS 538 (821)
Q Consensus 506 ~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 538 (821)
..-.+++.....+++|++.. . ..++.++..+
T Consensus 109 r~v~~lype~~~vv~r~d~~-I-kti~DL~GKr 139 (321)
T COG2358 109 RAVAALYPEPFHVVTRKDAG-I-KTIADLKGKR 139 (321)
T ss_pred hhheecccceEEEEEecCCC-c-ceehhcCCCE
Confidence 33456778888888888876 3 3344555444
No 380
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=30.02 E-value=1.1e+02 Score=31.39 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhh
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSER 501 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R 501 (821)
.+.+.+.++.+=++++..++.+..| .-.++++.++.|.+|+......+...+
T Consensus 17 ~f~~~v~e~t~G~v~v~~~~~g~Lg-------~~~e~~~~v~~G~~d~~~~~~~~~~~~ 68 (257)
T TIGR00787 17 KFAKLVNEKTNGEIKISVFPSSQLG-------SDRAMLEALQGGALDMTAPSSSKFGPL 68 (257)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCCC-------ChHHHHHHHhCCCccEEeccccccccc
Confidence 6778889999889999888865433 457899999999999987655444443
No 381
>PRK10918 phosphate ABC transporter periplasmic substrate-binding protein PstS; Provisional
Probab=29.54 E-value=2e+02 Score=30.98 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcce-eecccceeeceEEEE
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAV-DFTMPFMTLGISILY 520 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~-~fS~p~~~~~~~l~~ 520 (821)
-.+.+.+.+..+.++++.. .|+-.+ +.++.+|.+|++.++-.++++..+.. .+..|.....+++++
T Consensus 42 ~~~a~~y~~~~~v~v~~~~------------~GSG~G-i~~~~~g~vd~a~ssr~l~~~E~~~~~~~~~pva~daIaivv 108 (346)
T PRK10918 42 AKWADTYQKETGNKVNYQG------------IGSSGG-VKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAV 108 (346)
T ss_pred HHHHHHHHhhcCCEEEEec------------CccHHH-HHHHHhCCCcEEecCccCCHHHHhhcCCeeeeEEEEEEEEEE
Confidence 3445555555566666652 345444 68899999999998888886543322 245688899999999
Q ss_pred EcCC
Q psy16206 521 RKPA 524 (821)
Q Consensus 521 ~~~~ 524 (821)
..+.
T Consensus 109 N~~~ 112 (346)
T PRK10918 109 NIPG 112 (346)
T ss_pred eCCC
Confidence 8653
No 382
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=29.50 E-value=6e+02 Score=25.57 Aligned_cols=124 Identities=11% Similarity=0.073 Sum_probs=69.4
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
+||.+..... ..-..|++-++++.+.. .+....... ...+...+.+.+.+++..+..||+.+.......
T Consensus 122 ~I~~i~~~~~~~~~~R~~Gf~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~A~g 193 (260)
T cd06304 122 KVGFVGGMPIPEVNRFINGFAAGAKSVNPD-------ITVLVIYTG-SFFDPAKGKEAALALIDQGADVIFAAAGGTGPG 193 (260)
T ss_pred ceEEEeccccHHHHHHHHHHHHHHHHhCCC-------cEEEEEEec-CccCcHHHHHHHHHHHhCCCCEEEEcCCCCchH
Confidence 4666644222 22345677777653321 122222222 223455667778888877678888766554444
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEE
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFT 137 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ 137 (821)
+...+.+.++-++++..++.. ....|-+-.+..+....+...+..+..-.|+..-
T Consensus 194 -v~~al~~~gv~vigfD~~~~~---~~~~p~lttv~~~~~~~~~~~~~~~~~~~~~~~~ 248 (260)
T cd06304 194 -VIQAAKEAGVYAIGVDSDQSA---LAPDAVLTSAVKNVDVAVYDAIKAVLDGTWKGGV 248 (260)
T ss_pred -HHHHHHHcCCEEEeecCchhh---hcCccEEEEEEeccHHHHHHHHHHHHcCCCCCcc
Confidence 444555566777777554443 2334656666666666777777766666664443
No 383
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=29.49 E-value=6.6e+02 Score=26.09 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=53.1
Q ss_pred CeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecC-------hhhHHHHHHH-HHHhCC---
Q psy16206 64 GIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPE-------SHLISKGISV-IINDMD--- 132 (821)
Q Consensus 64 ~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~-------~~~~~~al~~-~~~~~~--- 132 (821)
++.-++||....-...|+.++...++=++..+.+-. .....|+.|+.-. ....-+++.+ +.+.++
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~----~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~i 76 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD----PETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMTW 76 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc----CCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCEE
Confidence 467899999999999999999998888776644322 1223455553322 1233345555 555543
Q ss_pred -------CCEEEEEEecCCchhHHHHHHHh
Q psy16206 133 -------WDTFTIIYETHDNLVYLQQVLEN 155 (821)
Q Consensus 133 -------w~~v~ii~~~~~~~~~~~~~~~~ 155 (821)
-+|++|+.+.. ...++.++..
T Consensus 77 ~l~~~~~~~ki~vl~Sg~--g~nl~~l~~~ 104 (280)
T TIGR00655 77 ELILADKLKRVAILVSKE--DHCLGDLLWR 104 (280)
T ss_pred EEecCCCCcEEEEEEcCC--ChhHHHHHHH
Confidence 37888888765 3344444443
No 384
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=29.41 E-value=41 Score=33.08 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=24.6
Q ss_pred CeEEEEcCCCcchHHHHHHHhccCCCceeeec
Q psy16206 64 GIAAIFGPQSIENRNIIESMCQMFDIPHVEAF 95 (821)
Q Consensus 64 ~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~ 95 (821)
+|.+|+||+|+.-+.....++..++.|+|+..
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~D 33 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLD 33 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEec
Confidence 47899999999888877889999999999863
No 385
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=29.39 E-value=3.3e+02 Score=27.03 Aligned_cols=115 Identities=14% Similarity=0.083 Sum_probs=61.1
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcC--eEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEG--IAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~--V~aiiGp~~s~ 75 (821)
+|+.+..... .....+++-+++..+ . . ++.. +...+ .+.....+.+.+++..+ +.+++.+....
T Consensus 120 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~-~-~------~~~~-~~~~~-~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 189 (264)
T cd01537 120 RIALLAGPLGSSTARERVAGFKDALKEAG-P-I------EIVL-VQEGD-WDAEKGYQAAEELLTAHPDPTAIFAANDDM 189 (264)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHHHHcC-C-c------Chhh-hccCC-CCHHHHHHHHHHHHhcCCCCCEEEEcCcHH
Confidence 5666655433 445677777776643 1 1 1111 11112 34555666777888774 89999887654
Q ss_pred hHHHHHHHhccCC------CceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 76 NRNIIESMCQMFD------IPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 76 ~~~~v~~i~~~~~------iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
... +...+.+.+ +++++...++.. ....+-+..+..+...++..+++.+..
T Consensus 190 a~~-~~~~~~~~g~~i~~~i~i~~~d~~~~~---~~~~~~~~ti~~~~~~~g~~~~~~~~~ 246 (264)
T cd01537 190 ALG-ALRALREAGLRVPDDISVIGFDGTPEA---LLAGPPLTTVRQPPDELGRAAVELLLE 246 (264)
T ss_pred HHH-HHHHHHHhCCCCCCCeEEEeecCccHH---HhhCCcceeEeCCHHHHHHHHHHHHHH
Confidence 333 334454443 466666443332 122344455555656666666665543
No 386
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=29.01 E-value=1.2e+02 Score=33.28 Aligned_cols=72 Identities=7% Similarity=-0.013 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCCEEEEEEecCC----chhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCCC
Q psy16206 122 KGISVIINDMDWDTFTIIYETHD----NLVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSSE 194 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~~ 194 (821)
+.+.+.++.+|.+++.|+.+..- ....+.+.+++. |+.+... .+.++ .++..+.++.+++.++
T Consensus 38 ~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~----------gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~ 107 (395)
T PRK15454 38 SSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVK----------GIAMTLWPCPVGEPCITDVCAAVAQLRESGC 107 (395)
T ss_pred HHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHc----------CCeEEEECCCCCCcCHHHHHHHHHHHHhcCc
Confidence 55677788899898888876432 234455555544 4545433 23333 4457788888999999
Q ss_pred cEEEEeCCh
Q psy16206 195 SHILLDCSM 203 (821)
Q Consensus 195 ~~ivl~~~~ 203 (821)
|.||-.+.+
T Consensus 108 D~IiavGGG 116 (395)
T PRK15454 108 DGVIAFGGG 116 (395)
T ss_pred CEEEEeCCh
Confidence 999988776
No 387
>cd08458 PBP2_NocR The C-terminal substrate-domain of LysR-type transcriptional regulator, NocR, involved in the catabolism of nopaline, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulator NocR, which is involved in the catabolism of nopaline. Opines are low molecular weight compounds found in plant crown gall tumors produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, an
Probab=28.94 E-value=1.7e+02 Score=27.62 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=45.6
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.++. +.++++. .++-.++.+.+.+|++|+++..... ....+ -+.++.....++
T Consensus 14 ~l~~~l~~f~~~~P~v~i~~~-------------~~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~~-~~~~l~~~~~~~ 76 (196)
T cd08458 14 FMSGVIQTFIADRPDVSVYLD-------------TVPSQTVLELVSLQHYDLGISILAG---DYPGL-TTEPVPSFRAVC 76 (196)
T ss_pred hhHHHHHHHHHHCCCcEEEEe-------------ccChHHHHHHHHcCCCCEEEEeccC---CCCCc-eEEEeccCceEE
Confidence 3467888887765 5666665 2345668899999999998753221 11222 245778888888
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++.+.+
T Consensus 77 v~~~~hp 83 (196)
T cd08458 77 LLPPGHR 83 (196)
T ss_pred EecCCCc
Confidence 8876543
No 388
>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional
Probab=28.83 E-value=1.5e+02 Score=30.72 Aligned_cols=69 Identities=7% Similarity=0.048 Sum_probs=47.9
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+..+++..+.++. +.++.+.. .+..+++..|.+|++|+++..... ..+.+. +.|++....++
T Consensus 104 ~l~~~~~~~~~~~p~v~i~~~~-------------~~~~~~~~~l~~~~~D~~i~~~~~---~~~~l~-~~~l~~~~~~~ 166 (296)
T PRK09906 104 LLPKVLPMFRLRHPDTLIELVS-------------LITTQQEEKLRRGELDVGFMRHPV---YSDEID-YLELLDEPLVV 166 (296)
T ss_pred HHHHHHHHHHHHCCCeEEEEEe-------------CCcHHHHHHHHcCCeeEEEecCCC---CCCCce-EEEEecccEEE
Confidence 3457777777765 55566552 246789999999999999863332 233344 46899999999
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
++++..+
T Consensus 167 v~~~~~p 173 (296)
T PRK09906 167 VLPVDHP 173 (296)
T ss_pred EecCCCc
Confidence 9887654
No 389
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=28.83 E-value=1.5e+02 Score=29.96 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=31.6
Q ss_pred CCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 165 PGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 165 ~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
..|..+.......+.......++.+.+.+++.|++.........+++.+.+.|.+
T Consensus 27 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ip 81 (266)
T cd06282 27 AAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDAERVP 81 (266)
T ss_pred HCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhhCCCC
Confidence 4456665543332233445667777777888888754332223466777776653
No 390
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=28.79 E-value=1.3e+02 Score=32.82 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCC----chhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCC
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHD----NLVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSS 193 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~ 193 (821)
...+.+.++.+|.+++.|+++..- ..+.+.+.+++.+ ..+... .+.++ .++....++.+++.+
T Consensus 18 l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g----------~~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 87 (382)
T PRK10624 18 IGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAG----------LAYEIYDGVKPNPTIEVVKEGVEVFKASG 87 (382)
T ss_pred HHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCC----------CeEEEeCCCCCCcCHHHHHHHHHHHHhcC
Confidence 355777888899999999987643 2344555555443 444332 24332 445677788888899
Q ss_pred CcEEEEeCCh
Q psy16206 194 ESHILLDCSM 203 (821)
Q Consensus 194 ~~~ivl~~~~ 203 (821)
+|.||-.+.+
T Consensus 88 ~D~IIaiGGG 97 (382)
T PRK10624 88 ADYLIAIGGG 97 (382)
T ss_pred CCEEEEeCCh
Confidence 9999977665
No 391
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=28.62 E-value=2.6e+02 Score=26.29 Aligned_cols=81 Identities=12% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeC
Q psy16206 122 KGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDC 201 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~ 201 (821)
..+.+.+.+.|.+ -+....+......-++++.+- ...+...-+-.++.||.+++.++++.+.+++++..
