Query psy16206
Match_columns 821
No_of_seqs 390 out of 3206
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 23:32:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 8.8E-77 3E-81 721.2 52.0 631 1-820 3-651 (823)
2 3o21_A Glutamate receptor 3; p 100.0 3.2E-49 1.1E-53 434.9 36.2 366 1-389 6-380 (389)
3 3om0_A Glutamate receptor, ion 100.0 8E-49 2.7E-53 433.5 37.4 371 1-391 5-383 (393)
4 3h6g_A Glutamate receptor, ion 100.0 1.4E-47 4.7E-52 424.0 38.9 375 1-392 5-386 (395)
5 4gpa_A Glutamate receptor 4; P 100.0 1.2E-47 4E-52 423.9 37.8 368 1-392 6-381 (389)
6 3hsy_A Glutamate receptor 2; l 100.0 7.3E-48 2.5E-52 422.7 35.8 361 1-389 3-374 (376)
7 3saj_A Glutamate receptor 1; r 100.0 5.4E-46 1.8E-50 409.2 28.1 362 1-391 11-379 (384)
8 3qek_A NMDA glutamate receptor 100.0 1.3E-41 4.6E-46 374.4 36.8 338 1-389 6-375 (384)
9 4f11_A Gamma-aminobutyric acid 100.0 1.8E-41 6.1E-46 379.8 31.6 362 1-388 15-410 (433)
10 1dp4_A Atrial natriuretic pept 100.0 1.6E-40 5.5E-45 372.4 31.5 359 1-385 3-399 (435)
11 1jdp_A NPR-C, atrial natriuret 100.0 9.5E-40 3.3E-44 366.6 35.0 358 1-385 10-397 (441)
12 3qel_B Glutamate [NMDA] recept 100.0 2.9E-38 9.9E-43 343.0 29.8 339 1-391 5-359 (364)
13 2e4u_A Metabotropic glutamate 100.0 4.3E-37 1.5E-41 354.2 33.8 369 1-389 15-469 (555)
14 3sm9_A Mglur3, metabotropic gl 100.0 1.3E-36 4.3E-41 342.7 33.8 369 1-389 14-468 (479)
15 3i45_A Twin-arginine transloca 100.0 4E-36 1.4E-40 331.2 35.1 348 1-391 6-368 (387)
16 3mq4_A Mglur7, metabotropic gl 100.0 5.6E-37 1.9E-41 346.5 27.5 372 1-389 17-473 (481)
17 4f06_A Extracellular ligand-bi 100.0 3.3E-35 1.1E-39 321.6 33.6 328 1-371 6-347 (371)
18 3ks9_A Mglur1, metabotropic gl 100.0 4.3E-35 1.5E-39 331.7 34.4 360 13-389 50-481 (496)
19 4gnr_A ABC transporter substra 100.0 1.4E-34 4.6E-39 314.7 33.3 332 1-381 8-352 (353)
20 3h5l_A Putative branched-chain 100.0 4.8E-35 1.7E-39 326.1 27.4 347 1-382 15-396 (419)
21 3n0x_A Possible substrate bind 100.0 4E-34 1.4E-38 313.5 31.2 326 1-373 5-348 (374)
22 3td9_A Branched chain amino ac 100.0 7.1E-34 2.4E-38 310.7 31.5 334 1-384 17-364 (366)
23 3ipc_A ABC transporter, substr 100.0 5.6E-34 1.9E-38 310.3 29.2 335 1-384 3-353 (356)
24 3hut_A Putative branched-chain 100.0 5.6E-33 1.9E-37 302.7 31.9 338 1-384 5-355 (358)
25 3lkb_A Probable branched-chain 100.0 8.4E-34 2.9E-38 313.2 25.5 350 1-391 8-383 (392)
26 3i09_A Periplasmic branched-ch 100.0 9.4E-33 3.2E-37 302.9 31.2 326 1-373 5-342 (375)
27 4eyg_A Twin-arginine transloca 100.0 1.7E-32 5.9E-37 300.0 32.8 334 1-378 7-353 (368)
28 1usg_A Leucine-specific bindin 100.0 1.1E-32 3.9E-37 298.6 29.9 332 1-377 3-345 (346)
29 3eaf_A ABC transporter, substr 100.0 6E-33 2E-37 306.2 26.8 343 1-389 5-378 (391)
30 4evq_A Putative ABC transporte 100.0 2.8E-32 9.6E-37 299.1 31.2 337 1-383 17-364 (375)
31 3n0w_A ABC branched chain amin 100.0 1.8E-32 6.3E-37 300.9 29.6 324 1-373 7-346 (379)
32 3lop_A Substrate binding perip 100.0 2.5E-32 8.6E-37 298.1 28.7 331 1-375 6-354 (364)
33 1pea_A Amidase operon; gene re 100.0 2.2E-29 7.5E-34 277.0 28.9 335 1-380 8-357 (385)
34 3sg0_A Extracellular ligand-bi 100.0 5.1E-30 1.7E-34 282.2 19.1 332 1-377 28-385 (386)
35 3snr_A Extracellular ligand-bi 100.0 2.1E-29 7E-34 274.8 22.1 332 1-377 8-361 (362)
36 3g3k_A Glutamate receptor, ion 99.9 1.4E-26 4.9E-31 239.6 5.0 245 405-682 3-254 (259)
37 2h4a_A YRAM (HI1655); perplasm 99.9 1.3E-23 4.6E-28 222.6 24.8 301 2-378 2-318 (325)
38 3ckm_A YRAM (HI1655), LPOA; pe 99.9 1.2E-23 4E-28 225.5 24.6 308 1-382 3-324 (327)
39 1yae_A Glutamate receptor, ion 99.9 5.4E-26 1.9E-30 242.1 5.1 269 397-682 4-288 (312)
40 4h5g_A Amino acid ABC superfam 99.9 1.6E-25 5.5E-30 229.3 6.2 228 397-681 3-237 (243)
41 1pb7_A N-methyl-D-aspartate re 99.9 2.4E-25 8.3E-30 234.4 1.3 240 405-682 40-287 (292)
42 4gvo_A LMO2349 protein; struct 99.9 2E-24 6.9E-29 221.1 7.6 223 403-682 6-236 (243)
43 1mqi_A Glutamate receptor 2; G 99.9 7.3E-24 2.5E-28 219.7 6.1 246 406-684 4-259 (263)
44 2v3u_A Glutamate receptor delt 99.9 6.5E-23 2.2E-27 212.7 10.4 250 415-684 2-261 (265)
45 2rc8_A Glutamate [NMDA] recept 99.9 5.7E-23 1.9E-27 216.6 8.0 211 438-682 68-289 (294)
46 3kbr_A Cyclohexadienyl dehydra 99.9 3.4E-23 1.1E-27 211.2 5.5 229 396-681 5-237 (239)
47 3i6v_A Periplasmic His/Glu/Gln 99.9 1.5E-22 5.1E-27 205.6 7.2 211 405-683 4-219 (232)
48 2a5s_A N-methyl-D-aspartate re 99.9 9.7E-23 3.3E-27 213.7 5.9 212 437-682 56-280 (284)
49 3kzg_A Arginine 3RD transport 99.9 4.2E-22 1.4E-26 202.9 9.5 217 406-683 3-232 (237)
50 3k4u_A Binding component of AB 99.9 4E-22 1.4E-26 204.2 8.6 220 404-682 3-229 (245)
51 3mpk_A Virulence sensor protei 99.8 3E-21 1E-25 200.4 9.5 226 396-682 22-253 (267)
52 3del_B Arginine binding protei 99.8 3.4E-21 1.1E-25 196.8 9.7 220 401-683 6-234 (242)
53 3hv1_A Polar amino acid ABC up 99.8 1.9E-21 6.5E-26 202.1 7.2 225 397-682 12-249 (268)
54 3tql_A Arginine-binding protei 99.8 4E-21 1.4E-25 193.8 8.3 212 417-680 3-227 (227)
55 4f3p_A Glutamine-binding perip 99.8 4.7E-21 1.6E-25 196.7 7.0 219 403-682 21-243 (249)
56 3h7m_A Sensor protein; histidi 99.8 9.9E-21 3.4E-25 192.0 8.3 220 403-683 8-232 (234)
57 2y7i_A STM4351; arginine-bindi 99.8 1.5E-20 5.2E-25 189.9 8.5 216 404-681 4-228 (229)
58 1lst_A Lysine, arginine, ornit 99.8 3E-20 1E-24 189.2 10.1 218 405-682 3-233 (239)
59 1ii5_A SLR1257 protein; membra 99.8 1.4E-20 4.7E-25 190.8 6.3 216 405-682 3-227 (233)
60 2iee_A ORF2, probable ABC tran 99.8 1.3E-20 4.5E-25 196.1 6.2 224 397-681 12-246 (271)
61 4eq9_A ABC transporter substra 99.8 2.3E-20 7.9E-25 190.9 7.6 218 404-682 6-236 (246)
62 1wdn_A GLNBP, glutamine bindin 99.8 4.7E-20 1.6E-24 185.8 7.2 216 406-682 3-223 (226)
63 2q88_A EHUB, putative ABC tran 99.8 7.4E-20 2.5E-24 188.6 8.9 224 397-680 4-239 (257)
64 4dz1_A DALS D-alanine transpor 99.8 1.1E-19 3.7E-24 187.8 9.1 219 404-682 27-254 (259)
65 2pyy_A Ionotropic glutamate re 99.8 1E-19 3.4E-24 183.6 5.6 214 406-682 3-223 (228)
66 1xt8_A Putative amino-acid tra 99.8 1.8E-19 6.2E-24 189.7 7.0 227 398-685 36-269 (292)
67 4i62_A Amino acid ABC transpor 99.8 1.5E-19 5.3E-24 187.4 5.3 223 400-681 33-264 (269)
68 2yln_A Putative ABC transporte 99.8 5E-19 1.7E-23 185.3 8.3 223 397-682 48-278 (283)
69 2vha_A Periplasmic binding tra 99.8 3.2E-19 1.1E-23 187.2 6.6 225 397-682 8-249 (287)
70 2yjp_A Putative ABC transporte 99.8 2.7E-19 9.3E-24 188.2 5.3 227 398-685 47-280 (291)
71 2pvu_A ARTJ; basic amino acid 99.8 6.1E-19 2.1E-23 183.5 7.7 223 398-682 34-263 (272)
72 3qax_A Probable ABC transporte 99.8 1.4E-18 4.8E-23 180.1 10.1 219 404-684 29-256 (268)
73 2v25_A Major cell-binding fact 99.6 5.4E-17 1.8E-21 167.1 3.7 222 398-680 30-258 (259)
74 3n5l_A Binding protein compone 98.7 5.2E-09 1.8E-13 110.0 4.1 207 417-679 5-241 (310)
75 2ozz_A Hypothetical protein YH 98.6 6.4E-08 2.2E-12 94.7 9.1 166 437-662 29-211 (231)
76 3p7i_A PHND, subunit of alkylp 98.6 1.6E-08 5.3E-13 106.7 2.4 213 406-678 14-249 (321)
77 3rot_A ABC sugar transporter, 98.0 0.0002 6.7E-09 74.4 18.9 198 1-220 4-214 (297)
78 3ksm_A ABC-type sugar transpor 97.9 0.00025 8.6E-09 72.5 17.8 194 1-218 1-211 (276)
79 2h3h_A Sugar ABC transporter, 97.9 0.00065 2.2E-08 71.0 20.5 194 1-219 2-207 (313)
80 3gbv_A Putative LACI-family tr 97.7 0.0026 8.8E-08 65.9 21.8 193 2-218 10-223 (304)
81 1tjy_A Sugar transport protein 97.7 0.002 6.8E-08 67.4 20.8 192 2-219 5-213 (316)
82 2qh8_A Uncharacterized protein 97.7 0.0014 4.8E-08 68.1 18.7 196 2-218 10-217 (302)
83 3l6u_A ABC-type sugar transpor 97.6 0.0026 9.1E-08 65.5 20.0 192 2-219 10-220 (293)
84 2iks_A DNA-binding transcripti 97.6 0.0033 1.1E-07 64.9 20.7 193 2-221 22-224 (293)
85 3o74_A Fructose transport syst 97.6 0.0027 9.3E-08 64.5 19.8 190 2-218 4-204 (272)
86 3c3k_A Alanine racemase; struc 97.6 0.0025 8.6E-08 65.5 19.2 188 2-221 10-211 (285)
87 2fn9_A Ribose ABC transporter, 97.6 0.0032 1.1E-07 64.7 19.6 191 2-218 4-215 (290)
88 3d02_A Putative LACI-type tran 97.6 0.0029 9.9E-08 65.6 19.3 192 2-219 6-214 (303)
89 3g1w_A Sugar ABC transporter; 97.6 0.0039 1.3E-07 64.6 20.0 197 2-226 6-218 (305)
90 3brq_A HTH-type transcriptiona 97.6 0.0015 5E-08 67.5 16.4 189 2-221 21-227 (296)
91 2vk2_A YTFQ, ABC transporter p 97.6 0.0041 1.4E-07 64.6 20.0 198 1-221 3-218 (306)
92 3egc_A Putative ribose operon 97.5 0.0039 1.3E-07 64.2 19.3 192 2-221 10-213 (291)
93 3brs_A Periplasmic binding pro 97.5 0.0046 1.6E-07 63.5 19.7 194 2-219 7-215 (289)
94 2qu7_A Putative transcriptiona 97.5 0.0012 4E-08 68.1 15.0 187 2-221 10-214 (288)
95 1dbq_A Purine repressor; trans 97.5 0.0025 8.6E-08 65.5 17.5 190 2-221 9-214 (289)
96 2x7x_A Sensor protein; transfe 97.5 0.0072 2.5E-07 63.4 20.7 193 2-219 8-213 (325)
97 3lkv_A Uncharacterized conserv 97.5 0.014 4.7E-07 60.5 22.4 184 1-204 9-204 (302)
98 2rjo_A Twin-arginine transloca 97.5 0.0048 1.7E-07 64.9 19.1 197 2-219 7-222 (332)
99 2ioy_A Periplasmic sugar-bindi 97.4 0.01 3.5E-07 60.7 20.7 191 2-218 3-207 (283)
100 3dbi_A Sugar-binding transcrip 97.4 0.0043 1.5E-07 65.5 18.0 191 2-222 63-270 (338)
101 3lft_A Uncharacterized protein 97.4 0.012 3.9E-07 60.8 20.8 195 2-218 4-210 (295)
102 2fep_A Catabolite control prot 97.4 0.0065 2.2E-07 62.5 18.8 189 2-221 18-222 (289)
103 3d8u_A PURR transcriptional re 97.4 0.0078 2.7E-07 61.2 19.0 189 2-221 5-208 (275)
104 3o1i_D Periplasmic protein TOR 97.4 0.002 6.8E-08 66.8 14.6 192 2-219 7-218 (304)
105 3l49_A ABC sugar (ribose) tran 97.4 0.005 1.7E-07 63.3 17.4 188 2-219 7-216 (291)
106 2fvy_A D-galactose-binding per 97.4 0.012 4.1E-07 61.0 20.4 193 2-217 4-226 (309)
107 3h75_A Periplasmic sugar-bindi 97.3 0.015 5.1E-07 61.6 20.9 200 1-221 4-232 (350)
108 3k4h_A Putative transcriptiona 97.3 0.0074 2.5E-07 62.0 17.4 190 2-221 10-219 (292)
109 2o20_A Catabolite control prot 97.3 0.008 2.7E-07 63.2 18.0 190 2-222 65-267 (332)
110 3jy6_A Transcriptional regulat 97.2 0.019 6.5E-07 58.4 20.0 199 2-226 9-213 (276)
111 3m9w_A D-xylose-binding peripl 97.2 0.0059 2E-07 63.6 15.8 193 2-219 4-213 (313)
112 3tb6_A Arabinose metabolism tr 97.2 0.0085 2.9E-07 61.7 16.8 196 2-222 17-229 (298)
113 3kke_A LACI family transcripti 97.2 0.009 3.1E-07 61.9 17.0 187 2-221 17-224 (303)
114 2h0a_A TTHA0807, transcription 97.2 0.0044 1.5E-07 63.1 14.4 190 2-221 1-207 (276)
115 2rgy_A Transcriptional regulat 97.2 0.0065 2.2E-07 62.5 15.7 189 2-221 10-216 (290)
116 3clk_A Transcription regulator 97.2 0.0037 1.3E-07 64.3 13.8 188 2-221 10-212 (290)
117 2x26_A Periplasmic aliphatic s 97.2 0.0019 6.4E-08 67.3 11.5 172 447-663 24-211 (308)
118 3kg2_A Glutamate receptor 2; I 97.1 4.8E-05 1.7E-09 91.5 -1.0 105 576-682 654-760 (823)
119 3e61_A Putative transcriptiona 97.1 0.011 3.7E-07 60.2 16.5 188 2-222 10-205 (277)
120 1qpz_A PURA, protein (purine n 97.1 0.02 6.8E-07 60.4 18.7 191 2-221 60-265 (340)
121 3hs3_A Ribose operon repressor 97.0 0.012 4E-07 60.1 16.1 182 2-222 12-206 (277)
122 8abp_A L-arabinose-binding pro 97.0 0.018 6.2E-07 59.5 17.8 199 1-220 3-223 (306)
123 3hcw_A Maltose operon transcri 97.0 0.014 4.8E-07 60.1 16.6 165 40-222 45-220 (295)
124 3k9c_A Transcriptional regulat 97.0 0.03 1E-06 57.4 18.6 188 2-222 14-213 (289)
125 3gv0_A Transcriptional regulat 97.0 0.027 9.1E-07 57.7 18.2 193 2-221 10-215 (288)
126 3ctp_A Periplasmic binding pro 97.0 0.011 3.9E-07 62.0 15.6 184 2-221 62-258 (330)
127 2hsg_A Glucose-resistance amyl 96.9 0.011 3.9E-07 62.0 15.3 189 2-221 62-266 (332)
128 2dri_A D-ribose-binding protei 96.9 0.051 1.8E-06 55.0 19.7 188 2-218 3-206 (271)
129 3bbl_A Regulatory protein of L 96.9 0.0096 3.3E-07 61.1 14.0 189 2-221 6-215 (287)
130 1yae_A Glutamate receptor, ion 96.9 0.00043 1.5E-08 72.4 3.7 132 681-819 39-181 (312)
131 1jx6_A LUXP protein; protein-l 96.9 0.047 1.6E-06 57.5 19.8 196 2-218 45-258 (342)
132 3gyb_A Transcriptional regulat 96.9 0.0036 1.2E-07 64.0 10.5 185 2-221 7-203 (280)
133 3qsl_A Putative exported prote 96.9 0.0057 2E-07 64.6 12.4 140 446-629 56-205 (346)
134 3qk7_A Transcriptional regulat 96.8 0.032 1.1E-06 57.4 17.3 192 2-222 8-215 (294)
135 3miz_A Putative transcriptiona 96.7 0.015 5.1E-07 60.1 13.9 192 2-221 15-224 (301)
136 3bil_A Probable LACI-family tr 96.7 0.033 1.1E-06 58.9 16.8 191 2-221 68-268 (348)
137 3kjx_A Transcriptional regulat 96.7 0.038 1.3E-06 58.2 17.3 190 2-222 70-275 (344)
138 3e3m_A Transcriptional regulat 96.7 0.088 3E-06 55.7 20.0 190 2-222 72-278 (355)
139 3uug_A Multiple sugar-binding 96.7 0.025 8.4E-07 59.3 15.4 195 2-221 5-231 (330)
140 3h5o_A Transcriptional regulat 96.7 0.055 1.9E-06 56.9 18.1 191 2-222 64-267 (339)
141 3g85_A Transcriptional regulat 96.7 0.017 5.9E-07 59.1 13.7 187 2-221 13-215 (289)
142 1gud_A ALBP, D-allose-binding 96.6 0.1 3.5E-06 53.3 19.2 196 2-219 3-218 (288)
143 1byk_A Protein (trehalose oper 96.6 0.044 1.5E-06 54.8 16.0 178 2-218 4-196 (255)
144 3huu_A Transcription regulator 96.5 0.026 8.9E-07 58.4 13.7 187 2-221 24-229 (305)
145 3cs3_A Sugar-binding transcrip 96.4 0.059 2E-06 54.7 15.7 140 64-222 57-205 (277)
146 3jvd_A Transcriptional regulat 96.3 0.066 2.3E-06 56.1 16.0 181 2-221 66-258 (333)
147 3ksx_A Nitrate transport prote 96.3 0.02 6.7E-07 60.0 11.8 138 447-628 50-195 (324)
148 1jye_A Lactose operon represso 96.1 0.12 4.1E-06 54.5 16.8 189 2-222 63-266 (349)
149 3ix1_A N-formyl-4-amino-5-amin 96.1 0.021 7.1E-07 59.0 10.4 77 437-525 16-97 (302)
150 3g3k_A Glutamate receptor, ion 96.1 0.0037 1.3E-07 63.0 4.3 117 681-819 30-147 (259)
151 2fqx_A Membrane lipoprotein TM 96.0 0.63 2.2E-05 48.2 21.2 195 1-227 5-220 (318)
152 3uif_A Sulfonate ABC transport 96.0 0.02 6.8E-07 60.6 9.7 72 444-525 35-110 (348)
153 3un6_A Hypothetical protein sa 96.0 0.013 4.3E-07 62.0 8.0 188 448-681 76-283 (341)
154 4fe7_A Xylose operon regulator 95.9 0.34 1.2E-05 52.3 19.4 191 2-222 27-231 (412)
155 3s99_A Basic membrane lipoprot 95.5 0.52 1.8E-05 49.5 18.2 187 1-218 27-230 (356)
156 2f5x_A BUGD; periplasmic bindi 95.2 0.013 4.4E-07 60.7 4.6 200 439-679 33-275 (312)
157 3qi7_A Putative transcriptiona 95.2 2.2 7.4E-05 44.5 21.3 205 2-220 14-251 (371)
158 4ddd_A Immunogenic protein; ss 95.0 0.12 4.1E-06 53.9 11.4 78 436-525 43-137 (327)
159 2x7q_A Ca3427, possible thiami 95.0 0.12 4.1E-06 53.8 11.2 73 440-524 30-109 (321)
160 2rc8_A Glutamate [NMDA] recept 94.9 0.0032 1.1E-07 65.0 -1.2 116 682-820 67-186 (294)
161 3h5t_A Transcriptional regulat 94.9 0.28 9.5E-06 52.0 14.0 169 35-221 101-295 (366)
162 2qpq_A Protein BUG27; alpha/be 94.9 0.015 5.2E-07 60.0 3.9 200 439-679 24-266 (301)
163 2dvz_A BUGE, putative exported 94.8 0.021 7.3E-07 59.1 4.6 199 439-678 35-278 (314)
164 1mqi_A Glutamate receptor 2; G 94.1 0.03 1E-06 56.3 4.1 117 681-819 30-147 (263)
165 2hqb_A Transcriptional activat 93.9 2.6 8.8E-05 42.9 18.2 184 2-217 7-204 (296)
166 1pb7_A N-methyl-D-aspartate re 93.6 0.015 5.2E-07 59.8 0.7 57 681-737 61-121 (292)
167 3mpk_A Virulence sensor protei 91.7 0.051 1.7E-06 54.8 1.6 104 681-820 52-155 (267)
168 4gvo_A LMO2349 protein; struct 91.6 0.021 7.3E-07 56.8 -1.5 103 681-819 29-133 (243)
169 1zbm_A Hypothetical protein AF 91.6 0.32 1.1E-05 49.2 7.4 58 453-523 37-97 (280)
170 2g29_A Nitrate transport prote 90.1 0.51 1.8E-05 51.0 7.7 65 448-524 56-134 (417)
171 2a5s_A N-methyl-D-aspartate re 89.4 0.09 3.1E-06 53.6 0.9 54 682-737 56-109 (284)
172 3ixl_A Amdase, arylmalonate de 89.2 3.3 0.00011 40.6 12.1 123 54-212 56-199 (240)
173 1us5_A Putative GLUR0 ligand b 89.0 2.9 9.8E-05 42.8 12.2 72 442-525 37-122 (314)
174 2v3u_A Glutamate receptor delt 88.8 0.09 3.1E-06 52.6 0.4 56 681-737 27-82 (265)
175 2q5c_A NTRC family transcripti 88.2 14 0.00049 34.7 15.4 125 48-219 36-162 (196)
176 2q88_A EHUB, putative ABC tran 87.4 0.13 4.3E-06 51.3 0.4 105 681-819 32-139 (257)
177 3kzg_A Arginine 3RD transport 87.2 0.23 8E-06 48.6 2.2 100 681-818 24-124 (237)
178 3s99_A Basic membrane lipoprot 86.5 6.4 0.00022 41.1 13.0 87 2-99 151-240 (356)
179 2dgd_A 223AA long hypothetical 85.9 2.5 8.5E-05 41.0 8.9 76 121-206 96-184 (223)
180 4f3p_A Glutamine-binding perip 85.5 0.16 5.4E-06 50.4 -0.0 102 681-819 43-145 (249)
181 3k4u_A Binding component of AB 85.5 0.072 2.5E-06 52.7 -2.6 105 681-819 25-130 (245)
182 4ab5_A Transcriptional regulat 85.3 3.9 0.00013 38.7 10.1 70 439-525 21-91 (222)
183 3hn0_A Nitrate transport prote 85.0 4.6 0.00016 40.7 10.8 31 453-495 32-62 (283)
184 3tql_A Arginine-binding protei 84.5 0.24 8.1E-06 47.9 0.7 102 681-819 22-124 (227)
185 3h7m_A Sensor protein; histidi 84.2 0.2 7E-06 48.7 0.1 103 681-820 31-133 (234)
186 3jv9_A OXYR, transcriptional r 84.0 6.8 0.00023 36.8 11.2 70 439-525 17-87 (219)
187 4dz1_A DALS D-alanine transpor 83.5 0.088 3E-06 52.7 -3.0 103 681-819 49-152 (259)
188 3ho7_A OXYR; beta-alpha-barrel 83.1 2.4 8.3E-05 40.6 7.5 70 439-525 24-94 (232)
189 4eq9_A ABC transporter substra 82.9 0.18 6E-06 49.7 -1.0 102 681-819 27-130 (246)
190 1wdn_A GLNBP, glutamine bindin 82.9 0.22 7.5E-06 48.1 -0.3 102 681-819 22-124 (226)
191 1ii5_A SLR1257 protein; membra 82.7 0.21 7.3E-06 48.5 -0.5 106 681-820 25-132 (233)
192 4h5g_A Amino acid ABC superfam 82.7 0.15 5.1E-06 50.5 -1.7 101 681-819 35-138 (243)
193 3oxn_A Putative transcriptiona 82.4 8.2 0.00028 37.1 11.2 70 439-525 32-102 (241)
194 3hv1_A Polar amino acid ABC up 82.3 0.25 8.6E-06 49.5 -0.1 101 681-819 41-142 (268)
195 2eq5_A 228AA long hypothetical 82.0 5.4 0.00019 38.6 9.5 124 56-212 67-193 (228)
196 3qvl_A Putative hydantoin race 82.0 23 0.00077 34.7 13.9 122 1-157 2-133 (245)
197 1lst_A Lysine, arginine, ornit 81.9 0.34 1.2E-05 47.3 0.7 102 681-819 24-126 (239)
198 3del_B Arginine binding protei 81.1 0.27 9.1E-06 48.3 -0.5 102 681-819 31-133 (242)
199 2i49_A Bicarbonate transporter 80.7 5.5 0.00019 42.9 9.8 64 448-523 59-136 (429)
200 2iee_A ORF2, probable ABC tran 80.6 0.23 7.9E-06 50.0 -1.2 102 681-819 44-147 (271)
201 3kbr_A Cyclohexadienyl dehydra 80.4 0.14 5E-06 50.1 -2.7 105 681-819 35-140 (239)
202 2zsk_A PH1733, 226AA long hypo 79.9 13 0.00044 35.9 11.4 37 57-94 66-102 (226)
203 2hqb_A Transcriptional activat 79.3 23 0.00078 35.7 13.6 121 2-135 128-248 (296)
204 2pyy_A Ionotropic glutamate re 79.2 0.31 1.1E-05 47.1 -0.7 104 681-820 21-128 (228)
205 2y7i_A STM4351; arginine-bindi 79.0 0.54 1.9E-05 45.4 1.0 102 681-820 26-128 (229)
206 2l69_A Rossmann 2X3 fold prote 79.0 8.2 0.00028 30.3 7.4 102 106-218 24-126 (134)
207 4esw_A Pyrimidine biosynthesis 78.9 15 0.0005 38.0 12.2 88 439-539 23-114 (342)
208 1jfl_A Aspartate racemase; alp 78.0 13 0.00044 36.0 10.7 39 55-94 65-103 (228)
209 2fqx_A Membrane lipoprotein TM 78.0 26 0.00089 35.7 13.7 123 2-133 131-263 (318)
210 2y7p_A LYSR-type regulatory pr 77.7 6.3 0.00022 37.5 8.4 70 439-525 21-91 (218)
211 1atg_A MODA, periplasmic molyb 77.4 3.7 0.00013 39.2 6.7 73 441-526 14-92 (231)
212 3lr1_A Tungstate ABC transport 77.3 3.5 0.00012 40.2 6.2 74 439-525 19-95 (236)
213 2pju_A Propionate catabolism o 76.3 34 0.0012 32.8 12.8 135 38-219 39-174 (225)
214 2k1e_A Water soluble analogue 74.9 2.8 9.7E-05 34.9 4.2 39 750-788 59-97 (103)
215 3muq_A Uncharacterized conserv 74.7 5 0.00017 39.2 6.5 74 439-525 19-95 (237)
216 2dwu_A Glutamate racemase; iso 74.7 17 0.00058 36.3 10.7 127 53-212 58-200 (276)
217 4ib2_A Putative lipoprotein; p 74.6 6.4 0.00022 38.6 7.2 68 442-521 26-98 (252)
218 2xed_A Putative maleate isomer 73.8 7.1 0.00024 39.1 7.6 115 56-206 82-221 (273)
219 2gzm_A Glutamate racemase; enz 71.7 34 0.0012 33.9 12.1 41 54-94 55-95 (267)
220 2l82_A Designed protein OR32; 71.6 36 0.0012 27.6 9.5 103 111-229 5-111 (162)
221 1i6a_A OXYR, hydrogen peroxide 71.4 11 0.00038 35.5 8.3 70 439-525 18-88 (219)
222 3qax_A Probable ABC transporte 70.0 0.84 2.9E-05 45.3 -0.3 104 681-820 51-155 (268)
223 2ih3_C Voltage-gated potassium 69.7 3.6 0.00012 35.4 3.8 38 750-787 80-117 (122)
224 2vvt_A Glutamate racemase; iso 69.2 36 0.0012 34.2 11.8 42 53-94 75-116 (290)
225 4i62_A Amino acid ABC transpor 68.8 0.29 9.7E-06 48.9 -4.2 103 681-819 62-165 (269)
226 4h33_A LMO2059 protein; bilaye 68.4 4.3 0.00015 35.8 4.0 39 750-788 62-100 (137)
227 2pvu_A ARTJ; basic amino acid 68.3 0.86 2.9E-05 45.6 -0.7 101 681-819 61-162 (272)
228 3onm_A Transcriptional regulat 68.2 11 0.00037 36.3 7.5 68 439-525 40-108 (238)
229 1twy_A ABC transporter, peripl 66.7 11 0.00038 37.3 7.5 70 442-525 43-114 (290)
230 2jfq_A Glutamate racemase; cel 66.6 37 0.0013 34.0 11.2 41 54-94 74-114 (286)
231 2ql3_A Probable transcriptiona 65.9 19 0.00066 33.4 8.6 70 439-525 18-88 (209)
232 2yjp_A Putative ABC transporte 64.8 1.3 4.4E-05 44.9 -0.2 101 681-819 75-179 (291)
233 2zzv_A ABC transporter, solute 64.2 10 0.00036 39.6 6.8 64 442-512 53-118 (361)
234 3ist_A Glutamate racemase; str 64.1 48 0.0016 32.8 11.2 40 55-94 58-97 (269)
235 1zuw_A Glutamate racemase 1; ( 64.1 64 0.0022 31.9 12.3 43 52-94 53-96 (272)
236 3out_A Glutamate racemase; str 61.2 37 0.0013 33.7 9.8 41 54-94 59-100 (268)
237 3ojc_A Putative aspartate/glut 60.7 26 0.00089 33.9 8.4 38 56-94 68-105 (231)
238 2a9h_A Voltage-gated potassium 60.5 7.7 0.00026 35.0 4.2 40 750-789 103-142 (155)
239 1xs5_A 29 kDa protein, membran 60.3 10 0.00036 37.0 5.5 38 443-492 19-56 (241)
240 4ef1_A Pheromone COB1/lipoprot 60.1 12 0.00041 36.5 5.8 66 443-520 20-90 (246)
241 3cvg_A Putative metal binding 60.0 13 0.00045 37.5 6.5 74 439-525 33-116 (294)
242 3k2d_A ABC-type metal ION tran 59.4 9.8 0.00033 36.8 4.9 66 444-521 23-94 (237)
243 3gxa_A Outer membrane lipoprot 59.4 15 0.00051 36.4 6.3 66 445-522 42-112 (275)
244 3i6v_A Periplasmic His/Glu/Gln 59.3 3.7 0.00013 39.7 2.1 43 681-736 25-67 (232)
245 1xt8_A Putative amino-acid tra 58.5 2 7E-05 43.3 -0.0 101 681-819 64-168 (292)
246 3pjs_K KCSA, voltage-gated pot 58.4 4.7 0.00016 36.9 2.5 39 750-788 86-124 (166)
247 4got_A Methionine-binding lipo 57.5 11 0.00039 36.7 5.1 69 443-523 22-96 (249)
248 3kn3_A Putative periplasmic pr 57.5 8.5 0.00029 37.6 4.2 74 439-525 19-95 (242)
249 3tqw_A Methionine-binding prot 56.7 13 0.00044 36.1 5.3 66 443-520 19-90 (240)
250 3eff_K Voltage-gated potassium 56.3 8 0.00027 34.1 3.5 37 750-786 59-95 (139)
251 3ir1_A Outer membrane lipoprot 55.2 20 0.00068 34.8 6.3 66 445-522 20-90 (245)
252 2pfy_A Putative exported prote 54.0 18 0.00061 36.6 6.3 63 442-511 21-84 (301)
253 3ouf_A Potassium channel prote 53.5 5.5 0.00019 32.6 1.9 40 750-789 51-90 (97)
254 3up9_A Putative uncharacterize 53.4 21 0.00073 34.6 6.2 63 448-522 29-96 (245)
255 1sw5_A Osmoprotection protein 53.2 60 0.002 32.1 10.0 70 443-524 23-119 (275)
256 3uhf_A Glutamate racemase; str 51.8 49 0.0017 32.8 8.8 39 56-94 78-116 (274)
257 2yln_A Putative ABC transporte 51.7 6.4 0.00022 39.4 2.4 102 681-819 77-179 (283)
258 3fzv_A Probable transcriptiona 51.3 32 0.0011 34.2 7.8 70 439-525 108-179 (306)
259 1p99_A Hypothetical protein PG 50.2 18 0.00061 36.6 5.4 38 443-492 54-91 (295)
260 2pfz_A Putative exported prote 50.0 19 0.00063 36.5 5.6 54 442-502 20-73 (301)
261 2rin_A Putative glycine betain 49.8 26 0.00089 35.4 6.7 69 443-524 24-100 (298)
262 4exl_A PBP 1, phosphate-bindin 49.3 36 0.0012 33.6 7.5 71 442-525 19-92 (265)
263 4ecf_A ABC-type phosphate tran 48.5 33 0.0011 33.8 7.1 71 441-525 18-92 (264)
264 2q67_A Potassium channel prote 48.4 15 0.00051 31.1 3.8 39 750-788 68-106 (114)
265 2fyi_A HTH-type transcriptiona 48.3 40 0.0014 31.7 7.6 71 439-525 27-98 (228)
266 1ixh_A Phosphate-binding prote 47.3 30 0.001 35.3 6.8 71 442-525 17-88 (321)
267 1ixc_A CBNR, LYSR-type regulat 47.3 40 0.0014 33.3 7.7 70 439-525 104-174 (294)
268 3r26_A Molybdate-binding perip 46.2 30 0.001 33.4 6.3 71 442-525 22-98 (237)
269 2jfz_A Glutamate racemase; cel 45.0 75 0.0026 31.0 9.0 39 56-94 54-92 (255)
270 1b73_A Glutamate racemase; iso 44.9 67 0.0023 31.4 8.6 42 53-94 51-92 (254)
271 2czl_A Hypothetical protein TT 43.6 55 0.0019 32.1 8.0 29 453-494 29-57 (272)
272 3gzg_A Molybdate-binding perip 43.0 31 0.0011 33.8 5.8 71 442-525 38-114 (253)
273 2hxr_A HTH-type transcriptiona 42.7 51 0.0018 31.1 7.4 70 439-525 43-113 (238)
274 3ldc_A Calcium-gated potassium 42.6 18 0.00063 28.3 3.3 35 750-784 47-81 (82)
275 4gd5_A Phosphate ABC transport 41.6 65 0.0022 31.8 8.1 70 443-525 53-123 (279)
276 2hzl_A Trap-T family sorbitol/ 40.7 27 0.00094 36.4 5.3 57 443-506 53-109 (365)
277 3s81_A Putative aspartate race 39.6 59 0.002 32.1 7.2 40 54-94 89-128 (268)
278 3cfz_A UPF0100 protein MJ1186; 39.5 52 0.0018 32.8 7.1 71 442-525 20-96 (292)
279 3tmg_A Glycine betaine, L-prol 39.3 83 0.0028 31.2 8.4 70 442-525 32-109 (280)
280 1uth_A LYSR-type regulatory pr 38.7 72 0.0025 31.9 8.1 70 439-525 118-188 (315)
281 3l6g_A Betaine ABC transporter 38.6 80 0.0027 30.9 8.1 80 440-533 16-102 (256)
282 3zy2_A Putative GDP-fucose pro 38.6 1.3E+02 0.0044 30.7 9.3 91 111-217 258-348 (362)
283 3lkv_A Uncharacterized conserv 38.2 1.3E+02 0.0046 29.9 10.0 112 2-130 142-256 (302)
284 3uhj_A Probable glycerol dehyd 38.1 35 0.0012 35.9 5.6 73 123-204 43-117 (387)
285 2h9b_A HTH-type transcriptiona 37.8 57 0.0019 32.6 7.1 70 439-525 103-173 (312)
286 2b4l_A Glycine betaine-binding 36.7 1.2E+02 0.0041 29.8 9.0 70 442-524 181-257 (268)
287 2xwv_A Sialic acid-binding per 36.1 59 0.002 32.9 6.8 48 442-496 22-69 (312)
288 2hpg_A ABC transporter, peripl 36.0 43 0.0015 34.3 5.7 47 443-496 29-75 (327)
289 3o74_A Fructose transport syst 35.8 2.2E+02 0.0075 27.3 11.1 114 2-130 122-247 (272)
290 2jfn_A Glutamate racemase; cel 35.6 60 0.0021 32.4 6.7 42 53-94 72-114 (285)
291 2esn_A Probable transcriptiona 35.2 77 0.0026 31.4 7.6 70 439-525 114-187 (310)
292 3cfx_A UPF0100 protein MA_0280 34.6 76 0.0026 31.6 7.4 71 442-525 20-96 (296)
293 3fxq_A LYSR type regulator of 33.5 81 0.0028 31.2 7.5 72 439-525 105-177 (305)
294 2h98_A HTH-type transcriptiona 33.1 89 0.003 31.2 7.7 69 439-524 103-172 (313)
295 3cij_A UPF0100 protein AF_0094 32.9 72 0.0025 31.8 6.9 71 442-525 20-96 (295)
296 3kos_A HTH-type transcriptiona 32.5 72 0.0025 29.5 6.5 64 439-522 25-89 (219)
297 1p7b_A Integral membrane chann 32.4 50 0.0017 33.8 5.4 41 750-790 115-155 (333)
298 3k9c_A Transcriptional regulat 32.3 3.3E+02 0.011 26.4 11.8 115 2-130 128-253 (289)
299 3fd3_A Chromosome replication 31.3 82 0.0028 28.6 6.6 68 439-523 15-82 (208)
300 2l69_A Rossmann 2X3 fold prote 30.6 51 0.0018 25.9 3.9 69 109-189 52-120 (134)
301 3umf_A Adenylate kinase; rossm 29.9 24 0.00082 33.7 2.4 36 60-95 25-61 (217)
302 3l49_A ABC sugar (ribose) tran 29.8 89 0.003 30.7 6.9 79 134-219 6-88 (291)
303 3jy6_A Transcriptional regulat 29.5 1E+02 0.0034 30.0 7.2 77 133-218 7-86 (276)
304 3qk7_A Transcriptional regulat 28.5 3.1E+02 0.011 26.7 10.9 116 2-130 128-256 (294)
305 3d8u_A PURR transcriptional re 28.3 2.4E+02 0.0082 27.0 9.9 116 2-130 122-249 (275)
306 3i42_A Response regulator rece 28.2 2.4E+02 0.0083 22.9 8.8 67 135-217 5-73 (127)
307 1pc3_A Phosphate-binding prote 28.2 76 0.0026 32.7 6.1 70 442-524 42-114 (350)
308 3sr0_A Adenylate kinase; phosp 26.4 34 0.0012 32.3 2.8 31 65-95 2-32 (206)
309 3k4h_A Putative transcriptiona 26.1 1.8E+02 0.0062 28.3 8.5 116 2-130 133-260 (292)
310 2rgy_A Transcriptional regulat 26.0 4E+02 0.014 25.8 11.1 116 2-130 130-257 (290)
311 2csu_A 457AA long hypothetical 25.9 1.2E+02 0.0042 32.5 7.5 144 49-218 73-228 (457)
312 3cg4_A Response regulator rece 25.8 2.9E+02 0.0098 23.0 11.4 67 134-216 8-76 (142)
313 3g1w_A Sugar ABC transporter; 25.4 2.7E+02 0.0093 27.2 9.8 118 2-130 129-256 (305)
314 1ryo_A Serotransferrin; iron t 24.9 99 0.0034 31.5 6.1 41 441-493 19-62 (327)
315 2qks_A KIR3.1-prokaryotic KIR 24.9 54 0.0019 33.4 4.1 41 750-790 97-137 (321)
316 3lte_A Response regulator; str 24.5 2.8E+02 0.0095 22.7 8.4 69 134-218 7-77 (132)
317 3m9w_A D-xylose-binding peripl 24.4 93 0.0032 31.0 6.0 78 134-218 3-84 (313)
318 3kht_A Response regulator; PSI 24.4 3.1E+02 0.011 22.9 9.0 69 135-217 7-77 (144)
319 3ox4_A Alcohol dehydrogenase 2 24.3 58 0.002 34.2 4.3 86 122-214 20-111 (383)
320 1orq_C Potassium channel; volt 24.2 53 0.0018 31.2 3.8 37 750-786 184-220 (223)
321 1nrz_A PTS system, sorbose-spe 24.0 1.2E+02 0.004 27.4 5.7 80 121-211 15-94 (164)
322 1vsq_C Mannose-specific phosph 24.0 1.2E+02 0.0042 27.3 5.9 80 121-211 18-97 (165)
323 3hcw_A Maltose operon transcri 23.9 4.9E+02 0.017 25.2 11.3 113 2-130 133-260 (295)
324 3bfj_A 1,3-propanediol oxidore 23.8 78 0.0027 33.2 5.3 81 123-213 23-114 (387)
325 3tb6_A Arabinose metabolism tr 23.7 1.2E+02 0.004 29.8 6.5 79 134-219 16-101 (298)
326 2fp4_A Succinyl-COA ligase [GD 23.7 5.5E+02 0.019 25.5 14.2 142 49-215 80-234 (305)
327 3gbv_A Putative LACI-family tr 23.7 2.5E+02 0.0085 27.4 9.1 105 12-129 155-266 (304)
328 3rhg_A Putative phophotriester 23.4 6.1E+02 0.021 26.0 13.4 152 49-218 73-248 (365)
329 3dnf_A ISPH, LYTB, 4-hydroxy-3 23.4 99 0.0034 30.8 5.5 55 40-94 186-241 (297)
330 3l4e_A Uncharacterized peptida 23.3 2.5E+02 0.0086 26.2 8.2 83 121-219 15-103 (206)
331 1al3_A Cys regulon transcripti 23.1 1.3E+02 0.0045 30.1 6.8 70 440-525 107-177 (324)
332 3vou_A ION transport 2 domain 23.0 42 0.0014 29.7 2.5 36 750-785 71-106 (148)
333 3gl9_A Response regulator; bet 22.7 2.7E+02 0.0093 22.6 7.8 66 135-217 4-72 (122)
334 4f2d_A L-arabinose isomerase; 22.7 3.5E+02 0.012 29.2 10.3 80 12-97 25-106 (500)
335 3ce9_A Glycerol dehydrogenase; 22.6 1.1E+02 0.0036 31.7 6.0 93 108-211 12-108 (354)
336 4dik_A Flavoprotein; TM0755, e 22.5 6.1E+02 0.021 26.5 12.0 86 133-227 265-359 (410)
337 2vha_A Periplasmic binding tra 22.2 1.5E+02 0.0052 28.8 7.0 69 443-523 143-218 (287)
338 3brq_A HTH-type transcriptiona 22.1 3.7E+02 0.013 25.9 10.0 116 2-130 141-268 (296)
339 2hxw_A Major antigenic peptide 22.1 95 0.0032 29.4 5.2 70 442-525 16-92 (237)
340 3nrb_A Formyltetrahydrofolate 22.1 3.1E+02 0.011 27.2 9.0 86 64-155 8-108 (287)
341 3grc_A Sensor protein, kinase; 21.9 3E+02 0.01 22.8 8.2 67 134-216 7-75 (140)
342 3l6u_A ABC-type sugar transpor 21.8 1.1E+02 0.0038 29.9 5.9 81 132-219 7-91 (293)
343 1xl4_A Inward rectifier potass 21.7 69 0.0024 32.3 4.1 39 750-788 101-139 (301)
344 1jq5_A Glycerol dehydrogenase; 21.7 83 0.0029 32.7 5.0 93 108-211 10-106 (370)
345 2v25_A Major cell-binding fact 21.5 90 0.0031 29.7 5.0 41 442-494 160-200 (259)
346 3g85_A Transcriptional regulat 21.2 2.4E+02 0.0081 27.4 8.2 116 2-130 129-258 (289)
347 2iks_A DNA-binding transcripti 21.1 5.6E+02 0.019 24.6 11.1 113 2-129 140-264 (293)
348 3rot_A ABC sugar transporter, 21.0 2.6E+02 0.009 27.3 8.6 115 2-129 132-259 (297)
349 2fep_A Catabolite control prot 21.0 4.9E+02 0.017 25.1 10.6 116 2-130 135-263 (289)
350 3lfj_A Manxb, phosphotransfera 20.8 95 0.0032 28.7 4.4 78 121-212 36-116 (187)
351 2ozz_A Hypothetical protein YH 20.3 1.5E+02 0.0052 28.4 6.0 69 443-525 125-200 (231)
352 2qh8_A Uncharacterized protein 20.2 3.9E+02 0.013 26.1 9.7 109 2-130 142-256 (302)
353 3o6p_A Peptide ABC transporter 20.1 1.2E+02 0.0041 28.6 5.5 41 442-495 115-157 (229)
354 3pam_A Transmembrane protein; 20.1 1.1E+02 0.0038 29.6 5.3 41 442-495 144-184 (259)
355 3gt7_A Sensor protein; structu 20.0 3.6E+02 0.012 23.0 8.4 68 134-217 8-77 (154)
356 1h45_A Lactoferrin; metal tran 20.0 1.2E+02 0.0039 31.1 5.4 41 441-493 20-60 (334)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=8.8e-77 Score=721.17 Aligned_cols=631 Identities=30% Similarity=0.571 Sum_probs=517.9
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHH
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNII 80 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v 80 (821)
||||+++|++|...+.|+++|+|+||+++ ++|+++++|+.+.++..+++++|++++++|.|||||.+|..+.++
T Consensus 3 ikIG~l~~~tg~~~~~a~~lAveeiN~~~------~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~~~a~ 76 (823)
T 3kg2_A 3 IQIGGLFPRGADQEYSAFRVGMVQFSTSE------FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTI 76 (823)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHTCCSS------CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTTHHHH
T ss_pred ceEEEEeCCCChHHHHHHHHHHHHHhcCC------eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhHHHHH
Confidence 69999999999999999999999999984 799999999654499999999999999999999999999999999
Q ss_pred HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCC
Q psy16206 81 ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDD 160 (821)
Q Consensus 81 ~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~ 160 (821)
+++++.+++|+|+++. +. ...++|+||+.|+ ++.+++++++++||++|++||+++.+...++.+.++..
T Consensus 77 ~~i~~~~~iP~is~~~-~~----~~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~d~~~g~~~~~~~~~~~~--- 145 (823)
T 3kg2_A 77 TSFCGTLHVSFITPSF-PT----DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAA--- 145 (823)
T ss_dssp HHHHHHTTCEEEECSC-CC----SSCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEECGGGCTHHHHHHHHHHH---
T ss_pred HHHhhcCCCceeeccc-CC----CCCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEEeCChhHHHHHHHHHHhh---
Confidence 9999999999999732 32 2467899999999 88999999999999999999965556666666666665
Q ss_pred CcCCCCCCeEEEEE-cCCC----CCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccccccc
Q psy16206 161 KEIRPGRPSVTIRQ-LPPD----TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWIN 235 (821)
Q Consensus 161 ~~~~~~g~~v~~~~-~~~~----~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~ 235 (821)
..|.+|.... ++.+ ..|+++++++|+++++++|++.+...++..+++||+++||.+++|+|++++ .+
T Consensus 146 ----~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~----~~ 217 (823)
T 3kg2_A 146 ----EKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIAN----LG 217 (823)
T ss_dssp ----HTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECS----SB
T ss_pred ----ccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEec----cc
Confidence 5578887653 5554 789999999999999999999999999999999999999999999999988 33
Q ss_pred ccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCC
Q psy16206 236 AHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKP 315 (821)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~ 315 (821)
....+.........+++++..+.++++.+++|.++|+++++.+. +......++.+++++||||+++|+|+++++.+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~ 295 (823)
T 3kg2_A 218 FTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEY--PGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRI 295 (823)
T ss_dssp SSSSCCSSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTS--TTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccccchHHhhcCCCCceEeeeecCCchHHHHHHHHHHhhccccc--CCCCccccchhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444545567789998888889999999999999886552 2223345788899999999999999999975422
Q ss_pred C----CCCCCCCCC--CCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCccee
Q psy16206 316 L----PTPLSCENP--SSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHS 389 (821)
Q Consensus 316 ~----~~~~~c~~~--~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~~~ 389 (821)
- ..++.|... ..|.+|.+++++|++++|+|++|+++||+ +|++....|+|+++.+++++.||.|++..|+...
T Consensus 296 ~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~-~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~ 374 (823)
T 3kg2_A 296 EISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQ-NGKRINYTINIMELKTNGPRKIGYWSEVDKMVLT 374 (823)
T ss_dssp CCCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCS-SSCBCSCEEEEEEECSSCEEEEEEEETTTEEEEC
T ss_pred ccccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECC-CCcccccEEEEEEEcCCCCeeEEEEcCCCCceec
Confidence 1 456788764 56889999999999999999999999999 9999999999999999999999999999998865
Q ss_pred ccccccchhhhhhccCceEEEEeeccceeeeeecCCCceeecC-----CCCCce-eeHHHHHHHHHHHcCCeEEEEEecC
Q psy16206 390 RTVEQMDKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNP-----ETGELY-GYSVDLIKMIANELNFTYKFVLERE 463 (821)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~-----~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~ 463 (821)
.+. ...+++++|+|+|. .+|||.+... ++++++ ||++|+++++++++|++++++.+++
T Consensus 375 ~~~-------~~~~~~~~l~v~~~---------~~~P~~~~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~ 438 (823)
T 3kg2_A 375 EDD-------TSGLEQKTVVVTTI---------LESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGD 438 (823)
T ss_dssp CCC-------CSSCCCCCEEEEEC---------CCTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred cCc-------ccccCCCEEEEEEe---------cCCCcEEEecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccC
Confidence 422 12356788999888 8999998532 233588 9999999999999999999999999
Q ss_pred CcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHH
Q psy16206 464 NTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWV 543 (821)
Q Consensus 464 ~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~ 543 (821)
++||..++++++|++++++|.+|++|++++++++|++|.+.++||.||+..+.+++++++.....+++.+++||+..+|+
T Consensus 439 ~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~ 518 (823)
T 3kg2_A 439 GKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWM 518 (823)
T ss_dssp CCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHH
T ss_pred CcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHH
Confidence 99999998899999999999999999999999999999999999999999999999999876667889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchh
Q psy16206 544 YMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIE 623 (821)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~ 623 (821)
+++++++++++++|++++++|++ |.....
T Consensus 519 ~i~~~~~~~~~~l~~~~~~~p~~-----------------w~~~~~---------------------------------- 547 (823)
T 3kg2_A 519 CIVFAYIGVSVVLFLVSRFSPYE-----------------WHTEEF---------------------------------- 547 (823)
T ss_dssp HHHHHHHHHHTTGGGTC---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcChhh-----------------ccCccc----------------------------------
Confidence 99999999999999999887630 000000
Q ss_pred hhhhhcCCceeecceecCCCcccccCCchhhcccccceeEEEEeecCCccccccCCCCCccceecchHHHHHhhcCceEE
Q psy16206 624 YEVEKNCDLMQVGGLLDSKGYGIAMPTSKFLAKFSFGFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYK 703 (821)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~a~~k~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~~g~~~d~~~~~~~~~~~~~~ 703 (821)
.+... +..
T Consensus 548 ---------------------------------------------~~~~~----~~~----------------------- 555 (823)
T 3kg2_A 548 ---------------------------------------------EDGRE----TQS----------------------- 555 (823)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------ccccc----ccc-----------------------
Confidence 00000 000
Q ss_pred EEEccCCcccccCCCCCcchhhHHHHhhccceeeeehhhhhhhhh-hcccccccccchhhHHHHHHHHHHHHHHHHHHHh
Q psy16206 704 FVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILFFIYSILFFI-YTFVNEAVSTRLVAGMWWFFTLIMISSYTANLAA 782 (821)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~ 782 (821)
.+....+ ++. ..+|+.+++++.. ....|++.++|++.++|||++||++++|||+|+|
T Consensus 556 ------------~~~~~~~-~~~---------~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s 613 (823)
T 3kg2_A 556 ------------SESTNEF-GIF---------NSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAA 613 (823)
T ss_dssp ---------------CHHH-HHH---------HHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------ccccccc-cHH---------HHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000 0011222222211 1357999999999999999999999999999999
Q ss_pred hhhccCCCCCCCChhhhhhcCceeEEEEecCccccccc
Q psy16206 783 FLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820 (821)
Q Consensus 783 ~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~ 820 (821)
+||++++.++|+|++||++|+++++|++.++++..||+
T Consensus 614 ~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~ 651 (823)
T 3kg2_A 614 FLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFR 651 (823)
T ss_dssp HHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHH
T ss_pred HhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHH
Confidence 99999999999999999999999999999999988875
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=3.2e-49 Score=434.94 Aligned_cols=366 Identities=23% Similarity=0.427 Sum_probs=306.8
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCC-CCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHH
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKAL-PPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNI 79 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~l-l~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~ 79 (821)
||||+++|++|..++.|+++|+++||++++ + ++|++|+++++|+.|+|+.++++++|+|++++|.|||||.+|..+.+
T Consensus 6 i~IG~i~~~sg~~~~~a~~lAv~eiN~~g~-ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S~~~~a 84 (389)
T 3o21_A 6 ISIGGLFMRNTVQEHSAFRFAVQLYNTNQN-TTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNT 84 (389)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHSCCC-TTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCTTTHHH
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCcc-ccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCChhHHHH
Confidence 689999999999999999999999999999 6 68999999999955459999999999999999999999999999999
Q ss_pred HHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCC
Q psy16206 80 IESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDD 159 (821)
Q Consensus 80 v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~ 159 (821)
++++++.++||+|+++. +.. ...+|.||+.|+ ++.+++++++++||++|++||+++.+...++.+.+...
T Consensus 85 ~~~i~~~~~iP~Is~s~-~~~----~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~d~~~g~~~~~~~~~~~~-- 154 (389)
T 3o21_A 85 LTSFCGALHTSFVTPSF-PTD----ADVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLYDTERGFSVLQAIMEAAV-- 154 (389)
T ss_dssp HHHHHHHHTCCEEECSC-CCS----SCCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEECSTTCSHHHHHHHHHHH--
T ss_pred HHHHhccCCCceeecCC-CCc----cCCceEEEEccC---HHHHHHHHHHhCCCCEEEEEEcCcHHHHHHHHHHHHhh--
Confidence 99999999999998854 332 345678888887 89999999999999999999955446666666666665
Q ss_pred CCcCCCCCCeEEEEE-cCC-CCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccccccccc
Q psy16206 160 DKEIRPGRPSVTIRQ-LPP-DTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAH 237 (821)
Q Consensus 160 ~~~~~~~g~~v~~~~-~~~-~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~ 237 (821)
..|.+|.... ++. +..||+++|++|+++++++|++.+...++..+++|++++||..+.|+||+++ .+..
T Consensus 155 -----~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~----~~~~ 225 (389)
T 3o21_A 155 -----QNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLAN----LGFT 225 (389)
T ss_dssp -----HTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECC----TTGG
T ss_pred -----cCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEcc----CCcc
Confidence 5577887665 433 2448999999999999999999999999999999999999999999999987 2222
Q ss_pred ccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCC-C
Q psy16206 238 TVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKP-L 316 (821)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~-~ 316 (821)
..++..+.....++++++...++++.+++|.++|+++++..++ ..+...++.+++++||||+++++|+++++.+.. .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~--~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~ 303 (389)
T 3o21_A 226 DILLERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFP--EAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDV 303 (389)
T ss_dssp GCCCHHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTST--TSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cccHHHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 3333344445578899988888899999999999998754321 112234678999999999999999999975321 1
Q ss_pred ---CCCCCCC--CCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCccee
Q psy16206 317 ---PTPLSCE--NPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHS 389 (821)
Q Consensus 317 ---~~~~~c~--~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~~~ 389 (821)
..+++|. ...+|.+|.+|+++|++++|+|++|++.||+ +|++.++.|+|+++.++++++||.|++..|++..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~-~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~~ 380 (389)
T 3o21_A 304 SRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDT-YGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVPF 380 (389)
T ss_dssp C-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCT-TSBBCSCCEEEEEEETTEEEEEEEEETTTEEECC
T ss_pred ccCCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCC-CCCcccceEEEEEEcCCCceeeeEEcCCCCcccc
Confidence 3456784 3467999999999999999999999999999 9999989999999999999999999999999754
No 3
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=8e-49 Score=433.51 Aligned_cols=371 Identities=22% Similarity=0.431 Sum_probs=310.7
Q ss_pred CcEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCC-hhHHHHHHHHHhhcCeEEEEcCCCcc-
Q psy16206 1 MKIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYD-SLHTAKLMCNATSEGIAAIFGPQSIE- 75 (821)
Q Consensus 1 i~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~-~~~a~~~a~~li~~~V~aiiGp~~s~- 75 (821)
||||+++|+++ ..++.|+++|+|+||++++ +++|++|+++++| ++++ +..+.+++|+++.++|.|||||.+|.
T Consensus 5 ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~gg-il~g~~l~~~~~D-~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 5 LRMAAILDDQTVCGRGERLALALAREQINGIIE-VPAKARVEVDIFE-LQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp EEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCC-SSCCCEEEEEEEE-CCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred eeEEEEecCCCcccHHHHHHHHHHHHHHhcCcc-cccCcEEEEEEEe-cCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 69999999987 6789999999999999999 8899999999999 5565 56778899999988999999999995
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccE--EEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHH
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHG--VNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVL 153 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~--~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~ 153 (821)
++.+++++++.+++|+|+++++.+ +...++++ ||+.|++..++++++++++++||++|++||+++++...+++++
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~~---~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~ 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEET---PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCCC---C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH
T ss_pred HHHHHHHHHhccCCCeEeccCCcC---ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH
Confidence 557999999999999999976542 24567888 9999999999999999999999999999999999888888888
Q ss_pred HhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccccc
Q psy16206 154 ENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYW 233 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~ 233 (821)
++.. ..|.++....+ ++..||+++|++|+++++++|++.+...++..+++|++++||..+.++|++++
T Consensus 160 ~~~~-------~~g~~v~~~~~-~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~---- 227 (393)
T 3om0_A 160 RGFL-------ISKETLSVRML-DDSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTT---- 227 (393)
T ss_dssp HHHH-------HSSSCEEEEEC-C-CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECC----
T ss_pred Hhhh-------ccCCeEEEEec-CCCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEec----
Confidence 7764 45677776666 45789999999999999999999999999999999999999999999999988
Q ss_pred ccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy16206 234 INAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGER 313 (821)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~ 313 (821)
.+....++........++++++...++++.+++|.++|+++++.. +.. .....++.+++++|||++++++|++++++.
T Consensus 228 ~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~-~~~-~~~~~p~~~a~~~YDAv~~la~Al~~~~~~ 305 (393)
T 3om0_A 228 MDFPILHLDGIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWREN-CEA-STYPGPALSAALMFDAVHVVVSAVRELNRS 305 (393)
T ss_dssp TTGGGCCCTTTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTT-SCG-GGCCSCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccchhhhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhh-ccC-CCCCCCchHHHHHHhHHHHHHHHHHHHhhc
Confidence 333333344444456789999888888999999999999888632 110 011246789999999999999999999865
Q ss_pred CCC-CCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCcceecc
Q psy16206 314 KPL-PTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHSRT 391 (821)
Q Consensus 314 ~~~-~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~~~~~ 391 (821)
... .+.+.|....+|.++.+++++|++++|+|++|+++||+ +|++.+..|+|+++++++++.||.|++..|++++.+
T Consensus 306 ~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~-~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl~~~~~ 383 (393)
T 3om0_A 306 QEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNS-KGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMNAT 383 (393)
T ss_dssp SCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCT-TSCBCSCEEEEEEEETTEEEEEEEEECC--------
T ss_pred ccCcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCC-CCcccceeEEEEEeccCCceEeeeEcCCCCcccccc
Confidence 556 77889998888999999999999999999999999999 999988999999999999999999999999987754
No 4
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=1.4e-47 Score=424.01 Aligned_cols=375 Identities=31% Similarity=0.571 Sum_probs=317.1
Q ss_pred CcEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcch
Q psy16206 1 MKIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIEN 76 (821)
Q Consensus 1 i~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~ 76 (821)
||||+++|++| ...+.|+++|+++||++++ ++++++|++++.|+++.|+..+.+.+|+|++++|.|||||.+|..
T Consensus 5 i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~gg-il~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S~~ 83 (395)
T 3h6g_A 5 LRFGGIFEYVESGPMGAEELAFRFAVNTINRNRT-LLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSS 83 (395)
T ss_dssp EEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSS-SSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSHHH
T ss_pred eEEEEEecCCCcccchHHHHHHHHHHHHHhcCcc-ccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCChhH
Confidence 69999999977 5789999999999999999 888999999999987789999999999999889999999999999
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhc
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENA 156 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~ 156 (821)
+.+++++++.+++|+|+++++...++ ...+|+||+.|++..++++++++++++||++|+++++++.+...++.+.+..
T Consensus 84 ~~a~~~~~~~~~ip~is~~~~~~~l~--~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~d~~~g~~~~~~~~~~~ 161 (395)
T 3h6g_A 84 ANAVQSICNALGVPHIQTRWKHQVSD--NKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAP 161 (395)
T ss_dssp HHHHHHHHHHTTCCEEECSCCCCCTT--CCCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEESSTHHHHHTHHHHTGG
T ss_pred HHHHHHHHhcCCCCeEeeccCccccc--ccCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEEEChhHHHHHHHHHHhh
Confidence 99999999999999999977654433 3467899999999999999999999999999999986554555556665555
Q ss_pred CCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccc
Q psy16206 157 HDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINA 236 (821)
Q Consensus 157 ~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~ 236 (821)
. ..|.++....++.+..||+++|++|+++++++|++.+...++..+++|++++||..+.|+|++++ ++.
T Consensus 162 ~-------~~g~~v~~~~~~~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~----~~~ 230 (395)
T 3h6g_A 162 S-------RYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTT----LDL 230 (395)
T ss_dssp G-------TSSCEEEEEECCSSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECC----TTG
T ss_pred h-------cCCceEEEEEeCCCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEec----Cce
Confidence 5 66788877678877889999999999999999999999999999999999999999999999987 554
Q ss_pred cccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccc--cccccccchhHHHHHHHHHHHHHHHHHhhccC
Q psy16206 237 HTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSL--NVRAETVKIEAALMYDAVYLFAAALQSLGERK 314 (821)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~ 314 (821)
...+...+.....++++++...++++..++|.++|++++....+.. ......++.+++++|||++++++|+++++
T Consensus 231 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~--- 307 (395)
T 3h6g_A 231 FALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFP--- 307 (395)
T ss_dssp GGBCCTTTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCT---
T ss_pred eEechHHhccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhh---
Confidence 4444444433445678888888889999999999998764332111 11112357799999999999999999986
Q ss_pred CC-CCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCcceeccc
Q psy16206 315 PL-PTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHSRTV 392 (821)
Q Consensus 315 ~~-~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~~~~~~ 392 (821)
.. .+.+.|.....|.++..++++|++++|+|++|+++||+.+|++....|.|+++++++++.||.|++.+|+++..+.
T Consensus 308 ~~~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~~~~~ 386 (395)
T 3h6g_A 308 QMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQ 386 (395)
T ss_dssp TCCCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTTEECCCC--
T ss_pred cCCCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCCCCccccCCc
Confidence 34 6678899888899999999999999999999999999427999988999999999999999999999999887654
No 5
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.2e-47 Score=423.93 Aligned_cols=368 Identities=23% Similarity=0.405 Sum_probs=312.5
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCCC-CceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHH
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALP-PDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNI 79 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll-~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~ 79 (821)
||||++||.++.+.+.|+++|||+||++++ ++ ++.+|.+...+++++++..+++.+|+|+++||.|||||.||..+.+
T Consensus 6 I~IG~lf~~~~~~~~~a~~~Av~~iN~~~~-ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~~~~ 84 (389)
T 4gpa_A 6 VQIGGLFIRNTDQEYTAFRLAIFLHNTSPN-ASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHT 84 (389)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHTCSC-TTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCCTTTHHH
T ss_pred EEEEEEEcCCChHHHHHHHHHHHHHHhCCC-CCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCccHHHHH
Confidence 799999999999899999999999999998 55 5667777777766789999999999999999999999999999999
Q ss_pred HHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCC
Q psy16206 80 IESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDD 159 (821)
Q Consensus 80 v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~ 159 (821)
++++++.++||+++++++.+. . .+|.+++.|. +++++++++++|+|++|++||+++++...++++.+...
T Consensus 85 v~~i~~~~~ip~is~~~~~~~---~--~~~~~~~~~~---~~~a~~~l~~~~~w~~vaii~~~d~~~~~~~~~~~~~~-- 154 (389)
T 4gpa_A 85 LTSFCSALHISLITPSFPTEG---E--SQFVLQLRPS---LRGALLSLLDHYEWNCFVFLYDTDRGYSILQAIMEKAG-- 154 (389)
T ss_dssp HHHHHHHTTCEEEECSCCCSS---C--CSSEEECSCC---CHHHHHHHHHHTTCCEEEEEECSTTCSHHHHHHHHHHH--
T ss_pred HHHHHHHhCCCceeccccccc---c--ccCCccccCC---HHHHHHHHHHHcCCcEEEEEEecchhhHHHHHHHHHHH--
Confidence 999999999999998654332 3 3455666665 46799999999999999999999888888888888776
Q ss_pred CCcCCCCCCeEEEEE-cCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccc
Q psy16206 160 DKEIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHT 238 (821)
Q Consensus 160 ~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 238 (821)
..|.++.... ++....|+++.|+++++.++++|++.+...++..++++|+++|+++++++|++++ .....
T Consensus 155 -----~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~----~~~~~ 225 (389)
T 4gpa_A 155 -----QNGWHVSAICVENFNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIAN----LGFKD 225 (389)
T ss_dssp -----TTTCEEEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECS----SBGGG
T ss_pred -----hcCceEEEEeecCCcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeC----ccccc
Confidence 6678887654 5555778999999999999999999999999999999999999999999999988 43444
Q ss_pred cCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCCC--
Q psy16206 239 VDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKPL-- 316 (821)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~-- 316 (821)
.....+.....++++++...++++.+++|.++|++.+....+ .....++.+++++||||+++|+|++++.++...
T Consensus 226 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~---~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~ 302 (389)
T 4gpa_A 226 ISLERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYP---GSETPPKYTSALTYDGVLVMAETFRSLRRQKIDIS 302 (389)
T ss_dssp SCCHHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTST---TTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hhhhhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcc---cCCCChhHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 444445445678899999899999999999999987754422 123457889999999999999999999765332
Q ss_pred ----CCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCcceeccc
Q psy16206 317 ----PTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHSRTV 392 (821)
Q Consensus 317 ----~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~~~~~~ 392 (821)
.....|....+|.+|..|+++|++++|+|+||+|.||+ +|+|.++.|+|++++++++++||.|++..||.+..+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~-~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl~~~~~~ 381 (389)
T 4gpa_A 303 RRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDH-YGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQDR 381 (389)
T ss_dssp CTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCT-TSCBCSCEEEEEEEETTEEEEEEEEETTTEEEECCC-
T ss_pred ccCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECC-CCCCCCCEEEEEEEECCEEEEEEEEECCCCeEECCCC
Confidence 22344556778999999999999999999999999999 9999999999999999999999999999999887654
No 6
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=7.3e-48 Score=422.73 Aligned_cols=361 Identities=22% Similarity=0.441 Sum_probs=289.0
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHH
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNII 80 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v 80 (821)
||||++++++|...+.|+++|+++||++ |++|+++++|++++||..+++++|+|++++|.|||||.+|..+.++
T Consensus 3 i~IG~i~~~sg~~~~~~~~lAv~~iN~~------g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~~~av 76 (376)
T 3hsy_A 3 IQIGGLFPRGADQEYSAFRVGMVQFSTS------EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTI 76 (376)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHTCCS------SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTTHHHH
T ss_pred eeEEEEeCCCCHHHHHHHHHHHHHHhcC------CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhHHHHH
Confidence 6999999999988999999999999988 4699999999887799999999999999999999999999999999
Q ss_pred HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCC
Q psy16206 81 ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDD 160 (821)
Q Consensus 81 ~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~ 160 (821)
+++++.++||+|++++ +. ....+|+||+.|+ ++++++++++++||++|++||+++.+...++.+.+...
T Consensus 77 ~~~~~~~~ip~is~~~-~~----~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~d~~~g~~~~~~~~~~~~--- 145 (376)
T 3hsy_A 77 TSFCGTLHVSFITPSF-PT----DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAA--- 145 (376)
T ss_dssp HHHHHHHTCEEEECSC-CC----CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEECSTTCSHHHHHHHHHHH---
T ss_pred HHHhccCcCceeecCC-CC----cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEEeCchhHHHHHHHHHHhh---
Confidence 9999999999999865 32 2356789999887 89999999999999999999944445555555555544
Q ss_pred CcCCCCCCeEEEEE-cCC----CCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccccccc
Q psy16206 161 KEIRPGRPSVTIRQ-LPP----DTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWIN 235 (821)
Q Consensus 161 ~~~~~~g~~v~~~~-~~~----~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~ 235 (821)
..|.+|.... ++. +..||+++|++|+++++++|++.+...++..+++|++++||..+.|+|++++ .+
T Consensus 146 ----~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~----~~ 217 (376)
T 3hsy_A 146 ----EKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIAN----LG 217 (376)
T ss_dssp ----HHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECS----SB
T ss_pred ----hcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcC----CC
Confidence 4467776554 331 2579999999999999999999999999999999999999999999999988 44
Q ss_pred ccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCC
Q psy16206 236 AHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKP 315 (821)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~ 315 (821)
....++..+.....++++++...++++.+++|.++|+++++..++. .+...++.+++++|||++++++|+++++.+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~--~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~ 295 (376)
T 3hsy_A 218 FTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPG--AHTATIKYTSALTYDAVQVMTEAFRNLRKQRI 295 (376)
T ss_dssp TTSTTGGGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTT--CSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccchHHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCC--CCCcccchhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444444444445678888888888999999999999988654221 11224788999999999999999999975422
Q ss_pred C----CCCCCC--CCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCccee
Q psy16206 316 L----PTPLSC--ENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHS 389 (821)
Q Consensus 316 ~----~~~~~c--~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~~~ 389 (821)
. .....| .+..+|.+|.+|+++|++++|+|++|+++||+ +|++....|+|+++.++++++||.|++..|++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~-~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~~ 374 (376)
T 3hsy_A 296 EISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQ-NGKRINYTINIMELKTNGPRKIGYWSEVDKMVVT 374 (376)
T ss_dssp CCSCCCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCT-TSBBCSCEEEEEEEETTEEEEEEEEETTTEEEEC
T ss_pred ccccCCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECC-CCCCccceEEEEEecCCCceEEEEEcCCCCceec
Confidence 1 235678 55677899999999999999999999999999 9999999999999999999999999999998754
No 7
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=5.4e-46 Score=409.23 Aligned_cols=362 Identities=25% Similarity=0.453 Sum_probs=303.7
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHH
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNII 80 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v 80 (821)
||||+++|++|..++.|+++|+++||+++ +|+++++|+++.|+.++++++|+|+.++|.|||||.+|..+.++
T Consensus 11 ikIG~~~~~sg~~~~~a~~lAv~~iN~~g-------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~S~~~~a~ 83 (384)
T 3saj_A 11 IQIGGLFPNQQSQEHAAFRFALSQLTEPP-------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYERRTVNML 83 (384)
T ss_dssp EEEEEEESCSSSHHHHHHHHHHTTCCSSS-------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCCHHHHHHH
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHHhcCC-------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCCHHHHHHH
Confidence 69999999999999999999999999873 89999999665699999999999999999999999999999999
Q ss_pred HHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCC
Q psy16206 81 ESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDD 160 (821)
Q Consensus 81 ~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~ 160 (821)
+++++.+++|+|+++ .+.. ...+|.+|+.|+ ++.+++++++++||++|++||+++.+...++.+.+...
T Consensus 84 ~~~~~~~~iP~is~~-~~~~----~~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~d~~~g~~~~~~~~~~~~--- 152 (384)
T 3saj_A 84 TSFCGALHVCFITPS-FPVD----TSNQFVLQLRPE---LQEALISIIDHYKWQTFVYIYDADRGLSVLQRVLDTAA--- 152 (384)
T ss_dssp HHHHHHHTCCEEECS-CCCS----SCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEECSTTCSHHHHHHHHHHH---
T ss_pred HHHhccCCCCeEecc-ccCc----CccCceEEeccc---HHHHHHHHHHHCCCcEEEEEEeCchhHHHHHHHHHHhh---
Confidence 999999999999984 3332 356788999987 89999999999999999999965445555555555554
Q ss_pred CcCCCCCCeEEEEE-cCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccccccccccc
Q psy16206 161 KEIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTV 239 (821)
Q Consensus 161 ~~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~ 239 (821)
..|.+|.... ++.+..||+++|++|+++++++|++.+.+.++..+++|++++||..++|+|++++ .+....
T Consensus 153 ----~~g~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~----~~~~~~ 224 (384)
T 3saj_A 153 ----EKNWQVTAVNILTTTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILAN----LGFMDI 224 (384)
T ss_dssp ----HHTCEEEEEEGGGCCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESS----SCGGGS
T ss_pred ----hcCceEEEEEeccCCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEEC----CCcccc
Confidence 4467777554 3445678999999999999999999999999999999999999999999999988 333333
Q ss_pred CcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHhhccCC-C--
Q psy16206 240 DFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKP-L-- 316 (821)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~-~-- 316 (821)
++..+.....++++++.+.++++.+++|.++|+++++...+ ..+...++.+++++|||++++++|+++++.+.. +
T Consensus 225 ~~~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p--~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~~ 302 (384)
T 3saj_A 225 DLNKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHT--RVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISR 302 (384)
T ss_dssp CHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred cHHHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhhccceec
Confidence 44344444567889988888899999999999998865422 112234678899999999999999999986321 1
Q ss_pred -CCCCCCCCC--CCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCCCcceecc
Q psy16206 317 -PTPLSCENP--SSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFGLNHSRT 391 (821)
Q Consensus 317 -~~~~~c~~~--~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~gl~~~~~ 391 (821)
.+...|... .+|.+|.+++++|++++|+|++|+++||+ +|++.+..|+|++++++++++||.|++..|+++..+
T Consensus 303 ~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~-~G~~~~~~~~i~~~~~~g~~~VG~W~~~~gl~~~~~ 379 (384)
T 3saj_A 303 RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNE-KGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAAL 379 (384)
T ss_dssp CCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCT-TSBBCSCCEEEEEEETTEEEEEEEEETTTEEEECCC
T ss_pred CCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCC-CCCcccceEEEEEeccCCcceeEEEcCCCCccccCc
Confidence 456789763 56899999999999999999999999999 999999999999999999999999999999987654
No 8
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=1.3e-41 Score=374.37 Aligned_cols=338 Identities=19% Similarity=0.242 Sum_probs=276.1
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHH-HhhcCeEEEEc-----CCCc
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCN-ATSEGIAAIFG-----PQSI 74 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~-li~~~V~aiiG-----p~~s 74 (821)
||||+++|++ ..+.|+++|+++||++++ ..+++|+++..| +++||.++++.+|+ |++++|.|||| |.|+
T Consensus 6 i~IG~i~~~s--~~~~~~~lAv~~iN~~~~--~~~~~l~~~~~d-~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~~~~~s 80 (384)
T 3qek_A 6 VNIGAVLSTK--KHEQIFREAVNQANKRHF--TRKIQLQATSVT-HRPNAIQMALSVCEDLISSQVYAILVSHPPAPTDH 80 (384)
T ss_dssp EEEEEEESSH--HHHHHHHHHHHHHHHHSC--CSSEEEEEEEEE-CCSSHHHHHHHHHHHTGGGTEEEEEECC-------
T ss_pred EEEeEEeeCc--hHHHHHHHHHHHHhcccc--CCceEEEEEEec-ccCCHHHHHHHHHHHHHHcCceEEEEecCCCCccc
Confidence 6999999999 779999999999999986 668899999999 66999999988777 78889999999 6788
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHH-HH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQ-VL 153 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~-~~ 153 (821)
..+.+++++++.+++|+|+++++++.++++..+||+||+.|++..++++++++++++||++|++|++|+++...+.+ +.
T Consensus 81 ~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~~~~~~ 160 (384)
T 3qek_A 81 LTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLE 160 (384)
T ss_dssp -CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHH
Confidence 89999999999999999999777655566778899999999999999999999999999999999998875443322 22
Q ss_pred HhcCCCCCcCCCCCCe----------------------EEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHH
Q psy16206 154 ENAHDDDKEIRPGRPS----------------------VTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILK 211 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~----------------------v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~ 211 (821)
+... ..|.. ..+..++.+..|+++.|++|+++++++|++.+.+.++..+++
T Consensus 161 ~~~~-------~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~ 233 (384)
T 3qek_A 161 TLLE-------GKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYK 233 (384)
T ss_dssp HHHC---------------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHH
T ss_pred HHHH-------hccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 2222 22221 223344556789999999999999999999999999999999
Q ss_pred HHHHccccCcceEEEEecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccch
Q psy16206 212 QAKEVHLMGDYQNYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKI 291 (821)
Q Consensus 212 ~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 291 (821)
||+++||++++++|+++++ |... ..+.....|+++++.+.++ .