T Consensus 69 ~~l~~~l~~~Gf~--pv~~kG~~Dv~laIDame~~~---------~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 69 DKLIEAVVNQGFE--PIIVAGDVDVRMAVEAMELIY---------NPNIDAVALVTRDADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred HHHHHHHHHCCce--EEEecCcccHHHHHHHHHHhc---------cCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeC
Q ss_pred ChhHHHHHHHHH
Q psy16206 202 SMDKTVTILKQA 213 (821)
Q Consensus 202 ~~~~~~~~l~~a 213 (821)
.......+.+++
T Consensus 138 ~~~ts~~L~~ac 149 (160)
T TIGR00288 138 EPGFSTALQNSA 149 (160)
T ss_pred CCCChHHHHHhc
No 392
>cd08443 PBP2_CysB The C-terminal substrate domain of LysR-type transcriptional regulator CysB contains type 2 periplasmic binding fold. CysB is a transcriptional activator of genes involved in sulfate and thiosulfate transport, sulfate reduction, and cysteine synthesis. In Escherichia coli, the regulation of transcription in response to sulfur source is attributed to two transcriptional regulators, CysB and Cbl. CysB, in association with Cbl, downregulates the expression of ssuEADCB operon which is required for the utilization of sulfur from aliphatic sulfonates, in the presence of cysteine. Also, Cbl and CysB together directly function as transcriptional activators of tauABCD genes, which are required for utilization of taurine as sulfur source for growth. Like many other members of the LTTR family, CysB is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding speci
Probab=28.33 E-value=1.4e+02 Score=28.27 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=47.4
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++. .++...+.+.+.+|++|+++.... ......+. +.++.....+
T Consensus 13 ~~l~~~l~~f~~~~P~~~i~i~-------------~~~~~~~~~~l~~g~~Dl~i~~~~--~~~~~~~~-~~~l~~~~~~ 76 (198)
T cd08443 13 YVLPPVIKGFIERYPRVSLQMH-------------QGSPTQIAEMVSKGLVDFAIATEA--LHDYDDLI-TLPCYHWNRC 76 (198)
T ss_pred eECcHHHHHHHHHCCCeEEEEE-------------eCCHHHHHHHHHCCCccEEEEecc--ccccCCce-EeeeeeceEE
Confidence 44568888887764 5666666 234567899999999999975211 11122333 4678888888
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 77 ~v~~~~hp 84 (198)
T cd08443 77 VVVKRDHP 84 (198)
T ss_pred EEEcCCCc
Confidence 88877654
No 393
>COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]
Probab=28.17 E-value=2e+02 Score=28.35 Aligned_cols=60 Identities=13% Similarity=0.013 Sum_probs=37.4
Q ss_pred ccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeecceecCCCcccccCC----chhhcccccceeE
Q psy16206 596 VKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGGLLDSKGYGIAMPT----SKFLAKFSFGFAK 663 (821)
Q Consensus 596 ~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k----~~l~~~in~al~~ 663 (821)
..+....-.+|.+ |++|+-++-... .++.. +. .-++..+.|-|+++| .+..+.+-++|..
T Consensus 136 ~~th~avA~aVa~-G~AD~GvGlr~~----A~~~g-L~--Fipl~~E~YD~virke~~~~~~vr~fi~~L~s 199 (223)
T COG1910 136 ATTHDAVASAVAS-GRADAGVGLRHA----AEKYG-LD--FIPLGDEEYDFVIRKERLDKPVVRAFIKALKS 199 (223)
T ss_pred ccccHHHHHHHHc-CCCCccccHHHH----HHHcC-Cc--eEEcccceEEEEEehhHccCHHHHHHHHHhcc
Confidence 4455566667777 999998874333 33321 11 124567788899998 4566666666654
No 394
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=28.15 E-value=1.5e+02 Score=30.11 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=43.4
Q ss_pred EEEEEEecC--CchhHHHH-HHHhcCCCCCcCCC-CCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChh-HHHHH
Q psy16206 135 TFTIIYETH--DNLVYLQQ-VLENAHDDDKEIRP-GRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMD-KTVTI 209 (821)
Q Consensus 135 ~v~ii~~~~--~~~~~~~~-~~~~~~~~~~~~~~-~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~-~~~~~ 209 (821)
+|+++.++. .+...+.. +.+.+. . .|..+.+.....+.......++++.+.+++.+++..... ....+
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 73 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAK-------VLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPI 73 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHH-------HcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHH
Confidence 467777653 23333333 333333 3 355555433222233455677777788999988765443 34567
Q ss_pred HHHHHHcccc
Q psy16206 210 LKQAKEVHLM 219 (821)
Q Consensus 210 l~~a~~~g~~ 219 (821)
++++.+.+++
T Consensus 74 ~~~l~~~~iP 83 (272)
T cd06301 74 VKAANAAGIP 83 (272)
T ss_pred HHHHHHCCCe
Confidence 7777777753
No 395
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=27.95 E-value=1.6e+02 Score=29.18 Aligned_cols=58 Identities=7% Similarity=0.030 Sum_probs=40.4
Q ss_pred HHHHHhCCCCEEEEEEecCC-chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHh
Q psy16206 125 SVIINDMDWDTFTIIYETHD-NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEI 189 (821)
Q Consensus 125 ~~~~~~~~w~~v~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~l 189 (821)
+.+++++.-++|.+.+|+|. |..+..++.+... ..|..+.+...|....|+.+.+++-
T Consensus 146 ~~lLkr~~~~~Iil~~D~D~AG~~Aa~r~~~~L~-------~~G~~v~vv~lP~~~KDwNEllk~~ 204 (218)
T TIGR00646 146 MKFFKQKKIEKIFICFDNDFAGKNAAANLEEILK-------KAGFITKVIEIKAAAKDWNDLFLLN 204 (218)
T ss_pred HHHHhccCCCEEEEEeCCCHHHHHHHHHHHHHHH-------HCCCeEEEEeCCCcCCChhHHHHHh
Confidence 34555555689999999886 6666666666554 4467777777777678999888643
No 396
>cd08457 PBP2_OccR The C-terminal substrate-domain of LysR-type transcriptional regulator, OccR, involved in the catabolism of octopine, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulator OccR, which is involved in the catabolism of octopine. Opines are low molecular weight compounds found in plant crown gall tumors produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. In Agrobacterium tumefaciens, OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine, an arginine derivative. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. This substrate-binding domain shows significant h
Probab=27.90 E-value=1.8e+02 Score=27.37 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=45.4
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.+++++.. .-.++...|.+|++|+++.... .....+. ..++.....+
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~~~~~-------------~~~~~~~~l~~~~~Dl~i~~~~---~~~~~~~-~~~l~~~~~~ 75 (196)
T cd08457 13 GFLPRFLAAFLRLRPNLHLSLMGL-------------SSSQVLEAVASGRADLGIADGP---LEERQGF-LIETRSLPAV 75 (196)
T ss_pred cccHHHHHHHHHHCCCeEEEEEec-------------CcHHHHHHHHcCCccEEEeccC---CCCCCcE-EEEeccCCeE
Confidence 34568888888775 566666632 3467888999999999975322 2222232 3567777888
Q ss_pred EEEEcCC
Q psy16206 518 ILYRKPA 524 (821)
Q Consensus 518 l~~~~~~ 524 (821)
++++++.
T Consensus 76 ~~~~~~~ 82 (196)
T cd08457 76 VAVPMGH 82 (196)
T ss_pred EEeeCCC
Confidence 8877654
No 397
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=27.63 E-value=2.5e+02 Score=26.40 Aligned_cols=90 Identities=10% Similarity=-0.080 Sum_probs=43.7
Q ss_pred CceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcC--CCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEE
Q psy16206 34 PDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGP--QSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGV 111 (821)
Q Consensus 34 ~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp--~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~ 111 (821)
.|..++.++.|+.-+.+..|+..+.++..+||.+.|.- .=+.... ........-.|++.++.+
T Consensus 46 ~G~~Ve~Viad~~Iggv~eAa~~ae~f~~~~V~~titvtpcWcy~~e-tmd~~~~~p~aiwgfngt-------------- 110 (171)
T PF07881_consen 46 DGSPVECVIADTTIGGVAEAAACAEKFKREGVGVTITVTPCWCYGSE-TMDMDPNTPKAIWGFNGT-------------- 110 (171)
T ss_dssp TS-B--EEE-SS-B-SHHHHHHHHHHHHCCTEEEEEEEESS---HHH-HS---TTS-EEEEE---S--------------
T ss_pred CCCeeEEEECCCcccCHHHHHHHHHHHHHcCCCEEEEEEeeeecchh-hhccCcCCCccEEeecCC--------------
Confidence 46689999999777889999999999999988887753 2222222 122233333344444322
Q ss_pred EEecChhhHHHHHHHHHHhCCCCEEEEEE
Q psy16206 112 NVYPESHLISKGISVIINDMDWDTFTIIY 140 (821)
Q Consensus 112 r~~p~~~~~~~al~~~~~~~~w~~v~ii~ 140 (821)
-.|....+ .+....+.+.|...+.|-.
T Consensus 111 -erPGaVyL-aAa~aa~~Q~Gip~f~IyG 137 (171)
T PF07881_consen 111 -ERPGAVYL-AAALAAHNQKGIPAFRIYG 137 (171)
T ss_dssp -SS-HHHHH-HHHHHHHHHCT---EEEE-
T ss_pred -CCCcHHHH-HHHHHHHhcCCCcceeecc
Confidence 12232222 3344446778988888877
No 398
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]
Probab=27.34 E-value=60 Score=33.23 Aligned_cols=99 Identities=29% Similarity=0.352 Sum_probs=58.9
Q ss_pred CCccceecchHHHHHhhcCceE--EEEEccCCcccccCCCCCcchhhHHHHhhccceeeeehhhhhhhhhhccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTY--KFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILFFIYSILFFIYTFVNEAVST 758 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (821)
++..||..|+.+.+++.++... +++ .-.|.+++..+..+..+.+..-. ..+| .
T Consensus 56 ~~~~G~dvdl~~~ia~~l~~~~~~~~~-------------~~~~~~~~~~l~~g~~D~~~~~~--------~~t~----e 110 (275)
T COG0834 56 GKLVGFDVDLAKAIAKRLGGDKKVEFV-------------PVAWDGLIPALKAGKVDIIIAGM--------TITP----E 110 (275)
T ss_pred CeEEeeeHHHHHHHHHHhCCcceeEEe-------------ccchhhhhHHHhcCCcCEEEecc--------ccCH----H
Confidence 5788999999999999988753 222 23588899999888766443110 0111 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCc
Q psy16206 759 RLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGS 814 (821)
Q Consensus 759 r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~ 814 (821)
|.-...+ ..-|.-.=..+++.......|++++||.. .++|+..+++
T Consensus 111 r~~~~~f-------s~py~~~~~~~~~~~~~~~~~~~~~DL~g---k~v~v~~gt~ 156 (275)
T COG0834 111 RKKKVDF-------SDPYYYSGQVLLVKKDSDIGIKSLEDLKG---KKVGVQLGTT 156 (275)
T ss_pred Hhccccc-------cccccccCeEEEEECCCCcCcCCHHHhCC---CEEEEEcCcc
Confidence 1110000 11122222223333333344899999984 8999999988
No 399
>PRK11062 nhaR transcriptional activator NhaR; Provisional
Probab=27.30 E-value=1.5e+02 Score=30.89 Aligned_cols=73 Identities=14% Similarity=0.281 Sum_probs=45.4
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
++-.+++..+.++. ++++++. .++...+...|.+|++|+++............+ ...|+.....+
T Consensus 106 ~~l~~~l~~f~~~~P~i~l~~~-------------~~~~~~~~~~l~~g~~D~~i~~~~~~~~~~~~l-~~~~l~~~~~~ 171 (296)
T PRK11062 106 RLVSRVLLTAVPEDESIHLRCF-------------ESTHEMLLEQLSQHKLDMILSDCPVDSTQQEGL-FSKKLGECGVS 171 (296)
T ss_pred hhHHHHHHHHHhcCCceEEEEE-------------eCCHHHHHHHHHcCCCCEEEecCCCccccccch-hhhhhhccCcc
Confidence 45567777776543 4555554 225678999999999999975322111112223 34577778887
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++.+.+
T Consensus 172 ~~~~~~~~ 179 (296)
T PRK11062 172 FFCTNPLP 179 (296)
T ss_pred eEecCCCc
Confidence 77776543
No 400
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=27.19 E-value=2.4e+02 Score=28.63 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=64.5
Q ss_pred cEEEEecC--hhhHHHHHHHHHHh-CCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChH
Q psy16206 109 HGVNVYPE--SHLISKGISVIIND-MDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYR 183 (821)
Q Consensus 109 ~~~r~~p~--~~~~~~al~~~~~~-~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~ 183 (821)
++.|...+ +...+....+.++. +.-+.+.||--+..-...--++++.+. ++...-.|+. -..+.
T Consensus 106 fiSRpY~d~~dKs~s~~~F~~lK~iW~~rdIliVEG~~sR~GvGndLF~nak-----------sI~rIicPsknAy~~yd 174 (265)
T TIGR03728 106 FVSRPYIDFEDKSKSGSYFEKLKQIWKNKDILIVEGETSRSGVGNDLFDNAK-----------SIKRIICPSKNAFSKYD 174 (265)
T ss_pred eecccccccccchhhHHHHHHHHHHhCCCcEEEEecccccccCchhhhhCcc-----------cEEEEeCCChhHHHHHH
Confidence 34444433 33445566666665 666888887655543333345555554 3444444543 34577
Q ss_pred HHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 184 PLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 184 ~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.++.+++...+.+|+.+-++.|..+.-.+.++|..
T Consensus 175 ~I~e~i~~~~k~~LiLlaLGPTAkVLayDL~~~GyQ 210 (265)
T TIGR03728 175 EILEAIRENAKNKLILLMLGPTAKVLAYDLSDLGYQ 210 (265)
T ss_pred HHHHHHHHhCCCeEEEEecCCchhhhHHHHHhccCc
Confidence 888888888888899999999998888888887764
No 401
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=27.02 E-value=94 Score=29.22 Aligned_cols=40 Identities=25% Similarity=0.472 Sum_probs=31.6
Q ss_pred HHHHHhhc--CeEEEEcCCCc--chHHHHHHHhccCCCceeeec
Q psy16206 56 LMCNATSE--GIAAIFGPQSI--ENRNIIESMCQMFDIPHVEAF 95 (821)
Q Consensus 56 ~a~~li~~--~V~aiiGp~~s--~~~~~v~~i~~~~~iP~is~~ 95 (821)
.+.+++.+ ++..++|+... .....+..+++..++|+++..
T Consensus 19 ~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~ 62 (162)
T TIGR00315 19 LVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATA 62 (162)
T ss_pred HHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC
Confidence 44444444 89999998764 788899999999999999764
No 402
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=26.98 E-value=3.2e+02 Score=28.09 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=31.0
Q ss_pred HHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 58 CNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 58 ~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
..|+++++.+++=.+.++++.++..+=+++++|+|..
T Consensus 61 ~~l~~~~ik~lVIACNTASa~al~~LR~~~~iPVvGv 97 (269)
T COG0796 61 DFLLERGIKALVIACNTASAVALEDLREKFDIPVVGV 97 (269)
T ss_pred HHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCEEEe
Confidence 3355559999999999999999999999999999865
No 403
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=26.95 E-value=1.8e+02 Score=29.72 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCC-cceEEeccccchhhh---ccee-ec-ccceeec
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQR-ADLAICDLTITSERR---AAVD-FT-MPFMTLG 515 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~R~---~~~~-fS-~p~~~~~ 515 (821)
-++.+.+.++.|.++++..- .-..+..++.+|. +|+.++.-.-..++. ..+. .+ .+|....
T Consensus 42 ~~l~~~Fe~~~g~~v~~~~~-------------~Sg~l~~qi~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~a~n~ 108 (257)
T PRK10677 42 QDIAAQYKKEKGVDVVSSFA-------------SSSTLARQIEQGAPADLFISADQKWMDYAVDKKAIDTATRYTLLGNS 108 (257)
T ss_pred HHHHHHHHhhhCCeEEEEec-------------ccHHHHHHHHcCCCCCEEEECCHHHHHHHHHCCCCCCcchheeecCE
Confidence 45667777777888887642 2235777888877 999977542222222 2232 22 2678889
Q ss_pred eEEEEEcCCC
Q psy16206 516 ISILYRKPAK 525 (821)
Q Consensus 516 ~~l~~~~~~~ 525 (821)
.+++++++.+
T Consensus 109 lvl~~~~~~~ 118 (257)
T PRK10677 109 LVVVAPKASE 118 (257)
T ss_pred EEEEEECCCc
Confidence 9999998743
No 404
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=26.78 E-value=1.7e+02 Score=31.89 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCCEEEEEEecCCc----hhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCC--CCCChHHHHHHhhcCCC
Q psy16206 122 KGISVIINDMDWDTFTIIYETHDN----LVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPP--DTDDYRPLLKEIKNSSE 194 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~--~~~d~~~~l~~lk~~~~ 194 (821)
+.+.+.++.++.+++.++++.... ...+.+.++.. |..+... .+.+ ..++....++.++..++
T Consensus 12 ~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~----------~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 81 (370)
T cd08551 12 EKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEA----------GIEVVIFDGVEPNPTLSNVDAAVAAYREEGC 81 (370)
T ss_pred HHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHc----------CCeEEEECCCCCCCCHHHHHHHHHHHHhcCC
Confidence 566777888888999999876532 23344444433 3444322 2333 24557788888888899
Q ss_pred cEEEEeCCh
Q psy16206 195 SHILLDCSM 203 (821)
Q Consensus 195 ~~ivl~~~~ 203 (821)
|.||-.+.+
T Consensus 82 d~IiaiGGG 90 (370)
T cd08551 82 DGVIAVGGG 90 (370)
T ss_pred CEEEEeCCc
Confidence 999977665
No 405
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.47 E-value=1.6e+02 Score=32.11 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCCEEEEEEecCC--chhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCCCcE
Q psy16206 122 KGISVIINDMDWDTFTIIYETHD--NLVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSSESH 196 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~~~~ 196 (821)
..+.+.++.+| +++.||++... ....+.++.+.+. ..|+.+... .+.++ .++....+..+++.++|.
T Consensus 15 ~~l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~-------~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~ 86 (380)
T cd08185 15 NELGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLK-------QAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDF 86 (380)
T ss_pred HHHHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHH-------HcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCE
Confidence 45666777788 99999997653 2223333333332 224545432 34433 445677778888899999
Q ss_pred EEEeCCh
Q psy16206 197 ILLDCSM 203 (821)
Q Consensus 197 ivl~~~~ 203 (821)
||-.+.+
T Consensus 87 IiavGGG 93 (380)
T cd08185 87 VVGLGGG 93 (380)
T ss_pred EEEeCCc
Confidence 9977665
No 406
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=26.41 E-value=4.3e+02 Score=27.31 Aligned_cols=125 Identities=12% Similarity=0.068 Sum_probs=72.6
Q ss_pred eEEEEcCCCc-------chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEE
Q psy16206 65 IAAIFGPQSI-------ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFT 137 (821)
Q Consensus 65 V~aiiGp~~s-------~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ 137 (821)
...|-||+.- ..|..+..+++..++++|--++-... +...+|.||-..-.. =-+-+.++-+.+|..-+.
T Consensus 17 ~~lIAGPC~iEs~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKA---pRTSp~sFrG~G~ee-GL~iL~~vk~~~glpvvT 92 (290)
T PLN03033 17 FFLLAGPNVIESEEHILRMAKHIKDISTKLGLPLVFKSSFDKA---NRTSSKSFRGPGMAE-GLKILEKVKVAYDLPIVT 92 (290)
T ss_pred eEEEecCChhcCHHHHHHHHHHHHHHHHhCCCcEEEEeeccCC---CCCCCCCCCCCCHHH-HHHHHHHHHHHHCCceEE
Confidence 4444477654 34556666677789999876443321 334677777544111 224455555668988777
Q ss_pred EEEecCC-------------c--hhHHHHHHHhcCCCCCcCCCCCCeEEEEE-cCCCCCChHHHHHHhhcCCCcEEEEe
Q psy16206 138 IIYETHD-------------N--LVYLQQVLENAHDDDKEIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNSSESHILLD 200 (821)
Q Consensus 138 ii~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~~~~~ivl~ 200 (821)
=|++..+ + ...-.+++.+++ ..|..|...+ .-....++....+++...+.+.|+++
T Consensus 93 eV~~~~q~~~vae~~DilQIgAr~~rqtdLL~a~~-------~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLc 164 (290)
T PLN03033 93 DVHESSQCEAVGKVADIIQIPAFLCRQTDLLVAAA-------KTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVC 164 (290)
T ss_pred eeCCHHHHHHHHhhCcEEeeCcHHHHHHHHHHHHH-------ccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 6666542 1 222345676666 5565565543 32335678888888888866655554
No 407
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=26.39 E-value=2.1e+02 Score=29.72 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=40.2
Q ss_pred EEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 38 LEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 38 l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
++..+.||=|.-...-.+++.+|..+ .+..|||...|+.+..+..+|...+.|.+-.
T Consensus 184 ~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~I 241 (281)
T PF02401_consen 184 LEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHI 241 (281)
T ss_dssp EE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEE
T ss_pred ccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEe
Confidence 44457775555455556677778777 8889999999999999999999998877655
No 408
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=26.37 E-value=1.5e+02 Score=31.51 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=47.0
Q ss_pred CChhHHHHHHHHHhhc-CeEEEE-cCCCc-----chHHHH-HHHhccCCCceeeeccC-CCCCCCCCCCccEEEEecChh
Q psy16206 48 YDSLHTAKLMCNATSE-GIAAIF-GPQSI-----ENRNII-ESMCQMFDIPHVEAFWD-PNKYFIPTNGVHGVNVYPESH 118 (821)
Q Consensus 48 ~~~~~a~~~a~~li~~-~V~aii-Gp~~s-----~~~~~v-~~i~~~~~iP~is~~~~-~~~~~~~~~~~~~~r~~p~~~ 118 (821)
.+...+.+..++++++ +.+++| ||... ..|..+ ..+.+.++||.|+.-.. .....--...-|.+.+.-+..
T Consensus 63 en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~~ENpgv~~yk~~~~Ivkt~~~a~ 142 (349)
T PF07355_consen 63 ENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMYEENPGVEMYKKDVYIVKTKKSAA 142 (349)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEecccChhHHHHhhccEEEECCCccc
Confidence 3677899999999999 888888 88654 223333 33677899999986322 111111234567888844444
Q ss_pred hHHH
Q psy16206 119 LISK 122 (821)
Q Consensus 119 ~~~~ 122 (821)
-+.+
T Consensus 143 gm~~ 146 (349)
T PF07355_consen 143 GMRD 146 (349)
T ss_pred cHHH
Confidence 3433
No 409
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=26.17 E-value=3.7e+02 Score=27.40 Aligned_cols=95 Identities=11% Similarity=0.089 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCCEEEEEEecCCc---hhHHHHHHHhcCCCCCcCCCCCCeEEEEEc---CCCCCChHHHHHHhhcCCCc
Q psy16206 122 KGISVIINDMDWDTFTIIYETHDN---LVYLQQVLENAHDDDKEIRPGRPSVTIRQL---PPDTDDYRPLLKEIKNSSES 195 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~---~~~~~d~~~~l~~lk~~~~~ 195 (821)
.-+-++++.++.+++.++.+...+ ...+++.++.. |..+..... .++..+......+++..+.+
T Consensus 8 ~~l~~~l~~~~~~~~lvv~d~~t~~~~g~~v~~~l~~~----------g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 77 (250)
T PF13685_consen 8 DKLPEILSELGLKKVLVVTDENTYKAAGEKVEESLKSA----------GIEVAVIEEFVGDADEDEVEKLVEALRPKDAD 77 (250)
T ss_dssp GGHHHHHGGGT-SEEEEEEETTHHHHHHHHHHHHHHTT----------T-EEEEEE-EE---BHHHHHHHHTTS--TT--
T ss_pred HHHHHHHHhcCCCcEEEEEcCCHHHHHHHHHHHHHHHc----------CCeEEEEecCCCCCCHHHHHHHHHHhcccCCC
Confidence 345677888888999999998864 34444455444 455553321 12122334445555556788
Q ss_pred EEEEeCChhHHHHHHHHHHHccccCcceEEEEec
Q psy16206 196 HILLDCSMDKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 196 ~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
.|+-.+.+...-..=..|.++++ .|.-+-|.
T Consensus 78 ~ii~vGgG~i~D~~K~~A~~~~~---p~isVPTa 108 (250)
T PF13685_consen 78 LIIGVGGGTIIDIAKYAAFELGI---PFISVPTA 108 (250)
T ss_dssp EEEEEESHHHHHHHHHHHHHHT-----EEEEES-
T ss_pred EEEEeCCcHHHHHHHHHHHhcCC---CEEEeccc
Confidence 88877776544333334556664 34444444
No 410
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=26.04 E-value=69 Score=34.23 Aligned_cols=71 Identities=10% Similarity=0.000 Sum_probs=45.7
Q ss_pred eHHHHHHHHHHHcCCeE-EEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccc--hhhh------cceeeccc
Q psy16206 440 YSVDLIKMIANELNFTY-KFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT--SERR------AAVDFTMP 510 (821)
Q Consensus 440 ~~~dll~~ia~~l~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t--~~R~------~~~~fS~p 510 (821)
+...+++.+.+.+|+++ +++..+ -.-+..+|.+|++|+.+..-..+ .... +.++-...
T Consensus 43 ~~t~v~~~iLe~~GY~V~e~~~~~-------------~~~~~~ala~GdiDv~~~~W~P~~~~~~~~~~~~~~v~~~g~~ 109 (331)
T PRK11119 43 FQTLLVSRALEKLGYDVNKPKEVD-------------YNVFYTSIANGDATFTAVNWFPLHDDMYEAAGGDKKFYREGVY 109 (331)
T ss_pred HHHHHHHHHHHHcCCceeeecccC-------------cHHHHHHHHcCCCeEehhhcccccHHHHHHhhccCcEEecccc
Confidence 34578888888899999 787553 36789999999999986433322 1111 12233333
Q ss_pred ceeeceEEEEEcC
Q psy16206 511 FMTLGISILYRKP 523 (821)
Q Consensus 511 ~~~~~~~l~~~~~ 523 (821)
+-.....+++|+.
T Consensus 110 ~~~a~~G~~VP~y 122 (331)
T PRK11119 110 VGGAAQGYLIDKK 122 (331)
T ss_pred CCCcceeeeecHH
Confidence 4455677888864
No 411
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=25.95 E-value=1.7e+02 Score=31.90 Aligned_cols=72 Identities=8% Similarity=0.070 Sum_probs=45.5
Q ss_pred HHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHHHHhhcCCCcEEEE
Q psy16206 122 KGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLLKEIKNSSESHILL 199 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l~~lk~~~~~~ivl 199 (821)
..+.+.++.++ +|+.|+++.... ...++.+.+. ..|+.+......++ .++..+.++.+++.++|.||-
T Consensus 12 ~~l~~~l~~~~-~r~livtd~~~~--~~~~v~~~L~-------~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 81 (374)
T cd08183 12 KELPALAAELG-RRVLLVTGASSL--RAAWLIEALR-------AAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIA 81 (374)
T ss_pred HHHHHHHHHcC-CcEEEEECCchH--HHHHHHHHHH-------HcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 44666677775 999999876543 4444444443 33455543333332 345677888888889999998
Q ss_pred eCCh
Q psy16206 200 DCSM 203 (821)
Q Consensus 200 ~~~~ 203 (821)
.+.+
T Consensus 82 iGGG 85 (374)
T cd08183 82 IGGG 85 (374)
T ss_pred ecCc
Confidence 8765
No 412
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=25.83 E-value=3.8e+02 Score=30.08 Aligned_cols=151 Identities=13% Similarity=0.168 Sum_probs=81.1
Q ss_pred CeEEEEcCCCcchHHHHHHHhccCC---CceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEE
Q psy16206 64 GIAAIFGPQSIENRNIIESMCQMFD---IPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIY 140 (821)
Q Consensus 64 ~V~aiiGp~~s~~~~~v~~i~~~~~---iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~ 140 (821)
++.-+.|..+++...|+.-....++ +|++.++- |.- .+ .+....+. ....+|...++..|.-.-++++.
T Consensus 197 ~aAhl~gF~gTdtv~A~~~a~~~Yg~~~~~~~G~SI-Pa~-----eH-S~~~s~~~-~~E~~AF~~~~~~~p~~~~s~v~ 268 (470)
T PHA02594 197 GLAHLYNFKGTDTVEALYMAKRYYGDDEVEMAGISV-PAR-----EH-STMCSYGA-ENEDEAFKNSLTLYGTGIYSIVS 268 (470)
T ss_pred HHHHhcCCccccchhHHHHHHHHhCCcccccccccc-chh-----hh-hhhhhcCC-chHHHHHHHHHHHCCCCcEEEEE
Confidence 3444667777777777666666677 78776421 211 01 11222222 23558888888888655567787
Q ss_pred ecCCchhHHHHHH-HhcCCCCCcCCCCCCeEEEEEcCCCCCChHHH----HHHhh--------cCC-----CcEEEEeCC
Q psy16206 141 ETHDNLVYLQQVL-ENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPL----LKEIK--------NSS-----ESHILLDCS 202 (821)
Q Consensus 141 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~----l~~lk--------~~~-----~~~ivl~~~ 202 (821)
|..|....+..++ +-.. ++...|..+ ..+. ++.|...+ ++.+. +.+ +++-|+.+.