T Consensus 234 ~a~~~g~~~~~~~~i~~~~--~~~~-----~~~~~~~~g~lg~~~~~~~------------------------------~ 276 (384)
T 3qek_A 234 SAAMLDMTGAGYVWLVGER--EISG-----SALRYAPDGIIGLQLINGK------------------------------N 276 (384)
T ss_dssp HHHHTTCSSTTCEEECCSG--GGSG-----GGGSSCCTTCEEEEETTTT------------------------------C
T ss_pred HHHHcCCccCCeEEEEecc--cccc-----ccccccCCccEEEEEcCCC------------------------------c
Confidence 9999999998899999883 2221 2233456788888876542 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCCC-CCCCCCchhHHHhhhhcee-ccceeeEEEeCCCCccceeEEEEEE
Q psy16206 292 EAALMYDAVYLFAAALQSLGERKPL-PTPLSCEN-PSSWQHGLGIGNLMKSITI-DGMTGRINLDSQTGRRNSFSLEFVE 368 (821)
Q Consensus 292 ~a~~~YDAv~~~a~Al~~~~~~~~~-~~~~~c~~-~~~~~~g~~l~~~l~~~~~-~G~tG~i~fd~~~g~~~~~~~~i~~ 368 (821)
.++.+||||+++|+|++++..+... .+...|.. ..+|..+..|.+.+++++| +|++|++.||+ +|++.+..|+|++
T Consensus 277 ~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~-~G~~~~~~~~I~~ 355 (384)
T 3qek_A 277 ESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNE-DGDRKFAQYSIMN 355 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCT-TSCBCSCCEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECC-CCCCCcccEEEEE
Confidence 2688999999999999999866556 66778964 5679999999999999998 99999999999 9999889999999
Q ss_pred EeecceEEEEEEecCCCccee
Q psy16206 369 YVSDQWKVLGTWNTAFGLNHS 389 (821)
Q Consensus 369 ~~~~~~~~vG~w~~~~gl~~~ 389 (821)
++++++++||.|+. ..+.++
T Consensus 356 ~~~~~~~~VG~w~~-~~l~i~ 375 (384)
T 3qek_A 356 LQNRKLVQVGIFNG-SYIIQN 375 (384)
T ss_dssp EETTEEEEEEEECS-SSEEEC
T ss_pred EcCCceEEEEEEeC-CeEeec
Confidence 99999999999993 345443
No 9
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=1.8e-41 Score=379.79 Aligned_cols=362 Identities=14% Similarity=0.163 Sum_probs=290.0
Q ss_pred CcEEEEeCCCc--------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEc
Q psy16206 1 MKIVGIFGPNE--------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFG 70 (821)
Q Consensus 1 i~IG~i~~~~~--------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiG 70 (821)
||||+++|++| ..+..|+++|+++||++ + +++|++|+++++| +++++..+++.+++|+.+ +|.+|||
T Consensus 15 i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g-~l~g~~l~l~~~D-~~~~~~~a~~~a~~li~~~~~v~aviG 91 (433)
T 4f11_A 15 LSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-S-LLRPYFLDLRLYD-TECDNAKGLKAFYDAIKYGPNHLMVFG 91 (433)
T ss_dssp EEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-T-TTTTCEEEEEEEE-CTTCHHHHHHHHHHHHHHSCCCSEEEE
T ss_pred eEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-C-CCCCCEEEEEEec-CCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 68999999999 25889999999999999 5 6889999999999 779999999999999985 8999999
Q ss_pred CCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHH-
Q psy16206 71 PQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYL- 149 (821)
Q Consensus 71 p~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~- 149 (821)
|.||..+.+++++++.+++|+|+++++...+++...++|+||+.|++..++++++++++++||++|++|++++++...+
T Consensus 92 ~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~ 171 (433)
T 4f11_A 92 GVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVR 171 (433)
T ss_dssp CCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhHHHH
Confidence 9999999999999999999999997765555666678999999999999999999999999999999999998844444
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEE-EcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEe
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIR-QLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILS 228 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~ 228 (821)
+.+.+... ..|++|... .++ .|+.++|++|+++++++|++.+...++..+++|++++|+..++++|+.+
T Consensus 172 ~~~~~~~~-------~~g~~v~~~~~~~---~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 241 (433)
T 4f11_A 172 NDLTGVLY-------GEDIEISDTESFS---NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIP 241 (433)
T ss_dssp HHHHHHSS-------SSSCEEEEEEEES---SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEE
T ss_pred HHHHHHHH-------HcCceEEEEeccC---cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEc
Confidence 44444554 567887654 454 4899999999999999999999999999999999999999888999998
Q ss_pred ccc--ccccc-----c--ccCcccccCCceeeEEEEeecCC--------ChhHHHhhhhhhhh-hhcccccccccccccc
Q psy16206 229 LTS--YWINA-----H--TVDFQDFQPGYANITTVRMINPT--------NPHIRSIMNGWIYE-ENERGRSLNVRAETVK 290 (821)
Q Consensus 229 ~~~--~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~ 290 (821)
++. .|... . ............|++++..+.+. ++..++|.++|+++ ++ ..++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~----------~~~~ 311 (433)
T 4f11_A 242 GWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG----------VGPS 311 (433)
T ss_dssp SCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT----------SCCC
T ss_pred CcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC----------CCcc
Confidence 841 12210 0 00111112234677777765432 24478899999887 32 2367
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCC--CCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEE
Q psy16206 291 IEAALMYDAVYLFAAALQSLGERKPL-PTPLSCE--NPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFV 367 (821)
Q Consensus 291 ~~a~~~YDAv~~~a~Al~~~~~~~~~-~~~~~c~--~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~ 367 (821)
.+++++||||+++++|+++++..... .....|. ....|.++..++++|++++|+|++|+++| + +|++. ..|.|+
T Consensus 312 ~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~-~Gd~~-~~~~I~ 388 (433)
T 4f11_A 312 KFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-R-NGERM-GTIKFT 388 (433)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-E-TTEEE-CEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-e-cCcee-eeEEEE
Confidence 88899999999999999998642100 0000111 11235578999999999999999999999 7 99987 899999
Q ss_pred EEeecceEEEEEEecCC-Ccce
Q psy16206 368 EYVSDQWKVLGTWNTAF-GLNH 388 (821)
Q Consensus 368 ~~~~~~~~~vG~w~~~~-gl~~ 388 (821)
++++++++.||.|++.. .|.+
T Consensus 389 ~~~~g~~~~VG~~~~~~~~l~~ 410 (433)
T 4f11_A 389 QFQDSREVKVGEYNAVADTLEI 410 (433)
T ss_dssp EEETTEEEEEEEEETTTTEEEE
T ss_pred EEECCceEEEEEEECCCCeEEE
Confidence 99999999999999753 3443
No 10
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=1.6e-40 Score=372.43 Aligned_cols=359 Identities=13% Similarity=0.180 Sum_probs=286.9
Q ss_pred CcEEEEeCCCc------hHHHH-HHHHHHHHHhcCCCCCCCceEEEEEEEEec----CCChhHHHHHHHHHhhc-CeEEE
Q psy16206 1 MKIVGIFGPNE------EEVAT-AFEIAVRRINKDFKALPPDIILEPIVQHVE----NYDSLHTAKLMCNATSE-GIAAI 68 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~-a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~----~~~~~~a~~~a~~li~~-~V~ai 68 (821)
|+||+++|++| ....+ |+++|+++||++++ +++|++|+++++|+. +|++..++..+++++.+ +|.||
T Consensus 3 i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~gg-il~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~av 81 (435)
T 1dp4_A 3 LTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPD-LLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF 81 (435)
T ss_dssp EEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTT-SSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEE
T ss_pred eEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCC-CCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceEE
Confidence 68999999987 34455 99999999999999 888999999999952 35566888888888866 99999
Q ss_pred EcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEE------Eec
Q psy16206 69 FGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTII------YET 142 (821)
Q Consensus 69 iGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii------~~~ 142 (821)
|||.||..+.+++++++.+++|+|+++++...++++..+||+||+.|++..++++++++++++||++|++| +++
T Consensus 82 iG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~~ 161 (435)
T 1dp4_A 82 LGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDD 161 (435)
T ss_dssp ECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSC
T ss_pred ECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCCc
Confidence 99999999999999999999999999877555566667999999999999999999999999999999999 555
Q ss_pred CCchhHHHHHHHhcCCCCCcCCC-CCCeEEEEE-cCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 143 HDNLVYLQQVLENAHDDDKEIRP-GRPSVTIRQ-LPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~~~~-~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
+++...++.+.++.. . .|++|.... ++.+..|+++.+++|++ ++|+|++.+...++..++++++++|+.+
T Consensus 162 ~~~g~~~~~~~~~~~-------~~~g~~v~~~~~~~~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~ 233 (435)
T 1dp4_A 162 RPCFFIVEGLYMRVR-------ERLNITVNHQEFVEGDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTG 233 (435)
T ss_dssp CHHHHHHHHHHHHHH-------HHHCCEEEEEEECTTCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCT
T ss_pred chHHHHHHHHHHHHH-------hhcCeEEEEEEEecCchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCC
Confidence 554456666665554 3 577887654 44557889999999998 9999999999999999999999999988
Q ss_pred cceEEEEecccccccccc----------------cCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccc
Q psy16206 221 DYQNYILSLTSYWINAHT----------------VDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNV 284 (821)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 284 (821)
+.+.|+.++. ++... ...+.+.....++.++....++++.+++|.++|+++++.+. .+..
T Consensus 234 ~~~~~i~~~~---~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~ 309 (435)
T 1dp4_A 234 EDYVFFHLDV---FGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKF-NFTV 309 (435)
T ss_dssp TTCEEEEECT---TCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHH-CCCC
T ss_pred CCEEEEEEec---ccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCC-Cccc
Confidence 7799999873 22111 00111222245777666666678889999999988764321 0010
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEE
Q psy16206 285 RAETVKIEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSL 364 (821)
Q Consensus 285 ~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~ 364 (821)
....++.+++++||||+++++|++++.. | .+.+.++.+|+++|++++|+|++|++.||+ +|++. ..|
T Consensus 310 ~~~~~~~~~~~~ydav~~~a~Al~~~~~---------~--~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~-~g~~~-~~~ 376 (435)
T 1dp4_A 310 EDGLKNIIPASFHDGLLLYVQAVTETLA---------Q--GGTVTDGENITQRMWNRSFQGVTGYLKIDR-NGDRD-TDF 376 (435)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHHHHHHHH---------T--TCCTTCHHHHHHTTTTEEEEETTEEEEECT-TSBBC-CCE
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH---------c--CCCCCCHHHHHHHHhCceeeccceeEEECC-CCCcc-cee
Confidence 1113567889999999999999999952 1 112467889999999999999999999999 99987 689
Q ss_pred EEEEE--eecceEEEEEEecCCC
Q psy16206 365 EFVEY--VSDQWKVLGTWNTAFG 385 (821)
Q Consensus 365 ~i~~~--~~~~~~~vG~w~~~~g 385 (821)
.|+++ .++.++.||.|++..+
T Consensus 377 ~i~~~~~~~g~~~~vg~~~~~~~ 399 (435)
T 1dp4_A 377 SLWDMDPETGAFRVVLNYNGTSQ 399 (435)
T ss_dssp EEEEECTTTCCEEEEEEECTTTC
T ss_pred EEEEecCCCCcEEEEEEecCCCc
Confidence 99999 5567999999998764
No 11
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=9.5e-40 Score=366.60 Aligned_cols=358 Identities=16% Similarity=0.221 Sum_probs=277.9
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCC---CCCceEEEEEEEEecCCChhHHHHHHHHHh----hcCeEE
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKA---LPPDIILEPIVQHVENYDSLHTAKLMCNAT----SEGIAA 67 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~---ll~~~~l~~~~~D~~~~~~~~a~~~a~~li----~~~V~a 67 (821)
||||+++|++| .....|+++|+++||++++. +++|++|+++++| +++++. ++..+.+++ .++|.|
T Consensus 10 i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D-~~~~~~-a~~~~~~~~~~~~~~~v~a 87 (441)
T 1jdp_A 10 IEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYED-SDCGNR-ALFSLVDRVAAARGAKPDL 87 (441)
T ss_dssp EEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEE-CTTSTH-HHHHHHHHHHHTTTCCCSE
T ss_pred eEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEec-CCCchh-HHHHHHHHHHhhccCCceE
Confidence 68999999988 46788999999999998741 5789999999999 668887 666555544 339999
Q ss_pred EEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCC-CCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCch
Q psy16206 68 IFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPT-NGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNL 146 (821)
Q Consensus 68 iiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~-~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~ 146 (821)
||||.||..+.+++++++.+++|+|+++++...++++. .+||+||+.|++..++++++++++++||++|++|++|+++.
T Consensus 88 iiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~~~g 167 (441)
T 1jdp_A 88 ILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLE 167 (441)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECCSSS
T ss_pred EECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcCCcc
Confidence 99999999999999999999999999987765556665 79999999999999999999999999999999999988743
Q ss_pred -h---HHHHHHHhcCCCCCcCCCCCCeEEEEE-cCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 147 -V---YLQQVLENAHDDDKEIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 147 -~---~~~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
. .++.+.+.+. ..|++|.... ++.+..|+...+++|+ +++|+|++.+...++..++++++++||.++
T Consensus 168 ~~~~~~~~~~~~~~~-------~~g~~v~~~~~~~~~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 168 RNCYFTLEGVHEVFQ-------EEGLHTSIYSFDETKDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp CHHHHHHHHHHHHHH-------HHTCEEEEEEECTTSCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred cchHHHHHHHHHHHH-------hcCcEEEEEEecCCcccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCC
Confidence 3 4444444443 4467776654 4445678999999999 999999999999999999999999999988
Q ss_pred ceEEEEeccc--------ccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhH
Q psy16206 222 YQNYILSLTS--------YWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEA 293 (821)
Q Consensus 222 ~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a 293 (821)
.|.|+.++.. .|.. .............++.++.....+.+.+++|.++|++++.... .. ....++.++
T Consensus 240 ~~v~i~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~--~~-~~~~~~~~~ 315 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKR-GDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQG--LN-MEDYVNMFV 315 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCC-SSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTT--CC-CCSSCCHHH
T ss_pred CEEEEEEeccccccccCCCCcc-CCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCC--CC-ccchhhhHH
Confidence 8999887710 1211 1000000001123455565666778999999999988743210 01 011245678
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEee--
Q psy16206 294 ALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVS-- 371 (821)
Q Consensus 294 ~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~-- 371 (821)
+.+||||+++|+|++++... . ..+.++.+|+++|++++|+|++|++.||+ +|++. ..|+|++++.
T Consensus 316 ~~~YdAv~~~A~Al~~~~~~---------~--~~~~~~~~l~~~l~~~~f~g~~G~v~fd~-~Gd~~-~~~~I~~~~~~~ 382 (441)
T 1jdp_A 316 EGFHDAILLYVLALHEVLRA---------G--YSKKDGGKIIQQTWNRTFEGIAGQVSIDA-NGDRY-GDFSVIAMTDVE 382 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---------T--CCTTCHHHHHHHHSSEEEEETTEEEEECT-TSBBC-CEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHh---------C--CCCCCHHHHHHHHhCCeeECCccceEECC-CCCcc-ccEEEEecccCC
Confidence 99999999999999999631 1 11467889999999999999999999999 99987 8899999863
Q ss_pred -cceEEEEEEecCCC
Q psy16206 372 -DQWKVLGTWNTAFG 385 (821)
Q Consensus 372 -~~~~~vG~w~~~~g 385 (821)
+.++.||.|++..+
T Consensus 383 ~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 383 AGTQEVIGDYFGKEG 397 (441)
T ss_dssp TTEEEEEEEEETTTT
T ss_pred CCceEEEEEEcCCCC
Confidence 55999999999765
No 12
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=2.9e-38 Score=342.98 Aligned_cols=339 Identities=14% Similarity=0.174 Sum_probs=265.3
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEc-CCCcchHH
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFG-PQSIENRN 78 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiG-p~~s~~~~ 78 (821)
+.||++|..+.. +.+++-|++..|.-. +..+|+.++...+.+||..+.+.+|+++.. +|.|||| |.++..+.
T Consensus 5 ~~v~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~~~a~ 78 (364)
T 3qel_B 5 IGIAVILVGTSD--EVAIKDAHEKDDFHH----LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAI 78 (364)
T ss_dssp EEEEEEEESSCC--HHHHTC-------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSCCTHH
T ss_pred eEEEEEEcccch--hhhhccccCcccccc----CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCCchHH
Confidence 469999966554 889999999999653 357888888887889999999999999986 8989875 55555565
Q ss_pred H--HHHHhccCCCceeeeccCCC-CCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHh
Q psy16206 79 I--IESMCQMFDIPHVEAFWDPN-KYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLEN 155 (821)
Q Consensus 79 ~--v~~i~~~~~iP~is~~~~~~-~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~ 155 (821)
+ ++.+|+.+++|+|+++++.+ .++++..+||++|+.|++..|++++++++++|||++|++||+|+.+...+.+.+++
T Consensus 79 a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~~g~~~~~~~l~~ 158 (364)
T 3qel_B 79 AQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRS 158 (364)
T ss_dssp HHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESCTTHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCCccHHHHHHHHHH
Confidence 6 99999999999999987754 45777889999999999999999999999999999999999987666667666665
Q ss_pred c--CCCCCcCCCCCCeEEE---EEcCCCCCChHHHH-HHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEec
Q psy16206 156 A--HDDDKEIRPGRPSVTI---RQLPPDTDDYRPLL-KEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 156 ~--~~~~~~~~~~g~~v~~---~~~~~~~~d~~~~l-~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
. + .++++.+ ..+.++..+++..+ ++|+++++++||+.|..+.+..++++|.++||++++|+||+++
T Consensus 159 ~~~~--------~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t~ 230 (364)
T 3qel_B 159 TIEN--------SFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPS 230 (364)
T ss_dssp HHHT--------CSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEECH
T ss_pred Hhhc--------cccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEec
Confidence 5 3 1234332 24455567888899 7999999999999999999999999999999999999999988
Q ss_pred ccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy16206 230 TSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQS 309 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~ 309 (821)
.+....+..+ .....|++++++.. |++ ...+++||||+++|+|+++
T Consensus 231 ----~~~~~~~~~~-~~~~~g~~~~~~~~------------W~~-----------------~~~~~~yDaV~~~A~A~~~ 276 (364)
T 3qel_B 231 ----LVAGDTDTVP-SEFPTGLISVSYDE------------WDY-----------------GLPARVRDGIAIITTAASD 276 (364)
T ss_dssp ----HHHCSTTCCC-TTSCTTCEECCBCT------------TTS-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred ----ccccCccccc-ccCCCceEEEeecc------------chh-----------------hHHHHHHHHHHHHHHHHHH
Confidence 3222222111 11235777765533 321 2357899999999999999
Q ss_pred hhccC-CC-CCCCCCCCCC--CCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe-ecceEEEEEEecCC
Q psy16206 310 LGERK-PL-PTPLSCENPS--SWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV-SDQWKVLGTWNTAF 384 (821)
Q Consensus 310 ~~~~~-~~-~~~~~c~~~~--~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~~~ 384 (821)
+.++. .. .+.++|.... .|.+|..|+++|++++|+|+ ++.||+ +|+|.++.|+|++++ ++++++||.|+ ..
T Consensus 277 ~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~-~G~~~~~~~~Iinl~~~~~~~~VG~W~-~~ 352 (364)
T 3qel_B 277 MLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSE-DGYQMHPKLVIILLNKERKWERVGKWK-DK 352 (364)
T ss_dssp HHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCT-TSSBSSCCEEEEEECTTSCEEEEEEEC-SS
T ss_pred HHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECC-CCCcccceEEEEEEcCCCCcEEEEEEC-CC
Confidence 87643 34 6688998754 58899999999999999998 999999 999999999999998 67899999999 56
Q ss_pred Ccceecc
Q psy16206 385 GLNHSRT 391 (821)
Q Consensus 385 gl~~~~~ 391 (821)
+|+++..
T Consensus 353 ~L~~~~~ 359 (364)
T 3qel_B 353 SLQMKYY 359 (364)
T ss_dssp CEEESCS
T ss_pred eEEeCcC
Confidence 7887643
No 13
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=4.3e-37 Score=354.18 Aligned_cols=369 Identities=14% Similarity=0.163 Sum_probs=280.1
Q ss_pred CcEEEEeCCCch----------------HHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh--
Q psy16206 1 MKIVGIFGPNEE----------------EVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-- 62 (821)
Q Consensus 1 i~IG~i~~~~~~----------------~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-- 62 (821)
|+||+++|++|. ....|+++|+|+||++++ +++|++|+++++| +|+++..+++.+.+++.
T Consensus 15 i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~-llpg~~L~~~i~D-~~~~~~~a~~~a~~~l~~~ 92 (555)
T 2e4u_A 15 LVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNY-LLPGVKLGVHILD-TCSRDTYALEQSLEFVRAS 92 (555)
T ss_dssp EEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTT-SSTTCCEEEEEEE-CTTCHHHHHHHHHHHHHTT
T ss_pred EEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCC-CCCCCeEEEEEEE-CCCChHHHHHHHHHHHhCc
Confidence 689999998762 457899999999999999 8899999999999 77999999999998883
Q ss_pred ----------------------c-CeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhh
Q psy16206 63 ----------------------E-GIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHL 119 (821)
Q Consensus 63 ----------------------~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~ 119 (821)
+ +|.|||||.+|..+.+++++++.+++|+|+++++.+.++++..+||+||+.|++..
T Consensus 93 ~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~ 172 (555)
T 2e4u_A 93 LTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFY 172 (555)
T ss_dssp C--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHH
T ss_pred CcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHH
Confidence 4 89999999999999999999999999999998776655777789999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEEecCCchhH-HHHHHHhcCCCCCcCCCCCCeEEEE-EcCC--CCCChHHHHHHhhc-CCC
Q psy16206 120 ISKGISVIINDMDWDTFTIIYETHDNLVY-LQQVLENAHDDDKEIRPGRPSVTIR-QLPP--DTDDYRPLLKEIKN-SSE 194 (821)
Q Consensus 120 ~~~al~~~~~~~~w~~v~ii~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~--~~~d~~~~l~~lk~-~~~ 194 (821)
++.++++++++|||++|++|++|+++... ++.+.+++. ..|++|... .++. +..|+.+.+++|++ +++
T Consensus 173 ~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~-------~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a 245 (555)
T 2e4u_A 173 QAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEAR-------LRNICIATAEKVGRSNIRKSYDSVIRELLQKPNA 245 (555)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHH-------TTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHH-------HCCccEEEEEEeCCCCChHHHHHHHHHHhccCCC
Confidence 99999999999999999999999885444 444444554 567888754 5654 45679999999965 799
Q ss_pred cEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhh-----
Q psy16206 195 SHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMN----- 269 (821)
Q Consensus 195 ~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~----- 269 (821)
++||+.+...++..+++++.++|+ ++.|+.+++ | +..............|.+++.....+.+.+++|..
T Consensus 246 ~vIi~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~--~-~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~ 319 (555)
T 2e4u_A 246 RVVVLFMRSDDSRELIAAANRVNA---SFTWVASDG--W-GAQESIVKGSEHVAYGAITLELASHPVRQFDRYFQSLNPY 319 (555)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTC---CCEEEECTT--T-TTCGGGTTTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTT
T ss_pred CEEEEEcCHHHHHHHHHHHHHhcC---CeEEEEecc--c-cccchhhccchhhcceEEEEEeccCCCCcHHHHHhhCCcc
Confidence 999999999999999999999997 578998874 3 22111111111123577777766555555555443
Q ss_pred ----------hhhhhhhccc---------cccccc----ccccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q psy16206 270 ----------GWIYEENERG---------RSLNVR----AETVKIEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPS 326 (821)
Q Consensus 270 ----------~~~~~~~~~~---------~~~~~~----~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~ 326 (821)
.|+++++-.. |..... ...+..++..+||||+++|+||+++...........|...
T Consensus 320 ~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~~~- 398 (555)
T 2e4u_A 320 NNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAM- 398 (555)
T ss_dssp TCTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGG-
T ss_pred cCCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCCCcccccc-
Confidence 3444443110 110000 0014467889999999999999998742111111234332
Q ss_pred CCCCchhHHH-hhhhceec------cceee-EEEeCCCCccceeEEEEEEEee--c--ceEEEEEEecCCCccee
Q psy16206 327 SWQHGLGIGN-LMKSITID------GMTGR-INLDSQTGRRNSFSLEFVEYVS--D--QWKVLGTWNTAFGLNHS 389 (821)
Q Consensus 327 ~~~~g~~l~~-~l~~~~~~------G~tG~-i~fd~~~g~~~~~~~~i~~~~~--~--~~~~vG~w~~~~gl~~~ 389 (821)
...++.+|++ +|++++|+ |++|+ +.||+ +|++. ..|+|+++.. + .+++||.|++ .|.++
T Consensus 399 ~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~-~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~--~l~i~ 469 (555)
T 2e4u_A 399 KILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDT-FGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE--TLSLD 469 (555)
T ss_dssp TSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCT-TSCCC-CCEEEEEEECTTSSCEEEEEEEESS--SEECC
T ss_pred CCCCcccccHHhHhceeecccccccCCCCCeEEEcC-CCCcc-ceEEEEEEEecCCcEEEEEEEEecc--eEEEe
Confidence 2356788998 99999999 99997 99999 99986 7899999952 3 3899999995 55543
No 14
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=342.69 Aligned_cols=369 Identities=13% Similarity=0.142 Sum_probs=283.2
Q ss_pred CcEEEEeCCC----------------chHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-
Q psy16206 1 MKIVGIFGPN----------------EEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE- 63 (821)
Q Consensus 1 i~IG~i~~~~----------------~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~- 63 (821)
|.||++||+. |.+...|+++|+|+||++++ +|+|++|+++++| +|+++..+++++.+|+..
T Consensus 14 i~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~-lLpg~~L~~~i~D-~~~~~~~a~~~~~~ll~~~ 91 (479)
T 3sm9_A 14 LVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDY-LLPGVKLGVHILD-TCSRDTYALEQSLEFVRAS 91 (479)
T ss_dssp EEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSS-SSTTCCEEEEEEE-CTTCHHHHHHHHHHHHHTC
T ss_pred EEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCc-cCCCCeEeEEEEe-cCCChHHHHHHHHHHHhCC
Confidence 5789999984 24567899999999999999 8999999999999 889999999999999974
Q ss_pred ------------------------CeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhh
Q psy16206 64 ------------------------GIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHL 119 (821)
Q Consensus 64 ------------------------~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~ 119 (821)
+|.|||||.+|..+.+++++++.+++|+|+++++.+.++++..+||+||+.|++..
T Consensus 92 ~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~ 171 (479)
T 3sm9_A 92 LTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFY 171 (479)
T ss_dssp C-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHH
T ss_pred CccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHH
Confidence 69999999999999999999999999999998776666777789999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEEecCCc-hhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHH-HHhhcCCC
Q psy16206 120 ISKGISVIINDMDWDTFTIIYETHDN-LVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLL-KEIKNSSE 194 (821)
Q Consensus 120 ~~~al~~~~~~~~w~~v~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l-~~lk~~~~ 194 (821)
++.+++++++++||++|++|++|+++ ...++.+.+++. ..|++|... .++.. ..|+...+ +.|+++++
T Consensus 172 ~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~-------~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a 244 (479)
T 3sm9_A 172 QAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEAR-------LRNISIATAEKVGRSNIRKSYDSVIRELLQKPNA 244 (479)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHH-------TTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHH-------HCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998874 444455555555 567888754 56543 46788888 67888999
Q ss_pred cEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhh--
Q psy16206 195 SHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWI-- 272 (821)
Q Consensus 195 ~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-- 272 (821)
++||+.+...++..+++++.++|+. ..||.+++ ++..............|.+++.....+.+.+++|.+...
T Consensus 245 ~vIi~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~---w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~ 318 (479)
T 3sm9_A 245 RVVVLFMRSDDSRELIAAASRANAS---FTWVASDG---WGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPY 318 (479)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCC---CEEEECTT---TTTCHHHHTTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTT
T ss_pred eEEEEEcChHHHHHHHHHHHHhCCE---EEEEEech---hhcCccccccccccCceEEEEEeccCCCcchhhHhhccCcC
Confidence 9999999999999999999999986 68999885 332111111122335788999988888998888876542
Q ss_pred -------------hhhh-c--------ccccccccc----cccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q psy16206 273 -------------YEEN-E--------RGRSLNVRA----ETVKIEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPS 326 (821)
Q Consensus 273 -------------~~~~-~--------~~~~~~~~~----~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~ 326 (821)
..++ . ..|...... ..........||||+++|+||+++...........|....
T Consensus 319 ~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~ 398 (479)
T 3sm9_A 319 NNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMK 398 (479)
T ss_dssp TCTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCHHHH
T ss_pred cCCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCC
Confidence 2221 0 001111000 0111234679999999999999986421111223453321
Q ss_pred CCCCchhHH-Hhhhhceeccc------e-eeEEEeCCCCccceeEEEEEEEeec----ceEEEEEEecCCCccee
Q psy16206 327 SWQHGLGIG-NLMKSITIDGM------T-GRINLDSQTGRRNSFSLEFVEYVSD----QWKVLGTWNTAFGLNHS 389 (821)
Q Consensus 327 ~~~~g~~l~-~~l~~~~~~G~------t-G~i~fd~~~g~~~~~~~~i~~~~~~----~~~~vG~w~~~~gl~~~ 389 (821)
..++.+|+ .+|++++|.+. + +.+.||+ +|++. ..|+|+++... .+++||.|+ ..|.++
T Consensus 399 -~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~-~G~~~-~~YdI~n~~~~~~~~~~~~VG~~~--~~l~i~ 468 (479)
T 3sm9_A 399 -ILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDT-FGDGM-GRYNVFNFQNVGGKYSYLKVGHWA--ETLSLD 468 (479)
T ss_dssp -SCCHHHHHHHTGGGCCEECTTC-----CCEECCCT-TCBCC-CCEEEEEEEESSSCEEEEEEEEES--SSEEEC
T ss_pred -CcChHHHHHHHhcceeeccccCccccCCCeEEECC-CCCcc-cceEEEEEEECCCcEEEEEEEEEe--ceEEEe
Confidence 24567899 99999999988 4 4899999 99986 78999998742 368999998 345544
No 15
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=4e-36 Score=331.18 Aligned_cols=348 Identities=10% Similarity=0.083 Sum_probs=281.2
Q ss_pred CcEEEEeCCCc-----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCc
Q psy16206 1 MKIVGIFGPNE-----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSI 74 (821)
Q Consensus 1 i~IG~i~~~~~-----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s 74 (821)
|+||+++|++| .....|+++|++++|++++ +++|++|++++.| +++++..+.+.+++|+.+ +|.+||||.+|
T Consensus 6 i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~gg-i~Gg~~i~l~~~D-~~~~~~~~~~~~~~li~~~~v~aiiG~~~s 83 (387)
T 3i45_A 6 IRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGG-LLGGRPLEVISRD-DGGDPGKAVTAAQELLTRHGVHALAGTFLS 83 (387)
T ss_dssp EEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTC-BTTTBCEEEEEEE-CTTCHHHHHHHHHHHHHHHCCSEEEECCSH
T ss_pred EEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCC-CCCCcceEEEEec-CCCCHHHHHHHHHHHHHhcCCEEEECCcch
Confidence 68999999988 4578999999999999999 6766999999999 669999999999999997 99999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc----hhHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN----LVYLQ 150 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~----~~~~~ 150 (821)
..+.+++++++..+||+|++.++...+++...++|+||+.|++..++.++++++.++||++|++|++++++ ...++
T Consensus 84 ~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~ 163 (387)
T 3i45_A 84 HVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARFK 163 (387)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHHH
Confidence 99999999999999999998665443344557899999999999999999999999999999999987764 33444
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEE-EcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEec
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIR-QLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~-~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
+.+++.+ . |..+... .++.+..|+.+.+++|++.++++|++.+.+.++..++++++++|+... .++++.
T Consensus 164 ~~l~~~~-------~-g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~ 233 (387)
T 3i45_A 164 ELLLAAR-------P-EVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSM 233 (387)
T ss_dssp HHHHHHC-------T-TCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEE
T ss_pred HHHHHhC-------C-CcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEee
Confidence 4555442 1 4565544 566678899999999999999999999999999999999999999644 344332
Q ss_pred ccccccccccCccccc-CCceeeEEEE--eecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHH
Q psy16206 230 TSYWINAHTVDFQDFQ-PGYANITTVR--MINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAA 306 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~A 306 (821)
. +.+.. .+..+. ....|+.... ....+++..++|.++|+++++.. |+.+++.+|||++++++|
T Consensus 234 ~--~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----------p~~~~~~~Yda~~~~a~A 299 (387)
T 3i45_A 234 L--TGEPE--YLNPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWKED----------PFVGSLVGYNTLTAMAVA 299 (387)
T ss_dssp E--EESHH--HHGGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHSSC----------CCHHHHHHHHHHHHHHHH
T ss_pred c--CCChH--HHHHhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHCCC----------CCcHHHHHHHHHHHHHHH
Confidence 1 01111 111111 1223444332 23357889999999999988433 678899999999999999
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe-ecceEEEEEEecCCC
Q psy16206 307 LQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV-SDQWKVLGTWNTAFG 385 (821)
Q Consensus 307 l~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~~~g 385 (821)
+++++ ..+++.++++|++++|+|++|+++|++ ++++......|.++. .++...++.|.+..|
T Consensus 300 l~~ag----------------~~~~~~v~~al~~~~~~g~~G~i~f~~-~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~ 362 (387)
T 3i45_A 300 FEKAG----------------GTESETLVETLKDMAFSTPMGPLSFRA-SDHQSTMGAWVGRTALRDGKGVMVDWRYVDG 362 (387)
T ss_dssp HHHHT----------------SCCHHHHHHHTTTCEEEETTEEEEBCT-TTCBBCCCEEEEEEEEETTEEEEEEEEEECG
T ss_pred HHHhC----------------CCCHHHHHHHHhcCCCcCCCCCeEEcC-CCCccccceeEEEEEeeCCceeEEeeEEeCc
Confidence 99998 578899999999999999999999998 677766778888876 677899999999888
Q ss_pred cceecc
Q psy16206 386 LNHSRT 391 (821)
Q Consensus 386 l~~~~~ 391 (821)
..+..+
T Consensus 363 ~~~~p~ 368 (387)
T 3i45_A 363 GSVLPP 368 (387)
T ss_dssp GGGSCC
T ss_pred hhcCCC
Confidence 876544
No 16
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=5.6e-37 Score=346.53 Aligned_cols=372 Identities=14% Similarity=0.208 Sum_probs=260.8
Q ss_pred CcEEEEeCCCc----------------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh--
Q psy16206 1 MKIVGIFGPNE----------------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-- 62 (821)
Q Consensus 1 i~IG~i~~~~~----------------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-- 62 (821)
|+||+++|+++ .+...|+++|+|+||++++ +|+|++|+++++| +|+++..+++.+.+++.
T Consensus 17 i~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~-lLpn~~L~~~i~D-~~~~~~~a~~~a~~ll~~~ 94 (481)
T 3mq4_A 17 VTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPN-LLPNVTLGARILD-TCSRDTYALEQSLTFVQAL 94 (481)
T ss_dssp EEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSS-SSSSCCEEEEEEE-CTTCHHHHHHHHGGGGGGG
T ss_pred EEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCC-cCCCceEEEEEEe-CCCChHHHHHHHHHHHhCC
Confidence 68999999876 2456899999999999999 8999999999999 88999999999999886
Q ss_pred ---------------------cCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHH
Q psy16206 63 ---------------------EGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLIS 121 (821)
Q Consensus 63 ---------------------~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~ 121 (821)
++|.|||||.+|..+.+++++++.+++|+|+++++.+.++++..+||+||+.|++..++
T Consensus 95 ~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~ 174 (481)
T 3mq4_A 95 IQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQA 174 (481)
T ss_dssp SCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHH
T ss_pred cccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHH
Confidence 47999999999999999999999999999999887666677788999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEEecCCchhHH-HHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CC--ChHHHHHHhh-cCCC
Q psy16206 122 KGISVIINDMDWDTFTIIYETHDNLVYL-QQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TD--DYRPLLKEIK-NSSE 194 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~--d~~~~l~~lk-~~~~ 194 (821)
++++++++++||++|++|++|+++.... +.+.++.. +..|++|... .++.. .. |+...+++|+ ++++
T Consensus 175 ~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~------~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a 248 (481)
T 3mq4_A 175 QAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISK------EAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNS 248 (481)
T ss_dssp HHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---------CCCEECCCCCCCCC------CCSHHHHCCCCC---
T ss_pred HHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHH------HhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCC
Confidence 9999999999999999999988854444 44444443 1257888754 45433 33 8999999998 5799
Q ss_pred cEEEEeCChhHHHHHHHHHHHccccCcceEEEEecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhh--
Q psy16206 195 SHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWI-- 272 (821)
Q Consensus 195 ~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-- 272 (821)
++||+.+...++..++++++++|+.+ .+.||.+++ ++..............|.+++.....+.+.+++|++.+.
T Consensus 249 ~vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~---w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~ 324 (481)
T 3mq4_A 249 RAVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDS---WGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLE 324 (481)
T ss_dssp -CEEECCCSSHHHHHC-----------CCCEEEC--------------------CCCEEEEECCCCCHHHHHHHHTCCTT
T ss_pred EEEEEEEChHHHHHHHHHHHHccCCc-ceEEEEECc---cccccccccccchhhccEEEEecCcCccccHHHHhhcCCcC
Confidence 99999999999999999999999975 368999874 332211111122335788888888888999988876542
Q ss_pred -------------hhhhc-------------cccccccccc-----ccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy16206 273 -------------YEENE-------------RGRSLNVRAE-----TVKIEAALMYDAVYLFAAALQSLGERKPLPTPLS 321 (821)
Q Consensus 273 -------------~~~~~-------------~~~~~~~~~~-----~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~ 321 (821)
..+.- ..|....... .........||||+++|+||+++..+........
T Consensus 325 ~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~ 404 (481)
T 3mq4_A 325 NNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGV 404 (481)
T ss_dssp TCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC----C
T ss_pred cCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 11110 0011111000 0113445799999999999999864211111234
Q ss_pred CCCCCCCCCchhHHHhhhhceecccee-eEEEeCCCCccceeEEEEEEEee--c---ceEEEEEEecCCCccee
Q psy16206 322 CENPSSWQHGLGIGNLMKSITIDGMTG-RINLDSQTGRRNSFSLEFVEYVS--D---QWKVLGTWNTAFGLNHS 389 (821)
Q Consensus 322 c~~~~~~~~g~~l~~~l~~~~~~G~tG-~i~fd~~~g~~~~~~~~i~~~~~--~---~~~~vG~w~~~~gl~~~ 389 (821)
|..... .++.+|+++|++++|.+.+| .+.||+ +|++. ..|+|+++.. + .+++||.|+. .|.++
T Consensus 405 c~~~~~-~~~~qL~~~Lk~v~F~~~~G~~v~fd~-~Gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~~--~l~i~ 473 (481)
T 3mq4_A 405 CPEMEQ-AGGKKLLKYIRNVNFNGSAGTPVMFNK-NGDAP-GRYDIFQYQTTNTSNPGYRLIGQWTD--ELQLN 473 (481)
T ss_dssp CHHHHT-SCHHHHHHHHHTCEEECTTSSEEECCT-TSCCC-CEEEEEEEC-----CCCEEEEEEEET--TEEEE
T ss_pred CCCCCC-cCHHHHHHHHhcceeecCCCCEEEECC-CCCCc-eeEEEEEEEECCCCcEEEEEEEEEcC--ccEec
Confidence 533222 35678999999999999999 899999 99987 7899999862 2 4689999983 45444
No 17
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=3.3e-35 Score=321.57 Aligned_cols=328 Identities=12% Similarity=0.064 Sum_probs=264.6
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
||||+++|+|| +.+++|+++|++++| ++ +.|++|+++++|+.++||..+++.+++|+.+ +|.+||||.+
T Consensus 6 IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--gg--i~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~~~ 81 (371)
T 4f06_A 6 IKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NK--VAGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGLYF 81 (371)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SE--ETTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEECCS
T ss_pred EEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CC--CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 79999999999 668899999999999 45 5689999999995556999999999999987 9999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhH----H
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVY----L 149 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~----~ 149 (821)
|..+.++++++++.++|+|+++++...+ ...++|+||+.|++..++.+++.+++.++|++++++++++++... +
T Consensus 82 S~~~~a~~~~~~~~~vp~i~~~a~~~~~--~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~~ 159 (371)
T 4f06_A 82 TPNAMAVAPLLQEAKVPMVVMNAATSSI--TEKSPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETAF 159 (371)
T ss_dssp HHHHHHHGGGHHHHTCCEEESSCCCGGG--GGGCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred ccchHHHHHHHHhhcCCccccccccchh--cccCCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHHH
Confidence 9999999999999999999997664432 345689999999999999999999999999999999999874333 3
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCC-hhHHHHHHHHHHHccccCcceEEEEe
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCS-MDKTVTILKQAKEVHLMGDYQNYILS 228 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~-~~~~~~~l~~a~~~g~~~~~~~~i~~ 228 (821)
++.+++.+ +..+....++.+.+||++++.+|+++++|+|++.+. +..+..+++++++.|+....+.++..
T Consensus 160 ~~~~~~~g---------~~vv~~~~~~~~~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 230 (371)
T 4f06_A 160 KKTFEAEG---------GKVVEAVRMPLSTTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMST 230 (371)
T ss_dssp HHHHHHTT---------CEEEEEEEECTTCCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEE
T ss_pred HHHHHhcC---------CceEEEEecCcccccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEe
Confidence 44444443 333445678888999999999999999999987665 57788899999999998776666655
Q ss_pred cccccccccccCcccccCCceeeEEEEee--cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHH
Q psy16206 229 LTSYWINAHTVDFQDFQPGYANITTVRMI--NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAA 306 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~A 306 (821)
+. ......+........|+.....+ ..+++..++|.++|+++++.. ..++.+++.+||+++++++|
T Consensus 231 ~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~--------~~~~~~a~~~Yda~~~l~~A 298 (371)
T 4f06_A 231 GD----VVTEPDLPNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKL--------DEVTMTSVAAYDGARLIYKM 298 (371)
T ss_dssp GG----GGCGGGHHHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCG--------GGCCHHHHHHHHHHHHHHHH
T ss_pred cc----cCCHHHHHhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCC--------CCccchHHHHHHHHHHHHHH
Confidence 52 11111122222334555555543 345788999999999887432 23677899999999999999
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEee
Q psy16206 307 LQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVS 371 (821)
Q Consensus 307 l~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~ 371 (821)
+++... ..++++++++|++++|+|++|+++||+ ++++....+.|.+++.
T Consensus 299 i~~~ag---------------~~d~~~v~~al~~~~~~~~~G~i~fd~-~~~~~~~~~~i~~v~~ 347 (371)
T 4f06_A 299 IEATSG---------------KSDPDKAIAAVKGMKWVSPRGEVSIDP-ETRHITQNVYLREVEK 347 (371)
T ss_dssp HHHTTT---------------SCCHHHHHHHHTTCEEEETTEEEEECT-TTCBEEEEEEEEEEEE
T ss_pred HHHhcC---------------CCCHHHHHHHHhCCCeeCCcEEEEEcC-CCCcccCCEEEEEEEe
Confidence 997542 568899999999999999999999999 8888778888888874
No 18
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=4.3e-35 Score=331.69 Aligned_cols=360 Identities=16% Similarity=0.185 Sum_probs=273.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHh----------------------------hc-
Q psy16206 13 EVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNAT----------------------------SE- 63 (821)
Q Consensus 13 ~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li----------------------------~~- 63 (821)
+...|+.+|||+||++++ ||+|++|+++++| +|+++..|++.+.+++ .+
T Consensus 50 ~~~~a~~~AieeIN~~~~-lLpn~tLg~~i~D-~~~~~~~a~~~a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~ 127 (496)
T 3ks9_A 50 QRVEAMFHTLDKINADPV-LLPNITLGSEIRD-SCWHSSVALEQSIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKK 127 (496)
T ss_dssp HHHHHHHHHHHHHHTCSS-SSTTCCEEEEEEE-CTTCHHHHHHHHHHHHSTTC--------------------------C
T ss_pred HHHHHHHHHHHHHhCCCC-CCCCceEeEEEEE-cCCCcHHHHHHHHHHHHhhhccccccCCCCccccCcccccccccCCC
Confidence 467899999999999999 9999999999999 8899999999999998 24
Q ss_pred CeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecC
Q psy16206 64 GIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETH 143 (821)
Q Consensus 64 ~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~ 143 (821)
+|.|||||.+|..+.+++++++.+++|+|+++++.+.++++..+||+||+.|++..++++++++++++||++|++|++|+
T Consensus 128 ~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd 207 (496)
T 3ks9_A 128 PIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEG 207 (496)
T ss_dssp CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred ceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecc
Confidence 89999999999999999999999999999998776666777789999999999999999999999999999999999988
Q ss_pred Cc-hhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcC--CCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHcc
Q psy16206 144 DN-LVYLQQVLENAHDDDKEIRPGRPSVTIR-QLP--PDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVH 217 (821)
Q Consensus 144 ~~-~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~--~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g 217 (821)
++ ...++.+.+++. ..|++|... .++ .+..|+...+++|+++ ++++|++.+...++..+++++.++|
T Consensus 208 ~~G~~~~~~~~~~~~-------~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g 280 (496)
T 3ks9_A 208 NYGESGMDAFKELAA-------QEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLG 280 (496)
T ss_dssp HHHHHHHHHHHHHHH-------HTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-------HcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHHHHhC
Confidence 84 444444444554 557888754 454 3466899999999985 8899999999999999999999999
Q ss_pred ccCcceEEEEecccccccccccCcccccCCceeeEEEEeecCCChhHHHhhhhhhh---------------hhhc-----
Q psy16206 218 LMGDYQNYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIY---------------EENE----- 277 (821)
Q Consensus 218 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~---------------~~~~----- 277 (821)
+.++ +.|+.+++ ++..............|.+++.....+.+.+++|++.+.- .+.=
T Consensus 281 ~~~k-~~~i~s~~---w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~ 356 (496)
T 3ks9_A 281 VVGE-FSLIGSDG---WADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGH 356 (496)
T ss_dssp CCSC-CEEEECTT---TTTCHHHHTTCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-
T ss_pred CCCc-EEEEEech---hccccccccccccccCceEEEeccCCcCcchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCC
Confidence 9754 56887774 3221111111222246888898888899999998876431 1110
Q ss_pred --------cccccccccc---ccchhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccc
Q psy16206 278 --------RGRSLNVRAE---TVKIEAALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGM 346 (821)
Q Consensus 278 --------~~~~~~~~~~---~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~ 346 (821)
..|....... .........|+||+++|+||+++..+........|.....+ .+.+|+.+|++++|.+.
T Consensus 357 ~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~~~~~c~~~~~~-~~~qL~~~Lk~v~f~~~ 435 (496)
T 3ks9_A 357 LLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPI-DGSKLLDFLIKSSFIGV 435 (496)
T ss_dssp ----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCGGGSSC-CHHHHHHHHHTCEEECT
T ss_pred ccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCCCC-CHHHHHHHHHhcCCcCC
Confidence 0011111000 00112246999999999999998642111223456543323 56789999999999999
Q ss_pred ee-eEEEeCCCCccceeEEEEEEEee--c---ceEEEEEEecCCCccee
Q psy16206 347 TG-RINLDSQTGRRNSFSLEFVEYVS--D---QWKVLGTWNTAFGLNHS 389 (821)
Q Consensus 347 tG-~i~fd~~~g~~~~~~~~i~~~~~--~---~~~~vG~w~~~~gl~~~ 389 (821)
+| .+.||+ +|+.. ..|+|+++.. + .+++||.|+. ..|.++
T Consensus 436 ~g~~v~fd~-~gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~~-~~l~i~ 481 (496)
T 3ks9_A 436 SGEEVWFDE-KGDAP-GRYDIMNLQYTEANRYDYVHVGTWHE-GVLNID 481 (496)
T ss_dssp TSCEEECCT-TSCCC-CEEEEEEEEECC--CEEEEEEEEEET-TEEEEC
T ss_pred CCCEEEECC-CCCcc-ceEEEEEEEECCCCCEEEEEEEEEeC-CeEEEe
Confidence 99 699999 99987 7899999874 2 2689999983 335544
No 19
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=1.4e-34 Score=314.73 Aligned_cols=332 Identities=14% Similarity=0.118 Sum_probs=262.5
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
||||+++|+|| ..+++|+++|+++||++|| +.|++|+++++| ++++|..+++++++|+.+ +|.+|+||.+
T Consensus 8 IkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GG--i~Gr~ielv~~D-~~~~p~~a~~~a~~li~~~~v~~i~g~~~ 84 (353)
T 4gnr_A 8 IKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGG--IDGKQIEVVDKD-NKSETAEAASVTTNLVTQSKVSAVVGPAT 84 (353)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTC--BTTBEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEECCCS
T ss_pred EEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCC--CCCeEEEEEEec-CCCCHHHHHHHHHHHHhhCCceEEecccc
Confidence 79999999999 6688999999999999999 558899999999 669999999999999998 8999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC-CCCEEEEEEecCC-chhHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM-DWDTFTIIYETHD-NLVYLQQ 151 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~-~w~~v~ii~~~~~-~~~~~~~ 151 (821)
|..+.++.++++.+++|+|+++++...+ ...++|+||+.|++..++++++.++... ++++++++++++. +...+.+
T Consensus 85 s~~~~a~~~~~~~~~vp~i~~~~~~~~l--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~ 162 (353)
T 4gnr_A 85 SGATAAAVANATKAGVPLISPSATQDGL--TKGQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIAK 162 (353)
T ss_dssp HHHHHHHHHHHHHTTCCEEESSCCCTTT--TTTCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHHH
T ss_pred CcccceehhhhhccCcceEeeccccccc--ccCCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHHHH
Confidence 9999999999999999999997664432 3457899999999999999999998765 4556666666543 5555555
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
.+.+.. .+..+....++++..||++++.+|++.++|+|++.+...++..+++|++++|+..+ ++..++
T Consensus 163 ~~~~~~--------g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~- 230 (353)
T 4gnr_A 163 SFRESY--------KGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDG- 230 (353)
T ss_dssp HHHHHC--------CSEEEEEEEECTTCCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGG-
T ss_pred HHHHHc--------CCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecc-
Confidence 444432 13344556788889999999999999999999999999999999999999998654 444332
Q ss_pred ccccccccCcccccCCceeeEEEEee---cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRMI---NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQ 308 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~ 308 (821)
................+......+ ...++..++|.++|+++++.. |+.+++++|||++++++|++
T Consensus 231 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~----------p~~~a~~~Yda~~~la~Ai~ 298 (353)
T 4gnr_A 231 --FNGEEFVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNEE----------PSTFAALAYDSVHLVANAAK 298 (353)
T ss_dssp --GCSHHHHHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHSSC----------CCHHHHHHHHHHHHHHHHHT
T ss_pred --cccchhhhhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhCCC----------CChhHHHHHHHHHHHHHHHh
Confidence 111111011112223444444332 234678899999999998543 67899999999999999998
Q ss_pred HhhccCCCCCCCCCCCCCCCCCchhHHHhhhhc-eeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEe
Q psy16206 309 SLGERKPLPTPLSCENPSSWQHGLGIGNLMKSI-TIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWN 381 (821)
Q Consensus 309 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~ 381 (821)
++. ++..++++|+.+ +|+|++|+++||+ +|++. ..+.++++++|+++.+..-.
T Consensus 299 ~a~------------------~~~~v~~aL~~~~~~~g~~G~i~f~~-~g~~~-~~~~i~~v~~Gk~~~~~~v~ 352 (353)
T 4gnr_A 299 GAK------------------NSGEIKDNLAXTKDFEGVTGQTSFDA-DHNTV-KTAYMMTMNNGKVEAAEVVK 352 (353)
T ss_dssp TCS------------------SHHHHHHHHHTCCCEEETTEEECCCT-TSCCC-CCEEEEEEETTEEEEEEEEC
T ss_pred cCC------------------CHHHHHHHHHhcCCCccCceeEEECC-CcCCc-CCeEEEEEECCEEEEEEEeC
Confidence 653 467899999987 5999999999999 99886 45668999999888776544
No 20
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=4.8e-35 Score=326.06 Aligned_cols=347 Identities=11% Similarity=0.050 Sum_probs=269.4
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
||||+++|++| ...++|+++|+++||++|+ +.|++|+++++|++.+++..+++.+++|+.+ +|.+||||.+
T Consensus 15 i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~gg--i~G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~~~ 92 (419)
T 3h5l_A 15 VVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGG--ILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAGYN 92 (419)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTS--BTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECSCC
T ss_pred EEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCC--cCceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEcccc
Confidence 68999999998 6688999999999999999 4488999999995546999999999999995 9999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCC----CCCCCCccEEEEecChhhHHHHHHHHHHhC--------CCCEEEEEEe
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKY----FIPTNGVHGVNVYPESHLISKGISVIINDM--------DWDTFTIIYE 141 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~----~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--------~w~~v~ii~~ 141 (821)
|..+.+++++++.++||+|++++.+... .++..++|+||+.|++..++.++++++.++ +|++|++|++
T Consensus 93 s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~ 172 (419)
T 3h5l_A 93 LENGTALHDVAADAGVIAMHANTVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITG 172 (419)
T ss_dssp SSCSCHHHHHHHHHTCEEEECCCCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEEC
T ss_pred chhHHHhHHHHHHcCCeEEEcCcchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEc
Confidence 9999999999999999999975443211 134568999999999999999999999875 8999999999
Q ss_pred cCCchhHHHHHHHh-cCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCC-hhHHHHHHHHHHHccc
Q psy16206 142 THDNLVYLQQVLEN-AHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCS-MDKTVTILKQAKEVHL 218 (821)
Q Consensus 142 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~-~~~~~~~l~~a~~~g~ 218 (821)
++++.....+.+++ .. ..|.++.. ..++.+..|+.+++++|++.++|+|++.+. +.++..+++|++++|+
T Consensus 173 ~~~~g~~~~~~~~~~~~-------~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~ 245 (419)
T 3h5l_A 173 PGIYSVNIANAIRDGAG-------EYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTDPT 245 (419)
T ss_dssp SSHHHHHHHHHHHHHGG-------GGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTSCC
T ss_pred CcchhHHHHHHHHHHHH-------HcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHcCC
Confidence 88755444444433 33 44667654 468877899999999999999999999865 5789999999999998
Q ss_pred cCcceEEEEecccccccccccCcccccCCceeeEEEEe-ecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHH
Q psy16206 219 MGDYQNYILSLTSYWINAHTVDFQDFQPGYANITTVRM-INPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMY 297 (821)
Q Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Y 297 (821)
. ..|+.+++ |.+.... .......+|+..... ...+++..++|.++|+++++.. +.+.+++.+|
T Consensus 246 ~---~~~~~~~~--~~~~~~~--~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~~---------p~~~~a~~~Y 309 (419)
T 3h5l_A 246 N---SLVYLQYG--ASLAAFR--DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGDL---------SSTASGCQTY 309 (419)
T ss_dssp S---CEEEECSG--GGSHHHH--HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCTT---------SCHHHHHHHH
T ss_pred C---ceEEecCC--CCcHHHH--HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCCC---------CCcchhHHHH
Confidence 2 34555442 1111000 111122344443333 2456788999999999998543 2246899999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccc------------eeEEE
Q psy16206 298 DAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRN------------SFSLE 365 (821)
Q Consensus 298 DAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~------------~~~~~ 365 (821)
||+++++.|+++++. |...+.+.++..++++|++++|+|++|.++||+ +|++. ...+.
T Consensus 310 da~~~~~~a~~~a~~---------~~~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~-~g~~~~~~~~~~~~~~~~~~~~ 379 (419)
T 3h5l_A 310 SALYAYSIAAALAGG---------PGAPYDDVQNKAVADRLRSLIFRGPVGTMRFHA-DTQSAWSYPTETNDPSLGMPHI 379 (419)
T ss_dssp HHHHHHHHHHHHTTS---------CCCTTCHHHHHHHHHHHHHCEEEETTEEEEBCT-TTCBBCEETTTCSCTTSSEECE
T ss_pred HHHHHHHHHHHHhcC---------CccCCCccCHHHHHHHHHhCCcccCceEEEECC-CCCccccccCccCCccccCCce
Confidence 999999999999872 112233467889999999999999999999999 88843 34567
Q ss_pred EEEEeecceEEEEEEec
Q psy16206 366 FVEYVSDQWKVLGTWNT 382 (821)
Q Consensus 366 i~~~~~~~~~~vG~w~~ 382 (821)
|+++++++++.+-.|-.
T Consensus 380 i~q~q~g~~~~~~V~P~ 396 (419)
T 3h5l_A 380 FSQIFDKAEDGVLIAPA 396 (419)
T ss_dssp EEECCCTTSCCEEEEST
T ss_pred EEEeeCCceeeEEECCc
Confidence 88988888744446654
No 21
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=4e-34 Score=313.49 Aligned_cols=326 Identities=10% Similarity=0.016 Sum_probs=256.2
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhc-CCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINK-DFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQ 72 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~-~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~ 72 (821)
||||+++|++| ....+|+++|++++|+ .++ +.|++|+++++| ++++|..+++.+++|+.+ +|.+||||.
T Consensus 5 i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~gg--i~G~~i~l~~~D-~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 5 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMT--LDGRKIVVITKD-DQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCE--ETTEEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred EEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCC--cCCEEEEEEEec-CCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 68999999998 6788999999999998 566 568999999999 669999999999999986 999999999
Q ss_pred CcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHH-HH
Q psy16206 73 SIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYL-QQ 151 (821)
Q Consensus 73 ~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~-~~ 151 (821)
+|..+.+++++++.+++|+|++.++...+++...++|+||+.|++..++.+++.++++++| ++++|++++++.... +.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~ 160 (374)
T 3n0x_A 82 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAA 160 (374)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHH
Confidence 9999999999999999999987554433344556899999999999999999988888898 899999988754443 33
Q ss_pred HHHhcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCC-----CcEEEEeCChhHHHHHHHHHHHccccCcceEE
Q psy16206 152 VLENAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSS-----ESHILLDCSMDKTVTILKQAKEVHLMGDYQNY 225 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~-----~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~ 225 (821)
+.+... ..|.++.. ..++.+..||++++++|++.+ +++|++.+.+... .+.++.++++...++.+
T Consensus 161 ~~~~~~-------~~G~~vv~~~~~~~~~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~ 231 (374)
T 3n0x_A 161 FKEALA-------KTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIEL 231 (374)
T ss_dssp HHHHHT-------TTTCEEEEEEEECTTCCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEE
T ss_pred HHHHHH-------HcCCEEeeeecCCCCCccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCee
Confidence 444444 45677764 467877899999999999998 9999887544222 34566666776556666
Q ss_pred EEecccccccccccCcccccCCceeeEEEEe---ecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHH
Q psy16206 226 ILSLTSYWINAHTVDFQDFQPGYANITTVRM---INPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYL 302 (821)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~ 302 (821)
.+.++ +.... ..+ ....|+.+... ..++++..++|.++|+++++. .|+.+++.+|||+++
T Consensus 232 ~~~~~----~~~~~--~~~-~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g~----------~p~~~a~~~Yda~~~ 294 (374)
T 3n0x_A 232 STGGN----ILPAL--AAY-KRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNA----------PPDFFTAGGFSAAMA 294 (374)
T ss_dssp EECCC----CTTGG--GGG-GGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHSS----------CCCHHHHHHHHHHHH
T ss_pred eeccc----cchhh--hhh-hhhcCccccceeccCCCCCHHHHHHHHHHHHHHCC----------CCChhHHHHHHHHHH
Confidence 65442 11111 111 11223333332 234578899999999998843 368899999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecc
Q psy16206 303 FAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQ 373 (821)
Q Consensus 303 ~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~ 373 (821)
+++|+++++ ..++..++++|++++|+|++|+++|++ ++++....+.|++++.++
T Consensus 295 l~~Al~~ag----------------~~~~~~v~~aL~~~~~~g~~G~i~f~~-~~~~~~~~~~i~~~~~~~ 348 (374)
T 3n0x_A 295 VVTAVQKAK----------------STDTEKLIAAMEGMEFDTPKGKMVFRK-EDHQALQSMYHFKVKVDP 348 (374)
T ss_dssp HHHHHHHHT----------------SCCHHHHHHHHTTCEEEETTEEEEECT-TTCBEECCEEEEEEECCT
T ss_pred HHHHHHHhC----------------CCCHHHHHHHHhcCCccCCCCCEEECc-ccCccccceEEEEEEeCC
Confidence 999999998 478899999999999999999999997 666666788899988644
No 22
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=7.1e-34 Score=310.75 Aligned_cols=334 Identities=14% Similarity=0.113 Sum_probs=268.6
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
+|||+++|++| ..+.+|+++|++++|+ +.|+++++++.| +++++..+.+.+++|+.+ +|++||||.+
T Consensus 17 ~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~-----i~G~~i~l~~~D-~~~~~~~~~~~~~~l~~~~~v~~iiG~~~ 90 (366)
T 3td9_A 17 VKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT-----VLGEEVELVLLD-TRSEKTEAANAAARAIDKEKVLAIIGEVA 90 (366)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE-----ETTEEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEECSS
T ss_pred EEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh-----cCCeEEEEEEec-CCCCHHHHHHHHHHHhccCCeEEEEccCC
Confidence 48999999999 6688999999999998 247899999999 569999999999999998 6999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHH-HhCCCCEEEEEEe-cCCc-hhHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVII-NDMDWDTFTIIYE-THDN-LVYLQ 150 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~-~~~~w~~v~ii~~-~~~~-~~~~~ 150 (821)
+..+.+++++++.+++|+|++.++...+ ...++|+||+.|++..++.++++++ +++||+++++||. ++++ ....+
T Consensus 91 s~~~~~~~~~~~~~~iP~i~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~ 168 (366)
T 3td9_A 91 SAHSLAIAPIAEENKVPMVTPASTNPLV--TQGRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSN 168 (366)
T ss_dssp HHHHHHHHHHHHHTTCCEEESSCCCGGG--TTTCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHH
T ss_pred chhHHHHHHHHHhCCCeEEecCCCCccc--cCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHH
Confidence 9999999999999999999997654432 2357899999999999999999999 5579999999987 3443 22223
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLT 230 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 230 (821)
.+.+... ..|..+....++.+..|+...++++++.++++|++.+...++..++++++++|+.. .|+..++
T Consensus 169 ~~~~~~~-------~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~ 238 (366)
T 3td9_A 169 FFINKFT-------ELGGQVKRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---YILAGDG 238 (366)
T ss_dssp HHHHHHH-------HTTCEEEEEEECTTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---EEEECGG
T ss_pred HHHHHHH-------HCCCEEEEEEeCCCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---eEEeeCC
Confidence 3333332 33566653337777899999999999999999999999999999999999999863 3555442
Q ss_pred cccccccccCcccccCCceeeEEEEeecCC---ChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHH
Q psy16206 231 SYWINAHTVDFQDFQPGYANITTVRMINPT---NPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAAL 307 (821)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al 307 (821)
+..... .........|+.....+.+. .+..++|.++|+++++.. |+.+++.+|||++++++|+
T Consensus 239 ---~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~----------p~~~~~~~yda~~~~~~al 304 (366)
T 3td9_A 239 ---ADAPEL-IEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYGKE----------PAALNALGYDAYMVLLDAI 304 (366)
T ss_dssp ---GCSTHH-HHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHSSC----------CCHHHHHHHHHHHHHHHHH
T ss_pred ---cCCHHH-HHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHCCC----------CchhHHHHHHHHHHHHHHH
Confidence 211110 01111223455555443332 778999999999988533 6788999999999999999
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhce-eccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCC
Q psy16206 308 QSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSIT-IDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAF 384 (821)
Q Consensus 308 ~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~-~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~ 384 (821)
++++ ..+++.++++|++.+ |+|++|+++|++ +|++.. .+.++++++|+++.++.|++..
T Consensus 305 ~~ag----------------~~~~~~~~~~l~~~~~~~g~~G~i~f~~-~g~~~~-~~~i~~~~~g~~~~v~~~~~~~ 364 (366)
T 3td9_A 305 ERAG----------------SFDREKIAEEIRKTRNFNGASGIINIDE-NGDAIK-SVVVNIVKNGSVDFEAVINPDD 364 (366)
T ss_dssp HHHT----------------SCCHHHHHHHHTTCCSEEETTEEECBCT-TSCBCC-CEEEEEEETTEEEEEEEECGGG
T ss_pred HHhC----------------CCCHHHHHHHHHhCCCCcccceeeEECC-CCCccC-ceEEEEEECCEEEEEEecChhh
Confidence 9998 478899999999998 999999999999 999874 5899999999999999999853
No 23
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=5.6e-34 Score=310.30 Aligned_cols=335 Identities=10% Similarity=0.040 Sum_probs=268.6
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI 74 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s 74 (821)
|+||+++|++| ..+..|+++|++++|++++ +.|+++++++.| +++++..+.+.+++|+.++|++||||.++
T Consensus 3 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~gg--i~G~~~~l~~~d-~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 3 VVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGG--INGEQIKIVLGD-DVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTC--BTTBCEEEEEEE-CTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred EEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCC--CCCeEEEEEEec-CCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 68999999987 5688999999999999998 578999999999 66999999999999999999999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHH-hCCCCEEEEEEecCCch----hHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIN-DMDWDTFTIIYETHDNL----VYL 149 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~-~~~w~~v~ii~~~~~~~----~~~ 149 (821)
..+.++.++++..++|+|++.++...+++ ..++++||+.|++..++.++++++. ++||+++++|+.++++. ..+
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~ 158 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTE-RGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADET 158 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGS-SCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhc-CCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHH
Confidence 99999999999999999998665443233 4569999999999999999999664 57999999999977632 333
Q ss_pred HHHHHhcCCCCCcCCCCCCeE-EEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEe
Q psy16206 150 QQVLENAHDDDKEIRPGRPSV-TIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILS 228 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v-~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~ 228 (821)
++.+++. |..+ ....++.+..|+...++++++.++++|++.+...++..++++++++|+.. .|+.+
T Consensus 159 ~~~l~~~----------g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~ 225 (356)
T 3ipc_A 159 KKAANAA----------GVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKA---KLVSG 225 (356)
T ss_dssp HHHHHHT----------TCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCC---EEEEC
T ss_pred HHHHHHc----------CCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCC---cEEEe
Confidence 4444444 3444 34567777889999999999999999999999999999999999999864 35554
Q ss_pred cccccccccccCcccccCCceeeEEEEeec-CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHH
Q psy16206 229 LTSYWINAHTVDFQDFQPGYANITTVRMIN-PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAAL 307 (821)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al 307 (821)
++ +..... .........|+.....+. ...+..++|.++|+++ +.. |+.+++.+|||++++++|+
T Consensus 226 ~~---~~~~~~-~~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~~~----------p~~~~~~~yda~~~~~~al 290 (356)
T 3ipc_A 226 DG---IVSNEL-ASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-GFN----------PEAYTLYSYAAMQAIAGAA 290 (356)
T ss_dssp GG---GCSHHH-HHHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-TCC----------CCTTHHHHHHHHHHHHHHH
T ss_pred cc---ccCHHH-HHHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-CCC----------cchhHHHHHHHHHHHHHHH
Confidence 42 111110 011112234544444332 3578889999999887 332 5678999999999999999
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEee---cceEEEEEEecCC
Q psy16206 308 QSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVS---DQWKVLGTWNTAF 384 (821)
Q Consensus 308 ~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~---~~~~~vG~w~~~~ 384 (821)
++++ ..+++.+.++|++.+|+|++|+++||+ +|++....+.|+++++ |.|+.+..|.+..
T Consensus 291 ~~ag----------------~~~~~~~~~~l~~~~~~g~~G~~~f~~-~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~~ 353 (356)
T 3ipc_A 291 KAAG----------------SVEPEKVAEALKKGSFPTALGEISFDE-KGDPKLPGYVMYEWKKGPDGKFTYIQQGSHHH 353 (356)
T ss_dssp HHHT----------------CCCHHHHHHHHTTCCBCCTTSSBCBCT-TSCBCCCCCEEEEEEECTTSSEEEEEC-----
T ss_pred HHhC----------------CCCHHHHHHHHHhCCCCCcceeeEECC-CCCccCCCeEEEEEEECCCCcEEEEecccccc
Confidence 9998 468899999999999999999999999 9999888999999996 8899999998753
No 24
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=5.6e-33 Score=302.65 Aligned_cols=338 Identities=12% Similarity=0.105 Sum_probs=267.4
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHh-hcCeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNAT-SEGIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li-~~~V~aiiGp~~ 73 (821)
|+||+++|++| ..+..|+++|++++|++++ +.|+++++++.| +++++..+.+.+++|+ .++|++||||.+
T Consensus 5 i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~gg--i~G~~~~l~~~d-~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 81 (358)
T 3hut_A 5 LLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGG--VGGRPVDILYAD-SRDDADQARTIARAFVDDPRVVGVLGDFS 81 (358)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTT--BTTBCEEEEEEE-CTTCHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred EEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCC--CCCeEEEEEEec-CCCCHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 68999999987 5688999999999999999 448899999999 5589999999999999 559999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc-hhHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN-LVYLQQV 152 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~-~~~~~~~ 152 (821)
+..+.++.+++...++|+|++.++...++. ..+++||+.|++..++.++++++...||+++++|+.++.+ ....+.+
T Consensus 82 s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 159 (358)
T 3hut_A 82 STVSMAAGSIYGKEGMPQLSPTAAHPDYIK--ISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAF 159 (358)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSCCCGGGTT--SCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCcEEecCCCCccccc--CCCeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999998655432222 2389999999999999999999988899999999987763 3333333
Q ss_pred HHhcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 153 LENAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
.+.+. ..|+.+.. ..++.+..++...++++++.++++|++.+....+..++++++++|+..+ |+..++
T Consensus 160 ~~~l~-------~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~- 228 (358)
T 3hut_A 160 RKAFE-------LRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSA- 228 (358)
T ss_dssp HHHHH-------HTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGG-
T ss_pred HHHHH-------HcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCc-
Confidence 33333 33566654 3577778899999999999999999999999899999999999999533 555542
Q ss_pred ccccccccCcccccCCceeeEEEEeec--CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRMIN--PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQS 309 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~ 309 (821)
+..... .........|+.....+. .+++..++|.++|+++++. .|+.+++.+|||+++++.|+++
T Consensus 229 --~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----------~p~~~~~~~yda~~~~~~al~~ 295 (358)
T 3hut_A 229 --LYSPKF-IDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGA----------IPTLFAAHGYDAVGIMLAAVGR 295 (358)
T ss_dssp --GCSHHH-HHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS----------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCHHH-HHHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHCC----------CCCHHHHHHHHHHHHHHHHHHH
Confidence 211110 111112234555555433 3578899999999998843 3678999999999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCCchh-HHHhhhhc-eeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecCC
Q psy16206 310 LGERKPLPTPLSCENPSSWQHGLG-IGNLMKSI-TIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTAF 384 (821)
Q Consensus 310 ~~~~~~~~~~~~c~~~~~~~~g~~-l~~~l~~~-~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~ 384 (821)
++ ..++.. ++++|++. +|+|++|+++|++ +|++....+.|+++++|+++.+...+++.
T Consensus 296 ag----------------~~~~~~~~~~~l~~~~~~~g~~G~~~f~~-~g~~~~~~~~i~~~~~G~~~~~~~~~~~~ 355 (358)
T 3hut_A 296 AG----------------PEVTRESLRDALAATDRYAGVTGITRFDP-ETRETTKILTRLVVREGDFRVIDREGHHH 355 (358)
T ss_dssp HC----------------TTCCHHHHHHHHHTCCSEEETTEEEEECT-TTCCEEECCEEEEEETTEEEEC-------
T ss_pred hC----------------CCChHHHHHHHHHhcCCCcCCceeeEECC-CCCcCCCceEEEEEECCEEEEeccccccc
Confidence 98 456788 99999999 8999999999999 99987788999999999898888777653
No 25
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=8.4e-34 Score=313.19 Aligned_cols=350 Identities=10% Similarity=0.023 Sum_probs=277.9
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
||||+++|++| ....+|+++|++++|++++ +.|++|++++.| +++++..+.+.+++|+.+ +|++||| .+
T Consensus 8 i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~gg--i~G~~i~l~~~D-~~~~~~~~~~~~~~li~~~~V~~iig-~~ 83 (392)
T 3lkb_A 8 VTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKL--VPGVVFNCVVRD-DQYNNANTQRFFEEAVDRFKIPVFLS-YA 83 (392)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTS--STTEEEEEEEEE-CTTCHHHHHHHHHHHHHTTCCSCEEE-CC
T ss_pred eEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCC--cCCeEeEEEEec-CCCCHHHHHHHHHHHHhhcCcEEEEe-CC
Confidence 68999999998 5688999999999999999 458999999999 669999999999999998 9999999 68
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-CCCCEEEEEEecCCc----hhH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-MDWDTFTIIYETHDN----LVY 148 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~~w~~v~ii~~~~~~----~~~ 148 (821)
+..+.++.++++..++|+|++++++.. .+...++|+||+.|++..++.++++++.. +||+++++|++++++ ...
T Consensus 84 s~~~~~~~~~~~~~~iP~i~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~ 162 (392)
T 3lkb_A 84 TGANLQLKPLIQELRIPTIPASMHIEL-IDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVED 162 (392)
T ss_dssp HHHHHHHHHHHHHHTCCEEESCCCGGG-GSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHH
T ss_pred cHHHHHHHHHHHhCCceEEecccChhh-ccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHHHH
Confidence 888899999999999999998665443 33456889999999999999999999877 699999999987763 334
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEE
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
+++.+++.+ ..+. ...++.+..|+.+.++++++.++++|++.+....+..++++++++|+.. .|+.
T Consensus 163 ~~~~l~~~G----------~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~ 229 (392)
T 3lkb_A 163 ARKAARELG----------LQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---RHLG 229 (392)
T ss_dssp HHHHHHHHT----------CEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEE
T ss_pred HHHHHHHcC----------CeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEE
Confidence 555555554 5554 4467777889999999999999999999999999999999999999854 3454
Q ss_pred ecccccccccccCcccccCCceeeEEEEeec--CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHH
Q psy16206 228 SLTSYWINAHTVDFQDFQPGYANITTVRMIN--PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAA 305 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~ 305 (821)
+++ +.... ..........|+.....+. .+++..++|.++|+++++... ....+.+++.+|||++++++
T Consensus 230 ~~~---~~~~~-~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p------~~~~~~~~~~~yda~~~~~~ 299 (392)
T 3lkb_A 230 AHY---TGGPD-LIALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGRPE------NFIESVNYTNGMLAAAIAVE 299 (392)
T ss_dssp CGG---GCSHH-HHHHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTCCH------HHHTCHHHHHHHHHHHHHHH
T ss_pred ecC---cccHH-HHHhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCCCc------ccccchhHHHHHHHHHHHHH
Confidence 441 21111 0111122245555555432 235667899999999885430 00012347899999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhce----ec-------cceeeEEEeCCCCccceeEEEEEEEeecce
Q psy16206 306 ALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSIT----ID-------GMTGRINLDSQTGRRNSFSLEFVEYVSDQW 374 (821)
Q Consensus 306 Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~----~~-------G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~ 374 (821)
|+++++.. ..+.+++.++++|++++ |+ |++|+++|++ +|++....+.++++++|++
T Consensus 300 al~~ag~~------------~~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~-~~~~~~~~~~i~~~~~g~~ 366 (392)
T 3lkb_A 300 AIRRAQER------------FKRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTK-SEHTGAEGLRILEAKGGRF 366 (392)
T ss_dssp HHHHHHHH------------HSSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCS-SCCEEECCBEEEEEETTEE
T ss_pred HHHHhhcc------------CCCCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCC-CCcCCcccEEEEEEeCCEE
Confidence 99999820 11378899999999987 88 9999999999 8888778899999999999
Q ss_pred EEEEEEecCCCcceecc
Q psy16206 375 KVLGTWNTAFGLNHSRT 391 (821)
Q Consensus 375 ~~vG~w~~~~gl~~~~~ 391 (821)
+.|+.|....++.....
T Consensus 367 ~~v~~w~~~~~~~~~~~ 383 (392)
T 3lkb_A 367 VPVTEPFTSALFRKVHY 383 (392)
T ss_dssp EECSCCBCCHHHHHHHH
T ss_pred EEeccccchhHHHhhhc
Confidence 99999999888765543
No 26
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=9.4e-33 Score=302.85 Aligned_cols=326 Identities=13% Similarity=0.068 Sum_probs=262.0
Q ss_pred CcEEEEeCCCc-------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh-cCeEEEEcCC
Q psy16206 1 MKIVGIFGPNE-------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-EGIAAIFGPQ 72 (821)
Q Consensus 1 i~IG~i~~~~~-------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-~~V~aiiGp~ 72 (821)
||||+++|++| ....+|+++|++++ +++ +.|+++++++.| +++|+..+.+.+++|+. ++|.+||||.
T Consensus 5 i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~gg--i~G~~i~l~~~D-~~~~~~~a~~~~~~li~~~~v~~iiG~~ 79 (375)
T 3i09_A 5 VKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGK--VNGKPIEVVYAD-HQNKADIAASKAREWMDRGGLDLLVGGT 79 (375)
T ss_dssp EEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSE--ETTEEEEEEEEE-CTTCHHHHHHHHHHHHHHSCEEEEEECS
T ss_pred eEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCC--CCCeEEEEEEec-CCCCHHHHHHHHHHHHhhCCCEEEECCC
Confidence 68999999976 34789999999999 355 468899999999 66999999999999999 5999999999
Q ss_pred CcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchh-HHHH
Q psy16206 73 SIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLV-YLQQ 151 (821)
Q Consensus 73 ~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~-~~~~ 151 (821)
+|..+.+++++++.+++|+|+++++...+++...++|+||+.|++..+++++++++.++||++|++|++++++.. ..+.
T Consensus 80 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~ 159 (375)
T 3i09_A 80 NSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEKN 159 (375)
T ss_dssp CHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHHH
Confidence 999999999999999999999966544435455689999999999999999999999999999999998887332 2333
Q ss_pred HHHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecc
Q psy16206 152 VLENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLT 230 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 230 (821)
+.+... ..|..+. ...++.+..|+.+.++++++.++++|++.+...++..++++++++|+..+. ++++.+
T Consensus 160 ~~~~~~-------~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~--~i~g~~ 230 (375)
T 3i09_A 160 TADVVK-------ANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM--KLAALL 230 (375)
T ss_dssp HHHHHH-------HTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC--EEEESS
T ss_pred HHHHHH-------HcCCEEeeeeeCCCCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc--eEEecc
Confidence 333332 3346664 446777788999999999999999999999999999999999999998765 343331
Q ss_pred cccccccccCccccc-CCceeeEEEEeec-CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHH
Q psy16206 231 SYWINAHTVDFQDFQ-PGYANITTVRMIN-PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQ 308 (821)
Q Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~ 308 (821)
. ....+..+. ....|+.....+. ..++..++|.++|+++++.. |+.+++.+|||++++++|++
T Consensus 231 ---~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~~----------p~~~a~~~Yda~~~~~~Al~ 295 (375)
T 3i09_A 231 ---M--FINDVHALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMKKM----------PSSLQAADYSSVTTYLKAVQ 295 (375)
T ss_dssp ---C--CHHHHHHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSSC----------CCHHHHHHHHHHHHHHHHHH
T ss_pred ---c--chhhHhhhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHCCC----------CcHHHHHHHHHHHHHHHHHH
Confidence 1 111111221 1134555444333 23688999999999988433 67889999999999999999
Q ss_pred HhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecc
Q psy16206 309 SLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQ 373 (821)
Q Consensus 309 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~ 373 (821)
+++ ..+++.++++|++++|+|++|.++|++ +|++. ..+.++++++++
T Consensus 296 ~ag----------------~~~~~~l~~aL~~~~~~~~~G~~~f~~-~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 296 AAG----------------STDSDKVMAQLKKMKIDDFYAKGYIRT-DGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp HHT----------------SCCHHHHHHHHTTSCEESSSCEEEECT-TSBEE-CCEEEEEECCGG
T ss_pred HhC----------------CCCHHHHHHHHhCCCccCCCCceEECC-CCCee-eeeEEEEEeccc
Confidence 998 578899999999999999999999999 99887 567788988654
No 27
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=1.7e-32 Score=299.97 Aligned_cols=334 Identities=13% Similarity=0.086 Sum_probs=263.4
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh-cCeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-EGIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-~~V~aiiGp~~ 73 (821)
|+||+++|++| ..+.+|+++|++++|. + +.|++|++++.| +++++..+.+.+++|+. ++|.+||||.+
T Consensus 7 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~--i~G~~i~l~~~D-~~~~~~~~~~~~~~li~~~~v~~iiG~~~ 81 (368)
T 4eyg_A 7 FKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--T--VAGKKIEVILKD-DAAIPDNTKRLAQELIVNDKVNVIAGFGI 81 (368)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--E--ETTEEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEECSS
T ss_pred EEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--C--CCCeEEEEEEeC-CCCCHHHHHHHHHHHHhcCCcEEEECCCc
Confidence 68999999987 5688999999999984 2 468899999999 66899999999999998 59999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc-hhHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN-LVYLQQV 152 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~-~~~~~~~ 152 (821)
+..+.++.++++..++|+|+++++...+++ .++|+||+.|++..++.++++++.++||+++++|++++.. ....+.+
T Consensus 82 s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~ 159 (368)
T 4eyg_A 82 TPAALAAAPLATQAKVPEIVMAAGTSIITE--RSPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFF 159 (368)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSCCCGGGGG--GCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCceEEeccCCChhhcc--CCCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHHH
Confidence 999999999999999999998765433222 2899999999999999999999999999999999987763 2223333
Q ss_pred HHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 153 LENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
.+... ..|..+. ...++.+..|+...+++|++.++++|++.+....+..++++++++|+..+++.|+.+++
T Consensus 160 ~~~l~-------~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~- 231 (368)
T 4eyg_A 160 KERFT-------AGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGD- 231 (368)
T ss_dssp HHHHH-------HTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETT-
T ss_pred HHHHH-------HcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCc-
Confidence 33333 3345654 44577778899999999999999999998888899999999999999876567777662
Q ss_pred ccccccccCcccccCCceeeEEEEeec--CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRMIN--PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQS 309 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~ 309 (821)
|.+... .........|+.....+. .+++..++|.++| ++++.. .++.+++.+|||++++++|+++
T Consensus 232 -~~~~~~--~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~---------~p~~~~~~~yda~~~~~~al~~ 298 (368)
T 4eyg_A 232 -VMDDDL--LNSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFGQ---------RPGFMAVGGYDGIHLVFEALKK 298 (368)
T ss_dssp -TTCHHH--HTTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHSS---------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCHHH--HHhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCCC---------CCChHHHHHHHHHHHHHHHHHH
Confidence 111111 111222335555554443 3578899999999 877321 3678999999999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe--ecceEEEE
Q psy16206 310 LGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV--SDQWKVLG 378 (821)
Q Consensus 310 ~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~--~~~~~~vG 378 (821)
++. ..+++.++++|++++|+|++|+++||+.+|++ ...+.|.+++ +|.++.+.