T Consensus 269 DTYD~~~~v~~~i~~l~~----~i~~~~~~l-~IR~--DSGD~~~l~~~~~~~L~~~FG~~ln~~G~kvL~~~v~Ii~gd 341 (470)
T PHA02594 269 DTYDFKRAVTEILPELKD----EIMARGGKL-VIRP--DSGDPVDIICGALETLGEIFGGTVNSKGYKVLDEHVRLIQGD 341 (470)
T ss_pred ecccHHHHHHHHHHHHHH----HHHhCCCcE-EEeC--CCCCHHHHHHHHHHHHHHhcCCcccCccccccCCCeEEEEcC
Confidence 7777555665555 2111 000123334 3343 34555444 44441 112 455555544
Q ss_pred h---hHHHHHHHHHHHccccCcceEEEEec
Q psy16206 203 M---DKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 203 ~---~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
+ ..+..+++.+++.|.......|-+..
T Consensus 342 ~ide~~i~~il~~L~~~G~~a~n~~fGvGt 371 (470)
T PHA02594 342 GITLERINRILTRMKENGFASENVAFGMGG 371 (470)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCcceEecCc
Confidence 3 55777887788889766655555443
No 413
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=25.76 E-value=3.6e+02 Score=26.82 Aligned_cols=81 Identities=10% Similarity=-0.059 Sum_probs=52.8
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecC-CChhHHHHHHHHHhhcCeEEEEcCCCcchHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVEN-YDSLHTAKLMCNATSEGIAAIFGPQSIENRNII 80 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~-~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v 80 (821)
+||++.|..... . ...+....-+. +..+.... .. ++...-.+++++|..+|++.|+--+=......=
T Consensus 127 ~vGVivP~~eQ~-~----~~~~kW~~l~~------~~~~a~as-Py~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r 194 (221)
T PF07302_consen 127 QVGVIVPLPEQI-A----QQAEKWQPLGN------PVVVAAAS-PYEGDEEELAAAARELAEQGADLIVLDCMGYTQEMR 194 (221)
T ss_pred eEEEEecCHHHH-H----HHHHHHHhcCC------CeEEEEeC-CCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHH
Confidence 688999876622 1 22334443322 44444443 32 577788889999999999999876555555555
Q ss_pred HHHhccCCCceeee
Q psy16206 81 ESMCQMFDIPHVEA 94 (821)
Q Consensus 81 ~~i~~~~~iP~is~ 94 (821)
..+.+..++|+|-.
T Consensus 195 ~~~~~~~g~PVlLs 208 (221)
T PF07302_consen 195 DIVQRALGKPVLLS 208 (221)
T ss_pred HHHHHHhCCCEEeH
Confidence 66777889999864
No 414
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=25.63 E-value=1.6e+02 Score=30.07 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=45.3
Q ss_pred HHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEE
Q psy16206 442 VDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILY 520 (821)
Q Consensus 442 ~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~ 520 (821)
.+++..+.++. +.+++++. ++..+++..|.+|++|+++..-..+ ...+ -..|+.....++++
T Consensus 100 ~~~l~~~~~~~p~v~l~i~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~~-~~~~l~~~~~~lv~ 162 (279)
T TIGR03339 100 LDLVARFRQRYPGIEVSVRI-------------GNSQEVLQALQSYRVDVAVSSEVVD---DPRL-DRVVLGNDPLVAVV 162 (279)
T ss_pred HHHHHHHHHHCCCcEEEEEE-------------CCHHHHHHHHHcCCCcEEEEecccC---CCce-EEEEcCCceEEEEE
Confidence 46677777654 46676662 2467789999999999997532221 2223 24678888899998
Q ss_pred EcCCC
Q psy16206 521 RKPAK 525 (821)
Q Consensus 521 ~~~~~ 525 (821)
+++.+
T Consensus 163 s~~~p 167 (279)
T TIGR03339 163 HRQHP 167 (279)
T ss_pred CCCCc
Confidence 87654
No 415
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=25.58 E-value=89 Score=32.38 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=30.8
Q ss_pred eHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEec
Q psy16206 440 YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICD 494 (821)
Q Consensus 440 ~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~ 494 (821)
...=....+++++|.+++++++. .-.+++.+|..|++|+++..
T Consensus 117 ~~hl~~~~l~~~~G~~~~~Vpy~------------G~~~~~~allgG~vd~~~~~ 159 (274)
T PF03401_consen 117 SDHLAAALLAKAAGIKFTHVPYD------------GGAEALTALLGGHVDAAFGS 159 (274)
T ss_dssp HHHHHHHHHHHHHT---EEEE-S------------SHHHHHHHHHTTSSSEEEEE
T ss_pred hHHHHHHHHHHHhCCceEEEEeC------------CccHHHHHHhCCeeeEEeec
Confidence 33445577889999999998775 45789999999999998754
No 416
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=25.50 E-value=67 Score=28.08 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=28.0
Q ss_pred eEEEEcCCCcchHHHHHHHhccCCCceeeecc
Q psy16206 65 IAAIFGPQSIENRNIIESMCQMFDIPHVEAFW 96 (821)
Q Consensus 65 V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~ 96 (821)
|.+|.||.+|.=+..+..+++.++++++....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 56899999999999999999999999987743
No 417
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=25.39 E-value=1.7e+02 Score=32.37 Aligned_cols=73 Identities=5% Similarity=0.095 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCCc----hhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCC
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHDN----LVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSS 193 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~ 193 (821)
.+.+.+.++.+|.+++.|+++..-. ...+.+.++.. |+.+... .+.++ .++....++.+++.+
T Consensus 11 ~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~----------gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~ 80 (414)
T cd08190 11 TAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAA----------GINFEVYDDVRVEPTDESFKDAIAFAKKGQ 80 (414)
T ss_pred HHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHc----------CCcEEEeCCCCCCcCHHHHHHHHHHHHhcC
Confidence 3556777888999999999886532 34444444443 3444432 23332 445677788888899
Q ss_pred CcEEEEeCCh
Q psy16206 194 ESHILLDCSM 203 (821)
Q Consensus 194 ~~~ivl~~~~ 203 (821)
+|.||-.+.+
T Consensus 81 ~D~IIaiGGG 90 (414)
T cd08190 81 FDAFVAVGGG 90 (414)
T ss_pred CCEEEEeCCc
Confidence 9999988765
No 418
>PRK10481 hypothetical protein; Provisional
Probab=25.24 E-value=3.1e+02 Score=27.42 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=44.3
Q ss_pred HHHHHh-CCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEE---cCCCCCChHHHHHHhhcCCCcEEEEe
Q psy16206 125 SVIIND-MDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQ---LPPDTDDYRPLLKEIKNSSESHILLD 200 (821)
Q Consensus 125 ~~~~~~-~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~---~~~~~~d~~~~l~~lk~~~~~~ivl~ 200 (821)
..++.. -+-++++|+....+..+...+-+.+.+ ..+.... +........+..++++..++|+|++.
T Consensus 120 ~~lv~Al~~g~riGVitP~~~qi~~~~~kw~~~G----------~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~ 189 (224)
T PRK10481 120 PPLVAAIVGGHQVGVIVPVEEQLAQQAQKWQVLQ----------KPPVFALASPYHGSEEELIDAGKELLDQGADVIVLD 189 (224)
T ss_pred HHHHHHhcCCCeEEEEEeCHHHHHHHHHHHHhcC----------CceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEe
Confidence 444443 345899999998765454444444445 2333222 21112246667777888899999999
Q ss_pred CChhHH
Q psy16206 201 CSMDKT 206 (821)
Q Consensus 201 ~~~~~~ 206 (821)
|.+-..
T Consensus 190 C~G~~~ 195 (224)
T PRK10481 190 CLGYHQ 195 (224)
T ss_pred CCCcCH
Confidence 987554
No 419
>PRK12682 transcriptional regulator CysB-like protein; Reviewed
Probab=25.04 E-value=2e+02 Score=30.23 Aligned_cols=71 Identities=8% Similarity=0.120 Sum_probs=48.2
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++.. ++-+.+++.|.+|++|+++..... .....+. +.|+.....+
T Consensus 106 ~~l~~~l~~~~~~~P~i~i~i~~-------------~~~~~~~~~l~~g~~D~~i~~~~~--~~~~~l~-~~~l~~~~~~ 169 (309)
T PRK12682 106 YVLPRVVAAFRKRYPKVNLSLHQ-------------GSPDEIARMVISGEADIGIATESL--ADDPDLA-TLPCYDWQHA 169 (309)
T ss_pred HHHHHHHHHHHHhCCCeEEEEec-------------CCHHHHHHHHHcCCccEEEecCcc--cCCCcce-EEEeeeeeEE
Confidence 34568888887765 56777762 245679999999999999763221 1122333 4578888889
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++.+.+
T Consensus 170 ~~~~~~~p 177 (309)
T PRK12682 170 VIVPPDHP 177 (309)
T ss_pred EEecCCCc
Confidence 98887654
No 420
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=25.02 E-value=7.8e+02 Score=25.42 Aligned_cols=134 Identities=10% Similarity=0.104 Sum_probs=73.8
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHH--hcCCCCCCC---ceEEE--EEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCC
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRI--NKDFKALPP---DIILE--PIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQ 72 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~i--N~~~~~ll~---~~~l~--~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~ 72 (821)
|+|.+..+.+. ....|+..|.++= -.++- +.+ +..++ +.+.| +.|+.++++.+..|+.. .+++++...
T Consensus 1 ~~~ava~a~d~-~~l~av~~a~~~g~~~~~~i-lvg~~~~~~~~~~~~ii~--~~~~~~aa~~av~lv~~G~aD~lmkG~ 76 (271)
T TIGR02709 1 ITVSIAGGSQP-EILQLVKKALKEAEQPLQFI-VFDTNENLDTENLWKYVH--CSDEAAVAQEAVSLVATGQAQILLKGI 76 (271)
T ss_pred CEEEEEecCCH-HHHHHHHHHHHcCCceeEEE-EEcCcccCCcccCeeEEE--CCChHHHHHHHHHHHHCCCCCEEEcCC
Confidence 56666666543 5566777776652 12221 111 22222 34444 46899999999999999 899999665
Q ss_pred CcchHHHHHHHhc----cCCCceeeeccCCCCCCCCCCCccE-----EEEecChhhHHH---HHHHHHHhCCC--CEEEE
Q psy16206 73 SIENRNIIESMCQ----MFDIPHVEAFWDPNKYFIPTNGVHG-----VNVYPESHLISK---GISVIINDMDW--DTFTI 138 (821)
Q Consensus 73 ~s~~~~~v~~i~~----~~~iP~is~~~~~~~~~~~~~~~~~-----~r~~p~~~~~~~---al~~~~~~~~w--~~v~i 138 (821)
-... ..+..+.+ .-..+.+|..+--.. +....++ +...|+.....+ ..+++++.+|+ -||++
T Consensus 77 i~T~-~~lravl~~~~gl~~~~~~S~v~i~~~---p~~~~l~~tD~~vn~~P~~eqk~~I~~nA~~~ar~lGie~PkVAl 152 (271)
T TIGR02709 77 IQTH-TLLKEMLKSEHQLKNKPILSHVAMVEL---PAGKTFLLTDCAMNIAPTQATLIEIVENAKEVAQKLGLHHPKIAL 152 (271)
T ss_pred cCcH-HHHHHHHHHHcCCCCCCeeEEEEEEEe---cCCCEEEEECCCccCCcCHHHHHHHHHHHHHHHHHcCCCCCeEEE
Confidence 4433 33333332 223355554211111 2223333 345666654433 44556777898 69999
Q ss_pred EEec
Q psy16206 139 IYET 142 (821)
Q Consensus 139 i~~~ 142 (821)
+...
T Consensus 153 LS~s 156 (271)
T TIGR02709 153 LSAA 156 (271)
T ss_pred Eecc
Confidence 8643
No 421
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=25.01 E-value=1.7e+02 Score=31.76 Aligned_cols=80 Identities=10% Similarity=0.090 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCCCEEEEEEecCC----chhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCCC
Q psy16206 122 KGISVIINDMDWDTFTIIYETHD----NLVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSSE 194 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~~ 194 (821)
+.+.+.++.+|.+++.|+++... ....+.+.++.. |..+... .+.++ .++....++.+++.++
T Consensus 13 ~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~----------g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~ 82 (370)
T cd08192 13 KELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDA----------GLAAALFDEVPPNPTEAAVEAGLAAYRAGGC 82 (370)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHc----------CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 45677788889999999987553 233444444443 4555433 34332 4457778888888899
Q ss_pred cEEEEeCCh--hHHHHHHH
Q psy16206 195 SHILLDCSM--DKTVTILK 211 (821)
Q Consensus 195 ~~ivl~~~~--~~~~~~l~ 211 (821)
|.||-.+.+ -++..++.
T Consensus 83 d~IIaiGGGSviD~aK~ia 101 (370)
T cd08192 83 DGVIAFGGGSALDLAKAVA 101 (370)
T ss_pred CEEEEeCCchHHHHHHHHH
Confidence 999977665 33444443
No 422
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=25.00 E-value=3.1e+02 Score=29.21 Aligned_cols=81 Identities=7% Similarity=0.083 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEE
Q psy16206 120 ISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILL 199 (821)
Q Consensus 120 ~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl 199 (821)
-+..+..+.++++-+++.|+-+.-..-...+.+++.+. +.|..+.+.... +....+++-+..+.+++++
T Consensus 176 HGQV~~~W~~~~~~~~IiVvdD~vA~D~~~k~~lk~A~-------P~gvk~~i~sv~----~a~~~l~~~~~~~~~vlil 244 (322)
T PRK15088 176 HGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVA-------PPGVTAHVVDVA----KMIRVYNNPKYAGERVMLL 244 (322)
T ss_pred hHHHHHHHhhccCCCEEEEeCccccCCHHHHHHHHhcC-------CCCCeEEEEEHH----HHHHHHhCCCCCCCeEEEE
Confidence 36678889999999999888665555566677777776 778777765542 2333333333346678888
Q ss_pred eCChhHHHHHHH
Q psy16206 200 DCSMDKTVTILK 211 (821)
Q Consensus 200 ~~~~~~~~~~l~ 211 (821)
.-++.++..+++
T Consensus 245 ~k~p~d~~~l~~ 256 (322)
T PRK15088 245 FTNPTDVERLVE 256 (322)
T ss_pred ECCHHHHHHHHH
Confidence 999999888876
No 423
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=24.92 E-value=1.9e+02 Score=26.28 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEe
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAIC 493 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~ 493 (821)
.+.++..++..|+++.-+..+++.-|.. .+-..+..+++.++.|++|.++.
T Consensus 24 ~~~l~~~a~~~g~~i~~~~~D~~~SG~~-~~Rp~l~~ll~~~~~g~vd~vvv 74 (140)
T cd03770 24 KAILEEYAKENGLENIRHYIDDGFSGTT-FDRPGFNRMIEDIEAGKIDIVIV 74 (140)
T ss_pred HHHHHHHHHHCCCEEEEEEEcCCCcCCc-CCCHHHHHHHHHHHcCCCCEEEE
Confidence 4567888999999865443333233332 11337899999999999999864
No 424
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=24.87 E-value=7.6e+02 Score=26.92 Aligned_cols=12 Identities=0% Similarity=0.036 Sum_probs=5.9
Q ss_pred CCCEEEEEEecC
Q psy16206 132 DWDTFTIIYETH 143 (821)
Q Consensus 132 ~w~~v~ii~~~~ 143 (821)
|-++|+++..|.
T Consensus 166 G~~~V~lit~D~ 177 (374)
T PRK14722 166 GASKVALLTTDS 177 (374)
T ss_pred CCCeEEEEeccc
Confidence 334555555444
No 425
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=24.83 E-value=1.7e+02 Score=32.04 Aligned_cols=73 Identities=8% Similarity=0.062 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCC----chhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCC
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHD----NLVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSS 193 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~ 193 (821)
.+.+.+.++.+|.+++.|+++..- ....+.+.++..+ +.+... ...++ .++.....+.+++.+
T Consensus 17 l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~----------i~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 86 (379)
T TIGR02638 17 IEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAG----------IAYELFDEVKPNPTITVVKAGVAAFKASG 86 (379)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCC----------CeEEEECCCCCCcCHHHHHHHHHHHHhcC
Confidence 355667788899999999987653 2344555555443 444433 23332 445667888888899
Q ss_pred CcEEEEeCCh
Q psy16206 194 ESHILLDCSM 203 (821)
Q Consensus 194 ~~~ivl~~~~ 203 (821)
+|.||-.+.+
T Consensus 87 ~D~IiaiGGG 96 (379)
T TIGR02638 87 ADYLIAIGGG 96 (379)
T ss_pred CCEEEEeCCh
Confidence 9999987765
No 426
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.74 E-value=1.7e+02 Score=29.82 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=32.4
Q ss_pred CCCCeEEEEEcCC-CCCChHHHHHHhhcCCCcEEEEeCCh-hHHHHHHHHHHHccc
Q psy16206 165 PGRPSVTIRQLPP-DTDDYRPLLKEIKNSSESHILLDCSM-DKTVTILKQAKEVHL 218 (821)
Q Consensus 165 ~~g~~v~~~~~~~-~~~d~~~~l~~lk~~~~~~ivl~~~~-~~~~~~l~~a~~~g~ 218 (821)
..|..+....... +.......++++.+.+++.|++.... ......++.+.+.|+
T Consensus 28 ~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~i 83 (271)
T cd06312 28 DLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAAGI 83 (271)
T ss_pred HhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCC
Confidence 3456665443322 22334567777777899998876543 334456777777665
No 427
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=24.68 E-value=2.6e+02 Score=28.62 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=66.6
Q ss_pred EecChhhHHHHHHHHHHhCCCCEEEEEEec-CC----chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHH
Q psy16206 113 VYPESHLISKGISVIINDMDWDTFTIIYET-HD----NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLK 187 (821)
Q Consensus 113 ~~p~~~~~~~al~~~~~~~~w~~v~ii~~~-~~----~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~ 187 (821)
-.|.|...-+-+|+-++.+|.+.|.|-.-+ || |...+.+..++.. ..+-.+.++.+.++-.--...|+
T Consensus 94 P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ir-------e~~P~t~iEvL~PDF~G~~~al~ 166 (306)
T COG0320 94 PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIR-------ELNPQTTIEVLTPDFRGNDDALE 166 (306)
T ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHH-------hhCCCceEEEeCccccCCHHHHH
Confidence 456677788999999999999999875543 22 5667777666654 33444566666555333556777
Q ss_pred HhhcCCCcEEEEe--------------CChhHHHHHHHHHHHcc
Q psy16206 188 EIKNSSESHILLD--------------CSMDKTVTILKQAKEVH 217 (821)
Q Consensus 188 ~lk~~~~~~ivl~--------------~~~~~~~~~l~~a~~~g 217 (821)
.+.+++++++=-+ ........+|+++++++
T Consensus 167 ~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~ 210 (306)
T COG0320 167 IVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELG 210 (306)
T ss_pred HHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhC
Confidence 8888887765322 22356788999999988
No 428
>cd08428 PBP2_IciA_ArgP The C-terminal substrate binding domain of LysR-type transcriptional regulator, ArgP (IciA), for arginine exporter (ArgO); contains the type 2 periplasmic binding fold. The inhibitor of chromosomal replication (iciA) protein encoded by Mycobacterium tuberculosis, which is implicated in chromosome replication initiation in vitro, has been identified as arginine permease (ArgP), a LysR-type transcriptional regulator for arginine outward transport, based on the same amino sequence and similar DNA binding targets. Arp has been shown to regulate various targets including DnaA (replication), ArgO (arginine export), dapB (lysine biosynthesis), and gdhA (glutamate biosynthesis). With abundant nutrition, ArgP activates the DnaA gene (to increase replication) and the ArgO (to export redundant molecules). However, when nutrition supply is limited, it is suggested that ArgP might function as an inhibitor of chromosome replication in order to slow replication. This substrate-
Probab=24.65 E-value=1.7e+02 Score=27.44 Aligned_cols=65 Identities=3% Similarity=-0.018 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEE
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYR 521 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~ 521 (821)
...+..+.++.+.++++.. ++...+.+.+.+|++|+++..- +.....+ .+.++......++++
T Consensus 16 ~~~l~~f~~~~~v~l~l~~-------------~~~~~~~~~l~~~~~D~~i~~~---~~~~~~~-~~~~l~~~~~~~~~~ 78 (195)
T cd08428 16 LPALAPVLKRERILLDLIV-------------DDEDRTHDLLRDGEVVGCISTQ---AQPMQGC-RSDYLGSMDYLLVAS 78 (195)
T ss_pred HHHHHHHHhCcCeEEEEEe-------------CCchhHHHHHHcCcceEEEEec---CCCCCCc-eeEEeeeeeEEEEEC
Confidence 4567777776555555552 2456789999999999876421 1222222 355777778887776
Q ss_pred cC
Q psy16206 522 KP 523 (821)
Q Consensus 522 ~~ 523 (821)
.+
T Consensus 79 ~~ 80 (195)
T cd08428 79 PD 80 (195)
T ss_pred Cc
Confidence 54
No 429
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=24.30 E-value=4.5e+02 Score=31.65 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=14.8
Q ss_pred eeHHHHHHHHHHHcCCeE
Q psy16206 439 GYSVDLIKMIANELNFTY 456 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~ 456 (821)
+=+...+.++++.++|..
T Consensus 588 ~g~~~~l~~~a~~l~~~~ 605 (767)
T PRK14723 588 DGCPTKLDAVADTLGFHP 605 (767)
T ss_pred CCcchHHHHHHhhcCccc
Confidence 667889999999988764
No 430
>PRK10481 hypothetical protein; Provisional
Probab=24.30 E-value=3.1e+02 Score=27.40 Aligned_cols=48 Identities=8% Similarity=-0.058 Sum_probs=35.0
Q ss_pred CChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeeec
Q psy16206 48 YDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAF 95 (821)
Q Consensus 48 ~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~ 95 (821)
.++....+++.+|..+|+++|+=.+..-.......+-+..++|+|.+.
T Consensus 166 ~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n 213 (224)
T PRK10481 166 GSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLLSN 213 (224)
T ss_pred CCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHH
Confidence 455567778888887899999844444333666778888999999864
No 431
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=23.97 E-value=1.8e+02 Score=31.69 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=47.4
Q ss_pred HHHHHHHHhCCCCEEEEEEecCC----chhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCCC
Q psy16206 122 KGISVIINDMDWDTFTIIYETHD----NLVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSSE 194 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~~ 194 (821)
+.+.+.+..++.+++.|+++..- ..+.+.+.+++. ++.+... .+.++ .++....++.+++.++
T Consensus 15 ~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~----------~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~ 84 (376)
T cd08193 15 ARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAA----------GIEVTVFDDVEADPPEAVVEAAVEAARAAGA 84 (376)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHc----------CCeEEEECCCCCCcCHHHHHHHHHHHHhcCC
Confidence 45667788889999999987652 234444444444 3444322 23332 4457788888888999
Q ss_pred cEEEEeCCh
Q psy16206 195 SHILLDCSM 203 (821)
Q Consensus 195 ~~ivl~~~~ 203 (821)
|.||-.+.+
T Consensus 85 D~IIaiGGG 93 (376)
T cd08193 85 DGVIGFGGG 93 (376)
T ss_pred CEEEEeCCc
Confidence 999988765
No 432
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=23.93 E-value=1.6e+02 Score=28.60 Aligned_cols=71 Identities=15% Similarity=0.061 Sum_probs=46.0
Q ss_pred HHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHh---hc-CeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 22 VRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNAT---SE-GIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 22 v~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li---~~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
.+.||+.+. +++|--|.....=..+.||......+..+. .. ++++|+||....-..+ ..++...++|++..
T Consensus 5 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la-~~lA~~Lg~p~v~v 79 (191)
T TIGR01744 5 KQKIKEEGV-VLPGGILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPA-IMTGLKLGVPVVFA 79 (191)
T ss_pred HHHHhcCCE-EcCCCEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHH-HHHHHHHCCCEEEE
Confidence 567887776 777755555544312346755544444443 33 7999999887766554 45677889999876
No 433
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=23.82 E-value=2.7e+02 Score=24.69 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=37.3
Q ss_pred ChhHHHHHHHHHhhcCeEEEE---cCCCcchHHHHHHHhccCCCceeeecc
Q psy16206 49 DSLHTAKLMCNATSEGIAAIF---GPQSIENRNIIESMCQMFDIPHVEAFW 96 (821)
Q Consensus 49 ~~~~a~~~a~~li~~~V~aii---Gp~~s~~~~~v~~i~~~~~iP~is~~~ 96 (821)
++..-.+...+|.+.|+.|+. |+........+...|+++++|++....
T Consensus 57 ~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~ 107 (123)
T PF07905_consen 57 DEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPW 107 (123)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCC
Confidence 455566667777777777774 777777888889999999999998754
No 434
>TIGR00975 3a0107s03 phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins.
Probab=23.59 E-value=2.6e+02 Score=29.66 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcce--e-ecccceeece
Q psy16206 441 SVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAV--D-FTMPFMTLGI 516 (821)
Q Consensus 441 ~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~--~-fS~p~~~~~~ 516 (821)
.-++.+.+.++. +.++++.. .|+ ..-+.++.+|++|+++++-.++++..+.. . ...|+..+.+
T Consensus 13 ~~~~~~~y~~~~~~v~v~v~~------------~GS-g~Gi~~l~~g~~dia~ssr~l~~~E~~~~~~~~~~~pva~dai 79 (314)
T TIGR00975 13 YTKWFPDYQKSNPGVTINYQG------------IGS-GAGIAQFAAGTVDFGASDAPLSEADLASRGSGLLQFPTVIGAI 79 (314)
T ss_pred HHHHHHHHHHhCCCceEEEec------------CCC-HHHHHHHHcCCCCEEecCCCCCHHHHHhhcCCcEEeeEEeeeE
Confidence 334445554432 55666642 234 44578899999999998887875533322 2 2348888899
Q ss_pred EEEEEcC
Q psy16206 517 SILYRKP 523 (821)
Q Consensus 517 ~l~~~~~ 523 (821)
++++..+
T Consensus 80 ~vivn~~ 86 (314)
T TIGR00975 80 VVTYNLP 86 (314)
T ss_pred EEEEeCC
Confidence 9998864
No 435
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.57 E-value=2.3e+02 Score=29.26 Aligned_cols=54 Identities=6% Similarity=0.081 Sum_probs=33.9
Q ss_pred CCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCC-hhHHHHHHHHHHHccc
Q psy16206 165 PGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCS-MDKTVTILKQAKEVHL 218 (821)
Q Consensus 165 ~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~-~~~~~~~l~~a~~~g~ 218 (821)
..|..+.......+.......++.+.+.+++.|++... .......++++.+.|.
T Consensus 27 ~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~~i 81 (288)
T cd01538 27 ELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADAGI 81 (288)
T ss_pred HcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHCCC
Confidence 44566655433222233456777777789999887654 3445667788887665
No 436
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria.