T Consensus 299 ~g~---------------~~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~ 353 (368)
T 4eyg_A 299 TGG---------------KADGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIE 353 (368)
T ss_dssp TTT---------------CCSHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEE
T ss_pred hCC---------------CCCHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEE
Confidence 873 35789999999999999999999999515544 5778888888 66664443
No 28
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=1.1e-32 Score=298.65 Aligned_cols=332 Identities=13% Similarity=0.099 Sum_probs=262.5
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI 74 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s 74 (821)
|+||+++|++| .....|+++|+++||++|+ +.|++|++++.| +++++..+.+.+++|++++|++||||.++
T Consensus 3 i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~gg--i~G~~l~l~~~d-~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 3 IKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGG--IKGDKLVGVEYD-DACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTT--BTTBCEEEEEEE-CTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred EEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEeC-CCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 68999999987 4678999999999999998 478999999999 56899999999999999999999999999
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHH-hCCCCEEEEEEecCCchh-HHHHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIN-DMDWDTFTIIYETHDNLV-YLQQV 152 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~-~~~w~~v~ii~~~~~~~~-~~~~~ 152 (821)
..+.++.+++...++|+|++.++...+++. .++++||+.|++..++.++++++. ++||+++++|+.++.+.. ..+.+
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~ 158 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQR-GYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSV 158 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSS-CCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcC-CCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHH
Confidence 888899999999999999986553322322 368999999999999999999985 579999999998765322 22333
Q ss_pred HHhcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 153 LENAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
.+... ..|..+.. ..++.+..|+.+.+++|++.++++|++.+....+..++++++++|+..+ |+.+++
T Consensus 159 ~~~l~-------~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~- 227 (346)
T 1usg_A 159 QDGLK-------AANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEG- 227 (346)
T ss_dssp HHHHH-------HTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGG-
T ss_pred HHHHH-------HcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCC-
Confidence 33332 33456654 4566667899999999999999999999988889999999999998653 666552
Q ss_pred ccccccccCcccccCCceeeEEEEee-cCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHh
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRMI-NPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSL 310 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~ 310 (821)
|.+.... ........|+.....+ ..+++..++|.++|+++++. .++.+++.+|||++++++|++++
T Consensus 228 -~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~----------~~~~~~~~~yda~~~~~~al~~~ 294 (346)
T 1usg_A 228 -VGNASLS--NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKD----------PSGPYVWITYAAVQSLATALERT 294 (346)
T ss_dssp -GCCTTHH--HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHH--HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhCC----------CCchhHHHHHHHHHHHHHHHHHh
Confidence 2211110 1111223455554433 33567889999999887632 35678999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEe-ecceEEE
Q psy16206 311 GERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYV-SDQWKVL 377 (821)
Q Consensus 311 ~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~-~~~~~~v 377 (821)
+ ..+++.++++|++.+|+|++|+++|++ +|++....|.+++++ +|.++.+
T Consensus 295 g----------------~~~~~~l~~~l~~~~~~g~~G~i~f~~-~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 295 G----------------SDEPLALVKDLKANGANTVIGPLNWDE-KGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp C----------------CCCHHHHHHHHHHHCEEETTEEECBCT-TSSBSSCCCEEEEECTTSCEEEC
T ss_pred C----------------CCCHHHHHHHHHhCCCccceeeeEECC-CCCccCCceEEEEEecCCEEEec
Confidence 7 457889999999999999999999999 999887889999998 7777654
No 29
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=6e-33 Score=306.16 Aligned_cols=343 Identities=10% Similarity=0.096 Sum_probs=272.0
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCC-Cce--EEEEEEEEecCCChhHHHHHHHHHhh-cCeEEEEc
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALP-PDI--ILEPIVQHVENYDSLHTAKLMCNATS-EGIAAIFG 70 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll-~~~--~l~~~~~D~~~~~~~~a~~~a~~li~-~~V~aiiG 70 (821)
||||+++|++| ....+|+++|+++||++|| ++ .|+ +|++++.| +++++..+.+.+++|+. ++|.+|||
T Consensus 5 i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~gg-i~~~G~~~~l~l~~~D-~~~~~~~a~~~~~~li~~~~V~~iiG 82 (391)
T 3eaf_A 5 INVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGI-YTKDGVRVNINYIKRD-YAYNPTTAEEYYREFRDRYGVIAIIG 82 (391)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCE-ECTTCCEEEEEEEEEE-CTTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCC-CccCCeEEEEEEEEeC-CCCCHHHHHHHHHHHHhhcCcEEEEE
Confidence 68999999998 5678999999999999999 43 788 99999999 66999999999999994 59999999
Q ss_pred CCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-CCCCEEEEEEe-cCCc-hh
Q psy16206 71 PQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-MDWDTFTIIYE-THDN-LV 147 (821)
Q Consensus 71 p~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~~w~~v~ii~~-~~~~-~~ 147 (821)
.+|..+.++.++++..++|+|++++++.. . .++|+||+.|++..++.++++++.. +||++|++|++ ++++ ..
T Consensus 83 -~~s~~~~a~~~~~~~~~iP~i~~~~~~~~---~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 83 -WGTADTEKLSDQVDTDKITYISASYSAKL---L-VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp -CCHHHHHHHHHHHHHHTCEEEESCCCGGG---T-TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred -cCcHHHHHHHHHHhhcCCeEEecccchhh---c-CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 68888999999999999999998665443 2 6789999999999999999999977 69999999999 6653 33
Q ss_pred HHHHHHHhcCCCCCcCCCCCCeEEE-EEcCCCCCChHHHHHH--hhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceE
Q psy16206 148 YLQQVLENAHDDDKEIRPGRPSVTI-RQLPPDTDDYRPLLKE--IKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQN 224 (821)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~g~~v~~-~~~~~~~~d~~~~l~~--lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~ 224 (821)
..+.+.+... ..|..+.. ..++.+..|+.+.+++ |++.++++|++.+...++..++++++++|+..+
T Consensus 158 ~~~~~~~~l~-------~~G~~v~~~~~~~~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~--- 227 (391)
T 3eaf_A 158 PIGAIKKAAP-------SLGLQVVGDYDLPLRATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF--- 227 (391)
T ss_dssp THHHHHHHTG-------GGTEEEEEEEECCTTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---
T ss_pred HHHHHHHHHH-------HcCCceeeeeccCCCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---
Confidence 3333333333 34566654 4677778899999999 999999999999999999999999999999643
Q ss_pred EEEecccccccccccCcccccCCcee-eEEEEeec-----CCChhHHHhhhhhhhhhh-cccccccccccccchhHHHHH
Q psy16206 225 YILSLTSYWINAHTVDFQDFQPGYAN-ITTVRMIN-----PTNPHIRSIMNGWIYEEN-ERGRSLNVRAETVKIEAALMY 297 (821)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~Y 297 (821)
++..+ |..... ..........| +.....+. .+.+. .+|.++|+++++ .. ...+.+++.+|
T Consensus 228 ~~~~~---~~~~~~-~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~--------p~~~~~~~~~y 294 (391)
T 3eaf_A 228 LLTNV---WGFDER-SPQLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVSE--------DQINLRVVQGF 294 (391)
T ss_dssp EEECG---GGCSTT-HHHHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCCG--------GGCCHHHHHHH
T ss_pred EEEec---cCCCHH-HHHhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCCC--------cccccHHHHHH
Confidence 34333 121111 11112223456 55555443 34454 679999999885 22 01247899999
Q ss_pred HHHHHHHHHHHHh---h-ccCCCCCCCCCCCCCCCCCchhHHHhhhhceec--ccee-eEEEeCCCCccceeEEEEEEE-
Q psy16206 298 DAVYLFAAALQSL---G-ERKPLPTPLSCENPSSWQHGLGIGNLMKSITID--GMTG-RINLDSQTGRRNSFSLEFVEY- 369 (821)
Q Consensus 298 DAv~~~a~Al~~~---~-~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~--G~tG-~i~fd~~~g~~~~~~~~i~~~- 369 (821)
||++++++|++++ + . ..+++.+.++|++.+|+ |++| +++|++ +|++....+.++++
T Consensus 295 da~~~l~~Al~~a~~~g~~---------------~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~-~~~~~~~~~~i~~~~ 358 (391)
T 3eaf_A 295 VNVWLLIKAIESVTSQDLQ---------------ERGGEALKEALEANTFDLGGITADTIDYEP-GFHLAYRKVFIIKLG 358 (391)
T ss_dssp HHHHHHHHHHTTSCHHHHH---------------HHTHHHHHHHHHHCCBCSTTCBSSCBCCBT-TBCCCCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCC---------------CCCHHHHHHHHHhCCCCCCCccccceeeCC-CCCCcceEEEEEEEe
Confidence 9999999999998 4 1 35788999999998898 9999 999998 88777788999999
Q ss_pred eecceEEEEEEecCCCccee
Q psy16206 370 VSDQWKVLGTWNTAFGLNHS 389 (821)
Q Consensus 370 ~~~~~~~vG~w~~~~gl~~~ 389 (821)
++|+++.++.|.....+.+.
T Consensus 359 ~~G~~~~v~~~~~~~~~~~~ 378 (391)
T 3eaf_A 359 ENGELQLMGKFEAPSQVDCA 378 (391)
T ss_dssp TTSSEEEEEEECCCTTCCHH
T ss_pred cCCEEEEeeeecCccccchh
Confidence 88999999999987766543
No 30
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=2.8e-32 Score=299.12 Aligned_cols=337 Identities=11% Similarity=0.033 Sum_probs=273.4
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
|+||+++|++| ..+.+|+++|++++| ++ ++|+++++++.| +++++..+.+.+++|+.+ +|++||||.+
T Consensus 17 i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~--~~g~~~~l~~~d-~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 91 (375)
T 4evq_A 17 LKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GK--LGGRSISFVKVD-DESAPPKATELTTKLIQSEKADVLIGTVH 91 (375)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TE--ETTEEEEEEEEE-CTTCHHHHHHHHHCCCCCSCCSEEEECSS
T ss_pred eEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CC--cCCEEEEEEEec-CCCCHHHHHHHHHHHHhcCCceEEEcCCc
Confidence 58999999987 568899999999998 44 778999999999 559999999999999997 9999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc-hhHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN-LVYLQQV 152 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~-~~~~~~~ 152 (821)
+..+.++.++++..++|+|++.++...+.+...++++||+.|++..++.++++++.++||+++++|+.++.+ ....+.+
T Consensus 92 s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 171 (375)
T 4evq_A 92 SGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGF 171 (375)
T ss_dssp HHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHH
Confidence 999999999999999999999766544344555899999999999999999999999999999999987763 3333333
Q ss_pred HHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 153 LENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
.+... ..|..+. ...++.+..|+...++++++.++++|++.+....+..++++++++|+..+ ++.++
T Consensus 172 ~~~l~-------~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~-- 239 (375)
T 4evq_A 172 KKSFT-------AGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPG-- 239 (375)
T ss_dssp HHHHH-------HTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEG--
T ss_pred HHHHH-------HcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecC--
Confidence 33333 3356664 44567678899999999999999999998999999999999999998632 33333
Q ss_pred ccccccccCcccccCCceeeEEEEeec--CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRMIN--PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQS 309 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~ 309 (821)
|.+... .........|+.....+. .+++..++|.++|+++++.. |+.+++.+|||++++++|+++
T Consensus 240 -~~~~~~--~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----------p~~~~~~~yda~~~~~~al~~ 306 (375)
T 4evq_A 240 -FLTDGV--EAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYKIP----------PDVFAVQGWDAGQLLDAGVKA 306 (375)
T ss_dssp -GGTTTT--HHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSSC----------CCHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCHHH--HHhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHCCC----------CcHHHHHHHHHHHHHHHHHHH
Confidence 222111 111222345666555443 35688999999999988433 678899999999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEecC
Q psy16206 310 LGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNTA 383 (821)
Q Consensus 310 ~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~ 383 (821)
++.. +.+++.++++|++++|+|++|+++|++ +|++. ..+.++++++++++.|+.+-+.
T Consensus 307 ~g~~--------------~~~~~~l~~~l~~~~~~g~~G~i~f~~-~g~~~-~~~~i~~~~~g~~~~v~~~~~~ 364 (375)
T 4evq_A 307 VGGD--------------VAKRKELNAAMAAASFASPRGPFKLSA-AHNPV-QNFYLRELKGGKSVNLGLAAPA 364 (375)
T ss_dssp TTTC--------------TTCHHHHHHHHHTCEEEETTEEEEBCT-TSCBC-CCEEEEEEETTEEEEEEEEECS
T ss_pred hCCC--------------CCCHHHHHHHHhcCCcccCCcceeECC-CCCcc-ccEEEEEEECCCcEEeeehhhc
Confidence 8721 368899999999999999999999999 99886 5799999999999999998664
No 31
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=1.8e-32 Score=300.93 Aligned_cols=324 Identities=13% Similarity=0.095 Sum_probs=261.1
Q ss_pred CcEEEEeCCCc-------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh-cCeEEEEcCC
Q psy16206 1 MKIVGIFGPNE-------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-EGIAAIFGPQ 72 (821)
Q Consensus 1 i~IG~i~~~~~-------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-~~V~aiiGp~ 72 (821)
||||+++|++| ....+|+++|++++| ++ +.|++|++++.| +++++..+.+.+++|+. ++|.+||||.
T Consensus 7 i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~--gg--i~G~~i~l~~~D-~~~~~~~a~~~~~~li~~~~v~~iiG~~ 81 (379)
T 3n0w_A 7 VTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVG--GK--ALGQPVKLVSAD-YQMKTDVALSIAREWFDRDGVDAIFDVV 81 (379)
T ss_dssp CEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTT--TE--ETTEECEEEEEE-CTTCHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred EEEEEEeCCccccccccCHHHHHHHHHHHHHhc--CC--CCCeEEEEEEeC-CCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 79999999977 347899999999993 45 468899999999 66999999999999999 5999999999
Q ss_pred CcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCch----hH
Q psy16206 73 SIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNL----VY 148 (821)
Q Consensus 73 ~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~----~~ 148 (821)
+|..+.+++++++.+++|+|++.++...+++...++|+||+.|++..+++++++++.++||+++++|++++++. ..
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~ 161 (379)
T 3n0w_A 82 NSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNAA 161 (379)
T ss_dssp CHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHHHH
Confidence 99999999999999999999986654443445568999999999999999999999999999999999888733 33
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEE
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
+++.+++. |..+. ...++.+..|+.+.+++|++.++++|++.+.+.++..+++|++++|+..+.+ ++.
T Consensus 162 ~~~~~~~~----------G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~ 230 (379)
T 3n0w_A 162 IRRELTAG----------GGQIVGSVRFPFETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVG 230 (379)
T ss_dssp HHHHHHHH----------TCEEEEEEEECTTCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEE
T ss_pred HHHHHHHc----------CCEEEEEEeCCCCCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEE
Confidence 34444444 45655 4467777889999999999999999999999999999999999999987642 333
Q ss_pred ecccccccccccCccccc-CCceeeEEEEeec-CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHH
Q psy16206 228 SLTSYWINAHTVDFQDFQ-PGYANITTVRMIN-PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAA 305 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~ 305 (821)
+.+ |.. ..+..+. ....|+.....+. ..++..++|.++|+++++.. |+.+++.+|||++++++
T Consensus 231 ~~~--~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~~----------p~~~~~~~Yda~~~~~~ 295 (379)
T 3n0w_A 231 GMI--DIL---TDVKSAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMGKM----------PTNNQAGGYSAALQYLK 295 (379)
T ss_dssp CCB--CCH---HHHHHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSSC----------CCHHHHHHHHHHHHHHH
T ss_pred ecc--cch---HHHHhhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHCCC----------CChHHHHHHHHHHHHHH
Confidence 331 111 1112221 1134554444333 23688999999999988433 67889999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceee-EEEeCCCCccceeEEEEEEEeecc
Q psy16206 306 ALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGR-INLDSQTGRRNSFSLEFVEYVSDQ 373 (821)
Q Consensus 306 Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~-i~fd~~~g~~~~~~~~i~~~~~~~ 373 (821)
|+++++ ..+++.++++|++++|+|+.|. +.|++ +|++. ..+.++++++++
T Consensus 296 Al~~ag----------------~~~~~~v~~aL~~~~~~~~~G~~~~f~~-~g~~~-~~~~i~~~~~~~ 346 (379)
T 3n0w_A 296 AVNAIG----------------SKDPQKVFAYLKTIKFDDAVTRHGTLRP-GGRLV-RDMYLVRAKKPE 346 (379)
T ss_dssp HHHHHT----------------CCCHHHHHHHHTTCCBCSSSCCSBEECT-TSBEE-CCEEEEEECCGG
T ss_pred HHHHhC----------------CCCHHHHHHHHhcCCccccCCCceeECC-CCCcc-cceEEEEEEchh
Confidence 999998 5788999999999999999885 99999 99876 678888988755
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=2.5e-32 Score=298.15 Aligned_cols=331 Identities=9% Similarity=0.057 Sum_probs=264.4
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
|+||+++|++| .....|+++|++++|++|+ +.|+++++++.| +++++..+.+.+++|+.+ +|.+||||.+
T Consensus 6 i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~gg--i~G~~i~l~~~D-~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 82 (364)
T 3lop_A 6 ISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGG--INGETIRLVARD-DEQKIEQTVRNVRDMARVDNPVALLTVVG 82 (364)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTT--BTTBCEEEEEEE-CTTCHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred EEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCC--cCCeEEEEEEeC-CCCCHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 68999999987 5678999999999999999 568899999999 669999999999999997 9999999999
Q ss_pred cchHHHHHH--HhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc-hhHHH
Q psy16206 74 IENRNIIES--MCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN-LVYLQ 150 (821)
Q Consensus 74 s~~~~~v~~--i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~-~~~~~ 150 (821)
+..+.++.+ +++..++|+|++.++...+++ ++++||+.|++..++.++++++.++||++|++|+.++++ ....+
T Consensus 83 s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~---~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 83 TANVEALMREGVLAEARLPLVGPATGASSMTT---DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp HHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS---CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CHHHHhhCchhhHHhcCCcEEEcccCcHhhcc---CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 999999999 999999999998665443222 899999999999999999999999999999999998763 33333
Q ss_pred HHHHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEec
Q psy16206 151 QVLENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
.+.+... ..|..+. ...++.+..|+...++++++.++++|++.+....+..++++++++|+..+ |+..+
T Consensus 160 ~~~~~~~-------~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~ 229 (364)
T 3lop_A 160 GVERTLK-------AHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLS 229 (364)
T ss_dssp HHHHHHH-------TTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECT
T ss_pred HHHHHHH-------HcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEec
Confidence 3333333 3344443 44677778899999999999999999999999999999999999999654 55444
Q ss_pred ccccccccccCccccc-CCceeeEEEEe----ecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHH
Q psy16206 230 TSYWINAHTVDFQDFQ-PGYANITTVRM----INPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFA 304 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a 304 (821)
+ +.... ...... ....|+..... ...+.+..++|.++|+++++.. ..|+.+++.+|||+++++
T Consensus 230 ~---~~~~~-~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--------~~p~~~a~~~yda~~~~~ 297 (364)
T 3lop_A 230 S---IDPGI-LQKVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKD--------VDLSFRAVEGFVAAKVLA 297 (364)
T ss_dssp T---SCHHH-HHHHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTT--------CCCCHHHHHHHHHHHHHH
T ss_pred c---CChHH-HHHHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCC--------CCCChHHHHHHHHHHHHH
Confidence 2 21111 011111 22345544432 2246788999999999987431 136789999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhc-eecc-ceeeEEEeCCCCccceeEEEEEEEeecceE
Q psy16206 305 AALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSI-TIDG-MTGRINLDSQTGRRNSFSLEFVEYVSDQWK 375 (821)
Q Consensus 305 ~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~~~G-~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~ 375 (821)
+|+++++. +.+++.++++|+++ +|+| .+|+++|++ ++++......+.+++++++.
T Consensus 298 ~al~~ag~---------------~~~~~~v~~aL~~~~~~~~~~~g~i~f~~-~~~~~~~~~~i~~~~~~~~~ 354 (364)
T 3lop_A 298 EAIRRAGP---------------KPTREQVRHALTELRDYDVGGGFTVDFTD-RSRPGSHYIELGVVGPNGLV 354 (364)
T ss_dssp HHHHHHCS---------------SCCHHHHHHHHHTCEEEESSTTCEEECSS-TTSCSCCCCEEEEECTTSCE
T ss_pred HHHHHhCC---------------CCCHHHHHHHHHhcCCccCCCCeeeecCC-CCcCCcceEEEEEEcCCCcc
Confidence 99999963 46889999999999 6999 999999999 88777677888888877643
No 33
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.97 E-value=2.2e-29 Score=276.99 Aligned_cols=335 Identities=13% Similarity=0.020 Sum_probs=260.0
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh-cCeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS-EGIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~-~~V~aiiGp~~ 73 (821)
++||+++|++| ..+..|+++|++++|++++ +.|++|++++.| +++++..+.+.+++|+. ++|++||||.+
T Consensus 8 ~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~gg--i~G~~l~l~~~d-~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 84 (385)
T 1pea_A 8 PLIGLLFSETGVTADIERSQRYGALLAVEQLNREGG--VGGRPIETLSQD-PGGDPDRYRLCAEDFIRNRGVRFLVGCYM 84 (385)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTT--BTTBCCEEEEEC-CTTCHHHHHHHHHHHHHTTCCCEEEECCS
T ss_pred eEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccC--CCCeEEEEEEeC-CCCCHHHHHHHHHHHHhhCCcEEEECCCc
Confidence 68999999986 5678999999999999998 458899999999 55899999999999997 69999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc-hhHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN-LVYLQQV 152 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~-~~~~~~~ 152 (821)
+..+.++.+++...++|+|++..... ...++++||+.|++..+++.+++++...+|+++++|+.++.+ ....+.+
T Consensus 85 s~~~~~~~~~~~~~~iP~v~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 160 (385)
T 1pea_A 85 SHTRKAVMPVVERADALLCYPTPYEG----FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVM 160 (385)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSCCCC----CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCceEEECCcccC----ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHHH
Confidence 88888899999999999999864321 224678999999999999999999999999999999987653 2233333
Q ss_pred HHhcCCCCCcCCCCCCeEEE-EEcCC--CCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEec
Q psy16206 153 LENAHDDDKEIRPGRPSVTI-RQLPP--DTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~~-~~~~~--~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
.+... ..|..+.. ..++. +..++...+++|++.++++|++.+....+..++++++++|+..+.+.++ +.
T Consensus 161 ~~~l~-------~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~-~~ 232 (385)
T 1pea_A 161 RHLYR-------QHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIA-SL 232 (385)
T ss_dssp HHHHH-------HTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEE-ES
T ss_pred HHHHH-------HcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEE-ec
Confidence 33332 33566653 33443 4668899999999889999999888888999999999999975544343 33
Q ss_pred ccccccccccCccccc-CCceeeEEEEeec--CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHH
Q psy16206 230 TSYWINAHTVDFQDFQ-PGYANITTVRMIN--PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAA 306 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~A 306 (821)
+ |.+ . .+..+. ....|+.....+. .+++..++|.++|+++++.. ..++.+++.+|||++++++|
T Consensus 233 ~--~~~-~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~--------~~~~~~~~~~yda~~~~~~A 299 (385)
T 1pea_A 233 T--TSE-A--EVAKMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPEN--------ATITAWAEAAYWQTLLLGRA 299 (385)
T ss_dssp S--CCH-H--HHTTSCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTT--------CCCCHHHHHHHHHHHHHHHH
T ss_pred c--cch-H--HHHhcCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCC--------CCCChHHHHHHHHHHHHHHH
Confidence 1 211 1 111111 1234555554332 45788899999999887421 13567899999999999999
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEE-eecceEEEEEE
Q psy16206 307 LQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEY-VSDQWKVLGTW 380 (821)
Q Consensus 307 l~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~-~~~~~~~vG~w 380 (821)
+++++ ..+++.++++|++++|+|++|.++|++ ++++....+.|.++ ++|.++.|...
T Consensus 300 l~~ag----------------~~~~~~l~~al~~~~~~g~~G~i~f~~-~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 300 AQAAG----------------NWRVEDVQRHLYDIDIDAPQGPVRVER-QNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp HHHHT----------------SCCHHHHHHHHTTCCEEETTEEEEECT-TTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred HHHhC----------------CCCHHHHHHHHhhCcccCCCCCeEEcC-CCCccccceEEEEEcCCCcEEEeecC
Confidence 99998 457899999999999999999999998 77766677889999 67778777654
No 34
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.97 E-value=5.1e-30 Score=282.24 Aligned_cols=332 Identities=9% Similarity=0.051 Sum_probs=255.6
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
|+||+++|++| .....|+++|++++| |+++++++.| +++++..+.+.+++|+.+ +|++||||.+
T Consensus 28 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~--------G~~i~l~~~d-~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 98 (386)
T 3sg0_A 28 IKIGITMSASGPGAALGQPQSKTVAALPKEIG--------GEKVTYFALD-DESDPTKAAQNARKLLSEEKVDVLIGSSL 98 (386)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHGGGSCSEET--------TEEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEECCSS
T ss_pred eEEEEEeccCCchhhhcHHHHHHHHHHHHHcC--------CEEEEEEEec-CCCCHHHHHHHHHHHHhhcCceEEECCCC
Confidence 68999999998 457788888888763 5789999999 559999999999999998 8999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCC-CCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc----hhH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFI-PTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN----LVY 148 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~-~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~----~~~ 148 (821)
+..+.++.++++..++|+|++.+++..++. ...++|+||+.|++..+++++++++.++||+++++|+.++++ ...
T Consensus 99 s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 178 (386)
T 3sg0_A 99 TPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKV 178 (386)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred chhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 999999999999999999999765443222 356899999999999999999999999999999999987763 334
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEE
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
+++.+++. |..+. ...++.+..|+...++++++.++++|++.+.+..+..++++++++|+..+ ++.
T Consensus 179 ~~~~l~~~----------g~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~ 245 (386)
T 3sg0_A 179 LAAAAPKL----------GFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQ 245 (386)
T ss_dssp HHHHHHHH----------TCEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EEC
T ss_pred HHHHHHHc----------CCEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEe
Confidence 44444444 45554 44567678899999999999999999999998899999999999999743 444
Q ss_pred ecccccccccccCcccccCCceeeEEEEe-------ecCCC---hhHHHhhhhhhhhhhcccccccccccccchhHHHHH
Q psy16206 228 SLTSYWINAHTVDFQDFQPGYANITTVRM-------INPTN---PHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMY 297 (821)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Y 297 (821)
.++ ++.... .........|+..... ....+ +..++|.++|+++++.. .++.+++.+|
T Consensus 246 ~~~---~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---------~p~~~~~~~y 312 (386)
T 3sg0_A 246 THG---VATEEF-IKLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGGA---------APTIFGVHLW 312 (386)
T ss_dssp CGG---GCSHHH-HHHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTTC---------CCCHHHHHHH
T ss_pred ccc---cCCHHH-HHhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCCC---------CCChhHHHHH
Confidence 332 211110 0111122345544432 11122 45789999999988542 3578899999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhc-eeccceeeEEEeCCCCcc--ceeEEEEEEEeecce
Q psy16206 298 DAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSI-TIDGMTGRINLDSQTGRR--NSFSLEFVEYVSDQW 374 (821)
Q Consensus 298 DAv~~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~~~G~tG~i~fd~~~g~~--~~~~~~i~~~~~~~~ 374 (821)
|+++++++|++++.+. ...+.+.+++.++++|++. +|+|++|+++|++ ++++ ....+.++++++|++
T Consensus 313 da~~~~~~al~~a~~~---------~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~-~~~~g~~~~~~~i~~~~~G~~ 382 (386)
T 3sg0_A 313 DSMTLVENAIPAALKA---------AKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTP-DNHNGYDERSAFLIEIRDGAF 382 (386)
T ss_dssp HHHHHHHHHHHHHHHH---------CCTTSHHHHHHHHHHHTTCCSEEETTEEECCCS-SCSSCCCGGGCEEEEEETTEE
T ss_pred HHHHHHHHHHHHhhhc---------cCCCCcchHHHHHHHHHhccCccccceeEEECC-CcCCCCCCCceEEEEEECCEE
Confidence 9999999999999531 0012234578999999998 7999999999998 6554 345688999998887
Q ss_pred EEE
Q psy16206 375 KVL 377 (821)
Q Consensus 375 ~~v 377 (821)
+.+
T Consensus 383 ~~~ 385 (386)
T 3sg0_A 383 RLK 385 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 754
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.97 E-value=2.1e-29 Score=274.76 Aligned_cols=332 Identities=11% Similarity=0.068 Sum_probs=255.2
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~ 73 (821)
|+||+++|++| .....|+++|++++| |+++++++.| +++++..+.+.+++|+.+ +|++||||.+
T Consensus 8 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~--------g~~i~l~~~d-~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 78 (362)
T 3snr_A 8 ITVGISVTTTGPAAALGIPERNALEFVVKEIS--------GHPIKIIVLD-DGGDPTAATTNARRFVTESKADVIMGSSV 78 (362)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHGGGGSCSEET--------TEEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEECSS
T ss_pred eEEEEEecccCchhhcCHHHHHHHHHHHHHhC--------CeEEEEEEec-CCCCHHHHHHHHHHHHhccCceEEEcCCC
Confidence 68999999987 457788899888873 5689999999 559999999999999998 9999999999
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc-hhHHHHH
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN-LVYLQQV 152 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~-~~~~~~~ 152 (821)
+..+.++.+++...++|+|++.+++. ....++++||+.|++..++.++++++.++||+++++|+.++.+ ....+.+
T Consensus 79 s~~~~~~~~~~~~~~ip~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 155 (362)
T 3snr_A 79 TPPSVAISNVANEAQIPHIALAPLPI---TPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDL 155 (362)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSCCCC---CTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCccEEEecCCcc---ccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHH
Confidence 99999999999999999999876632 2556889999999999999999999999999999999987763 2233333
Q ss_pred HHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEeccc
Q psy16206 153 LENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTS 231 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~ 231 (821)
.+.+. ..|..+. ...++.+..|+...++++++.++++|++.+....+..++++++++|+..+ ++...+
T Consensus 156 ~~~l~-------~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g- 224 (362)
T 3snr_A 156 KKQGE-------AMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHG- 224 (362)
T ss_dssp HHHHH-------HTTCEEEEEEEECTTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGG-
T ss_pred HHHHH-------HcCCEEEEEeecCCCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccC-
Confidence 33333 3356654 44577778899999999999999999999989999999999999999754 343332
Q ss_pred ccccccccCcccccCCceeeEEEEe-------ec---CCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHH
Q psy16206 232 YWINAHTVDFQDFQPGYANITTVRM-------IN---PTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVY 301 (821)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~ 301 (821)
.+.... .........|+..... +. +.++..++|.++|+++++.+ .++.+++.+|||++
T Consensus 225 --~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---------~p~~~~~~~yda~~ 292 (362)
T 3snr_A 225 --AASMDF-IRIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGPS---------SRSQFAGHSYDAFK 292 (362)
T ss_dssp --GCSHHH-HHHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCTT---------CCCHHHHHHHHHHH
T ss_pred --cCcHHH-HHHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCCC---------CCCchhHhHHHHHH
Confidence 211110 0111122345544432 11 22356899999999988542 36788999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhc-eeccceeeEEEeCCCCcc--ceeEEEEEEEeecceEEE
Q psy16206 302 LFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSI-TIDGMTGRINLDSQTGRR--NSFSLEFVEYVSDQWKVL 377 (821)
Q Consensus 302 ~~a~Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~~~G~tG~i~fd~~~g~~--~~~~~~i~~~~~~~~~~v 377 (821)
++++|++++++. ...+.+.++..++++|++. +|+|++|+++|++ ++++ .+..+.++++++|+++.|
T Consensus 293 ~~~~al~~a~~~---------~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~-~~~~g~~~~~~~i~~~~~G~~~~v 361 (362)
T 3snr_A 293 VLERVVPVALKK---------AKPGTQEFREALREAFLTEKDIAASQGVYNFTE-TDRYGLDDRSRILLTVKNGKYVIV 361 (362)
T ss_dssp HHHHHHHHHHHH---------CCTTSHHHHHHHHHHHHHCCCEECSSCEECCCS-SCSSCCCGGGCEEEEEETTEEEEC
T ss_pred HHHHHHHHhhcc---------ccCCCcchHHHHHHHHHhcCCcccceeeEEeCC-CCCCCCCCCCeEEEEEECCEEEEc
Confidence 999999999631 0012245578999999998 8999999999998 6554 346688999998887654
No 36
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.92 E-value=1.4e-26 Score=239.57 Aligned_cols=245 Identities=41% Similarity=0.686 Sum_probs=191.9
Q ss_pred CceEEEEeeccceeeeeecCCCceeecCCC-----CCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchH
Q psy16206 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPET-----GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 478 (821)
Q Consensus 405 ~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~-----~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~ 478 (821)
+++|+|++. .+|||.+.++++ ++++ |+++||++++++++|++++++.+|++.||..++.+++|++
T Consensus 3 ~~~l~v~~~---------~~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~ 73 (259)
T 3g3k_A 3 NRSLIVTTI---------LEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNG 73 (259)
T ss_dssp CCCEEEEEC---------CBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCH
T ss_pred CcEEEEEEe---------cCCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchH
Confidence 345566665 789999976541 3588 9999999999999999999999999999998876789999
Q ss_pred HHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHh
Q psy16206 479 LIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFF 558 (821)
Q Consensus 479 ~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~ 558 (821)
++.+|++|++|++++++++|++|++.++||.||+..+.+++++++.+ ..++ +.+.....-. +++..+.....++
T Consensus 74 ~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~-i~~~-~dL~g~~~~~----ig~~~~~~~~~~~ 147 (259)
T 3g3k_A 74 MVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTP-IDSA-DDLAKQTKIE----YGAVEDGATMTFF 147 (259)
T ss_dssp HHHHHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSS-CCSH-HHHHTCSSSE----EEEETTSHHHHHH
T ss_pred HHHHHhcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCcc-ccCH-HHhccCCCce----EEEecCcHHHHHH
Confidence 99999999999998889999999999999999999999999998865 3332 2223221000 0000111111111
Q ss_pred hhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeecce
Q psy16206 559 LARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGGL 638 (821)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~~ 638 (821)
.+ .....|..++..+......+.+++.++++++|.. |+ |+++.+...+.+++++.+++.+++..
T Consensus 148 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~-da~i~~~~~~~~~~~~~~~l~~~~~~ 211 (259)
T 3g3k_A 148 KR--------------SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT-SD-YAFLMESTTIEFVTQRNCNLTQIGGL 211 (259)
T ss_dssp HH--------------CCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHH-SS-EEEEEEHHHHHHHHHHCTTEEEESSC
T ss_pred hh--------------ccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHh-CC-eEEEechHHHHHHhcCCceEEEeccc
Confidence 11 1223455555555544445677899999999999 78 99999999999999998999999988
Q ss_pred ecCCCcccccCC-chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 639 LDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 639 ~~~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
+...+++++++| ++|++.||++|.+|++ +|++.+|++||++.
T Consensus 212 ~~~~~~~~a~~k~~~l~~~in~~l~~l~~--~G~~~~i~~kw~~~ 254 (259)
T 3g3k_A 212 IDSKGYGVGTPMGSPYRDKITLAILKLQE--QGKLHMMKEKWWRG 254 (259)
T ss_dssp SSCEEECCEEETTCTHHHHHHHHHHHHHH--TC-CHHHHHHHHCC
T ss_pred ceeeeEEEEECCCCccHHHHHHHHHHHHh--cChHHHHHHhhcCC
Confidence 888999999999 6699999999999999 99999999999973
No 37
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.92 E-value=1.3e-23 Score=222.56 Aligned_cols=301 Identities=14% Similarity=0.097 Sum_probs=220.7
Q ss_pred cEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~ 75 (821)
|||+++|+|| ..+++|+++|. . |.+++++++| +.+++ +.+++.+++++||.+||||.+|.
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~-----~------G~~i~l~~~D-~~~~~--a~~~~~~l~~~~v~~IiGp~~s~ 67 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK-----G------NSTIPVQVFD-TSMNS--VQDIIAQAKQAGIKTLVGPLLKQ 67 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH-----T------TCCSCEEEEE-TTTSC--HHHHHHHHHHTTCCEEECCCSHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc-----c------CCCceEEEEE-CCCCh--HHHHHHHHHHCCCCEEEeeCCHH
Confidence 8999999999 77888999886 1 4589999999 54777 67788888877999999999999
Q ss_pred hHHHHHHHh-ccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHH----H
Q psy16206 76 NRNIIESMC-QMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYL----Q 150 (821)
Q Consensus 76 ~~~~v~~i~-~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~----~ 150 (821)
.+.++.+++ ...+||+|++++++.. ....+.|.||+.|.+ +++++++++...|.|+++||++++++...+ +
T Consensus 68 ~~~a~~~~~~~~~~vp~i~~~~~~~~--~~~~~~~~f~~~~~~--~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~ 143 (325)
T 2h4a_A 68 NLDVILADPAQIQGMDVLALNATPNS--RAIPQLCYYGLSPED--EAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFN 143 (325)
T ss_dssp HHHHHHHCGGGGTTCEEEESCCCSSC--CCCTTEEECCCCHHH--HHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHhhhhccCCCcEEECCCCccc--cCCCCeEEEECCHHH--HHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHH
Confidence 999999998 7799999998765432 123466777766654 689999999889999999999988755444 4
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEecc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLT 230 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 230 (821)
+.+++.+ |..+..+.|++. .||...|+++ ..++|+|++.+.+.++..+.+++++.|... ..+.+++
T Consensus 144 ~~~~~~G---------g~vv~~~~y~~~-~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~~~---pl~~~~~ 209 (325)
T 2h4a_A 144 VRWQQLA---------GTDANIRYYNLP-ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVPNL---AIYASSR 209 (325)
T ss_dssp HHHHHHH---------SSCCEEEEESST-THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCTTC---EEEECGG
T ss_pred HHHHHcC---------CCcceeEecCCH-HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCCCC---CEEEecc
Confidence 4444444 444556677764 7999999999 479999999999999998888888775533 2333331
Q ss_pred ccccc--ccccCcccccCCceeeEEEE---eecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHH
Q psy16206 231 SYWIN--AHTVDFQDFQPGYANITTVR---MINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAA 305 (821)
Q Consensus 231 ~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~ 305 (821)
+. .... ........+|+.-.. +..++.+.+++|.++|+..+ .+....+++|||+.++.+
T Consensus 210 ---~~~~s~~~-~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~------------~~~rl~AlgyDA~~l~~~ 273 (325)
T 2h4a_A 210 ---ASASATNT-NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY------------QLMRLYAMGADAWLLINQ 273 (325)
T ss_dssp ---GCCHHHHT-CHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH------------HHHHHHHHHHHHHHHHHT
T ss_pred ---ccccCCCC-CchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc------------chHHHHHHHHHHHHHHHH
Confidence 22 1111 111112335554433 23456677889998886544 145567999999998665
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEE
Q psy16206 306 ALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLG 378 (821)
Q Consensus 306 Al~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG 378 (821)
+ .++. .+.+..|+|+||.++||+ +|+. ...+.+.++++|.++.|-
T Consensus 274 l-~~l~-------------------------~~~~~~~~G~tG~l~~~~-~g~~-~R~l~~~~~~~G~~~~~~ 318 (325)
T 2h4a_A 274 F-NELR-------------------------QVPGYRLSGLTGILSADT-NCNV-ERDMTWYQYQDGAIVPVV 318 (325)
T ss_dssp H-HHHH-------------------------HSTTCCEEETTEEEEECT-TCBE-EEECEEEEEETTEEEECC
T ss_pred H-HHHh-------------------------hCCCCeeccCceeEEECC-CCeE-EEeechhhccCCeEEEee
Confidence 3 3222 233457999999999999 8876 478899999999877663
No 38
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.92 E-value=1.2e-23 Score=225.49 Aligned_cols=308 Identities=12% Similarity=0.039 Sum_probs=217.4
Q ss_pred CcEEEEeCCCc------hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc
Q psy16206 1 MKIVGIFGPNE------EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI 74 (821)
Q Consensus 1 i~IG~i~~~~~------~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s 74 (821)
+|||+++|+|| +.+++|+++|++ +.+++++++| +.++|..+ +++.+..+||.+||||.+|
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~-----------g~~i~l~~~D-~~~~~~~a--a~~~~~~~~v~~iiGp~~s 68 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG-----------NSTIPVQVFD-TSMNSVQD--IIAQAKQAGIKTLVGPLLK 68 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT-----------TCCSCEEEEE-TTTSCHHH--HHHHHHHTTCCEEECCCSH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC-----------CCCceEEEEe-CCCCHHHH--HHHHHHHcCCeEEEEcccc
Confidence 69999999999 667788888862 3468999999 55888654 2344445599999999999
Q ss_pred chHHHHHHHh-ccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHH----
Q psy16206 75 ENRNIIESMC-QMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYL---- 149 (821)
Q Consensus 75 ~~~~~v~~i~-~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~---- 149 (821)
..+.++.+.. +...+|+++.++++. ....+++||+.+++..+++++++++...|+|+++++++++++...+
T Consensus 69 ~~~~a~~~~~~~~~~v~~~~~~~~~~----~~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f 144 (327)
T 3ckm_A 69 QNLDVILADPAQIQGMDVLALNATPN----SRAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAF 144 (327)
T ss_dssp HHHHHHHHCGGGGTTCEEEESCCCTT----CCCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHH
T ss_pred ccchhhHHHHHhccCceEeccCcCcc----cccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHH
Confidence 8887776655 555667776544433 2346789999999999999999999999999999999999864444
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcceEEEEec
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
++.+++.+ +..+....++. .+....+.+++..++|+|++...+.++..+++|++++|+..+ ++.++
T Consensus 145 ~~~~~~~G---------g~vv~~~~~~~--~~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~~---~~~~~ 210 (327)
T 3ckm_A 145 NVRWQQLA---------GTDANIRYYNL--PADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNLA---IYASS 210 (327)
T ss_dssp HHHHHHHH---------SSCCEEEEESS--TTHHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECG
T ss_pred HHHHHHCC---------CeEEEEEECCC--CchhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccCC---EEeee
Confidence 44444444 34445556655 455677888899999999999999999999999999987543 44444
Q ss_pred ccccccccccCcccccCCceeeEEEE---eecCCChhHHHhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHH
Q psy16206 230 TSYWINAHTVDFQDFQPGYANITTVR---MINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAA 306 (821)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~A 306 (821)
+ |................++.... ...++.+..++|.++|+++++. ..+++++|||+.+++.+
T Consensus 211 ~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------------~~~~AlgyDA~~l~~~l 276 (327)
T 3ckm_A 211 R--ASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQL------------MRLYAMGADAWLLINQF 276 (327)
T ss_dssp G--GCCHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHHH------------HHHHHHHHHHHHHHHTH
T ss_pred c--cccccchhcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcCC------------CchHHHHHHHHHHHHHH
Confidence 2 11111111111111122333222 2345678899999999887632 23678899999887655
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCchhHHHhhhhceeccceeeEEEeCCCCccceeEEEEEEEeecceEEEEEEec
Q psy16206 307 LQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFSLEFVEYVSDQWKVLGTWNT 382 (821)
Q Consensus 307 l~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~~~G~tG~i~fd~~~g~~~~~~~~i~~~~~~~~~~vG~w~~ 382 (821)
.+... +....|+|+||.++||+ +|+. ...+.++++++|.++.|..-..
T Consensus 277 ~~~~~--------------------------~~~~~f~G~tG~i~fd~-~G~~-~r~l~~~~~~~G~~vpv~d~~~ 324 (327)
T 3ckm_A 277 NELRQ--------------------------VPGYRLSGLTGILSADT-NCNV-ERDMTWYQYQDGAIVPVVDHHH 324 (327)
T ss_dssp HHHHH--------------------------STTCCEEETTEEEEECT-TCBE-EEECEEEEEETTEEEECC----
T ss_pred HHhcC--------------------------CCCCCceeceEEEEECC-CCCC-ccccEEEEEECCEEEEcccccc
Confidence 44322 23346999999999999 8864 4778899999999888765443
No 39
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.92 E-value=5.4e-26 Score=242.12 Aligned_cols=269 Identities=38% Similarity=0.644 Sum_probs=191.2
Q ss_pred hhhhhhccCceEEEEeeccceeeeeecCCCceeecCC-----CCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccC
Q psy16206 397 KEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPE-----TGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLN 470 (821)
Q Consensus 397 ~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~-----~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~ 470 (821)
++++.++++++|+|++. .+|||.+.++. +++++ |+++||++++++++|++++++.++++.||..+
T Consensus 4 ~~l~~i~~~~~l~V~~~---------~~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~ 74 (312)
T 1yae_A 4 ANITDSLSNRSLIVTTI---------LEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQD 74 (312)
T ss_dssp CCCTTTTCSCEEEEEEC---------CBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBC
T ss_pred cchhhhhcCceEEEEEe---------ccCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceec
Confidence 46788899999999999 67999997520 12488 99999999999999999999999999999998
Q ss_pred CCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHH-
Q psy16206 471 PQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAY- 549 (821)
Q Consensus 471 ~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~- 549 (821)
+.+++|++++.+|.+|++|++++++++|++|++.++||.||+..+.+++++++.....+++.++.||...-. .+-..
T Consensus 75 ~~~~~~~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~p~--tv~~~~ 152 (312)
T 1yae_A 75 DVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPR--GSERME 152 (312)
T ss_dssp TTTCCBCSHHHHHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------
T ss_pred cCCCcchHHHHHHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccCCc--cccccc
Confidence 766799999999999999999888999999999999999999999999999986444566677776651100 00000
Q ss_pred HHHHHHHHhhhhcCCCcceeEeecCC--------ChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccc
Q psy16206 550 LGVSLLLFFLARISSGSRLRYSAKNS--------NVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTG 621 (821)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~ 621 (821)
.......-+..+ ..+ +++...... ....|..++..+........+.+.++++++|.+ |+ |+++.+...
T Consensus 153 ~~i~~~~dL~g~-~~~-~vg~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-G~-Da~i~~~~~ 228 (312)
T 1yae_A 153 SPIDSADDLAKQ-TKI-EYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT-SD-YAFLMESTT 228 (312)
T ss_dssp --CCSHHHHHTC-SSS-EEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHH-SS-EEEEEEHHH
T ss_pred CCCCCHHHHhhc-cCc-eEEEEeCChHHHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHc-CC-cEEEeccHH
Confidence 000000000000 000 011000000 111233333333222223467889999999999 88 999999999
Q ss_pred hhhhhhhcCCceeecceecCCCcccccCC-chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 622 IEYEVEKNCDLMQVGGLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
+.+++++.|++.+++..+...+++++++| ++|++.||++|.+|++ +|.+++|++||++.
T Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~--~G~~~~i~~kw~~~ 288 (312)
T 1yae_A 229 IEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQE--EGKLHMMKEKWWRG 288 (312)
T ss_dssp HHHHHTTCTTEEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHH--HTHHHHHHHHHHCC
T ss_pred HHHHHhcCCCEEEecccccccceEEEEeCCCCcHHHHHHHHHHHHH--cCCHHHHHhhhcCC
Confidence 99999888899998888888899999999 7799999999999999 99999999999975
No 40
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.91 E-value=1.6e-25 Score=229.30 Aligned_cols=228 Identities=18% Similarity=0.231 Sum_probs=178.6
Q ss_pred hhhhhhccCceEEEEeeccceeeeeecCCCceeec-CCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCC
Q psy16206 397 KEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKN-PETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTG 474 (821)
Q Consensus 397 ~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~-~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~ 474 (821)
+.++.++++|+|+|++.+ ++|||.|.+ .++.+++ ||++||++++++++|++++++.+
T Consensus 3 s~le~Ik~~g~L~Vg~~~--------~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~~~~~~~------------- 61 (243)
T 4h5g_A 3 SAVEAIKQKGKLVVATSP--------DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVKLEILSM------------- 61 (243)
T ss_dssp CHHHHHHHHTEEEEEECC--------CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSEEEEEEC-------------
T ss_pred CHHHHHHhCCEEEEEECC--------CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCceEEecc-------------
Confidence 568999999999999997 899999843 1222488 99999999999999999999965
Q ss_pred cchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHH
Q psy16206 475 KWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSL 554 (821)
Q Consensus 475 ~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~ 554 (821)
+|++++.+|.+|++|++++++++|++|++.++||.||+..+.++++++++.........+...+..+ .
T Consensus 62 ~~~~~~~~l~~g~~d~~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~~~~~~~dl~g~~i~v-------~----- 129 (243)
T 4h5g_A 62 SFDNVLTSLQTGKADLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVEKYKDLTSLESANIAA-------Q----- 129 (243)
T ss_dssp CGGGHHHHHHTTSCSEECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGTTTCCSHHHHHTSEEEE-------E-----
T ss_pred cHHHHHHHHHcCCCCcccccccCChhHccEEEccCccccCcccccccccccccccccccCCCCEEEe-------c-----
Confidence 5999999999999999988999999999999999999999999999987542222222223222111 0
Q ss_pred HHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCcee
Q psy16206 555 LLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQ 634 (821)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~ 634 (821)
....+...............+++..+++.+|.+ |++|+++.+...+.+++.++.++..
T Consensus 130 ---------------------~g~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~-GrvD~~~~d~~~~~~~~~~~~~~~~ 187 (243)
T 4h5g_A 130 ---------------------KGTVPESMVKEQLPKAQLTSLTNMGEAVNELQA-GKIDAVHMDEPVALSYAAKNAGLAV 187 (243)
T ss_dssp ---------------------TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-TSCSEEEEEHHHHHHHHHHCTTEEE
T ss_pred ---------------------CCcHHHHHHHHhcccceeEEeCCHHHHHHHHHc-CCccEEEecHHHHHHHHHHCCCCce
Confidence 111222222222222334577899999999999 9999999999999988887765443
Q ss_pred e--c-ceecCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCC
Q psy16206 635 V--G-GLLDSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETG 681 (821)
Q Consensus 635 ~--~-~~~~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g 681 (821)
. . ......+++|+++| ++|++.||++|.+|++ +|++++|++||++
T Consensus 188 ~~~~~~~~~~~~~~~a~~k~~~~L~~~~n~aL~~l~~--dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 188 ATVSLKMKDGDANAVALRKNSDDLKEVVDKVIQKLKD--EGTYQSYLEKAAS 237 (243)
T ss_dssp CSCCCCCCSSCCBCCEEESSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHTT
T ss_pred eeccCCcccCceEEEEEeCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHhcC
Confidence 2 2 34456789999999 7899999999999999 9999999999976
No 41
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.90 E-value=2.4e-25 Score=234.42 Aligned_cols=240 Identities=24% Similarity=0.379 Sum_probs=179.1
Q ss_pred CceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCC----CcchHH
Q psy16206 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQT----GKWNGL 479 (821)
Q Consensus 405 ~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~----~~~~~~ 479 (821)
.++++|++.+ .+|||.+.+.++ ++ ||++||+++|++++|++++++.++|++||..+..+ ++|+++
T Consensus 40 ~~~l~vg~~~--------~~~P~~~~~~~g--~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~ 109 (292)
T 1pb7_A 40 KKVICTGPND--------TSPGSPRHTVPQ--CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGM 109 (292)
T ss_dssp CCEEEEEEC----------------CEEEE--EEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHH
T ss_pred cceeecccCC--------CCCCcccccccc--CcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHH
Confidence 4788888887 899998865544 88 99999999999999999999999999999987655 489999
Q ss_pred HHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccc--cCchhHHHHHHHHHHHHHHHHH
Q psy16206 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLE--PLSFDVWVYMATAYLGVSLLLF 557 (821)
Q Consensus 480 ~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~vw~~~~~~~~~~~~~~~ 557 (821)
+.+|.+|++|++++++++|++|++.++||.||+..+.+++++++.. ..++.+ ++ ......+ .++..+.....+
T Consensus 110 ~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~-i~~~~d-l~~~g~~~~~~---~~~~~~~~~~~~ 184 (292)
T 1pb7_A 110 MGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTR-ITGIND-PRLRNPSDKFI---YATVKQSSVDIY 184 (292)
T ss_dssp HHHHHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCC-CCSTTC-HHHHSCBTTBC---EECBTTSHHHHH
T ss_pred HHHHHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcC-CCCCcC-ccccCcccceE---EEEEcCchHHHH
Confidence 9999999999998899999999999999999999999999998764 222211 11 0000000 000000010111
Q ss_pred hhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeecc
Q psy16206 558 FLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGG 637 (821)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~ 637 (821)
+.... .+..++..+ ....+.+.++++++|.+ |++||++.+...+.++++++|++.+++.
T Consensus 185 ~~~~~----------------~~~~~~~~~----~~~~~~~~~~~~~~l~~-G~vDa~i~d~~~~~~~~~~~~~l~~~~~ 243 (292)
T 1pb7_A 185 FRRQV----------------ELSTMYRHM----EKHNYESAAEAIQAVRD-NKLHAFIWDSAVLEFEASQKCDLVTTGE 243 (292)
T ss_dssp HHTCG----------------GGHHHHHHH----TTTCBSSHHHHHHHHHT-TSCSEEEEEHHHHHHHHHHCTTEEECSS
T ss_pred hhhcc----------------cHHHHHHHH----HhhcCCCHHHHHHHHHc-CCceEEEEcHHHHHHHHhcCCCEEEcCc
Confidence 11000 011111111 23467889999999998 9999999999999999999899998888
Q ss_pred eecCCCcccccCC-chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 638 LLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 638 ~~~~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
.+...+++++++| ++|++.||++|.++++ +|.+++|.+||++.
T Consensus 244 ~~~~~~~~ia~~k~~~l~~~in~al~~l~~--~G~~~~l~~kw~~~ 287 (292)
T 1pb7_A 244 LFFRSGFGIGMRKDSPWKQNVSLSILKSHE--NGFMEDLDKTWVRY 287 (292)
T ss_dssp CSEEEEECCEEETTCSSHHHHHHHHHHHHH--SSHHHHHHHHHTSS
T ss_pred cccCCceEEEEeCCCHHHHHHHHHHHHHHh--CCCHHHHHHhhCCC
Confidence 8888899999999 8899999999999999 99999999999863
No 42
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.90 E-value=2e-24 Score=221.10 Aligned_cols=223 Identities=15% Similarity=0.141 Sum_probs=168.1
Q ss_pred ccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHH
Q psy16206 403 IENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLI 480 (821)
Q Consensus 403 ~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 480 (821)
.+.++|+|++.. +||||.+.+++| ++ ||++||+++|+++| |++++++.. +|++++
T Consensus 6 ~~~~tl~vg~~~--------~~pP~~~~d~~G--~~~G~~vdl~~~ia~~l~g~~~~~~~~-------------~~~~~~ 62 (243)
T 4gvo_A 6 QKVQTITVGTGT--------QFPNVCFLDENG--KLTGYDVELVKEIDKRLPGYKFKFKTM-------------DFSNLL 62 (243)
T ss_dssp --CEEEEEEECS--------EETTTEEECTTS--CEESHHHHHHHHHHHTCTTEEEEEEEC-------------CGGGHH
T ss_pred ccCCeEEEEECC--------CCCCeEEECCCC--cEEEhHHHHHHHHHHhccCCeEEEEEC-------------CHHHHH
Confidence 355788888877 899999988765 89 99999999999998 999999965 599999
Q ss_pred HHHHcCCcceEEeccccchhhhcceeecccceeeceEEE-EEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhh
Q psy16206 481 GELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISIL-YRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFL 559 (821)
Q Consensus 481 ~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~ 559 (821)
.+|++|++|++++++++|++|++.++||.||+.....++ +++......+ .+.+...+..+ ..
T Consensus 63 ~~l~~g~~D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~-~~dL~g~~v~v-------~~--------- 125 (243)
T 4gvo_A 63 VSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINS-TKDLAGKRVIT-------SA--------- 125 (243)
T ss_dssp HHHHTTSCSEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETTCCSCSS-GGGGTTCEEEE-------CT---------
T ss_pred HHHHCCCCCEecccCCCCHHHhhhhhhhhhhcccccceEEEeccccccCc-hHHhcCCeEEE-------ec---------
Confidence 999999999998889999999999999999776655544 4444432322 23334333221 00
Q ss_pred hhcCCCcceeEeecCCChHHH-HHHHHhhhccCC-cccccCchhHHHHHHhccCceEEEecccchhhhhhhcC-Cceeec
Q psy16206 560 ARISSGSRLRYSAKNSNVSLY-QRMHSAMESSRP-SVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC-DLMQVG 636 (821)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~-~~~~~~ 636 (821)
......+ ..+......... .....+..+++.+|.. |++|+++.+...+.++.++.. ...+++
T Consensus 126 --------------gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-GrvDa~i~~~~~~~~~~~~~~~~~~~~~ 190 (243)
T 4gvo_A 126 --------------TSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKT-GRADATISTPFAVDFQNKTSAIKEKVVG 190 (243)
T ss_dssp --------------TCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHH-TSCSBEEECHHHHHHHHHTCSSCEEEEE
T ss_pred --------------CchHHHHHHHHHHhccccceeccccCChHHHHHHHHc-CCccEEEccHHHHHHHHhhCCCceEEec
Confidence 0111111 111111111111 1245678899999998 999999999999998888764 677777
Q ss_pred ceecCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 637 GLLDSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 637 ~~~~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
..+...+++++++| ++|++.||++|.+|++ +|++++|++||||.
T Consensus 191 ~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~--~G~~~~i~~kw~g~ 236 (243)
T 4gvo_A 191 DVLSNAKVYFMLGKDETKLSKKVDEALQSIID--DGTLKKLSEKWLGA 236 (243)
T ss_dssp EEEECCEECCEECTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHCG
T ss_pred cCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHh--CcHHHHHHHHHCCC
Confidence 78888999999999 8899999999999999 99999999999984
No 43
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.88 E-value=7.3e-24 Score=219.73 Aligned_cols=246 Identities=39% Similarity=0.575 Sum_probs=186.4
Q ss_pred ceEEEEeeccceeeeeecCCCceeecCC-----CCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHH
Q psy16206 406 RTLTVTSKTFAKLRVLFQGEPYMMKNPE-----TGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479 (821)
Q Consensus 406 ~~l~v~~~~g~~lrVgv~~~P~~~~~~~-----~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 479 (821)
++|+|++. ++|||.+.+++ +++++ |+++|+++++++++|++++++.++++.||..++...+|+++
T Consensus 4 ~~l~v~~~---------~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~ 74 (263)
T 1mqi_A 4 KTVVVTTI---------LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGM 74 (263)
T ss_dssp CCEEEEEC---------CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHH
T ss_pred eEEEEEEe---------cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHH
Confidence 45556555 89999997653 12488 99999999999999999999999989999988755589999
Q ss_pred HHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhh
Q psy16206 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFL 559 (821)
Q Consensus 480 ~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~ 559 (821)
+.+|++|++|++++++++|++|.+.++||.||+..+.+++++++.+ ..++ +.+...+... +++....+...++.
T Consensus 75 ~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~-i~~~-~dL~g~~~~~----ig~v~~~~~~~~~~ 148 (263)
T 1mqi_A 75 VGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP-IESA-EDLSKQTEIA----YGTLDSGSTKEFFR 148 (263)
T ss_dssp HHHHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCS-CCSH-HHHHTCSSSE----EECBSSSHHHHHHH
T ss_pred HHHHHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCccc-cCCH-HHHhcccCee----EEEEeccHHHHHHH
Confidence 9999999999998789999999999999999999999999998765 2332 2233222000 00000000011111
Q ss_pred hhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHH--HhccCceEEEecccchhhhhhhc-CCceeec
Q psy16206 560 ARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERV--VKEKGKYAFFMESTGIEYEVEKN-CDLMQVG 636 (821)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~g~~da~i~~~~~~~~~~~~~-~~~~~~~ 636 (821)
+. ....|..++..+......+.+.+..+++++| .. |+ |+++.+...+.+++++. +++.+++
T Consensus 149 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~-da~~~~~~~~~~~~~~~~~~~~~~~ 212 (263)
T 1mqi_A 149 RS--------------KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSK-GK-YAYLLESTMNEYIEQRKPCDTMKVG 212 (263)
T ss_dssp HC--------------CSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTT-TS-EEEEEEHHHHHHHTTSTTCCEEEES
T ss_pred hc--------------cchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcC-Cc-EEEEechHHHHHHHhcCCCceEEcC
Confidence 10 1123444444444444556788999999999 66 77 89999999998888775 4677777
Q ss_pred ceecCCCcccccCC-chhhcccccceeEEEEeecCCccccccCCCCCcc
Q psy16206 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGELY 684 (821)
Q Consensus 637 ~~~~~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~~ 684 (821)
..+...+++++++| ++|++.||++|.++++ +|++.+|++||++...
T Consensus 213 ~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~--~g~~~~i~~k~~~~~~ 259 (263)
T 1mqi_A 213 GNLDSKGYGIATPKGSSLGNAVNLAVLKLNE--QGLLDKLKNKWWYDKG 259 (263)
T ss_dssp CCSCCEEECCEEETTCTTHHHHHHHHHHHHH--TTHHHHHHHHHHTTTC
T ss_pred CcccccceEEEEeCCCccHHHHHHHHHHHHh--cccHHHHHHHHcCCCC
Confidence 77778899999999 8899999999999999 9999999999987543
No 44
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.88 E-value=6.5e-23 Score=212.65 Aligned_cols=250 Identities=27% Similarity=0.468 Sum_probs=178.4
Q ss_pred cceeeeee-cCCCceeecCC--C-CCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcc
Q psy16206 415 FAKLRVLF-QGEPYMMKNPE--T-GELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRAD 489 (821)
Q Consensus 415 g~~lrVgv-~~~P~~~~~~~--~-~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~D 489 (821)
|++||||+ .+|||.+.+++ + .+++ |+++|+++++++++|++++++.++++.||.... .++|++++.+|.+|++|
T Consensus 2 ~~~l~v~~~~~pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~g~~D 80 (265)
T 2v3u_A 2 GVVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQE-DGTWNGLVGELVFKRAD 80 (265)
T ss_dssp CCEEEEEECCBTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCT-TSCBCHHHHHHHTTSCS
T ss_pred CeEEEEEEeccCCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCC-CCCcchHHHHHHcCCcC
Confidence 34445554 77999996554 1 1488 999999999999999999999999999998754 77999999999999999
Q ss_pred eEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhh-cCCCcce
Q psy16206 490 LAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLAR-ISSGSRL 568 (821)
Q Consensus 490 i~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~ 568 (821)
++++++++|++|.+.++||.||+..+.+++++++++ ..++.+ +. ..+++. .++........++.+. +.+
T Consensus 81 ~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~-i~~~~d-L~---~~v~v~-~g~~~~~~~~~~l~~~~~~~---- 150 (265)
T 2v3u_A 81 IGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTS-IQSLQD-LS---KQTDIP-YGTVLDSAVYQHVRMKGLNP---- 150 (265)
T ss_dssp EECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCC-CCSHHH-HH---TCSSSC-EECBTTSHHHHHHHHHHTCT----
T ss_pred eEEeeeEeehhhhccccccceeeeccEEEEEECCCC-ccchhh-hh---hhhcEE-EEEeccHHHHHHHHhcCCCc----
Confidence 998889999999999999999999999999998765 223222 21 111100 0000000001111110 100
Q ss_pred eEeecCCChHHHHHHHHhhhccC-CcccccCchhHHHHHHhccCceEEEecccchhhhhhhc--CCceeecceecCCCcc
Q psy16206 569 RYSAKNSNVSLYQRMHSAMESSR-PSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN--CDLMQVGGLLDSKGYG 645 (821)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 645 (821)
......|..++..+.... ....+.+.++++++|.+ |++ +++.+...+.+++++. +++.+++..+...+++
T Consensus 151 -----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~-G~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 223 (265)
T 2v3u_A 151 -----FERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKY-GNY-AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYG 223 (265)
T ss_dssp -----TCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHH-SSC-EEEEEHHHHHHHHHHCTTCCEEEEC---CCEEEC
T ss_pred -----ccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHc-CCE-EEEEcchHHHHHHhcCCCccEEEeccccCCcceE
Confidence 000112333333332111 12467789999999999 899 8999999999988764 4688888778888999
Q ss_pred cccCC-chhhcccccceeEEEEeecCCccccccCCCCCcc
Q psy16206 646 IAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGELY 684 (821)
Q Consensus 646 ~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~~ 684 (821)
++++| ++|++.||++|.+|++ +|.+.+|++||++...
T Consensus 224 ~~~~k~~~l~~~in~~l~~l~~--~g~~~~i~~kw~~~~~ 261 (265)
T 2v3u_A 224 IALQHGSPYRDVFSQRILELQQ--SGDMDILKHKWWPKNG 261 (265)
T ss_dssp CEEETTCTTHHHHHHHHHHHHH--HTHHHHHHHHHCCCCC
T ss_pred EEEeCCCccHHHHHHHHHHHhh--CChHHHHHhhcCCCcC
Confidence 99999 6699999999999999 9999999999998543
No 45
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.87 E-value=5.7e-23 Score=216.63 Aligned_cols=211 Identities=25% Similarity=0.508 Sum_probs=164.6
Q ss_pred e-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeece
Q psy16206 438 Y-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGI 516 (821)
Q Consensus 438 ~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~ 516 (821)
+ |+++||+++|++++|++++++.+++++||... .++|++++.+|.+|++|++++++++|++|++.++||.||+..+.
T Consensus 68 ~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~--~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~ 145 (294)
T 2rc8_A 68 CYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWK--NGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSL 145 (294)
T ss_dssp EESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEE--TTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEE
T ss_pred ceEEhHHHHHHHHHHcCCcEEEEECCCCcccccC--CCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcce
Confidence 8 99999999999999999999999999999853 56899999999999999998889999999999999999999999
Q ss_pred EEEEEcCCCCCCCcccccc------cCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhcc
Q psy16206 517 SILYRKPAKKQPDLFSFLE------PLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESS 590 (821)
Q Consensus 517 ~l~~~~~~~~~~~~~~~l~------~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (821)
++++++++....++.+ ++ ..+.. +..+.....++.+.+ ..+...+.
T Consensus 146 ~i~~~~~~~~i~~~~d-L~~~~~~~g~~vg-------~~~gs~~~~~l~~~~------------------~~~~~~i~-- 197 (294)
T 2rc8_A 146 GILVRTRGTELSGIHD-PKLHHPSQGFRFG-------TVRESSAEDYVRQSF------------------PEMHEYMR-- 197 (294)
T ss_dssp EEEEETTSCCCCSTTC-HHHHSCCTTCCEE-------CBTTSHHHHHHHHHC------------------HHHHHHHG--
T ss_pred EEEEECCCCCcCChhh-hhhcCcccCeEEE-------EEcCChHHHHHHHHH------------------HHHHHHHH--
Confidence 9999987632333222 22 22211 111111111111100 01111111
Q ss_pred CCcccccCchhHHHHHHhc-cCceEEEecccchhhhhhhc--CCceeecceecCCCcccccCC-chhhcccccceeEEEE
Q psy16206 591 RPSVFVKSNKEGVERVVKE-KGKYAFFMESTGIEYEVEKN--CDLMQVGGLLDSKGYGIAMPT-SKFLAKFSFGFAKLRV 666 (821)
Q Consensus 591 ~~~~~~~~~~~~~~~v~~~-g~~da~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~k-~~l~~~in~al~~l~~ 666 (821)
...+.+.++++++|.++ |++|+++.+...+.+++++. |++.+++..+...+++|+++| ++|++.||++|.++++
T Consensus 198 --~~~~~~~~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~ 275 (294)
T 2rc8_A 198 --RYNVPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKS 275 (294)
T ss_dssp --GGCBSSHHHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHH
T ss_pred --HhcCCCHHHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHh
Confidence 12467889999999864 79999999999999998864 578888888888899999999 8899999999999999
Q ss_pred eecCCccccccCCCCC
Q psy16206 667 LFQGEPYMMKNPETGE 682 (821)
Q Consensus 667 ~~~g~~~~i~~k~~g~ 682 (821)
+|.+++|++||++.
T Consensus 276 --~G~~~~l~~kw~~~ 289 (294)
T 2rc8_A 276 --HGFMDVLHDKWYKV 289 (294)
T ss_dssp --TTHHHHHHHHHCCC
T ss_pred --CCCHHHHHHhhcCC
Confidence 99999999999973
No 46
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.87 E-value=3.4e-23 Score=211.25 Aligned_cols=229 Identities=14% Similarity=0.195 Sum_probs=181.2
Q ss_pred chhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCC
Q psy16206 396 DKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTG 474 (821)
Q Consensus 396 ~~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~ 474 (821)
...+..+.++++|+|++.. ++|||.+.+++| ++ |+++|+++++++++|++++++.+
T Consensus 5 ~~~l~~i~~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~------------- 61 (239)
T 3kbr_A 5 ESRLDRILESGVLRVATTG--------DYKPFSYRTEEG--GYAGFDVDMAQRLAESLGAKLVVVPT------------- 61 (239)
T ss_dssp CCHHHHHHHHTEEEEEECS--------EETTTEEECTTS--CEESHHHHHHHHHHHHTTCEEEEEEC-------------
T ss_pred cchHHHHhhCCeEEEEECC--------CCCCeeEECCCC--CEEeehHHHHHHHHHHHCCceEEEEe-------------
Confidence 3568888899999999986 799999987654 88 99999999999999999999965
Q ss_pred cchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHH
Q psy16206 475 KWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSL 554 (821)
Q Consensus 475 ~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~ 554 (821)
+|.+++.+|++|++|+++++++.|++|++.+.||.||+..+.++++++++.......+.++..+..+ ++
T Consensus 62 ~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~i~~~~dL~~~g~~v-----~~------ 130 (239)
T 3kbr_A 62 SWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDQPGVTA-----IV------ 130 (239)
T ss_dssp CTTTHHHHHHTTCCSEECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGGGGGGSSHHHHSSTTCEE-----EE------
T ss_pred CHHHHHHHHHCCCcCEEEeCCcCCHHHcCccccchHHhccCcEEEEECCcccccCCHHHhcCCCcEE-----EE------
Confidence 5999999999999999988899999999999999999999999999987532111222222111111 00
Q ss_pred HHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCcee
Q psy16206 555 LLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQ 634 (821)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~ 634 (821)
.....+...............+++..+++++|.+ |++|+++.+...+.+++++.+++.+
T Consensus 131 --------------------~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-grvDa~~~~~~~~~~~~~~~~~~~~ 189 (239)
T 3kbr_A 131 --------------------NPGGTNEKFARANLKKARILVHPDNVTIFQQIVD-GKADLMMTDAIEARLQSRLHPELCA 189 (239)
T ss_dssp --------------------CTTSHHHHHHHHHCSSSEEEECCCTTTHHHHHHT-TSCSEEEEEHHHHHHHHHHCTTEEE
T ss_pred --------------------cCCCcHHHHHHHhCCCCceEEeCCHHHHHHHHHc-CCcCEEEEchHHHHHHHHhCCCcEE
Confidence 1111223333332222333467789999999999 9999999999999999998777766
Q ss_pred ec--ceecCCCcccccCC-chhhcccccceeEEEEeecCCccccccCCCC
Q psy16206 635 VG--GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETG 681 (821)
Q Consensus 635 ~~--~~~~~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g 681 (821)
+. ..+...+++++++| ++|++.||++|.++++ +|++.+|++||++
T Consensus 190 ~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~~l~~--~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 190 VHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQ--SGLLRQRMEHWLE 237 (239)
T ss_dssp CCCC-CCCCEEECCEECSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHC-
T ss_pred ecCCCCccccceEEEEcCCHHHHHHHHHHHHHHHH--CCcHHHHHHHHhc
Confidence 65 34677899999999 9999999999999999 9999999999986
No 47
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.86 E-value=1.5e-22 Score=205.57 Aligned_cols=211 Identities=19% Similarity=0.249 Sum_probs=171.1
Q ss_pred CceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHH
Q psy16206 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGEL 483 (821)
Q Consensus 405 ~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 483 (821)
.++|+|++.. ++|||.+.+++| ++ |+++|+++++++++|++++++.. +|++++.+|
T Consensus 4 a~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l 60 (232)
T 3i6v_A 4 ADTVRMGTEG--------AYPPYNFINDAG--EVDGFERELGDELCKRAGLTCEWVKN-------------DWDSIIPNL 60 (232)
T ss_dssp --CEEEEECS--------EETTTEEECTTS--CEESHHHHHHHHHHHHHTCCEEEEEC-------------CGGGHHHHH
T ss_pred CCEEEEEECC--------CCCCeeEECCCC--CEeeehHHHHHHHHHHcCCceEEEEC-------------CHHHHHHHH
Confidence 3566666665 799999987655 88 99999999999999999999965 599999999
Q ss_pred HcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcC
Q psy16206 484 QEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARIS 563 (821)
Q Consensus 484 ~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~ 563 (821)
++|++|+++++++.|++|++.++||.||+....++++++++. ..++. +..+ .
T Consensus 61 ~~g~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------~dL~g-~igv-------~-------------- 112 (232)
T 3i6v_A 61 VSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSDG------ADLSG-IVAA-------Q-------------- 112 (232)
T ss_dssp HTTSCSEECSSCBCCHHHHTTSEEEEEEECCCEEEEEESSTT------CCTTS-EEEE-------E--------------
T ss_pred HCCCCCEEEeCCcCCHHHHhhcCcccccccCCeEEEEECCCh------HHhCC-CEEE-------e--------------
Confidence 999999988889999999999999999999999999998751 12232 2111 0
Q ss_pred CCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc-CCceeecc-eecC
Q psy16206 564 SGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN-CDLMQVGG-LLDS 641 (821)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~-~~~~~~~~-~~~~ 641 (821)
....+....... +.....+++.++++++|.+ |++|+++.+...+.+++++. .++.++.. .+..
T Consensus 113 ------------~g~~~~~~l~~~--~~~~~~~~~~~~~~~~L~~-GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (232)
T 3i6v_A 113 ------------TATIQAGYIAES--GATLVEFATPEETIAAVRN-GEADAVFADRDYLVPIVAESGGELMFVGDDVPLG 177 (232)
T ss_dssp ------------TTSHHHHHHHHS--SSEEEEESSHHHHHHHHHT-TSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECS
T ss_pred ------------cCchHHHHHHhc--CCeEEEeCCHHHHHHHHHc-CCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCC
Confidence 111222233322 2334467899999999999 99999999999999999886 67777775 4677
Q ss_pred CCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCCc
Q psy16206 642 KGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGEL 683 (821)
Q Consensus 642 ~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~ 683 (821)
.+++++++| ++|++.||++|.++++ +|++.+|++||++..
T Consensus 178 ~~~~~~~~k~~~~l~~~ln~~l~~l~~--~G~~~~i~~k~~~~~ 219 (232)
T 3i6v_A 178 GGVGMGLRESDGELRGKFDAAITSMKE--DGTLNTMIKKWFGED 219 (232)
T ss_dssp SCEEEEECTTCHHHHHHHHHHHHHHHH--TSHHHHHHHHHHCTT
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHH--CChHHHHHHHHcCCC
Confidence 899999999 7899999999999999 999999999999853
No 48
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.86 E-value=9.7e-23 Score=213.69 Aligned_cols=212 Identities=25% Similarity=0.437 Sum_probs=160.6
Q ss_pred ce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeec
Q psy16206 437 LY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLG 515 (821)
Q Consensus 437 ~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~ 515 (821)
++ |+++|+++++++++|++++++.++++.||.. .+++|++++.+|.+|++|++++++++|++|.+.++||.||+..+
T Consensus 56 ~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~--~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~ 133 (284)
T 2a5s_A 56 CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKK--VNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETG 133 (284)
T ss_dssp EEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCE--ETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEEC
T ss_pred eeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcc--cCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCchhcC
Confidence 57 9999999999999999999999999999985 25689999999999999999889999999999999999999999
Q ss_pred eEEEEEcCCCCCCCcccccc-----cCc--hhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhh
Q psy16206 516 ISILYRKPAKKQPDLFSFLE-----PLS--FDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAME 588 (821)
Q Consensus 516 ~~l~~~~~~~~~~~~~~~l~-----~~~--~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (821)
.+++++++.. ..++.+ ++ .+. ..+ ++....+....+.+. +..+...+.
T Consensus 134 ~~~~~~~~~~-~~~~~d-l~~~~~~~l~~~~~v-----g~v~~~s~~~~l~~~------------------~~~~~~~i~ 188 (284)
T 2a5s_A 134 ISVMVSRGTQ-VTGLSD-KKFQRPHDYSPPFRF-----GTVPNGSTERNIRNN------------------YPYMHQYMT 188 (284)
T ss_dssp EEEEEETTCC-CCSTTS-HHHHSGGGSSSCCCE-----ECCTTSHHHHHHHTT------------------CHHHHHHHG
T ss_pred EEEEEECCcc-cccccc-cccCChhHcCCCceE-----EEEeCCchHHHHHHH------------------HHHHHHHHH
Confidence 9999998764 222111 11 000 011 000000000011110 001100111
Q ss_pred ccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc--CCceeec--ceecCCCcccccCC-chhhcccccceeE
Q psy16206 589 SSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN--CDLMQVG--GLLDSKGYGIAMPT-SKFLAKFSFGFAK 663 (821)
Q Consensus 589 ~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~a~~k-~~l~~~in~al~~ 663 (821)
. ....+.++++++|.+ |++|+++.+...+.+++++. |++..++ ..+...+++|+++| ++|++.||++|.+
T Consensus 189 ~----~~~~~~~~~l~~l~~-G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~ 263 (284)
T 2a5s_A 189 R----FNQRGVEDALVSLKT-GKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQ 263 (284)
T ss_dssp G----GCCSSHHHHHHHHHT-TSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHH
T ss_pred h----ccCCCHHHHHHHHHc-CCeeEEEEchHHHHHHHhcCCCCCEEEeCCccccccCceEEEecCCCHHHHHHHHHHHH
Confidence 0 012688999999998 99999999999999999875 5677664 46777899999999 9999999999999
Q ss_pred EEEeecCCccccccCCCCC
Q psy16206 664 LRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 664 l~~~~~g~~~~i~~k~~g~ 682 (821)
+++ +|.+++|++||++.
T Consensus 264 l~~--~g~~~~i~~kw~~~ 280 (284)
T 2a5s_A 264 FVG--DGEMEELETLWLTG 280 (284)
T ss_dssp HHH--HTHHHHHHHHHTCC
T ss_pred HHh--CChHHHHHHHhhhc
Confidence 999 99999999999874
No 49
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.86 E-value=4.2e-22 Score=202.86 Aligned_cols=217 Identities=18% Similarity=0.257 Sum_probs=172.7
Q ss_pred ceEEEEeeccceeeeeecCCCceee-cCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHH
Q psy16206 406 RTLTVTSKTFAKLRVLFQGEPYMMK-NPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGEL 483 (821)
Q Consensus 406 ~~l~v~~~~g~~lrVgv~~~P~~~~-~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 483 (821)
++|+|++.. ++|||.+. +++| ++ |+++|+++++++++|++++++.+ +|.+++.+|
T Consensus 3 ~~l~v~~~~--------~~~P~~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l 59 (237)
T 3kzg_A 3 LNLTIGTSK--------FNPPFEVWSGNNS--SLYGFDIDLMQEICRRLHATCTFEAY-------------IFDDLFPAL 59 (237)
T ss_dssp CEEEEEEES--------EETTTEECCCTTS--CCBSHHHHHHHHHHHHTTCEEEEEEE-------------CGGGHHHHH
T ss_pred ceEEEEECC--------CCCCeEEEeCCCC--CEeeehHHHHHHHHHHhCCceEEEEc-------------CHHHHHHHH
Confidence 456666664 69999998 6554 88 99999999999999999999976 599999999
Q ss_pred HcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcC
Q psy16206 484 QEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARIS 563 (821)
Q Consensus 484 ~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~ 563 (821)
.+|++|+++++++.+++|++.+.||.||+....++++++++. ..+ .+.++..+..+
T Consensus 60 ~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~-~~~-~~dL~g~~i~~---------------------- 115 (237)
T 3kzg_A 60 KNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSK-IST-FDDLHGKKIGV---------------------- 115 (237)
T ss_dssp HTTSSSEECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTCS-CCS-GGGGTTCEEEE----------------------
T ss_pred hCCCCCEEEEccccChhHhccceeeeeeeecceEEEEECCCC-CCC-HHHhCCCEEEE----------------------
Confidence 999999988889999999999999999999999999998866 333 23333332211
Q ss_pred CCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcC--------Cceee
Q psy16206 564 SGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC--------DLMQV 635 (821)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~--------~~~~~ 635 (821)
.. . ..+...............+.+.+++++++.+ |++|+++.+...+.+++++.+ ++.++
T Consensus 116 -------~~-g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 183 (237)
T 3kzg_A 116 -------RK-G---TPYARQVLSENRNNQVIFYELIQDMLLGLSN-NQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLI 183 (237)
T ss_dssp -------ET-T---STHHHHHHHTCSSCEEEEESSHHHHHHHHHT-TSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEE
T ss_pred -------ec-C---CHHHHHHHHhCCCCcEEEeCCHHHHHHHHHc-CCCCEEEeCcHHHHHHHHhCCccccccCCceEEe
Confidence 11 1 1111222211112233467889999999999 999999999999999998866 78888
Q ss_pred ccee-cCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCCc
Q psy16206 636 GGLL-DSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGEL 683 (821)
Q Consensus 636 ~~~~-~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~ 683 (821)
...+ ...+++++++| ++|++.||++|.++++ +|++.+|++||++..