Probab=23.47 E-value=2.2e+02 Score=29.60 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEE
Q psy16206 441 SVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISIL 519 (821)
Q Consensus 441 ~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~ 519 (821)
-.+++..+.++. +.++.++. .+...++.++.+|++|+++..... +.....+. ..|+.....+++
T Consensus 108 ~~~~l~~~~~~~P~~~i~~~~-------------~~~~~~~~~l~~g~~D~~i~~~~~-~~~~~~~~-~~~l~~~~~~~~ 172 (300)
T TIGR02424 108 MPEVVKRFLARAPRLRVRIMT-------------GPNAYLLDQLRVGALDLVVGRLGA-PETMQGLS-FEHLYNEPVVFV 172 (300)
T ss_pred hHHHHHHHHHhCCCcEEEEEe-------------CchHHHHHHHHCCCCCEEEEecCC-ccccccee-eeeecCCceEEE
Confidence 356777776665 45566653 245778999999999999853322 12222332 457888888988
Q ss_pred EEcCCC
Q psy16206 520 YRKPAK 525 (821)
Q Consensus 520 ~~~~~~ 525 (821)
+++..+
T Consensus 173 ~~~~hp 178 (300)
T TIGR02424 173 VRAGHP 178 (300)
T ss_pred EcCCCc
Confidence 887654
No 437
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.20 E-value=7e+02 Score=24.93 Aligned_cols=116 Identities=9% Similarity=0.000 Sum_probs=59.0
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~ 75 (821)
+|+.+....+ ..-..|++-++++.+-. .. ....... + .+...+.+.+.+++.. .+.||+......
T Consensus 124 ~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~-----~~--~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~ 194 (270)
T cd06294 124 KIAFVGGDLDLEVTQDRLQGYKQALEDHGIP-----DR--NEVIISL-D-FSEEGGYKALKKLLEQHPRPTAIVATDDLL 194 (270)
T ss_pred cEEEecCCcccHHHHHHHHHHHHHHHHcCCC-----CC--cceEEec-C-CchHHHHHHHHHHHhCCCCCCEEEECChHH
Confidence 4666654433 23356777777653211 11 1111111 2 3445566777777765 589999865433
Q ss_pred hHHHHHHHhccCCC------ceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 76 NRNIIESMCQMFDI------PHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 76 ~~~~v~~i~~~~~i------P~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
+..+...+.+.++ .++++..++.. ....|.+..+..+...+++..++.+..
T Consensus 195 -a~g~~~al~~~g~~iP~dv~vig~d~~~~~---~~~~p~l~~i~~~~~~~g~~a~~~l~~ 251 (270)
T cd06294 195 -ALGVLKVLNELGLKVPEDLSIIGFNNSILS---ELAHPPLTSVDINPRELGYEAAELLID 251 (270)
T ss_pred -HHHHHHHHHHcCCCCCcceEEEeeCChhhh---hccCCCceEeccCHHHHHHHHHHHHHH
Confidence 3333343444443 34555433221 223455555666666777777766644
No 438
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=23.00 E-value=6e+02 Score=25.41 Aligned_cols=78 Identities=9% Similarity=-0.100 Sum_probs=42.5
Q ss_pred CChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCC------ceeeeccCCCCCCCCCCCccEEEEecChhhHH
Q psy16206 48 YDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDI------PHVEAFWDPNKYFIPTNGVHGVNVYPESHLIS 121 (821)
Q Consensus 48 ~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~i------P~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~ 121 (821)
.+...+.+.+.++++.++.||+...+.. +..+...+...++ .++++...+.. ....+-+-.+..+...++
T Consensus 159 ~~~~~~~~~~~~~l~~~~~av~~~~d~~-a~gv~~al~~~g~~vp~dv~v~g~d~~~~~---~~~~~~~ttv~~~~~~~g 234 (265)
T cd06299 159 YSQESGYAGATKLLDQGATAIIAGDSMM-TIGAIRAIHDAGLVIGEDISLIGFDDLPVF---RLQTPPLTVIDQQVEQMG 234 (265)
T ss_pred cchHHHHHHHHHHHcCCCCEEEEcCcHH-HHHHHHHHHHhCCCCCcceeEEEeCCHHHH---hccCCCceEEeCCHHHHH
Confidence 3455666777777776788888876554 4444455555443 34444332221 112233334455556677
Q ss_pred HHHHHHHH
Q psy16206 122 KGISVIIN 129 (821)
Q Consensus 122 ~al~~~~~ 129 (821)
+..++++.
T Consensus 235 ~~a~~~l~ 242 (265)
T cd06299 235 KRAVDMLL 242 (265)
T ss_pred HHHHHHHH
Confidence 76666553
No 439
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=22.85 E-value=1.9e+02 Score=28.83 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 166 GRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 166 ~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
.|..+.......+.......++.+.+.+++.|++......... ++.+.+.|+.
T Consensus 28 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~~ip 80 (264)
T cd06267 28 AGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL-LEELAALGIP 80 (264)
T ss_pred cCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH-HHHHHHcCCC
Confidence 3555554433222233566777787889999888766555544 7777777763
No 440
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.80 E-value=2.4e+02 Score=28.59 Aligned_cols=55 Identities=7% Similarity=0.046 Sum_probs=32.1
Q ss_pred CCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCC-hhHHHHHHHHHHHcccc
Q psy16206 165 PGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCS-MDKTVTILKQAKEVHLM 219 (821)
Q Consensus 165 ~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~-~~~~~~~l~~a~~~g~~ 219 (821)
..|..+....-..+.......++.+.+.+++.||+... .......++++.+.|++
T Consensus 27 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ip 82 (273)
T cd06305 27 ALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIP 82 (273)
T ss_pred HcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCC
Confidence 34566554322222223445666666778999888643 33345677788877763
No 441
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=22.70 E-value=6.8e+02 Score=25.07 Aligned_cols=58 Identities=22% Similarity=0.215 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEec--CCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 12 EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVE--NYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 12 ~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~--~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
++.-+..+||-|-++.+ =.|||++-.. + .-|+.+..+++..|+++|..+ =|+|+..-.
T Consensus 83 eEAv~tArlARE~~~t~------wiKlEVi~d~-~tLlPD~~etl~Aae~Lv~eGF~V--lPY~~dD~v 142 (262)
T COG2022 83 EEAVRTARLAREALGTN------WIKLEVIGDE-KTLLPDPIETLKAAEQLVKEGFVV--LPYTTDDPV 142 (262)
T ss_pred HHHHHHHHHHHHHccCC------eEEEEEecCC-cccCCChHHHHHHHHHHHhCCCEE--eeccCCCHH
Confidence 55666777777776633 1355555432 2 348999999999999887643 355554443
No 442
>TIGR02285 conserved hypothetical protein. Members of this family are found in several Proteobacteria, including Pseudomonas putida KT2440, Bdellovibrio bacteriovorus HD100 (three members), Aeromonas hydrophila, and Chromobacterium violaceum ATCC 12472. The function is unknown.
Probab=22.66 E-value=51 Score=33.93 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=30.7
Q ss_pred CccceecchHHHHHhhc-CceEEEEEccCCcccccCCCCCcchhhHHHHhhcccee
Q psy16206 682 ELYGYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTF 736 (821)
Q Consensus 682 ~~~g~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 736 (821)
+..|+..++++.+.+.+ +++++++. ..|..++..+..+.+.+
T Consensus 38 ~~~G~~~~i~~~i~~~~~~~~~~~~~-------------~pw~r~l~~l~~~~d~~ 80 (268)
T TIGR02285 38 KGRGVFDVILQEIRRALPQYEHRFVR-------------VSFARSLKELQGKGGVC 80 (268)
T ss_pred CCCChHHHHHHHHHHHcCCCceeEEE-------------CCHHHHHHHHhcCCCeE
Confidence 45687788889998888 77777653 24999999995555553
No 443
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=22.63 E-value=6.1e+02 Score=27.40 Aligned_cols=87 Identities=7% Similarity=0.093 Sum_probs=48.7
Q ss_pred CccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcC---C--CCCC
Q psy16206 107 GVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLP---P--DTDD 181 (821)
Q Consensus 107 ~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~---~--~~~d 181 (821)
.|+-+...+.. .+.+.+.++.++.+++.++++..-.....+++.+... ..|..+....++ + ..++
T Consensus 8 ~~~~v~~G~g~---~~~l~~~l~~~~~~~~livtd~~~~~~~~~~v~~~L~-------~~gi~~~~~~~~~~e~~~~~~~ 77 (358)
T PRK00002 8 RSYPIIIGKGL---LSELGELLAPLKGKKVAIVTDETVAPLYLEKLRASLE-------AAGFEVDVVVLPDGEQYKSLET 77 (358)
T ss_pred CCCcEEEeCCh---HHHHHHHHHhcCCCeEEEEECCchHHHHHHHHHHHHH-------hcCCceEEEEeCCCCCCCCHHH
Confidence 34555555543 2456667777788999999976543333333333332 224444432222 2 2344
Q ss_pred hHHHHHHhhcCCC---cEEEEeCCh
Q psy16206 182 YRPLLKEIKNSSE---SHILLDCSM 203 (821)
Q Consensus 182 ~~~~l~~lk~~~~---~~ivl~~~~ 203 (821)
+...++.+++.++ +.||..+.+
T Consensus 78 v~~~~~~~~~~~~~r~d~IIavGGG 102 (358)
T PRK00002 78 LEKIYDALLEAGLDRSDTLIALGGG 102 (358)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCc
Confidence 6667777777654 888877665
No 444
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=22.57 E-value=1.4e+02 Score=30.99 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=30.2
Q ss_pred HHHHHHHH-HHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEE
Q psy16206 442 VDLIKMIA-NELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAI 492 (821)
Q Consensus 442 ~dll~~ia-~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~ 492 (821)
.++++.+. ++.|++++++.++ ++..+..+|.+|++|+..
T Consensus 46 ~~~~~~~l~~~~G~~Vel~~f~------------~~~~~~~ALa~GdID~~~ 85 (271)
T PRK11063 46 AEVAQKVAKEKYGLDVELVTFN------------DYVLPNEALSKGDIDANA 85 (271)
T ss_pred HHHHHHHHHHhcCCeEEEEEec------------CcHHHHHHHHcCCcceec
Confidence 34444444 5569999999875 678899999999999964
No 445
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=22.49 E-value=5.8e+02 Score=23.08 Aligned_cols=115 Identities=14% Similarity=0.037 Sum_probs=60.1
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s~~ 76 (821)
+||.+.+..+ ..-..|++.|+++.+-. ......... ............++++ ++.|||...+...
T Consensus 11 ~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~l~~~~pdaii~~~~~~a 80 (160)
T PF13377_consen 11 RIAFIGGPPNSSVSRERLEGFREALKEHGIE---------FEELIFFSD-DDSEDAREAQLLWLRRLRPDAIICSNDRLA 80 (160)
T ss_dssp SEEEEESSTTSHHHHHHHHHHHHHHHHTTSE---------EEGEEEEES-SSHHHHHHHHHHHHHTCSSSEEEESSHHHH
T ss_pred eEEEEecCCCChhHHHHHHHHHHHHHHCCCC---------CCeeEeecC-CcchhHHHHHHHHHhcCCCcEEEEcCHHHH
Confidence 5777774433 45567788887664322 232333212 2332233333334444 7789998555544
Q ss_pred HHHHHHHhccCC------CceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 77 RNIIESMCQMFD------IPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 77 ~~~v~~i~~~~~------iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
..+...+...+ +.++++..++.. ....|-+-.+..+...+++..++++..
T Consensus 81 -~~~~~~l~~~g~~vP~di~vv~~~~~~~~---~~~~p~it~i~~~~~~~g~~a~~~l~~ 136 (160)
T PF13377_consen 81 -LGVLRALRELGIRVPQDISVVSFDDSPLL---EFFSPPITTIDQDPREMGREAVELLLD 136 (160)
T ss_dssp -HHHHHHHHHTTSCTTTTSEEEEESSSGHH---HCSSSTSEEEEE-HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCcccccccEEEecCcHHH---HHHcCCCceecCCHHHHHHHHHHHHHH
Confidence 44445555543 345666443322 223444555666677788877777654
No 446
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=22.47 E-value=2.2e+02 Score=31.11 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCCc----hhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCC
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHDN----LVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSS 193 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~ 193 (821)
.+.+.+.++.+|-+++.|+++..-. ...+.+.++.. |..+... .+.++ .++....++.+++.+
T Consensus 14 l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~----------g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 83 (374)
T cd08189 14 LAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGA----------GIEYAVYDGVPPDPTIENVEAGLALYRENG 83 (374)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhc----------CCeEEEeCCCCCCcCHHHHHHHHHHHHhcC
Confidence 3556777888888999999876432 23344444443 3444432 34333 445778888888899
Q ss_pred CcEEEEeCCh--hHHHHHHH
Q psy16206 194 ESHILLDCSM--DKTVTILK 211 (821)
Q Consensus 194 ~~~ivl~~~~--~~~~~~l~ 211 (821)
+|.||-.+.+ -++..++.
T Consensus 84 ~d~IIaiGGGS~~D~aK~ia 103 (374)
T cd08189 84 CDAILAVGGGSVIDCAKAIA 103 (374)
T ss_pred CCEEEEeCCccHHHHHHHHH
Confidence 9999977664 33444443
No 447
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=22.44 E-value=1.8e+02 Score=30.50 Aligned_cols=54 Identities=9% Similarity=0.138 Sum_probs=41.7
Q ss_pred EEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 41 IVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 41 ~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
...||=|.-...=.+++.+|..+ .+..|||...|+.+.-+..+|...+.|..-.
T Consensus 188 ~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~I 242 (298)
T PRK01045 188 PPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLI 242 (298)
T ss_pred CCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEE
Confidence 33775555455556677778777 8999999999999999999999998775544
No 448
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.27 E-value=5.1e+02 Score=27.38 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=48.2
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-C----eEEEE---cCCC
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-G----IAAIF---GPQS 73 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~----V~aii---Gp~~ 73 (821)
+||+|.+.+|.....-+. .++.+. +..++.+...-+++.++....-.+.+.++. + +++|| |..+
T Consensus 16 ~I~vITs~~gAa~~D~~~----~~~~r~----~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 16 RIAVITSPTGAAIQDFLR----TLKRRN----PIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEEEEeCCchHHHHHHHH----HHHHhC----CCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 799999999954443333 334343 344455544444544544444444444443 3 55555 4443
Q ss_pred c-----chHHHHHHHhccCCCceeee
Q psy16206 74 I-----ENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 74 s-----~~~~~v~~i~~~~~iP~is~ 94 (821)
- -.-..++.-.....+|+|+.
T Consensus 88 ~eDL~~FN~e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 88 IEDLWAFNDEEVARAIAASPIPVISA 113 (319)
T ss_pred hHHhcccChHHHHHHHHhCCCCEEEe
Confidence 2 23455666667788999986
No 449
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.27 E-value=2.3e+02 Score=28.52 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=23.7
Q ss_pred hHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 182 YRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 182 ~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
-.+.++.+.+.+++.|++..........++++.+.|.
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~i 80 (268)
T cd06289 44 QEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESGI 80 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhcCC
Confidence 4456677777788888776544333346677766665
No 450
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=21.98 E-value=6.1e+02 Score=26.83 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHhhc----CeEEEEcCCCcchHHHHHHHhccC---CCceeeeccCCCCCCCCCCCccEEEEecChhhH
Q psy16206 48 YDSLHTAKLMCNATSE----GIAAIFGPQSIENRNIIESMCQMF---DIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLI 120 (821)
Q Consensus 48 ~~~~~a~~~a~~li~~----~V~aiiGp~~s~~~~~v~~i~~~~---~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~ 120 (821)
.+...+.+.+.+++.+ .+.||+...+.. +..+...+.+. .+|++++...+.........+.+..+..+...+
T Consensus 205 ~~~~~a~~~~~~~l~~~~~~~~~ai~~~~d~~-A~gvl~al~~~Gl~~vpVvg~D~~~~~~~~~~~g~~~ttv~~~~~~~ 283 (330)
T PRK15395 205 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAM-AMGAVEALKAHNKSSIPVFGVDALPEALALVKSGAMAGTVLNDANNQ 283 (330)
T ss_pred cCHHHHHHHHHHHHhhCcCCCeeEEEECCchH-HHHHHHHHHhcCCCCCeEEeeCCCHHHHHHHHhCCceEEEecCHHHH
Confidence 3556677888888864 489999765543 33344444444 558888754432200001113355556666677
Q ss_pred HHHHHHHHHh
Q psy16206 121 SKGISVIIND 130 (821)
Q Consensus 121 ~~al~~~~~~ 130 (821)
++..+.++..
T Consensus 284 G~~a~~~l~~ 293 (330)
T PRK15395 284 AKATFDLAKN 293 (330)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 451
>KOG0025|consensus
Probab=21.98 E-value=5.7e+02 Score=26.60 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=63.2
Q ss_pred CCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHH
Q psy16206 106 NGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPL 185 (821)
Q Consensus 106 ~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~ 185 (821)
..+++++-.... ..++++.++++++|.+.+.|+-+.+ ..+.+.+.|+..+ . ..+++...+.. +.
T Consensus 160 ~GD~vIQNganS-~VG~~ViQlaka~GiktinvVRdR~-~ieel~~~Lk~lG-------A-~~ViTeeel~~------~~ 223 (354)
T KOG0025|consen 160 KGDSVIQNGANS-GVGQAVIQLAKALGIKTINVVRDRP-NIEELKKQLKSLG-------A-TEVITEEELRD------RK 223 (354)
T ss_pred CCCeeeecCccc-HHHHHHHHHHHHhCcceEEEeecCc-cHHHHHHHHHHcC-------C-ceEecHHHhcc------hh
Confidence 356777777664 5889999999999999999996654 4777788888887 2 12222222221 11
Q ss_pred HHHh--hcCCCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 186 LKEI--KNSSESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 186 l~~l--k~~~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
.++. ...+++.-+-+..+..+..+.+.+.+-|.
T Consensus 224 ~~k~~~~~~~prLalNcVGGksa~~iar~L~~Ggt 258 (354)
T KOG0025|consen 224 MKKFKGDNPRPRLALNCVGGKSATEIARYLERGGT 258 (354)
T ss_pred hhhhhccCCCceEEEeccCchhHHHHHHHHhcCce
Confidence 2222 23356666666667778888888776554
No 452
>PRK02929 L-arabinose isomerase; Provisional
Probab=21.70 E-value=1.2e+03 Score=26.56 Aligned_cols=118 Identities=9% Similarity=0.004 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh-c-CeEEEEcCCCc-chHHHHHHHhccCCCc
Q psy16206 14 VATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-E-GIAAIFGPQSI-ENRNIIESMCQMFDIP 90 (821)
Q Consensus 14 ~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-~-~V~aiiGp~~s-~~~~~v~~i~~~~~iP 90 (821)
++.-.+.=++.+|+.+. + .++++... --.++..+. .+++-.+ . ++++||-..++ +.+..+.+.+...++|
T Consensus 27 ~~~~~~~i~~~l~~~~~--~---~~~vv~~~-~v~~~~~i~-~~~~~~~~~~~~dgvi~~m~TFs~a~~~i~~~~~l~~P 99 (499)
T PRK02929 27 VAEHAEEIVDGLNASGK--L---PVKIVLKP-VLTTPDEIT-AVCREANYDDNCAGVITWMHTFSPAKMWIRGLSALQKP 99 (499)
T ss_pred HHHHHHHHHHHhcccCC--C---CeEEEEcC-ccCCHHHHH-HHHHHccccCCCcEEEEccCCCchHHHHHHHHHHcCCC
Confidence 33333444677787764 2 23444332 113444444 4444444 4 89999987777 6778889999999999
Q ss_pred eeeeccCC--CCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEE
Q psy16206 91 HVEAFWDP--NKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIY 140 (821)
Q Consensus 91 ~is~~~~~--~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~ 140 (821)
++-++.-+ ..........+ .+..-+- .=.+..+..++++|.+.-.|..
T Consensus 100 vL~~~~Q~~~e~p~~~id~d~-m~lnqs~-~G~~e~~~il~R~gi~~~~v~G 149 (499)
T PRK02929 100 LLHLHTQFNAEIPWDTIDMDF-MNLNQSA-HGDREFGFIGARLRKQRKVVVG 149 (499)
T ss_pred EEEEecCCCccCCCCCCCcch-hhhhhcc-cChHHHHHHHHHcCCCeeEEEE
Confidence 99886522 21000100121 1222111 1235667778888876433333
No 453
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=21.62 E-value=6.2e+02 Score=26.16 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=19.0
Q ss_pred CChhHHHHHHHHHhhc--CeEEEEcCCCcch
Q psy16206 48 YDSLHTAKLMCNATSE--GIAAIFGPQSIEN 76 (821)
Q Consensus 48 ~~~~~a~~~a~~li~~--~V~aiiGp~~s~~ 76 (821)
.+...+.+.+.+++.. .+.||+.+.+...
T Consensus 167 ~~~~~~~~~~~~~L~~~~~~~ai~~~~d~~a 197 (302)
T TIGR02637 167 DDAQKSYQEAQGLLKSYPNLKGIIAPTTVGI 197 (302)
T ss_pred chHHHHHHHHHHHHHhCCCccEEEeCCCchH
Confidence 4566667777777765 5778887654433
No 454
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=21.47 E-value=1.4e+02 Score=28.27 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=31.8
Q ss_pred HHHHHHhhc--CeEEEEcCCCcc---hHHHHHHHhccCCCceeeecc
Q psy16206 55 KLMCNATSE--GIAAIFGPQSIE---NRNIIESMCQMFDIPHVEAFW 96 (821)
Q Consensus 55 ~~a~~li~~--~V~aiiGp~~s~---~~~~v~~i~~~~~iP~is~~~ 96 (821)
+.+.+++.+ ++..++|..... ....+..+++.+++|+++...
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccc
Confidence 344455544 899999987754 677899999999999997643
No 455
>PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily []. It is often associated with a helix-turn-helix domain.
Probab=21.41 E-value=2.4e+02 Score=27.47 Aligned_cols=121 Identities=13% Similarity=0.168 Sum_probs=71.0
Q ss_pred ceEEEEEEecCCCcceeccccccchhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCceeeHHHHHHHHHHHc
Q psy16206 373 QWKVLGTWNTAFGLNHSRTVEQMDKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANEL 452 (821)
Q Consensus 373 ~~~~vG~w~~~~gl~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~G~~~dll~~ia~~l 452 (821)
.++.|-.+....|+-+...-|..-..+.+. .++.+++...+ ... | .-.+++.+.+..
T Consensus 60 ~~v~v~~~~r~~Gl~v~~~np~~i~~~~dL-~~~~~r~vnR~-----------------~GS----G-tR~l~d~~l~~~ 116 (193)
T PF12727_consen 60 EVVLVRLARREQGLIVRPGNPKGITSLEDL-ADPGLRFVNRQ-----------------PGS----G-TRILFDQLLAEE 116 (193)
T ss_pred cEEEEeeeEEeeeEEEeCCCCccCCCHHHh-ccCCcEEEECC-----------------CCC----H-HHHHHHHHHHHc
Confidence 356666666667775544322222344443 33455665552 111 2 347777777777
Q ss_pred CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCC
Q psy16206 453 NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAK 525 (821)
Q Consensus 453 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~ 525 (821)
|+.-+-+. .|. . +..+-..+..++..|++|+.++ .....++-.-++| .|+....+-++++++..
T Consensus 117 gi~~~~i~----gy~--~-~~~th~~vA~aVa~G~AD~G~g-~~~~A~~~~gL~F-vpl~~E~~dlv~~~~~~ 180 (193)
T PF12727_consen 117 GIDPEDIP----GYA--Q-EANTHLAVAAAVASGKADAGIG-IRAAAEEFYGLDF-VPLAEERYDLVIRREDL 180 (193)
T ss_pred CCChhhCC----Ccc--c-cccChHHHHHHHHcCCCCEEee-hHHHHHhhcCCCc-EEccccceEEEEEhhHc
Confidence 76542111 010 1 1335678899999999999975 3333333357777 47778889999998764
No 456
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=21.23 E-value=2.5e+02 Score=30.60 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=46.5
Q ss_pred HHHHHHHHhCCCCEEEEEEecCCc----hhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCCC
Q psy16206 122 KGISVIINDMDWDTFTIIYETHDN----LVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSSE 194 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~~ 194 (821)
+.+.+.++.++.+|+.|+++..-. ...+.+.+++. |+.+... .+.++ .++..+.+..++..++
T Consensus 12 ~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~----------gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~ 81 (375)
T cd08194 12 DETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKE----------GIESAIFDDVVSEPTDESVEEGVKLAKEGGC 81 (375)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHC----------CCeEEEECCCCCCcCHHHHHHHHHHHHhcCC
Confidence 455667777788999999965432 23344444433 4555433 34433 4457778888888999
Q ss_pred cEEEEeCCh
Q psy16206 195 SHILLDCSM 203 (821)
Q Consensus 195 ~~ivl~~~~ 203 (821)
|.||-.+.+
T Consensus 82 D~IIaiGGG 90 (375)
T cd08194 82 DVIIALGGG 90 (375)
T ss_pred CEEEEeCCc
Confidence 999987765
No 457
>PF12849 PBP_like_2: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily []. It is often associated with a helix-turn-helix domain.; PDB: 1QUL_A 1OIB_A 1A54_A 1IXH_A 1A40_A 1QUJ_A 1A55_A 1IXI_A 2ABH_A 1QUK_A ....
Probab=21.15 E-value=2.6e+02 Score=28.84 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=50.0
Q ss_pred eHHHHHHHHHHH-cCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhh---c--------ceee
Q psy16206 440 YSVDLIKMIANE-LNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERR---A--------AVDF 507 (821)
Q Consensus 440 ~~~dll~~ia~~-l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~---~--------~~~f 507 (821)
+--++.+.+.+. -+.++++... .-...+.+|.+|++|+++..-.++++-. . ...+
T Consensus 23 ~~~~~~~~~~~~~~~~~v~v~~~-------------gS~~g~~~l~~g~~di~~~sr~l~~~e~~~~~~~~~~~~~~~~~ 89 (281)
T PF12849_consen 23 IMEALAEAFERQYPGVKVTVESS-------------GSGAGIQALINGKVDIAISSRPLTAAEIASEGYNAKGQKWGGGL 89 (281)
T ss_dssp HHHHHHHHHHHHSTTBEEEEEEE--------------HHHHHHHHHTTSSSEEEESSHHHHHHHHHHTCCCCCHHHHCTE
T ss_pred HHHHHHHHHHHHCCCcEEEEEeC-------------CCHHHHHHHHhCCCEEEEeCCCCcHHHHhHhhhhhccccccccc
Confidence 334555556555 5788777643 3477899999999999988766665422 1 1233
Q ss_pred -cccceeeceEEEEEcCCC
Q psy16206 508 -TMPFMTLGISILYRKPAK 525 (821)
Q Consensus 508 -S~p~~~~~~~l~~~~~~~ 525 (821)
..|+..+.++++++++++
T Consensus 90 ~~~~va~d~i~iv~n~~np 108 (281)
T PF12849_consen 90 VQIPVARDAIVIVVNKDNP 108 (281)
T ss_dssp EEEEEEEEEEEEEEETTTT
T ss_pred EEEEEEEeeEEEEEcCCCc
Confidence 358999999999998755
No 458
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=21.11 E-value=1.2e+03 Score=26.33 Aligned_cols=78 Identities=12% Similarity=0.007 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh-cCeEEEEcCCCc-chHHHHHHHhccCCCce
Q psy16206 14 VATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-EGIAAIFGPQSI-ENRNIIESMCQMFDIPH 91 (821)
Q Consensus 14 ~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-~~V~aiiGp~~s-~~~~~v~~i~~~~~iP~ 91 (821)
++.-.+.=++.+|+++. + .++++...+ -.++..+.+.+.+.-. .+++.||-..++ +.+..+.+.+...++|+
T Consensus 21 ~~~~~~~i~~~l~~~~~--~---~~~v~~~~~-v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~~i~~~~~l~~Pv 94 (484)
T cd03557 21 VAAHSREIVDGLNASGK--L---PVKIVFKPV-LTTPDEILAVCREANADDNCAGVITWMHTFSPAKMWIAGLTALQKPL 94 (484)
T ss_pred HHHHHHHHHHHhcccCC--C---CeEEEEccc-cCCHHHHHHHHHHccccCCccEEEEccCCCchHHHHHHHHHHcCCCE
Confidence 33334444677787764 2 234443331 1456666555544433 378888877666 66678889999999999
Q ss_pred eeeccC
Q psy16206 92 VEAFWD 97 (821)
Q Consensus 92 is~~~~ 97 (821)
+-++.-
T Consensus 95 L~~~~q 100 (484)
T cd03557 95 LHLHTQ 100 (484)
T ss_pred EEEccC
Confidence 987543
No 459
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=20.92 E-value=6.9e+02 Score=26.14 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=52.2
Q ss_pred CChhHHHHHHHHHhhcCeEEEE--cC---CCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChh---h
Q psy16206 48 YDSLHTAKLMCNATSEGIAAIF--GP---QSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESH---L 119 (821)
Q Consensus 48 ~~~~~a~~~a~~li~~~V~aii--Gp---~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~---~ 119 (821)
+|+.-|.+.+..+.++|+.+.. -+ ..-.+..++.-+....++|+|..+.... ++.+.+.++.. .