T Consensus 184 ~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~--~G~~~~i~~k~~~~~ 232 (237)
T 3kzg_A 184 GKKISIGEGYSIMANPDQFVLIKKINKILLEMEA--DGTYLRLYSEYFEGH 232 (237)
T ss_dssp EEEEECTTCBCCEECGGGHHHHHHHHHHHHHHHH--SSHHHHHHHHHC---
T ss_pred cCccccCccEEEEEcCCCHHHHHHHHHHHHHHHH--CCcHHHHHHHHhCcc
Confidence 8777 88999999999 7899999999999999 999999999998743
No 50
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.85 E-value=4e-22 Score=204.17 Aligned_cols=220 Identities=20% Similarity=0.265 Sum_probs=175.1
Q ss_pred cCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHH
Q psy16206 404 ENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGE 482 (821)
Q Consensus 404 ~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 482 (821)
++++|+|++.. ++|||.+.+++| ++ |+++|+++++++++|++++++.+ +|.+++.+
T Consensus 3 ~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~ 59 (245)
T 3k4u_A 3 LRGELRVGLEP--------GYLPFEMKDKKG--NVIGFDVDLAREMAKAMGVKLKLVPT-------------SWDGLIPG 59 (245)
T ss_dssp CCSEEEEEECT--------TSTTTCEEETTT--EEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHH
T ss_pred cCCeEEEEECC--------CcCCeeEECCCC--CCccchHHHHHHHHHHhCCeEEEEEc-------------cHHHHHHH
Confidence 45778888876 899999987654 88 99999999999999999999975 59999999
Q ss_pred HHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccc--cCchhHHHHHHHHHHHHHHHHHhhh
Q psy16206 483 LQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLE--PLSFDVWVYMATAYLGVSLLLFFLA 560 (821)
Q Consensus 483 l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~vw~~~~~~~~~~~~~~~~~~ 560 (821)
|.+|++|+++++++.+++|.+.+.||.||+....++++++++.......+.++ ..+..+
T Consensus 60 l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~~~g~~i~v------------------- 120 (245)
T 3k4u_A 60 LVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVT------------------- 120 (245)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTSEECSCSEEECEEEEEETTTTTTCCSGGGGCCSSCEEEE-------------------
T ss_pred HhCCCcCEEEecCcCCHHHHhhcCcchhhheeceEEEEECCcccccCCHHHhccCCcEEEE-------------------
Confidence 99999999988899999999999999999999999999988532222223333 222111
Q ss_pred hcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc--CCceeecce
Q psy16206 561 RISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN--CDLMQVGGL 638 (821)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~--~~~~~~~~~ 638 (821)
. ....+.............+.+++..+++++|.+ |++|+++.+...+.+++++. ..+..+...
T Consensus 121 ----------~----~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~-GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~ 185 (245)
T 3k4u_A 121 ----------K----FGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLN-GKADMFIFDLPFNVAFMAQKGQGYLVHLDTS 185 (245)
T ss_dssp ----------E----TTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHS-SSSEEEEEEHHHHHHHHHHTTTTTEEEECCC
T ss_pred ----------e----CCcHHHHHHHhhCCcCCEEEeCCHHHHHHHHHc-CCCcEEEEcHHHHHHHHhcCCccceeecCCC
Confidence 1 111222222222222334567889999999998 99999999999999987765 366667777
Q ss_pred ecCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 639 LDSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 639 ~~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
+...+++++++| ++|++.||++|.++++ +|++++|++||++.
T Consensus 186 ~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~--~g~~~~i~~k~~~~ 229 (245)
T 3k4u_A 186 LTYEPLGWAIKKGDPDFLNWLNHFLAQIKH--DGSYDELYERWFVD 229 (245)
T ss_dssp CSCEEECCEECTTCHHHHHHHHHHHHHHHH--HSHHHHHHHHHHTC
T ss_pred cccccEEEEEcCCCHHHHHHHHHHHHHHHh--CcHHHHHHHHhcCc
Confidence 788899999999 7799999999999999 99999999999874
No 51
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.84 E-value=3e-21 Score=200.43 Aligned_cols=226 Identities=15% Similarity=0.195 Sum_probs=178.4
Q ss_pred chhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCC
Q psy16206 396 DKEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTG 474 (821)
Q Consensus 396 ~~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~ 474 (821)
...+..+.++++|+|++.. ++|||.+.+++| ++ |+++|+++++++++|++++++.++
T Consensus 22 ~~e~~~i~~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~lg~~~~~~~~~------------ 79 (267)
T 3mpk_A 22 AREQQWMADHPVVKVAVLN--------LFAPFTLFRTDE--QFGGISAAVLQLLQLRTGLDFEIIGVD------------ 79 (267)
T ss_dssp HHHHHHHHHCSEEEEEEET--------EETTTEECCTTC--CCBSHHHHHHHHHHHHHCCEEEEEEES------------
T ss_pred HHHHHHHHhCCcEEEEeCC--------CCCCeEEECCCC--cEeeeHHHHHHHHHHHHCCeEEEEecC------------
Confidence 3567888899999999996 799999987655 88 999999999999999999999765
Q ss_pred cchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHH
Q psy16206 475 KWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSL 554 (821)
Q Consensus 475 ~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~ 554 (821)
+|.+++.+|++|++|+++ +++.+++|.+.+.||.||+....+++++++.....+ .+.++..+..+
T Consensus 80 ~~~~~~~~l~~G~~D~~~-~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~i~~-~~dL~g~~i~v------------- 144 (267)
T 3mpk_A 80 TVEELIAKLRSGEADMAG-ALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVD-ADHLDGRTVAL------------- 144 (267)
T ss_dssp SHHHHHHHHHHTSCSEEE-EEECCGGGTTTEEECSCSEEECEEEEEESSTTSCSS-GGGCTTCEEEE-------------
T ss_pred CHHHHHHHHHCCCccEEe-cccCChhhhcceEechhhccCceEEEEECCCCCCCC-HHHHCCCEEEE-------------
Confidence 799999999999999975 799999999999999999999999999988543333 23333332211
Q ss_pred HHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc--CCc
Q psy16206 555 LLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN--CDL 632 (821)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~--~~~ 632 (821)
.. .. .+...............+++.++++++|.+ |++|+++.+...+.+++++. .++
T Consensus 145 ----------------~~-g~---~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~-GrvDa~i~~~~~~~~~~~~~~~~~l 203 (267)
T 3mpk_A 145 ----------------VR-NS---AAIPLLQRRYPQAKVVTADNPSEAMLMVAN-GQADAVVQTQISASYYVNRYFAGKL 203 (267)
T ss_dssp ----------------ET-TC---THHHHHHHHCTTSEEEEESSHHHHHHHHHH-TSCSEEEEEHHHHHHHHHHHCTTTE
T ss_pred ----------------eC-Cc---hhHHHHHHhCCCcEEEEeCCHHHHHHHHHc-CCCCEEEecHHHHHHHHHhcCCCce
Confidence 11 11 122222222112333467889999999999 99999999999999999873 467
Q ss_pred eeeccee-cCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 633 MQVGGLL-DSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 633 ~~~~~~~-~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
.+..... .+.+++++++| ++|++.||++|.++++ ++ +++|++||++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~--~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 204 RIASALDLPPAEIALATTRGQTELMSILNKALYSISN--DE-LASIISRWRGS 253 (267)
T ss_dssp EEEEECSSCCEEEEEEEETTCHHHHHHHHHHHHTSCH--HH-HHHHHHTTC--
T ss_pred EEEeccCCCceeEEEEEcCCCHHHHHHHHHHHHhCCH--HH-HHHHHHhhccC
Confidence 7766533 46789999999 7899999999999999 85 99999999975
No 52
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.84 E-value=3.4e-21 Score=196.75 Aligned_cols=220 Identities=16% Similarity=0.180 Sum_probs=174.9
Q ss_pred hhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHH
Q psy16206 401 EKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGL 479 (821)
Q Consensus 401 ~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 479 (821)
.+.+.++|+|++.. ++|||.+.+.+| ++ |+++|+++.+++++|++++++.+ +|.++
T Consensus 6 ~~~~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~ 62 (242)
T 3del_B 6 GDSNSEKFIVGTNA--------TYPPFEFVDKRG--EVVGFDIDLAREISNKLGKTLDVREF-------------SFDAL 62 (242)
T ss_dssp -----CEEEEEECS--------CBTTTBEECTTS--CEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGH
T ss_pred ccccCCcEEEEeCC--------CCCCeeEECCCC--CEEEeeHHHHHHHHHHcCCceEEEEc-------------CHHHH
Confidence 45567889999986 899999987655 88 99999999999999999999865 59999
Q ss_pred HHHHHcCCcceEEeccccchhhhcceeecccce--eeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHH
Q psy16206 480 IGELQEQRADLAICDLTITSERRAAVDFTMPFM--TLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLF 557 (821)
Q Consensus 480 ~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~ 557 (821)
+.+|++|++|++++++..+++|.+.+.| .||+ ..+.+++++++.. ..+ .+.++..+..+
T Consensus 63 ~~~l~~g~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~-i~~-~~dL~g~~i~v---------------- 123 (242)
T 3del_B 63 ILNLKQHRIDAVITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKGEN-KHP-LPLTQYRSVAV---------------- 123 (242)
T ss_dssp HHHHHTTSSSEECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEESCC-SCC-CCGGGSSCEEE----------------
T ss_pred HHHHhCCCcCEEEecCcCCHHHHhcccc-eeeeecCCceEEEEeCCCC-CCC-HHHhCCCEEEE----------------
Confidence 9999999999998789999999999999 9999 9999999998843 223 23334333221
Q ss_pred hhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeecc
Q psy16206 558 FLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGG 637 (821)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~ 637 (821)
. ....+....... .......+.+.++++++|.+ |++|+++.+...+.+++++.+.+.++..
T Consensus 124 -------------~----~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~L~~-g~vDa~~~~~~~~~~~~~~~~~~~~~~~ 184 (242)
T 3del_B 124 -------------Q----TGTYQEAYLQSL-SEVHIRSFDSTLEVLMEVMH-GKSPVAVLEPSIAQVVLKDFPALSTATI 184 (242)
T ss_dssp -------------E----TTSHHHHHHHHS-TTCCEEEESSHHHHHHHHHT-TSSSEEEECHHHHHHHGGGCTTEEEEEE
T ss_pred -------------E----cCcHHHHHHHhC-CCceEEEECCHHHHHHHHHc-CCCCEEEecHHHHHHHHHhCCCeEEecC
Confidence 0 111222222221 12333467889999999999 9999999999999999998877888877
Q ss_pred eecCCC----cccccCC--chhhcccccceeEEEEeecCCccccccCCCCCc
Q psy16206 638 LLDSKG----YGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGEL 683 (821)
Q Consensus 638 ~~~~~~----~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~ 683 (821)
.+...+ ++++++| ++|++.||++|.++++ +|++++|++||++..
T Consensus 185 ~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~--~g~~~~i~~k~~~~~ 234 (242)
T 3del_B 185 DLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRK--EGVLAELEQKWGLNN 234 (242)
T ss_dssp ECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHH--TTHHHHHHHHTTGGG
T ss_pred ccCcccccceEEEEEeCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHCCCC
Confidence 777777 9999999 7899999999999999 999999999999753
No 53
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.83 E-value=1.9e-21 Score=202.08 Aligned_cols=225 Identities=16% Similarity=0.232 Sum_probs=181.6
Q ss_pred hhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCc
Q psy16206 397 KEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGK 475 (821)
Q Consensus 397 ~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~ 475 (821)
..+..+.+.++|+|++.. ++|||.+.+++| ++ |+++|+++.+++++|++++++.+ +
T Consensus 12 ~~~~~i~~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~ 68 (268)
T 3hv1_A 12 DQWQTYTKEKKIKIGFDA--------TFVPMGYEEKDG--SYIGFDIDLANAVFKLYGIDVEWQAI-------------D 68 (268)
T ss_dssp CCHHHHHHHTEEEEEECT--------EETTTEEECTTS--CEECHHHHHHHHHHHTTTCEEEEEEC-------------C
T ss_pred chHHHhhcCCcEEEEECC--------CCCCceEECCCC--CEEEehHHHHHHHHHHhCCcEEEEEC-------------C
Confidence 567788888999999987 899999987654 88 99999999999999999999965 5
Q ss_pred chHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHH
Q psy16206 476 WNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLL 555 (821)
Q Consensus 476 ~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~ 555 (821)
|.+++.+|++|++|++++++..+++|++.+.||.||+....+++++++.. ..+ ...++..+..+ ..+
T Consensus 69 ~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~-i~~-~~dL~g~~i~v-------~~g---- 135 (268)
T 3hv1_A 69 WDMKETELKNGTIDLIWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSSG-IDS-VAGMAGKTLGA-------QAG---- 135 (268)
T ss_dssp GGGHHHHHHHTSCSEECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGGC-CCS-SGGGTTCCEEE-------ETT----
T ss_pred HHHHHHHHHCCCCCEEEecCccCHHHHhcCcCcHHHeeCceEEEEECCCC-CCC-HHHhCCCEEEE-------EeC----
Confidence 99999999999999998789999999999999999999999999998863 333 23334333221 111
Q ss_pred HHhhhhcCCCcceeEeecCCChHHHHHHHHh----hhc---cCCcccccCchhHHHHHHhccCceEEEecccchhhhhhh
Q psy16206 556 LFFLARISSGSRLRYSAKNSNVSLYQRMHSA----MES---SRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEK 628 (821)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~ 628 (821)
..+...... +.. ....+.+.+.++++++|.+ |++|+++.+...+.+++++
T Consensus 136 ----------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-GrvDa~i~~~~~~~~~~~~ 192 (268)
T 3hv1_A 136 ----------------------SSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNS-GRIDGLLIDRVYANYYLEK 192 (268)
T ss_dssp ----------------------CHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHH-TSCSEEEEEHHHHHHHHHH
T ss_pred ----------------------CchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHc-CCCCEEEeCHHHHHHHHHh
Confidence 111111111 111 1223467789999999999 9999999999999999887
Q ss_pred c---CCceeecceecCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 629 N---CDLMQVGGLLDSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 629 ~---~~~~~~~~~~~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
. +++.++...+...+++++++| ++|++.||++|.++++ +|++.+|++||++.
T Consensus 193 ~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~--~g~~~~i~~k~~~~ 249 (268)
T 3hv1_A 193 SGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKINQGFETLYK--NGEFQKISNKWFGE 249 (268)
T ss_dssp TTCGGGEEEEECSSCCEEECCEECTTCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHSS
T ss_pred CCCCCceEECCCCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHhcCC
Confidence 5 457777777788899999999 7899999999999999 99999999999974
No 54
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.83 E-value=4e-21 Score=193.83 Aligned_cols=212 Identities=18% Similarity=0.252 Sum_probs=164.0
Q ss_pred eeeeee--cCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEe
Q psy16206 417 KLRVLF--QGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAIC 493 (821)
Q Consensus 417 ~lrVgv--~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~ 493 (821)
+||||+ ++|||.+.++++ ++ |+++|+++++++++|++++++.. +|.+++.+|++|++|++++
T Consensus 3 ~l~v~~~~~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~ 67 (227)
T 3tql_A 3 TIKFATEATYPPYVYMGPSG--QVEGFGADIVKAVCKQMQAVCTISNQ-------------PWDSLIPSLKLGKFDALFG 67 (227)
T ss_dssp EEEEEECSCBTTTBEEC--C--CEESHHHHHHHHHHHHTTCEEEEEEC-------------CHHHHHHHHHHTSCSEECS
T ss_pred eEEEEEcCCCCCeeEECCCC--CcccchHHHHHHHHHHhCCeEEEEeC-------------CHHHHHHHHhCCCCCEEEe
Confidence 344444 699999987655 88 99999999999999999999965 5999999999999999988
Q ss_pred ccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeec
Q psy16206 494 DLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAK 573 (821)
Q Consensus 494 ~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (821)
++..+++|.+.+.||.||+....++++++++....+ .+.++..+..+ .
T Consensus 68 ~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~~~~-~~dL~g~~v~~-----------------------------~-- 115 (227)
T 3tql_A 68 GMNITTARQKEVDFTDPYYTNSVSFIADKNTPLTLS-KQGLKGKIIGV-----------------------------Q-- 115 (227)
T ss_dssp SCBCCTTGGGTEEECSCSBCCEEEEEEETTSCCCCS-TTTTTTCEEEE-----------------------------E--
T ss_pred cCcCCHhHHhheecccceeccceEEEEeCCCCCCCC-HHHhCCCEEEE-----------------------------E--
Confidence 899999999999999999999999999998763222 23333332211 0
Q ss_pred CCChHHHHHHHHhhhcc-CCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCC--ceeecceecC-----CCcc
Q psy16206 574 NSNVSLYQRMHSAMESS-RPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCD--LMQVGGLLDS-----KGYG 645 (821)
Q Consensus 574 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~ 645 (821)
....+.......... .....+.+.+++++++.+ |++|+++.+...+.+++++.+. +.++...... .+++
T Consensus 116 --~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (227)
T 3tql_A 116 --GGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTS-GRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVG 192 (227)
T ss_dssp --TTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTT-TSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBC
T ss_pred --ecccHHHHHHHhccccceEEEcCCHHHHHHHHHc-CCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceE
Confidence 111222222222222 334467889999999998 9999999999999999888653 7766654433 3568
Q ss_pred cccCC--chhhcccccceeEEEEeecCCccccccCCC
Q psy16206 646 IAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPET 680 (821)
Q Consensus 646 ~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~ 680 (821)
++++| ++|++.||++|.++++ +|++.+|++|||
T Consensus 193 ~~~~~~~~~l~~~l~~~l~~l~~--~g~~~~i~~k~~ 227 (227)
T 3tql_A 193 IAVKKGNQALLLKLNKALAAIKA--NGVYAAIVQKYF 227 (227)
T ss_dssp CEEETTCHHHHHHHHHHHHHHHH--TSHHHHHHHHHC
T ss_pred EEEcCCCHHHHHHHHHHHHHHHh--CChHHHHHHhhC
Confidence 99999 7899999999999999 999999999986
No 55
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.82 E-value=4.7e-21 Score=196.69 Aligned_cols=219 Identities=22% Similarity=0.313 Sum_probs=173.9
Q ss_pred ccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHH
Q psy16206 403 IENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIG 481 (821)
Q Consensus 403 ~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 481 (821)
.+.++|+|++.. ++|||.+. ++ +++ |+++|+++.+++++|++++++.+ +|.+++.
T Consensus 21 ~~~~~l~v~~~~--------~~~P~~~~-~~--g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~ 76 (249)
T 4f3p_A 21 SMAKELVVGTDT--------SFMPFEFK-QG--DKYVGFDLDLWAEIAKGAGWTYKIQPM-------------DFAGLIP 76 (249)
T ss_dssp ---CCEEEEEES--------CBTTTBEE-ET--TEEESHHHHHHHHHHHHHTCCEEEEEE-------------CGGGHHH
T ss_pred ccCceEEEEeCC--------CCCCeEEe-cC--CeEEEEhHHHHHHHHHHcCCceEEEec-------------CHHHHHH
Confidence 455778888886 79999997 33 488 99999999999999999999976 5999999
Q ss_pred HHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhh
Q psy16206 482 ELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLAR 561 (821)
Q Consensus 482 ~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~ 561 (821)
+|.+|++|++++++..+++|.+.+.||.||+....++++++++....++ +.++..+..+ ..+
T Consensus 77 ~l~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~~-~dL~g~~i~v-------~~g---------- 138 (249)
T 4f3p_A 77 ALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSI-DDLNGKVIAA-------KTG---------- 138 (249)
T ss_dssp HHHTTSCSEEEEEEECCHHHHTTEEECSCCEEEEEEEEEETTCCSCCSS-GGGTTSEEEE-------ETT----------
T ss_pred HHHCCCCCEEEeccccCHHHHcCcceecceeeccEEEEEECCCCCcCCh-HHhCCCEEEE-------eCC----------
Confidence 9999999998888999999999999999999999999999887433333 3333332211 111
Q ss_pred cCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcC--Cceeeccee
Q psy16206 562 ISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC--DLMQVGGLL 639 (821)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~--~~~~~~~~~ 639 (821)
..+...............+++.++++++|.. |++|+++.+...+.+++++.. ++.++...+
T Consensus 139 ----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~-GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~ 201 (249)
T 4f3p_A 139 ----------------TATIDWIKAHLKPKEIRQFPNIDQAYLALEA-GRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPV 201 (249)
T ss_dssp ----------------SHHHHHHHHHCCCSEEEEESSHHHHHHHHHT-TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEE
T ss_pred ----------------ChHHHHHHhcCCCceEEEcCCHHHHHHHHHc-CCeeEEEeCcHHHHHHHHhCCCCceEEecCCC
Confidence 1122222222122233467789999999999 999999999999999998764 577777778
Q ss_pred cCCCcccccCC-chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 640 DSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 640 ~~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
...+++++++| .+|++.||++|.++++ +|++++|++||++.
T Consensus 202 ~~~~~~~~~~k~~~l~~~l~~~l~~l~~--~g~~~~i~~k~~~~ 243 (249)
T 4f3p_A 202 SGDKYGIGFPKGSPLVAKVNAELARMKA--DGRYAKIYKKWFGS 243 (249)
T ss_dssp EEEEEEEEEETTCTHHHHHHHHHHHHHH--HTHHHHHHHHHHSS
T ss_pred CCccEEEEEcCCchHHHHHHHHHHHHHh--CCcHHHHHHHHcCC
Confidence 88899999999 5599999999999999 99999999999874
No 56
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.82 E-value=9.9e-21 Score=191.97 Aligned_cols=220 Identities=21% Similarity=0.317 Sum_probs=175.6
Q ss_pred ccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHH
Q psy16206 403 IENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIG 481 (821)
Q Consensus 403 ~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 481 (821)
...++|+|++.. ++|||.+.++++ ++ |+++|+++++++++|++++++.. +|.+++.
T Consensus 8 ~~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~ 64 (234)
T 3h7m_A 8 DRHRTIVVGGDR--------DYPPYEFIDQNG--KPAGYNVELTRAIAEVMGMTVEFRLG-------------AWSEMFS 64 (234)
T ss_dssp CSSSCEEEEEET--------EETTTEEECTTS--CEESHHHHHHHHHHHHHTCCEEEEEE-------------CGGGHHH
T ss_pred CCCCEEEEEecC--------CCCCeEEECCCC--CEeeeEHHHHHHHHHHcCCceEEEeC-------------CHHHHHH
Confidence 445778888876 899999987655 88 99999999999999999999965 5999999
Q ss_pred HHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhh
Q psy16206 482 ELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLAR 561 (821)
Q Consensus 482 ~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~ 561 (821)
+|.+|++|++ ++++.+++|.+.+.||.||+....+++++++.....+ .+.++..+..+ ..
T Consensus 65 ~l~~g~~D~~-~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~~~-~~dL~g~~i~~-------~~----------- 124 (234)
T 3h7m_A 65 ALKSGRVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAG-LEDLRGRKVAL-------HR----------- 124 (234)
T ss_dssp HHHTTSSSEE-EEEECCHHHHTTEEEEEEEEEEEEEEEEESSSCCCSS-GGGGTTSCEEE-------ET-----------
T ss_pred HHhCCCeeEE-EeccCCHhHHhhcCCCccccccceEEEEECCCCCCCC-HHHhCCCEEEE-------Ee-----------
Confidence 9999999996 6799999999999999999999999999988762333 33334333221 01
Q ss_pred cCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc--CCceeeccee
Q psy16206 562 ISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN--CDLMQVGGLL 639 (821)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~--~~~~~~~~~~ 639 (821)
...+.............+.+.+..+++++|.+ |++|+++.+...+.+++++. .++..+....
T Consensus 125 ---------------g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (234)
T 3h7m_A 125 ---------------DGIMHEYLAERGYGKDLVLTPTPADALRLLAA-GGCDYAVVAMVPGMYIIRENRLTNLVPVARSI 188 (234)
T ss_dssp ---------------TSHHHHHHHTTTCGGGEEEESSHHHHHHHHHT-TSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEE
T ss_pred ---------------CchHHHHHHhcCCCceEEEeCCHHHHHHHHHc-CCceEEEeccHHHHHHHHhcCCCceEEecccc
Confidence 11222222222211233467789999999999 99999999999999998875 4677777777
Q ss_pred cCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCCc
Q psy16206 640 DSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGEL 683 (821)
Q Consensus 640 ~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~ 683 (821)
...+++++++| ++|++.||++|.++++ +|++++|++||++..
T Consensus 189 ~~~~~~~~~~~~~~~l~~~l~~~l~~l~~--~g~~~~i~~k~~~~~ 232 (234)
T 3h7m_A 189 AAQRYGYAVRQGDAELLARFSEGLAILRK--TGQYEAIRAKWLGVL 232 (234)
T ss_dssp EEEEEEEEEETTCHHHHHHHHHHHHHHHH--HTHHHHHHHHSTTCC
T ss_pred CCCceEEEEeCCCHHHHHHHHHHHHHHHH--cCcHHHHHHHhcccc
Confidence 78889999999 7899999999999999 999999999999753
No 57
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.81 E-value=1.5e-20 Score=189.95 Aligned_cols=216 Identities=19% Similarity=0.265 Sum_probs=169.2
Q ss_pred cCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHH
Q psy16206 404 ENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGE 482 (821)
Q Consensus 404 ~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 482 (821)
+.++|+|++.. ++|||.+.++++ ++ |+++|+++++++++|++++++.. +|.+++.+
T Consensus 4 ~a~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~ 60 (229)
T 2y7i_A 4 SARTLHFGTSA--------TYAPYEFVDADN--KIVGFDIDVANAVCKEMQAECSFTNQ-------------SFDSLIPS 60 (229)
T ss_dssp SCCEEEEEECC--------CBTTTBEECTTS--CEESHHHHHHHHHHHHTTCEEEEEEC-------------CGGGHHHH
T ss_pred cCCcEEEEeCC--------CcCCceEECCCC--CCcceeHHHHHHHHHHhCCeEEEEEc-------------CHHHHHHH
Confidence 34677777765 799999987654 88 99999999999999999999965 59999999
Q ss_pred HHcCCcceEEeccccchhhhcceeecccceee-ceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhh
Q psy16206 483 LQEQRADLAICDLTITSERRAAVDFTMPFMTL-GISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLAR 561 (821)
Q Consensus 483 l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~-~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~ 561 (821)
|.+|++|++++++..+++|.+.+.||.||+.. ..++++++++ ..++ +.++..+..+
T Consensus 61 l~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~--~~~~-~dL~g~~v~~-------------------- 117 (229)
T 2y7i_A 61 LRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA--YHTF-ADLKGKKVGL-------------------- 117 (229)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETTS--CCST-GGGTTCEEEE--------------------
T ss_pred HhCCCceEEEecCccCHHHhcceeeccccccCCcEEEEEeCCC--CCCH-HHHCCCEEEE--------------------
Confidence 99999999987789999999999999999999 9999999886 2232 2333332211
Q ss_pred cCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeecceec-
Q psy16206 562 ISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGGLLD- 640 (821)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~~~~- 640 (821)
. ....+...............+.+..+++++|.+ |++|+++.+...+.+++++.+++.++...+.
T Consensus 118 ---------~----~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (229)
T 2y7i_A 118 ---------E----NGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKN-NRLEGVFGDVAAIGKWLKNNPDYAIMDERASD 183 (229)
T ss_dssp ---------E----TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHT-TSCSEEEEEHHHHHHHHTTCTTEEECSCCBCC
T ss_pred ---------e----cCCcHHHHHHHhCCCCeEEecCCHHHHHHHHHc-CCcCEEEechHHHHHHHHhCCCeEEecccccc
Confidence 0 011122222211111223467788999999998 9999999999999999988777777765442
Q ss_pred ----CCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCC
Q psy16206 641 ----SKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETG 681 (821)
Q Consensus 641 ----~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g 681 (821)
+.+++++++| ++|++.||++|.++++ +|++.+|++||++
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~--~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 184 PDYYGKGLGIAVRKDNDALLQEINAALDKVKA--SPEYAQMQEKWFT 228 (229)
T ss_dssp TTTSCCCBCCEECTTCHHHHHHHHHHHHHHHT--SHHHHHHHHHHHC
T ss_pred ccccccceEEEEeCCCHHHHHHHHHHHHHHHh--CChHHHHHHHHcC
Confidence 2488999999 7799999999999999 9999999999975
No 58
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.81 E-value=3e-20 Score=189.21 Aligned_cols=218 Identities=16% Similarity=0.218 Sum_probs=166.0
Q ss_pred CceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHH
Q psy16206 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGEL 483 (821)
Q Consensus 405 ~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 483 (821)
+++|+|++.. ++|||.+.++++ ++ |+++|+++++++++|++++++.. +|++++.+|
T Consensus 3 ~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l 59 (239)
T 1lst_A 3 PQTVRIGTDT--------TYAPFSSKDAKG--EFIGFDIDLGNEMCKRMQVKCTWVAS-------------DFDALIPSL 59 (239)
T ss_dssp CSEEEEEECS--------CBTTTBEECTTC--CEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHHH
T ss_pred cceEEEEECC--------CcCCeeEECCCC--CEeeEHHHHHHHHHHHHCCeEEEEeC-------------CHHHHHHHH
Confidence 4567777754 799999987654 88 99999999999999999999865 699999999
Q ss_pred HcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcC
Q psy16206 484 QEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARIS 563 (821)
Q Consensus 484 ~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~ 563 (821)
++|++|+++++++.+++|++.+.||.||+....+++++++.+...+ .+.++..+..
T Consensus 60 ~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~~~~-~~dL~g~~v~----------------------- 115 (239)
T 1lst_A 60 KAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPT-LESLKGKHVG----------------------- 115 (239)
T ss_dssp HTTSCSEECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCCCSS-HHHHTTCEEE-----------------------
T ss_pred hCCCCCEEEECcCcCHHHhhceeecccceeCceEEEEeCCCCCCCC-HHHhCCCEEE-----------------------
Confidence 9999999988789999999999999999999999999988653212 2223322211
Q ss_pred CCcceeEeecCCChHHHHHHHHh-hh-ccCCcccccCchhHHHHHHhccCceEEEecccchhh-hhhhc--CCceeecce
Q psy16206 564 SGSRLRYSAKNSNVSLYQRMHSA-ME-SSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY-EVEKN--CDLMQVGGL 638 (821)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~-~~~~~--~~~~~~~~~ 638 (821)
.. ....+...... +. .+.....+.+..+++++|.+ |++|+++.+...+.+ ++.+. .++.++...
T Consensus 116 ------~~----~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (239)
T 1lst_A 116 ------VL----QGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTA-GRLDAALQDEVAASEGFLKQPAGKEYAFAGPS 184 (239)
T ss_dssp ------EE----TTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHT-TSCSEEEEEHHHHHHHTTTSGGGTTEEECSSC
T ss_pred ------EE----cCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHc-CCCCEEEeCcHHHHHHHHhccCCCceEEeccc
Confidence 11 01112222221 21 12223467789999999998 999999999988764 44433 356666654
Q ss_pred ecC-----CCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 639 LDS-----KGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 639 ~~~-----~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
+.. .+++++++| ++|++.+|++|.++++ +|++++|++||++.
T Consensus 185 ~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~--~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 185 VKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQ--DGTYDKMAKKYFDF 233 (239)
T ss_dssp BCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHHH--TTHHHHHHHTTCSS
T ss_pred cccccccCcceEEEEeCCCHHHHHHHHHHHHHHHH--CccHHHHHHHHcCC
Confidence 433 378999999 6799999999999999 99999999999874
No 59
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.81 E-value=1.4e-20 Score=190.77 Aligned_cols=216 Identities=16% Similarity=0.204 Sum_probs=168.1
Q ss_pred CceEEEEeeccceeeeeecCCCceee--cCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHH
Q psy16206 405 NRTLTVTSKTFAKLRVLFQGEPYMMK--NPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIG 481 (821)
Q Consensus 405 ~~~l~v~~~~g~~lrVgv~~~P~~~~--~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 481 (821)
+++|+|++. .+|||.+. ++++ ++ |+++|+++.+++++|++++++.++ +|.+++.
T Consensus 3 ~~~l~v~~~---------~~~P~~~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~~------------~~~~~~~ 59 (233)
T 1ii5_A 3 AMALKVGVV---------GNPPFVFYGEGKNA--AFTGISLDVWRAVAESQKWNSEYVRQN------------SISAGIT 59 (233)
T ss_dssp SCCEEEEEC---------CCTTTCEEC-------CEESHHHHHHHHHHHHHTCCEEEEECS------------CHHHHHH
T ss_pred CceEEEEec---------CCCCeEEEecCCCC--CEEEEeHHHHHHHHHHcCCcEEEEEeC------------CHHHHHH
Confidence 356666666 89999997 5444 88 999999999999999999999763 6999999
Q ss_pred HHHcCCcceEEeccccchhhh--cceeecccceeeceEEEEEcCCC-CCCCcccccccCchhHHHHHHHHHHHHHHHHHh
Q psy16206 482 ELQEQRADLAICDLTITSERR--AAVDFTMPFMTLGISILYRKPAK-KQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFF 558 (821)
Q Consensus 482 ~l~~g~~Di~~~~~~~t~~R~--~~~~fS~p~~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~ 558 (821)
+|.+|++|+++++++.+++|. +.+.||.||+....+++++++++ ...+ .+.++..+..+
T Consensus 60 ~l~~g~~D~~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~~i~~-~~dL~g~~v~~----------------- 121 (233)
T 1ii5_A 60 AVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRS-VGDLKNKEVAV----------------- 121 (233)
T ss_dssp HHHTTSCSEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTTTCSS-GGGGTTCEEEE-----------------
T ss_pred HHHCCCcCEEEeeeecCccccccceeEEccceeecCeEEEEECCCCCCCCC-HHHhCCCeEEE-----------------
Confidence 999999999988888999999 99999999999999999998863 1222 23333332211
Q ss_pred hhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcC--Cceeec
Q psy16206 559 LARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC--DLMQVG 636 (821)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~--~~~~~~ 636 (821)
. ....+....... +.....+.+..+++++|.. |++|+++.+...+.+++++.. .+.+++
T Consensus 122 ------------~----~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~-g~vDa~~~~~~~~~~~~~~~~~~~~~~~~ 182 (233)
T 1ii5_A 122 ------------V----RDTTAVDWANFY--QADVRETNNLTAAITLLQK-KQVEAVMFDRPALIYYTRQNPNLNLEVTE 182 (233)
T ss_dssp ------------E----TTSHHHHHHHHT--TCEEEEESSHHHHHHHHHT-TSCSEEEEEHHHHHHHHHHCGGGCEEECS
T ss_pred ------------E----CCccHHHHHHHc--CCCeEEcCCHHHHHHHHHc-CCccEEEeCHHHHHHHHHhCCCCcEEEeC
Confidence 0 111122222222 2233467788999999998 999999999999999988764 677777
Q ss_pred ceecCCCcccccCC-chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 637 GLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 637 ~~~~~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
......+++++++| .+|.+.+|++|.++++ +|++.+|++||++.
T Consensus 183 ~~~~~~~~~~~~~k~~~l~~~~~~~l~~l~~--~g~~~~i~~k~~~~ 227 (233)
T 1ii5_A 183 IRVSLEPYGFVLKENSPLQKTINVEMLNLLY--SRVIAEFTERWLGP 227 (233)
T ss_dssp CCSEEEEEEEEEETTCTTHHHHHHHHHHHHH--TTHHHHHHHHHHC-
T ss_pred ccccccceEEEEcCCchHHHHHHHHHHHHHh--CCcHHHHHHHHcCC
Confidence 66667789999999 6699999999999999 99999999999863
No 60
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.81 E-value=1.3e-20 Score=196.11 Aligned_cols=224 Identities=11% Similarity=0.144 Sum_probs=174.5
Q ss_pred hhhhhhccCceEEEEeeccceeeeeecCCCceeecCC-CCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCC
Q psy16206 397 KEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPE-TGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTG 474 (821)
Q Consensus 397 ~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~-~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~ 474 (821)
..+..+.++++|+|++.. ++|||.+.+++ +.+++ |+++|+++++++++|++++++.+
T Consensus 12 ~~~~~i~~~~~l~v~~~~--------~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~------------- 70 (271)
T 2iee_A 12 TGWEQIKDKGKIVVATSG--------TLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEM------------- 70 (271)
T ss_dssp CCHHHHHHHTEEEEEECS--------CBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCEEEEEEC-------------
T ss_pred chHHhhccCCeEEEEECC--------CCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCeEEEEEC-------------
Confidence 457778888999999987 89999997654 11388 99999999999999999999965
Q ss_pred cchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCC-CCCCcccccccCchhHHHHHHHHHHHHH
Q psy16206 475 KWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAK-KQPDLFSFLEPLSFDVWVYMATAYLGVS 553 (821)
Q Consensus 475 ~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~vw~~~~~~~~~~~ 553 (821)
+|.+++.+|++|++|+++++++.|++|.+.+.||.||+....++++++++. ...+ .+.++..+..+
T Consensus 71 ~~~~~~~~l~~G~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~~i~~-~~dL~g~~i~v------------ 137 (271)
T 2iee_A 71 GIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKT-LKDLKGKKAAG------------ 137 (271)
T ss_dssp CSTTHHHHHHHTSSSEECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGGGCSS-GGGGTTCEEES------------
T ss_pred CHHHHHHHHHCCCcCEEEeCCcCChhhccceEEeecceeCCeEEEEECCCCCCCCC-HHHhCCCEEEE------------
Confidence 599999999999999998788899999999999999999999999998863 1222 23334333221
Q ss_pred HHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhH--HHHHHhccCceEEEecccchhhhhh-hc-
Q psy16206 554 LLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEG--VERVVKEKGKYAFFMESTGIEYEVE-KN- 629 (821)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~g~~da~i~~~~~~~~~~~-~~- 629 (821)
.....+....+... .....+.+..++ +++|.. |++| ++.+...+.+++. +.
T Consensus 138 ---------------------~~g~~~~~~l~~~~--~~~~~~~~~~~~~l~~~L~~-GrvD-~i~~~~~~~~~~~~~~~ 192 (271)
T 2iee_A 138 ---------------------AATTVYMEVARKYG--AKEVIYDNATNEQYLKDVAN-GRTD-VILNDYYLQTLALAAFP 192 (271)
T ss_dssp ---------------------CTTSHHHHHHHHTT--CEEEECSSCCHHHHHHHHHH-TSSC-EEEEEHHHHHHHHHHCT
T ss_pred ---------------------eCCccHHHHHHHcC--CceEEeCChhhHHHHHHHHc-CCcc-EEeccHHHHHHHHHhCC
Confidence 11112222222221 133466788888 999999 9999 7787777766665 43
Q ss_pred -CCceee-cceecCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCC
Q psy16206 630 -CDLMQV-GGLLDSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETG 681 (821)
Q Consensus 630 -~~~~~~-~~~~~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g 681 (821)
.++.++ ...+...+++++++| ++|++.||++|.++++ +|++.+|++||++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~al~~l~~--~G~~~~i~~k~~~ 246 (271)
T 2iee_A 193 DLNITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSK--DGSLTKLSKQFFN 246 (271)
T ss_dssp TSSCEECSSCCEEEEEECCEEETTCHHHHHHHHHHHHHHHH--HTHHHHHHHHHTT
T ss_pred CCceEEecCCCcccceEEEEEcCCCHHHHHHHHHHHHHHHH--CCCHHHHHHHhCC
Confidence 356666 566677889999999 7899999999999999 9999999999987
No 61
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.80 E-value=2.3e-20 Score=190.88 Aligned_cols=218 Identities=13% Similarity=0.211 Sum_probs=169.2
Q ss_pred cCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcC-CeEEEEEecCCcccccCCCCCcchHHHH
Q psy16206 404 ENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELN-FTYKFVLERENTYGTLNPQTGKWNGLIG 481 (821)
Q Consensus 404 ~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 481 (821)
+.++|+|++.. ++|||.+. ++ +++ |+++|+++++++++| ++++++.+ +|.+++.
T Consensus 6 ~~~~l~v~~~~--------~~~P~~~~-~~--g~~~G~~~dl~~~i~~~~g~~~~~~~~~-------------~~~~~~~ 61 (246)
T 4eq9_A 6 SKKEIIVATNG--------SPRPFIYE-EN--GELTGYEIEVVRAIFKDSDKYDVKFEKT-------------EWSGVFA 61 (246)
T ss_dssp -CEEEEEEECC--------CSTTTSEE-ET--TEEESHHHHHHHHHHTTCSSEEEEEEEC-------------CHHHHHH
T ss_pred CCCEEEEEeCC--------CcCCeEEc-CC--CCCcccHHHHHHHHHHHcCCceEEEEeC-------------CHHHHHH
Confidence 35678888876 89999994 43 488 999999999999999 99999965 5999999
Q ss_pred HHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhh
Q psy16206 482 ELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLAR 561 (821)
Q Consensus 482 ~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~ 561 (821)
+|.+|++|+++++++.+++|.+.+.||.||+....++++++++....+ ...++..+..+ .
T Consensus 62 ~l~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~-~~dL~g~~i~~-------~------------ 121 (246)
T 4eq9_A 62 GLDADRYNMAVNNLSYTKERAEKYLYAAPIAQNPNVLVVKKDDSSIKS-LDDIGGKSTEV-------V------------ 121 (246)
T ss_dssp HHHTTSCSEECSSCCCCHHHHHHEEECCCCEECCEEEEEETTCCSCSS-GGGCTTCEEEE-------C------------
T ss_pred HHhCCCcCEEecccccChhhhhceeeccceecCceEEEEECCCCCCCC-HHHhCCCEEEE-------e------------
Confidence 999999999988899999999999999999999999999984332333 23333332211 0
Q ss_pred cCCCcceeEeecCCChHHHHHHHHh----hhccCCccc-c-cCchhHHHHHHhccCceEEEecccchhhhhhhcC--Cce
Q psy16206 562 ISSGSRLRYSAKNSNVSLYQRMHSA----MESSRPSVF-V-KSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC--DLM 633 (821)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~-~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~--~~~ 633 (821)
....+...... .......+. . .+.++++++|.+ |++|+++.+...+.+++++.. ++.
T Consensus 122 --------------~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-g~vDa~~~~~~~~~~~~~~~~~~~~~ 186 (246)
T 4eq9_A 122 --------------QATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSD-GQFDYKIFDKIGVETVIKNQGLDNLK 186 (246)
T ss_dssp --------------TTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHT-TSSSEEEEEHHHHHHHHHHHTCTTEE
T ss_pred --------------cCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHc-CCceEEEecHHHHHHHHHhCCCCCce
Confidence 11112222222 111111222 2 378999999999 999999999999999998764 677
Q ss_pred eecceecCCC-cccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 634 QVGGLLDSKG-YGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 634 ~~~~~~~~~~-~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
++.......+ ++++++| ++|++.||++|.++++ +|++++|++||++.
T Consensus 187 ~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~--~g~~~~i~~k~~~~ 236 (246)
T 4eq9_A 187 VIELPSDQQPYVYPLLAQGQDELKSFVDKRIKELYK--DGTLEKLSKQFFGD 236 (246)
T ss_dssp EEECCCSSCCEECCEEETTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHSS
T ss_pred EecCcCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHh--CCcHHHHHHHhcCC
Confidence 7776666665 8999999 7899999999999999 99999999999984
No 62
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.79 E-value=4.7e-20 Score=185.80 Aligned_cols=216 Identities=24% Similarity=0.346 Sum_probs=168.9
Q ss_pred ceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHH
Q psy16206 406 RTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQ 484 (821)
Q Consensus 406 ~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 484 (821)
++|+|++.+ ++|||.+.++ + ++ |+++|+++.+++++|++++++.. +|.+++.+|.
T Consensus 3 ~~l~v~~~~--------~~~P~~~~~~-g--~~~G~~~dl~~~~~~~~g~~~~~~~~-------------~~~~~~~~l~ 58 (226)
T 1wdn_A 3 KKLVVATDT--------AFVPFEFKQG-D--LYVGFDVDLWAAIAKELKLDYELKPM-------------DFSGIIPALQ 58 (226)
T ss_dssp -CEEEEEES--------SBTTTBEEET-T--EEESHHHHHHHHHHHHHTCCEEEEEE-------------CGGGHHHHHH
T ss_pred ceEEEEECC--------CCCCeeEecC-C--cEEEeeHHHHHHHHHHhCCEEEEEEC-------------CHHHHHHHHh
Confidence 456666665 7999999764 3 88 99999999999999999999965 5999999999
Q ss_pred cCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCC
Q psy16206 485 EQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISS 564 (821)
Q Consensus 485 ~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~ 564 (821)
+|++|++++++..+++|.+.+.|+.||+....+++++++++...++ +.++..+..+
T Consensus 59 ~g~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~i~~~-~dL~g~~i~~----------------------- 114 (226)
T 1wdn_A 59 TKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSV-KDLDGKVVAV----------------------- 114 (226)
T ss_dssp TTSSSEEEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCCSCSSS-TTTTTCEEEE-----------------------
T ss_pred CCCCCEEEEcCcCCHHHhCccccccchhcCceEEEEeCCCCCCCCH-HHhCCCEEEE-----------------------
Confidence 9999999888888999999999999999999999999886422222 2233322111
Q ss_pred CcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcC--CceeecceecCC
Q psy16206 565 GSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC--DLMQVGGLLDSK 642 (821)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~--~~~~~~~~~~~~ 642 (821)
. ....+...............+.+..+++.+|.+ |++|+++.+...+.+++++.. .+.+++......
T Consensus 115 ------~----~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (226)
T 1wdn_A 115 ------K----SGTGSVDYAKANIKTKDLRQFPNIDNAYMELGT-NRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQ 183 (226)
T ss_dssp ------E----TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHT-TSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEE
T ss_pred ------E----cCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHc-CCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccC
Confidence 0 011122222222112223467788999999998 999999999999999888763 677776666777
Q ss_pred CcccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 643 GYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 643 ~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
+++++++| ++|.+.+|++|.++++ +|++++|++||++.
T Consensus 184 ~~~~~~~k~~~~l~~~~~~~l~~l~~--~g~~~~i~~k~~~~ 223 (226)
T 1wdn_A 184 QYGIAFPKGSDELRDKVNGALKTLRE--NGTYNEIYKKWFGT 223 (226)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHH--TSHHHHHHHHHHSS
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHh--CChHHHHHHHHcCC
Confidence 89999999 6899999999999999 99999999999864
No 63
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.79 E-value=7.4e-20 Score=188.65 Aligned_cols=224 Identities=15% Similarity=0.168 Sum_probs=172.0
Q ss_pred hhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCe-EEEEEecCCcccccCCCCC
Q psy16206 397 KEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFT-YKFVLERENTYGTLNPQTG 474 (821)
Q Consensus 397 ~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~-~~~~~~~~~~~g~~~~~~~ 474 (821)
+++..+.++++|+|++. ++|||.+.++++ ++ |+++|+++++++++|++ ++++.+
T Consensus 4 ~~l~~i~~~~~l~v~~~---------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~~------------- 59 (257)
T 2q88_A 4 NKLEELKEQGFARIAIA---------NEPPFTAVGADG--KVSGAAPDVAREIFKRLGVADVVASIS------------- 59 (257)
T ss_dssp THHHHHHHHTEEEEEEC---------CCTTTCEECTTC--CEESHHHHHHHHHHHHTTCCEEEEEEC-------------
T ss_pred ccHHHhhcCCeEEEEcC---------CCCCeeEECCCC--CcccccHHHHHHHHHHcCCCeeeEEeC-------------
Confidence 46788888899999998 899999977654 88 99999999999999998 999865
Q ss_pred cchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccc---cCchhHHHHHHHHHHH
Q psy16206 475 KWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLE---PLSFDVWVYMATAYLG 551 (821)
Q Consensus 475 ~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~---~~~~~vw~~~~~~~~~ 551 (821)
+|++++.+|++|++|++++++..+++|.+.+.||.||+....+++++++++......+.++ ..+..+ .
T Consensus 60 ~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~~~~g~~i~~-------~-- 130 (257)
T 2q88_A 60 EYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGA-------P-- 130 (257)
T ss_dssp CGGGHHHHHHTTSCSEECSCCBCCHHHHTTSEECSCCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEE-------C--
T ss_pred CHHHHHHHHHCCCcCEEEecccCCHHHHhccccccchhcCceEEEEECCCccCCCCHHHHhccCCceEEE-------E--
Confidence 5999999999999999987899999999999999999999999999988642122222222 222111 0
Q ss_pred HHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhc-cCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcC
Q psy16206 552 VSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMES-SRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC 630 (821)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~ 630 (821)
....+......... ......+.+.++++.+|.. |++|+++.+...+.+++++.+
T Consensus 131 ------------------------~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-grvDa~i~~~~~~~~~~~~~~ 185 (257)
T 2q88_A 131 ------------------------GGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQD-GRIDVYSLPVLSINDLVSKAN 185 (257)
T ss_dssp ------------------------TTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHH-TSCSEEEEEHHHHHHHHHHHC
T ss_pred ------------------------CCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHc-CCCcEEEcCHHHHHHHHHhCC
Confidence 11112222222111 1123467789999999999 999999999999999988764
Q ss_pred --Cceeecceec--CCCcccccCC--chhhcccccceeEEEEeecCCccccccCCC
Q psy16206 631 --DLMQVGGLLD--SKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPET 680 (821)
Q Consensus 631 --~~~~~~~~~~--~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~ 680 (821)
.+........ ..+++++++| ++|++.||++|.++++ +|++.+|++||.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~~~~--~g~~~~i~~k~~ 239 (257)
T 2q88_A 186 DPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKE--SGEFAKIIEPYG 239 (257)
T ss_dssp CTTEEEECSCBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHH--HTHHHHHHGGGT
T ss_pred CcceeeecccCCccccceEEEEcCCCHHHHHHHHHHHHHHHh--CCcHHHHHHHhC
Confidence 3444332211 3467889999 7899999999999999 999999999993
No 64
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.79 E-value=1.1e-19 Score=187.75 Aligned_cols=219 Identities=16% Similarity=0.234 Sum_probs=169.2
Q ss_pred cCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHH
Q psy16206 404 ENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGE 482 (821)
Q Consensus 404 ~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 482 (821)
+.++|+|++.+ ++|||.+.+.+| ++ |+++|+++.+++++|++++++.. +|++++.+
T Consensus 27 ~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~ 83 (259)
T 4dz1_A 27 EGRTLNVAVSP--------ASPPMLFKSADG--KLQGIDLELFSSYCQSRHCKLNITEY-------------AWDGMLGA 83 (259)
T ss_dssp TTCEEEEEECC--------CBTTTBEECTTC--CEESHHHHHHHHHHHHHTCEEEEEEC-------------CHHHHHHH
T ss_pred cCCeEEEEECC--------CCCCeEEECCCC--CEEEeHHHHHHHHHHHhCCeEEEEEc-------------CHHHHHHH
Confidence 45788888886 799999987655 88 99999999999999999999865 69999999
Q ss_pred HHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhc
Q psy16206 483 LQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARI 562 (821)
Q Consensus 483 l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~ 562 (821)
|.+|++|+++++++.+++|.+.++||.||+..+.++++++++.......+.++..+..+
T Consensus 84 l~~g~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~i~~~~dL~g~~v~v--------------------- 142 (259)
T 4dz1_A 84 VASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKITLNNLNELNKYSIGY--------------------- 142 (259)
T ss_dssp HHHTSSSEEEEEEECCHHHHTTEEECCCSEEEEEEEEEETTSCCCCCSGGGGGGSCEEE---------------------
T ss_pred HhCCCCCEEEECCcCCHHHhhccccccchhhCceEEEEEcCCCCCCCCHHHhCCCEEEE---------------------
Confidence 99999999888899999999999999999999999999987542222233333322211
Q ss_pred CCCcceeEeecCCChHHHHHHHH-hhhcc-----CCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc-CCceee
Q psy16206 563 SSGSRLRYSAKNSNVSLYQRMHS-AMESS-----RPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN-CDLMQV 635 (821)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~-~~~~~~ 635 (821)
. .... +..... .+... .....+.+.+++++++.+ |++|+++.+...+.+++++. .++...
T Consensus 143 --------~-~g~~---~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~-G~vDa~~~~~~~~~~~~~~~~~~~~~~ 209 (259)
T 4dz1_A 143 --------P-RGMA---YSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKN-GNLDLAFIEEPVYFTFKNKKKMPIESR 209 (259)
T ss_dssp --------E-TTST---HHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHH-TSCSEEEEEHHHHHHHHHTSCCCEEEE
T ss_pred --------e-CCcH---HHHHHHHhcccccccccceeEecCCHHHHHHHHHc-CCCCEEEecHHHHHHHhccCCCceEee
Confidence 1 1111 112222 12211 223467789999999999 99999999999988887664 466666
Q ss_pred cceecCCCcccccCC-chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 636 GGLLDSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 636 ~~~~~~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
.......+++++++| .+|++.||++|.+ .. ++.++++.++|.+.
T Consensus 210 ~~~~~~~~~~~~~~k~~~l~~~ln~~l~~-~g--~~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 210 YVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QG--PQKISGIVDSWMKH 254 (259)
T ss_dssp EEEEEEEEEEEEEETTCHHHHHHHHHHHH-HC--HHHHHHHHHHHTCC
T ss_pred cccCCCceEEEEEeCChHHHHHHHHHHHh-CC--CeehHHHHHHHHhh
Confidence 666667899999999 8899999999999 66 78888888888764
No 65
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.77 E-value=1e-19 Score=183.64 Aligned_cols=214 Identities=19% Similarity=0.305 Sum_probs=164.3
Q ss_pred ceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHH
Q psy16206 406 RTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQ 484 (821)
Q Consensus 406 ~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 484 (821)
++|+|++. ++|||.+. +++ ++ |+++|+++.+++++|++++++..+ +|.+++.+|.
T Consensus 3 ~~l~v~~~---------~~~P~~~~-~~g--~~~G~~~dl~~~~~~~~g~~~~~~~~~------------~~~~~~~~l~ 58 (228)
T 2pyy_A 3 QPLLVATR---------VIPPFVLS-NKG--ELSGFSIDLWRSIATQIGIESKLIEYS------------SVPELISAIK 58 (228)
T ss_dssp -CEEEEEC---------CBTTTBBC-C-----CBSHHHHHHHHHHHHHTCCEEEEECS------------SHHHHHHHHH
T ss_pred ceEEEEec---------CCCCeEEe-cCC--ceEEEeHHHHHHHHHHhCCcEEEEEcC------------CHHHHHHHHH
Confidence 45666666 89999997 443 78 999999999999999999999875 6899999999
Q ss_pred cCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCC---CCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhh
Q psy16206 485 EQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAK---KQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLAR 561 (821)
Q Consensus 485 ~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~---~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~ 561 (821)
+|++|++++++..+++|.+.+.|+.||+....+++++++++ ...+ .+.++..+..+
T Consensus 59 ~g~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~dL~g~~i~~-------------------- 117 (228)
T 2pyy_A 59 DNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESGTGDIRS-IDDLPGKVVAT-------------------- 117 (228)
T ss_dssp TTSCSEECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC-----CCCCS-GGGCTTCEEEE--------------------
T ss_pred CCCcCEEEeccccCHHHHccceecccchhcceEEEEECCccccCCcCC-HHHcCCCeEEE--------------------
Confidence 99999998888899999999999999999999999998753 1222 22233322111
Q ss_pred cCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcC--Cceeeccee
Q psy16206 562 ISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC--DLMQVGGLL 639 (821)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~--~~~~~~~~~ 639 (821)
.. ...+...... .+.....+.+..++++++.+ |++|+++.+...+.+++++.. .+.+++..+
T Consensus 118 ---------~~----g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~-g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2pyy_A 118 ---------TA----GSTAATYLRE--HHISVLEVPKIEEAYKALQT-KKADAVVFDAPVLLFYAANEGKGKVEIVGSIL 181 (228)
T ss_dssp ---------ET----TSHHHHHHHH--TTCEEEEESSHHHHHHHHHT-TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEE
T ss_pred ---------Ec----CcHHHHHHHH--cCCceEecCCHHHHHHHHHc-CCCCEEEecHHHHHHHHHhCCCCcEEEecccc
Confidence 10 0112222222 11223466788999999998 999999999999999887764 677776667
Q ss_pred cCCCcccccCC-chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 640 DSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 640 ~~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
...+++++++| ++|.+.+|++|.++++ +|++++|++||++.
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~l~~l~~--~g~~~~i~~k~~~~ 223 (228)
T 2pyy_A 182 REESYGIILPNNSPYRKPINQALLNLKE--NGTYQSLYDKWFDP 223 (228)
T ss_dssp EEEEECCEECTTCTTHHHHHHHHHHHHH--TTHHHHHHHHHHCC
T ss_pred cceeEEEEEeCChHHHHHHHHHHHHHHh--CCcHHHHHHHHcCC
Confidence 77789999999 8999999999999999 99999999999864
No 66
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.77 E-value=1.8e-19 Score=189.69 Aligned_cols=227 Identities=17% Similarity=0.159 Sum_probs=178.8
Q ss_pred hhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHc---CCeEEEEEecCCcccccCCCC
Q psy16206 398 EKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANEL---NFTYKFVLERENTYGTLNPQT 473 (821)
Q Consensus 398 ~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l---~~~~~~~~~~~~~~g~~~~~~ 473 (821)
.+..+.++++|+|++.. ++|||.+.++++ .+ |+++|+++.+++++ |++++++..
T Consensus 36 ~~~~~~~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~~~~g~~~~~~~~------------ 93 (292)
T 1xt8_A 36 SLDKIKQNGVVRIGVFG--------DKPPFGYVDEKG--NNQGYDIALAKRIAKELFGDENKVQFVLV------------ 93 (292)
T ss_dssp HHHHHHHHSSEEEEECS--------EETTTEEECTTS--CEESHHHHHHHHHHHHHHSCTTCEEEEEC------------
T ss_pred hHHHHhhCCeEEEEECC--------CCCCeeEECCCC--CEeeEhHHHHHHHHHHhccCCceEEEEEc------------
Confidence 34455667889999976 899999977554 88 99999999999999 999999965
Q ss_pred CcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHH
Q psy16206 474 GKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVS 553 (821)
Q Consensus 474 ~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~ 553 (821)
+|.+++.+|.+|++|++++++..+++|.+.+.||.||+....++++++++. ..++ +.++..+..+
T Consensus 94 -~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~-i~~~-~dL~g~~i~~------------ 158 (292)
T 1xt8_A 94 -EAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSN-ITSV-EDLKDKTLLL------------ 158 (292)
T ss_dssp -CGGGHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTCC-CCSS-GGGTTSEEEE------------
T ss_pred -CHHHHHHHHhCCCeeEEeecCCCCcchhcceeeeccceecceEEEEECCCC-CCCH-HHhCCCEEEE------------
Confidence 489999999999999997778899999999999999999999999998763 2232 3333332211
Q ss_pred HHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCce
Q psy16206 554 LLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLM 633 (821)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~ 633 (821)
. ....+.............+.+.+..++++++.+ |++|+++.+...+.+++++.+++.
T Consensus 159 -----------------~----~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~-G~vDa~~~~~~~~~~~~~~~~~l~ 216 (292)
T 1xt8_A 159 -----------------N----KGTTADAYFTQNYPNIKTLKYDQNTETFAALMD-KRGDALSHDNTLLFAWVKDHPDFK 216 (292)
T ss_dssp -----------------E----TTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHT-TSSSEEEEEHHHHHHHHHHCTTEE
T ss_pred -----------------e----CCCcHHHHHHHhCCCceEEEcCCHHHHHHHHHc-CCccEEEecHHHHHHHHHhCCCeE
Confidence 0 011122222222111223456788999999998 999999999999999998877777
Q ss_pred eecceecCCCc-ccccCC--chhhcccccceeEEEEeecCCccccccCCCCCccc
Q psy16206 634 QVGGLLDSKGY-GIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGELYG 685 (821)
Q Consensus 634 ~~~~~~~~~~~-~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~~g 685 (821)
++...+...++ +++++| ++|++.+|++|.++++ +|++++|++||++...|
T Consensus 217 ~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~--~g~~~~i~~k~~~~~~~ 269 (292)
T 1xt8_A 217 MGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQ--EQFFHKAYDETLKAHFG 269 (292)
T ss_dssp EEEEEEEEEEEECCEEETTCHHHHHHHHHHHHHHHT--TTHHHHHHHHHTGGGSC
T ss_pred EcccccccCceeEEEEeCCCHHHHHHHHHHHHHHHh--CcHHHHHHHHhcCCccc
Confidence 77766777777 999999 7799999999999999 99999999999986544
No 67
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.76 E-value=1.5e-19 Score=187.44 Aligned_cols=223 Identities=19% Similarity=0.225 Sum_probs=174.4
Q ss_pred hhhccCceEEEEeeccceeeeeecCCCcee---ecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCc
Q psy16206 400 KEKIENRTLTVTSKTFAKLRVLFQGEPYMM---KNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGK 475 (821)
Q Consensus 400 ~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~---~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~ 475 (821)
..+.++++|+|++.. ++|||.+ .+.++ ++ |+++|+++.+++++|++++++.. +
T Consensus 33 ~~~~~~~~l~v~~~~--------~~~P~~~~~~~~~~g--~~~G~~~dl~~~~~~~~g~~~~~~~~-------------~ 89 (269)
T 4i62_A 33 EAIKSKGKLVVALNP--------DFAPFEYQKVVDGKN--QIVGSDIELAKAIATELGVELELSPM-------------S 89 (269)
T ss_dssp HHHHHHTEEEEEECS--------CBTTTBEEEEETTEE--EEESHHHHHHHHHHHHHTCEEEEEEC-------------C
T ss_pred HHHhcCCeEEEEecC--------CCCCceeecccCCCC--cEeeecHHHHHHHHHHHCCceEEEEc-------------C
Confidence 344556789999986 8999999 55544 88 99999999999999999999865 6
Q ss_pred chHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHH
Q psy16206 476 WNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLL 555 (821)
Q Consensus 476 ~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~ 555 (821)
|.+++.++.+|++|++++++..+++|.+.+.||.||+....++++++++.......+.++..+..+
T Consensus 90 ~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~g~~i~~-------------- 155 (269)
T 4i62_A 90 FDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLATYQSVNDLAQKKVGA-------------- 155 (269)
T ss_dssp HHHHHHHHHTTSCSEECSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTTTCSSGGGGC-CEEEE--------------
T ss_pred HHHHHHHHhCCCccEEecCCcCCHhHhhceecccchhhcceEEEEECCccccccCHHHhCCCeEEE--------------
Confidence 999999999999999988899999999999999999999999999988432222233334332221
Q ss_pred HHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceee
Q psy16206 556 LFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQV 635 (821)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~ 635 (821)
. ....+...............+++.+++++++.+ |++|+++.+...+.+++++++++...
T Consensus 156 ---------------~----~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-g~vDa~~~~~~~~~~~~~~~~~~~~~ 215 (269)
T 4i62_A 156 ---------------Q----KGSIQETMAKDLLQNSSLVSLPKNGNLITDLKS-GQVDAVIFEEPVAKGFVENNPDLAIA 215 (269)
T ss_dssp ---------------E----TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHT-TSSSEEEEEHHHHHHHHHHCTTEEEC
T ss_pred ---------------e----cCchHHHHHHHhCCCCcEEecCCHHHHHHHHHc-CCCCEEEeChHHHHHHHHhCCCCeEE
Confidence 0 111222222222222333467789999999999 99999999999999999888776665
Q ss_pred cceec---CCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCC
Q psy16206 636 GGLLD---SKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETG 681 (821)
Q Consensus 636 ~~~~~---~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g 681 (821)
...+. ..+++++++| ++|++.+|++|.++++ +|++++|++||++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~--~g~~~~i~~k~~~ 264 (269)
T 4i62_A 216 DLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKE--SGELDKLIEDAFK 264 (269)
T ss_dssp SCCCCC-CCCEECCEEESSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHH
T ss_pred eeccCCCcccceEEEEeCCCHHHHHHHHHHHHHHHh--CChHHHHHHHHhC
Confidence 54433 6788999999 7899999999999999 9999999999986
No 68
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.76 E-value=5e-19 Score=185.34 Aligned_cols=223 Identities=18% Similarity=0.257 Sum_probs=177.3
Q ss_pred hhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCc
Q psy16206 397 KEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGK 475 (821)
Q Consensus 397 ~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~ 475 (821)
..+..+.+.++|+|++.. ++|||.+.+.++ .+ |+.+|+++.+++++|++++++.+ +
T Consensus 48 ~~~~~~~~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~G~~v~~~~~-------------~ 104 (283)
T 2yln_A 48 SLIERINNKGTVTVGTEG--------TYAPFTYHDKDG--KLTGYDVEVTRAVAEKLGVKVEFKET-------------Q 104 (283)
T ss_dssp CHHHHHHHTCEEEEEECS--------EETTTEEECTTS--CEESHHHHHHHHHHHHHTCEEEEEEC-------------C
T ss_pred ccHhHhccCCeEEEEECC--------CCCCeeEECCCC--CEeeehHHHHHHHHHHcCCceEEEEC-------------C
Confidence 345666777899999986 699999987554 88 99999999999999999999965 4
Q ss_pred chHHHHHHHcCCcceEEecccc-chhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHH
Q psy16206 476 WNGLIGELQEQRADLAICDLTI-TSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSL 554 (821)
Q Consensus 476 ~~~~~~~l~~g~~Di~~~~~~~-t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~ 554 (821)
|.+++.+|.+|++|++++.+.. +++|.+.+.|+.||+....+++++++++ ..++ +.++..+..+
T Consensus 105 ~~~~~~~l~~G~~D~~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~~-i~s~-~dL~G~~v~v------------- 169 (283)
T 2yln_A 105 WDSMMAGLKAGRFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSN-IKSI-ADIKGVKTAQ------------- 169 (283)
T ss_dssp GGGHHHHHHHTSCSEECSSCCCCSHHHHHHEEECSCSEEECEEEEEETTCS-CCSG-GGCTTSEEEE-------------
T ss_pred HHHHHHHHHCCCcCEEEecCccCChhhhcceEeccCeeeecEEEEEECCCC-CCCH-HHhCCCEEEE-------------
Confidence 9999999999999999877888 9999999999999999999999998765 2332 2233332211
Q ss_pred HHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcC--Cc
Q psy16206 555 LLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC--DL 632 (821)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~--~~ 632 (821)
.....+....... +.....+.+..+++.++.. |++|+++.+...+.+++++.+ ++
T Consensus 170 --------------------~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~-g~vDa~i~~~~~~~~~~~~~~~~~l 226 (283)
T 2yln_A 170 --------------------SLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQ-KRADATLNDELAVLDYLKKNPNAGV 226 (283)
T ss_dssp --------------------CTTSHHHHHHHHT--TCEEEECSSHHHHHHHHHT-TSCCEEEEEHHHHHHHHHHSTTSSE
T ss_pred --------------------ecCchHHHHHHHc--CCeEEEeCCHHHHHHHHHc-CCCCEEEecHHHHHHHHHhCCCCcE
Confidence 0111222222222 1223356688899999998 999999999999999887764 47
Q ss_pred eeec-ceec-CCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 633 MQVG-GLLD-SKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 633 ~~~~-~~~~-~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
.++. ..+. ..+++++++| ++|++.||++|.++++ +|++++|++||++.
T Consensus 227 ~~~~~~~~~~~~~~~i~~~k~~~~l~~~i~~al~~l~~--~g~~~~i~~k~~~~ 278 (283)
T 2yln_A 227 KIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKA--DGTLKKLGEQFFGK 278 (283)
T ss_dssp EEEEECCGGGCEEECCEEESSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHSS
T ss_pred EEccCcccCCcccEEEEEeCCCHHHHHHHHHHHHHHHH--CCcHHHHHHHHcCC
Confidence 7777 6666 7789999999 7899999999999999 99999999999874
No 69
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.76 E-value=3.2e-19 Score=187.21 Aligned_cols=225 Identities=18% Similarity=0.213 Sum_probs=176.9
Q ss_pred hhhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHH----cC---CeEEEEEecCCcccc
Q psy16206 397 KEKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANE----LN---FTYKFVLERENTYGT 468 (821)
Q Consensus 397 ~~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~----l~---~~~~~~~~~~~~~g~ 468 (821)
+.+..+.++++|+|++.. ++|||.+.+++| ++ |+++|+++.++++ +| ++++++..
T Consensus 8 ~~~~~i~~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~------- 70 (287)
T 2vha_A 8 STLDKIAKNGVIVVGHRE--------SSVPFSYYDNQQ--KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI------- 70 (287)
T ss_dssp SHHHHHHHHTEEEEEECS--------EETTTEEECSSS--CEESHHHHHHHHHHHHHHHHTTCTTCEEEEEEC-------
T ss_pred hhHHHHHhCCeEEEEEcC--------CCCCceEECCCC--CcccccHHHHHHHHHHHHHhcCCCCceEEEEEC-------
Confidence 567888889999999986 799999987654 88 9999999999986 57 89998865
Q ss_pred cCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHH
Q psy16206 469 LNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATA 548 (821)
Q Consensus 469 ~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~ 548 (821)
+|.+++.+|.+|++|+++++++.+++|.+.+.||.||+..+.+++++++++ ..+ ...++..+..+
T Consensus 71 ------~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~-i~s-l~dL~g~~v~~------- 135 (287)
T 2vha_A 71 ------TSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGD-IKD-FADLKGKAVVV------- 135 (287)
T ss_dssp ------CTTTHHHHHHTTSCSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTSS-CCS-GGGGTTCEEEE-------
T ss_pred ------CHHHHHHHHHCCCeeEEeccccCCcchhhcccccceeeecceEEEEECCCC-CCC-HHHcCCCEEEE-------
Confidence 589999999999999998788999999999999999999999999998865 223 23333322111
Q ss_pred HHHHHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhh-h---ccCCcccccCchhHHHHHHhccCceEEEecccchhh
Q psy16206 549 YLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAM-E---SSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEY 624 (821)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~ 624 (821)
. .. ..+......+ . .....+.+.+..+++.+|.. |++|+++.+...+.+
T Consensus 136 ----------------------~-~g---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-G~vDa~i~~~~~~~~ 188 (287)
T 2vha_A 136 ----------------------T-SG---TTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLES-GRAVAFMMDDALLAG 188 (287)
T ss_dssp ----------------------E-TT---SHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT-TSCSEEEEEHHHHHH
T ss_pred ----------------------e-CC---CcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHc-CCeeEEEeChHHHHH
Confidence 0 01 1111111111 1 11223467788999999998 999999999999999
Q ss_pred hhhhc---CCceeecceecCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 625 EVEKN---CDLMQVGGLLDSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 625 ~~~~~---~~~~~~~~~~~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
++++. ..+.+++..+...+++++++| ++|++.||++|.++++ +|++.+|++||++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~--~g~~~~i~~k~~~~ 249 (287)
T 2vha_A 189 ERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQT--SGEAEKWFDKWFKN 249 (287)
T ss_dssp HHTTSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHS
T ss_pred HHHhCCCCCceEecCCccccCceEEEEeCCCHHHHHHHHHHHHHHHh--CchHHHHHHHHcCC
Confidence 88764 356777766677789999999 7799999999999999 99999999999864
No 70
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.75 E-value=2.7e-19 Score=188.18 Aligned_cols=227 Identities=17% Similarity=0.217 Sum_probs=178.7
Q ss_pred hhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHc---CCeEEEEEecCCcccccCCCC
Q psy16206 398 EKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANEL---NFTYKFVLERENTYGTLNPQT 473 (821)
Q Consensus 398 ~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l---~~~~~~~~~~~~~~g~~~~~~ 473 (821)
.+..+.+.++|+|++.. ++|||.+.++++ ++ |+.+|+++.+++++ |++++++.+
T Consensus 47 ~~~~~~~~~~l~vg~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~~~~g~~v~~~~~------------ 104 (291)
T 2yjp_A 47 TVAAIKEKGVIRIGVFG--------DKPPFGYVDANG--KNQGFDVEIAKDLAKDLLGSPDKVEFVLT------------ 104 (291)
T ss_dssp SHHHHHHHTCEEEEECS--------EETTTEEECTTS--CEESHHHHHHHHHHHHHHSCGGGEEEEEC------------
T ss_pred hHHHHhcCCeEEEEEcC--------CCCCceEECCCC--CEeehHHHHHHHHHHHhccCCceEEEEEc------------
Confidence 34455566789999865 899999977654 88 99999999999999 999999965
Q ss_pred CcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHH
Q psy16206 474 GKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVS 553 (821)
Q Consensus 474 ~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~ 553 (821)
+|.+++.+|.+|++|++++++..+++|.+.+.|+.||+....++++++++. ..++ +.++..+..+ ..+
T Consensus 105 -~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~~-i~sl-~dL~gk~v~~-------~~g-- 172 (291)
T 2yjp_A 105 -EAANRVEYVRSGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNKP-ITDM-AQLKDQTLLV-------NKG-- 172 (291)
T ss_dssp -CGGGHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTSC-CCSG-GGGTTSEEEE-------ETT--
T ss_pred -cHHHHHHHHhCCCeeEEEeCCCCChHHHccceeccCeeecceEEEEeCCCC-CCCH-HHhCCCEEEE-------ecC--
Confidence 489999999999999998788899999999999999999999999998864 3332 3334332211 001
Q ss_pred HHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCce
Q psy16206 554 LLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLM 633 (821)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~ 633 (821)
..+...............+.+..+++.++.+ |++|+++.+...+.+++++.+++.
T Consensus 173 ------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-G~vDa~~~~~~~~~~~~~~~~~~~ 227 (291)
T 2yjp_A 173 ------------------------TTADAFFTKSHPEVKLLKFDQNTETFDALKD-GRGVALAHDNALLWAWAKENPNFE 227 (291)
T ss_dssp ------------------------SHHHHHHHHHCTTSEEEEESSHHHHHHHHHT-TSSSEEEEEHHHHHHHHHHCTTEE
T ss_pred ------------------------CcHHHHHHHhCCCceEEEeCCHHHHHHHHHc-CCccEEEecHHHHHHHHHhCCCeE
Confidence 1111222221111223456788999999998 999999999999999988877788
Q ss_pred eecceecCCCc-ccccCC--chhhcccccceeEEEEeecCCccccccCCCCCccc
Q psy16206 634 QVGGLLDSKGY-GIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGELYG 685 (821)
Q Consensus 634 ~~~~~~~~~~~-~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~~g 685 (821)
++...+...++ +++++| ++|++.||++|.++++ +|++.+|++||++...|
T Consensus 228 ~~~~~~~~~~~~~~~~~k~~~~l~~~l~~al~~l~~--~g~~~~i~~k~~~~~~~ 280 (291)
T 2yjp_A 228 VAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKK--DGRLKAAYEKTLLPVYG 280 (291)
T ss_dssp EEECCSSSCEEECCEEETTCHHHHHHHHHHHHHHHH--HSHHHHHHHHHTHHHHG
T ss_pred EcCCcccCCcceEEEEeCCCHHHHHHHHHHHHHHHh--CChHHHHHHHhcccccC
Confidence 87777777788 999999 7899999999999999 99999999999975433
No 71
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.75 E-value=6.1e-19 Score=183.51 Aligned_cols=223 Identities=18% Similarity=0.258 Sum_probs=173.5
Q ss_pred hhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcc
Q psy16206 398 EKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKW 476 (821)
Q Consensus 398 ~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~ 476 (821)
....+.++++|+|++.. ++|||.+.+ + +++ |+.+|+++.+++++|++++++.. +|
T Consensus 34 ~~~~~~~~~~l~v~~~~--------~~~P~~~~~-~--g~~~G~~~dl~~~i~~~~g~~v~~~~~-------------~~ 89 (272)
T 2pvu_A 34 GGDGGATKKKVVVGTDA--------AFAPFEYMQ-K--GKIVGFDVDLLDAVMKAAGLDYELKNI-------------GW 89 (272)
T ss_dssp ----CCCCCCEEEEECC--------CBTTTBEEE-T--TEEESHHHHHHHHHHHHHTCCEEEEEC-------------CH
T ss_pred cccccccCCeEEEEECC--------CCCCeEEec-C--CeEEEEHHHHHHHHHHHhCCceEEEEC-------------CH
Confidence 44556777899999986 899999974 3 488 99999999999999999999865 49
Q ss_pred hHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHH
Q psy16206 477 NGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLL 556 (821)
Q Consensus 477 ~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~ 556 (821)
.+++.+|.+|++|++++++..+++|.+.+.|+.||+....+++++++.+ ..++ +.++..+..+
T Consensus 90 ~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~-i~~~-~dL~g~~i~~--------------- 152 (272)
T 2pvu_A 90 DPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSP-VKNA-LDLKGKTIGV--------------- 152 (272)
T ss_dssp HHHHHHHHHTSSSEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTCC-CCSG-GGGTTSCEEE---------------
T ss_pred HHHHHHHhCCCCCEEEeCCcCCHHHHhcCccchhhhccceEEEEECCCC-CCCH-HHhCCCeEEE---------------
Confidence 9999999999999998778899999999999999999999999998865 3332 3333332211
Q ss_pred HhhhhcCCCcceeEeecCCChHHHHHHHHhh-hccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcC--Cce
Q psy16206 557 FFLARISSGSRLRYSAKNSNVSLYQRMHSAM-ESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNC--DLM 633 (821)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~--~~~ 633 (821)
.. ...+....... ........+.+..+++++|.+ |++|+++.+...+.+++++.. ++.
T Consensus 153 --------------~~----g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~-G~vDa~~~~~~~~~~~~~~~~~~~l~ 213 (272)
T 2pvu_A 153 --------------QN----ATTGQEAAEKLFGKGPHIKKFETTVVAIMELLN-GGVDAVITDNAVANEYVKNNPNKKLQ 213 (272)
T ss_dssp --------------ET----TSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHT-TSCSEEEEEHHHHHHHHHHCGGGCEE
T ss_pred --------------Ec----CchHHHHHHHhcCCCCeEEEcCCHHHHHHHHHc-CCccEEEeCHHHHHHHHHhCCCCceE
Confidence 10 11112222221 112223467788999999998 999999999999999888764 367
Q ss_pred eeccee--cCCCcccccCC-chhhcccccceeEEEEeecCCccccccCCCCC
Q psy16206 634 QVGGLL--DSKGYGIAMPT-SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 634 ~~~~~~--~~~~~~~a~~k-~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
++.... ...+++++++| ++|++.+|++|.++++ +|++.+|++||++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~--~g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 214 VIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVIN--SGKYTEIYKKWFGK 263 (272)
T ss_dssp EECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHH--TTHHHHHHHHHHSS
T ss_pred EeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHh--CChHHHHHHHHcCC
Confidence 766543 56689999999 9999999999999999 99999999999874
No 72
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.75 E-value=1.4e-18 Score=180.08 Aligned_cols=219 Identities=15% Similarity=0.164 Sum_probs=174.4
Q ss_pred cCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHH
Q psy16206 404 ENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGE 482 (821)
Q Consensus 404 ~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 482 (821)
+.++|+|++.. ++|||.+.++++ ++ |+++|+++.+++++|++++++.. +|.+++.+
T Consensus 29 ~~~~l~v~~~~--------~~~P~~~~~~~g--~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~ 85 (268)
T 3qax_A 29 RNRIWIVGTNA--------TYPPFEYVDAQG--EVVGFDIDLAKAISEKLGKQLEVREF-------------AFDALILN 85 (268)
T ss_dssp --CEEEEEECS--------CBTTTBEECTTS--CEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHH
T ss_pred cCCeEEEEECC--------CCCCceEECCCC--CEEEEEHHHHHHHHHHhCCeEEEEec-------------CHHHHHHH
Confidence 45678888886 799999987655 88 99999999999999999999864 69999999
Q ss_pred HHcCCcceEEeccccchhhhcceeecccce--eeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhh
Q psy16206 483 LQEQRADLAICDLTITSERRAAVDFTMPFM--TLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLA 560 (821)
Q Consensus 483 l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~ 560 (821)
+.+|++|+++++++.+++|.+.+.| .||+ ..+.++++++++....+ .+.++..+..+
T Consensus 86 l~~g~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~~i~~-~~dL~g~~i~~------------------- 144 (268)
T 3qax_A 86 LKKHRIDAILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKRSLETPV-LPLTQYSSVAV------------------- 144 (268)
T ss_dssp HHHTSSSEECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEETTSCSCC-CCGGGSSCEEE-------------------
T ss_pred HhCCCccEEeecCccCHhHhcceee-ecceecccceEEEEECCCCCCCC-HHHhCCCEEEE-------------------
Confidence 9999999998789999999999999 9999 99999999988432333 23334332211
Q ss_pred hcCCCcceeEeecCCChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeecceec
Q psy16206 561 RISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGGLLD 640 (821)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~~~~ 640 (821)
. ....+....... .......+.+..++++++.+ |++|+++.+...+.+++++.+++.++...+.
T Consensus 145 ----------~----~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~-G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (268)
T 3qax_A 145 ----------Q----TGTYQEHYLLSQ-PGICVRSFDSTLEVIMEVRY-GKSPVAVLEPSVGRVVLKDFPNLVATRLELP 208 (268)
T ss_dssp ----------E----TTSHHHHHHHTS-TTCCEEEESCHHHHHHHHHT-TSSSEEEECHHHHHHHGGGCTTEEEEEEECC
T ss_pred ----------e----cCcHHHHHHHhC-CCceEEecCCHHHHHHHHHc-CCCCEEEecHHHHHHHHHhCCCcEEecCccC
Confidence 0 111222222221 12233467789999999999 9999999999999999998887888777777
Q ss_pred CCC----cccccCC--chhhcccccceeEEEEeecCCccccccCCCCCcc
Q psy16206 641 SKG----YGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPETGELY 684 (821)
Q Consensus 641 ~~~----~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~g~~~ 684 (821)
..+ ++++++| ++|++.+|++|.++++ +|++.+|++||++...
T Consensus 209 ~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~--~g~~~~i~~k~~~~~~ 256 (268)
T 3qax_A 209 PECWVLGCGLGVAKDRPEEIQTIQQAITDLKS--EGVIQSLTKKWQLSEV 256 (268)
T ss_dssp GGGCBCCEEEEECTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHTTCSCC
T ss_pred cccccccEEEEEeCCCHHHHHHHHHHHHHHHH--CCcHHHHHHHHcCCcc
Confidence 777 9999999 7899999999999999 9999999999997543
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.63 E-value=5.4e-17 Score=167.07 Aligned_cols=222 Identities=16% Similarity=0.142 Sum_probs=166.1
Q ss_pred hhhhhccCceEEEEeeccceeeeeecCCCceeecCCCCCce-eeHHHHHHHHHHHc---CCeEEEEEecCCcccccCCCC
Q psy16206 398 EKKEKIENRTLTVTSKTFAKLRVLFQGEPYMMKNPETGELY-GYSVDLIKMIANEL---NFTYKFVLERENTYGTLNPQT 473 (821)
Q Consensus 398 ~~~~~~~~~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~-G~~~dll~~ia~~l---~~~~~~~~~~~~~~g~~~~~~ 473 (821)
.+..+.+.++|+|++.. .+|||.+.+.++ +++ |+++|+++.+++++ |++++++..
T Consensus 30 ~~~~~~~~~~l~vg~~~--------~~~p~~~~~~~~-g~~~G~~~~l~~~~~~~~~~pg~~v~~~~~------------ 88 (259)
T 2v25_A 30 KLESIKSKGQLIVGVKN--------DVPHYALLDQAT-GEIKGFEVDVAKLLAKSILGDDKKIKLVAV------------ 88 (259)
T ss_dssp HHHHHHHHTCEEEEECS--------EETTTEEEETTT-TEEESHHHHHHHHHHHHHHSCTTSEEEEEC------------
T ss_pred hHHHHHhCCeEEEEECC--------CCCCeEEEECCC-CeEEEeeHHHHHHHHHHhcCCCcceEEEEc------------
Confidence 34555667889999876 799999976322 388 99999999999999 999999865
Q ss_pred CcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHH
Q psy16206 474 GKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVS 553 (821)
Q Consensus 474 ~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~ 553 (821)
+|.+++.+|.+|++|++++++..+++|.+.+.|+.||+....+++++++.+ ..++ +.+...+.
T Consensus 89 -~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-i~~~-~dL~g~~i-------------- 151 (259)
T 2v25_A 89 -NAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKK-YKSL-ADMKGANI-------------- 151 (259)
T ss_dssp -CTTTHHHHHHTTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGGC-CCSG-GGCTTCEE--------------
T ss_pred -CHHHHHHHHhCCCCCEEEecCccCHHHHhcCcccccceeCceEEEEeCCCC-CCCH-HHhCCCEE--------------
Confidence 589999999999999998778889999999999999999999999998765 2222 22332221
Q ss_pred HHHHhhhhcCCCcceeEeecCCChHH-HHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCc
Q psy16206 554 LLLFFLARISSGSRLRYSAKNSNVSL-YQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDL 632 (821)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~ 632 (821)
+.. ....... ..............+.+.+..+++.++.. |++|+++.+...+.+++++.++
T Consensus 152 ---------------~~~-~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~-g~vDa~~~~~~~~~~~~~~~~~- 213 (259)
T 2v25_A 152 ---------------GVA-QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDA-KRVDAFSVDKSILLGYVDDKSE- 213 (259)
T ss_dssp ---------------EEE-TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT-TSSSEEEEEHHHHTTTCCTTEE-
T ss_pred ---------------EEe-cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHc-CCCcEEEecHHHHHHHHHhCCC-
Confidence 111 1111111 11111111110123467788999999998 9999999999998888876554
Q ss_pred eeecceecCCCcccccCC--chhhcccccceeEEEEeecCCccccccCCC
Q psy16206 633 MQVGGLLDSKGYGIAMPT--SKFLAKFSFGFAKLRVLFQGEPYMMKNPET 680 (821)
Q Consensus 633 ~~~~~~~~~~~~~~a~~k--~~l~~~in~al~~l~~~~~g~~~~i~~k~~ 680 (821)
++...+...+++++++| +++++.+|++|.++++ + +.+|++||.
T Consensus 214 -~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~~~~--~--~~~i~~k~~ 258 (259)
T 2v25_A 214 -ILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKN--E--IDALAKKWG 258 (259)
T ss_dssp -ECSCCCSEEEECCEEETTCHHHHHHHHHHHHHTHH--H--HHHHHHHTT
T ss_pred -ccccccccceeEEEEcCCCHHHHHHHHHHHHHHHH--H--HHHHHHHhC
Confidence 44455566788999999 6899999999999999 7 888888884
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.71 E-value=5.2e-09 Score=110.01 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=131.5
Q ss_pred eeeeee--cCCCceeecCCCCCceeeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEec
Q psy16206 417 KLRVLF--QGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICD 494 (821)
Q Consensus 417 ~lrVgv--~~~P~~~~~~~~~~~~G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~ 494 (821)
+||||+ .++|+.+... ..++++.|++++|++++++... +|++++.+|.+|++|+++.+
T Consensus 5 ~l~iG~~p~~~p~~~~~~--------~~~l~~~l~k~lG~~ve~~~~~------------~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 5 VINFGIISTESSQNLKSI--------WEPFLKDMSQQTGYQVKAFFAP------------DYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp EEEEEECCSSCHHHHHHH--------HHHHHHHHHHHHSSEEEEECCS------------SHHHHHHHHHTTSCSEEECC
T ss_pred EEEEEEecCCCHHHHHHH--------HHHHHHHHHHHhCCCEEEEeCC------------CHHHHHHHHHcCCCCEEEEC
Confidence 455555 6777766432 2589999999999999998543 79999999999999999644
Q ss_pred -cccchh--hhcceeecc-------cceeeceEEEEEcCCCCCCCccccc---ccCchhHHHHHHHHHHHHHHHHHhhhh
Q psy16206 495 -LTITSE--RRAAVDFTM-------PFMTLGISILYRKPAKKQPDLFSFL---EPLSFDVWVYMATAYLGVSLLLFFLAR 561 (821)
Q Consensus 495 -~~~t~~--R~~~~~fS~-------p~~~~~~~l~~~~~~~~~~~~~~~l---~~~~~~vw~~~~~~~~~~~~~~~~~~~ 561 (821)
.++... |.....|+. |++ ..+++++++++ ..++.+++ +..+
T Consensus 65 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~--~~~lvv~~ds~-i~sl~DL~~~~kgk~----------------------- 118 (310)
T 3n5l_A 65 NKAAMEAVDRAHGEIFAQTVAASGAPGY--WSLLIANKDSK-IDSLEDMLANAKSLT----------------------- 118 (310)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTCCSEE--EEEEEEETTCS-CCSHHHHHHTGGGCE-----------------------
T ss_pred cHHHHHHHHhcCCeEEEEEeccCCCcce--EEEEEEECCCC-CCCHHHHhhhcCCCE-----------------------
Confidence 444433 333344543 333 34788888765 33333321 2111
Q ss_pred cCCCcceeEeecCCChHH-HHHHHHhhhccC-------CcccccCchhHHHHHHhccCceEEEecccchhhhhhhc----
Q psy16206 562 ISSGSRLRYSAKNSNVSL-YQRMHSAMESSR-------PSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN---- 629 (821)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~---- 629 (821)
++|....+.... ..... .+.... ..++..+..+++..|.. |++|+.+.+...+..+++..
T Consensus 119 ------ia~~~~gs~~~~l~~~~~-l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~-G~vDa~~~~~~~~~~~~~~~~~~~ 190 (310)
T 3n5l_A 119 ------FGNGDPNSTSGYLVPGYY-VFAKNNVDPVKAFKRTLNSSHEVNALAVAN-KQVDVATFNTEGMERLELTQPEKA 190 (310)
T ss_dssp ------EEECCTTCTTTTHHHHHH-TTTTTTCCHHHHSSEEEECCHHHHHHHHHT-TSSSEEEEEHHHHHHHHHHCHHHH
T ss_pred ------EEecCCCccHhHHHHHHH-HHHHcCCChHHhccccccCCHHHHHHHHHc-CCccEEEecchhHHHHHHhCccch
Confidence 122111111111 11100 001111 11233456778999998 99999999999998888764
Q ss_pred CCceeecceecCCCcccccCC---chhhcccccceeEEEEeecCCccccccCC
Q psy16206 630 CDLMQVGGLLDSKGYGIAMPT---SKFLAKFSFGFAKLRVLFQGEPYMMKNPE 679 (821)
Q Consensus 630 ~~~~~~~~~~~~~~~~~a~~k---~~l~~~in~al~~l~~~~~g~~~~i~~k~ 679 (821)
.+++++.......++++++++ +++++.||++|.++.+ ++++.+++++|
T Consensus 191 ~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~--d~~~~~~l~~~ 241 (310)
T 3n5l_A 191 RQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGA--NAEQKKVLADL 241 (310)
T ss_dssp TTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCC--SHHHHHHHHHT
T ss_pred hCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCC--ChhHHHHHHhc
Confidence 467776654333456788998 6799999999999999 88777766554
No 75
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.64 E-value=6.4e-08 Score=94.72 Aligned_cols=166 Identities=13% Similarity=0.053 Sum_probs=114.3
Q ss_pred ce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchh------hhcceeecc
Q psy16206 437 LY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSE------RRAAVDFTM 509 (821)
Q Consensus 437 ~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~------R~~~~~fS~ 509 (821)
+| |+.--|-+.+. |+++++..+. .|+..+.+|++|++|+++.++..+++ |+..++|+.
T Consensus 29 ~yeGlatgl~~~f~---gi~~~i~~mr------------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~ 93 (231)
T 2ozz_A 29 LYEGLASGLKAQFD---GIPFYYAHMR------------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGP 93 (231)
T ss_dssp HHHHHHHHHHHTTT---TSCEEEEECS------------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCT
T ss_pred hhhHHHHHHHHHhc---CCcEEEEEcc------------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCC
Confidence 56 88888888884 9999998653 79999999999999999999999999 999999999
Q ss_pred cceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhc
Q psy16206 510 PFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMES 589 (821)
Q Consensus 510 p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (821)
||+.....+++++++.... .+..+ .. ...+. ..+-+....
T Consensus 94 ~yYv~~h~li~~~~~~~~i--------krVGv-----------------------------d~--gS~dq-~~lt~~~~~ 133 (231)
T 2ozz_A 94 HTYVGEHQLICRKGESGNV--------KRVGL-----------------------------DS--RSADQ-KIMTDVFFG 133 (231)
T ss_dssp TSSSCCEEEEEETTCGGGC--------CEEEE-----------------------------CT--TCHHH-HHHHHHHHT
T ss_pred CccccCeEEEEeCCCcccc--------EEEEe-----------------------------cC--CChhH-HHHHhhhcC
Confidence 9998888888888763111 11110 00 00000 011111112
Q ss_pred cCCcccc-cCchhHHHHHHhccCceEEEe--cccchhhhhhhcCCceeecc-----eecCCCcccccCC--chhhccccc
Q psy16206 590 SRPSVFV-KSNKEGVERVVKEKGKYAFFM--ESTGIEYEVEKNCDLMQVGG-----LLDSKGYGIAMPT--SKFLAKFSF 659 (821)
Q Consensus 590 ~~~~~~~-~~~~~~~~~v~~~g~~da~i~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~~k--~~l~~~in~ 659 (821)
+.....+ .+..+++.++.+ |++||+++ |..... .++++....- ........++++| ++|.+.||+
T Consensus 134 g~~Ve~ve~~y~~~i~~L~~-G~IDA~Iwn~d~~~a~----~~~~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~ 208 (231)
T 2ozz_A 134 DSDVERVDLSYHESLQRIVK-GDVDAVIWNVVAENEL----TMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRA 208 (231)
T ss_dssp TSCCEEEECCHHHHHHHHHH-TSCCEEEEEC-CHHHH----HHTTEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHc-CCccEEEEcCcchhhh----cCCCcceeccccccccccCCceEEEEECCCHHHHHHHHH
Confidence 2222355 788999999999 99999999 766655 3333332221 2234455688999 789999998
Q ss_pred cee
Q psy16206 660 GFA 662 (821)
Q Consensus 660 al~ 662 (821)
+|.
T Consensus 209 ~I~ 211 (231)
T 2ozz_A 209 VVD 211 (231)
T ss_dssp HCC
T ss_pred HhH
Confidence 876
No 76
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.56 E-value=1.6e-08 Score=106.67 Aligned_cols=213 Identities=11% Similarity=0.042 Sum_probs=132.4
Q ss_pred ceEEEEeeccceeeeeecCCCceeecCCCCCceeeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHc
Q psy16206 406 RTLTVTSKTFAKLRVLFQGEPYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE 485 (821)
Q Consensus 406 ~~l~v~~~~g~~lrVgv~~~P~~~~~~~~~~~~G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 485 (821)
++|++++.+ .++|..+.. .--++++.|++++|++++++... +|++++.+|.+
T Consensus 14 ~~l~~Gv~p--------~~~~~~~~~--------~~~~l~~~L~k~lG~~ve~~~~~------------~~~~~i~aL~~ 65 (321)
T 3p7i_A 14 KALNFGIIS--------TESQQNLKP--------QWTPFLQDMEKKLGVKVNAFFAP------------DYAGIIQGMRF 65 (321)
T ss_dssp CCEEEEECC--------SSCHHHHHH--------HHHHHHHHHHHHHTSCEEEECCS------------SHHHHHHHHHT
T ss_pred CcEEEEEec--------CCCHHHHHH--------HHHHHHHHHHHHHCCCEEEEecC------------CHHHHHHHHHc
Confidence 456666664 566655432 23589999999999999998543 79999999999
Q ss_pred CCcceEEe-ccccchhhh--cceeec-------ccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHH
Q psy16206 486 QRADLAIC-DLTITSERR--AAVDFT-------MPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLL 555 (821)
Q Consensus 486 g~~Di~~~-~~~~t~~R~--~~~~fS-------~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~ 555 (821)
|++|+++. +.+++..|+ ....|+ .|++ ..+++++++++ ..++.+++.--+..
T Consensus 66 G~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y--~~~lvv~~ds~-i~sl~DL~~~~kgk--------------- 127 (321)
T 3p7i_A 66 NKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGY--WSVLIVNKDSP-INNLNDLLAKRKDL--------------- 127 (321)
T ss_dssp TSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSB--CEEEEEETTCS-CCSHHHHHHTGGGC---------------
T ss_pred CCCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcce--EEEEEEECCCC-CCCHHHHHhhcCCC---------------
Confidence 99999964 455555433 333344 2433 34788888765 33433321100111
Q ss_pred HHhhhhcCCCcceeEeecCCChHH-HHHH-H-Hh--hhcc-CCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc
Q psy16206 556 LFFLARISSGSRLRYSAKNSNVSL-YQRM-H-SA--MESS-RPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN 629 (821)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~--~~~~-~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~ 629 (821)
+++|....+.... .... + .. +... ...++..+..+++.+|.. |++|+.+.+...+..+++..
T Consensus 128 -----------~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~-G~vDa~~~~~~~~~~~~~~~ 195 (321)
T 3p7i_A 128 -----------TFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVAN-KQVDVATNNTENLDKLKTSA 195 (321)
T ss_dssp -----------EEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHT-TSSSEEEEEHHHHHTHHHHC
T ss_pred -----------EEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHC-CCceEEEechHHHHHHHHhC
Confidence 1122111111111 1111 0 11 0000 011234456788999998 99999999999888888753
Q ss_pred ----CCceeecceecCCCcccccCC---chhhcccccceeEEEEeecCCccccccC
Q psy16206 630 ----CDLMQVGGLLDSKGYGIAMPT---SKFLAKFSFGFAKLRVLFQGEPYMMKNP 678 (821)
Q Consensus 630 ----~~~~~~~~~~~~~~~~~a~~k---~~l~~~in~al~~l~~~~~g~~~~i~~k 678 (821)
.+++++.......++.+++++ +++++.|+++|.++.+ +++..+++++
T Consensus 196 p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~--d~~~~~~l~~ 249 (321)
T 3p7i_A 196 PEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGK--TPEEKAVLER 249 (321)
T ss_dssp HHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTC--SHHHHHHHHH
T ss_pred cchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHh
Confidence 467777654444456788998 6799999999999999 7766655443
No 77
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.02 E-value=0.0002 Score=74.44 Aligned_cols=198 Identities=9% Similarity=-0.050 Sum_probs=124.6
Q ss_pred CcEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecC-CChhHHHHHHHHHhhcCeEEEE-cCCCc
Q psy16206 1 MKIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVEN-YDSLHTAKLMCNATSEGIAAIF-GPQSI 74 (821)
Q Consensus 1 i~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~-~~~~~a~~~a~~li~~~V~aii-Gp~~s 74 (821)
++||++.+... ..+..+++.+.++. | +++.+.+.+. .++....+....++.++|++|| .|...
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~---------g--~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~ 72 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEEL---------K--VDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSD 72 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHH---------T--CEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCS
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHh---------C--cEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCH
Confidence 47999999765 55666777666653 2 3444555322 4788888888889988999887 56555
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCC--CCEEEEEEecCC---chhHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMD--WDTFTIIYETHD---NLVYL 149 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~--w~~v~ii~~~~~---~~~~~ 149 (821)
.........+...++|+|........ ....+.+..+.+++...++.+++.+...| -++++++..+.. ...+.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~---~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~ 149 (297)
T 3rot_A 73 TAFSKSLQRANKLNIPVIAVDTRPKD---KTKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRA 149 (297)
T ss_dssp STTHHHHHHHHHHTCCEEEESCCCSC---TTTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCcc---ccccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHH
Confidence 54455555677789999998644332 11123455677888888889999888888 899999976543 22333
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
+.+.+... ..|+.+...............++++.+. .++.|+ +.....+..+++++++.|+.-
T Consensus 150 ~Gf~~~l~-------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~v 214 (297)
T 3rot_A 150 YGIKTILQ-------DKGIFFEELDVGTDPNQVQSRVKSYFKIHPETNIIF-CLTSQALDPLGQMLLHPDRYD 214 (297)
T ss_dssp HHHHHHHH-------HTTCEEEEEECCSCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHHHHT
T ss_pred HHHHHHHH-------hcCCeEEEeecCCChHHHHHHHHHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcCCcc
Confidence 33333333 2245554333222122334455554444 345554 455677788999999999853
No 78
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=97.94 E-value=0.00025 Score=72.54 Aligned_cols=194 Identities=10% Similarity=0.032 Sum_probs=120.1
Q ss_pred CcEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcC-eEEEEcCC-Cc
Q psy16206 1 MKIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEG-IAAIFGPQ-SI 74 (821)
Q Consensus 1 i~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~-V~aiiGp~-~s 74 (821)
++||++.+... .....+++-+.++. |+++.+...+ ...++....+....++.++ |++||-.. .+
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~---------g~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~ 70 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA---------GVTLLHRSTK-DDGDIAGQIQILSYHLSQAPPDALILAPNSA 70 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH---------TCEEEECCCS-STTCHHHHHHHHHHHHHHSCCSEEEECCSST
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc---------CCEEEEECCC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCH
Confidence 58999998655 44556666665553 3344444333 2367777778888898888 99998543 33
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC----CCCEEEEEEecCC---chh
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM----DWDTFTIIYETHD---NLV 147 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~----~w~~v~ii~~~~~---~~~ 147 (821)
.........+...++|+|........ .+....+.+++...++.+++.+... |.++++++..+.. ...
T Consensus 71 ~~~~~~~~~~~~~~ipvV~~~~~~~~------~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~ 144 (276)
T 3ksm_A 71 EDLTPSVAQYRARNIPVLVVDSDLAG------DAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQ 144 (276)
T ss_dssp TTTHHHHHHHHHTTCCEEEESSCCSS------SCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCcEEEEecCCCC------CCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHH
Confidence 34444455677789999998644321 1223446678888888888888877 8999999986533 233
Q ss_pred HHHHHHHhcCCCCCcCCCC-CCeEEEEEcCC-CCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 148 YLQQVLENAHDDDKEIRPG-RPSVTIRQLPP-DTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~-g~~v~~~~~~~-~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
+.+.+.+... .. |..+....... +..+....++++.+.. ++.|+ +.+...+..+++++++.|+
T Consensus 145 R~~gf~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 145 REQGFLDVLR-------KHDKIRIIAAPYAGDDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp HHHHHHHHHT-------TCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-------hCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHcCC
Confidence 4444544444 33 44443211111 1222334455554443 45444 4455667789999999998
No 79
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=97.90 E-value=0.00065 Score=71.03 Aligned_cols=194 Identities=11% Similarity=-0.010 Sum_probs=118.1
Q ss_pred CcEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 1 MKIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 1 i~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
++||++.+..+ ..+..+++.+.++. |+++ .+.+.+..++....+...+++.++|++||. |..+..
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~---------g~~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 70 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL---------GVDT--KFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTA 70 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH---------TCEE--EEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTT
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc---------CCEE--EEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH
Confidence 57999998765 33445555555442 2344 343323367777778888888889998884 544443
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---chhHHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD---NLVYLQQ 151 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~~~~~~~ 151 (821)
.......+...++|+|........ .+.+..+.+++...++.+++.+... |.++++++..... ...+.+.
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~g 144 (313)
T 2h3h_A 71 VIPTIKKALEMGIPVVTLDTDSPD------SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQG 144 (313)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTT------SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCCC------cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHH
Confidence 333334456689999988543221 1223446677777888888888776 9999999987632 2334444
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEc-CCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQL-PPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.+... ..|+.+..... ..+..+....++++.+. .+++|+. .+...+..+++++++.|+.
T Consensus 145 f~~~l~-------~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~p 207 (313)
T 2h3h_A 145 FKDAIK-------DSEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGKV 207 (313)
T ss_dssp HHHHHT-------TSSCEEEEEEECSSCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTCT
T ss_pred HHHHhc-------CCCCEEEEeecCCCCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCCC
Confidence 444444 33555532222 12122334556666554 3466664 4455677899999999953
No 80
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=97.75 E-value=0.0026 Score=65.94 Aligned_cols=193 Identities=12% Similarity=0.045 Sum_probs=120.9
Q ss_pred cEEEEeCCC-c----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcc
Q psy16206 2 KIVGIFGPN-E----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~-~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~ 75 (821)
+||++++.. . ..+..+++-+.++. +|+.+.+...+.+..++..-.+....++.++|++||- |....
T Consensus 10 ~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 81 (304)
T 3gbv_A 10 TFACLLPKHLEGEYWTDVQKGIREAVTTY--------SDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQ 81 (304)
T ss_dssp EEEEEEECCCTTSHHHHHHHHHHHHHHHT--------GGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGG
T ss_pred eEEEEecCCCCchHHHHHHHHHHHHHHHH--------HhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChH
Confidence 689999875 4 44555555555442 1446666665434467777777788888889998874 44333
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCC--CEEEEEEecC----C-----
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDW--DTFTIIYETH----D----- 144 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w--~~v~ii~~~~----~----- 144 (821)
........+...++|+|........ . +.+-.+.+++...++.+++.+...|. ++++++.... .
T Consensus 82 ~~~~~~~~~~~~~iPvV~~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~ 155 (304)
T 3gbv_A 82 YTKGFTDALNELGIPYIYIDSQIKD---A---PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQE 155 (304)
T ss_dssp GTHHHHHHHHHHTCCEEEESSCCTT---S---CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCC---C---CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHH
Confidence 3334445566779999998643321 1 12445677888888889999988887 9999997421 1
Q ss_pred -chhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 145 -NLVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
-...+.+.+++.+ . ...+... .-..+.......++++.+. .+++|+..... +..+++++++.|+
T Consensus 156 ~R~~gf~~~l~~~g-------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~ 223 (304)
T 3gbv_A 156 SREIGFRQYMQEHH-------P-ACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK 223 (304)
T ss_dssp HHHHHHHHHHHHHC-------T-TSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhC-------C-CcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC
Confidence 2445556666654 2 2223222 2122234455556665544 56777765544 6779999999998
No 81
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=97.74 E-value=0.002 Score=67.43 Aligned_cols=192 Identities=9% Similarity=-0.006 Sum_probs=115.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
+||++.+..+ ..+..+++.+.++.+ +++.+.+....++....+....|+.++|++|| .|..+..
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g-----------~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~ 73 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKALG-----------IDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDG 73 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHHT-----------CEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSST
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHhC-----------CEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 6899998665 445566666665532 23444421336787777888899989999866 6666554
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh---CCCCEEEEEEecCC------chh
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND---MDWDTFTIIYETHD------NLV 147 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~---~~w~~v~ii~~~~~------~~~ 147 (821)
...+...+...+||+|.+...... . ....+....++...++..++++.. .|.++++++..... ...
T Consensus 74 ~~~~~~~a~~~gipvV~~d~~~~~---~--~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~ 148 (316)
T 1tjy_A 74 LCPALKRAMQRGVKILTWDSDTKP---E--CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVK 148 (316)
T ss_dssp THHHHHHHHHTTCEEEEESSCCCG---G--GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHH
T ss_pred HHHHHHHHHHCcCEEEEecCCCCC---C--CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHH
Confidence 444555677789999998543221 1 122222256766777888888766 57899999985432 234
Q ss_pred HHHHHHHhcCCCCCcCCCCCCeEEEEEc-CCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 148 YLQQVLENAHDDDKEIRPGRPSVTIRQL-PPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
.+.+.+++.. . ++.+..... ..+..+....++++.+.. ++.|+ +.....+.-+++++++.| .
T Consensus 149 g~~~~l~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~-~~nD~~A~g~~~al~~~G-~ 213 (316)
T 1tjy_A 149 EAKAKISQEH-------P-GWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAAENLK-R 213 (316)
T ss_dssp HHHHHHHHHC-------T-TEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEE-ECSTTHHHHHHHHHHHTT-C
T ss_pred HHHHHHHhhC-------C-CcEEEEeccCCCCHHHHHHHHHHHHHhCCCCCEEE-ECCCccHHHHHHHHHHcC-C
Confidence 4455554432 1 333332222 121223445556655543 45554 345566778899999998 5
No 82
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=97.70 E-value=0.0014 Score=68.12 Aligned_cols=196 Identities=9% Similarity=0.020 Sum_probs=115.8
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
+||++.+.++ ..+.+|++ +.+++.|. ..|..+.+.+.|++ +++.+..+....|.+++|++||..... ...
T Consensus 10 ~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy--~~g~~v~l~~~~~~-~~~~~~~~~~~~l~~~~vDgII~~~~~-~~~ 82 (302)
T 2qh8_A 10 KVAVSQIVEHPALDATRQGLL---DGLKAKGY--EEGKNLEFDYKTAQ-GNPAIAVQIARQFVGENPDVLVGIATP-TAQ 82 (302)
T ss_dssp EEEEEESSCCHHHHHHHHHHH---HHHHHTTC--CBTTTEEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEEESHH-HHH
T ss_pred EEEEEEeccChhHHHHHHHHH---HHHHHcCC--CCCCceEEEEecCC-CCHHHHHHHHHHHHhCCCCEEEECChH-HHH
Confidence 6899866666 33444444 44555654 44668889899955 889888888888988899999875432 222
Q ss_pred HHHHHhccCCCceeeeccC-CCC---CC-CCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC--chhHH
Q psy16206 79 IIESMCQMFDIPHVEAFWD-PNK---YF-IPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD--NLVYL 149 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~-~~~---~~-~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~--~~~~~ 149 (821)
.+.. ...++|+|..... +.. .. .....+++....-. .......+++... |.+++++++.... ...++
T Consensus 83 ~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~~--~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~ 158 (302)
T 2qh8_A 83 ALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDL--SPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLM 158 (302)
T ss_dssp HHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECC--CCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHH
T ss_pred HHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEECC--cCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHHH
Confidence 3332 2678999987533 211 00 01112344444321 1245556667665 9999999997654 22333
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
+.+.+.+. ..|+.+....... ..+....++++.. ++++|++... ..+...++++.+.+.
T Consensus 159 ~g~~~al~-------~~gi~~~~~~~~~-~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 217 (302)
T 2qh8_A 159 ELLKLSAA-------KHGIKLVEATALK-SADVQSATQAIAE-KSDVIYALID-NTVASAIEGMIVAAN 217 (302)
T ss_dssp HHHHHHHH-------HTTCEEEEEECSS-GGGHHHHHHHHGG-GCSEEEECSC-HHHHTTHHHHHHHHH
T ss_pred HHHHHHHH-------HcCCEEEEEecCC-hHHHHHHHHHHhc-cCCEEEECCc-HhHHHHHHHHHHHHH
Confidence 33333333 3356665444332 4667778888863 7888877544 333344555555554
No 83
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.65 E-value=0.0026 Score=65.49 Aligned_cols=192 Identities=10% Similarity=0.071 Sum_probs=117.6
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
+||++.+... ..+..+++-+.++ . | +++.+.+++ .++....+....++.+++++||- |.....
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~---~------g--~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 77 (293)
T 3l6u_A 10 IVGFTIVNDKHEFAQRLINAFKAEAKA---N------K--YEALVATSQ-NSRISEREQILEFVHLKVDAIFITTLDDVY 77 (293)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHH---T------T--CEEEEEECS-SCHHHHHHHHHHHHHTTCSEEEEECSCTTT
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHH---c------C--CEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecCChHH
Confidence 6999998655 3344455544443 2 2 345556633 67777778888888888888874 333333
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-C-CCC-----EEEEEEecCC---ch
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-M-DWD-----TFTIIYETHD---NL 146 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~-~w~-----~v~ii~~~~~---~~ 146 (821)
.......+...++|+|........ .+.+..+.+++...+..+++.+.. + |.+ +++++..... ..
T Consensus 78 ~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~ 151 (293)
T 3l6u_A 78 IGSAIEEAKKAGIPVFAIDRMIRS------DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTN 151 (293)
T ss_dssp THHHHHHHHHTTCCEEEESSCCCC------TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHH
T ss_pred HHHHHHHHHHcCCCEEEecCCCCC------CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHH
Confidence 333445566779999998543331 123455778888888888888777 4 666 9999985443 23
Q ss_pred hHHHHHHHhcCCCCCcCCCC-CCeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 147 VYLQQVLENAHDDDKEIRPG-RPSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~-g~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
.+.+.+.+... .. |+.+....... +..+....++++.+. .+++|+ +++...+..+++++++.|+.
T Consensus 152 ~R~~gf~~~l~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 152 ERHRGFLKGIE-------NEPTLSIVDSVSGNYDPVTSERVMRQVIDSGIPFDAVY-CHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHHHHHT-------TCTTEEEEEEEECTTCHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHH-------hCCCcEEeeeccCCCCHHHHHHHHHHHHHhCCCCCEEE-ECCchHHHHHHHHHHhCCCC
Confidence 44444555554 33 55554332221 122333445555544 345554 45667788899999999985
No 84
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=97.65 E-value=0.0033 Score=64.86 Aligned_cols=193 Identities=9% Similarity=-0.003 Sum_probs=114.3
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++.+... ..+..+++-+.++ . |++ +.+.+++ .++....+....++.++|++||-.......
T Consensus 22 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~---~------g~~--~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 89 (293)
T 2iks_A 22 SIGLVIPDLENTSYTRIANYLERQARQ---R------GYQ--LLIACSE-DQPDNEMRCIEHLLQRQVDAIIVSTSLPPE 89 (293)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHH---T------TCE--EEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCSSCTT
T ss_pred EEEEEeCCCcCcHHHHHHHHHHHHHHH---C------CCE--EEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 6899998544 3344555544443 2 334 4445533 577666677777888899988854333222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---chhHHHHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---NLVYLQQVLE 154 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~~~~~~~~~~ 154 (821)
..+...+...++|+|........ +.+..+..++...+..+++.+...|.++++++..... ...+.+.+.+
T Consensus 90 ~~~~~~~~~~~iPvV~~~~~~~~-------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 162 (293)
T 2iks_A 90 HPFYQRWANDPFPIVALDRALDR-------EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRT 162 (293)
T ss_dssp CHHHHTTTTSSSCEEEEESCCCT-------TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEECCccCc-------CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHH
Confidence 22334456689999988543221 1234566777778888888888889999999987643 2334444444
Q ss_pred hcCCCCCcCCCCCCeEEEEEc-CCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 155 NAHDDDKEIRPGRPSVTIRQL-PPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v~~~~~-~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+. ..|........ ..+..+-...++++.+. .++.|+ +.+...+..+++++++.|+.-+
T Consensus 163 ~l~-------~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP 224 (293)
T 2iks_A 163 AWK-------DDPREVHFLYANSYEREAAAQLFEKWLETHPMPQALF-TTSFALLQGVMDVTLRRDGKLP 224 (293)
T ss_dssp HHT-------TCCCCEEEEEESSSCHHHHHHHHHHHTTTSCCCSEEE-ESSHHHHHHHHHHHHHHHSSCC
T ss_pred HHH-------HcCCCccEEEcCCCChhhHHHHHHHHHhcCCCCCEEE-ECChHHHHHHHHHHHHcCCCCC
Confidence 444 33433222211 11112233455565544 356655 4456668889999999998643
No 85
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.65 E-value=0.0027 Score=64.55 Aligned_cols=190 Identities=10% Similarity=0.018 Sum_probs=117.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++++... ..+..+++-+.++ . |+ ++.+.+++ .++....+....++.+++++||-.......
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g~--~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 71 (272)
T 3o74_A 4 TLGFILPDLENPSYARIAKQLEQGARA---R------GY--QLLIASSD-DQPDSERQLQQLFRARRCDALFVASCLPPE 71 (272)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHH---T------TC--EEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCCCCSS
T ss_pred EEEEEeCCCcChhHHHHHHHHHHHHHH---C------CC--EEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 5899999755 3344555544443 2 33 44455533 677777777788888888888743322111
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---chhHHHHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---NLVYLQQVLE 154 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~~~~~~~~~~ 154 (821)
......+...++|+|........ . .+-.+..++...++.+++.+...|.++++++..... ...+.+.+.+
T Consensus 72 ~~~~~~~~~~~iPvV~~~~~~~~----~---~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (272)
T 3o74_A 72 DDSYRELQDKGLPVIAIDRRLDP----A---HFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDE 144 (272)
T ss_dssp CCHHHHHHHTTCCEEEESSCCCT----T---TCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEccCCCc----c---ccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHH
Confidence 22334566679999988544331 1 133466788888888889999999999999987653 2344555555
Q ss_pred hcCCCCCcCCCCCCeEEEEEcC-CCCCChHHHHHHhhcC---CCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 155 NAHDDDKEIRPGRPSVTIRQLP-PDTDDYRPLLKEIKNS---SESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v~~~~~~-~~~~d~~~~l~~lk~~---~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
... ..|..+...... .+..+....++++.+. .++.|+ +.+...+..+++++++.|+
T Consensus 145 ~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~ 204 (272)
T 3o74_A 145 ALQ-------GYTGEVRRYQGEAFSRECGQRLMQQLIDDLGGLPDALV-TTSYVLLQGVFDTLQARPV 204 (272)
T ss_dssp HTT-------TCCSEEEEEEESSSSHHHHHHHHHHHHHHHTSCCSEEE-ESSHHHHHHHHHHHHTSCG
T ss_pred HHH-------HcCCChheeecCCCCHHHHHHHHHHHHhcCCCCCcEEE-EeCchHHHHHHHHHHHcCC
Confidence 555 445555433221 2222333445554433 366665 4566778889999999998
No 86
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=97.62 E-value=0.0025 Score=65.45 Aligned_cols=188 Identities=9% Similarity=0.001 Sum_probs=113.9
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++.+... ..+..+++-+.++ . |+++ .+.+++ .++....+....++.++|++||........
T Consensus 10 ~Igvi~~~~~~~~~~~~~~gi~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 77 (285)
T 3c3k_A 10 MLLVMVSNIANPFCAAVVKGIEKTAEK---N------GYRI--LLCNTE-SDLARSRSCLTLLSGKMVDGVITMDALSEL 77 (285)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH---T------TCEE--EEEECT-TCHHHHHHHTHHHHTTCCSEEEECCCGGGH
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHH---c------CCEE--EEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCCCCCh
Confidence 6899998644 3444555554443 2 3344 445533 567666666777777799998864433223
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~~ 151 (821)
..+..+ . .++|+|........ +.+..+..++...+..+++.+...|.++++++..... -...+.+
T Consensus 78 ~~~~~l-~-~~iPvV~~~~~~~~-------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 148 (285)
T 3c3k_A 78 PELQNI-I-GAFPWVQCAEYDPL-------STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLN 148 (285)
T ss_dssp HHHHHH-H-TTSSEEEESSCCTT-------SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHHHH-h-cCCCEEEEccccCC-------CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHH
Confidence 334444 4 89999988543221 1233466777777788888888889999999987643 1344555
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHH--hhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKE--IKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~--lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+ ..+....-..+..+....+++ +.+. .+++|+. .+...+..+++++++.|+.-+
T Consensus 149 ~l~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP 211 (285)
T 3c3k_A 149 RLKFHG----------LDYSRISYAENLDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLSIP 211 (285)
T ss_dssp HHHHHT----------CCCCEEEECSSSSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcC----------CCceEeecCCChHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCCCC
Confidence 666554 211111111122334456666 5554 4666664 556677889999999998644
No 87
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=97.59 E-value=0.0032 Score=64.74 Aligned_cols=191 Identities=10% Similarity=-0.003 Sum_probs=113.1
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc-ch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI-EN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s-~~ 76 (821)
+||++.+... ..+..+++.+.++ . |+ ++.+.+++ .++....+....++.++|++||..... ..
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~---~------g~--~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 71 (290)
T 2fn9_A 4 KMAIVISTLNNPWFVVLAETAKQRAEQ---L------GY--EATIFDSQ-NDTAKESAHFDAIIAAGYDAIIFNPTDADG 71 (290)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHH---T------TC--EEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCSCTTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHH---c------CC--EEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEecCChHH
Confidence 6999998654 4455566655554 2 23 34456633 677777777888888899988864332 32
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEE-EecChhhHHHHHHHHHHhC------CCCE--EEEEEecCC---
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVN-VYPESHLISKGISVIINDM------DWDT--FTIIYETHD--- 144 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r-~~p~~~~~~~al~~~~~~~------~w~~--v~ii~~~~~--- 144 (821)
.......+...++|+|........ . ++... +.+++...++.+++.+... |.++ ++++.....
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~---~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~ 145 (290)
T 2fn9_A 72 SIANVKRAKEAGIPVFCVDRGINA---R---GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQP 145 (290)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSC---S---SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHH
T ss_pred HHHHHHHHHHCCCeEEEEecCCCC---C---CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCch
Confidence 222334456689999988543221 1 11223 6677777788888888776 8899 666664432
Q ss_pred chhHHHHHHHhcCCCCCcCCCC-CCeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 145 NLVYLQQVLENAHDDDKEIRPG-RPSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
...+.+.+.+... .. |+.+....... +..+....++++.+. .+++|+. .+...+..+++++++.|+
T Consensus 146 ~~~R~~gf~~~l~-------~~~g~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 146 TWDRSNGFHSVVD-------QYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHHHT-------TSTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH-------hCCCCEEEEeccCCCCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 2334444544444 33 44443222111 112233455555443 4666664 556677889999999998
No 88
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=97.59 E-value=0.0029 Score=65.57 Aligned_cols=192 Identities=11% Similarity=0.073 Sum_probs=115.5
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
+||++.+..+ ..+..+++.+.++. | +++.+.+....++....+....++.++|++|| .|..+..
T Consensus 6 ~Ig~i~~~~~~~~~~~~~~g~~~~~~~~---------g--~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~ 74 (303)
T 3d02_A 6 TVVNISKVDGMPWFNRMGEGVVQAGKEF---------N--LNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANV 74 (303)
T ss_dssp EEEEECSCSSCHHHHHHHHHHHHHHHHT---------T--EEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHH
T ss_pred EEEEEeccCCChHHHHHHHHHHHHHHHc---------C--CEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHH
Confidence 6999998655 44566666666552 2 34443332346787777788888888999876 5554433
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-CCCC-EEEEEEecCC------chhH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-MDWD-TFTIIYETHD------NLVY 148 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~~w~-~v~ii~~~~~------~~~~ 148 (821)
.......+...++|+|.....+. . .+.+.....++...+..+++++.. .|.+ +++++..... ....
T Consensus 75 ~~~~~~~~~~~~ipvV~~~~~~~----~--~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 75 LEPVFKKARDAGIVVLTNESPGQ----P--SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHTTCEEEEESCTTC----T--TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEEecCCC----C--CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 33344556678999998854311 1 123445677777778888888877 8887 9998875432 1334
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHHHHhhcCCC--cEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLLKEIKNSSE--SHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l~~lk~~~~--~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+++.+++.+ . +..+....+... ..+....++++.+..+ +.|+ +.....+..+++++++.|+.
T Consensus 149 f~~~l~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 214 (303)
T 3d02_A 149 LVKYQKEHY-------P-DMHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVV-SFGSNGPIGAGRAVKEKRAK 214 (303)
T ss_dssp HHHHHHHHC-------T-TEEESSSCBSCTTCHHHHHHHHHHHHHHCTTEEEEE-ESSTTHHHHHHHHHHHTTCT
T ss_pred HHHHHHhhC-------C-CCEEEEeecCCCCCHHHHHHHHHHHHHhCCCCCEEE-EeCCcchhHHHHHHHhcCCC
Confidence 455555433 1 222211111211 1223445666655544 4444 44556777899999999986
No 89
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=97.57 E-value=0.0039 Score=64.63 Aligned_cols=197 Identities=11% Similarity=0.025 Sum_probs=119.6
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
+||++.+..+ ..+..+++-+.++. |+++.+. .+ ...++....+....++.+++++|| .|.....
T Consensus 6 ~I~~i~~~~~~~~~~~~~~gi~~~a~~~---------g~~~~~~-~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 6 TYMMITFQSGMDYWKRCLKGFEDAAQAL---------NVTVEYR-GA-AQYDIQEQITVLEQAIAKNPAGIAISAIDPVE 74 (305)
T ss_dssp EEEEEESSTTSTHHHHHHHHHHHHHHHH---------TCEEEEE-EC-SSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT
T ss_pred eEEEEEccCCChHHHHHHHHHHHHHHHc---------CCEEEEe-CC-CcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 6899988766 44556666665553 2344332 34 346887777888888888999887 3444433
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC-----chhHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD-----NLVYL 149 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~-----~~~~~ 149 (821)
.......+...++|+|........ .+.+..+.+++...+..+++.+... |.++++++..... -..++
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf 148 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAPD------SHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGF 148 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTT------SCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEECCCCCC------CceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHH
Confidence 333444566689999988643321 1123456788888888888888887 9999999986543 23444
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEE--cC-CCCCChHHHHHHhhcCCCcE-EEEeCChhHHHHHHHHHHHccccCcceEE
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQ--LP-PDTDDYRPLLKEIKNSSESH-ILLDCSMDKTVTILKQAKEVHLMGDYQNY 225 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~--~~-~~~~d~~~~l~~lk~~~~~~-ivl~~~~~~~~~~l~~a~~~g~~~~~~~~ 225 (821)
.+.+++.+ ..+.... .. .+..+....+.++.+..++. .|++++...+..+++++++.|+. .+...
T Consensus 149 ~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~-~di~v 217 (305)
T 3g1w_A 149 KETLEAEF----------PAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESRA-GEIQI 217 (305)
T ss_dssp HHHHHHHC----------TTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCT-TTSEE
T ss_pred HHHHHhhC----------CCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchhhHHHHHHhcCCC-CCeEE
Confidence 55555543 3333221 11 11222334455554443333 33455567788899999999986 44333
Q ss_pred E
Q psy16206 226 I 226 (821)
Q Consensus 226 i 226 (821)
+
T Consensus 218 i 218 (305)
T 3g1w_A 218 I 218 (305)
T ss_dssp E
T ss_pred E
Confidence 3
No 90
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=97.56 E-value=0.0015 Score=67.52 Aligned_cols=189 Identities=7% Similarity=-0.037 Sum_probs=114.3
Q ss_pred cEEEEeCC--Cc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcc
Q psy16206 2 KIVGIFGP--NE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~--~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~ 75 (821)
+||++.+. .. ..+..+++.+.++ . |+ ++.+.+.+ .++....+....++.++|++||......
T Consensus 21 ~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~---~------g~--~~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~~ 88 (296)
T 3brq_A 21 TLGLVVTNTLYHGIYFSELLFHAARMAEE---K------GR--QLLLADGK-HSAEEERQAIQYLLDLRCDAIMIYPRFL 88 (296)
T ss_dssp EEEEEECGGGCC--CHHHHHHHHHHHHHH---T------TC--EEEEECCT-TSHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred eEEEEeCCcccCCchHHHHHHHHHHHHHH---C------CC--EEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 69999986 22 4556666666554 2 22 34455633 6777777778888888999988644432
Q ss_pred hHHHHHHHhcc-CCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhH
Q psy16206 76 NRNIIESMCQM-FDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVY 148 (821)
Q Consensus 76 ~~~~v~~i~~~-~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~ 148 (821)
....+. .+.. .++|+|....... . +.+..+.+++...+..+++.+...|.++++++..+.. . ...
T Consensus 89 ~~~~~~-~l~~~~~iPvV~~~~~~~----~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~g 160 (296)
T 3brq_A 89 SVDEID-DIIDAHSQPIMVLNRRLR----K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAG 160 (296)
T ss_dssp CHHHHH-HHHHTCSSCEEEESCCCS----S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHH
T ss_pred ChHHHH-HHHhcCCCCEEEEccccC----C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHH
Confidence 333343 3445 7999998854322 1 1233466777777788888888889999999987643 2 333
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+.+++.+ ..+... .+..+ ..+....++++.+. .+++|+. .....+..+++++++.|+.-+
T Consensus 161 f~~~l~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP 227 (296)
T 3brq_A 161 YKDALAQHG----------IALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVP 227 (296)
T ss_dssp HHHHHHTTT----------CCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHcC----------CCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCC
Confidence 444444443 322110 11111 12223455665443 5677664 456667889999999998643
No 91
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=97.56 E-value=0.0041 Score=64.58 Aligned_cols=198 Identities=10% Similarity=0.007 Sum_probs=115.3
Q ss_pred CcEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc-c
Q psy16206 1 MKIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI-E 75 (821)
Q Consensus 1 i~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s-~ 75 (821)
++||++.+..+ ..+..+++-+.++ . |+. +.+.+++ .++....+....++.++|++||-.... .
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~---~------g~~--l~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 70 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEK---R------GIT--LKIADGQ-QKQENQIKAVRSFVAQGVDAIFIAPVVAT 70 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHH---H------TCE--EEEEECT-TCHHHHHHHHHHHHHHTCSEEEECCSSSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHH---c------CCE--EEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 58999999766 3344555544443 2 223 4455633 677776777777887899988854333 2
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCC---CCEEEEEEecCC---chhHH
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMD---WDTFTIIYETHD---NLVYL 149 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~---w~~v~ii~~~~~---~~~~~ 149 (821)
........+...++|+|........ .....++..+..++...+..+++.+...| .++++++..... ...+.
T Consensus 71 ~~~~~~~~~~~~~iPvV~~~~~~~~---~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~ 147 (306)
T 2vk2_A 71 GWEPVLKEAKDAEIPVFLLDRSIDV---KDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRK 147 (306)
T ss_dssp SCHHHHHHHHHTTCCEEEESSCCCC---SCGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHH
T ss_pred hHHHHHHHHHHCCCCEEEecCCCCC---CCccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHH
Confidence 2222334456689999988543221 11112345577777777788888887766 789999986533 23444
Q ss_pred HHHHHhcCCCCCcCCCCCC-eEEEEEcCC-CCCChHHHHHHhhcC-----CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 150 QQVLENAHDDDKEIRPGRP-SVTIRQLPP-DTDDYRPLLKEIKNS-----SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~-~v~~~~~~~-~~~d~~~~l~~lk~~-----~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+.+... ..|. .+....... ...+....++++.+. .+++|+. .+...+..+++++++.|+.-+
T Consensus 148 ~Gf~~al~-------~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP 218 (306)
T 2vk2_A 148 KGFAEAIK-------NAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPG 218 (306)
T ss_dssp HHHHHHTT-------TCTTEEEEEEEECTTCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBT
T ss_pred HHHHHHHh-------hCCCeEEEEeccCCCcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCC
Confidence 55555554 3343 222111111 111223345555432 4566654 456668889999999998643
No 92
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.54 E-value=0.0039 Score=64.19 Aligned_cols=192 Identities=11% Similarity=0.006 Sum_probs=116.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++++... ..+..+++-+.++ . | +++.+.+++ .++....+....++.++|++||-......
T Consensus 10 ~Igvv~~~~~~~~~~~~~~gi~~~a~~---~------g--~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~- 76 (291)
T 3egc_A 10 VVGLIVSDIENVFFAEVASGVESEARH---K------G--YSVLLANTA-EDIVREREAVGQFFERRVDGLILAPSEGE- 76 (291)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH---T------T--CEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCCSSC-
T ss_pred EEEEEECCCcchHHHHHHHHHHHHHHH---C------C--CEEEEEeCC-CCHHHHHHHHHHHHHCCCCEEEEeCCCCC-
Confidence 6899998655 3344555544443 2 2 344555633 67777777777788889998884333322
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~~ 151 (821)
......+...++|+|........ +.+..+..++...+..+++.+...|.++++++..... -...+.+
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~~-------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (291)
T 3egc_A 77 HDYLRTELPKTFPIVAVNRELRI-------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRA 149 (291)
T ss_dssp CHHHHHSSCTTSCEEEESSCCCC-------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHH
T ss_pred hHHHHHhhccCCCEEEEecccCC-------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence 23344567789999988644331 1234567788888888999998899999999987653 2445555
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+. ......+....+ +..+....++++.+. .++.|+ +.+...+..+++++++.|+.-+
T Consensus 150 ~l~~~g~-----~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP 213 (291)
T 3egc_A 150 AMSAAGL-----PVRQEWIAAGGV--RADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYG 213 (291)
T ss_dssp HHHHTTC-----CCCGGGEEC--------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBT
T ss_pred HHHHcCC-----CCCHHHeEeCCC--ChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCC
Confidence 6665540 000001111111 123344455555543 456665 4666778889999999998644
No 93
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=97.53 E-value=0.0046 Score=63.52 Aligned_cols=194 Identities=10% Similarity=0.025 Sum_probs=113.1
Q ss_pred cEEEEeCCC---c---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc-
Q psy16206 2 KIVGIFGPN---E---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI- 74 (821)
Q Consensus 2 ~IG~i~~~~---~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s- 74 (821)
+||++.+.. . ..+..+++.+.++. |+++.+...+ +..++....+....++.++|++||.....
T Consensus 7 ~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~---------g~~~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 76 (289)
T 3brs_A 7 YMICIPKVLDDSSDFWSVLVEGAQMAAKEY---------EIKLEFMAPE-KEEDYLVQNELIEEAIKRKPDVILLAAADY 76 (289)
T ss_dssp EEEEECSCCCSSSHHHHHHHHHHHHHHHHH---------TCEEEECCCS-STTCHHHHHHHHHHHHHTCCSEEEECCSCT
T ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHHHc---------CCEEEEecCC-CCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 689998853 3 34455555555543 2344433222 13677777777888888899998854333
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC-C-CCEEEEEEecCC---chhHH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM-D-WDTFTIIYETHD---NLVYL 149 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~-~-w~~v~ii~~~~~---~~~~~ 149 (821)
.........+...++|+|........ .+.+..+.+++...++.+++.+... | .++++++..... ...+.
T Consensus 77 ~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~ 150 (289)
T 3brs_A 77 EKTYDAAKEIKDAGIKLIVIDSGMKQ------DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDRE 150 (289)
T ss_dssp TTTHHHHTTTGGGTCEEEEESSCCSS------CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHH
T ss_pred HHhHHHHHHHHHCCCcEEEECCCCCC------CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHH
Confidence 32223334456689999988543221 1234567788888888888888774 6 999999986533 22333
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEE-EcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIR-QLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.+.+... ..|..+... ..+....+....++++.+.. +++|+ +.+...+..+++++++.|+.
T Consensus 151 ~gf~~~l~-------~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 151 EGLKIGLS-------DDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp HHHHHHHG-------GGGGGEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHH-------hCCCcEEeeecCCCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC
Confidence 33333332 223333222 11111223344556655444 45444 45566788899999999986
No 94
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=97.52 E-value=0.0012 Score=68.06 Aligned_cols=187 Identities=11% Similarity=0.025 Sum_probs=110.6
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
+||++.+.+. ..+..+++.+.+ +. |+++ .+.+++ .++....+....++.++|++||.........
T Consensus 10 ~Igvi~~~~~~~~~~~~~gi~~~~~---~~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 77 (288)
T 2qu7_A 10 IIAFIVPDQNPFFTEVLTEISHECQ---KH------HLHV--AVASSE-ENEDKQQDLIETFVSQNVSAIILVPVKSKFQ 77 (288)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHHG---GG------TCEE--EEEECT-TCHHHHHHHHHHHHHTTEEEEEECCSSSCCC
T ss_pred EEEEEECCCCchHHHHHHHHHHHHH---HC------CCEE--EEEeCC-CCHHHHHHHHHHHHHcCccEEEEecCCCChH
Confidence 5899998722 333444444433 22 3344 445633 6777777778888888999998654432222
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHHH
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQV 152 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~~ 152 (821)
.+..+ .++|+|........ +.+..+.+++...++.+++.+...|.++++++..... . ...+.+.
T Consensus 78 ~~~~l---~~iPvV~~~~~~~~-------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~ 147 (288)
T 2qu7_A 78 MKREW---LKIPIMTLDRELES-------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKA 147 (288)
T ss_dssp CCGGG---GGSCEEEESCCCSS-------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred HHHHh---cCCCEEEEecccCC-------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 23333 78999988543221 1244567788888888889988889999999986532 1 3344455
Q ss_pred HHhcCCCCCcCCCCCCeEE---EE--EcCC----CCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 153 LENAHDDDKEIRPGRPSVT---IR--QLPP----DTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 153 ~~~~~~~~~~~~~~g~~v~---~~--~~~~----~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+++.+ ..+. .. .-+. +..+-...++++.+..+++|+. +....+..+++++++.|+.-+
T Consensus 148 l~~~g----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP 214 (288)
T 2qu7_A 148 ISEFD----------LNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEKEIK 214 (288)
T ss_dssp HHHTT----------CCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSCCBT
T ss_pred HHHcC----------CCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCCCCC
Confidence 55544 2221 11 1011 1111223444444447777764 446667789999999998643
No 95
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=97.51 E-value=0.0025 Score=65.50 Aligned_cols=190 Identities=14% Similarity=0.054 Sum_probs=114.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++.+... ..+..+++.+.++. |+++ .+.+.+ .++....+....++.++|++||........
T Consensus 9 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~---------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 76 (289)
T 1dbq_A 9 SIGLLATSSEAAYFAEIIEAVEKNCFQK---------GYTL--ILGNAW-NNLEKQRAYLSMMAQKRVDGLLVMCSEYPE 76 (289)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHH---------TCEE--EEEECT-TCHHHHHHHHHHHHHTTCSEEEEECSCCCH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHc---------CCeE--EEEcCC-CChHHHHHHHHHHHhCCCCEEEEEeccCCH
Confidence 6999998644 44556666666542 2334 345533 677777777788888899988853332222
Q ss_pred HHHHHHhcc-CCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHH
Q psy16206 78 NIIESMCQM-FDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~-~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~ 150 (821)
. +...... .++|+|........ .++...+.+++...+..+++++...|.++++++..+.. -...+.
T Consensus 77 ~-~~~~l~~~~~iPvV~~~~~~~~------~~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~ 149 (289)
T 1dbq_A 77 P-LLAMLEEYRHIPMVVMDWGEAK------ADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 149 (289)
T ss_dssp H-HHHHHHHTTTSCEEEEECSSCC------SSSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHH
T ss_pred H-HHHHHHhccCCCEEEEccCCCc------cCcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHH
Confidence 2 2333333 78999988543221 12234567788788888889888889999999976532 244455
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ ..+... .+..+ ..+....++++.+. .+++|+. .+...+..+++++++.|+.-+
T Consensus 150 ~~l~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP 214 (289)
T 1dbq_A 150 KAMEEAM----------IKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVP 214 (289)
T ss_dssp HHHHHTT----------CCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHCC----------CCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCC
Confidence 5555554 222111 11111 11233455565543 5666664 456777889999999998643
No 96
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=0.0072 Score=63.37 Aligned_cols=193 Identities=7% Similarity=-0.063 Sum_probs=111.2
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcch-H
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIEN-R 77 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~-~ 77 (821)
+||++.+.+. ..+..+++.+. .+. .|+ ++.+.+.+ .++....+....++.++|++||....... .
T Consensus 8 ~Igvi~~~~~~~~~~~~~gi~~~a---~~~-----~g~--~l~i~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 76 (325)
T 2x7x_A 8 RIGVAQCSDDSWRHKMNDEILREA---MFY-----NGV--SVEIRSAG-DDNSKQAEDVHYFMDEGVDLLIISANEAAPM 76 (325)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHH---TTS-----SSC--EEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCSSHHHH
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH---HHc-----CCc--EEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 6999998733 22333443333 222 133 44556633 67777777788888889999886544432 2
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC---chhHHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD---NLVYLQQV 152 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~---~~~~~~~~ 152 (821)
......+...++|+|........ .+.+..+.+++...+..+++.+... |.++++++..... ...+.+.+
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~~------~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf 150 (325)
T 2x7x_A 77 TPIVEEAYQKGIPVILVDRKILS------DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGF 150 (325)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSS------SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEeCCCCCC------cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHH
Confidence 23334455689999988543221 1223456677777788888887764 9999999986533 22333334
Q ss_pred HHhcCCCCCcCCCC-CCeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 153 LENAHDDDKEIRPG-RPSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 153 ~~~~~~~~~~~~~~-g~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
.+... .. |+.+....... ...+....++++.+. .+++|+. .+...+..+++++++.|++
T Consensus 151 ~~al~-------~~pg~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~-~nd~~A~g~~~al~~~Gip 213 (325)
T 2x7x_A 151 MAAIS-------KFPDIKLIDKADAAWERGPAEIEMDSMLRRHPKIDAVYA-HNDRIAPGAYQAAKMAGRE 213 (325)
T ss_dssp HHHHH-------TCTEEEEEEEEECTTSHHHHHHHHHHHHHHCSCCCEEEE-SSTTHHHHHHHHHHHTTCT
T ss_pred HHHHH-------hCCCCEEEeeecCCCCHHHHHHHHHHHHHhCCCCCEEEE-CCCchHHHHHHHHHHcCCC
Confidence 44333 22 44443221111 112223445555443 4666664 4556677889999999973
No 97
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=97.47 E-value=0.014 Score=60.50 Aligned_cols=184 Identities=12% Similarity=0.053 Sum_probs=110.4
Q ss_pred CcEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 1 MKIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 1 i~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+|||++--.+. ..+.+|++ +.+++.|. ..|..+++.+.| ..+|+....+.+.+|+.+++++|++-.+ .++
T Consensus 9 ~~igi~q~~~hp~ld~~~~G~~---~~L~~~G~--~~g~nv~~~~~~-a~gd~~~~~~~~~~l~~~~~DlIiai~t-~aa 81 (302)
T 3lkv_A 9 AKVAVSQIVEHPALDATRQGLL---DGLKAKGY--EEGKNLEFDYKT-AQGNPAIAVQIARQFVGENPDVLVGIAT-PTA 81 (302)
T ss_dssp EEEEEEESCCCHHHHHHHHHHH---HHHHHTTC--CBTTTEEEEEEE-CTTCHHHHHHHHHHHHTTCCSEEEEESH-HHH
T ss_pred ceEEEEEeecChhHHHHHHHHH---HHHHhhCc--ccCCcEEEEEEe-CCCCHHHHHHHHHHHHhcCCcEEEEcCC-HHH
Confidence 47898865554 44555664 45566664 556789999999 5599999999999999999999996433 334
Q ss_pred HHHHHHhccCCCceeeeccC-CCC--C--CCCCCCccEEEEecChhhHHHHHHHHHHh-C-CCCEEEEEEecCC-chhHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWD-PNK--Y--FIPTNGVHGVNVYPESHLISKGISVIIND-M-DWDTFTIIYETHD-NLVYL 149 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~-~~~--~--~~~~~~~~~~r~~p~~~~~~~al~~~~~~-~-~w~~v~ii~~~~~-~~~~~ 149 (821)
.++.. ...++|+|..+.+ |.. + +.....+++..+.-.. -.+...+++++ + +.++++++|+..+ .....
T Consensus 82 ~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~~~~--~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~ 157 (302)
T 3lkv_A 82 QALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLS--PVEQHVELIKEILPNVKSIGVVYNPGEANAVSL 157 (302)
T ss_dssp HHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCC--CHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHH
T ss_pred HHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEECCc--CHHHHHHHHHHhCCCCCEEEEEeCCCcccHHHH
Confidence 44433 3457999876544 221 1 1112234444433221 12334455554 3 7899999998775 22222
Q ss_pred HHHHHh-cCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChh
Q psy16206 150 QQVLEN-AHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMD 204 (821)
Q Consensus 150 ~~~~~~-~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~ 204 (821)
.+.+++ .. ..|+.+....... ..+....++.+. .+.+++++.....
T Consensus 158 ~~~~~~~~~-------~~g~~~v~~~~~~-~~~~~~~~~~l~-~~~d~i~~~~d~~ 204 (302)
T 3lkv_A 158 MELLKLSAA-------KHGIKLVEATALK-SADVQSATQAIA-EKSDVIYALIDNT 204 (302)
T ss_dssp HHHHHHHHH-------HTTCEEEEEECSS-GGGHHHHHHHHH-TTCSEEEECSCHH
T ss_pred HHHHHHHHH-------HcCCEEEEEecCC-hHHHHHHHHhcc-CCeeEEEEeCCcc
Confidence 222222 22 3356665554433 456777776664 4678888776653
No 98
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=97.46 E-value=0.0048 Score=64.92 Aligned_cols=197 Identities=6% Similarity=-0.035 Sum_probs=116.6
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcC--eEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEG--IAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~--V~aiiGp~~s~ 75 (821)
+||++.+... ..+..+++-+.++. |+ ++.+.+++ .++....+....++.++ |++||......
T Consensus 7 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~---------g~--~l~~~~~~-~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~ 74 (332)
T 2rjo_A 7 TLACSFRSLTNPYYTAFNKGAQSFAKSV---------GL--PYVPLTTE-GSSEKGIADIRALLQKTGGNLVLNVDPNDS 74 (332)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHH---------TC--CEEEEECT-TCHHHHHHHHHHHHHHTTTCEEEEECCSSH
T ss_pred EEEEEecCCCcHHHHHHHHHHHHHHHHc---------CC--EEEEecCC-CCHHHHHHHHHHHHHCCCCCCEEEEeCCCH
Confidence 6999998544 34455555555442 22 34455633 67777777788888888 99988644333
Q ss_pred -hHHHHHHHhccCCCceeeeccCCCCCCCCCC-C-ccEEEEecChhhHHHHHHHHHHh--CCCCEEEEEEecCC---chh
Q psy16206 76 -NRNIIESMCQMFDIPHVEAFWDPNKYFIPTN-G-VHGVNVYPESHLISKGISVIIND--MDWDTFTIIYETHD---NLV 147 (821)
Q Consensus 76 -~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~-~-~~~~r~~p~~~~~~~al~~~~~~--~~w~~v~ii~~~~~---~~~ 147 (821)
........+...++|+|........ ..... . +.+..+.+++...++.+++.+.. .|.++++++..... ...
T Consensus 75 ~~~~~~~~~~~~~~iPvV~~~~~~~~-~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~ 153 (332)
T 2rjo_A 75 ADARVIVEACSKAGAYVTTIWNKPKD-LHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIE 153 (332)
T ss_dssp HHHHHHHHHHHHHTCEEEEESCCCTT-CCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCc-ccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHH
Confidence 2223334455679999988543221 00000 1 34566788888888888888877 79999999986532 233
Q ss_pred HHHHHHHhcCCCCCcCCCC-CCeEEEEEc-CCCCCChHHHHHHhhcC---CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 148 YLQQVLENAHDDDKEIRPG-RPSVTIRQL-PPDTDDYRPLLKEIKNS---SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~-g~~v~~~~~-~~~~~d~~~~l~~lk~~---~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.+.+.+... .. |+.+..... ..+..+....++++.+. .+++|+ +.....+..+++++++.|+.
T Consensus 154 R~~Gf~~al~-------~~pgi~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 154 RKAGLDAALK-------KFPGIQLLDFQVADWNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHH-------TCTTEEEEEEEECTTCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHH-------hCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 3333444333 23 444432221 11122234455555544 345554 45566788899999999986
No 99
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.43 E-value=0.01 Score=60.73 Aligned_cols=191 Identities=9% Similarity=0.011 Sum_probs=111.1
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
+||++.+... ..+..+++.+.++. |+ ++.+.+++ .++....+....++.++|++||- |.....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~---------g~--~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 70 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL---------GY--KIIVEDSQ-NDSSKELSNVEDLIQQKVDVLLINPVDSDA 70 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH---------TC--EEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCSSTTT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc---------Cc--EEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEeCCchhh
Confidence 6899998655 44555666555542 22 34455633 67777677778888889998773 444333
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC-C-CCEEEEEEecCC---chhHHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM-D-WDTFTIIYETHD---NLVYLQQ 151 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~-~-w~~v~ii~~~~~---~~~~~~~ 151 (821)
.......+...++|+|........ .+....+..++...++.+++.+... | .++++++..... ...+.+.
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~G 144 (283)
T 2ioy_A 71 VVTAIKEANSKNIPVITIDRSANG------GDVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKG 144 (283)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSS------SCCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEecCCCCC------cceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHH
Confidence 222334456789999988533221 1122345667766777778877665 5 899999986532 2334444
Q ss_pred HHHhcCCCCCcCCCC-CCeEEEEEc-CCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 152 VLENAHDDDKEIRPG-RPSVTIRQL-PPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~-g~~v~~~~~-~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
+.+.+. .. |+.+..... .....+-...++++.+. .++.| ++++...+..+++++++.|+
T Consensus 145 f~~al~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 145 FDEAIA-------KYPDIKIVAKQAADFDRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAANR 207 (283)
T ss_dssp HHHHHT-------TCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHH-------hCCCCEEEeeccCCCCHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHCCC
Confidence 444444 33 444332211 11112233445555444 34544 44556678889999999998
No 100
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.41 E-value=0.0043 Score=65.54 Aligned_cols=191 Identities=8% Similarity=-0.009 Sum_probs=117.3
Q ss_pred cEEEEeCC--Cc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcc
Q psy16206 2 KIVGIFGP--NE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~--~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~ 75 (821)
+||++++. -. ..+..+++-+.++ . |+ ++.+.+++ .++....+....++.++|++||-.....
T Consensus 63 ~Igvi~~~~~~~~~~~~~~~~gi~~~a~~---~------g~--~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 130 (338)
T 3dbi_A 63 TLGLVVTNTLYHGIYFSELLFHAARMAEE---K------GR--QLLLADGK-HSAEEERQAIQYLLDLRCDAIMIYPRFL 130 (338)
T ss_dssp EEEEEECTTTTSTTHHHHHHHHHHHHHHH---T------TC--EEEEEECT-TSHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred EEEEEecCCcccChhHHHHHHHHHHHHHH---C------CC--EEEEEeCC-CChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 58999986 33 3344455544433 2 23 44555533 6777777777788888999988544333
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHH
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYL 149 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~ 149 (821)
....+...+...++|+|........ .. +..+..++..-+..+++.+...|.++++++..... -...+
T Consensus 131 ~~~~~~~~~~~~~iPvV~~~~~~~~----~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 203 (338)
T 3dbi_A 131 SVDEIDDIIDAHSQPIMVLNRRLRK----NS---SHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGY 203 (338)
T ss_dssp CHHHHHHHHHHCSSCEEEESSCCSS----SG---GGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCCCEEEEcCCCCC----CC---CCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHH
Confidence 3455667788889999988544321 11 22366777777888888888899999999976533 24445
Q ss_pred HHHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
.+.+++.+ ..+. ...-..+..+-...++++.+. .++.|+ +.+...+..+++++++.|+.-+.
T Consensus 204 ~~al~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~ 270 (338)
T 3dbi_A 204 KDALAQHG----------IALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPE 270 (338)
T ss_dssp HHHHHHTT----------CCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHCC----------CCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 55555554 2221 111111112223445555433 466665 45567788899999999987543
No 101
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=97.40 E-value=0.012 Score=60.82 Aligned_cols=195 Identities=12% Similarity=0.100 Sum_probs=114.1
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
+||++...+. .++.+|++-+. ++.| . .|..+.+.+.|++ +++.+..+....|.+++|++||..... ...
T Consensus 4 ~Igvi~~~~~p~~~~i~~gi~~~l---~~~g--y-~g~~v~l~~~~~~-~~~~~~~~~~~~l~~~~vDgII~~~~~-~~~ 75 (295)
T 3lft_A 4 KIGVLQFVSHPSLDLIYKGIQDGL---AEEG--Y-KDDQVKIDFMNSE-GDQSKVATMSKQLVANGNDLVVGIATP-AAQ 75 (295)
T ss_dssp EEEEEECSCCHHHHHHHHHHHHHH---HHTT--C-CGGGEEEEEEECT-TCHHHHHHHHHHHTTSSCSEEEEESHH-HHH
T ss_pred EEEEEEccCChhHHHHHHHHHHHH---HHcC--C-CCCceEEEEecCC-CCHHHHHHHHHHHHhcCCCEEEECCcH-HHH
Confidence 6898855555 44445555444 4443 1 3457888888855 888888888888888899999865432 222
Q ss_pred HHHHHhccCCCceeeeccC-CCC--CCC--CCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC--chhHH
Q psy16206 79 IIESMCQMFDIPHVEAFWD-PNK--YFI--PTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD--NLVYL 149 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~-~~~--~~~--~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~--~~~~~ 149 (821)
.+.. ...++|+|..... +.. ... ......+.... +..-+...++++... |.+++++++.... ...++
T Consensus 76 ~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 2222 2478999987532 211 000 11122333333 222245566767665 8999999998764 22233
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
+.+.+.+. ..|+.+....... ..+....++++.. ++++|++... ..+...++++.+.+.
T Consensus 152 ~g~~~al~-------~~gi~~~~~~~~~-~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAE-------KAGLTVETFAVPS-TNEIASTVTVMTS-KVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHH-------HTTCEEEEEEESS-GGGHHHHHHHHTT-TCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHH-------HcCCEEEEEecCC-HHHHHHHHHHHHh-cCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 33333333 3356655443322 4567778888763 7888877544 445556777777775
No 102
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=97.40 E-value=0.0065 Score=62.49 Aligned_cols=189 Identities=12% Similarity=0.059 Sum_probs=113.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++.+... ..+..+++-+.++ . |+++ .+.+++ .++....+....++.++|++||-.......
T Consensus 18 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 85 (289)
T 2fep_A 18 TVGVIIPDISSIFYSELARGIEDIATM---Y------KYNI--ILSNSD-QNMEKELHLLNTMLGKQVDGIVFMGGNITD 85 (289)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH---T------TCEE--EEEECT-TCHHHHHHHHHHHHHTTCSEEEECCSCCCH
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHHH---c------CCEE--EEEeCC-CCHHHHHHHHHHHHhCCCCEEEEecCCCCH
Confidence 6899998644 3445555555443 2 3344 445533 677666677777888899988853332223
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecC-C------chhHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETH-D------NLVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~-~------~~~~~~ 150 (821)
..+.. +...++|+|........ +.+..+..++...+..+++.+...|.++++++.... . -...+.
T Consensus 86 ~~~~~-l~~~~iPvV~~~~~~~~-------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~ 157 (289)
T 2fep_A 86 EHVAE-FKRSPVPIVLAASVEEQ-------EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYK 157 (289)
T ss_dssp HHHHH-HHHSSSCEEEESCCCTT-------CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHH
T ss_pred HHHHH-HHhcCCCEEEEccccCC-------CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHHH
Confidence 33333 44689999988543221 112346677777888888888888999999998764 3 244555
Q ss_pred HHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ ..+. ...-..+..+-...++++.+. .+++|+ +++...+..+++++++.|+.-+
T Consensus 158 ~al~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP 222 (289)
T 2fep_A 158 RALEEAN----------LPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGIIHAAQDQGLSIP 222 (289)
T ss_dssp HHHHHTT----------CCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcC----------CCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCC
Confidence 5555554 2211 111111112233455665554 456665 4556678889999999998643
No 103
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.38 E-value=0.0078 Score=61.21 Aligned_cols=189 Identities=11% Similarity=0.021 Sum_probs=111.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++.+... ..+..+++-+.++ . |+++ .+.+++ .++....+....++.++|++||-.......
T Consensus 5 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 72 (275)
T 3d8u_A 5 SIALIIPSLFEKACAHFLPSFQQALNK---A------GYQL--LLGYSD-YSIEQEEKLLSTFLESRPAGVVLFGSEHSQ 72 (275)
T ss_dssp EEEEEESCSSCHHHHHHHHHHHHHHHH---T------SCEE--CCEECT-TCHHHHHHHHHHHHTSCCCCEEEESSCCCH
T ss_pred EEEEEeCCCccccHHHHHHHHHHHHHH---C------CCEE--EEEcCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCCH
Confidence 6899998644 3444555554443 2 3343 334533 567666667777887788877643222222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~~ 151 (821)
..+ ..+...++|+|....... . +.+..+..++...+..+++.+...|.++++++..+.. -...+.+
T Consensus 73 ~~~-~~l~~~~iPvV~~~~~~~----~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (275)
T 3d8u_A 73 RTH-QLLEASNTPVLEIAELSS----K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQS 144 (275)
T ss_dssp HHH-HHHHHHTCCEEEESSSCS----S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHH
T ss_pred HHH-HHHHhCCCCEEEEeeccC----C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHH
Confidence 333 344567999998853322 1 2234577777777888888888889999999987543 1344455
Q ss_pred HHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+ ..+... .+..+ ..+....++++.+. .+++|+ +.+...+..+++++++.|+.-+
T Consensus 145 ~l~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP 208 (275)
T 3d8u_A 145 AMIENY----------LTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVP 208 (275)
T ss_dssp HHHHTT----------CCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcC----------CCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCC
Confidence 555544 222111 11111 12223445555544 466665 4556678889999999998644
No 104
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=97.37 E-value=0.002 Score=66.81 Aligned_cols=192 Identities=9% Similarity=0.005 Sum_probs=118.9
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCC--ChhHHHHHHHHHhhcCeEEEE-cCCCc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENY--DSLHTAKLMCNATSEGIAAIF-GPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~--~~~~a~~~a~~li~~~V~aii-Gp~~s 74 (821)
+||++++... ..+..+++-+.++. | +++.+.+.+ . ++....+....++.++|++|| .|...
T Consensus 7 ~Igvi~~~~~~~~~~~~~~g~~~~a~~~---------g--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 74 (304)
T 3o1i_D 7 KICAIYPHLKDSYWLSVNYGMVSEAEKQ---------G--VNLRVLEAG-GYPNKSRQEQQLALCTQWGANAIILGTVDP 74 (304)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHHH---------T--CEEEEEECS-STTCHHHHHHHHHHHHHHTCSEEEECCSST
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHHc---------C--CeEEEEcCC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 6999998655 44455555555442 2 345555533 4 777777888888888998887 44444
Q ss_pred ch-HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCC-----CCEEEEEEecCC---c
Q psy16206 75 EN-RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMD-----WDTFTIIYETHD---N 145 (821)
Q Consensus 75 ~~-~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~-----w~~v~ii~~~~~---~ 145 (821)
.. ...+. .+. .++|+|........ ......+....+.+++...+..+++.+...| .++++++..... .
T Consensus 75 ~~~~~~~~-~~~-~~iPvV~~~~~~~~-~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~ 151 (304)
T 3o1i_D 75 HAYEHNLK-SWV-GNTPVFATVNQLDL-DEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGT 151 (304)
T ss_dssp TSSTTTHH-HHT-TTSCEEECSSCCCC-CTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----
T ss_pred hHHHHHHH-HHc-CCCCEEEecCCCcc-cccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchH
Confidence 32 23333 345 89999998443321 1122345566778888888888999998888 889999976532 3
Q ss_pred hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCC---hHHHHHHhh-cCCCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 146 LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDD---YRPLLKEIK-NSSESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d---~~~~l~~lk-~~~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
..+.+.+.+... ..|+.+.... .. ..+ ....++++. ...+++ | ++....+..+++++++.|+.
T Consensus 152 ~~R~~gf~~~l~-------~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 152 KPVTTGFYEAIK-------NSDIHIVDSF-WA-DNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp CHHHHHHHHTTT-------TBTEEEEECC-CC-CSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHHHHh-------cCCCEEEEee-cC-CCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 445566666665 4455443322 11 222 223344433 235777 4 44667788899999999985
No 105
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=97.36 E-value=0.005 Score=63.28 Aligned_cols=188 Identities=9% Similarity=-0.072 Sum_probs=116.9
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
+||++.+... ..+..+++-+.++ . | +++.+.+.+ .++....+....++.++|++|| .|..+..
T Consensus 7 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~---~------g--~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 74 (291)
T 3l49_A 7 TIGITAIGTDHDWDLKAYQAQIAEIER---L------G--GTAIALDAG-RNDQTQVSQIQTLIAQKPDAIIEQLGNLDV 74 (291)
T ss_dssp EEEEEESCCSSHHHHHHHHHHHHHHHH---T------T--CEEEEEECT-TCHHHHHHHHHHHHHHCCSEEEEESSCHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHH---c------C--CEEEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 6999999655 3344555555444 2 2 345555633 6777777788888888999988 5555444
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh--CCCCEEEEEEecCC---c---hhH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND--MDWDTFTIIYETHD---N---LVY 148 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~--~~w~~v~ii~~~~~---~---~~~ 148 (821)
.......+...++|+|....... +.+..+..++...+..+++.+.. .|.++++++..... . ...
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~--------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 75 LNPWLQKINDAGIPLFTVDTATP--------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHHTTCCEEEESCCCT--------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred hHHHHHHHHHCCCcEEEecCCCC--------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 45555667778999998854322 12345677887888888888888 89999999975433 2 333
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEEE-cCCCC---CChHHHHHHhhcC-----CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIRQ-LPPDT---DDYRPLLKEIKNS-----SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~~---~d~~~~l~~lk~~-----~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.+.+++.+ |+.+.... ..... .+....++++.+. .+++|+ +.+...+..+++++++.|+.
T Consensus 147 f~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 147 MKYVLEAFP---------DVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp HHHHHHTCT---------TEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCC---------CCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHHHcCCC
Confidence 444444332 33322111 11111 1223345555444 356654 55677788899999999986
No 106
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=97.35 E-value=0.012 Score=60.96 Aligned_cols=193 Identities=10% Similarity=0.008 Sum_probs=113.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCC-cch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQS-IEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~-s~~ 76 (821)
+||++.+... ..+..+++.+.++ . |+ +++.+.+++ .++....+....++.++|++||-... ...
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g~-~~~~~~~~~-~~~~~~~~~~~~~~~~~vdgiii~~~~~~~ 72 (309)
T 2fvy_A 4 RIGVTIYKYDDNFMSVVRKAIEQDAKA---A------PD-VQLLMNDSQ-NDQSKQNDQIDVLLAKGVKALAINLVDPAA 72 (309)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHT---C------TT-EEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCSSGGG
T ss_pred EEEEEeccCCcHHHHHHHHHHHHHHHh---c------CC-eEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 5899998654 3344444444332 2 22 355666633 67777777778888889998885433 332
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh------------CCCCEEEEEEecCC
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND------------MDWDTFTIIYETHD 144 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~------------~~w~~v~ii~~~~~ 144 (821)
.......+...++|+|........ .....++.+..+..++...++.+++.+.. .|.++++++.....