T Consensus 96 gd~eLA~~i~~~~~~~Gi~~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l--------~~~~~~~~~~~~~~~ 167 (294)
T cd07372 96 VDVELAEACCEEGRKAGLVTKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNT--------PYYLNTKEGLGEMDV 167 (294)
T ss_pred CCHHHHHHHHHHHHHCCCCeeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCcc--------cccccccCCHHHHHH
Confidence 5666666666556666877653 22 2224445555555557788887653211 11111123333 3
Q ss_pred HHHHHHHHHHhCCCCEEEEEEecC
Q psy16206 120 ISKGISVIINDMDWDTFTIIYETH 143 (821)
Q Consensus 120 ~~~al~~~~~~~~w~~v~ii~~~~ 143 (821)
.++++.+.++..+ +||++|.+-+
T Consensus 168 lG~ai~~al~~~~-~RV~vIaSG~ 190 (294)
T cd07372 168 LGKATREAIRKTG-RRAVLLASNT 190 (294)
T ss_pred HHHHHHHHHHhcC-CeEEEEEeCc
Confidence 7899999999987 9999999877
No 460
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.92 E-value=3e+02 Score=27.77 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=31.6
Q ss_pred CCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh-hHHHHHHHHHHHccc
Q psy16206 165 PGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM-DKTVTILKQAKEVHL 218 (821)
Q Consensus 165 ~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~-~~~~~~l~~a~~~g~ 218 (821)
..|..+.......+.......++.+.+.+++.+++.... ......++++.+.|+
T Consensus 27 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~i 81 (267)
T cd06322 27 KQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKAGI 81 (267)
T ss_pred hcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCC
Confidence 345555443222222334566777777889998885543 333556777777665
No 461
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=20.81 E-value=1.8e+02 Score=28.35 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=33.8
Q ss_pred CCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCC----hHHHHHHhhcCCCcEEEEeCCh
Q psy16206 133 WDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDD----YRPLLKEIKNSSESHILLDCSM 203 (821)
Q Consensus 133 w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d----~~~~l~~lk~~~~~~ivl~~~~ 203 (821)
-++|+++..|..-..+.+++-.... ..| +.+..... ..| ....+++.+..+.|+|+++..+
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~-------~l~--vp~~~~~~-~~~~~~~~~~~l~~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAE-------ILG--VPFYVART-ESDPAEIAREALEKFRKKGYDLVLIDTAG 93 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHH-------HHT--EEEEESST-TSCHHHHHHHHHHHHHHTTSSEEEEEE-S
T ss_pred cccceeecCCCCCccHHHHHHHHHH-------Hhc--cccchhhc-chhhHHHHHHHHHHHhhcCCCEEEEecCC
Confidence 6889999988764444444433332 112 44333322 122 3445666777789999999875
No 462
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=20.81 E-value=94 Score=29.81 Aligned_cols=29 Identities=17% Similarity=0.555 Sum_probs=25.6
Q ss_pred EEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 66 AAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 66 ~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
..|+||.++.-..-...+++.+++|||+.
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~hlst 31 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLPHLDT 31 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEcH
Confidence 57899999988888889999999999984
No 463
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=20.79 E-value=4.2e+02 Score=28.31 Aligned_cols=85 Identities=11% Similarity=0.139 Sum_probs=61.4
Q ss_pred HHHHHHHhhc-CeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCcc-EEEEecChhhHHHHHHHHHHhC
Q psy16206 54 AKLMCNATSE-GIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVH-GVNVYPESHLISKGISVIINDM 131 (821)
Q Consensus 54 ~~~a~~li~~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~-~~r~~p~~~~~~~al~~~~~~~ 131 (821)
.+.+.+.+++ |+..++-|...+....++++=...++|.|--.-.|- .++..-++ +.-+ ......+.+++.++..
T Consensus 137 ~e~~~~~l~~~g~~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL--~NPa~~~~qliGV--~~p~~~~~~A~~l~~L 212 (338)
T COG0547 137 PEQAARALEETGIGFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPL--LNPARAKLQLIGV--YHPELVELLAEALRLL 212 (338)
T ss_pred HHHHHHHHHhcCeEEEEccccCHHHHHHHHHHHHcCCCchHHhhccc--cCCCCCCceEEEE--eCHHHHHHHHHHHHHh
Confidence 4556667777 999999999999999999999999999764322222 22322222 2222 2223679999999999
Q ss_pred CCCEEEEEEec
Q psy16206 132 DWDTFTIIYET 142 (821)
Q Consensus 132 ~w~~v~ii~~~ 142 (821)
|-+++.+++-.
T Consensus 213 G~~ralvV~G~ 223 (338)
T COG0547 213 GVERALVVHGL 223 (338)
T ss_pred CcceEEEEECC
Confidence 99999999986
No 464
>PRK09875 putative hydrolase; Provisional
Probab=20.69 E-value=9.6e+02 Score=25.07 Aligned_cols=156 Identities=8% Similarity=0.008 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHHhhcCeEEEEcCCC---cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHH
Q psy16206 49 DSLHTAKLMCNATSEGIAAIFGPQS---IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGIS 125 (821)
Q Consensus 49 ~~~~a~~~a~~li~~~V~aiiGp~~---s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~ 125 (821)
+...+++...++...|+..|+=+++ .-....++.++++.++.+|..+.- .. ...+|-.++. -+...+++.+.
T Consensus 32 ~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~-y~---~~~~p~~~~~-~~~e~la~~~i 106 (292)
T PRK09875 32 QYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGY-YQ---DAFFPEHVAT-RSVQELAQEMV 106 (292)
T ss_pred cHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcC-CC---CccCCHHHhc-CCHHHHHHHHH
Confidence 5666777777877779999995443 377888999999999999975321 11 1123322221 12233444444
Q ss_pred HHHHh-CCCC--EEEEE---EecCC-----chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCC
Q psy16206 126 VIIND-MDWD--TFTII---YETHD-----NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSE 194 (821)
Q Consensus 126 ~~~~~-~~w~--~v~ii---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~ 194 (821)
+-+.. .+-+ |-++| ..+.. ....++.+..... ..|..|.... +. .+.-..+++-+++.+.
T Consensus 107 ~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~-------~TG~pi~~Ht-~~-~~~g~e~l~il~e~Gv 177 (292)
T PRK09875 107 DEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHN-------QTGRPISTHT-SF-STMGLEQLALLQAHGV 177 (292)
T ss_pred HHHHHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHH-------HHCCcEEEcC-CC-ccchHHHHHHHHHcCc
Confidence 44433 2222 33555 22221 2333344333333 4466665552 22 2344456777777655
Q ss_pred ---cEEEEeCChhHHHHHHHHHHHccc
Q psy16206 195 ---SHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 195 ---~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
++++-++....-...++++.+.|.
T Consensus 178 d~~rvvi~H~d~~~d~~~~~~l~~~G~ 204 (292)
T PRK09875 178 DLSRVTVGHCDLKDNLDNILKMIDLGA 204 (292)
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHcCC
Confidence 566667754444455556666663
No 465
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.63 E-value=5.9e+02 Score=22.40 Aligned_cols=62 Identities=10% Similarity=0.015 Sum_probs=40.2
Q ss_pred chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh----hHHHHHHHHHHHcccc
Q psy16206 145 NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM----DKTVTILKQAKEVHLM 219 (821)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~----~~~~~~l~~a~~~g~~ 219 (821)
+...+..+++..+ +.+..-. . .....+.+..+++.++++|++++.. ..+..+++++++.+..
T Consensus 15 G~~~~~~~l~~~G----------~~vi~lG--~-~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~ 80 (122)
T cd02071 15 GAKVIARALRDAG----------FEVIYTG--L-RQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAG 80 (122)
T ss_pred HHHHHHHHHHHCC----------CEEEECC--C-CCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCC
Confidence 5666666766665 4554322 2 2445577788888899999988764 3456667777777653
No 466
>PRK09986 DNA-binding transcriptional activator XapR; Provisional
Probab=20.59 E-value=2.9e+02 Score=28.55 Aligned_cols=71 Identities=8% Similarity=0.046 Sum_probs=45.6
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-.+++..+.++. ++++++... +-++++.+|.+|++|+++.... .+.....+. +.|+.....++
T Consensus 111 ~l~~~l~~f~~~~p~i~l~i~~~-------------~~~~~~~~l~~g~~D~~i~~~~-~~~~~~~l~-~~~l~~~~~~~ 175 (294)
T PRK09986 111 RLRPAMRHFLKENPNVEWLLREL-------------SPSMQMAALERRELDAGIWRMA-DLEPNPGFT-SRRLHESAFAV 175 (294)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeC-------------CHHHHHHHHHcCCCCEEEecCC-ccCCCCCeE-EEEeecccEEE
Confidence 3456677776664 456666522 3467899999999999874211 112233344 36788889999
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 176 v~~~~~~ 182 (294)
T PRK09986 176 AVPEEHP 182 (294)
T ss_pred EEcCCCC
Confidence 9887754
No 467
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=20.54 E-value=1.7e+02 Score=28.94 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=31.8
Q ss_pred CChhHHHHHHHHHhhcC---eEEEEc-CCCcchHHHHHHHhccCCCceeee
Q psy16206 48 YDSLHTAKLMCNATSEG---IAAIFG-PQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 48 ~~~~~a~~~a~~li~~~---V~aiiG-p~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
||+..|.-..++|+++| ...||| |.+=..+..........++|+|+.
T Consensus 139 GNAPTAL~~l~~li~~g~~~PalVIG~PVGFV~AaEsKe~L~~~~iP~It~ 189 (214)
T PRK08286 139 GNAPTALFRLLEMVEHGQLQVDAVVGVPVGFVGAAESKEALTESDLPAIAA 189 (214)
T ss_pred eCcHHHHHHHHHHHHcCCCCCcEEEEeCCccccHHHHHHHHHhCCCCEEEE
Confidence 67778888888888763 677776 444444444445555678888876
No 468
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.39 E-value=5.7e+02 Score=28.33 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=50.7
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-C-eEEEE---cCCCc--
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-G-IAAIF---GPQSI-- 74 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~-V~aii---Gp~~s-- 74 (821)
+||+|.+.+|.....-+..+- .+ -|..++-+...-+++.++..-.-.+.+.+++ + ++++| |..+-
T Consensus 137 ~IGVITS~tgAairDIl~~~~----rR----~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiED 208 (440)
T COG1570 137 KIGVITSPTGAALRDILHTLS----RR----FPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIED 208 (440)
T ss_pred eEEEEcCCchHHHHHHHHHHH----hh----CCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHH
Confidence 699999999965555444433 33 2343444444444555555555556666666 4 88887 33322
Q ss_pred ---chHHHHHHHhccCCCceeee
Q psy16206 75 ---ENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 75 ---~~~~~v~~i~~~~~iP~is~ 94 (821)
-.=+.|+.-.-...+|+||-
T Consensus 209 LW~FNdE~vaRAi~~s~iPvISA 231 (440)
T COG1570 209 LWAFNDEIVARAIAASRIPVISA 231 (440)
T ss_pred HhccChHHHHHHHHhCCCCeEee
Confidence 12245556667788999986
No 469
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=20.36 E-value=1.3e+02 Score=31.21 Aligned_cols=53 Identities=8% Similarity=0.063 Sum_probs=40.6
Q ss_pred EEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 42 VQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 42 ~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
+.||=|.-...=.+++.+|..+ .+..|+|...|+.+.-+..+|...+.|..-.
T Consensus 188 v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~I 241 (281)
T PRK12360 188 FFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHI 241 (281)
T ss_pred cCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEE
Confidence 4675555555556677778776 8888999999999999999999988765433
No 470
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=20.31 E-value=1e+02 Score=29.45 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=26.4
Q ss_pred eEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 65 IAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 65 V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
|..|+||.+|.=......+++.++.++|+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 568999999988888888999999999986
No 471
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=20.19 E-value=4.7e+02 Score=29.21 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=48.5
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEE---cCCCcc--
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIF---GPQSIE-- 75 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aii---Gp~~s~-- 75 (821)
+||+|.+.+|.....-. ..++.+. +..++.+...-+++..+....-.+.+.++. ++++|| |..+-+
T Consensus 137 ~I~viTs~~gAa~~D~~----~~~~~r~----p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL 208 (438)
T PRK00286 137 RIGVITSPTGAAIRDIL----TVLRRRF----PLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDL 208 (438)
T ss_pred EEEEEeCCccHHHHHHH----HHHHhcC----CCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHh
Confidence 79999999995443332 3444442 344555555544544454444444444554 445555 444322
Q ss_pred ---hHHHHHHHhccCCCceeee
Q psy16206 76 ---NRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 76 ---~~~~v~~i~~~~~iP~is~ 94 (821)
.-..++.......+|+||.
T Consensus 209 ~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 209 WAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred hccCcHHHHHHHHcCCCCEEEe
Confidence 2355666666779999986
Done!