T Consensus 73 ~~~~~~~~~~~~iPvV~~~~~~~~-~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~ 151 (309)
T 2fvy_A 73 AGTVIEKARGQNVPVVFFNKEPSR-KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG 151 (309)
T ss_dssp HHHHHHHHHTTTCCEEEESSCCCH-HHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTT
T ss_pred hHHHHHHHHHCCCcEEEecCCCCc-ccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCC
Confidence 333344556689999988543221 00001234667788888888888888776 78889999986532
Q ss_pred ---c---hhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCC--CCCChHHHHHHhhcC----CCcEEEEeCChhHHHHHHH
Q psy16206 145 ---N---LVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPP--DTDDYRPLLKEIKNS----SESHILLDCSMDKTVTILK 211 (821)
Q Consensus 145 ---~---~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~--~~~d~~~~l~~lk~~----~~~~ivl~~~~~~~~~~l~ 211 (821)
. ...+.+.+++. |..+... .+.. +..+....++++.+. .+++|+. ++...+..+++
T Consensus 152 ~~~~~~R~~gf~~~l~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~ 220 (309)
T 2fvy_A 152 HPDAEARTTYVIKELNDK----------GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVE 220 (309)
T ss_dssp CHHHHHHHHHHHHHHHHT----------TCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhc----------CCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHH
Confidence 2 33444455444 3444322 1111 112233455555544 4566554 55667788999
Q ss_pred HHHHcc
Q psy16206 212 QAKEVH 217 (821)
Q Consensus 212 ~a~~~g 217 (821)
++++.|
T Consensus 221 al~~~g 226 (309)
T 2fvy_A 221 ALKAHN 226 (309)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 999988
No 107
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.31 E-value=0.015 Score=61.62 Aligned_cols=200 Identities=8% Similarity=-0.081 Sum_probs=120.3
Q ss_pred CcEEEEeCCCc-----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhh--cCeEEEEcCCC
Q psy16206 1 MKIVGIFGPNE-----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATS--EGIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~~~~-----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~--~~V~aiiGp~~ 73 (821)
.+||++.|... ..+..+++-+.++. |+ ++.+.+.+ .++..-.+...+++. ++|++||-...
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~---------g~--~~~~~~~~-~~~~~~~~~i~~~i~~~~~vDgiIi~~~ 71 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDL---------GL--DLRILYAE-RDPQNTLQQARELFQGRDKPDYLMLVNE 71 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHH---------TC--EEEEEECT-TCHHHHHHHHHHHHHSSSCCSEEEEECC
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHc---------CC--eEEEEECC-CCHHHHHHHHHHHHhcCCCCCEEEEeCc
Confidence 37999999654 34555666555543 22 44445633 788887888899998 58888775434
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCC------CCCC-ccEEEEecChhhHHHHHHHHHHhCC------C-CEEEEE
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFI------PTNG-VHGVNVYPESHLISKGISVIINDMD------W-DTFTII 139 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~------~~~~-~~~~r~~p~~~~~~~al~~~~~~~~------w-~~v~ii 139 (821)
......+...+...++|+|........... ...+ .++..+.+++...+..+++.+...+ - ++++++
T Consensus 72 ~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i 151 (350)
T 3h75_A 72 QYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAF 151 (350)
T ss_dssp SSHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEE
T ss_pred hhhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 444555556777889999998654332000 0011 1366777888888888888887766 4 789988
Q ss_pred EecCC------chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcCCCcE-EEEeCChhHHHHHHH
Q psy16206 140 YETHD------NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNSSESH-ILLDCSMDKTVTILK 211 (821)
Q Consensus 140 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~~~~~-ivl~~~~~~~~~~l~ 211 (821)
..... -...+.+.+++.+ ...+....... +.......++++.+..+++ .|++++...+..+++
T Consensus 152 ~g~~~~~~~~~R~~Gf~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~ 222 (350)
T 3h75_A 152 SGLKVTPAAQLRERGLRRALAEHP---------QVHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQ 222 (350)
T ss_dssp ESCTTSHHHHHHHHHHHHHHHHCT---------TEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHCC---------CeEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHH
Confidence 76532 2344555555554 12222122211 1223334455555444443 344556677888999
Q ss_pred HHHHccccCc
Q psy16206 212 QAKEVHLMGD 221 (821)
Q Consensus 212 ~a~~~g~~~~ 221 (821)
++++.|+.-+
T Consensus 223 al~~~G~~vP 232 (350)
T 3h75_A 223 AARELGRKPG 232 (350)
T ss_dssp HHHHTTCCBT
T ss_pred HHHHcCCCCC
Confidence 9999998643
No 108
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.27 E-value=0.0074 Score=62.04 Aligned_cols=190 Identities=12% Similarity=0.037 Sum_probs=112.4
Q ss_pred cEEEEeCC-----Cc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCC
Q psy16206 2 KIVGIFGP-----NE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQ 72 (821)
Q Consensus 2 ~IG~i~~~-----~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~ 72 (821)
+||++++. .. ..+..+++-+.++ . |+++ .+.+++ .++....+....+..++|++||-..
T Consensus 10 ~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~---~------g~~~--~~~~~~-~~~~~~~~~~~~~~~~~vdgiIi~~ 77 (292)
T 3k4h_A 10 TLGLVMPSSASKAFQNPFFPEVIRGISSFAHV---E------GYAL--YMSTGE-TEEEIFNGVVKMVQGRQIGGIILLY 77 (292)
T ss_dssp EEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH---T------TCEE--EECCCC-SHHHHHHHHHHHHHTTCCCEEEESC
T ss_pred EEEEEecCCccccccCHHHHHHHHHHHHHHHH---c------CCEE--EEEeCC-CCHHHHHHHHHHHHcCCCCEEEEeC
Confidence 68999997 33 3444555544443 2 2333 444423 4555445555556667999887433
Q ss_pred CcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------ch
Q psy16206 73 SIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NL 146 (821)
Q Consensus 73 ~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~ 146 (821)
..... .....+...++|+|........ . +.+..+..++...+..+++.+...|.++++++..... -.
T Consensus 78 ~~~~~-~~~~~l~~~~iPvV~~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~ 150 (292)
T 3k4h_A 78 SREND-RIIQYLHEQNFPFVLIGKPYDR---K---DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRL 150 (292)
T ss_dssp CBTTC-HHHHHHHHTTCCEEEESCCSSC---T---TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHH
T ss_pred CCCCh-HHHHHHHHCCCCEEEECCCCCC---C---CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHH
Confidence 22222 3345566789999988544321 1 1134467777778888899998899999999987643 23
Q ss_pred hHHHHHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 147 VYLQQVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
..+.+.+++.+ ..+. ...-..+..+....++++.+. .++.|+ +++...+..+++++++.|+.-+
T Consensus 151 ~gf~~~l~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP 219 (292)
T 3k4h_A 151 AGMSDALKLAD----------IVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVP 219 (292)
T ss_dssp HHHHHHHHHTT----------CCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcC----------CCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCC
Confidence 44555555554 2211 111111122334455565555 456665 4566778889999999998643
No 109
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.27 E-value=0.008 Score=63.23 Aligned_cols=190 Identities=13% Similarity=0.039 Sum_probs=111.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++.+... ..+..+++-+.++ . |+.+ .+.+++ .++....+....++.++|++||-.......
T Consensus 65 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 132 (332)
T 2o20_A 65 TVGVILPTITSTYFAAITRGVDDIASM---Y------KYNM--ILANSD-NDVEKEEKVLETFLSKQVDGIVYMGSSLDE 132 (332)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHH---T------TCEE--EEEECT-TCHHHHHHHHHHHHHTTCSEEEECSSCCCH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHH---c------CCEE--EEEECC-CChHHHHHHHHHHHhCCCCEEEEeCCCCCH
Confidence 5899998544 3344555544443 2 3344 444533 677666667777887899988854332222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~ 151 (821)
..+.. +...++|+|........ +.+..+.+++...+..+++.+...|.++++++..+.. . ...+.+
T Consensus 133 ~~~~~-l~~~~iPvV~~~~~~~~-------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 204 (332)
T 2o20_A 133 KIRTS-LKNSRTPVVLVGTIDGD-------KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQE 204 (332)
T ss_dssp HHHHH-HHHHCCCEEEESCCCTT-------SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHHHH-HHhCCCCEEEEccccCC-------CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHH
Confidence 33333 34678999988543221 1123466777777788888888889999999987642 2 334455
Q ss_pred HHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
.+++.+ ..+... .+..+ ..+-...++++.+..+++|+. .+...+..+++++++.|+.-+.
T Consensus 205 al~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~ 267 (332)
T 2o20_A 205 ALLEAN----------IEFDENLVFEGNYSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPE 267 (332)
T ss_dssp HHHHTT----------CCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHcC----------CCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCcc
Confidence 555554 222100 11111 111223444443337787775 5566778899999999986443
No 110
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.24 E-value=0.019 Score=58.42 Aligned_cols=199 Identities=9% Similarity=0.036 Sum_probs=116.2
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIE 81 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~ 81 (821)
+||++++.........+..++++.=+.. |+ ++.+.+++ .++..-.+....++.++|++||-..... ....
T Consensus 9 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~--~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~ 78 (276)
T 3jy6_A 9 LIAVIVANIDDYFSTELFKGISSILESR-----GY--IGVLFDAN-ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTV 78 (276)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHTT-----TC--EEEEEECT-TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHC-----CC--EEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHH
Confidence 6899998655222222222233322221 33 44455533 6676666777777777998888544333 3444
Q ss_pred HHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC-c---hhHHHHHHHhcC
Q psy16206 82 SMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD-N---LVYLQQVLENAH 157 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~-~---~~~~~~~~~~~~ 157 (821)
..+...++|+|........ .. +-.+..++...++.+++.+...|.++++++..... . ..+.+.+.+...
T Consensus 79 ~~l~~~~iPvV~i~~~~~~----~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~ 151 (276)
T 3jy6_A 79 QEILHQQMPVVSVDREMDA----CP---WPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGILAAAQ 151 (276)
T ss_dssp HHHHTTSSCEEEESCCCTT----CS---SCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHCCCCEEEEecccCC----CC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHHHHHH
Confidence 5566789999988543321 11 23466777788888999999999999999988654 2 344455555554
Q ss_pred CCCCcCCCCCCeEEEEEcC-CCCCChHHHHHHhhcC-CCcEEEEeCChhHHHHHHHHHHHccccCcceEEE
Q psy16206 158 DDDKEIRPGRPSVTIRQLP-PDTDDYRPLLKEIKNS-SESHILLDCSMDKTVTILKQAKEVHLMGDYQNYI 226 (821)
Q Consensus 158 ~~~~~~~~~g~~v~~~~~~-~~~~d~~~~l~~lk~~-~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~~~~i 226 (821)
..+. +....-. .....+....+.++.. .++.|+ +++...+..+++++++.|+.-+.-.-+
T Consensus 152 -------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 213 (276)
T 3jy6_A 152 -------DVDV-LEVSESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTA 213 (276)
T ss_dssp -------EEEE-EEECSSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEE
T ss_pred -------hCCc-EEEeccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEE
Confidence 2222 1111000 1112244444445433 455554 466777888999999999875443333
No 111
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.19 E-value=0.0059 Score=63.60 Aligned_cols=193 Identities=9% Similarity=-0.018 Sum_probs=118.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
+||++++... ..+..+++-+.++. | +++.+.+. ..++....+....++.++|++||- |.....
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~---------g--~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 4 KIGMAIDDLRLERWQKDRDIFVKKAESL---------G--AKVFVQSA-NGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp EEEEEESCCSSSTTHHHHHHHHHHHHHT---------S--CEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHc---------C--CEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 6999999644 55666666666552 2 34455563 367777778888888888888874 443333
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHH-hCCCCEEEEEEecCC------chhHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIN-DMDWDTFTIIYETHD------NLVYL 149 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~-~~~w~~v~ii~~~~~------~~~~~ 149 (821)
.......+...++|+|........ .+....+..++...++.+++.+. ..|-++++++..... -...+
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf 145 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND------ADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQ 145 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT------SCCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC------CCceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHH
Confidence 334445567789999998644331 11113456777778888888887 899999999976443 24455
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEEcCC--CCCChHHHHHHhhcC---CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQLPP--DTDDYRPLLKEIKNS---SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~--~~~d~~~~l~~lk~~---~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
.+.+++.+ ...++.+....+.. +..+....++++.+. .++.|+ ++....+..+++++++.|+.
T Consensus 146 ~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 146 MKVLKPYV------DSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVV-ASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHH------HTTSEEEEEEEECGGGCHHHHHHHHHHHHHHTTTCCCEEE-ESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHHhhc------cCCCEEEEeeccCCCcCHHHHHHHHHHHHHhCCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 55555552 01134443333221 112233344444433 455554 45567788899999999986
No 112
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.18 E-value=0.0085 Score=61.72 Aligned_cols=196 Identities=9% Similarity=0.002 Sum_probs=116.7
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcc-
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIE- 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~- 75 (821)
+||++.+... ..+..+++-+.++ . |+ ++.+.+++ .++....+....++.++|++||- |..+.
T Consensus 17 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g~--~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 84 (298)
T 3tb6_A 17 TIGVLTTYISDYIFPSIIRGIESYLSE---Q------GY--SMLLTSTN-NNPDNERRGLENLLSQHIDGLIVEPTKSAL 84 (298)
T ss_dssp EEEEEESCSSSTTHHHHHHHHHHHHHH---T------TC--EEEEEECT-TCHHHHHHHHHHHHHTCCSEEEECCSSTTS
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHHH---C------CC--EEEEEeCC-CChHHHHHHHHHHHHCCCCEEEEecccccc
Confidence 5899998655 4455555555444 2 23 44555633 67777777888888889988874 33321
Q ss_pred --hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC-----chhH
Q psy16206 76 --NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD-----NLVY 148 (821)
Q Consensus 76 --~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~-----~~~~ 148 (821)
........+...++|+|........ . . +..+..++...++.+++.+...|.++++++..... -...
T Consensus 85 ~~~~~~~~~~~~~~~iPvV~~~~~~~~---~-~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~g 157 (298)
T 3tb6_A 85 QTPNIGYYLNLEKNGIPFAMINASYAE---L-A---APSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNG 157 (298)
T ss_dssp CCTTHHHHHHHHHTTCCEEEESSCCTT---C-S---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHH
T ss_pred cCCcHHHHHHHHhcCCCEEEEecCcCC---C-C---CCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHH
Confidence 3334445566789999988644331 1 1 23466777788888999998899999999987654 2344
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCC----CcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSS----ESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~----~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
+.+.+++.+ +......+...............++++.+.. ++.|+ +++...+..+++++++.|+.-+.
T Consensus 158 f~~~l~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~ 229 (298)
T 3tb6_A 158 FIQAHRERE-----LFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPE 229 (298)
T ss_dssp HHHHHHHTT-----CCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHcC-----CCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCC
Confidence 555555554 0000111211111111111234455544443 55555 45667788899999999986443
No 113
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.18 E-value=0.009 Score=61.87 Aligned_cols=187 Identities=10% Similarity=0.046 Sum_probs=113.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++++... ..+..+++-+.++ . |+.+ .+.+++ .++....+....++.++|++||-.......
T Consensus 17 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 84 (303)
T 3kke_A 17 TIGLIVPDVNNAVFADMFSGVQMAASG---H------STDV--LLGQID-APPRGTQQLSRLVSEGRVDGVLLQRREDFD 84 (303)
T ss_dssp CEEEEESCTTSTTHHHHHHHHHHHHHH---T------TCCE--EEEECC-STTHHHHHHHHHHHSCSSSEEEECCCTTCC
T ss_pred EEEEEeCCCcChHHHHHHHHHHHHHHH---C------CCEE--EEEeCC-CChHHHHHHHHHHHhCCCcEEEEecCCCCc
Confidence 5899998655 4455555555443 2 2333 445533 566666667777777799988843333222
Q ss_pred H-HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHH
Q psy16206 78 N-IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQ 150 (821)
Q Consensus 78 ~-~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~ 150 (821)
. .+..+.+ ++|+|....... . .+-.+..++...+..+++.+...|.++++++..... -...+.
T Consensus 85 ~~~~~~l~~--~iPvV~i~~~~~----~----~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 154 (303)
T 3kke_A 85 DDMLAAVLE--GVPAVTINSRVP----G----RVGSVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYL 154 (303)
T ss_dssp HHHHHHHHT--TSCEEEESCCCT----T----CCCEEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCEEEECCcCC----C----CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHH
Confidence 3 4555554 999998854322 1 223466777778888888888899999999986543 244555
Q ss_pred HHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHh-----hcC--CCcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 151 QVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEI-----KNS--SESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~l-----k~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
+.+++.+ ..+. ...-..+..+-...++++ .+. .++.|+ +++...+..+++++++.|+.-
T Consensus 155 ~al~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~v 223 (303)
T 3kke_A 155 ETLASAG----------LRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVV-VASVNAAVGALSTALRLGLRV 223 (303)
T ss_dssp HHHHHTT----------CCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcC----------CCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCC
Confidence 5665554 2211 111111122233456666 443 456555 455677888999999999864
Q ss_pred c
Q psy16206 221 D 221 (821)
Q Consensus 221 ~ 221 (821)
+
T Consensus 224 P 224 (303)
T 3kke_A 224 P 224 (303)
T ss_dssp T
T ss_pred C
Confidence 4
No 114
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.18 E-value=0.0044 Score=63.15 Aligned_cols=190 Identities=9% Similarity=-0.011 Sum_probs=99.9
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.+.-. ..+..+++-+. .+. |+++ .+.+++ .++....+....++.++|++||........
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~---~~~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 68 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVL---LEQ------RYDL--ALFPIL-SLARLKRYLENTTLAYLTDGLILASYDLTE 68 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHH---GGG------TCEE--EECCCC-SCCCCC---------CCCSEEEEESCCCC-
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHH---HHC------CCEE--EEEeCC-CchhhHHHHHHHHHhCCCCEEEEecCCCCH
Confidence 4899998544 33334444333 322 2333 444423 455554556667777789888854333222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecC-----C--ch-hHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETH-----D--NL-VYL 149 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~-----~--~~-~~~ 149 (821)
.. ...+...++|+|....... + +..+..++...++.+++.+...|.++++++.... . .. .+.
T Consensus 69 ~~-~~~~~~~~iPvV~~~~~~~--------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~ 138 (276)
T 2h0a_A 69 RF-EEGRLPTERPVVLVDAQNP--------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERM 138 (276)
T ss_dssp ------CCSCSSCEEEESSCCT--------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHH
T ss_pred HH-HHHHhhcCCCEEEEeccCC--------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHH
Confidence 22 3345668999998853221 1 3456677777888888988888999999998654 2 22 334
Q ss_pred HHHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcCC--CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNSS--ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~~--~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+.+... ..|..+. ...-+.+..+....++++.+.. ++.|+ +++...+..+++++++.|+.-+
T Consensus 139 ~gf~~~l~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP 207 (276)
T 2h0a_A 139 AGFQEALK-------EAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPG 207 (276)
T ss_dssp HHHHHHHH-------HTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHH-------HcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCC
Confidence 43333332 1222221 1111111122334556665543 56655 5566778889999999998644
No 115
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.17 E-value=0.0065 Score=62.49 Aligned_cols=189 Identities=7% Similarity=-0.053 Sum_probs=109.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHH---HHHHHhhcCeEEEEcCCCc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAK---LMCNATSEGIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~---~a~~li~~~V~aiiGp~~s 74 (821)
+||++.+... ..+..+++-+.++ . |+++ .+.+++ .++....+ ....++.++|++||-....
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~---~------g~~~--~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 77 (290)
T 2rgy_A 10 IIGLFVPTFFGSYYGTILKQTDLELRA---V------HRHV--VVATGC-GESTPREQALEAVRFLIGRDCDGVVVISHD 77 (290)
T ss_dssp EEEEECSCSCSHHHHHHHHHHHHHHHH---T------TCEE--EEECCC-SSSCHHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHHH---C------CCEE--EEEeCC-CchhhhhhHHHHHHHHHhcCccEEEEecCC
Confidence 6899998654 3444555555443 2 3344 344533 45555555 6677777799988854333
Q ss_pred chHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhH
Q psy16206 75 ENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVY 148 (821)
Q Consensus 75 ~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~ 148 (821)
.....+. .+...++|+|........ +.+..+..++...+..+++.+...|.++++++..... . ...
T Consensus 78 ~~~~~~~-~l~~~~iPvV~~~~~~~~-------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 78 LHDEDLD-ELHRMHPKMVFLNRAFDA-------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp SCHHHHH-HHHHHCSSEEEESSCCTT-------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHH
T ss_pred CCHHHHH-HHhhcCCCEEEEccccCC-------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHH
Confidence 2233333 345579999988543221 1123466777777888888888889999999987643 2 333
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+.+++.+ ..+. ...-..+..+-...++++.+. .++.|+ +++...+..+++++++.|+.-+
T Consensus 150 f~~al~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP 216 (290)
T 2rgy_A 150 FFDELARHG----------IARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVP 216 (290)
T ss_dssp HHHHHHTTT----------CCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHcC----------CCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCC
Confidence 444444443 2211 111111111223344554433 567766 4556778889999999998643
No 116
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.16 E-value=0.0037 Score=64.32 Aligned_cols=188 Identities=11% Similarity=0.051 Sum_probs=100.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEE-EecCCChhHHHHHHHHHhhcCeEEEEcCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQ-HVENYDSLHTAKLMCNATSEGIAAIFGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~-D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~ 76 (821)
+||++.+... ..+..+++.+.+ .. |+++. +. +++ .++....+....++.++|++||.......
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~a~----~~-----g~~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 77 (290)
T 3clk_A 10 VIAAVVSSVRTNFAQQILDGIQEEAH----KN-----GYNLI--IVYSGS-ADPEEQKHALLTAIERPVMGILLLSIALT 77 (290)
T ss_dssp EEEEECCCCSSSHHHHHHHHHHHHHH----TT-----TCEEE--EEC-----------CHHHHHHSSCCSEEEEESCC--
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH----Hc-----CCeEE--EEeCCC-CCHHHHHHHHHHHHhcCCCEEEEecccCC
Confidence 6899998544 334444444433 22 33443 34 422 45555555667777779998885333322
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQ 150 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~ 150 (821)
...+ ..+...++|+|........ + +..+.+++...+..+++.+...|.++++++..... . ...+.
T Consensus 78 ~~~~-~~l~~~~iPvV~~~~~~~~-------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (290)
T 3clk_A 78 DDNL-QLLQSSDVPYCFLSMGFDD-------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYK 148 (290)
T ss_dssp --CH-HHHHCC--CEEEESCC--C-------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHH
T ss_pred HHHH-HHHHhCCCCEEEEcCCCCC-------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHH
Confidence 2223 3345689999988543221 1 33567777778888889888889999999986532 2 33444
Q ss_pred HHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhc-CCCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKN-SSESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~-~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ ..+. ...-+.+..+-...++++.+ ..+++|+. .+...+..+++++++.|+.-+
T Consensus 149 ~~l~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP 212 (290)
T 3clk_A 149 KALKEAN----------IAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVP 212 (290)
T ss_dssp HHHHHTT----------CCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcC----------CCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCC
Confidence 5555543 2221 11111111222344555543 35666664 456678889999999998643
No 117
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.16 E-value=0.0019 Score=67.30 Aligned_cols=172 Identities=10% Similarity=-0.015 Sum_probs=95.4
Q ss_pred HHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccch-hhhc----ceeecccceeeceEEEE
Q psy16206 447 MIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITS-ERRA----AVDFTMPFMTLGISILY 520 (821)
Q Consensus 447 ~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~-~R~~----~~~fS~p~~~~~~~l~~ 520 (821)
.+.+++ |++++++..+ ++.+++.+|.+|++|+++.+..... .+.+ .+.++.|+...+.++++
T Consensus 24 ~~~~~~~g~~v~~~~~~------------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~ 91 (308)
T 2x26_A 24 LLEKRYPESKISWVEFP------------AGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILV 91 (308)
T ss_dssp HHHHHCTTSEEEEEECS------------SHHHHHHHHHHTSCSEEEECSHHHHHHHHTTCCEEEEEEECCCGGGEEEEE
T ss_pred hHhHhcCCCceEEEECC------------CcHHHHHHHHCCCCCEEcccCcHHHHHHhcCCCeEEEEEecCCCCceEEEE
Confidence 456666 9999998764 4578999999999999876543321 1211 34567777777889999
Q ss_pred EcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhhc--cCCcccccC
Q psy16206 521 RKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMES--SRPSVFVKS 598 (821)
Q Consensus 521 ~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 598 (821)
+++++ ..++ +.++..+..+. .+.... .....+++...- ........+
T Consensus 92 ~~~~~-i~s~-~dL~Gk~i~~~-------~gs~~~----------------------~~l~~~l~~~Gl~~~~v~~~~~~ 140 (308)
T 2x26_A 92 AENSP-IKTV-ADLKGHKVAFQ-------KGSSSH----------------------NLLLRALRQAGLKFTDIQPTYLT 140 (308)
T ss_dssp ETTCS-CCSG-GGGTTSEEEEC-------TTSHHH----------------------HHHHHHHHHTTCCGGGSEEEECC
T ss_pred eCCCC-CCCH-HHcCCCEEeee-------CCCcHH----------------------HHHHHHHHHcCCCHHHeEEEecC
Confidence 98765 2232 23332222110 000000 000111111100 011112345
Q ss_pred chhHHHHHHhccCceEEEecccchhhhhhhcCCceeecc--eecCCCcccccCC------chhhcccccceeE
Q psy16206 599 NKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGG--LLDSKGYGIAMPT------SKFLAKFSFGFAK 663 (821)
Q Consensus 599 ~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~k------~~l~~~in~al~~ 663 (821)
..+++.++.. |++|+++.+...+.....+. .++.+.. .+....-.+++++ +++++.+++++.+
T Consensus 141 ~~~~~~al~~-G~vDa~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~ 211 (308)
T 2x26_A 141 PADARAAFQQ-GNVDAWAIWDPYYSAALLQG-GVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSE 211 (308)
T ss_dssp HHHHHHHHHT-TSSSEEEEETTHHHHHHHHS-SEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHc-CCCCEEEecchhHHHHHhcC-CcEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHH
Confidence 6788889988 99999999888777666543 3444432 1112222233332 6777777777764
No 118
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=97.15 E-value=4.8e-05 Score=91.46 Aligned_cols=105 Identities=45% Similarity=0.683 Sum_probs=92.4
Q ss_pred ChHHHHHHHHhhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhc-CCceeecceecCCCcccccCC-chh
Q psy16206 576 NVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN-CDLMQVGGLLDSKGYGIAMPT-SKF 653 (821)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~k-~~l 653 (821)
....|.++++.+....+.+.+++.+++++++++.++.+|++.+...+.|..+++ |++..++..+...+++++++| ++|
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl 733 (823)
T 3kg2_A 654 KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSL 733 (823)
T ss_dssp CCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSS
T ss_pred cchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCCChH
Confidence 345567777778777777788899999999984477899999999999988776 999999999999999999999 999
Q ss_pred hcccccceeEEEEeecCCccccccCCCCC
Q psy16206 654 LAKFSFGFAKLRVLFQGEPYMMKNPETGE 682 (821)
Q Consensus 654 ~~~in~al~~l~~~~~g~~~~i~~k~~g~ 682 (821)
++.+|.+|.++++ +|.++++.++|+.+
T Consensus 734 ~~~~~~~il~l~e--~G~~~~~~~~w~~~ 760 (823)
T 3kg2_A 734 GTPVNLAVLKLSE--QGLLDKLKNKWWYD 760 (823)
T ss_dssp HHHHHHHHHHHHH--TTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh--CCcHHHHHHhhCcC
Confidence 9999999999999 99999999999864
No 119
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.10 E-value=0.011 Score=60.21 Aligned_cols=188 Identities=12% Similarity=0.006 Sum_probs=106.7
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++++... ..+..+++-+.++ . |+. +.+.+++ .++....+....++.+++++||-...+ .
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~---~------g~~--~~~~~~~-~~~~~~~~~~~~l~~~~~dgiIi~~~~--~ 75 (277)
T 3e61_A 10 LIGLLLPDMSNPFFTLIARGVEDVALA---H------GYQ--VLIGNSD-NDIKKAQGYLATFVSHNCTGMISTAFN--E 75 (277)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHHHHH---T------TCC--EEEEECT-TCHHHHHHHHHHHHHTTCSEEEECGGG--H
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHH---C------CCE--EEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEecCC--h
Confidence 6899998644 3344445444433 2 223 3445533 577766677777888888888853322 2
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---chhHHHHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---NLVYLQQVLE 154 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~~~~~~~~~~ 154 (821)
..+.+.+...++|+|........ . . .+..++...++.+++.+...|.++++++..... ...+.+.+.+
T Consensus 76 ~~~~~~l~~~~iPvV~~~~~~~~---~---~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 146 (277)
T 3e61_A 76 NIIENTLTDHHIPFVFIDRINNE---H---N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKY 146 (277)
T ss_dssp HHHHHHHHHC-CCEEEGGGCC------------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeccCCC---C---C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 33331566779999998654332 1 1 567777778888889998899999999986543 2333333444
Q ss_pred hcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhc-CCCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 155 NAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKN-SSESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 155 ~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~-~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
... ..|..+..... . ..+.....+.++. ..+++|+. .+...+..+++++++.|+.-+.
T Consensus 147 ~l~-------~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 205 (277)
T 3e61_A 147 ILD-------QQRIDYKMLEA-T-LLDNDKKFIDLIKELSIDSIIC-SNDLLAINVLGIVQRYHFKVPA 205 (277)
T ss_dssp HHH-------C---CEEEEEG-G-GGGSHHHHHHHHHHHTCCEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHH-------HcCCCccceec-C-CCCHHHHHHHhhcCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 443 33444443221 1 1222333333443 36676664 4567788899999999986443
No 120
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.07 E-value=0.02 Score=60.39 Aligned_cols=191 Identities=12% Similarity=0.033 Sum_probs=110.1
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++.+... ..+..+++-+.++ . |+++. +.+++ .++....+....++.++|++||-.......
T Consensus 60 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g~~~~--~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 127 (340)
T 1qpz_A 60 SIGLLATSSEAAYFAEIIEAVEKNCFQ---K------GYTLI--LGNAW-NNLEKQRAYLSMMAQKRVDGLLVMCSEYPE 127 (340)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHH---T------TCEEE--EEECT-TCHHHHHHHHHHHHHTTCSEEEECCSCCCH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHH---c------CCEEE--EEeCC-CCHHHHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 5899998644 3344555554443 2 33443 45533 677666667777887899988853222211
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~ 151 (821)
..+..+.+..++|+|........ .++...+..++...+..+++.+...|.++++++..... . ...+.+
T Consensus 128 ~~~~~l~~~~~iPvV~~~~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~ 201 (340)
T 1qpz_A 128 PLLAMLEEYRHIPMVVMDWGEAK------ADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMK 201 (340)
T ss_dssp HHHHHHHTTTTSCEEEEEESSCC------CSSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCEEEEecccCC------CCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHHH
Confidence 22222223368999988543221 12223566777777788888888889999999976532 2 344455
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCC---hHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDD---YRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d---~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+ ..+....+.....+ -...++++.+. .+++|+. .+...+..+++++++.|+.-+
T Consensus 202 al~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP 265 (340)
T 1qpz_A 202 AMEEAM----------IKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVP 265 (340)
T ss_dssp HHHHTT----------CCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHCC----------CCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCC
Confidence 555544 22211111111112 23345555543 4666664 456677889999999998644
No 121
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.05 E-value=0.012 Score=60.08 Aligned_cols=182 Identities=10% Similarity=0.010 Sum_probs=111.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++++... ..+..+++-+.++ . |+.+ +.+.+++ .++....+....++.++|++||-.. . .
T Consensus 12 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g~~~-~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~-~-~- 77 (277)
T 3hs3_A 12 MIGIIIPDLNNRFYAQIIDGIQEVIQK---E------GYTA-LISFSTN-SDVKKYQNAIINFENNNVDGIITSA-F-T- 77 (277)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH---T------TCEE-EEEECSS-CCHHHHHHHHHHHHHTTCSEEEEEC-C-C-
T ss_pred EEEEEeCCCCChhHHHHHHHHHHHHHH---C------CCCE-EEEEeCC-CChHHHHHHHHHHHhCCCCEEEEcc-h-H-
Confidence 5899998655 3344445444433 2 3330 4455533 6776666677778888888887432 1 1
Q ss_pred HHHHHHhccCCCceeeeccC-CCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWD-PNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~-~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~ 150 (821)
...+...++|+|..... ... +.+ .+..++...+..+++.+. .|.++++++..... . ...+.
T Consensus 78 ---~~~~~~~~iPvV~~~~~~~~~-------~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~ 145 (277)
T 3hs3_A 78 ---IPPNFHLNTPLVMYDSANIND-------DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMT 145 (277)
T ss_dssp ---CCTTCCCSSCEEEESCCCCCS-------SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHH
T ss_pred ---HHHHHhCCCCEEEEcccccCC-------CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHH
Confidence 12346679999988643 221 224 778888888888888888 99999999986643 2 33344
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
+.+++. |..+... +.....+ ...++++.+. .++.|+ +.+...+..+++++++.|+.-+.
T Consensus 146 ~~l~~~----------g~~~~~~-~~~~~~~-~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 206 (277)
T 3hs3_A 146 AEASKL----------KIDYLLE-ETPENNP-YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPD 206 (277)
T ss_dssp HHHHHT----------TCEEEEE-ECCSSCH-HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHC----------CCCCCCC-CccCCch-HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCC
Confidence 444444 4555443 3222222 4555555543 456554 45566788899999999987443
No 122
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.05 E-value=0.018 Score=59.49 Aligned_cols=199 Identities=9% Similarity=-0.028 Sum_probs=116.0
Q ss_pred CcEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcc
Q psy16206 1 MKIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIE 75 (821)
Q Consensus 1 i~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~ 75 (821)
++||++.+... ..+..+++-+.++. | +++.+.+ . .++....+....++.++|++||- |..+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~---------g--~~~~~~~-~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 69 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDL---------G--FEVIKIA-V-PDGEKTLNAIDSLAASGAKGFVICTPDPK 69 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHH---------T--EEEEEEE-C-CSHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHc---------C--CEEEEeC-C-CCHHHHHHHHHHHHHcCCCEEEEeCCCch
Confidence 37999998665 44556666655553 2 3445666 3 47777778888899889998874 44444
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHH-hCCC-----CEEEEEE-ecCC----
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIN-DMDW-----DTFTIIY-ETHD---- 144 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~-~~~w-----~~v~ii~-~~~~---- 144 (821)
........+...++|+|........ ........+..+..++...+..+++.+. +.|- ++++++. ....
T Consensus 70 ~~~~~~~~~~~~~iPvV~~~~~~~~-~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~ 148 (306)
T 8abp_A 70 LGSAIVAKARGYDMKVIAVDDQFVN-AKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA 148 (306)
T ss_dssp GHHHHHHHHHHTTCEEEEESSCCBC-TTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHH
T ss_pred hhHHHHHHHHHCCCcEEEeCCCCCC-ccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHH
Confidence 4444445667789999988643221 0011011234466677766776666554 3233 3888886 3332
Q ss_pred --chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcCC--CcE-EEEeCChhHHHHHHHHHHHccc
Q psy16206 145 --NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNSS--ESH-ILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~~--~~~-ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
-...+.+.+++.+ .....+....... +..+....++++.+.. ++. +|++++...+.-+++++++.|+
T Consensus 149 ~~R~~Gf~~~l~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~ 221 (306)
T 8abp_A 149 RRRTTGSMDALKAAG-------FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 221 (306)
T ss_dssp HHHHHHHHHHHHHHT-------CCGGGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcC-------CCCcEEEeeccCCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCC
Confidence 2445555666654 1122333222211 1223344555555554 455 3555666778889999999998
Q ss_pred cC
Q psy16206 219 MG 220 (821)
Q Consensus 219 ~~ 220 (821)
.-
T Consensus 222 ~v 223 (306)
T 8abp_A 222 KA 223 (306)
T ss_dssp CG
T ss_pred CC
Confidence 64
No 123
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.02 E-value=0.014 Score=60.14 Aligned_cols=165 Identities=11% Similarity=0.029 Sum_probs=96.5
Q ss_pred EEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhh
Q psy16206 40 PIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHL 119 (821)
Q Consensus 40 ~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~ 119 (821)
+.+.+++ .++....+....+..++|++||-....... .....+...++|+|........ . ...+..+..++..
T Consensus 45 ~~~~~~~-~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~---~--~~~~~~V~~D~~~ 117 (295)
T 3hcw_A 45 TQTTVSN-NMNDLMDEVYKMIKQRMVDAFILLYSKEND-PIKQMLIDESMPFIVIGKPTSD---I--DHQFTHIDNDNIL 117 (295)
T ss_dssp EEECCCC-SHHHHHHHHHHHHHTTCCSEEEESCCCTTC-HHHHHHHHTTCCEEEESCCCSS---G--GGGSCEEEECHHH
T ss_pred EEEEcCC-CChHHHHHHHHHHHhCCcCEEEEcCcccCh-HHHHHHHhCCCCEEEECCCCcc---c--cCCceEEecCcHH
Confidence 3444423 455555555566666799888743222222 2334466789999988543321 1 0023446677777
Q ss_pred HHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcC-
Q psy16206 120 ISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNS- 192 (821)
Q Consensus 120 ~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~- 192 (821)
-+..+++.+...|.++++++..... . ...+.+.+++. |..+.......+..+....++++.+.
T Consensus 118 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~----------g~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (295)
T 3hcw_A 118 ASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQF----------NLDYQIIETSNEREVILNYMQNLHTRL 187 (295)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHT----------TCEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHc----------CCCeeEEeccCCHHHHHHHHHHHHhhc
Confidence 7888888888889999999987643 2 33444444444 44444222222222233344444332
Q ss_pred ----CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 193 ----SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 193 ----~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
.+++|+ +++...+..+++++++.|+.-+.
T Consensus 188 ~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 220 (295)
T 3hcw_A 188 KDPNIKQAII-SLDAMLHLAILSVLYELNIEIPK 220 (295)
T ss_dssp TCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred ccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 466655 46667788899999999987543
No 124
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=96.99 E-value=0.03 Score=57.42 Aligned_cols=188 Identities=6% Similarity=-0.081 Sum_probs=110.0
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
+||++++.+. ..+..+++-+.++ . |+++.+... + .+.. ..+....++.++|++||-........
T Consensus 14 ~Igvi~~~~~~~~~~~~~gi~~~a~~---~------g~~~~~~~~--~-~~~~-~~~~~~~l~~~~vdgiIi~~~~~~~~ 80 (289)
T 3k9c_A 14 LLGVVFELQQPFHGDLVEQIYAAATR---R------GYDVMLSAV--A-PSRA-EKVAVQALMRERCEAAILLGTRFDTD 80 (289)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHH---T------TCEEEEEEE--B-TTBC-HHHHHHHHTTTTEEEEEEETCCCCHH
T ss_pred EEEEEEecCCchHHHHHHHHHHHHHH---C------CCEEEEEeC--C-CCHH-HHHHHHHHHhCCCCEEEEECCCCCHH
Confidence 5888884433 3344455444433 2 334444433 3 3333 45566677777999988543333334
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC-----chhHHHHHH
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD-----NLVYLQQVL 153 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~-----~~~~~~~~~ 153 (821)
.+..+ .. ++|+|........ +.+-.+..++..-++.+++.+...|.++++++..... -...+.+.+
T Consensus 81 ~~~~~-~~-~iPvV~i~~~~~~-------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al 151 (289)
T 3k9c_A 81 ELGAL-AD-RVPALVVARASGL-------PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAM 151 (289)
T ss_dssp HHHHH-HT-TSCEEEESSCCSS-------TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHH
T ss_pred HHHHH-Hc-CCCEEEEcCCCCC-------CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHH
Confidence 44443 44 9999988543321 1234567787778888889998899999999987543 234455555
Q ss_pred HhcCCCCCcCCCCCCe--EEEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 154 ENAHDDDKEIRPGRPS--VTIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~--v~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
++.+ .. .....-..+..+-...++++.+. .++.|+ +++...+..+++++++.|+.-+.
T Consensus 152 ~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 213 (289)
T 3k9c_A 152 DRHG----------LSASATVVTGGTTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDVPA 213 (289)
T ss_dssp HHTT----------CGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHCC----------CCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 5554 32 22111111122233455555543 456555 45667788899999999987443
No 125
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.99 E-value=0.027 Score=57.74 Aligned_cols=193 Identities=7% Similarity=-0.032 Sum_probs=105.9
Q ss_pred cEEEEeCCCch--HHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHH
Q psy16206 2 KIVGIFGPNEE--EVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNI 79 (821)
Q Consensus 2 ~IG~i~~~~~~--~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~ 79 (821)
.||+++|.... ..-..+..++++.=+. .|+.+. +.+++ .+.....+....+..++|++||-.........
T Consensus 10 ~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-----~g~~~~--~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 81 (288)
T 3gv0_A 10 VIALVLSVDEELMGFTSQMVFGITEVLST-----TQYHLV--VTPHI-HAKDSMVPIRYILETGSADGVIISKIEPNDPR 81 (288)
T ss_dssp EEEEECBCCCCSSCHHHHHHHHHHHHHTT-----SSCEEE--ECCBS-SGGGTTHHHHHHHHHTCCSEEEEESCCTTCHH
T ss_pred EEEEEecCCccccHHHHHHHHHHHHHHHH-----cCCEEE--EecCC-cchhHHHHHHHHHHcCCccEEEEecCCCCcHH
Confidence 58999985331 2222222233332222 134444 44422 33333323333344568887773222222222
Q ss_pred HHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHHHH
Q psy16206 80 IESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQVL 153 (821)
Q Consensus 80 v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~~~ 153 (821)
...+...++|+|........ . .+-.+..++...+..+++.+...|.++++++..... . ...+.+.+
T Consensus 82 -~~~l~~~~iPvV~i~~~~~~----~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l 153 (288)
T 3gv0_A 82 -VRFMTERNMPFVTHGRSDMG----I---EHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGI 153 (288)
T ss_dssp -HHHHHHTTCCEEEESCCCSS----C---CCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred -HHHHhhCCCCEEEECCcCCC----C---CCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHH
Confidence 34456689999988543321 1 123467788888888999998999999999986543 2 33444444
Q ss_pred HhcCCCCCcCCCCCCeEEEEEcCCCCCC---hHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 154 ENAHDDDKEIRPGRPSVTIRQLPPDTDD---YRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~~~~~~~~~d---~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
++.+ ..+..........+ ....++++.+. .++.|+ +++...+..+++++++.|+.-+
T Consensus 154 ~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP 215 (288)
T 3gv0_A 154 RDFG----------LTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIG 215 (288)
T ss_dssp HHTT----------CEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTT
T ss_pred HHcC----------CCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCC
Confidence 4443 44332211121222 33455666554 456655 5566778889999999998644
No 126
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=96.97 E-value=0.011 Score=61.96 Aligned_cols=184 Identities=10% Similarity=0.025 Sum_probs=109.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++.+... ..+..+++.+.++ . |+.+ .+.+++ .++....+....++.++|++|| .......
T Consensus 62 ~Igvi~~~~~~~~~~~~~~gi~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgiI-~~~~~~~ 128 (330)
T 3ctp_A 62 TIGLMVPNISNPFFNQMASVIEEYAKN---K------GYTL--FLCNTD-DDKEKEKTYLEVLQSHRVAGII-ASRSQCE 128 (330)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH---T------TCEE--EEEECT-TCHHHHHHHHHHHHHTTCSEEE-EETCCCS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHH---C------CCEE--EEEeCC-CChHHHHHHHHHHHhCCCCEEE-ECCCCCH
Confidence 6899998654 3344555554443 2 3344 445533 6777767777788888999998 4433222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~~~~~ 151 (821)
..+...++|+|....... . . +..+..++...+..+++++...|.++++++..... . ...+.+
T Consensus 129 ----~~l~~~~iPvV~~~~~~~----~-~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 196 (330)
T 3ctp_A 129 ----DEYANIDIPVVAFENHIL----D-N---IITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLD 196 (330)
T ss_dssp ----GGGTTCCSCEEEESSCCC----T-T---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHH
T ss_pred ----HHHHhcCCCEEEEeccCC----C-C---CCEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHH
Confidence 234567999998754322 1 1 23456677777788888888889999999987643 2 334444
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHHHHhhc-CCCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLLKEIKN-SSESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l~~lk~-~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+ ..+....+..+ ..+-...++++.+ ..+++|+. ++...+..+++++++.|+.-+
T Consensus 197 al~~~g----------~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP 258 (330)
T 3ctp_A 197 GARAKD----------LEIDFIEFQHDFQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIP 258 (330)
T ss_dssp HHHHTT----------CCCEEEECSSSCCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcC----------CCcceeEEcCCCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCC
Confidence 555543 33321122211 1111122333333 35677664 445667789999999998644
No 127
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=96.95 E-value=0.011 Score=62.03 Aligned_cols=189 Identities=12% Similarity=0.033 Sum_probs=110.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++.+... ..+..+++-+.++ . |+.+ .+.+++ .++....+....++.++|++||-.......
T Consensus 62 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~---~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 129 (332)
T 2hsg_A 62 TVGVIIPDISNIFYAELARGIEDIATM---Y------KYNI--ILSNSD-QNQDKELHLLNNMLGKQVDGIIFMSGNVTE 129 (332)
T ss_dssp EEEEEEC--CCSHHHHHHHHHHHHHHH---H------TCEE--EEEECC-SHHHHHHHHHHHTSCCSSCCEEECCSSCCH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHH---c------CCEE--EEEeCC-CChHHHHHHHHHHHhCCCcEEEEecCCCCH
Confidence 5899998533 4455566655544 2 2344 344533 566555566666777789888754333222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecC-C---c---hhHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETH-D---N---LVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~-~---~---~~~~~ 150 (821)
..+. .+...++|+|....... . +.+..+..++...+..+++.+...|.++++++.... . . ...+.
T Consensus 130 ~~~~-~l~~~~iPvV~~~~~~~----~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~ 201 (332)
T 2hsg_A 130 EHVE-ELKKSPVPVVLAASIES----T---NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYK 201 (332)
T ss_dssp HHHH-HHTTSSSCEEEESCCCS----C---TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHH
T ss_pred HHHH-HHHhCCCCEEEEccccC----C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHH
Confidence 3333 34568999998854322 1 122346677777778888888888999999998764 3 2 34445
Q ss_pred HHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ +.+. ...-..+..+-...++++.+. .++.|+ +.+...+..+++++++.|+.-+
T Consensus 202 ~al~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP 266 (332)
T 2hsg_A 202 RALTESG----------LPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVP 266 (332)
T ss_dssp HHHHTTT----------CCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHcC----------CCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCC
Confidence 5555443 2221 111111112223455555544 467666 4556678889999999998633
No 128
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=96.93 E-value=0.051 Score=54.96 Aligned_cols=188 Identities=10% Similarity=0.015 Sum_probs=105.7
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
+||++.+... ..+..+++-+.++ . |++ +.+.+++ .++..-.+....++.++|++||- |.....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~---~------g~~--~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 70 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADK---L------GYN--LVVLDSQ-NNPAKELANVQDLTVRGTKILLINPTDSDA 70 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHH---H------TCE--EEEEECT-TCHHHHHHHHHHHTTTTEEEEEECCSSTTT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHH---c------CcE--EEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEeCCChHH
Confidence 5899988654 3444555554443 2 223 3445533 56666556667777779998873 433332
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC--CCCEEEEEEecCC------chhH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM--DWDTFTIIYETHD------NLVY 148 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~--~w~~v~ii~~~~~------~~~~ 148 (821)
.......+...++|+|........ . +....+..++..-++.+++.+... |.++++++..... -...
T Consensus 71 ~~~~~~~~~~~~iPvV~i~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~G 144 (271)
T 2dri_A 71 VGNAVKMANQANIPVITLDRQATK---G---EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEG 144 (271)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSS---S---CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEecCCCCC---C---ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHH
Confidence 222233455679999988543221 1 112235667766777777777665 5689999985432 1334
Q ss_pred HHHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 149 LQQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
+.+.+++.+ +.+....... +...-...++++.+. .++.|+ +.+...+..+++++++.|+
T Consensus 145 f~~al~~~g----------~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 145 FQQAVAAHK----------FNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVF-AQNDEMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHHHHT----------CEEEEEEECTTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCC----------CEEEEecCCCCCHHHHHHHHHHHHHhCCCccEEE-ECCCcHHHHHHHHHHHcCC
Confidence 455555543 4443222111 111223344444433 345544 5556778889999999998
No 129
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=96.91 E-value=0.0096 Score=61.10 Aligned_cols=189 Identities=10% Similarity=-0.033 Sum_probs=110.2
Q ss_pred cEEEEeCC-C---c----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCC
Q psy16206 2 KIVGIFGP-N---E----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQS 73 (821)
Q Consensus 2 ~IG~i~~~-~---~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~ 73 (821)
+||++.+. . . ..+..+++-+.++ . |+++. +.+++ .++....+....++.++|++||-...
T Consensus 6 ~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~---~------g~~~~--~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 6 MIGYSWTQTEPGQVNHILDQFLSSMVREAGA---V------NYFVL--PFPFS-EDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp EEEECCCCCCTTCSCCTHHHHHHHHHHHHHH---T------TCEEE--ECCCC-SSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred EEEEEecccccccCChhHHHHHHHHHHHHHH---c------CCEEE--EEeCC-CchHHHHHHHHHHHcCCCCEEEEeec
Confidence 58999886 3 3 4455666655554 2 33443 34422 45555555667777779998885333
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hh
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LV 147 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~ 147 (821)
......+ ..+...++|+|........ +.+..+..++...+..+++.+...|.++++++..... . ..
T Consensus 74 ~~~~~~~-~~l~~~~iPvV~~~~~~~~-------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 145 (287)
T 3bbl_A 74 NYNDPRV-QFLLKQKFPFVAFGRSNPD-------WDFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQ 145 (287)
T ss_dssp CTTCHHH-HHHHHTTCCEEEESCCSTT-------CCCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCcHHH-HHHHhcCCCEEEECCcCCC-------CCCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHH
Confidence 2222333 3345679999988543221 1123466777777888888888889999999986532 1 33
Q ss_pred HHHHHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhc-C---CCcEEEEeCChhHHHHHHHHHHHccccC
Q psy16206 148 YLQQVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKN-S---SESHILLDCSMDKTVTILKQAKEVHLMG 220 (821)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~-~---~~~~ivl~~~~~~~~~~l~~a~~~g~~~ 220 (821)
.+.+.+++.+ +.+. ...-..+..+-...++++.+ . .+++|+. .+...+..+++++++.|+.-
T Consensus 146 Gf~~~l~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~v 214 (287)
T 3bbl_A 146 GYLEAMQTAQ----------LPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTI 214 (287)
T ss_dssp HHHHHHHHTT----------CCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHcC----------CCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCC
Confidence 4455555543 2221 11111111223345566655 3 4566654 55667888999999999864
Q ss_pred c
Q psy16206 221 D 221 (821)
Q Consensus 221 ~ 221 (821)
+
T Consensus 215 P 215 (287)
T 3bbl_A 215 G 215 (287)
T ss_dssp T
T ss_pred C
Confidence 3
No 130
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=96.91 E-value=0.00043 Score=72.45 Aligned_cols=132 Identities=29% Similarity=0.529 Sum_probs=76.6
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhh-----hhhhhhccc--
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYS-----ILFFIYTFV-- 752 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~-- 752 (821)
|+..|+..|+++.+++++|++++++...+..+|..++....|.+++..+.++..+.++. +.++ .+.|..++.
T Consensus 39 g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~ 118 (312)
T 1yae_A 39 DRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTL 118 (312)
T ss_dssp GGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEE
T ss_pred ceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHHhCCCcCEEeecceechhhcceEEecceeeec
Confidence 45689999999999999999999998888888888776788999999999887775432 2221 111111110
Q ss_pred ccccccch---hhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 753 NEAVSTRL---VAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 753 ~~~~~~r~---~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+..+..|- ....||-|.. -++ .+=.|++++..+|++++||..++++++|++.++++..+|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~----pf~---~~p~tv~~~~~~i~~~~dL~g~~~~~vg~v~~~~~~~~l 181 (312)
T 1yae_A 119 GISILYRKPNGTNPGVFSFLN----GGS---LVPRGSERMESPIDSADDLAKQTKIEYGAVEDGATMTFF 181 (312)
T ss_dssp CEEEEEEC-----------------------------------CCSHHHHHTCSSSEEECBTTSHHHHHH
T ss_pred ceEEEEeCCccccccceeeec----ccc---cCCcccccccCCCCCHHHHhhccCceEEEEeCChHHHHH
Confidence 00111110 0011221111 111 001177787899999999998766799998888877655
No 131
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=96.91 E-value=0.047 Score=57.47 Aligned_cols=196 Identities=10% Similarity=-0.011 Sum_probs=112.1
Q ss_pred cEEEEeCC--Cc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEec-CCChhHHHHHHHHHhhcCeEEEEcCCCcc
Q psy16206 2 KIVGIFGP--NE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVE-NYDSLHTAKLMCNATSEGIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~--~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~-~~~~~~a~~~a~~li~~~V~aiiGp~~s~ 75 (821)
+||++.+. +. ..+..+++-+.++ . |+++.+...+++ ..++..-.+....++.++|++||-|....
T Consensus 45 ~Igvi~~~~~~~~~~~~~~~gi~~~a~~---~------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 115 (342)
T 1jx6_A 45 KISVVYPGQQVSDYWVRNIASFEKRLYK---L------NINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTT 115 (342)
T ss_dssp EEEEEECCCSSCCHHHHHHHHHHHHHHH---T------TCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHHH---c------CCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 58999986 33 4445555554443 2 345666555533 14666666777788888999988765443
Q ss_pred h-HHHHHHHhccCCCceeee-ccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhC-C-CCEEEEEEecCC-----ch
Q psy16206 76 N-RNIIESMCQMFDIPHVEA-FWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDM-D-WDTFTIIYETHD-----NL 146 (821)
Q Consensus 76 ~-~~~v~~i~~~~~iP~is~-~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~-~-w~~v~ii~~~~~-----~~ 146 (821)
. ...+. .+...++|+|.. ...... ......+.+..+.+++...+..+++.+... | .++++++..... -.
T Consensus 116 ~~~~~~~-~~~~~~ip~V~~~~~~~~~-~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~R~ 193 (342)
T 1jx6_A 116 RHRKFVE-HVLDSTNTKLILQNITTPV-REWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRG 193 (342)
T ss_dssp TTHHHHH-HHHHHCSCEEEEETCCSCB-GGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHH
T ss_pred hHHHHHH-HHHHcCCCEEEEecCCCcc-cccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhHHH
Confidence 3 23333 345568999877 322111 000012234457777777788888888774 7 999999976543 13
Q ss_pred hHHHHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 147 VYLQQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
..+.+.+++.+ . .......... +..+-...++++.+. .++.|+ +.+...+..+++++++.|+
T Consensus 194 ~Gf~~~l~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 194 DTFIHQVNRDN-------N--FELQSAYYTKATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHH-------C--CEEEEEECCCSSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCC-------C--cEEEEEecCCCCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 34445555544 1 1222111111 111223344555443 456665 4556678889999999998
No 132
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=96.88 E-value=0.0036 Score=64.02 Aligned_cols=185 Identities=9% Similarity=-0.055 Sum_probs=106.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++++... ..+..+++-+.++ . | +++.+.+.+ ++....+....++.++|++|| .......
T Consensus 7 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g--~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiI-~~~~~~~ 72 (280)
T 3gyb_A 7 LIAVLIDDYSNPWFIDLIQSLSDVLTP---K------G--YRLSVIDSL--TSQAGTDPITSALSMRPDGII-IAQDIPD 72 (280)
T ss_dssp EEEEEESCTTSGGGHHHHHHHHHHHGG---G------T--CEEEEECSS--SSCSSSCHHHHHHTTCCSEEE-EESCC--
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHH---C------C--CEEEEEeCC--CchHHHHHHHHHHhCCCCEEE-ecCCCCh
Confidence 6899998655 3444555444332 2 2 344555523 444444566667777999999 3333333
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCc----hhHHHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDN----LVYLQQVL 153 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~----~~~~~~~~ 153 (821)
..+.. .++|+|........ ... +..+..++...++.+++.+...|.++++++...... ...+.+.+
T Consensus 73 ~~~~~----~~iPvV~~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 73 FTVPD----SLPPFVIAGTRITQ---AST---HDSVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp ----------CCCEEEESCCCSS---SCS---TTEEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhHhh----cCCCEEEECCCCCC---CCC---CCEEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 33322 89999988654311 111 234677778888889999988999999999876542 33444455
Q ss_pred HhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 154 ENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
++.+ ..+.......+ ..+....++++.+. .+++|+ +++...+..+++++++.|+.-+
T Consensus 143 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP 203 (280)
T 3gyb_A 143 RAHG----------LEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVP 203 (280)
T ss_dssp HHTT----------CCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTT
T ss_pred HHcC----------cCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCC
Confidence 5544 33322112211 12233444555444 355555 4566778889999999998644
No 133
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=96.88 E-value=0.0057 Score=64.60 Aligned_cols=140 Identities=11% Similarity=-0.048 Sum_probs=84.3
Q ss_pred HHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccc----hhhhcceeecccceeeceEEEEE
Q psy16206 446 KMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT----SERRAAVDFTMPFMTLGISILYR 521 (821)
Q Consensus 446 ~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t----~~R~~~~~fS~p~~~~~~~l~~~ 521 (821)
+-+.++.|++++++..+ +|..++.+|.+|++|+++.+.... .++.....++.++...+..++++
T Consensus 56 ~g~~~~~g~~v~~~~~~------------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 123 (346)
T 3qsl_A 56 KGFFKDEGLDVSIADFA------------GGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVS 123 (346)
T ss_dssp TTHHHHTTCEEEEEECS------------SHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEE
T ss_pred CCchHhhCCeEEEEecC------------ChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEe
Confidence 33457789999998654 789999999999999987765544 34555666777777778888999
Q ss_pred cCC--CCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecCCChHH-HHHHHHhhhc--cCC-ccc
Q psy16206 522 KPA--KKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSL-YQRMHSAMES--SRP-SVF 595 (821)
Q Consensus 522 ~~~--~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~-~~~ 595 (821)
+++ + ..+ .+.++..+..+ ....+.... ...+.+...- ... .+.
T Consensus 124 ~~~~~~-i~s-~~DL~Gk~i~~-----------------------------~~~gs~~~~~~~~~l~~~G~~~~~v~~~~ 172 (346)
T 3qsl_A 124 KKNLPG-YKG-PADLKGRKIGV-----------------------------TAPGSSTNMVVNFFLAKHGLKASDVSFIG 172 (346)
T ss_dssp TTTCTT-CCS-GGGGTTCEEEE-----------------------------SSTTSHHHHHHHHHHHHTTCCGGGSEEEE
T ss_pred cCcccC-CCC-hHHcCCCEEEE-----------------------------CCCCcHHHHHHHHHHHHcCCCHHHeEEEe
Confidence 875 3 233 23334332221 000000000 0111111100 011 124
Q ss_pred ccCchhHHHHHHhccCceEEEecccchhhhhhhc
Q psy16206 596 VKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN 629 (821)
Q Consensus 596 ~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~ 629 (821)
+.+..+.+.++.+ |++|+++...........+.
T Consensus 173 ~~~~~~~~~al~~-G~vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 173 VGAGAGAVTALRS-GQIDAISNTDPVVSMLETSG 205 (346)
T ss_dssp CCSSHHHHHHHHH-TSCSEEEEETTHHHHHHHTT
T ss_pred cCCcHHHHHHHHc-CCccEEEecchhHHHHHhCC
Confidence 4456788999998 99999999877776555544
No 134
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=96.83 E-value=0.032 Score=57.35 Aligned_cols=192 Identities=10% Similarity=-0.004 Sum_probs=107.4
Q ss_pred cEEEEeCC-----Cc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCC
Q psy16206 2 KIVGIFGP-----NE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQS 73 (821)
Q Consensus 2 ~IG~i~~~-----~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~ 73 (821)
+||++++. +. ..+..+++-+.++ . |+.+.+...+ + .....+....+..++|++||-...
T Consensus 8 ~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~---~------g~~~~~~~~~-~---~~~~~~~~~~l~~~~vdGiIi~~~ 74 (294)
T 3qk7_A 8 AIALAYPSRPRVLNNSTFLEMISWIGIELGK---R------GLDLLLIPDE-P---GEKYQSLIHLVETRRVDALIVAHT 74 (294)
T ss_dssp EEEEEEESCSGGGSCHHHHHHHHHHHHHHHH---T------TCEEEEEEEC-T---TCCCHHHHHHHHHTCCSEEEECSC
T ss_pred eEEEEecCCCccccChhHHHHHHHHHHHHHH---C------CCEEEEEeCC-C---hhhHHHHHHHHHcCCCCEEEEeCC
Confidence 58999972 22 3344455444433 2 3455444433 2 222223344445558888874332
Q ss_pred cchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC---c---hh
Q psy16206 74 IENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD---N---LV 147 (821)
Q Consensus 74 s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~---~---~~ 147 (821)
..... ....+...++|+|........ +.+-.+..++...+..+++.+...|.++++++..... . ..
T Consensus 75 ~~~~~-~~~~l~~~~iPvV~~~~~~~~-------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 146 (294)
T 3qk7_A 75 QPEDF-RLQYLQKQNFPFLALGRSHLP-------KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQ 146 (294)
T ss_dssp CSSCH-HHHHHHHTTCCEEEESCCCCS-------SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHH
T ss_pred CCChH-HHHHHHhCCCCEEEECCCCCC-------CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHH
Confidence 22223 334566789999988644221 1233467788888888888998899999999987653 2 33
Q ss_pred HHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 148 YLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
.+.+.+++.+ +......+... ..+..+....++++.+. .+++|+ +++...+..+++++++.|+.-+.
T Consensus 147 Gf~~al~~~g-----~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~ 215 (294)
T 3qk7_A 147 GYVQTMSEAG-----LMPLAGYLQKA--DPTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGE 215 (294)
T ss_dssp HHHHHHHTTT-----CCCCTTCEEEE--CSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTT
T ss_pred HHHHHHHHCC-----CCCChhHeecC--CCCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCC
Confidence 4444555443 00001112111 11112233445555544 456655 45667788899999999987543
No 135
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=96.73 E-value=0.015 Score=60.06 Aligned_cols=192 Identities=9% Similarity=0.031 Sum_probs=116.1
Q ss_pred cEEEEeCCCc----h-HHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcch
Q psy16206 2 KIVGIFGPNE----E-EVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~-~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~ 76 (821)
+||++.+... . .+..+++-+.++ . |+. +.+.+++ .++....+....++.++|++||-......
T Consensus 15 ~Igvi~~~~~~~~~~~~~~~gi~~~a~~---~------g~~--~~~~~~~-~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 15 TFGIITDYVSTTPYSVDIVRGIQDWANA---N------GKT--ILIANTG-GSSEREVEIWKMFQSHRIDGVLYVTMYRR 82 (301)
T ss_dssp EEEEEESSTTTCCSCHHHHHHHHHHHHH---T------TCE--EEEEECT-TCHHHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred EEEEEeCCCcCcccHHHHHHHHHHHHHH---C------CCE--EEEEeCC-CChHHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 5899998654 4 666777666554 2 333 4455533 67777677777788888888873222221
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQ 150 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~ 150 (821)
. ....+...++|+|........ .. .+..+..++...+..+++.+...|.++++++..... -...+.
T Consensus 83 ~--~~~~~~~~~iPvV~~~~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 154 (301)
T 3miz_A 83 I--VDPESGDVSIPTVMINCRPQT---RE---LLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFR 154 (301)
T ss_dssp E--CCCCCTTCCCCEEEEEEECSS---TT---SSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHH
T ss_pred H--HHHHHHhCCCCEEEECCCCCC---CC---CCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHH
Confidence 1 234456789999988543331 10 123467777788888899999999999999986543 244555
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEEEc---CCCCCChH--HHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIRQL---PPDTDDYR--PLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~~~---~~~~~d~~--~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ ..-.......- .....+-. ..++++.+. .++.|+ +++...+..+++++++.|+.-+
T Consensus 155 ~al~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP 224 (301)
T 3miz_A 155 RTTSEFG-------LTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIM-SGNDEMAIQIYIAAMALGLRIP 224 (301)
T ss_dssp HHHHHHT-------CCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEE-ESSHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHcC-------CCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCC
Confidence 5666554 11111111221 22222222 455555544 456665 4556678889999999998643
No 136
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=96.72 E-value=0.033 Score=58.89 Aligned_cols=191 Identities=10% Similarity=-0.000 Sum_probs=107.5
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++.+... ..+..+++-+.++ . |+.+ .+.+++ .++....+....++.++|++||-.......
T Consensus 68 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 135 (348)
T 3bil_A 68 TIGVIVPSLINHYFAAMVTEIQSTASK---A------GLAT--IITNSN-EDATTMSGSLEFLTSHGVDGIICVPNEECA 135 (348)
T ss_dssp CEEEEESCSSSHHHHHHHHHHHHHHHH---T------TCCE--EEEECT-TCHHHHHHHHHHHHHTTCSCEEECCCGGGH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHH---c------CCEE--EEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCCCCCh
Confidence 5899998644 3344555544433 2 3333 344533 566666666777777788888754333222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~~ 151 (821)
..+ ..+...++|+|....... . .+.+-.+..++..-+..+++.+...|.++++++..... -...+.+
T Consensus 136 ~~~-~~l~~~~iPvV~i~~~~~----~--~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 136 NQL-EDLQKQGMPVVLVDRELP----G--DSTIPTATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp HHH-HHHHHC-CCEEEESSCCS----C--C-CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred HHH-HHHHhCCCCEEEEcccCC----C--CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 333 344567999998854322 1 01122355566666778888888889999999986532 2344555
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+ . ...+. ..-+.+..+-...++++.+..+- .|++++...+..+++++++.|+.-+
T Consensus 209 al~~~g-------~-~~~~v-~~~~~~~~~~~~~~~~ll~~~~~-ai~~~nD~~A~g~~~al~~~G~~vP 268 (348)
T 3bil_A 209 ACANSK-------I-GEQLV-FLGGYEQSVGFEGATKLLDQGAK-TLFAGDSMMTIGVIEACHKAGLVIG 268 (348)
T ss_dssp HHHHTT-------C-CCCEE-ECCCSSHHHHHHHHHHHHHTTCS-EEEESSHHHHHHHHHHHHHTTCCBT
T ss_pred HHHHcC-------c-CccEE-EcCCCCHHHHHHHHHHHHcCCCC-EEEEcChHHHHHHHHHHHHcCCCCC
Confidence 555554 2 11111 11011111223345555444322 4445666778889999999998644
No 137
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=96.72 E-value=0.038 Score=58.24 Aligned_cols=190 Identities=12% Similarity=0.039 Sum_probs=112.4
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++.+... ..+..+++-+. .+. |+.+ .+.+++ .++..-.+....++.++|++||-.......
T Consensus 70 ~Ig~i~~~~~~~~~~~~~~gi~~~a---~~~------g~~~--~~~~~~-~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~ 137 (344)
T 3kjx_A 70 LVAVIIPSLSNMVFPEVLTGINQVL---EDT------ELQP--VVGVTD-YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE 137 (344)
T ss_dssp EEEEEESCSSSSSHHHHHHHHHHHH---TSS------SSEE--EEEECT-TCHHHHHHHHHHHHTTCCSEEEEECSCCCH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHHH---HHC------CCEE--EEEeCC-CCHHHHHHHHHHHHhCCCCEEEEECCCCCH
Confidence 5899988654 33344444332 222 3444 455533 677777777778888888887743222222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecC--C-----chhHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETH--D-----NLVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~--~-----~~~~~~ 150 (821)
.....+...++|+|.....+. . +....+..++..-+..+++.+...|.++++++.... . -...+.
T Consensus 138 -~~~~~l~~~~iPvV~i~~~~~----~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~ 209 (344)
T 3kjx_A 138 -AARAMLDAAGIPVVEIMDSDG----K---PVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFT 209 (344)
T ss_dssp -HHHHHHHHCSSCEEEEEECSS----C---CSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHH
T ss_pred -HHHHHHHhCCCCEEEEeCCCC----C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHH
Confidence 334456678999998842221 1 122356777777888888888888999999998764 2 134455
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEEEcCCCCCCh---HHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIRQLPPDTDDY---RPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~---~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
+.+++.+ ..+....+.....+. ...++++.+. .++.|+ +++...+..+++++++.|+.-+.
T Consensus 210 ~al~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~ 275 (344)
T 3kjx_A 210 EVLGKNG----------VEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPG 275 (344)
T ss_dssp HHHHHTT----------CCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHcC----------CCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCC
Confidence 5555554 222211111112222 2344444433 566665 55567788899999999987543
No 138
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=96.70 E-value=0.088 Score=55.71 Aligned_cols=190 Identities=13% Similarity=0.086 Sum_probs=111.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
.||++++... ..+..+++-+.++ . |+.+ .+.+++ .++....+....++.++|++||-.......
T Consensus 72 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g~~~--~~~~~~-~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~ 139 (355)
T 3e3m_A 72 FVGLLLPSLNNLHFAQTAQSLTDVLEQ---G------GLQL--LLGYTA-YSPEREEQLVETMLRRRPEAMVLSYDGHTE 139 (355)
T ss_dssp EEEEEESCSBCHHHHHHHHHHHHHHHH---T------TCEE--EEEECT-TCHHHHHHHHHHHHHTCCSEEEEECSCCCH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHH---C------CCEE--EEEeCC-CChHHHHHHHHHHHhCCCCEEEEeCCCCCH
Confidence 5899988655 3334444443333 3 3344 445533 677776677777888888887743322222
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC----c---hhHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD----N---LVYLQ 150 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~----~---~~~~~ 150 (821)
.....+...++|+|.....+. . +....+..++..-+..+++.+...|.++++++..... . ...+.
T Consensus 140 -~~~~~l~~~~iPvV~i~~~~~----~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~ 211 (355)
T 3e3m_A 140 -QTIRLLQRASIPIVEIWEKPA----H---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFK 211 (355)
T ss_dssp -HHHHHHHHCCSCEEEESSCCS----S---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHH
T ss_pred -HHHHHHHhCCCCEEEECCccC----C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHH
Confidence 233456678999998742222 1 1223567777777888888888899999999987542 1 33444
Q ss_pred HHHHhcCCCCCcCCCCCCeEE--EEEcCCC--CCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVT--IRQLPPD--TDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~--~~~~~~~--~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
+.+++.+ ..+. ......+ ..+-...++++.+. .+++|+ +++...+..+++++++.|+.-+.
T Consensus 212 ~al~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~ 278 (355)
T 3e3m_A 212 RAMREAG----------LNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPE 278 (355)
T ss_dssp HHHHHTT----------SCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTT
T ss_pred HHHHHCC----------cCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 5555544 2221 1112111 11223344444433 566655 45667788899999999986543
No 139
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=96.69 E-value=0.025 Score=59.26 Aligned_cols=195 Identities=9% Similarity=-0.016 Sum_probs=116.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE-cCCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF-GPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s~~ 76 (821)
+||++.+... ..+..+++-+.++ . | +++.+.+++ .++..-.+....++.++|++|| .|..+..
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g--~~~~~~~~~-~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~ 72 (330)
T 3uug_A 5 SVGIAMPTKSSARWIDDGNNIVKQLQE---A------G--YKTDLQYAD-DDIPNQLSQIENMVTKGVKVLVIASIDGTT 72 (330)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHHH---T------T--CEEEEEECT-TCHHHHHHHHHHHHHHTCSEEEECCSSGGG
T ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHH---c------C--CEEEEeeCC-CCHHHHHHHHHHHHHcCCCEEEEEcCCchh
Confidence 6999999765 4455555555544 2 2 344555533 7888888888889988999887 4544444
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh-------CCCCEEEEEEecCC-----
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND-------MDWDTFTIIYETHD----- 144 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~-------~~w~~v~ii~~~~~----- 144 (821)
.......+...++|+|........ . .+....+..++...++.+++.+.. .|.++++++.....
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~~~~---~--~~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~ 147 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRLIRN---S--GDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAF 147 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSCCCS---C--TTCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCC---C--CceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHH
Confidence 444555677889999998644321 1 122234566777788888888877 68889999975443
Q ss_pred -chhHHHHHHHhcCCCCCcCCC-CCCeEEEEE-----c-CCC--CCChHHHHHHhhc-----CCCcEEEEeCChhHHHHH
Q psy16206 145 -NLVYLQQVLENAHDDDKEIRP-GRPSVTIRQ-----L-PPD--TDDYRPLLKEIKN-----SSESHILLDCSMDKTVTI 209 (821)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~~~-~g~~v~~~~-----~-~~~--~~d~~~~l~~lk~-----~~~~~ivl~~~~~~~~~~ 209 (821)
-..++.+.+++.. . .++.+.... + ..+ ..+-...++++.+ ..++.|+ +.+...+..+
T Consensus 148 ~R~~Gf~~al~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd~~A~g~ 219 (330)
T 3uug_A 148 FFYDGAMSVLKPYI-------DSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVL-SPYDGLSIGI 219 (330)
T ss_dssp HHHHHHHHHHHHHH-------HHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSHHHHHHH
T ss_pred HHHHHHHHHHHhcc-------ccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCCchHHHH
Confidence 2344455555441 0 012111000 0 011 1122333444443 3455544 4556778889
Q ss_pred HHHHHHccccCc
Q psy16206 210 LKQAKEVHLMGD 221 (821)
Q Consensus 210 l~~a~~~g~~~~ 221 (821)
++++++.|+..+
T Consensus 220 ~~al~~~g~~vP 231 (330)
T 3uug_A 220 ISSLKGVGYGTK 231 (330)
T ss_dssp HHHHHHTTCSSS
T ss_pred HHHHHHcCCCCC
Confidence 999999998654
No 140
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=96.68 E-value=0.055 Score=56.91 Aligned_cols=191 Identities=11% Similarity=0.055 Sum_probs=114.6
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEc-CCCcch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFG-PQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiG-p~~s~~ 76 (821)
.||++.+... ..+..+++-+.++ . |+. +.+.+++ .++..-.+....++.++|++||- |.....
T Consensus 64 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g~~--~~~~~~~-~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 131 (339)
T 3h5o_A 64 TVLVLIPSLANTVFLETLTGIETVLDA---A------GYQ--MLIGNSH-YDAGQELQLLRAYLQHRPDGVLITGLSHAE 131 (339)
T ss_dssp EEEEEESCSTTCTTHHHHHHHHHHHHH---T------TCE--EEEEECT-TCHHHHHHHHHHHHTTCCSEEEEECSCCCT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHH---C------CCE--EEEEeCC-CChHHHHHHHHHHHcCCCCEEEEeCCCCCH
Confidence 5899988644 4455666655544 2 334 4455533 67777777777888888888763 322222
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC-----chhHHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD-----NLVYLQQ 151 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~-----~~~~~~~ 151 (821)
.....+...++|+|.....+.. +.. .+..++..-+..+++.+...|.++++++..... -..++.+
T Consensus 132 --~~~~~l~~~~iPvV~~~~~~~~-------~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 201 (339)
T 3h5o_A 132 --PFERILSQHALPVVYMMDLADD-------GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRA 201 (339)
T ss_dssp --THHHHHHHTTCCEEEEESCCSS-------SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHH
T ss_pred --HHHHHHhcCCCCEEEEeecCCC-------CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHH
Confidence 2334566789999988432221 112 567777778888888888899999999987643 2344555
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEE-cCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
.+++.+ .......... ......+-...++++.+. .++.|+ +++...+..+++++++.|+.-+.
T Consensus 202 al~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~ 267 (339)
T 3h5o_A 202 ALDAAD-------CRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPE 267 (339)
T ss_dssp HHHHTT-------CCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHCC-------CCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 555554 1001111111 111112223445555443 456665 45667788899999999987544
No 141
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=96.66 E-value=0.017 Score=59.13 Aligned_cols=187 Identities=6% Similarity=-0.024 Sum_probs=108.6
Q ss_pred cEEEEeC-C-Cc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcch
Q psy16206 2 KIVGIFG-P-NE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~-~-~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~ 76 (821)
+||++++ . +. ..+..+++-+.++ . |+.+.+...+ .++....+....+..++|++||-......
T Consensus 13 ~Igvi~~~~~~~~~~~~~~~gi~~~a~~---~------g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 80 (289)
T 3g85_A 13 TIALYWSSDISVNIISRFLRGLQSKLAK---Q------NYNYNVVICP---YKTDCLHLEKGISKENSFDAAIIANISNY 80 (289)
T ss_dssp EEEEEEETTSCGGGHHHHHHHHHHHHHH---T------TTCSEEEEEE---ECTTCGGGCGGGSTTTCCSEEEESSCCHH
T ss_pred eEEEEeccccchHHHHHHHHHHHHHHHH---c------CCeEEEEecC---CCchhHHHHHHHHhccCCCEEEEecCCcc
Confidence 5899998 3 33 4455555555444 3 2344444333 12222223344455668998885444333
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQ 150 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~ 150 (821)
...+... ...++|+|....... .+-.+..++...++.+++.+...|.++++++..+.. -..++.
T Consensus 81 ~~~~~~~-~~~~iPvV~~~~~~~---------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 150 (289)
T 3g85_A 81 DLEYLNK-ASLTLPIILFNRLSN---------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFI 150 (289)
T ss_dssp HHHHHHH-CCCSSCEEEESCCCS---------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHH
T ss_pred cHHHHHh-ccCCCCEEEECCCCC---------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHH
Confidence 3333333 367899998854221 123577788888888999998899999999987643 234455
Q ss_pred HHHHhcCCCCCcCCCCCCeEE---EEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVT---IRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~---~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
+.+++.+ ..+. ...-.....+....++++.+. .++.|+ +++...+..+++++++.|+.-+
T Consensus 151 ~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP 215 (289)
T 3g85_A 151 ETCHKNG----------IKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIP 215 (289)
T ss_dssp HHHHHTT----------CBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcC----------CCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCC
Confidence 5555554 2221 111111122334455555554 456665 4566778889999999998644
No 142
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=96.62 E-value=0.1 Score=53.28 Aligned_cols=196 Identities=10% Similarity=-0.016 Sum_probs=107.1
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEE--ecCCChhHHHHHHHHHhhcCeEEEE-cCCCc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQH--VENYDSLHTAKLMCNATSEGIAAIF-GPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D--~~~~~~~~a~~~a~~li~~~V~aii-Gp~~s 74 (821)
+||++.+... ..+..+++-+.++. |+.+ .+.+ ++ .++..-.+....++.++|++|| .|...
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~---------g~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~vdgiIi~~~~~ 70 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL---------GVSV--DIFASPSE-GDFQSQLQLFEDLSNKNYKGIAFAPLSS 70 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH---------TCCE--EEEECSST-TCHHHHHHHHHHHHTSSEEEEEECCSSS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc---------CCEE--EEeCCCCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 6899988644 34445555554442 2233 3344 23 5666656666777878999977 34433
Q ss_pred ch-HHHHHHHhccCCCceeeeccCCCCCCC--CCCCccEEEEecChhhHHHHHHHHHHhC-C--CCEEEEEEecCC---c
Q psy16206 75 EN-RNIIESMCQMFDIPHVEAFWDPNKYFI--PTNGVHGVNVYPESHLISKGISVIINDM-D--WDTFTIIYETHD---N 145 (821)
Q Consensus 75 ~~-~~~v~~i~~~~~iP~is~~~~~~~~~~--~~~~~~~~r~~p~~~~~~~al~~~~~~~-~--w~~v~ii~~~~~---~ 145 (821)
.. ...+. .+...++|+|........ .. ....++.-.+..++..-++.+++.+... | .++++++..... .
T Consensus 71 ~~~~~~~~-~~~~~~iPvV~~~~~~~~-~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~ 148 (288)
T 1gud_A 71 VNLVMPVA-RAWKKGIYLVNLDEKIDM-DNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASG 148 (288)
T ss_dssp STTHHHHH-HHHHTTCEEEEESSCCCH-HHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHH
T ss_pred HHHHHHHH-HHHHCCCeEEEECCCCCc-ccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchH
Confidence 32 23333 345578999988543221 00 0000111346677777777788877776 8 899999986543 2
Q ss_pred hhHHHHHHHhcCCCCCcCCCC-CCeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 146 LVYLQQVLENAHDDDKEIRPG-RPSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~-g~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
..+.+.+.+.+. .. |+.+....... ...+-...++++.+. .++.|+ +.+...+.-+++++++.|+.
T Consensus 149 ~~R~~Gf~~al~-------~~~g~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~ 218 (288)
T 1gud_A 149 EARRNGATEAFK-------KASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIY-CANDTMAMGVAQAVANAGKT 218 (288)
T ss_dssp HHHHHHHHHHHH-------TCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHH-------hCCCcEEEEeecCCccHHHHHHHHHHHHHhCCCceEEE-ECCCchHHHHHHHHHhcCCC
Confidence 233333333332 22 44433221111 111223344554443 355555 45566788899999999985
No 143
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=96.60 E-value=0.044 Score=54.81 Aligned_cols=178 Identities=9% Similarity=-0.022 Sum_probs=105.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCC-Ccch
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQ-SIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~-~s~~ 76 (821)
+||++.+... ..+..+++-+.++ . |+. +.+.+++ .++..-.+....++.++|++||-.. ....
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~---~------g~~--~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 71 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYE---Q------GYD--PIMMESQ-FSPQLVAEHLGVLKRRNIDGVVLFGFTGIT 71 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHH---H------TCE--EEEEECT-TCHHHHHHHHHHHHTTTCCEEEEECCTTCC
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHH---c------CCE--EEEEeCC-CcHHHHHHHHHHHHhcCCCEEEEecCcccc
Confidence 5899998644 3444555554443 2 233 3444533 5666656666777777888877432 2222
Q ss_pred HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEec--CC--c---hhHH
Q psy16206 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYET--HD--N---LVYL 149 (821)
Q Consensus 77 ~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~--~~--~---~~~~ 149 (821)
. ......++|+|...... + .+-.+..++...++.+++.+...|.++++++... +. . ...+
T Consensus 72 ~----~~l~~~~~pvV~~~~~~-----~----~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 138 (255)
T 1byk_A 72 E----EMLAHWQSSLVLLARDA-----K----GFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAY 138 (255)
T ss_dssp T----TTSGGGSSSEEEESSCC-----S----SCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHH
T ss_pred H----HHHHhcCCCEEEEcccc-----C----CCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHH
Confidence 1 23445689999875321 1 1335667777778888888888899999999854 21 2 3344
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChH---HHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYR---PLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~---~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
.+.+++.+ ..+.. +.. ..+.. ..++++.+..+++|+ +++...+..+++++++.|+
T Consensus 139 ~~al~~~g----------~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~~~g~ 196 (255)
T 1byk_A 139 LAFCKAHK----------LHPVA--ALP-GLAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHHHHHTT----------CCCEE--ECC-CSCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC----------CCcce--eec-CCccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHHHcCC
Confidence 55555544 32221 111 22333 333444444567665 4556678889999999998
No 144
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=96.48 E-value=0.026 Score=58.36 Aligned_cols=187 Identities=13% Similarity=0.077 Sum_probs=107.4
Q ss_pred cEEEEeCC-----Cc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCC
Q psy16206 2 KIVGIFGP-----NE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQ 72 (821)
Q Consensus 2 ~IG~i~~~-----~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~ 72 (821)
+||++++. .. ..+..+++-+.++ . |++ +.+.+++ .++....+....+..++|++||-..
T Consensus 24 ~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~---~------g~~--~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~ 91 (305)
T 3huu_A 24 TIGLIQKSSAPEIRQNPFNSDVLNGINQACNV---R------GYS--TRMTVSE-NSGDLYHEVKTMIQSKSVDGFILLY 91 (305)
T ss_dssp EEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH---H------TCE--EEECCCS-SHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred EEEEEeCCCccccccCcHHHHHHHHHHHHHHH---C------CCE--EEEEeCC-CChHHHHHHHHHHHhCCCCEEEEeC
Confidence 58999987 22 3444555554444 2 223 3444423 4555555556666667998877332
Q ss_pred CcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------ch
Q psy16206 73 SIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NL 146 (821)
Q Consensus 73 ~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~ 146 (821)
..... .....+...++|+|....... . +.+..+..++..-+..+++.+...|.++++++..... -.
T Consensus 92 ~~~~~-~~~~~l~~~~iPvV~i~~~~~----~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 163 (305)
T 3huu_A 92 SLKDD-PIEHLLNEFKVPYLIVGKSLN----Y---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRS 163 (305)
T ss_dssp CBTTC-HHHHHHHHTTCCEEEESCCCS----S---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHH
T ss_pred CcCCc-HHHHHHHHcCCCEEEECCCCc----c---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHHH
Confidence 22222 233456678999998854332 1 1233467777778888888998899999999987653 23
Q ss_pred hHHHHHHHhcCCCCCcCCCCCCeEE-EEEcCCCCCChHHHHHHh-hcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 147 VYLQQVLENAHDDDKEIRPGRPSVT-IRQLPPDTDDYRPLLKEI-KNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~d~~~~l~~l-k~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
..+.+.+++.+ ..+. ...-.. .. ....++++ .+. .++.|+ +++...+..+++++++.|+.-+
T Consensus 164 ~Gf~~~l~~~g----------~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP 229 (305)
T 3huu_A 164 VGFKQYCDDVK----------ISNDCVVIKSM-ND-LRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIP 229 (305)
T ss_dssp HHHHHHHHHTT----------CCCCEEEECSH-HH-HHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcC----------CCcccEEecCc-HH-HHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCC
Confidence 44455555554 2222 111111 11 33444555 333 566665 4566778889999999998644
No 145
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=96.42 E-value=0.059 Score=54.72 Aligned_cols=140 Identities=9% Similarity=-0.087 Sum_probs=82.2
Q ss_pred CeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecC
Q psy16206 64 GIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETH 143 (821)
Q Consensus 64 ~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~ 143 (821)
+|++||-.........+. .+...++|+|........ +.+..+..++...+..+++.+...|.++++++..+.
T Consensus 57 ~vdgiI~~~~~~~~~~~~-~l~~~~iPvV~~~~~~~~-------~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~ 128 (277)
T 3cs3_A 57 MVDGAIILDWTFPTKEIE-KFAERGHSIVVLDRTTEH-------RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPE 128 (277)
T ss_dssp TCSEEEEECTTSCHHHHH-HHHHTTCEEEESSSCCCS-------TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCT
T ss_pred cccEEEEecCCCCHHHHH-HHHhcCCCEEEEecCCCC-------CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCc
Confidence 677766422222223333 345589999988543221 124567778777788888888888999999998664
Q ss_pred C---c---hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcC---CCcEEEEeCChhHHHHHHHHHH
Q psy16206 144 D---N---LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNS---SESHILLDCSMDKTVTILKQAK 214 (821)
Q Consensus 144 ~---~---~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~---~~~~ivl~~~~~~~~~~l~~a~ 214 (821)
. . ...+.+.+++.+ +.+....-..+..+-...++++.+. .+++|+ +.+...+..++++++
T Consensus 129 ~~~~~~~R~~gf~~~l~~~g----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~ 197 (277)
T 3cs3_A 129 KGYDSQERLAVSTRELTRFG----------IPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVA 197 (277)
T ss_dssp TSHHHHHHHHHHHHHHHHTT----------CCEEEEECCSSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHT
T ss_pred cCccHHHHHHHHHHHHHHcC----------CCeeEEeCCCChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHH
Confidence 3 2 334444444443 4443211111112233455666554 455554 455667888999999
Q ss_pred HccccCcc
Q psy16206 215 EVHLMGDY 222 (821)
Q Consensus 215 ~~g~~~~~ 222 (821)
+.|+.-+.
T Consensus 198 ~~g~~vP~ 205 (277)
T 3cs3_A 198 ETNYQMGK 205 (277)
T ss_dssp TSSCCBTT
T ss_pred HcCCCCCC
Confidence 99986443
No 146
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=96.34 E-value=0.066 Score=56.11 Aligned_cols=181 Identities=7% Similarity=-0.062 Sum_probs=108.6
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchH
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENR 77 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~ 77 (821)
+||++.+... ..+..+++-+.++. |+ ++.+.+++ . +....+....++.++|++||-...
T Consensus 66 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~---------g~--~~~~~~~~-~-~~~~~~~~~~l~~~~vdGiIi~~~---- 128 (333)
T 3jvd_A 66 LVGVIVPDLSNEYYSESLQTIQQDLKAA---------GY--QMLVAEAN-S-VQAQDVVMESLISIQAAGIIHVPV---- 128 (333)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH---------TC--EEEEEECC-S-HHHHHHHHHHHHHHTCSEEEECCC----
T ss_pred EEEEEeCCCcChHHHHHHHHHHHHHHHC---------CC--EEEEECCC-C-hHHHHHHHHHHHhCCCCEEEEcch----
Confidence 5899998655 34455555555442 22 44455533 3 555555666677779988885433
Q ss_pred HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHHHH
Q psy16206 78 NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYLQQ 151 (821)
Q Consensus 78 ~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~~~ 151 (821)
...+...++|+|........ +.+-.+..++...+..+++.+...|.++++++..... -..++.+
T Consensus 129 ---~~~~~~~~iPvV~~~~~~~~-------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 ---VGSIAPEGIPMVQLTRGELG-------PGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp ---TTCCC-CCSCEEEECC-----------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred ---HHHHhhCCCCEEEECccCCC-------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 23456789999988543221 1223456777778888888888899999999987643 2444455
Q ss_pred HHHhcCCCCCcCCCCCCeEEEEE-cCCCCCChHHHHHHhhcCC-CcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 152 VLENAHDDDKEIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNSS-ESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~~-~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
.+++.+ .. .... -..+..+....++++.+.. ++.|+ +++...+..+++++++.|+.-+
T Consensus 199 al~~~g----------~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP 258 (333)
T 3jvd_A 199 AASIYG----------AE-VTFHFGHYSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVP 258 (333)
T ss_dssp HHHHTT----------CE-EEEEECCSSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHCC----------CC-EEEecCCCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCC
Confidence 555554 33 2122 1111223334455554443 56665 4556778889999999998644
No 147
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=96.33 E-value=0.02 Score=59.96 Aligned_cols=138 Identities=12% Similarity=-0.043 Sum_probs=75.2
Q ss_pred HHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccc-hhhhc----ceeecccceeeceEEEE
Q psy16206 447 MIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT-SERRA----AVDFTMPFMTLGISILY 520 (821)
Q Consensus 447 ~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t-~~R~~----~~~fS~p~~~~~~~l~~ 520 (821)
.+.+++ |++++++.++ ++..++.+|..|++|+++.+.... ..+.+ .+..+.++...+..+++
T Consensus 50 ~~~~~~~g~~v~~~~~~------------~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv 117 (324)
T 3ksx_A 50 LLEQRFPRTKITWVEFP------------AGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTPKAETILV 117 (324)
T ss_dssp HHHHHCTTSEEEEEEES------------SHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEEECCCGGGEEEEE
T ss_pred HHHHhcCCCceEEEECC------------CHHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEEEecCCCCceEEEE
Confidence 344555 8999999765 688999999999999986533211 12222 22223344445688999
Q ss_pred EcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecCCChHHHHHHHHhhh--ccCCcccccC
Q psy16206 521 RKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAME--SSRPSVFVKS 598 (821)
Q Consensus 521 ~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 598 (821)
+++++ ..++ ..++..+..+. .++.. ......+++... ........-+
T Consensus 118 ~~~s~-I~s~-~DLkGk~i~v~-------~gs~~----------------------~~~~~~~l~~~Gl~~~~v~~v~~~ 166 (324)
T 3ksx_A 118 PSKSA-LRTV-ADLKGKRIAFQ-------KGSSA----------------------HNLLLRVLAKSGLSMRDITPLYLS 166 (324)
T ss_dssp ETTCS-CCSG-GGGTTCEEEEC-------TTSHH----------------------HHHHHHHHHHTTCCGGGSEEEECC
T ss_pred eCCCC-CCCH-HHhCCCEEEec-------CCChH----------------------HHHHHHHHHHcCCCHHHeEEEeCC
Confidence 98765 3333 33443332221 00000 000011111110 0011111225
Q ss_pred chhHHHHHHhccCceEEEecccchhhhhhh
Q psy16206 599 NKEGVERVVKEKGKYAFFMESTGIEYEVEK 628 (821)
Q Consensus 599 ~~~~~~~v~~~g~~da~i~~~~~~~~~~~~ 628 (821)
..+++.++.+ |++|+++...........+
T Consensus 167 ~~~~~~al~~-G~vDa~~~~~p~~~~~~~~ 195 (324)
T 3ksx_A 167 PANARAAFAA-GQVDAWAIWDPWYSALTLD 195 (324)
T ss_dssp HHHHHHHHHT-TCCSEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHc-CCCCEEEEccHHHHHHHhc
Confidence 6788889988 9999998887777665554
No 148
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=96.14 E-value=0.12 Score=54.51 Aligned_cols=189 Identities=8% Similarity=-0.026 Sum_probs=103.3
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEE--cCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIF--GPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aii--Gp~~s~ 75 (821)
.||++.+.-. ..+..+++-+.++ . |+.+. +.+++..++..-.+....++.++|++|| +|....
T Consensus 63 ~Igvi~~~~~~~~~~~~~~gi~~~a~~---~------g~~~~--~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~ 131 (349)
T 1jye_A 63 LIGVATSSLALHAPSQIVAAILSRADQ---L------GASVV--VSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQ 131 (349)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH---T------TCEEE--EEECCSSSHHHHHHHHHHHHTTTCSCEEEESCCCHH
T ss_pred EEEEEeCCCCcccHHHHHHHHHHHHHH---c------CCEEE--EEeCCCCcHHHHHHHHHHHHHCCCCEEEEecCCCCh
Confidence 5899988544 3344444444332 2 33443 4443322344444556667777888776 443322
Q ss_pred hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC------chhHH
Q psy16206 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD------NLVYL 149 (821)
Q Consensus 76 ~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~------~~~~~ 149 (821)
..+...+...++|+|....... . ..+ .+..++..-+...++.+...|.++++++..... -..++
T Consensus 132 --~~~~~~~~~~~iPvV~i~~~~~----~-~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf 201 (349)
T 1jye_A 132 --DAIAVEAACTNVPALFLDVSDQ----T-PIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGW 201 (349)
T ss_dssp --HHHHHHHHTTTSCEEESSSCTT----S-SSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHH
T ss_pred --hHHHHHHhhCCCCEEEEcccCC----C-CCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHH
Confidence 2222334457899998753211 1 122 355666666777778887789999999986543 13445
Q ss_pred HHHHHhcCCCCCcCCCCCCeEEEEEcCC-CCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 150 QQVLENAHDDDKEIRPGRPSVTIRQLPP-DTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
.+.+++.+ +.+....... ...+-...+.++.+. .++.|+. ++...+..+++++++.|+.-+.
T Consensus 202 ~~al~~~g----------i~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~ 266 (349)
T 1jye_A 202 HKYLTRNQ----------IQPIAEREGDWSAMSGFQQTMQMLNEGIVPTAMLV-ANDQMALGAMRAITESGLRVGA 266 (349)
T ss_dssp HHHHHHTT----------CCCSEEEECCSSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCBTT
T ss_pred HHHHHHcC----------CCccccccCCCChHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCC
Confidence 55555554 2211111111 111112344444433 4666654 4566788899999999986443
No 149
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=96.11 E-value=0.021 Score=59.03 Aligned_cols=77 Identities=10% Similarity=-0.013 Sum_probs=58.4
Q ss_pred ce-eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEec-cccchhhhc---ceeecccc
Q psy16206 437 LY-GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICD-LTITSERRA---AVDFTMPF 511 (821)
Q Consensus 437 ~~-G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~-~~~t~~R~~---~~~fS~p~ 511 (821)
.+ |+.+.+.+-+.++.|++++++... ....++.+|.+|++|+++++ ......|.+ ...++.++
T Consensus 16 ~~~~~~va~~~g~~~~~Gl~v~~~~~~------------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~ 83 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEGLDVDIVFPT------------NPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVV 83 (302)
T ss_dssp GGHHHHHHHHTTHHHHTTEEEEEECCS------------STTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccHHHHHHHHcChHHHcCCcEEEecCC------------CCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEe
Confidence 45 999999999999999999998542 44589999999999999876 333344444 44555666
Q ss_pred eeeceEEEEEcCCC
Q psy16206 512 MTLGISILYRKPAK 525 (821)
Q Consensus 512 ~~~~~~l~~~~~~~ 525 (821)
...+..+++++++.
T Consensus 84 ~~~~~~l~~~~~s~ 97 (302)
T 3ix1_A 84 RSPLNHVMFLAEQD 97 (302)
T ss_dssp CSCCEEEEEEGGGC
T ss_pred ccCCEEEEEECCCC
Confidence 66788999998754
No 150
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=96.06 E-value=0.0037 Score=62.97 Aligned_cols=117 Identities=29% Similarity=0.547 Sum_probs=80.0
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++++|++++++...+..++..++.+..|.+++..+.++..+.++. +.++-- +..-..++..
T Consensus 30 g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~e----R~~~~~fs~p 105 (259)
T 3g3k_A 30 DRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYV----REEVIDFSKP 105 (259)
T ss_dssp GGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECSSCBCCHH----HHTTEEECSC
T ss_pred ceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHhcCcccEEEeeeEeccc----ccceEeeeee
Confidence 56789999999999999999999999888778877766778999999999987775432 221100 0000011111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+....+. ++ +++ ..+|++++||..++.+++|++.++++..+|
T Consensus 106 y~~~~~~----------------~~-~~~-~~~i~~~~dL~g~~~~~ig~~~~~~~~~~~ 147 (259)
T 3g3k_A 106 FMTLGIS----------------IL-YRK-GTPIDSADDLAKQTKIEYGAVEDGATMTFF 147 (259)
T ss_dssp SEEECEE----------------EE-EES-SSSCCSHHHHHTCSSSEEEEETTSHHHHHH
T ss_pred eeeCCEE----------------EE-EeC-CccccCHHHhccCCCceEEEecCcHHHHHH
Confidence 1111111 12 233 357999999998778889999998887665
No 151
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=95.99 E-value=0.63 Score=48.17 Aligned_cols=195 Identities=8% Similarity=-0.021 Sum_probs=103.9
Q ss_pred CcEEEEeC---CCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCC
Q psy16206 1 MKIVGIFG---PNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQS 73 (821)
Q Consensus 1 i~IG~i~~---~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~ 73 (821)
.+||++++ .+. ..+..+++-+.++ . |++ +.+..+. .+ ....+....++.+++++||....
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~----~-----g~~--~~~~~~~-~~-~~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQE----N-----NAK--CKYVTAS-TD-AEYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHH----T-----TCE--EEEEECC-SG-GGHHHHHHHHHHTTCSEEEEEST
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHH----h-----CCe--EEEEeCC-CH-HHHHHHHHHHHHcCCCEEEECCh
Confidence 37999997 222 3334444444433 1 233 3444422 22 23345677788889999986543
Q ss_pred cchHHHHHHHhcc-CCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHH----HHHHHhCCC-CEEEEEEecCC---
Q psy16206 74 IENRNIIESMCQM-FDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGI----SVIINDMDW-DTFTIIYETHD--- 144 (821)
Q Consensus 74 s~~~~~v~~i~~~-~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al----~~~~~~~~w-~~v~ii~~~~~--- 144 (821)
.. ..++..++.. .++|++....... . .+.+-...... .++..+ +..+...|. +++++|...+.
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~----~--~~~~~~v~~d~-~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~ 143 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQ----D--RDNVVSAVFGQ-NEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMM 143 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCC----S--CTTEEEEEECH-HHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTT
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccC----C--CCCEEEEEech-HHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHH
Confidence 22 2234555554 3899987753221 0 12233333443 344433 456666776 89999975432
Q ss_pred --chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCC---hHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 145 --NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDD---YRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d---~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
....+.+.+++.+ . ...+... +..+-.+ -....+++.+.++++|+.. ....+.-+++++++.|+.
T Consensus 144 ~~r~~Gf~~~~~~~~-------~-~~~~~~~-~~~~~~~~~~g~~~a~~ll~~~~daI~~~-~d~~a~Gv~~a~~e~g~~ 213 (318)
T 2fqx_A 144 PLFEAGFEAGVKAVD-------P-DIQVVVE-VANTFSDPQKGQALAAKLYDSGVNVIFQV-AGGTGNGVIKEARDRRLN 213 (318)
T ss_dssp HHHHHHHHHHHHHHC-------T-TCEEEEE-ECSCSSCHHHHHHHHHHHHHTTCCEEEEE-CGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC-------C-CCEEEEE-EccCccCHHHHHHHHHHHHHCCCcEEEEC-CCCCchHHHHHHHhhhhc
Confidence 2444555555554 2 1223222 2221122 2344566666678876644 455677789999999987
Q ss_pred CcceEEEE
Q psy16206 220 GDYQNYIL 227 (821)
Q Consensus 220 ~~~~~~i~ 227 (821)
+.-.+++
T Consensus 214 -P~dv~vi 220 (318)
T 2fqx_A 214 -GQDVWVI 220 (318)
T ss_dssp -TCCCEEE
T ss_pred -cCCcEEE
Confidence 4434544
No 152
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=95.97 E-value=0.02 Score=60.64 Aligned_cols=72 Identities=7% Similarity=-0.037 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccc----hhhhcceeecccceeeceEEE
Q psy16206 444 LIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT----SERRAAVDFTMPFMTLGISIL 519 (821)
Q Consensus 444 ll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t----~~R~~~~~fS~p~~~~~~~l~ 519 (821)
+.+.+++. |+++++++..- .+++..++.+|..|++|+++.+.... .++.....++.++...+..++
T Consensus 35 l~~~~~~~-G~~v~~~~~~~---------~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lv 104 (348)
T 3uif_A 35 FPEELRKQ-GIKVEWVPAAM---------ASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLV 104 (348)
T ss_dssp HHHHHHHT-TEEEEEEEECT---------TCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEE
T ss_pred HHHHHHhc-CCeEEEEeccc---------CCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEE
Confidence 44566665 99999954320 23567799999999999997544433 344455556667778888999
Q ss_pred EEcCCC
Q psy16206 520 YRKPAK 525 (821)
Q Consensus 520 ~~~~~~ 525 (821)
++++++
T Consensus 105 v~~~s~ 110 (348)
T 3uif_A 105 VPKNST 110 (348)
T ss_dssp EETTCC
T ss_pred EECCCC
Confidence 998765
No 153
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=95.96 E-value=0.013 Score=61.98 Aligned_cols=188 Identities=11% Similarity=0.068 Sum_probs=101.2
Q ss_pred HHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccch-hhhcceeeccc--ceeeceEEEEEcCC
Q psy16206 448 IANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITS-ERRAAVDFTMP--FMTLGISILYRKPA 524 (821)
Q Consensus 448 ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~-~R~~~~~fS~p--~~~~~~~l~~~~~~ 524 (821)
+.++.|++++++..+ +|..++.+|..|++|+++.+..... .|.+..++... ....+..+++++++
T Consensus 76 ~~~~~G~~Ve~~~~~------------~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ivv~~~s 143 (341)
T 3un6_A 76 QYNHPKYKLELVKFN------------NWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGM 143 (341)
T ss_dssp TSSSCSSEEEEEECS------------SHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEESCEECEEEEESTTC
T ss_pred hHHHcCCcEEEEEcC------------CHHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEeecCCCceEEEEcCCC
Confidence 346779999998754 7999999999999999977665543 35554444331 22467788888765
Q ss_pred CCCCCccccc-ccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecCCChHHH-HHHHHhhhc--cCCcccccCch
Q psy16206 525 KKQPDLFSFL-EPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLY-QRMHSAMES--SRPSVFVKSNK 600 (821)
Q Consensus 525 ~~~~~~~~~l-~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~ 600 (821)
. ..++ +.+ +..+..+ ....+..... ..+++...- .......-+..
T Consensus 144 ~-I~s~-~DL~kGk~i~v-----------------------------~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~~~~ 192 (341)
T 3un6_A 144 H-LNEF-NNNGDDYHFGI-----------------------------PHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPA 192 (341)
T ss_dssp C-GGGC-CSSSSCEEEEE-----------------------------SCSSSHHHHHHHHHHHHTTCCTTSEEEEECCGG
T ss_pred C-CCCH-HHhCCCCEEEE-----------------------------CCCCCHHHHHHHHHHHHcCCCHHHeEEEEcChH
Confidence 4 2222 222 3222111 1111111000 111111110 01111122466
Q ss_pred hHHHHHHhccCceEEEecccchhhhhhhcCCceee-ccee-cCC-CcccccCC------c----hhhcccccceeEEEEe
Q psy16206 601 EGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQV-GGLL-DSK-GYGIAMPT------S----KFLAKFSFGFAKLRVL 667 (821)
Q Consensus 601 ~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~-~~~~-~~~-~~~~a~~k------~----~l~~~in~al~~l~~~ 667 (821)
+++.++.+ |++|+++...........+.....+. .... ... ...+++++ + .+++.+++++..+.+
T Consensus 193 ~~~~al~~-G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~- 270 (341)
T 3un6_A 193 EMPAALSE-HRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMND- 270 (341)
T ss_dssp GHHHHHHT-TSCSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHc-CCCCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHh-
Confidence 88888888 99999999888776666554332222 1222 222 24566665 2 356666666666665
Q ss_pred ecCCccccccCCCC
Q psy16206 668 FQGEPYMMKNPETG 681 (821)
Q Consensus 668 ~~g~~~~i~~k~~g 681 (821)
+++..++..+|++
T Consensus 271 -~~~~~~~~~~~~~ 283 (341)
T 3un6_A 271 -RKQSVDIMTHHFK 283 (341)
T ss_dssp -HHHHHHHHHHHSS
T ss_pred -CHHHHHHHHHHhC
Confidence 3322256566654
No 154
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=95.90 E-value=0.34 Score=52.31 Aligned_cols=191 Identities=8% Similarity=0.023 Sum_probs=105.2
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
.||++++.+. ..+..+++-+.++. |+.+.+...+ + . . +....+..++|++||-... ..
T Consensus 27 ~Igvv~~~~~~f~~~l~~gi~~~a~~~---------g~~~~i~~~~-~--~-~---~~i~~l~~~~vDGiIi~~~---~~ 87 (412)
T 4fe7_A 27 RITLLFNANKAYDRQVVEGVGEYLQAS---------QSEWDIFIEE-D--F-R---ARIDKIKDWLGDGVIADFD---DK 87 (412)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHHH---------TCCEEEEECC----C-C-----------CCCSEEEEETT---CH
T ss_pred eEEEEeCCcchhhHHHHHHHHHHHHhc---------CCCeEEEecC-C--c-c---chhhhHhcCCCCEEEEecC---Ch
Confidence 5899998655 44555555555443 2234333322 1 1 1 2244566668888885222 23
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC-----chhHHHHHH
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD-----NLVYLQQVL 153 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~-----~~~~~~~~~ 153 (821)
.+...+...++|+|........ ....+.+-.+..++..-+..+++.+...|.++++++..... ...+.+.+.
T Consensus 88 ~~~~~l~~~~iPvV~i~~~~~~---~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~Gf~ 164 (412)
T 4fe7_A 88 QIEQALADVDVPIVGVGGSYHL---AESYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFR 164 (412)
T ss_dssp HHHHHHTTCCSCEEEEEECCSS---GGGSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCEEEecCCccc---cccCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHHHH
Confidence 3445667789999988654321 11122345577788888888899999999999999986543 223444444
Q ss_pred HhcCCCCCcCCCCCCeEEEEEcC-CCCCChH---HHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCcc
Q psy16206 154 ENAHDDDKEIRPGRPSVTIRQLP-PDTDDYR---PLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGDY 222 (821)
Q Consensus 154 ~~~~~~~~~~~~~g~~v~~~~~~-~~~~d~~---~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~~ 222 (821)
+... ..|......... ....+.. ..+.++.+. .+++|+ +++...+..+++++++.|+..+.
T Consensus 165 ~al~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~ 231 (412)
T 4fe7_A 165 QLVA-------EEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPE 231 (412)
T ss_dssp HHHT-------TSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTT
T ss_pred HHHH-------HcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCc
Confidence 4443 334333222211 1122332 333333333 455554 55677788899999999986543
No 155
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=95.50 E-value=0.52 Score=49.54 Aligned_cols=187 Identities=10% Similarity=-0.002 Sum_probs=105.1
Q ss_pred CcEEEEeCCC----c--hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc
Q psy16206 1 MKIVGIFGPN----E--EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI 74 (821)
Q Consensus 1 i~IG~i~~~~----~--~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s 74 (821)
.+||++++-+ + ....+|++.+.++.+ . ++++.+.+ ...+.....+..++|+++|+..||+....
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G---~------~~~~~~~e-~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~ 96 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKELVEALG---D------KVETTFLE-NVAEGADAERSIKRIARAGNKLIFTTSFG 96 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT---T------TEEEEEEC-SCCTTHHHHHHHHHHHHTTCSEEEECSGG
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHHHHHHhC---C------ceEEEEEe-cCCCHHHHHHHHHHHHHCCCCEEEECCHH
Confidence 3799999632 1 345556665555543 1 25666665 32344456778888998999999987433
Q ss_pred chHHHHHHHhccC-CCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHH-h-CCCCEEEEEEecCC-----ch
Q psy16206 75 ENRNIIESMCQMF-DIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIN-D-MDWDTFTIIYETHD-----NL 146 (821)
Q Consensus 75 ~~~~~v~~i~~~~-~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~-~-~~w~~v~ii~~~~~-----~~ 146 (821)
...++..++..+ ++|++-...... .+.+...... ..++.-++-.+. . -.-++|++|...+. ..
T Consensus 97 -~~~~~~~vA~~~Pdv~fv~id~~~~-------~~Nv~sv~~~-~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~~~ 167 (356)
T 3s99_A 97 -YMDPTVKVAKKFPDVKFEHATGYKT-------ADNMSAYNAR-FYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQGI 167 (356)
T ss_dssp -GHHHHHHHHTTCTTSEEEEESCCCC-------BTTEEEEEEC-HHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHHHH
T ss_pred -HHHHHHHHHHHCCCCEEEEEecccc-------CCcEEEEEec-hhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHHHH
Confidence 445567777664 788876543211 1233333333 234444444321 1 12479999986543 23
Q ss_pred hHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCC---hHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHccc
Q psy16206 147 VYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDD---YRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHL 218 (821)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d---~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g~ 218 (821)
..+..-++..+ + ...+... +..+-.| -....+.|.+.++++|+...... -++++|++.|.
T Consensus 168 ~GF~~G~k~~n-------p-~i~v~~~-~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 168 NSFMLGAQSVN-------P-DFRVKVI-WVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHTTC-------T-TCEEEEE-ECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHC-------C-CCEEEEE-ECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 34444444443 2 2333322 2221123 23456667777999888766553 57899999874
No 156
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=95.25 E-value=0.013 Score=60.75 Aligned_cols=200 Identities=10% Similarity=0.079 Sum_probs=113.0
Q ss_pred eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHH--HHHHcCCcc---eEEecc--ccchhhhcceee----
Q psy16206 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLI--GELQEQRAD---LAICDL--TITSERRAAVDF---- 507 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~l~~g~~D---i~~~~~--~~t~~R~~~~~f---- 507 (821)
-+.-.+.+.+.+++|.++.+...+ ...+.+ ..+.+++.| ++++.. .+++.+...+.|
T Consensus 33 ~~aR~la~~l~~~lg~~vvV~N~p------------Ga~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~yd~~~ 100 (312)
T 2f5x_A 33 NVARSLAESMRPTLGETVVVENKG------------GAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYT 100 (312)
T ss_dssp HHHHHHHHHHHHHHSSCEEEEECC------------CGGGHHHHHHHHTSCSSSSEEEEEETHHHHGGGTCSCCSSCTTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEecC------------ChHHHHHHHHHHhCCCCCcEEEEecCHHHHHHHHcCCCCCCccc
Confidence 445577788888899988877543 355566 568889998 766533 244444333333
Q ss_pred --c--ccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecC--CChHHHH
Q psy16206 508 --T--MPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKN--SNVSLYQ 581 (821)
Q Consensus 508 --S--~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 581 (821)
+ ..+.....+++++++++ ..++.++.. +..++ |- ++.|.... +......
T Consensus 101 df~pv~~~~~~~~~lvv~~ds~-~~sl~dL~~---------------------~ak~~--p~-~~~~g~~g~Gs~~hl~~ 155 (312)
T 2f5x_A 101 SFEPIGLVVDVPMTIIARGDFP-PNNIKELAE---------------------YVKKN--AD-KISLANAGIGAASHLCG 155 (312)
T ss_dssp SEEEEEEEEEEEEEEEECTTCS-CCSHHHHHH---------------------HHHHH--GG-GCEEEESSTTSHHHHHH
T ss_pred ccceeeecccCcEEEEEeCCCC-CCCHHHHHH---------------------HHHhC--CC-ceEEeCCCCCcHHHHHH
Confidence 2 12556677788887655 333333321 00000 00 01121111 1111111
Q ss_pred HHHH-hhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeec-----------c--eecC------
Q psy16206 582 RMHS-AMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG-----------G--LLDS------ 641 (821)
Q Consensus 582 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~-----------~--~~~~------ 641 (821)
+++. ...-....+.++...+++.++.. |++|+++.+...+..+++.. +++.+. + .+..
T Consensus 156 ~~l~~~~Gi~~~~Vpy~G~~~a~~aL~~-G~VD~~~~~~~~~~~~i~~g-~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~ 233 (312)
T 2f5x_A 156 TMLVEALGVNLLTIPYKGTAPAMNDLLG-KQVDLMCDQTTNTTQQITSG-KVKAYAVTSLKRVPTLPDLPTMDESGYKGF 233 (312)
T ss_dssp HHHHHHHTCCCEEEECSSHHHHHHHHHT-TSSCEEEEEHHHHHHHHHTT-SSEEEEECSSSCCTTSTTSCBTTTTTCTTC
T ss_pred HHHHHHHCCCeEEeccCChHHHHHHHHc-CCccEEEechHHHHHHHHcC-CeEEEEEcCccchhhcCCCCCHhhcCCCCe
Confidence 2221 11111223577788899999998 99999999877776666543 232221 1 0111
Q ss_pred ---CCcccccCC---chhhcccccceeEEEEeecCCccccccCC
Q psy16206 642 ---KGYGIAMPT---SKFLAKFSFGFAKLRVLFQGEPYMMKNPE 679 (821)
Q Consensus 642 ---~~~~~a~~k---~~l~~~in~al~~l~~~~~g~~~~i~~k~ 679 (821)
..+++++|+ +++++.|+++|.++.+ ++++.+.++++
T Consensus 234 ~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~--~p~~~~~~~~~ 275 (312)
T 2f5x_A 234 EVGIWHGMWAPKGTPKPVVDKLVKSLQAGLA--DPKFQERMKQL 275 (312)
T ss_dssp CCEEEEEEEEETTCCHHHHHHHHHHHHHHHT--CHHHHHHHHHT
T ss_pred eEEEEEEEEEcCCCCHHHHHHHHHHHHHHHc--CHHHHHHHHHC
Confidence 124678888 6799999999999888 77777655544
No 157
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=95.23 E-value=2.2 Score=44.53 Aligned_cols=205 Identities=12% Similarity=0.032 Sum_probs=118.2
Q ss_pred cEEEEeCCCc--hHHHHHHHHHHHHHhcCCC--CCCC--ceEEEEEEEEecCCCh-----hHHHHHHHHHhhc-CeEEEE
Q psy16206 2 KIVGIFGPNE--EEVATAFEIAVRRINKDFK--ALPP--DIILEPIVQHVENYDS-----LHTAKLMCNATSE-GIAAIF 69 (821)
Q Consensus 2 ~IG~i~~~~~--~~~~~a~~lAv~~iN~~~~--~ll~--~~~l~~~~~D~~~~~~-----~~a~~~a~~li~~-~V~aii 69 (821)
|||++...-. ++..++++-.+++.|..+. .+-. ...+.+++.++- .|+ ..+.+...++... ++.+||
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~-pd~F~se~~ttI~~I~~~a~~~gyk~II 92 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVL-PENFTSNIDSAINKIVKLADDKEVQAIV 92 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEEC-CTTGGGGHHHHHHHHHGGGGCTTEEEEE
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEecc-CCCchHHHHHHHHHHHHHhhcCCCeEEE
Confidence 7999988655 6777888888999887442 0000 112334444422 232 2245666777777 899988
Q ss_pred cCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCC---CCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCC--
Q psy16206 70 GPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPT---NGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHD-- 144 (821)
Q Consensus 70 Gp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~---~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~-- 144 (821)
.-............+.+.+++.|-....+.. +.. .+.. +.+...+..-+...++.+...|.+++++|....+
T Consensus 93 ~n~~~~~~~~~i~~lkekrvDgIIi~~~~~e--d~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~~~ 169 (371)
T 3qi7_A 93 VSTDQAGLLPALQKVKEKRPEIITISAPMGD--DKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTDDLK 169 (371)
T ss_dssp EECSSCCCHHHHHHHHHHCTTSEEEESSCCS--CHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETTGGG
T ss_pred EECCCcchHHHHHHHHhcCCCEEEEeccccc--cchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEecccccc
Confidence 6544433244456677777777655443221 000 0011 2455555556667778999999999999986432
Q ss_pred ---c---hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcC-CCCCChHHHHHHhh---------cCCCcEEEEeCChhHHHH
Q psy16206 145 ---N---LVYLQQVLENAHDDDKEIRPGRPSVTIRQLP-PDTDDYRPLLKEIK---------NSSESHILLDCSMDKTVT 208 (821)
Q Consensus 145 ---~---~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-~~~~d~~~~l~~lk---------~~~~~~ivl~~~~~~~~~ 208 (821)
. ...+++++++.+ +.......+ +..++-....+++. ..+..--|++++...+..
T Consensus 170 ~~~~~~R~~Gyk~Al~e~G----------i~~~~~~~~d~t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG 239 (371)
T 3qi7_A 170 DVNIAKRLEMIKETCKNIG----------LPFVQVNTPNINTEEDKNKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEV 239 (371)
T ss_dssp SHHHHHHHHHHHHHHHHTT----------CCEEEEEECCCSSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEESSHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcC----------CCceeecCCCCchHHHHHHHHHHHhccccchhhccCCCcEEEECCHHHHHH
Confidence 1 233445555554 555433322 22222223333322 223334556778888999
Q ss_pred HHHHHHHccccC
Q psy16206 209 ILKQAKEVHLMG 220 (821)
Q Consensus 209 ~l~~a~~~g~~~ 220 (821)
+++++.++|+.-
T Consensus 240 ~ikal~e~Gi~V 251 (371)
T 3qi7_A 240 ILTKALELKYIV 251 (371)
T ss_dssp HHHHHHHHCCBB
T ss_pred HHHHHHHcCCcc
Confidence 999999999753
No 158
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=95.03 E-value=0.12 Score=53.94 Aligned_cols=78 Identities=9% Similarity=0.116 Sum_probs=55.6
Q ss_pred Cce-eeHHHHHHHHHHH----cCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccch-hh--------
Q psy16206 436 ELY-GYSVDLIKMIANE----LNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITS-ER-------- 501 (821)
Q Consensus 436 ~~~-G~~~dll~~ia~~----l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~-~R-------- 501 (821)
+.+ .+...+.+.+.+. .|++++++.. +...+.+.++.+|++|+++....... .+
T Consensus 43 G~~~~~~~~la~~l~~~~~~~~g~~v~v~~~------------~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f~~ 110 (327)
T 4ddd_A 43 GVYYPIGGSICRFIASDYGKDNKIICSISST------------TGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEK 110 (327)
T ss_dssp SSHHHHHHHHHHHHHHHHGGGTSEEEEEECC------------CCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGGGTT
T ss_pred CHHHHHHHHHHHHHHhccCCCCCeEEEEEec------------CcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcCcccc
Confidence 355 6777888888887 7888888742 24677889999999999876544321 11
Q ss_pred ---hcceeecccceeeceEEEEEcCCC
Q psy16206 502 ---RAAVDFTMPFMTLGISILYRKPAK 525 (821)
Q Consensus 502 ---~~~~~fS~p~~~~~~~l~~~~~~~ 525 (821)
.+.+.+..+++.....++++++++
T Consensus 111 ~~~~~d~~~v~~~~~~~~~lvv~~ds~ 137 (327)
T 4ddd_A 111 MLPMDNLRMLASLHKEYLTIVVKKSSN 137 (327)
T ss_dssp SCCCTTEEEEEEEEEEEEEEEEETTSS
T ss_pred cCCCcchhehhccCCccEEEEEECCCC
Confidence 234555567888889999998765
No 159
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=94.95 E-value=0.12 Score=53.84 Aligned_cols=73 Identities=11% Similarity=0.063 Sum_probs=46.6
Q ss_pred eHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcch-HHHHHHHcCCcceEEeccc-cchhhhccee-ec--ccceee
Q psy16206 440 YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWN-GLIGELQEQRADLAICDLT-ITSERRAAVD-FT--MPFMTL 514 (821)
Q Consensus 440 ~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~g~~Di~~~~~~-~t~~R~~~~~-fS--~p~~~~ 514 (821)
+.+-.-+-+.++.|++++++..+ ... .++.+|.+|++|+++.+.. ....|.+..+ |. .++...
T Consensus 30 ~~~A~~~G~~~~~Gl~V~~~~~~------------~g~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~ 97 (321)
T 2x7q_A 30 LFFAQQQGYYKAHDLSIEFVKVP------------EGSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKS 97 (321)
T ss_dssp HHHHHHTTHHHHTTCCEEEEECT------------TCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECS
T ss_pred HHHHHHCCcHHHCCceEEEEECC------------CCHHHHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCC
Confidence 33333344567789999998754 333 4799999999999976553 3344544443 33 455544
Q ss_pred c--eEEEEEcCC
Q psy16206 515 G--ISILYRKPA 524 (821)
Q Consensus 515 ~--~~l~~~~~~ 524 (821)
. ..+++++++
T Consensus 98 ~~~~~i~v~~ds 109 (321)
T 2x7q_A 98 PLLWAVSTGSNR 109 (321)
T ss_dssp CCEEEEEEESSC
T ss_pred CcceEEEECCCC
Confidence 4 367888775
No 160
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=94.87 E-value=0.0032 Score=65.04 Aligned_cols=116 Identities=20% Similarity=0.485 Sum_probs=76.7
Q ss_pred CccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccch
Q psy16206 682 ELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTRL 760 (821)
Q Consensus 682 ~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~ 760 (821)
+..|+..|+++.+++++|++++++...+..+|.+. ...|.+++..+.++..+.++. +.+ .+ .|-
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~--~~~w~~~~~~l~~g~~D~~~~~~~~---------t~----eR~ 131 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWK--NGHWTGLVGDLLSGTANMAVTSFSI---------NT----ARS 131 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEE--TTEECHHHHHHHHTSCSEECSSCBC---------CH----HHH
T ss_pred CceEEhHHHHHHHHHHcCCcEEEEECCCCcccccC--CCCHHHHHHHHHCCCcCEEEecccc---------CH----hHh
Confidence 56799999999999999999999988887777643 568999999999887775431 111 11 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhh---hcCceeEEEEecCccccccc
Q psy16206 761 VAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLA---KAGRIKYGCVEMGSTRNFFK 820 (821)
Q Consensus 761 ~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~---~~~~~~~~~~~~~~~~~~~~ 820 (821)
-...| + ...|... .. +-+++..++|++++||. .+.+.++|++.+++.+.+|+
T Consensus 132 ~~~~f---s---~P~~~~~-~~-i~~~~~~~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~ 186 (294)
T 2rc8_A 132 QVIDF---T---SPFFSTS-LG-ILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVR 186 (294)
T ss_dssp TTSEE---C---SCSEEEE-EE-EEEETTSCCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHH
T ss_pred ceEEE---c---cchHhcc-eE-EEEECCCCCcCChhhhhhcCcccCeEEEEEcCChHHHHHH
Confidence 00000 0 0001111 11 22244456899999998 24468999999999887764
No 161
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=94.87 E-value=0.28 Score=52.02 Aligned_cols=169 Identities=11% Similarity=0.003 Sum_probs=93.3
Q ss_pred ceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEe
Q psy16206 35 DIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVY 114 (821)
Q Consensus 35 ~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~ 114 (821)
|+.+.+...+ . .+...-.+....+..++|++||-.........+ ..+...++|+|....... ... +-.+.
T Consensus 101 g~~~~~~~~~-~-~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~-~~l~~~~iPvV~i~~~~~----~~~---~~~V~ 170 (366)
T 3h5t_A 101 DTQLTLIPAS-P-ASSVDHVSAQQLVNNAAVDGVVIYSVAKGDPHI-DAIRARGLPAVIADQPAR----EEG---MPFIA 170 (366)
T ss_dssp SCEEEEEECC-C-CTTCCHHHHHHHHHTCCCSCEEEESCCTTCHHH-HHHHHHTCCEEEESSCCS----CTT---CCEEE
T ss_pred hCCEEEEEcC-C-CccHHHHHHHHHHHhCCCCEEEEecCCCChHHH-HHHHHCCCCEEEECCccC----CCC---CCEEE
Confidence 4455555443 1 221123344555666677777632222222222 345567999998854322 111 23466
Q ss_pred cChhhHHHHHHHHHHhCCCCEEEEEEec-------------------C-C---chhHHHHHHHhcCCCCCcCCCCCCe-E
Q psy16206 115 PESHLISKGISVIINDMDWDTFTIIYET-------------------H-D---NLVYLQQVLENAHDDDKEIRPGRPS-V 170 (821)
Q Consensus 115 p~~~~~~~al~~~~~~~~w~~v~ii~~~-------------------~-~---~~~~~~~~~~~~~~~~~~~~~~g~~-v 170 (821)
.++..-+..+++.+...|.++++++... . . -...+.+.+++.+ ..-.. .
T Consensus 171 ~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g-------~~~~~~~ 243 (366)
T 3h5t_A 171 PNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAG-------IDPGTVP 243 (366)
T ss_dssp ECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHT-------CCGGGSC
T ss_pred eChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCC-------CCCCcce
Confidence 7777788888899999999999999831 1 1 2445566666665 11000 1
Q ss_pred EEEEcCCCCCChHHHHHHhhcC--CCcEEEEeCChhHHHHHHHHHHHccccCc
Q psy16206 171 TIRQLPPDTDDYRPLLKEIKNS--SESHILLDCSMDKTVTILKQAKEVHLMGD 221 (821)
Q Consensus 171 ~~~~~~~~~~d~~~~l~~lk~~--~~~~ivl~~~~~~~~~~l~~a~~~g~~~~ 221 (821)
..........+-...++++.+. .+++|+. ++...+..+++++++.|+.-+
T Consensus 244 ~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP 295 (366)
T 3h5t_A 244 IMECWINNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEYLKSVGKSAP 295 (366)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred EEEcCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCC
Confidence 1111111112223345555433 4666654 556778889999999998644
No 162
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=94.87 E-value=0.015 Score=59.96 Aligned_cols=200 Identities=10% Similarity=0.045 Sum_probs=111.0
Q ss_pred eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHH--HHHHcCCcc---eEEeccc-c-chhhhcceee----
Q psy16206 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLI--GELQEQRAD---LAICDLT-I-TSERRAAVDF---- 507 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~l~~g~~D---i~~~~~~-~-t~~R~~~~~f---- 507 (821)
-+.-.+.+.+.+++|.++.+...+ ...+.+ ..+.+++.| ++++... . ++.+.....|
T Consensus 24 ~~aR~la~~l~~~lg~~vvV~n~~------------Ga~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~yd~~~ 91 (301)
T 2qpq_A 24 MLARLIGNYLTESLGQTAVVENRP------------GASGNVGARLVADRAPDGYSLLMVNSSFAVNPGVFRNLPFDPKK 91 (301)
T ss_dssp HHHHHHHHHHHHGGGSCEEEEECC------------TGGGHHHHHHHHTSCSSSSEEEEEETHHHHHHHHCTTCSSCTTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEECC------------ChhHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHhccCCCCCchh
Confidence 555567788888899988877543 345556 568899998 6554321 1 3333333333
Q ss_pred --c--ccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeecC--CChHHHH
Q psy16206 508 --T--MPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKN--SNVSLYQ 581 (821)
Q Consensus 508 --S--~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 581 (821)
+ ..+.....+++++++++ ..++.++..- .. -.|- ++.|.... +......
T Consensus 92 d~~pv~~~~~~~~~lvv~~~s~-~~sl~dL~~~---------------------ak--~~p~-~~~~g~~g~Gs~~hl~~ 146 (301)
T 2qpq_A 92 DFAAVINVAYVPSVFVVPAGSK-YKTLGELMAA---------------------AK--QTNT-QVTYGSCGNGTPQHLAG 146 (301)
T ss_dssp TEEEEEEEEEEEEEEEEETTCS-CCSHHHHHHH---------------------TC--SSSC-CCEEEESSTTSHHHHHH
T ss_pred cchhhhehhcCCeEEEEeCCCC-CCCHHHHHHH---------------------HH--hCCC-ceEEecCCCCcHHHHHH
Confidence 2 12566778888887765 3343333210 00 0000 11121111 1111111
Q ss_pred HHHH-hhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeec-----------c--eec-------
Q psy16206 582 RMHS-AMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG-----------G--LLD------- 640 (821)
Q Consensus 582 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~-----------~--~~~------- 640 (821)
+++. ...-....+.++...+++..+.. |++|+++.+...+..+++.. +++.+. + .+.
T Consensus 147 ~~l~~~~G~~~~~Vpy~g~~~a~~al~~-G~vD~~~~~~~~~~~~i~~g-~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~ 224 (301)
T 2qpq_A 147 ELLNVSAKTHMVHVPYKGCGPALNDVLG-SQIGLAVVTASSAIPFIKAG-KLQALAVTSKERSALLPEVPTVAEQGVAGY 224 (301)
T ss_dssp HHHHHHHTCCCEEEECSSHHHHHHHHHT-TSSSCEEEEHHHHHHHHHTT-SEEEEEECSSSCCTTCTTSCBSGGGTCTTC
T ss_pred HHHHHHhCCCeEEeccCChHHHHHHHHC-CCccEEEEcHHHHHHHHhcC-CeEEEEEcCCccccccCCCCChHHhCCCce
Confidence 1221 11111223577888899999998 99999998877766665543 232221 0 000
Q ss_pred --CCCcccccCC---chhhcccccceeEEEEeecCCccccccCC
Q psy16206 641 --SKGYGIAMPT---SKFLAKFSFGFAKLRVLFQGEPYMMKNPE 679 (821)
Q Consensus 641 --~~~~~~a~~k---~~l~~~in~al~~l~~~~~g~~~~i~~k~ 679 (821)
...+++++|+ +++++.|+++|.++.+ ++++.+.++++
T Consensus 225 ~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~--~~~~~~~~~~~ 266 (301)
T 2qpq_A 225 ELNQWHGLLVPGATPMAVRQKLYDGIAKVMQ--RDDVQKKLADL 266 (301)
T ss_dssp CCEEEEEEEEETTCCHHHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred EEEeEEEEEecCCCCHHHHHHHHHHHHHHHc--CHHHHHHHHHC
Confidence 1135677888 6799999999998877 66666544443
No 163
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=94.75 E-value=0.021 Score=59.14 Aligned_cols=199 Identities=14% Similarity=0.126 Sum_probs=110.8
Q ss_pred eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHH--HHHHcCCcc---eEEec---cccchhhh-cceee--
Q psy16206 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLI--GELQEQRAD---LAICD---LTITSERR-AAVDF-- 507 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~l~~g~~D---i~~~~---~~~t~~R~-~~~~f-- 507 (821)
-+.--+.+.+++++|.++.+...+ ...+.+ ..+.+++.| ++++. +.+++.+. +.+.|
T Consensus 35 ~~aR~la~~l~~~lg~~vvV~N~p------------Ga~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~~~yd~ 102 (314)
T 2dvz_A 35 IIARLVTQRMSQELGQPMVVENKG------------GAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDP 102 (314)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECC------------CGGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHSTTTCSCCT
T ss_pred HHHHHHHHHHHHHhCCCEEEEECC------------CchHHHHHHHHHhCCCCCcEEEEecCcHHHHHHHHhCCCCCCCc
Confidence 344457778888899998877543 234555 568888888 66543 34455444 33333
Q ss_pred ----c--ccceeeceEEEEEcCCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHhhhhcCCCcceeEeec--CCChHH
Q psy16206 508 ----T--MPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAK--NSNVSL 579 (821)
Q Consensus 508 ----S--~p~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 579 (821)
. ..+.....+++++++++ ..++.++.. +.. -.|- ++.|... .+....
T Consensus 103 ~~df~pv~~~~~~~~~lvv~~ds~-~~tl~dL~~---------------------~ak--~~p~-~~~~g~~g~Gs~~hl 157 (314)
T 2dvz_A 103 IKDFQPVTNFANTANVVAVNPKFP-AKDFKGFLE---------------------ELK--KNPG-KYSYGSSGTCGVLHL 157 (314)
T ss_dssp TTSEEEEEEEEEECEEEEECTTSS-CSSHHHHHH---------------------HHH--TSTT-TCEEEESCTTSHHHH
T ss_pred hhccceeeEcccCCEEEEEeCCCC-CCCHHHHHH---------------------HHH--hCCC-cEEEeCCCCCcHHHH
Confidence 2 12566778888887765 333333221 000 0000 1122211 111111
Q ss_pred HHHHHH-hhhccCCcccccCchhHHHHHHhccCceEEEecccchhhhhhhcCCceeec-----------c--eec-----
Q psy16206 580 YQRMHS-AMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVG-----------G--LLD----- 640 (821)
Q Consensus 580 ~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~g~~da~i~~~~~~~~~~~~~~~~~~~~-----------~--~~~----- 640 (821)
..+++. ...-....+.++...+++.++.. |++|+++.+......+++.. +++.+. + .+.
T Consensus 158 ~~~~l~~~~Gi~~~~Vpy~G~~~a~~al~~-G~vD~~~~~~~~~~~~i~~g-~lr~Lav~~~~r~~~~pdvPt~~e~G~~ 235 (314)
T 2dvz_A 158 MGESFKMATGTDIVHVPYKGSGPAVADAVG-GQIELIFDNLPSSMPQIQAG-KLRAMAIAWPTRIDAIKDVPTFADAGFP 235 (314)
T ss_dssp HHHHHHHHHTCCCEEEECSSHHHHHHHHHH-TSSSEEEEEHHHHHHHHHTT-SSEEEEEESSSCCGGGTTSCBTTTTTCG
T ss_pred HHHHHHHHhCCCeEEcccCCHHHHHHHHHc-CCceEEEEcHHHHHHHHHcC-CEEEEEecCccccccCCCCCCHHhcCCC
Confidence 112221 11111223567788899999998 99999999877766666543 222221 0 011
Q ss_pred ----CCCcccccCC---chhhcccccceeEEEEeecCCccccccC
Q psy16206 641 ----SKGYGIAMPT---SKFLAKFSFGFAKLRVLFQGEPYMMKNP 678 (821)
Q Consensus 641 ----~~~~~~a~~k---~~l~~~in~al~~l~~~~~g~~~~i~~k 678 (821)
...+++++|+ +++++.+++++.++.+ ++++.+.+++
T Consensus 236 ~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~--~p~~~~~~~~ 278 (314)
T 2dvz_A 236 VLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALK--DPKVIKALDD 278 (314)
T ss_dssp GGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred ceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHc--CHHHHHHHHH
Confidence 1134677888 6799999999998877 6666654444
No 164
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=94.14 E-value=0.03 Score=56.25 Aligned_cols=117 Identities=29% Similarity=0.514 Sum_probs=75.1
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++++|++++++...+..++..++.+..|.+++..+.++..+.++. +.++ | .|
T Consensus 30 g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t---------~----~R 96 (263)
T 1mqi_A 30 ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTIT---------L----VR 96 (263)
T ss_dssp GGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECSSCBCC---------H----HH
T ss_pred CceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHHcCCcCEEEEeeEec---------H----HH
Confidence 45689999999999999999999998877777777766557999999999887775431 2211 1 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
--...| + ...|... ..++ +++ ..+|++++||..++.+++|++.++++..+|
T Consensus 97 ~~~~~f---s---~p~~~~~-~~~~-~~~-~~~i~~~~dL~g~~~~~ig~v~~~~~~~~~ 147 (263)
T 1mqi_A 97 EEVIDF---S---KPFMSLG-ISIM-IKK-GTPIESAEDLSKQTEIAYGTLDSGSTKEFF 147 (263)
T ss_dssp HTTEEE---C---SCSEEEC-EEEE-EET-TCSCCSHHHHHTCSSSEEECBSSSHHHHHH
T ss_pred Hhhccc---c---cceeccc-EEEE-EcC-ccccCCHHHHhcccCeeEEEEeccHHHHHH
Confidence 100000 0 0000010 1122 233 346999999998766678987777665543
No 165
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=93.85 E-value=2.6 Score=42.92 Aligned_cols=184 Identities=8% Similarity=0.051 Sum_probs=96.9
Q ss_pred cEEEEeCC--Cc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcc
Q psy16206 2 KIVGIFGP--NE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~--~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~ 75 (821)
+||++++. +. .....+++-+.++ . |+++ .+.++. .++....+....++.+++++||......
T Consensus 7 ~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~---~------g~~~--~~~~~~-~~~~~~~~~l~~l~~~~vdgIi~~~~~~ 74 (296)
T 2hqb_A 7 MVGLLVEDTIDDQGWNRKAYEGLLNIHSN---L------DVDV--VLEEGV-NSEQKAHRRIKELVDGGVNLIFGHGHAF 74 (296)
T ss_dssp EEEEECCCC----CCTHHHHHHHHHHHHH---S------CCEE--EEECCC-CSHHHHHHHHHHHHHTTCCEEEECSTHH
T ss_pred EEEEEECCCCCCCcHHHHHHHHHHHHHHH---h------CCeE--EEEeCC-CCHHHHHHHHHHHHHCCCCEEEEcCHhH
Confidence 68999872 21 3344555544433 2 2333 344322 3444445667778788999999754332
Q ss_pred hHHHHHHHhccC-CCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHH-HHHHh-CCCCEEEEEEecCC--chhHHH
Q psy16206 76 NRNIIESMCQMF-DIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGIS-VIIND-MDWDTFTIIYETHD--NLVYLQ 150 (821)
Q Consensus 76 ~~~~v~~i~~~~-~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~-~~~~~-~~w~~v~ii~~~~~--~~~~~~ 150 (821)
..++..++..+ ++|++....... . +.+-.....+ .++..++ .++.+ .+-+++++|..... ....+.
T Consensus 75 -~~~~~~~~~~~p~~p~v~id~~~~----~---~~~~~v~~d~-~~g~~lag~la~~l~~~~~Ig~i~g~~~~~r~~Gf~ 145 (296)
T 2hqb_A 75 -AEYFSTIHNQYPDVHFVSFNGEVK----G---ENITSLHFEG-YAMGYFGGMVAASMSETHKVGVIAAFPWQPEVEGFV 145 (296)
T ss_dssp -HHHHHTTTTSCTTSEEEEESCCCC----S---SSEEEEEECC-HHHHHHHHHHHHHTCSSSEEEEEESCTTCHHHHHHH
T ss_pred -HHHHHHHHHHCCCCEEEEEecCcC----C---CCEEEEEech-HHHHHHHHHHHHhhccCCeEEEEcCcCchhhHHHHH
Confidence 23345555543 788887643221 1 2232333443 3433333 33333 25699999986543 234444
Q ss_pred HHHHhcCCCCCcCCCCCCeEEEEEcCCCCCC---hHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHHcc
Q psy16206 151 QVLENAHDDDKEIRPGRPSVTIRQLPPDTDD---YRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVH 217 (821)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d---~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~a~~~g 217 (821)
+.+++.+ .. .+... +...-.+ -....+++.+.++++|+ +.....+.-+++++++.|
T Consensus 146 ~~~~~~~-------~~--~~~~~-~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 146 DGAKYMN-------ES--EAFVR-YVGEWTDADKALELFQELQKEQVDVFY-PAGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHTT-------CC--EEEEE-ECSSSSCHHHHHHHHHHHHTTTCCEEE-CCCTTTHHHHHHHHHHHT
T ss_pred HHHHHhC-------CC--eEEEE-eeccccCHHHHHHHHHHHHHCCCcEEE-ECCCCCCHHHHHHHHHcC
Confidence 5555554 21 22221 2221112 23445666666788766 444556677889999988
No 166
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=93.62 E-value=0.015 Score=59.81 Aligned_cols=57 Identities=33% Similarity=0.686 Sum_probs=49.8
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCC----cchhhHHHHhhccceee
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTG----KWNGLIGELQEQVDTFI 737 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~ 737 (821)
|+..|+..|+++.+++++|++++++...+..+|..++.++ .|.+++..+.++..+.+
T Consensus 61 g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~D~~ 121 (292)
T 1pb7_A 61 QCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMI 121 (292)
T ss_dssp EEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEE
T ss_pred cCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCCcCEE
Confidence 3568999999999999999999999999889998876654 89999999999877754
No 167
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=91.75 E-value=0.051 Score=54.85 Aligned_cols=104 Identities=9% Similarity=0.063 Sum_probs=67.6
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeeehhhhhhhhhhcccccccccch
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILFFIYSILFFIYTFVNEAVSTRL 760 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 760 (821)
|+..|+..|+++.+++++|++++++... .|..+...+.++..+.+..+.++- -....-.++..+
T Consensus 52 g~~~G~~~dl~~~i~~~lg~~~~~~~~~------------~~~~~~~~l~~G~~D~~~~~~~t~----~r~~~~~fs~p~ 115 (267)
T 3mpk_A 52 EQFGGISAAVLQLLQLRTGLDFEIIGVD------------TVEELIAKLRSGEADMAGALFVNS----ARESFLSFSRPY 115 (267)
T ss_dssp CCCBSHHHHHHHHHHHHHCCEEEEEEES------------SHHHHHHHHHHTSCSEEEEEECCG----GGTTTEEECSCS
T ss_pred CcEeeeHHHHHHHHHHHHCCeEEEEecC------------CHHHHHHHHHCCCccEEecccCCh----hhhcceEechhh
Confidence 5678999999999999999999988543 388888889888777543222110 000000111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCccccccc
Q psy16206 761 VAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820 (821)
Q Consensus 761 ~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~ 820 (821)
....+ .+-+.+..+.|++++||. +.++|+..+++...+++
T Consensus 116 ~~~~~-----------------~l~~~~~~~~i~~~~dL~---g~~i~v~~g~~~~~~l~ 155 (267)
T 3mpk_A 116 VRNGM-----------------VIVTRQDPDAPVDADHLD---GRTVALVRNSAAIPLLQ 155 (267)
T ss_dssp EEECE-----------------EEEEESSTTSCSSGGGCT---TCEEEEETTCTHHHHHH
T ss_pred ccCce-----------------EEEEECCCCCCCCHHHHC---CCEEEEeCCchhHHHHH
Confidence 11111 122355567899999998 47999999998877653
No 168
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=91.58 E-value=0.021 Score=56.77 Aligned_cols=103 Identities=21% Similarity=0.256 Sum_probs=65.2
Q ss_pred CCccceecchHHHHHhhc-CceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhccccccccc
Q psy16206 681 GELYGYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVST 758 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 758 (821)
|+..|+..|+++.+++++ |++++++.. .|..++..+.++..+.++. +.+ .| .
T Consensus 29 G~~~G~~vdl~~~ia~~l~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~---------t~----e 82 (243)
T 4gvo_A 29 GKLTGYDVELVKEIDKRLPGYKFKFKTM-------------DFSNLLVSLGAGKVDIVAHQMEK---------SK----E 82 (243)
T ss_dssp SCEESHHHHHHHHHHHTCTTEEEEEEEC-------------CGGGHHHHHHTTSCSEECSCCBC---------CH----H
T ss_pred CcEEEhHHHHHHHHHHhccCCeEEEEEC-------------CHHHHHHHHHCCCCCEecccCCC---------CH----H
Confidence 567899999999999997 999988753 3888888888887664331 111 11 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 759 RLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 759 r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
|--...| ...|-.+...++.+.+..++|++++||. +.++|+..+++...++
T Consensus 83 R~~~~~f-------s~p~~~~~~~~~~~~~~~~~~~~~~dL~---g~~v~v~~gs~~~~~~ 133 (243)
T 4gvo_A 83 REKKFLF-------NDVAYNNFPLQLTVLDSNNSINSTKDLA---GKRVITSATSNGALVL 133 (243)
T ss_dssp HHHHSEE-------CSSCCEECCEEEEEETTCCSCSSGGGGT---TCEEEECTTCHHHHHH
T ss_pred Hhhhhhh-------hhhhcccccceEEEeccccccCchHHhc---CCeEEEecCchHHHHH
Confidence 1110000 0001111122345566678999999997 4799999887655443
No 169
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=91.56 E-value=0.32 Score=49.24 Aligned_cols=58 Identities=5% Similarity=-0.107 Sum_probs=36.1
Q ss_pred CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeec--cccee-eceEEEEEcC
Q psy16206 453 NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFT--MPFMT-LGISILYRKP 523 (821)
Q Consensus 453 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS--~p~~~-~~~~l~~~~~ 523 (821)
|++++++. ++|+.+..+|.+|++|+++.+......+.+.+.+. .++.. ....++++++
T Consensus 37 Gl~ve~~~-------------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~ 97 (280)
T 1zbm_A 37 WLEIEHVI-------------EDIETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAGASVGDGYGPVVVAKS 97 (280)
T ss_dssp SCEEEEEE-------------CCHHHHHHHGGGTCCSEEEEEHHHHTTSTTTEEECSSCCEEESSCCCEEEESS
T ss_pred CceEEEEe-------------CCHHHHHHHHHcCCCCEEEECHHHHHHhcCCCcEEeeccccCCCeeEEEEEcC
Confidence 77888752 26899999999999999875433333333444443 33333 3344566654
No 170
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=90.06 E-value=0.51 Score=51.00 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=44.3
Q ss_pred HHHHcCC-eEEEEEecCCcccccCCCCCcchHHHHHHHcCC----cceEEec--cc--cchh---hhcceeeccc--cee
Q psy16206 448 IANELNF-TYKFVLERENTYGTLNPQTGKWNGLIGELQEQR----ADLAICD--LT--ITSE---RRAAVDFTMP--FMT 513 (821)
Q Consensus 448 ia~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~----~Di~~~~--~~--~t~~---R~~~~~fS~p--~~~ 513 (821)
+.++.|+ +++++..+ +|..++.+|..|+ +|++... +. .+.. |.+..++..+ +..
T Consensus 56 ~~~~~Gl~~Ve~~~~~------------~~~~~~~al~~G~~~~giD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (417)
T 2g29_A 56 FYAKYGMPDVEVLKQA------------SWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILARLNV 123 (417)
T ss_dssp HHHHTTCTTCEEEECS------------CHHHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEEEECCB
T ss_pred chHHcCCCeeEEEecC------------CHHHHHHHHHCCCCcCCcCeEeecchHHHHHHhCcccCCCCCCEEEEEEecc
Confidence 4566799 99998654 7999999999999 9998652 22 2222 3344555443 245
Q ss_pred eceEEEEEcCC
Q psy16206 514 LGISILYRKPA 524 (821)
Q Consensus 514 ~~~~l~~~~~~ 524 (821)
.+.+++++++.
T Consensus 124 ~g~~i~v~~~~ 134 (417)
T 2g29_A 124 NGQGIQLGNNY 134 (417)
T ss_dssp SCEEEEECGGG
T ss_pred CCeEEEEecch
Confidence 56788888764
No 171
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=89.36 E-value=0.09 Score=53.61 Aligned_cols=54 Identities=28% Similarity=0.554 Sum_probs=45.3
Q ss_pred CccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceee
Q psy16206 682 ELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFI 737 (821)
Q Consensus 682 ~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 737 (821)
+..|+..|+++.+++++|++++++...+..+|.. ..+.|.+++..+.++..+.+
T Consensus 56 ~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~--~~~~~~~~~~~l~~g~~D~~ 109 (284)
T 2a5s_A 56 CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKK--VNNVWNGMIGEVVYQRAVMA 109 (284)
T ss_dssp EEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCE--ETTEECHHHHHHHTTSCSEE
T ss_pred eeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcc--cCCCHHHHHHHHhcCCcCEE
Confidence 4579999999999999999999998877766654 34679999999999877754
No 172
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=89.20 E-value=3.3 Score=40.62 Aligned_cols=123 Identities=14% Similarity=0.042 Sum_probs=78.0
Q ss_pred HHHHHHHhhcCeEEEEcCCCcchH--------HHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHH
Q psy16206 54 AKLMCNATSEGIAAIFGPQSIENR--------NIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGIS 125 (821)
Q Consensus 54 ~~~a~~li~~~V~aiiGp~~s~~~--------~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~ 125 (821)
.+++.+|...|+++|+=+..++.. .....+.+..++|+++. +.+++
T Consensus 56 ~~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~--------------------------~~A~~ 109 (240)
T 3ixl_A 56 VDHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM--------------------------STAVL 109 (240)
T ss_dssp HHHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH--------------------------HHHHH
T ss_pred HHHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH--------------------------HHHHH
Confidence 455666766699999977666443 34455556667887753 36777
Q ss_pred HHHHhCCCCEEEEEEecCCc-hhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcC--C-------CCCChHHHHHH-h-hcC
Q psy16206 126 VIINDMDWDTFTIIYETHDN-LVYLQQVLENAHDDDKEIRPGRPSVTIR-QLP--P-------DTDDYRPLLKE-I-KNS 192 (821)
Q Consensus 126 ~~~~~~~w~~v~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~--~-------~~~d~~~~l~~-l-k~~ 192 (821)
+.++..|-+||+++...... ...+++.+++.+ +.+... ... . +...+.+.+++ + ...
T Consensus 110 ~al~~~g~~rvglltpy~~~~~~~~~~~l~~~G----------iev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (240)
T 3ixl_A 110 NGLRALGVRRVALATAYIDDVNERLAAFLAEES----------LVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAP 179 (240)
T ss_dssp HHHHHTTCSEEEEEESSCHHHHHHHHHHHHHTT----------CEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTST
T ss_pred HHHHHhCCCEEEEEeCChHHHHHHHHHHHHHCC----------CEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCC
Confidence 77888899999999874433 345556666665 444332 221 1 12235566677 6 667
Q ss_pred CCcEEEEeCChhHHHHHHHH
Q psy16206 193 SESHILLDCSMDKTVTILKQ 212 (821)
Q Consensus 193 ~~~~ivl~~~~~~~~~~l~~ 212 (821)
+++.||+.|..-....++.+
T Consensus 180 ~adaivL~CT~l~~l~~i~~ 199 (240)
T 3ixl_A 180 DSDGILLSSGGLLTLDAIPE 199 (240)
T ss_dssp TCSEEEEECTTSCCTTHHHH
T ss_pred CCCEEEEeCCCCchhhhHHH
Confidence 89999999886444434443
No 173
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=89.01 E-value=2.9 Score=42.77 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=45.7
Q ss_pred HHHHHHHHHH-cCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccch-h------------hhcceee
Q psy16206 442 VDLIKMIANE-LNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITS-E------------RRAAVDF 507 (821)
Q Consensus 442 ~dll~~ia~~-l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~-~------------R~~~~~f 507 (821)
..+.+.+.++ .|.+++++.. +.....+.+|.+|++|+++....... . +.+.+.+
T Consensus 37 ~~la~~~~~~~~g~~v~v~~~------------~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (314)
T 1us5_A 37 TGIAKLVNDANVGIRANARST------------GGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRA 104 (314)
T ss_dssp HHHHHHHHHHTSSEEEEEECC------------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEE
T ss_pred HHHHHHHHhcCCCceEEEEec------------CcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhe
Confidence 3455556654 6877777632 24678899999999999876432211 1 1123444
Q ss_pred cccceeeceEEEEEcCCC
Q psy16206 508 TMPFMTLGISILYRKPAK 525 (821)
Q Consensus 508 S~p~~~~~~~l~~~~~~~ 525 (821)
..+++....+++++++.+
T Consensus 105 v~~~~~~~~~lvv~~~~~ 122 (314)
T 1us5_A 105 LAALYPEVVHVVARKDAG 122 (314)
T ss_dssp EEEEEEEEEEEEEETTSS
T ss_pred hhhcCcceEEEEEECCCC
Confidence 446777888888987755
No 174
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=88.81 E-value=0.09 Score=52.64 Aligned_cols=56 Identities=30% Similarity=0.679 Sum_probs=46.3
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceee
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFI 737 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 737 (821)
|+..|+..|+++.+++++|++++++...+..+|... ....|.+++..+.++..+.+
T Consensus 27 g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~-~~~~~~~~~~~l~~g~~D~~ 82 (265)
T 2v3u_A 27 KKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQ-EDGTWNGLVGELVFKRADIG 82 (265)
T ss_dssp CEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBC-TTSCBCHHHHHHHTTSCSEE
T ss_pred ceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccC-CCCCcchHHHHHHcCCcCeE
Confidence 456899999999999999999999987776666543 35679999999998877754
No 175
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=88.22 E-value=14 Score=34.68 Aligned_cols=125 Identities=11% Similarity=0.154 Sum_probs=83.8
Q ss_pred CChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHH
Q psy16206 48 YDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVI 127 (821)
Q Consensus 48 ~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~ 127 (821)
++-..++..++++ .+|+++||.-..+ +. -+-+..++|+|... .+.....+++...
T Consensus 36 ~~l~~~v~~a~~~-~~~~dVIISRGgt--a~---~lr~~~~iPVV~I~-------------------~s~~Dil~al~~a 90 (196)
T 2q5c_A 36 ASLTRASKIAFGL-QDEVDAIISRGAT--SD---YIKKSVSIPSISIK-------------------VTRFDTMRAVYNA 90 (196)
T ss_dssp CCHHHHHHHHHHH-TTTCSEEEEEHHH--HH---HHHTTCSSCEEEEC-------------------CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-cCCCeEEEECChH--HH---HHHHhCCCCEEEEc-------------------CCHhHHHHHHHHH
Confidence 5677789999999 7799999954332 22 23455679988763 1223355666665
Q ss_pred HHhCCCCEEEEEEecCC--chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhH
Q psy16206 128 INDMDWDTFTIIYETHD--NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDK 205 (821)
Q Consensus 128 ~~~~~w~~v~ii~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~ 205 (821)
-+ ++ ++++++.-... +...+.+++ + ..+....+.. .++..+.++++++.+.++||-..
T Consensus 91 ~~-~~-~kIavvg~~~~~~~~~~~~~ll---~----------~~i~~~~~~~-~~e~~~~i~~l~~~G~~vvVG~~---- 150 (196)
T 2q5c_A 91 KR-FG-NELALIAYKHSIVDKHEIEAML---G----------VKIKEFLFSS-EDEITTLISKVKTENIKIVVSGK---- 150 (196)
T ss_dssp GG-GC-SEEEEEEESSCSSCHHHHHHHH---T----------CEEEEEEECS-GGGHHHHHHHHHHTTCCEEEECH----
T ss_pred Hh-hC-CcEEEEeCcchhhHHHHHHHHh---C----------CceEEEEeCC-HHHHHHHHHHHHHCCCeEEECCH----
Confidence 44 44 59998887664 444444443 2 4466555544 67899999999999999988543
Q ss_pred HHHHHHHHHHcccc
Q psy16206 206 TVTILKQAKEVHLM 219 (821)
Q Consensus 206 ~~~~l~~a~~~g~~ 219 (821)
...+.|.+.|+.
T Consensus 151 --~~~~~A~~~Gl~ 162 (196)
T 2q5c_A 151 --TVTDEAIKQGLY 162 (196)
T ss_dssp --HHHHHHHHTTCE
T ss_pred --HHHHHHHHcCCc
Confidence 346677888875
No 176
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=87.35 E-value=0.13 Score=51.28 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=64.0
Q ss_pred CCccceecchHHHHHhhcCce-EEEEEccCCcccccCCCCCcchhhHHHHhhccceeee-ehhhhhhhhhhccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFT-YKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFIL-FFIYSILFFIYTFVNEAVST 758 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 758 (821)
|+..|+..|+++.+.+++|++ ++++.. .|..+...+.++..+.++ .+.++-- ......++.
T Consensus 32 g~~~G~~~dl~~~i~~~~g~~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~t~~----r~~~~~~s~ 94 (257)
T 2q88_A 32 GKVSGAAPDVAREIFKRLGVADVVASIS-------------EYGAMIPGLQAGRHDAITAGLFMKPE----RCAAVAYSQ 94 (257)
T ss_dssp CCEESHHHHHHHHHHHHTTCCEEEEEEC-------------CGGGHHHHHHTTSCSEECSCCBCCHH----HHTTSEECS
T ss_pred CCcccccHHHHHHHHHHcCCCeeeEEeC-------------CHHHHHHHHHCCCcCEEEecccCCHH----HHhcccccc
Confidence 567899999999999999998 887642 377888888877766432 1111100 000000111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 759 RLVAGMWWFFTLIMISSYTANLAAFLTNTRMN-PPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 759 r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~-~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
.+.... ..+++ .+.. ..|++++||.++++.++|+..+++...++
T Consensus 95 p~~~~~----------------~~~~~-~~~~~~~i~~~~dL~~~~g~~i~~~~g~~~~~~l 139 (257)
T 2q88_A 95 PILCDA----------------EAFAL-KKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLA 139 (257)
T ss_dssp CCCEEC----------------EEEEE-ETTCTTCCCBHHHHHHCTTCCEEECTTSHHHHHH
T ss_pred chhcCc----------------eEEEE-ECCCccCCCCHHHHhccCCceEEEECCcccHHHH
Confidence 111111 11222 3333 36999999996556899999998876654
No 177
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=87.17 E-value=0.23 Score=48.61 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=61.0
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++++|++++++.. .|..+...+.++..+.++. +.++- -......++..
T Consensus 24 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~~~----~r~~~~~fs~p 86 (237)
T 3kzg_A 24 SSLYGFDIDLMQEICRRLHATCTFEAY-------------IFDDLFPALKNREVDLVIASMIITD----ERKKHFIFSLP 86 (237)
T ss_dssp SCCBSHHHHHHHHHHHHTTCEEEEEEE-------------CGGGHHHHHHTTSSSEECSSCBCCT----TGGGTCEECCC
T ss_pred CCEeeehHHHHHHHHHHhCCceEEEEc-------------CHHHHHHHHhCCCCCEEEEccccCh----hHhccceeeee
Confidence 567899999999999999999998763 2788888888877664321 11100 00000001111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNF 818 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~ 818 (821)
+....+ .++ +++ ..+|++++||.. .++|+..+++...+
T Consensus 87 ~~~~~~----------------~~~-~~~-~~~~~~~~dL~g---~~i~~~~g~~~~~~ 124 (237)
T 3kzg_A 87 YMESNS----------------QYI-TTV-DSKISTFDDLHG---KKIGVRKGTPYARQ 124 (237)
T ss_dssp SBCCEE----------------EEE-EET-TCSCCSGGGGTT---CEEEEETTSTHHHH
T ss_pred eeecce----------------EEE-EEC-CCCCCCHHHhCC---CEEEEecCCHHHHH
Confidence 111111 122 244 344999999984 79999999885544
No 178
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=86.48 E-value=6.4 Score=41.13 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=63.7
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
|||.+..... .....|+..+++..|.+ .++...+.. +-.|+..+.+.+..|+++|+++|+......
T Consensus 151 kIGfVgg~~~p~v~~~~~GF~~G~k~~np~-------i~v~~~~~g-~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~--- 219 (356)
T 3s99_A 151 IAGYIGSVPVPEVVQGINSFMLGAQSVNPD-------FRVKVIWVN-SWFDPGKEADAAKALIDQGVDIITQHTDST--- 219 (356)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHTTCTT-------CEEEEEECS-SSCCHHHHHHHHHHHHHTTCSEEEESSSSS---
T ss_pred EEEEECCCccHHHHHHHHHHHHHHHHHCCC-------CEEEEEECC-CCCChHHHHHHHHHHHhCCCcEEEECCCch---
Confidence 5888877555 33467899998877633 345544433 346899999999999999999999776654
Q ss_pred HHHHHhccCCCceeeeccCCC
Q psy16206 79 IIESMCQMFDIPHVEAFWDPN 99 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~ 99 (821)
.+...+.+.++..|.+..+..
T Consensus 220 Gv~~aa~e~Gv~vIG~D~dq~ 240 (356)
T 3s99_A 220 AAIQVAHDRGIKAFGQASDMI 240 (356)
T ss_dssp HHHHHHHHTTCEEEEEESCCG
T ss_pred HHHHHHHHcCCEEEEEcCchh
Confidence 456677788999998866544
No 179
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=85.91 E-value=2.5 Score=41.00 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCCc-hhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC---------CCChHHHHHHh
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHDN-LVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD---------TDDYRPLLKEI 189 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~---------~~d~~~~l~~l 189 (821)
..++++.++..|-+||+++...... ....++.+++.+ ..+... ..... ...+.+.++++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt~~~~~~~~~~~~~l~~~G----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGTPYIKERTLEEVEWWRNKG----------FEIVGYDGLGKIRGIDISNTPIFTIYRLVKRH 165 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHHHTTT----------CEEEEEEECCCCSHHHHHTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCeEEEEeCCchHHHHHHHHHHHhCC----------cEEecccCCCCCCcchhhccCHHHHHHHHHHH
Confidence 4666666777888999999754433 335555666554 444322 22110 12255566666
Q ss_pred hcC--CCcEEEEeCChhHH
Q psy16206 190 KNS--SESHILLDCSMDKT 206 (821)
Q Consensus 190 k~~--~~~~ivl~~~~~~~ 206 (821)
.+. +++.||+.|..-..
T Consensus 166 ~~~~~gadaIvLgCT~l~~ 184 (223)
T 2dgd_A 166 LNEVLKADAVYIACTALST 184 (223)
T ss_dssp HHHHTTSSEEEECCTTSCC
T ss_pred hcccCCCCEEEEeCCcccH
Confidence 666 89999998876443
No 180
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=85.52 E-value=0.16 Score=50.36 Aligned_cols=102 Identities=22% Similarity=0.175 Sum_probs=63.6
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++.. .|..+...+.++..+.++. +.++-- ......++..
T Consensus 43 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~~~~----r~~~~~~s~p 105 (249)
T 4f3p_A 43 DKYVGFDLDLWAEIAKGAGWTYKIQPM-------------DFAGLIPALQTQNIDVALSGMTIKEE----RRKAIDFSDP 105 (249)
T ss_dssp TEEESHHHHHHHHHHHHHTCCEEEEEE-------------CGGGHHHHHHTTSCSEEEEEEECCHH----HHTTEEECSC
T ss_pred CeEEEEhHHHHHHHHHHcCCceEEEec-------------CHHHHHHHHHCCCCCEEEeccccCHH----HHcCcceecc
Confidence 456799999999999999999998763 2778888888877664321 111100 0000001111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+....+. +-+.+..+.|++++||. +.++|+..+++...++
T Consensus 106 ~~~~~~~-----------------~~~~~~~~~i~~~~dL~---g~~i~v~~g~~~~~~l 145 (249)
T 4f3p_A 106 YYDSGLA-----------------AMVQANNTTIKSIDDLN---GKVIAAKTGTATIDWI 145 (249)
T ss_dssp CEEEEEE-----------------EEEETTCCSCCSSGGGT---TSEEEEETTSHHHHHH
T ss_pred eeeccEE-----------------EEEECCCCCcCChHHhC---CCEEEEeCCChHHHHH
Confidence 1111111 22244455799999997 4799999999877665
No 181
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=85.46 E-value=0.072 Score=52.73 Aligned_cols=105 Identities=20% Similarity=0.251 Sum_probs=66.7
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++++|++++++.. .|..+...+.++..+.+++ +.++-- +...-.++..
T Consensus 25 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~t~~----r~~~~~~s~p 87 (245)
T 3k4u_A 25 GNVIGFDVDLAREMAKAMGVKLKLVPT-------------SWDGLIPGLVTEKFDIIISGMTISQE----RNLRVNFVEP 87 (245)
T ss_dssp TEEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHHHHTTSCSEECSSCBCCHH----HHTTSEECSC
T ss_pred CCCccchHHHHHHHHHHhCCeEEEEEc-------------cHHHHHHHHhCCCcCEEEecCcCCHH----HHhhcCcchh
Confidence 557899999999999999999998763 2888888888887775321 111100 0000011111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+.... ..+++.+....+|++++||.+ .+.++|+..+++...++
T Consensus 88 ~~~~~----------------~~~~~~~~~~~~i~~~~dL~~-~g~~i~v~~g~~~~~~l 130 (245)
T 3k4u_A 88 YIVVG----------------QSLLVKKGLEKGVKSYKDLDK-PELTLVTKFGVSAEYAA 130 (245)
T ss_dssp SEEEC----------------EEEEEETTTTTTCCSGGGGCC-SSCEEEEETTSHHHHHH
T ss_pred hheec----------------eEEEEECCcccccCCHHHhcc-CCcEEEEeCCcHHHHHH
Confidence 11111 123333444488999999984 46899999999877655
No 182
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=85.35 E-value=3.9 Score=38.74 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=49.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++. .++...++.+|.+|++|+++..... ....+. +.++.....+
T Consensus 21 ~~l~~~l~~f~~~~P~i~i~i~-------------~~~~~~~~~~l~~g~~Di~i~~~~~---~~~~~~-~~~l~~~~~~ 83 (222)
T 4ab5_A 21 DWLMPAMGEFRPMWPQVELDIV-------------SGFQADPVGLLLQHRADLAIVSEAE---KQNGIS-FQPLFAYEMV 83 (222)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEE-------------CCCCSCTHHHHHTTSCSEEEESCCC---CCTTEE-EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEe-------------cCCHHHHHHHHHcCCcCEEEecCCC---CcCCeE-EEEeecCcEE
Confidence 44567888887776 6777776 3356779999999999999864322 222232 4588889999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 84 ~v~~~~~p 91 (222)
T 4ab5_A 84 GICAPDHP 91 (222)
T ss_dssp EEECTTSG
T ss_pred EEecCCCh
Confidence 99987754
No 183
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=85.02 E-value=4.6 Score=40.70 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=26.1
Q ss_pred CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEecc
Q psy16206 453 NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDL 495 (821)
Q Consensus 453 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 495 (821)
|++++++.++ +.+.+..++..|++|++..+.
T Consensus 32 g~~v~~~~~~------------~~~~~~~al~~G~~D~~~~~~ 62 (283)
T 3hn0_A 32 NKKVQVKVVD------------SPDLAQALLIKQETDIAVLPM 62 (283)
T ss_dssp TEEEEEEEES------------CHHHHHHHHHTTCCSEEEEEH
T ss_pred CccEEEEEeC------------CHHHHHHHHHCCCCCEEEEcH
Confidence 7888998775 678899999999999997543
No 184
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=84.52 E-value=0.24 Score=47.91 Aligned_cols=102 Identities=11% Similarity=0.170 Sum_probs=63.0
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++.. .|..+...+.++..+.+++ +.++- .......++..
T Consensus 22 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~~~----~r~~~~~~s~p 84 (227)
T 3tql_A 22 GQVEGFGADIVKAVCKQMQAVCTISNQ-------------PWDSLIPSLKLGKFDALFGGMNITT----ARQKEVDFTDP 84 (227)
T ss_dssp CCEESHHHHHHHHHHHHTTCEEEEEEC-------------CHHHHHHHHHHTSCSEECSSCBCCT----TGGGTEEECSC
T ss_pred CCcccchHHHHHHHHHHhCCeEEEEeC-------------CHHHHHHHHhCCCCCEEEecCcCCH----hHHhheecccc
Confidence 567899999999999999999998752 3888888888877664321 11100 00000001111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+.... ..+-+++..+.+++++||. +.++|+..+++...++
T Consensus 85 ~~~~~-----------------~~l~~~~~~~~~~~~~dL~---g~~v~~~~g~~~~~~l 124 (227)
T 3tql_A 85 YYTNS-----------------VSFIADKNTPLTLSKQGLK---GKIIGVQGGTTFDSYL 124 (227)
T ss_dssp SBCCE-----------------EEEEEETTSCCCCSTTTTT---TCEEEEETTSHHHHHH
T ss_pred eeccc-----------------eEEEEeCCCCCCCCHHHhC---CCEEEEEecccHHHHH
Confidence 11111 1122355445558999997 5799999999877665
No 185
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=84.23 E-value=0.2 Score=48.70 Aligned_cols=103 Identities=20% Similarity=0.282 Sum_probs=64.3
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeeehhhhhhhhhhcccccccccch
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILFFIYSILFFIYTFVNEAVSTRL 760 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 760 (821)
|+..|+..|+++.+.+++|++++++.. .|..+...+.++..+.+..+.++-- ....-.++..+
T Consensus 31 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~~~----r~~~~~~s~p~ 93 (234)
T 3h7m_A 31 GKPAGYNVELTRAIAEVMGMTVEFRLG-------------AWSEMFSALKSGRVDVLQGISWSEK----RARQIDFTPPH 93 (234)
T ss_dssp SCEESHHHHHHHHHHHHHTCCEEEEEE-------------CGGGHHHHHHTTSSSEEEEEECCHH----HHTTEEEEEEE
T ss_pred CCEeeeEHHHHHHHHHHcCCceEEEeC-------------CHHHHHHHHhCCCeeEEEeccCCHh----HHhhcCCCccc
Confidence 567899999999999999999998742 2778888888887775432222100 00000011111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCccccccc
Q psy16206 761 VAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820 (821)
Q Consensus 761 ~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~ 820 (821)
....+ .+-+++..+.|++++||. +.++|+..+++...+++
T Consensus 94 ~~~~~-----------------~~~~~~~~~~~~~~~dL~---g~~i~~~~g~~~~~~l~ 133 (234)
T 3h7m_A 94 TIVYH-----------------AIFARRDSPPAAGLEDLR---GRKVALHRDGIMHEYLA 133 (234)
T ss_dssp EEEEE-----------------EEEEESSSCCCSSGGGGT---TSCEEEETTSHHHHHHH
T ss_pred cccce-----------------EEEEECCCCCCCCHHHhC---CCEEEEEeCchHHHHHH
Confidence 11111 122345445699999997 47999999988776653
No 186
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=84.01 E-value=6.8 Score=36.78 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=50.2
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++... +...+.++|.+|++|+++...... ...+. +.|+.....+
T Consensus 17 ~~l~~~l~~~~~~~P~i~i~i~~~-------------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~~~-~~~l~~~~~~ 79 (219)
T 3jv9_A 17 YLLPKLIVSLRRTAPKMPLMLEEN-------------YTHTLTESLKRGDVDAIIVAEPFQ---EPGIV-TEPLYDEPFF 79 (219)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEEE-------------CHHHHHHHHHHTSSSEEEEESSCC---CTTEE-EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeC-------------CcHHHHHHHHcCCCCEEEEcCCCC---CCCee-EEEeeeceEE
Confidence 44567788887765 788888743 467899999999999998644222 22232 4678889999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 80 ~v~~~~~p 87 (219)
T 3jv9_A 80 VIVPKGHS 87 (219)
T ss_dssp EEEETTCG
T ss_pred EEEeCCCC
Confidence 99988744
No 187
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=83.48 E-value=0.088 Score=52.71 Aligned_cols=103 Identities=12% Similarity=0.168 Sum_probs=65.0
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++.. .|..+...+.++..+.++. +.++-- +.....++..
T Consensus 49 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~t~~----r~~~~~fs~p 111 (259)
T 4dz1_A 49 GKLQGIDLELFSSYCQSRHCKLNITEY-------------AWDGMLGAVASGQADVAFSGISITDK----RKKVIDFSEP 111 (259)
T ss_dssp CCEESHHHHHHHHHHHHHTCEEEEEEC-------------CHHHHHHHHHHTSSSEEEEEEECCHH----HHTTEEECCC
T ss_pred CCEEEeHHHHHHHHHHHhCCeEEEEEc-------------CHHHHHHHHhCCCCCEEEECCcCCHH----Hhhccccccc
Confidence 567899999999999999999998753 3888888888887775321 111100 0000001111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+.... ..+++......+|++++||.. .++|+.++++...++
T Consensus 112 ~~~~~----------------~~~~~~~~~~~~i~~~~dL~g---~~v~v~~g~~~~~~l 152 (259)
T 4dz1_A 112 YYINS----------------FYLVSMANHKITLNNLNELNK---YSIGYPRGMAYSDLI 152 (259)
T ss_dssp SEEEE----------------EEEEEETTSCCCCCSGGGGGG---SCEEEETTSTHHHHH
T ss_pred hhhCc----------------eEEEEEcCCCCCCCCHHHhCC---CEEEEeCCcHHHHHH
Confidence 11111 112333444569999999984 799999998877665
No 188
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=83.14 E-value=2.4 Score=40.63 Aligned_cols=70 Identities=9% Similarity=-0.015 Sum_probs=50.0
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++.. ++...+..+|.+|++|+++...... ...+. +.++.....+
T Consensus 24 ~~l~~~l~~~~~~~P~v~i~~~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~ 86 (232)
T 3ho7_A 24 YLLPRVFPIWKKELAGLEIHVSE-------------MQTSRCLASLLSGEIDMAIIASKAE---TEGLE-DDLLYYEEFL 86 (232)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEE-------------CCHHHHHHHHHHTSCSEEEESSCCC---CTTEE-EEEEEEEEEE
T ss_pred hhhHHHHHHHHHHCCCcEEEEEe-------------CCHHHHHHHHHcCCCCEEEEcCCCC---CCCeE-EEEecccCEE
Confidence 44567788887765 67777763 3567899999999999998644322 22232 4688889999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 87 ~v~~~~hp 94 (232)
T 3ho7_A 87 GYVSRCEP 94 (232)
T ss_dssp EEECTTSG
T ss_pred EEEcCCCc
Confidence 99987753
No 189
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=82.92 E-value=0.18 Score=49.69 Aligned_cols=102 Identities=17% Similarity=0.331 Sum_probs=63.8
Q ss_pred CCccceecchHHHHHhhcC-ceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELN-FTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVST 758 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 758 (821)
|+..|+..|+++.+.+++| ++++++.. .|..+...+.++..+.++. +.++-- ......++.
T Consensus 27 g~~~G~~~dl~~~i~~~~g~~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~~~~----r~~~~~~s~ 89 (246)
T 4eq9_A 27 GELTGYEIEVVRAIFKDSDKYDVKFEKT-------------EWSGVFAGLDADRYNMAVNNLSYTKE----RAEKYLYAA 89 (246)
T ss_dssp TEEESHHHHHHHHHHTTCSSEEEEEEEC-------------CHHHHHHHHHTTSCSEECSSCCCCHH----HHHHEEECC
T ss_pred CCCcccHHHHHHHHHHHcCCceEEEEeC-------------CHHHHHHHHhCCCcCEEecccccChh----hhhceeecc
Confidence 4567999999999999999 99988763 3888888888887664331 111100 000000111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 759 RLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 759 r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
.+....+ .+-+++..++|++++||. +.++|+..+++...++
T Consensus 90 p~~~~~~-----------------~~~~~~~~~~i~~~~dL~---g~~i~~~~g~~~~~~l 130 (246)
T 4eq9_A 90 PIAQNPN-----------------VLVVKKDDSSIKSLDDIG---GKSTEVVQATTSAKQL 130 (246)
T ss_dssp CCEECCE-----------------EEEEETTCCSCSSGGGCT---TCEEEECTTCHHHHHH
T ss_pred ceecCce-----------------EEEEECCCCCCCCHHHhC---CCEEEEecCccHHHHH
Confidence 1111111 122344467899999998 4799999998876654
No 190
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=82.90 E-value=0.22 Score=48.10 Aligned_cols=102 Identities=20% Similarity=0.193 Sum_probs=63.0
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++.. .|..+...+.++..+.++. +.++-- ......++..
T Consensus 22 g~~~G~~~dl~~~~~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~~~~----r~~~~~~~~p 84 (226)
T 1wdn_A 22 DLYVGFDVDLWAAIAKELKLDYELKPM-------------DFSGIIPALQTKNVDLALAGITITDE----RKKAIDFSDG 84 (226)
T ss_dssp TEEESHHHHHHHHHHHHHTCCEEEEEE-------------CGGGHHHHHHTTSSSEEEEEEECCHH----HHTTSEECSC
T ss_pred CcEEEeeHHHHHHHHHHhCCEEEEEEC-------------CHHHHHHHHhCCCCCEEEEcCcCCHH----HhCccccccc
Confidence 567899999999999999999988752 2778888888877664331 111000 0000000111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+.... ..+.+++..+.|++++||. +.++|+..+++...++
T Consensus 85 ~~~~~-----------------~~~~~~~~~~~i~~~~dL~---g~~i~~~~g~~~~~~l 124 (226)
T 1wdn_A 85 YYKSG-----------------LLVMVKANNNDVKSVKDLD---GKVVAVKSGTGSVDYA 124 (226)
T ss_dssp CEEEE-----------------EEEEEETTCCSCSSSTTTT---TCEEEEETTSHHHHHH
T ss_pred hhcCc-----------------eEEEEeCCCCCCCCHHHhC---CCEEEEEcCCcHHHHH
Confidence 11011 1122344445799999997 4789999998877665
No 191
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=82.73 E-value=0.21 Score=48.53 Aligned_cols=106 Identities=11% Similarity=0.115 Sum_probs=63.7
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++++|++++++... .|..+...+.++..++++. +.++----- .....++..
T Consensus 25 g~~~G~~~dl~~~i~~~~g~~~~~~~~~------------~~~~~~~~l~~g~~D~~~~~~~~~~~r~~--~~~~~~s~p 90 (233)
T 1ii5_A 25 AAFTGISLDVWRAVAESQKWNSEYVRQN------------SISAGITAVAEGELDILIGPISVTPERAA--IEGITFTQP 90 (233)
T ss_dssp -CEESHHHHHHHHHHHHHTCCEEEEECS------------CHHHHHHHHHTTSCSEEEEEEECCHHHHT--STTEEECCC
T ss_pred CCEEEEeHHHHHHHHHHcCCcEEEEEeC------------CHHHHHHHHHCCCcCEEEeeeecCccccc--cceeEEccc
Confidence 4568999999999999999999987642 4888888888887665331 111000000 000000111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCC-CCCChhhhhhcCceeEEEEecCccccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNP-PIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~-~i~s~~dL~~~~~~~~~~~~~~~~~~~~~ 820 (821)
+.. .-..+++ ++..+ +|++++||. +.++|+..+++...+++
T Consensus 91 ~~~----------------~~~~~~~-~~~~~~~i~~~~dL~---g~~v~~~~g~~~~~~l~ 132 (233)
T 1ii5_A 91 YFS----------------SGIGLLI-PGTATPLFRSVGDLK---NKEVAVVRDTTAVDWAN 132 (233)
T ss_dssp CEE----------------EEEEEEE-EGGGTTTCSSGGGGT---TCEEEEETTSHHHHHHH
T ss_pred eee----------------cCeEEEE-ECCCCCCCCCHHHhC---CCeEEEECCccHHHHHH
Confidence 110 0111222 33333 899999997 47999999998876653
No 192
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=82.67 E-value=0.15 Score=50.50 Aligned_cols=101 Identities=13% Similarity=0.169 Sum_probs=64.0
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccc--cccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVN--EAVS 757 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~ 757 (821)
|+..|+..|+++.+++++|++++++.. .|..++..+.++..+.++. +.++ +.+. -.+|
T Consensus 35 g~~~G~~vdl~~~ia~~lg~~~~~~~~-------------~~~~~~~~l~~g~~d~~~~~~~~t------~eR~~~~~fs 95 (243)
T 4h5g_A 35 NQVVGADIDMAQAIADELGVKLEILSM-------------SFDNVLTSLQTGKADLAVAGISAT------DERKEVFDFS 95 (243)
T ss_dssp EEEESHHHHHHHHHHHHHTSEEEEEEC-------------CGGGHHHHHHTTSCSEECSSCBCC------HHHHTTEEEC
T ss_pred CcEEEeHHHHHHHHHHHhCCceEEecc-------------cHHHHHHHHHcCCCCcccccccCC------hhHccEEEcc
Confidence 346799999999999999999998753 3888888888776553321 1111 0000 0011
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 758 TRLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 758 ~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
..+... =.++++.......+++++||.. .++|+..++....++
T Consensus 96 ~py~~~----------------~~~~~v~~~~~~~~~~~~dl~g---~~i~v~~g~~~~~~l 138 (243)
T 4h5g_A 96 IPYYEN----------------KISFLVHKADVEKYKDLTSLES---ANIAAQKGTVPESMV 138 (243)
T ss_dssp SCSBCC----------------CEEEEEEGGGTTTCCSHHHHHT---SEEEEETTSHHHHHH
T ss_pred CccccC----------------cccccccccccccccccccCCC---CEEEecCCcHHHHHH
Confidence 111111 1123344555678999999984 799999998876654
No 193
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=82.36 E-value=8.2 Score=37.14 Aligned_cols=70 Identities=23% Similarity=0.253 Sum_probs=51.1
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-..++..+.++. ++++++... +...++++|.+|++|+++.... .....+. +.++.....+
T Consensus 32 ~~l~~~l~~f~~~~P~i~l~~~~~-------------~~~~~~~~l~~g~~Dl~i~~~~---~~~~~~~-~~~l~~~~~~ 94 (241)
T 3oxn_A 32 TILPFALPRIYQEAPNVSFNFLPL-------------QHDRLSDQLTYEGADLAICRPT---GPVEPLR-SEILGRVGVL 94 (241)
T ss_dssp HTHHHHHHHHHHHCTTCEEEEEEC-------------CGGGHHHHHHTSCCSEEEECCS---SCCTTEE-EEEEECCCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC-------------CcccHHHHHHcCCCCEEEecCC---CCCccce-eEEeecccEE
Confidence 45578888888775 788888743 5678999999999999986332 2223333 4678889999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 95 ~v~~~~hp 102 (241)
T 3oxn_A 95 CLLSKQHP 102 (241)
T ss_dssp EEEETTSG
T ss_pred EEEeCCCC
Confidence 99987754
No 194
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=82.30 E-value=0.25 Score=49.48 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=62.5
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeee-ehhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFIL-FFIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++.. .|..+...+.++..+.++ .+.++- -......++..
T Consensus 41 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~t~----~r~~~~~fs~p 103 (268)
T 3hv1_A 41 GSYIGFDIDLANAVFKLYGIDVEWQAI-------------DWDMKETELKNGTIDLIWNGYSVTD----ERKQSADFTEP 103 (268)
T ss_dssp SCEECHHHHHHHHHHHTTTCEEEEEEC-------------CGGGHHHHHHHTSCSEECSSCBCCH----HHHTTCEECCC
T ss_pred CCEEEehHHHHHHHHHHhCCcEEEEEC-------------CHHHHHHHHHCCCCCEEEecCccCH----HHHhcCcCcHH
Confidence 567899999999999999999998753 288888888888776433 111110 00000001111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+....+ .+++ .+. .+|++++||. +.++|+..+++...+|
T Consensus 104 ~~~~~~----------------~~~~-~~~-~~i~~~~dL~---g~~i~v~~g~~~~~~l 142 (268)
T 3hv1_A 104 YMVNEQ----------------VLVT-KKS-SGIDSVAGMA---GKTLGAQAGSSGYDAF 142 (268)
T ss_dssp CEEECE----------------EEEE-EGG-GCCCSSGGGT---TCCEEEETTCHHHHHH
T ss_pred HeeCce----------------EEEE-ECC-CCCCCHHHhC---CCEEEEEeCCchHHHH
Confidence 111111 1122 332 3899999997 5799999999887543
No 195
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=82.01 E-value=5.4 Score=38.64 Aligned_cols=124 Identities=20% Similarity=0.240 Sum_probs=65.3
Q ss_pred HHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCE
Q psy16206 56 LMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDT 135 (821)
Q Consensus 56 ~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~ 135 (821)
.+..|...|+++|+-+..+. .++..+-+..++|++... ++.+..+...+ ++
T Consensus 67 ~~~~l~~~g~d~iviaCnta--~~~~~l~~~~~iPvi~i~--------------------------~~~~~~a~~~~-~r 117 (228)
T 2eq5_A 67 LAKEFEREGVDAIIISCAAD--PAVEKVRKLLSIPVIGAG--------------------------SSVSALALAYG-RR 117 (228)
T ss_dssp HHHHHHHTTCSEEEECSTTC--TTHHHHHHHCSSCEEEHH--------------------------HHHHHHHHTTC-SS
T ss_pred HHHHHHHCCCCEEEEeCCch--HHHHHHHHhCCCCEeCcc--------------------------HHHHHHHHHhC-Ce
Confidence 34455556999999777666 444555566778877641 11111122345 77
Q ss_pred EEEEEecCCchhHHHHHH-HhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHHHHhhcCCCcEEEEeCChhHHHHHHHH
Q psy16206 136 FTIIYETHDNLVYLQQVL-ENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQ 212 (821)
Q Consensus 136 v~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~l~~ 212 (821)
|+|+..........++.+ +..+. +....+.. ....+... ...+...++++.+.++|.||+.|..-.+..+..+
T Consensus 118 igVlat~~t~~~~~~~~~~~~~g~---~~~~~~~~-~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~t~~~~~~ 193 (228)
T 2eq5_A 118 VGVLNLTEETPKVIRSILGNNLIA---EDHPSGVS-NTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMSTIGIAPV 193 (228)
T ss_dssp EEEECSSSCCCHHHHHHHGGGEEE---EECCTTCC-SGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHHHHTCHHH
T ss_pred EEEEecCcccHHHHHHHHHHHhCc---cccCCcee-eHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHH
Confidence 888877655444566666 55540 00011100 00001000 1224456666766789999999987553333333
No 196
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=81.96 E-value=23 Score=34.66 Aligned_cols=122 Identities=11% Similarity=0.115 Sum_probs=69.2
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecC------CChhHHH----HHHHHHhhcCeEEEEc
Q psy16206 1 MKIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVEN------YDSLHTA----KLMCNATSEGIAAIFG 70 (821)
Q Consensus 1 i~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~------~~~~~a~----~~a~~li~~~V~aiiG 70 (821)
|||.+|.|.+.+.+-..+.-+++.+. . ++.++.....+... .+...++ +.+.++..+|+++|+=
T Consensus 2 mrilvINPnts~~~T~~i~~~~~~~~-~-----p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~ivi 75 (245)
T 3qvl_A 2 VRIQVINPNTSLAMTETIGAAARAVA-A-----PGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVI 75 (245)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHHC-C-----TTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHhc-C-----CCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 58999999999777667776666544 1 35566655544110 1222222 2233344459999987
Q ss_pred CCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHH
Q psy16206 71 PQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQ 150 (821)
Q Consensus 71 p~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~ 150 (821)
+..+.... ..+-+..++|++... ++.+......+ ++|+|+.........++
T Consensus 76 aCnt~~~l--~~lr~~~~iPvigi~--------------------------e~~~~~a~~~~-~rigVlaT~~t~~~~~~ 126 (245)
T 3qvl_A 76 ASFGDPGL--LAARELAQGPVIGIA--------------------------EAAMHMATMVA-TRFSIVTTLPRTLIIAR 126 (245)
T ss_dssp C-CCCTTH--HHHHHHCSSCEEEHH--------------------------HHHHHHHHHHC-SCEEEEESCGGGHHHHH
T ss_pred eCCChhHH--HHHHHHcCCCEECcc--------------------------HHHHHHHHHcC-CEEEEEEcchhHHHHHH
Confidence 66665442 344455678877541 11111111123 78888887766556667
Q ss_pred HHHHhcC
Q psy16206 151 QVLENAH 157 (821)
Q Consensus 151 ~~~~~~~ 157 (821)
+.+++.+
T Consensus 127 ~~l~~~g 133 (245)
T 3qvl_A 127 HLLHQYG 133 (245)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 7777665
No 197
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=81.90 E-value=0.34 Score=47.31 Aligned_cols=102 Identities=19% Similarity=0.252 Sum_probs=61.0
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++.. .|..+...+.++..+.++. +.++-- ......++..
T Consensus 24 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~t~~----r~~~~~~s~p 86 (239)
T 1lst_A 24 GEFIGFDIDLGNEMCKRMQVKCTWVAS-------------DFDALIPSLKAKKIDAIISSLSITDK----RQQEIAFSDK 86 (239)
T ss_dssp CCEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHHHHTTSCSEECSSCBCCHH----HHHHCEECSC
T ss_pred CCEeeEHHHHHHHHHHHHCCeEEEEeC-------------CHHHHHHHHhCCCCCEEEECcCcCHH----Hhhceeeccc
Confidence 567899999999999999999988752 3888888888887664331 111100 0000000111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+....+ .+.+++..+...+++||. +.++|+..+++...++
T Consensus 87 ~~~~~~-----------------~l~~~~~~~~~~~~~dL~---g~~v~~~~g~~~~~~l 126 (239)
T 1lst_A 87 LYAADS-----------------RLIAAKGSPIQPTLESLK---GKHVGVLQGSTQEAYA 126 (239)
T ss_dssp SBCCCE-----------------EEEEETTCCCCSSHHHHT---TCEEEEETTSHHHHHH
T ss_pred ceeCce-----------------EEEEeCCCCCCCCHHHhC---CCEEEEEcCccHHHHH
Confidence 111111 122244333335999997 4789999998876654
No 198
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=81.09 E-value=0.27 Score=48.29 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=63.1
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeee-ehhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFIL-FFIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++++|++++++.. .|..+...+.++..+.++ .+.++ + .|
T Consensus 31 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~~---------~----~r 84 (242)
T 3del_B 31 GEVVGFDIDLAREISNKLGKTLDVREF-------------SFDALILNLKQHRIDAVITGMSIT---------P----SR 84 (242)
T ss_dssp SCEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHHHHTTSSSEECSSBBCC---------H----HH
T ss_pred CCEEEeeHHHHHHHHHHcCCceEEEEc-------------CHHHHHHHHhCCCcCEEEecCcCC---------H----HH
Confidence 567899999999999999999998753 388888888887766432 11111 1 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
--...| . ..|.......+.+++. ++|++++||. +.++|+..+++...++
T Consensus 85 ~~~~~~---~----p~~~~~~~~~~~~~~~-~~i~~~~dL~---g~~i~v~~g~~~~~~l 133 (242)
T 3del_B 85 LKEILM---I----PYYGEEIKHLVLVFKG-ENKHPLPLTQ---YRSVAVQTGTYQEAYL 133 (242)
T ss_dssp HTTEEE---E----EEEEEEESEEEEEEES-CCSCCCCGGG---SSCEEEETTSHHHHHH
T ss_pred Hhcccc---e----eeeecCCceEEEEeCC-CCCCCHHHhC---CCEEEEEcCcHHHHHH
Confidence 000000 0 0000000011222443 8999999997 4789999998877665
No 199
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=80.74 E-value=5.5 Score=42.93 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=41.7
Q ss_pred HHHHcCC-eEEEEEecCCcccccCCCCCcchHHHHHHHcCC----cceEEe--ccccchh-----hhcceeecc--ccee
Q psy16206 448 IANELNF-TYKFVLERENTYGTLNPQTGKWNGLIGELQEQR----ADLAIC--DLTITSE-----RRAAVDFTM--PFMT 513 (821)
Q Consensus 448 ia~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~----~Di~~~--~~~~t~~-----R~~~~~fS~--p~~~ 513 (821)
+.++.|+ +++++..+ +|..++.+|..|+ +|++.. ++.+... |.+...+.. .+..
T Consensus 59 ~f~~~Gl~~Vel~~~~------------s~~~~~~al~~G~~~~~~D~a~~~~~~~~~~~~g~~~~~~g~~~~~v~~~~~ 126 (429)
T 2i49_A 59 FFAKYGMTGVEVSKQA------------NWASARDNVTIGSQGGGIDGGQWQMPMPHLITEGIITNGNKVPMYVLAQLIT 126 (429)
T ss_dssp HHHHTTCCEEEEEECS------------SHHHHHHHHHHTGGGTSCSEEEECTTHHHHHHTTTTTTTCCCCEEEEEECCB
T ss_pred hHHHcCCCeeEEEEcC------------CHHHHHHHHHcCCCCCceeEEEeccHHHHHHHcCccccCCCCCEEEEEEecc
Confidence 3455799 99998654 7999999999999 999874 3333222 223333322 2334
Q ss_pred eceEEEEEcC
Q psy16206 514 LGISILYRKP 523 (821)
Q Consensus 514 ~~~~l~~~~~ 523 (821)
.+.+++++++
T Consensus 127 ~g~~i~v~~~ 136 (429)
T 2i49_A 127 QGNGIAVAPM 136 (429)
T ss_dssp CCEEEEECGG
T ss_pred CCcEEEEecc
Confidence 5677888765
No 200
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=80.55 E-value=0.23 Score=49.97 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=62.3
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++.. .|..++..+.++..+.++. +.+ .| .|
T Consensus 44 g~~~G~~~dl~~~i~~~~g~~v~~~~~-------------~~~~~~~~l~~G~~D~~~~~~~~---------t~----~r 97 (271)
T 2iee_A 44 DKLTGYEVEVVREAAKRLGLKVEFKEM-------------GIDGMLTAVNSGQVDAAANDIDV---------TK----DR 97 (271)
T ss_dssp CEEECHHHHHHHHHHHHTTCEEEEEEC-------------CSTTHHHHHHHTSSSEECSSCBC---------CH----HH
T ss_pred CCceeeHHHHHHHHHHHcCCeEEEEEC-------------CHHHHHHHHHCCCcCEEEeCCcC---------Ch----hh
Confidence 456799999999999999999988763 2788888888877664331 111 11 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCC-CCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNP-PIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~-~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
--...| + ..|...-..++ +.+..+ +|++++||. +.++|+.++++...+|
T Consensus 98 ~~~~~f---s----~p~~~~~~~l~-~~~~~~~~i~~~~dL~---g~~i~v~~g~~~~~~l 147 (271)
T 2iee_A 98 EEKFAF---S----TPYKYSYGTAI-VRKDDLSGIKTLKDLK---GKKAAGAATTVYMEVA 147 (271)
T ss_dssp HTTEEE---C----CCSEEEEEEEE-ECTTTGGGCSSGGGGT---TCEEESCTTSHHHHHH
T ss_pred ccceEE---e----ecceeCCeEEE-EECCCCCCCCCHHHhC---CCEEEEeCCccHHHHH
Confidence 100000 0 00000111122 233333 799999997 4799999998877665
No 201
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=80.39 E-value=0.14 Score=50.14 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=65.2
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeee-ehhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFIL-FFIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+++++|++++++.. .|..+...+.++..+.++ .+.++-- ......++..
T Consensus 35 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~t~~----r~~~~~fs~p 97 (239)
T 3kbr_A 35 GGYAGFDVDMAQRLAESLGAKLVVVPT-------------SWPNLMRDFADDRFDIAMSGISINLE----RQRQAYFSIP 97 (239)
T ss_dssp SCEESHHHHHHHHHHHHTTCEEEEEEC-------------CTTTHHHHHHTTCCSEECSSCBCCHH----HHTTCEECSC
T ss_pred CCEEeehHHHHHHHHHHHCCceEEEEe-------------CHHHHHHHHHCCCcCEEEeCCcCCHH----HcCccccchH
Confidence 567899999999999999999998763 378888888887766442 1111100 0000001111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+....+ .+++......+|++++||.. .+.++|+..+++...++
T Consensus 98 ~~~~~~----------------~~~~~~~~~~~i~~~~dL~~-~g~~v~~~~g~~~~~~l 140 (239)
T 3kbr_A 98 YLRDGK----------------TPITLCSEEARFQTLEQIDQ-PGVTAIVNPGGTNEKFA 140 (239)
T ss_dssp SEEECE----------------EEEEEGGGGGGGSSHHHHSS-TTCEEEECTTSHHHHHH
T ss_pred HhccCc----------------EEEEECCcccccCCHHHhcC-CCcEEEEcCCCcHHHHH
Confidence 111111 12333333458999999983 46899999999877665
No 202
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=79.91 E-value=13 Score=35.88 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=24.7
Q ss_pred HHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 57 MCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 57 a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
+..|...|+.+|+-+..+.... +..+-+..++|++..
T Consensus 66 ~~~L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i 102 (226)
T 2zsk_A 66 AKALERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI 102 (226)
T ss_dssp HHHHHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH
T ss_pred HHHHHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc
Confidence 3334445999999888776543 455556678888764
No 203
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=79.28 E-value=23 Score=35.67 Aligned_cols=121 Identities=7% Similarity=-0.096 Sum_probs=75.0
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHHHHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIE 81 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~~v~ 81 (821)
|||.+.......-..|++.++++.|- . +....... +..++..+.+++.+|+.+++.||+...... +..+.
T Consensus 128 ~Ig~i~g~~~~~r~~Gf~~~~~~~~~-------~-~~~~~~~~-~~~~~~~g~~~a~~ll~~~~daI~~~~D~~-a~Gv~ 197 (296)
T 2hqb_A 128 KVGVIAAFPWQPEVEGFVDGAKYMNE-------S-EAFVRYVG-EWTDADKALELFQELQKEQVDVFYPAGDGY-HVPVV 197 (296)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHTTC-------C-EEEEEECS-SSSCHHHHHHHHHHHHTTTCCEEECCCTTT-HHHHH
T ss_pred eEEEEcCcCchhhHHHHHHHHHHhCC-------C-eEEEEeec-cccCHHHHHHHHHHHHHCCCcEEEECCCCC-CHHHH
Confidence 57888754432256889999888652 2 33332221 224677888999999988999999766554 34445
Q ss_pred HHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCCCCE
Q psy16206 82 SMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDT 135 (821)
Q Consensus 82 ~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~w~~ 135 (821)
..+.+.++.+|.+...... ....|.+..+..+-...+...++.+..-.|+.
T Consensus 198 ~a~~e~Gv~viG~D~~~~~---~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 198 EAIKDQGDFAIGYVGDQAD---LGGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHTCEEEEEESCCSS---SSCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHcCCEEEEEecchhh---hCCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 5667778888988653322 11234555566665555555555555445643
No 204
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=79.19 E-value=0.31 Score=47.06 Aligned_cols=104 Identities=15% Similarity=0.293 Sum_probs=60.8
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++... .|..+...+.++..+..+. +.++ + .|
T Consensus 21 g~~~G~~~dl~~~~~~~~g~~~~~~~~~------------~~~~~~~~l~~g~~D~~~~~~~~~---------~----~r 75 (228)
T 2pyy_A 21 GELSGFSIDLWRSIATQIGIESKLIEYS------------SVPELISAIKDNKVNLGIAAISIT---------A----ER 75 (228)
T ss_dssp --CBSHHHHHHHHHHHHHTCCEEEEECS------------SHHHHHHHHHTTSCSEECSSCBCC---------H----HH
T ss_pred CceEEEeHHHHHHHHHHhCCcEEEEEcC------------CHHHHHHHHHCCCcCEEEeccccC---------H----HH
Confidence 4678999999999999999999887643 2677777887776664321 1110 0 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCC---CCCCChhhhhhcCceeEEEEecCccccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMN---PPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~---~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~ 820 (821)
--...| + ...|+.. ..+++ ++.. .+|++++||. +.++|+..+++...+++
T Consensus 76 ~~~~~~---~---~p~~~~~-~~~~~-~~~~~~~~~~~~~~dL~---g~~i~~~~g~~~~~~l~ 128 (228)
T 2pyy_A 76 EQNFDF---S---LPIFASG-LQIMV-RNLESGTGDIRSIDDLP---GKVVATTAGSTAATYLR 128 (228)
T ss_dssp HHHSEE---C---SCSEEEE-EEEEE-EC-----CCCCSGGGCT---TCEEEEETTSHHHHHHH
T ss_pred Hcccee---c---ccchhcc-eEEEE-ECCccccCCcCCHHHcC---CCeEEEEcCcHHHHHHH
Confidence 000000 0 0000001 11222 3322 4899999997 47999999998776653
No 205
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=79.05 E-value=0.54 Score=45.42 Aligned_cols=102 Identities=15% Similarity=0.264 Sum_probs=60.9
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeee-ehhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFIL-FFIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++.. .|..+...+.++..+.++ .+.++ + .|
T Consensus 26 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~~---------~----~r 79 (229)
T 2y7i_A 26 NKIVGFDIDVANAVCKEMQAECSFTNQ-------------SFDSLIPSLRFKKFDAVIAGMDMT---------P----KR 79 (229)
T ss_dssp SCEESHHHHHHHHHHHHTTCEEEEEEC-------------CGGGHHHHHHTTSCSEECSSCBCC---------H----HH
T ss_pred CCCcceeHHHHHHHHHHhCCeEEEEEc-------------CHHHHHHHHhCCCceEEEecCccC---------H----HH
Confidence 567899999999999999999988752 377788888877666432 11110 1 01
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCccccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~ 820 (821)
--...| + ..|.......+-+.+.. |++++||. +.++|+..+++...+++
T Consensus 80 ~~~~~~---s----~p~~~~~~~~~~~~~~~--~~~~~dL~---g~~v~~~~g~~~~~~l~ 128 (229)
T 2y7i_A 80 EQQVSF---S----QPYYEGLSAVVVTRKGA--YHTFADLK---GKKVGLENGTTHQRYLQ 128 (229)
T ss_dssp HTTSEE---C----SCSBCCCCEEEEEETTS--CCSTGGGT---TCEEEEETTSHHHHHHH
T ss_pred hcceee---c----cccccCCcEEEEEeCCC--CCCHHHHC---CCEEEEecCCcHHHHHH
Confidence 000000 0 00000000112223323 99999997 47999999988776653
No 206
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=79.01 E-value=8.2 Score=30.33 Aligned_cols=102 Identities=10% Similarity=0.107 Sum_probs=66.0
Q ss_pred CCccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHH
Q psy16206 106 NGVHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPL 185 (821)
Q Consensus 106 ~~~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~ 185 (821)
.+.|-+|+.-+....-..+.++++.|+-+-|.++.+|.++....-.+.+.++ ..+.+..|+.+..-....
T Consensus 24 kngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslg----------aqvliiiydqdqnrleef 93 (134)
T 2l69_A 24 KNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLG----------AQVLIIIYDQDQNRLEEF 93 (134)
T ss_dssp HTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHC----------CCCEEEEECSCHHHHHHH
T ss_pred hcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcC----------CeEEEEEEeCchhHHHHH
Confidence 3567889998888888899999999997777777777667666666777776 345555565544444455
Q ss_pred HHHhhcCCCcEEEEeCChhHHH-HHHHHHHHccc
Q psy16206 186 LKEIKNSSESHILLDCSMDKTV-TILKQAKEVHL 218 (821)
Q Consensus 186 l~~lk~~~~~~ivl~~~~~~~~-~~l~~a~~~g~ 218 (821)
-.+++..+-.+=-+ .++++.. .+-+-.++.|-
T Consensus 94 srevrrrgfevrtv-tspddfkkslerlirevgs 126 (134)
T 2l69_A 94 SREVRRRGFEVRTV-TSPDDFKKSLERLIREVGS 126 (134)
T ss_dssp HHHHHHTTCCEEEE-SSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCceEEEe-cChHHHHHHHHHHHHHhcc
Confidence 55666666555444 3444433 33344455554
No 207
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=78.86 E-value=15 Score=38.01 Aligned_cols=88 Identities=10% Similarity=0.012 Sum_probs=54.6
Q ss_pred eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEecccc-chhhhcceeec---ccceee
Q psy16206 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTI-TSERRAAVDFT---MPFMTL 514 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~-t~~R~~~~~fS---~p~~~~ 514 (821)
|+-+-.-+=+.++.|++++++..+ ++..++.+|..|++|+++++... ...|.+..... .-+...
T Consensus 23 p~~vA~~kG~f~e~GLdVei~~~~------------~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~~~~~~~ 90 (342)
T 4esw_A 23 PVYLANIKGYFKDENLDIAILEPS------------NPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSLLDEP 90 (342)
T ss_dssp HHHHHHHTTHHHHTTCEEEEEEES------------SGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEEEEECSC
T ss_pred HHHHHHHCCchHHcCCeEEEEeCC------------ChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEEEeccCC
Confidence 555555555677889999998765 67889999999999998764332 23455443322 122234
Q ss_pred ceEEEEEcCCCCCCCcccccccCch
Q psy16206 515 GISILYRKPAKKQPDLFSFLEPLSF 539 (821)
Q Consensus 515 ~~~l~~~~~~~~~~~~~~~l~~~~~ 539 (821)
...+++++++... .....++..+.
T Consensus 91 ~~~~~~~~~~~~~-~~~~dLkGK~i 114 (342)
T 4esw_A 91 FTGICYLEGSGIT-SDFQSLKGKRI 114 (342)
T ss_dssp CEEEEEETTSSCC-SSGGGGTTCEE
T ss_pred ccccccccccccc-CCHHHhCCCEE
Confidence 4566777665532 33344554443
No 208
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=78.02 E-value=13 Score=35.96 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 55 KLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 55 ~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
+.+..|...|+++|+-+..+.. ..+..+-+..++|++..
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i 103 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM 103 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech
Confidence 4555555559999998887765 55566667788999865
No 209
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=78.01 E-value=26 Score=35.68 Aligned_cols=123 Identities=16% Similarity=0.097 Sum_probs=74.9
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcchHH
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~~~ 78 (821)
+||.+..... ..-..|++.++++.|-. .++...... +..++..+.+++.+|+++++.+|+...... +.
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~-------~~~~~~~~~-~~~~~~~g~~~a~~ll~~~~daI~~~~d~~-a~ 201 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDPD-------IQVVVEVAN-TFSDPQKGQALAAKLYDSGVNVIFQVAGGT-GN 201 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCTT-------CEEEEEECS-CSSCHHHHHHHHHHHHHTTCCEEEEECGGG-HH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCCC-------CEEEEEEcc-CccCHHHHHHHHHHHHHCCCcEEEECCCCC-ch
Confidence 6888865433 44578999999887633 233333222 224678888999999999999999765543 33
Q ss_pred HHHHHhcc-----CCCceeeeccCCCCCC-C-CCCCccEEEEecChhhHHHHHHHHHHhCCC
Q psy16206 79 IIESMCQM-----FDIPHVEAFWDPNKYF-I-PTNGVHGVNVYPESHLISKGISVIINDMDW 133 (821)
Q Consensus 79 ~v~~i~~~-----~~iP~is~~~~~~~~~-~-~~~~~~~~r~~p~~~~~~~al~~~~~~~~w 133 (821)
.+...+.+ .++.+|.+...+.... - ....+.+..+..+-...+...++.+..=.|
T Consensus 202 Gv~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~ 263 (318)
T 2fqx_A 202 GVIKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSF 263 (318)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCC
Confidence 33344444 6788888865543200 0 003455666666666666666666655444
No 210
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=77.72 E-value=6.3 Score=37.50 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=50.6
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-..++..+.++. ++++++. .++...++++|.+|++|+++.... .....+. +.|++....+
T Consensus 21 ~~lp~~l~~f~~~~P~v~l~l~-------------~~~~~~l~~~L~~g~iDl~i~~~~---~~~~~l~-~~~l~~~~~~ 83 (218)
T 2y7p_A 21 YFMPPLMEALAQRAPHIQISTL-------------RPNAGNLKEDMESGAVDLALGLLP---ELQTGFF-QRRLFRHRYV 83 (218)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEE-------------CCCTTTHHHHHHHTSSCEEEECCT---TCCTTEE-EEEEEEECEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEE-------------eCCcccHHHHHhCCCceEEEecCC---CCCccee-EEEeeeccEE
Confidence 44567888887775 7788877 335678999999999999975322 2223344 3588999999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 84 ~v~~~~hp 91 (218)
T 2y7p_A 84 CMFRKDHP 91 (218)
T ss_dssp EEEETTCS
T ss_pred EEEcCCCC
Confidence 99998765
No 211
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=77.39 E-value=3.7 Score=39.24 Aligned_cols=73 Identities=7% Similarity=0.013 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCC-cceEEeccccchhh--hcce-e--ecccceee
Q psy16206 441 SVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQR-ADLAICDLTITSER--RAAV-D--FTMPFMTL 514 (821)
Q Consensus 441 ~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~R--~~~~-~--fS~p~~~~ 514 (821)
--++++.+.++.|+++++..- +-..++.+|.+|+ +|+++..-....++ .+.+ . -..|+...
T Consensus 14 l~~~~~~F~~~p~i~v~~~~~-------------~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (231)
T 1atg_A 14 LEQLAGQFAKQTGHAVVISSG-------------SSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIG 80 (231)
T ss_dssp HHHHHHHHHHHHCCCEEEEEE-------------CHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEEC
T ss_pred HHHHHHHHHhccCCeEEEEEC-------------CcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeee
Confidence 346788888888999988642 4577899999998 99987532221221 1222 1 24688899
Q ss_pred ceEEEEEcCCCC
Q psy16206 515 GISILYRKPAKK 526 (821)
Q Consensus 515 ~~~l~~~~~~~~ 526 (821)
..+++++++.+.
T Consensus 81 ~~vlv~~~~~~~ 92 (231)
T 1atg_A 81 KLVLWSAKPGLV 92 (231)
T ss_dssp CEEEEESSTTTS
T ss_pred eEEEEEcCCCCC
Confidence 999999887653
No 212
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=77.29 E-value=3.5 Score=40.23 Aligned_cols=74 Identities=9% Similarity=-0.043 Sum_probs=54.1
Q ss_pred eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhh---cceeecccceeec
Q psy16206 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERR---AAVDFTMPFMTLG 515 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~---~~~~fS~p~~~~~ 515 (821)
|+--+++..+.++.|+++++... .-..++.++++|.+|+.+..-....+.. ....-..|++...
T Consensus 19 ~ll~~L~~~Fek~~gv~V~~~~~-------------gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~ 85 (236)
T 3lr1_A 19 GLLKVLLPPFEKKNNVKVDVIAV-------------GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYND 85 (236)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEEE-------------CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCeEEEEEc-------------ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCc
Confidence 66678999999998999998854 3466899999999999976443332211 1112245899999
Q ss_pred eEEEEEcCCC
Q psy16206 516 ISILYRKPAK 525 (821)
Q Consensus 516 ~~l~~~~~~~ 525 (821)
.++++|++++
T Consensus 86 lVlV~P~~~P 95 (236)
T 3lr1_A 86 FVIVGPKNDP 95 (236)
T ss_dssp EEEEECTTCT
T ss_pred EEEEEECCCh
Confidence 9999998865
No 213
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=76.26 E-value=34 Score=32.83 Aligned_cols=135 Identities=10% Similarity=0.084 Sum_probs=85.5
Q ss_pred EEEEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecC
Q psy16206 38 LEPIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPE 116 (821)
Q Consensus 38 l~~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~ 116 (821)
.++.+.+ ++-..++..+++++.. |+++||.-.++ +. -+-+..++|+|... .+
T Consensus 39 ~~I~vi~---~~le~av~~a~~~~~~~~~dVIISRGgt--a~---~Lr~~~~iPVV~I~-------------------vs 91 (225)
T 2pju_A 39 ANITPIQ---LGFEKAVTYIRKKLANERCDAIIAAGSN--GA---YLKSRLSVPVILIK-------------------PS 91 (225)
T ss_dssp CEEEEEC---CCHHHHHHHHHHHTTTSCCSEEEEEHHH--HH---HHHTTCSSCEEEEC-------------------CC
T ss_pred ceEEEec---CcHHHHHHHHHHHHhcCCCeEEEeCChH--HH---HHHhhCCCCEEEec-------------------CC
Confidence 4455554 5667788889998876 79999954332 22 23455679988763 12
Q ss_pred hhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcE
Q psy16206 117 SHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESH 196 (821)
Q Consensus 117 ~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ 196 (821)
.....+++... +.++ ++++++.-... ...++.+-+-.+ ..+....+.. .++....++++++.+.++
T Consensus 92 ~~Dil~aL~~a-~~~~-~kIavVg~~~~-~~~~~~i~~ll~----------~~i~~~~~~~-~ee~~~~i~~l~~~G~~v 157 (225)
T 2pju_A 92 GYDVLQFLAKA-GKLT-SSIGVVTYQET-IPALVAFQKTFN----------LRLDQRSYIT-EEDARGQINELKANGTEA 157 (225)
T ss_dssp HHHHHHHHHHT-TCTT-SCEEEEEESSC-CHHHHHHHHHHT----------CCEEEEEESS-HHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHH-HhhC-CcEEEEeCchh-hhHHHHHHHHhC----------CceEEEEeCC-HHHHHHHHHHHHHCCCCE
Confidence 22344565554 3455 68998877654 222333333333 4466555544 578899999999999999
Q ss_pred EEEeCChhHHHHHHHHHHHcccc
Q psy16206 197 ILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 197 ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
||-.. ...+.|.+.||.
T Consensus 158 VVG~~------~~~~~A~~~Gl~ 174 (225)
T 2pju_A 158 VVGAG------LITDLAEEAGMT 174 (225)
T ss_dssp EEESH------HHHHHHHHTTSE
T ss_pred EECCH------HHHHHHHHcCCc
Confidence 87533 346677888874
No 214
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=74.86 E-value=2.8 Score=34.85 Aligned_cols=39 Identities=18% Similarity=-0.021 Sum_probs=35.5
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTR 788 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~ 788 (821)
.+.|.+..+|+++..|+++.+.+.+..++.+++.++..+
T Consensus 59 Di~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 59 DRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp SSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999887654
No 215
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=74.71 E-value=5 Score=39.16 Aligned_cols=74 Identities=9% Similarity=0.029 Sum_probs=53.3
Q ss_pred eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhh---cceeecccceeec
Q psy16206 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERR---AAVDFTMPFMTLG 515 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~---~~~~fS~p~~~~~ 515 (821)
|+--+++..+.++.|+++++... .-..++.++++|.+|+.+..-...++.. ....-..|++...
T Consensus 19 ~ll~~L~~~Fek~~gv~V~~~~~-------------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~ 85 (237)
T 3muq_A 19 GLLDYLLPQFEKDTGYKVDVIAA-------------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYND 85 (237)
T ss_dssp THHHHHHHHHHHHHCCEEEEEEE-------------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHhCceEEEEEc-------------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCC
Confidence 56678999999999999888754 3456889999999999976443322211 1112246899999
Q ss_pred eEEEEEcCCC
Q psy16206 516 ISILYRKPAK 525 (821)
Q Consensus 516 ~~l~~~~~~~ 525 (821)
.+++++++++
T Consensus 86 lVlV~P~~~P 95 (237)
T 3muq_A 86 FVIVGPKADP 95 (237)
T ss_dssp EEEEECTTCT
T ss_pred EEEEEeCCCh
Confidence 9999998765
No 216
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=74.67 E-value=17 Score=36.33 Aligned_cols=127 Identities=11% Similarity=0.148 Sum_probs=71.5
Q ss_pred HHHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHhCC
Q psy16206 53 TAKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMD 132 (821)
Q Consensus 53 a~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~~~ 132 (821)
..+.+..|.++|+.+|+-+..+..+.++..+-+..++|+|... -.++...+..-+
T Consensus 58 ~~~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigii-------------------------ep~~~~A~~~~~ 112 (276)
T 2dwu_A 58 VFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVI-------------------------HPGARAAIKVTK 112 (276)
T ss_dssp HHHHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESH-------------------------HHHHHHHHHHCS
T ss_pred HHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEecc-------------------------HHHHHHHHHhcC
Confidence 3444555656699999998888776677777777888888531 011111122234
Q ss_pred CCEEEEEEecCC-chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCC-------C-------CCChHHHHHHhhcCCCcEE
Q psy16206 133 WDTFTIIYETHD-NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPP-------D-------TDDYRPLLKEIKNSSESHI 197 (821)
Q Consensus 133 w~~v~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-------~-------~~d~~~~l~~lk~~~~~~i 197 (821)
-++|+|+..... .....++.++..+ . +..+.....+. + ...+...++.+++.++|.|
T Consensus 113 ~~rIgVlaT~~T~~s~~y~~~i~~~~-------~-~~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~I 184 (276)
T 2dwu_A 113 KGKIGVIGTVGTIQSNMYEKALHELD-------T-YLKVHSHACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTL 184 (276)
T ss_dssp SSEEEEEECHHHHHTTHHHHHHHHHC-------T-TCEEEEEECTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEE
T ss_pred CCeEEEEeChhhhhhHHHHHHHHHhC-------C-CCEEEeeeCHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEE
Confidence 567777765543 2224455555543 2 23332222221 0 1124556677777789999
Q ss_pred EEeCCh-hHHHHHHHH
Q psy16206 198 LLDCSM-DKTVTILKQ 212 (821)
Q Consensus 198 vl~~~~-~~~~~~l~~ 212 (821)
|+.|.. +.....+++
T Consensus 185 VLGCTh~p~l~~~i~~ 200 (276)
T 2dwu_A 185 ILGCTHYPLLESYIKK 200 (276)
T ss_dssp EECSTTGGGGHHHHHH
T ss_pred EECCCCHHHHHHHHHH
Confidence 998875 444444443
No 217
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=74.59 E-value=6.4 Score=38.58 Aligned_cols=68 Identities=7% Similarity=-0.026 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEecccc-----chhhhcceeecccceeece
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTI-----TSERRAAVDFTMPFMTLGI 516 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~-----t~~R~~~~~fS~p~~~~~~ 516 (821)
.+.++.++++.|++++++.+. +|.....+|.+|++|+....... +.++...+....+....+.
T Consensus 26 l~~v~~~~~k~Gi~veiv~F~------------Dy~~pN~AL~~G~iDaN~fQh~pyL~~~~k~~g~~lv~v~~~~~~p~ 93 (252)
T 4ib2_A 26 LEQAKSILKKEGYQLEVTVFD------------DYVQPNEVVESGEFDANYFQHVPYLESFNEEKGTHLVDAGDIHYEPF 93 (252)
T ss_dssp HHHHHHHHHHTTCEEEEEECS------------SSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHHCCCEEEEEEEEECCC
T ss_pred HHHHHHHHHhcCCeEEEEEec------------ChhhHHHHHHcCCcCeeecCCHHHHHHHHHHCCCCEEEEeeccccce
Confidence 355677778889999999886 68889999999999997542221 1222222333335566666
Q ss_pred EEEEE
Q psy16206 517 SILYR 521 (821)
Q Consensus 517 ~l~~~ 521 (821)
.++.+
T Consensus 94 glyS~ 98 (252)
T 4ib2_A 94 GIYPG 98 (252)
T ss_dssp EEEES
T ss_pred EeecC
Confidence 77654
No 218
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=73.80 E-value=7.1 Score=39.07 Aligned_cols=115 Identities=7% Similarity=0.036 Sum_probs=67.0
Q ss_pred HHHHHhhcCeEEEEcCCCcchHH--------HHHHHhccC-----CCceeeeccCCCCCCCCCCCccEEEEecChhhHHH
Q psy16206 56 LMCNATSEGIAAIFGPQSIENRN--------IIESMCQMF-----DIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISK 122 (821)
Q Consensus 56 ~a~~li~~~V~aiiGp~~s~~~~--------~v~~i~~~~-----~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~ 122 (821)
++.+|...|+++|+-++.+.... .+..+.+.. ++|+++. +.
T Consensus 82 aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~--------------------------~~ 135 (273)
T 2xed_A 82 CVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS--------------------------AG 135 (273)
T ss_dssp HHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH--------------------------HH
T ss_pred HHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH--------------------------HH
Confidence 44555555999998777664221 123333444 6777653 24
Q ss_pred HHHHHHHhCCCCEEEEEEecCCch-hHHHHHHHhcCCCCCcCCCCCCeEEE-EEcCC---------CCCChHHHHHHhhc
Q psy16206 123 GISVIINDMDWDTFTIIYETHDNL-VYLQQVLENAHDDDKEIRPGRPSVTI-RQLPP---------DTDDYRPLLKEIKN 191 (821)
Q Consensus 123 al~~~~~~~~w~~v~ii~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~v~~-~~~~~---------~~~d~~~~l~~lk~ 191 (821)
+++..++..|-+||+|+....... ..+++.++..+ +.+.. ..... +...+.+.++++..
T Consensus 136 A~~~al~~~g~~rvgvltp~~~~~~~~~~~~l~~~G----------i~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~ 205 (273)
T 2xed_A 136 ALVEGLRALDAQRVALVTPYMRPLAEKVVAYLEAEG----------FTISDWRALEVADNTEVGCIPGEQVMAAARSLDL 205 (273)
T ss_dssp HHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHHHTT----------CEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCeEEEEcCChhhhHHHHHHHHHHCC----------CEEeccccCCCccchhhcccCHHHHHHHHHHHhh
Confidence 455555667778999997544433 35666666654 44432 22211 01235556667766
Q ss_pred CCCcEEEEe-CChhHH
Q psy16206 192 SSESHILLD-CSMDKT 206 (821)
Q Consensus 192 ~~~~~ivl~-~~~~~~ 206 (821)
.++++||+. |..-..
T Consensus 206 ~gadaIvLg~CT~l~~ 221 (273)
T 2xed_A 206 SEVDALVISCAVQMPS 221 (273)
T ss_dssp TTCSEEEEESSSSSCC
T ss_pred CCCCEEEEcCCCCcch
Confidence 689999999 886443
No 219
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=71.74 E-value=34 Score=33.88 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 54 AKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 54 ~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
.+.+..|..+|+.+|+-++.+..+.++..+-+..++|+|..
T Consensus 55 ~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi 95 (267)
T 2gzm_A 55 WEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGV 95 (267)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee
Confidence 34455555669999998888877666777778889998874
No 220
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=71.64 E-value=36 Score=27.60 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=64.9
Q ss_pred EEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhh
Q psy16206 111 VNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIK 190 (821)
Q Consensus 111 ~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk 190 (821)
|-...++...-.-+..-++..| -+|.++|+|.+.... ++-+++.. ..|..+ ..... ..||+..+.+|-
T Consensus 5 fvvfssdpeilkeivreikrqg-vrvvllysdqdekrr-rerleefe-------kqgvdv--rtved-kedfrenireiw 72 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDEKRR-RERLEEFE-------KQGVDV--RTVED-KEDFRENIREIW 72 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCHHHH-HHHHHHHH-------TTTCEE--EECCS-HHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchHHHH-HHHHHHHH-------HcCCce--eeecc-HHHHHHHHHHHH
Confidence 3444555555566666677777 688899988764332 33344443 335444 34333 678999998887
Q ss_pred cC--CCcEEEEeCCh--hHHHHHHHHHHHccccCcceEEEEec
Q psy16206 191 NS--SESHILLDCSM--DKTVTILKQAKEVHLMGDYQNYILSL 229 (821)
Q Consensus 191 ~~--~~~~ivl~~~~--~~~~~~l~~a~~~g~~~~~~~~i~~~ 229 (821)
.. .-+++++.... .-...|+..|++.|.. .+++.+
T Consensus 73 erypqldvvvivttddkewikdfieeakergve----vfvvyn 111 (162)
T 2l82_A 73 ERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVE----VFVVYN 111 (162)
T ss_dssp HHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCE----EEEEEE
T ss_pred HhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcE----EEEEec
Confidence 65 45666655443 4478899999999873 455544
No 221
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=71.41 E-value=11 Score=35.53 Aligned_cols=70 Identities=13% Similarity=0.170 Sum_probs=49.1
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. +.++++.. ++...++++|.+|++|+++.... .....+. +.|+.....+
T Consensus 18 ~~l~~~l~~f~~~~P~v~l~l~~-------------~~~~~~~~~l~~g~~Dl~i~~~~---~~~~~l~-~~~l~~~~~~ 80 (219)
T 1i6a_A 18 YLLPHIIPMLHQTFPKLEMYLHE-------------AQTHQLLAQLDSGKLDAVILALV---KESEAFI-EVPLFDEPML 80 (219)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-------------CCHHHHHHHHHHTSCSEEEEECC---GGGTTSE-EEEEEEEEEE
T ss_pred hhhhHHHHHHHHHCCCeEEEEEE-------------CChHHHHHHHHcCCeeEEEecCC---CCCCCcc-eeeeecccEE
Confidence 44567888887776 66777663 35788999999999999975322 1122233 3588889999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 81 ~v~~~~hp 88 (219)
T 1i6a_A 81 LAIYEDHP 88 (219)
T ss_dssp EEEETTSG
T ss_pred EEEcCCCc
Confidence 99987654
No 222
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=69.99 E-value=0.84 Score=45.32 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=63.6
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++.. .|..+...+.++..+.++. +.+ .+ .|
T Consensus 51 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~---------~~----~r 104 (268)
T 3qax_A 51 GEVVGFDIDLAKAISEKLGKQLEVREF-------------AFDALILNLKKHRIDAILAGMSI---------TP----SR 104 (268)
T ss_dssp SCEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHHHHHTSSSEECSCCBC---------CH----HH
T ss_pred CCEEEEEHHHHHHHHHHhCCeEEEEec-------------CHHHHHHHHhCCCccEEeecCcc---------CH----hH
Confidence 566899999999999999999988753 3778888888877664321 111 01 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCccccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFFK 820 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~~ 820 (821)
--...| ...|.......+.+++..++|++++||. +.++|+..+++...+++
T Consensus 105 ~~~~~~-------~p~~~~~~~~~~~~~~~~~~i~~~~dL~---g~~i~~~~g~~~~~~l~ 155 (268)
T 3qax_A 105 QKEIAL-------LPYYGDEVQELMVVSKRSLETPVLPLTQ---YSSVAVQTGTYQEHYLL 155 (268)
T ss_dssp HTTSEE-------EEEECCCBCEEEEEEETTSCSCCCCGGG---SSCEEEETTSHHHHHHH
T ss_pred hcceee-------ecceecccceEEEEECCCCCCCCHHHhC---CCEEEEecCcHHHHHHH
Confidence 000000 0000000011123345448999999998 46899999988776653
No 223
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=69.74 E-value=3.6 Score=35.43 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=35.1
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNT 787 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~ 787 (821)
...|.+..+|+++..|+++++++.+..++++++.++..
T Consensus 80 Di~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 80 DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998754
No 224
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=69.23 E-value=36 Score=34.15 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 53 TAKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 53 a~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
..+.+..|..+|+.+|+-++.+..+.++..+-+..++|+|..
T Consensus 75 ~~~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigi 116 (290)
T 2vvt_A 75 TWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGV 116 (290)
T ss_dssp HHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEcc
Confidence 344455566669999998888877667777778888998873
No 225
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=68.81 E-value=0.29 Score=48.90 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=62.1
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++.. .|..+...+.++..+..+. +.++- .......++..
T Consensus 62 g~~~G~~~dl~~~~~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~~~~~~~~~~----~r~~~~~~s~p 124 (269)
T 4i62_A 62 NQIVGSDIELAKAIATELGVELELSPM-------------SFDNVLASVQSGKADLAISGVSKTD----ERSKVFDFSTP 124 (269)
T ss_dssp EEEESHHHHHHHHHHHHHTCEEEEEEC-------------CHHHHHHHHHTTSCSEECSSCBCCH----HHHTTEEECSC
T ss_pred CcEeeecHHHHHHHHHHHCCceEEEEc-------------CHHHHHHHHhCCCccEEecCCcCCH----hHhhceecccc
Confidence 346799999999999999999998753 2777778887776664221 11100 00000000111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+.... ..+++.+....+|++++||. +.++|+..+++...++
T Consensus 125 ~~~~~----------------~~~~~~~~~~~~i~~~~dL~---g~~i~~~~g~~~~~~l 165 (269)
T 4i62_A 125 YYTAK----------------NKLIVKKSDLATYQSVNDLA---QKKVGAQKGSIQETMA 165 (269)
T ss_dssp CEECC----------------EEEEEEGGGTTTCSSGGGGC----CEEEEETTSHHHHHH
T ss_pred hhhcc----------------eEEEEECCccccccCHHHhC---CCeEEEecCchHHHHH
Confidence 11111 12233334447899999997 5899999998877665
No 226
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=68.35 E-value=4.3 Score=35.81 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=35.7
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTR 788 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~ 788 (821)
.+.|.+..+|+++..|+++++.+++..++.++++++..+
T Consensus 62 Di~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 62 DIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999987544
No 227
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=68.25 E-value=0.86 Score=45.63 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=60.9
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++.. .|..+...+.++..+..+. +.++- -......++..
T Consensus 61 g~~~G~~~dl~~~i~~~~g~~v~~~~~-------------~~~~~~~~l~~G~~D~~~~~~~~~~----~r~~~~~~s~p 123 (272)
T 2pvu_A 61 GKIVGFDVDLLDAVMKAAGLDYELKNI-------------GWDPLFASLQSKEVDMGISGITITD----ERKQSYDFSDP 123 (272)
T ss_dssp TEEESHHHHHHHHHHHHHTCCEEEEEC-------------CHHHHHHHHHHTSSSEECSSCBCCH----HHHTTEEECSC
T ss_pred CeEEEEHHHHHHHHHHHhCCceEEEEC-------------CHHHHHHHHhCCCCCEEEeCCcCCH----HHHhcCccchh
Confidence 556799999999999999999987642 2788888888876664331 11100 00000000111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+....+ .+.+++ ..+|++++||. +.++|+..+++...++
T Consensus 124 ~~~~~~-----------------~l~~~~-~~~i~~~~dL~---g~~i~~~~g~~~~~~l 162 (272)
T 2pvu_A 124 YFEATQ-----------------VILVKQ-GSPVKNALDLK---GKTIGVQNATTGQEAA 162 (272)
T ss_dssp CEEECE-----------------EEEEET-TCCCCSGGGGT---TSCEEEETTSHHHHHH
T ss_pred hhccce-----------------EEEEEC-CCCCCCHHHhC---CCeEEEEcCchHHHHH
Confidence 110011 122233 34599999997 4689999988876654
No 228
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=68.22 E-value=11 Score=36.27 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=50.0
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++.. ++..+++..|.+|++|+++..... .. .-+.|+.....+
T Consensus 40 ~~l~~~l~~f~~~~P~i~l~i~~-------------~~~~~~~~~L~~g~~Dl~i~~~~~-----~~-~~~~~l~~~~~~ 100 (238)
T 3onm_A 40 TLLPFLLNRVATLYPRLAIDVRV-------------KRSPFIADMLSSGEVDLAITTAKV-----DS-HPHVILRTSPTL 100 (238)
T ss_dssp THHHHHHHHHHHHCTTCCEEEEE-------------CCHHHHHHHHHHTSCSEEEECSCC------C-CCEEEEEEECEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEE-------------CCHHHHHHHHHCCCccEEEEecCC-----CC-cceEEeecCCEE
Confidence 34567888887765 77888773 357889999999999999864321 11 235688899999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 101 ~v~~~~~~ 108 (238)
T 3onm_A 101 WYCSVDYQ 108 (238)
T ss_dssp EEEETTCC
T ss_pred EEEcCCCC
Confidence 99998754
No 229
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=66.74 E-value=11 Score=37.35 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=48.4
Q ss_pred HHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhh-cceeecccceeeceEEE
Q psy16206 442 VDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERR-AAVDFTMPFMTLGISIL 519 (821)
Q Consensus 442 ~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~-~~~~fS~p~~~~~~~l~ 519 (821)
.+++..+.++. ++++++.. ++..+++..|.+|++|+++........+. ..+. ..|+.....+++
T Consensus 43 ~~~l~~f~~~~P~i~v~i~~-------------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v 108 (290)
T 1twy_A 43 DVLAEKYNQQHPETYVAVQG-------------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIV 108 (290)
T ss_dssp HHHHHHHHHHCTTCEEEEEE-------------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEE
T ss_pred HHHHHHHHhhCCCceEEEEe-------------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEE
Confidence 46777777776 78888873 25678899999999999976433222110 2232 357888999999
Q ss_pred EEcCCC
Q psy16206 520 YRKPAK 525 (821)
Q Consensus 520 ~~~~~~ 525 (821)
++++.+
T Consensus 109 ~~~~~p 114 (290)
T 1twy_A 109 VNQANP 114 (290)
T ss_dssp ECTTCC
T ss_pred ECCCCC
Confidence 887654
No 230
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=66.57 E-value=37 Score=33.95 Aligned_cols=41 Identities=7% Similarity=0.052 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 54 AKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 54 ~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
.+.+..|..+|+.+|+=++.+..+.++..+-+..++|+|..
T Consensus 74 ~~~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 74 VEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGV 114 (286)
T ss_dssp HHHHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEES
T ss_pred HHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEec
Confidence 44455555569999998888877666777777788998874
No 231
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=65.85 E-value=19 Score=33.35 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=48.7
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++.. ++...+..+|.+|++|+++..... ....+. +.++.....+
T Consensus 18 ~~l~~~l~~f~~~~P~i~i~l~~-------------~~~~~l~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~ 80 (209)
T 2ql3_A 18 TILPSMLYAFTAEYPRASVEFRE-------------DTQNRLRTQLEGGELDVAIVYDLD---LSPEWQ-TVPLMTREPM 80 (209)
T ss_dssp TTHHHHHHHHHHHCTTEEEEEEE-------------CCHHHHHHHHHTTSCSEEEEESSS---CCTTEE-EEEEEEECCE
T ss_pred hhHHHHHHHHHHHCCCceEEEEE-------------CcHHHHHHHHHcCCccEEEEecCC---CCCCce-EEEeecCceE
Confidence 34568888888776 67777763 256788999999999999753221 122232 3578888899
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 81 ~v~~~~hp 88 (209)
T 2ql3_A 81 VVLGAEHP 88 (209)
T ss_dssp EEEETTCG
T ss_pred EEEeCCCc
Confidence 99887643
No 232
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=64.76 E-value=1.3 Score=44.95 Aligned_cols=101 Identities=21% Similarity=0.285 Sum_probs=60.2
Q ss_pred CCccceecchHHHHHhhc---CceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhccccccc
Q psy16206 681 GELYGYSVDLIKMIANEL---NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAV 756 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 756 (821)
|+..|+..|+++.+.+++ |++++++.. .|..+...+.++..++.+. +.+ .+
T Consensus 75 g~~~G~~~dl~~~i~~~~~~~g~~v~~~~~-------------~~~~~~~~l~~G~~D~~~~~~~~---------~~--- 129 (291)
T 2yjp_A 75 GKNQGFDVEIAKDLAKDLLGSPDKVEFVLT-------------EAANRVEYVRSGKVDLILANFTQ---------TP--- 129 (291)
T ss_dssp SCEESHHHHHHHHHHHHHHSCGGGEEEEEC-------------CGGGHHHHHHTTSCSEECSSCBC---------CH---
T ss_pred CCEeehHHHHHHHHHHHhccCCceEEEEEc-------------cHHHHHHHHhCCCeeEEEeCCCC---------Ch---
Confidence 466799999999999999 999988753 2666777777776664321 110 01
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 757 STRLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 757 ~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
.|.-...| ...|..+-.. +.+++ ..+|+|++||. +.++|+..+++...++
T Consensus 130 -~r~~~~~~-------~~p~~~~~~~-l~~~~-~~~i~sl~dL~---gk~v~~~~g~~~~~~l 179 (291)
T 2yjp_A 130 -ERAEAVDF-------ADPYMKVALG-VVSPK-NKPITDMAQLK---DQTLLVNKGTTADAFF 179 (291)
T ss_dssp -HHHTTEEE-------CCCCEEECEE-EEEET-TSCCCSGGGGT---TSEEEEETTSHHHHHH
T ss_pred -HHHcccee-------ccCeeecceE-EEEeC-CCCCCCHHHhC---CCEEEEecCCcHHHHH
Confidence 01000000 0000000011 22344 34899999997 5789999988876654
No 233
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=64.20 E-value=10 Score=39.60 Aligned_cols=64 Identities=3% Similarity=-0.159 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhccee-ec-ccce
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVD-FT-MPFM 512 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~-fS-~p~~ 512 (821)
-.+.+.+.++.|-++++..++.+.. +++.++++++..|.+|+++.+......+...+. |+ .||.
T Consensus 53 ~~fa~~v~e~t~G~v~i~v~~~g~L-------g~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~ 118 (361)
T 2zzv_A 53 QKFTERVKELTDGQLEVQPFPAGAV-------VGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALG 118 (361)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSS-------SCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTS
T ss_pred HHHHHHHHHhcCCeEEEEEeCCCcc-------cCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCC
Confidence 3577888888988888888875433 367889999999999999877666666655544 33 5654
No 234
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=64.14 E-value=48 Score=32.83 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=30.9
Q ss_pred HHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 55 KLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 55 ~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
+.+..|..+|+.+|+=++.+..+.++..+-+...+|+|..
T Consensus 58 ~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvigi 97 (269)
T 3ist_A 58 EMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGV 97 (269)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEee
Confidence 3445566669999999988887767777888889999863
No 235
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=64.10 E-value=64 Score=31.91 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=33.2
Q ss_pred HHHHHHHHHhh-cCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 52 HTAKLMCNATS-EGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 52 ~a~~~a~~li~-~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
...+.+..|.+ +|+.+|+=++.+..+.++..+-+..++|+|..
T Consensus 53 ~~~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 53 YTWELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcc
Confidence 34556666778 79999998888877666777778888998874
No 236
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=61.23 E-value=37 Score=33.65 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccC-CCceeee
Q psy16206 54 AKLMCNATSEGIAAIFGPQSIENRNIIESMCQMF-DIPHVEA 94 (821)
Q Consensus 54 ~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~-~iP~is~ 94 (821)
.+.+..|.++|+.+|+-++.+..+.++..+-+.. ++|+|..
T Consensus 59 ~~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvigi 100 (268)
T 3out_A 59 AQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVIDV 100 (268)
T ss_dssp HHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEEH
T ss_pred HHHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEec
Confidence 3444556666999999998887776777777888 8999973
No 237
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=60.73 E-value=26 Score=33.86 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=25.2
Q ss_pred HHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 56 LMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 56 ~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
.+..|...|+.+|+-+..+.... +..+-+..++|++..
T Consensus 68 ~~~~L~~~g~~~iviaCNTa~~~-~~~l~~~~~iPvi~i 105 (231)
T 3ojc_A 68 AAISLKHAGAEVIVVCTNTMHKV-ADDIEAACGLPLLHI 105 (231)
T ss_dssp HHHHHHHHTCCEEEECSSGGGGG-HHHHHHHHCSCBCCH
T ss_pred HHHHHHhcCCCEEEEeCCchHHH-HHHHHHhCCCCEecc
Confidence 34445555999999887775443 355666678888854
No 238
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=60.54 E-value=7.7 Score=34.98 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=36.7
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCC
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTRM 789 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~ 789 (821)
...|.+..+|+++..|.++.+.+++..++.+++.++....
T Consensus 103 Di~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~ 142 (155)
T 2a9h_A 103 DLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQ 142 (155)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999987654
No 239
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=60.27 E-value=10 Score=37.00 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEE
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAI 492 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~ 492 (821)
+.++...++.|++++++.++ ++.....+|.+|++|+..
T Consensus 19 ~~~~~~~~~~Gl~ve~~~f~------------d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 19 EIAKEEVKKQHIELRIVEFT------------NYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHHHTTTEEEEEEECS------------CHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHHHcCCeEEEEEcC------------ChHHHHHHHHcCCCCEec
Confidence 33445666679999999876 789999999999999974
No 240
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=60.11 E-value=12 Score=36.51 Aligned_cols=66 Identities=6% Similarity=-0.039 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccc-c----chhhhcceeecccceeeceE
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLT-I----TSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~-~----t~~R~~~~~fS~p~~~~~~~ 517 (821)
+.++.++++-|++++++.+. +|.....+|.+|++|+...... + +.++...+..-.+.+..+..
T Consensus 20 ~~v~~~l~k~Gi~veiv~F~------------dy~~pN~AL~~G~iD~n~fQh~pyl~~~~k~~g~~Lv~v~~~~~~p~g 87 (246)
T 4ef1_A 20 EHVKPLLEKEGVKLEVTTYT------------DYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGAIHLEPVG 87 (246)
T ss_dssp HHHHHHHHHTTEEEEEEECS------------SSSHHHHHHHHTSCSEEEEEEHHHHHHHHHHHTCCEEEEEEEEECCCE
T ss_pred HHHHHHHHhcCCEEEEEEeC------------CchhHHHHHHCCCCCEEecCCHHHHHHHHHHCCCCEEEEeeccccceE
Confidence 44566667779999999876 6788888999999999753111 1 11222223333355556666
Q ss_pred EEE
Q psy16206 518 ILY 520 (821)
Q Consensus 518 l~~ 520 (821)
++.
T Consensus 88 lYS 90 (246)
T 4ef1_A 88 LYS 90 (246)
T ss_dssp EEC
T ss_pred Eec
Confidence 653
No 241
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=60.01 E-value=13 Score=37.46 Aligned_cols=74 Identities=9% Similarity=0.056 Sum_probs=50.7
Q ss_pred eeHHHHHHHHHHH---c---CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhh--hcceee-cc
Q psy16206 439 GYSVDLIKMIANE---L---NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSER--RAAVDF-TM 509 (821)
Q Consensus 439 G~~~dll~~ia~~---l---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R--~~~~~f-S~ 509 (821)
.+-.+++..+.++ . ++++++.. ++...++.+|.+|++|+++..-....+. .+.+.+ ..
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~v~l~~-------------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~ 99 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFKVAWYK-------------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPS 99 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CEEEEEE-------------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSC
T ss_pred HHHHHHHHHHHhhhcccCCCCeEEEEEe-------------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCccccee
Confidence 4557899999888 6 88888874 3568899999999999987532221111 112223 24
Q ss_pred -cceeeceEEEEEcCCC
Q psy16206 510 -PFMTLGISILYRKPAK 525 (821)
Q Consensus 510 -p~~~~~~~l~~~~~~~ 525 (821)
|+..+..+++++++.+
T Consensus 100 ~~l~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 100 YYAFRDHFMLIGPPSNP 116 (294)
T ss_dssp EEEEEEEEEEEECTTCT
T ss_pred eeEEeccEEEEecCCCh
Confidence 8888999999887654
No 242
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=59.44 E-value=9.8 Score=36.83 Aligned_cols=66 Identities=8% Similarity=0.035 Sum_probs=41.6
Q ss_pred HHHHHHH-HcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccc---cchhhhcceee--cccceeeceE
Q psy16206 444 LIKMIAN-ELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLT---ITSERRAAVDF--TMPFMTLGIS 517 (821)
Q Consensus 444 ll~~ia~-~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~---~t~~R~~~~~f--S~p~~~~~~~ 517 (821)
.++..++ +.|++++++.+. +|.....+|.+|++|+...... -....++..++ -.+....+..
T Consensus 23 ~~~~~l~~k~Gi~veiv~F~------------Dy~~pN~AL~~G~IDaN~fQh~pyL~~~nk~~g~~lv~v~~~~~~p~g 90 (237)
T 3k2d_A 23 VAAKVAKEKYGLDVELVTFT------------DYVTPNAALDDGSIDMNAFQHKPYLDRQVEDRDYKLTIAGNTFVYPIA 90 (237)
T ss_dssp HHHHHHHHHHCCCEEEEEES------------CTTSHHHHHHHTSCSEEEEEEHHHHHHHHHHHCCCEEEEEECCCCCCE
T ss_pred HHHHHHHHhcCCEEEEEEeC------------ChHhHHHHHHcCCCCeeccCCHHHHHHHHHHCCCCEEEEeeecccceE
Confidence 3444444 779999999987 6788999999999999754211 11112223333 3355556677
Q ss_pred EEEE
Q psy16206 518 ILYR 521 (821)
Q Consensus 518 l~~~ 521 (821)
++.+
T Consensus 91 lYS~ 94 (237)
T 3k2d_A 91 GYSK 94 (237)
T ss_dssp EECS
T ss_pred EecC
Confidence 7643
No 243
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=59.39 E-value=15 Score=36.37 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=43.3
Q ss_pred HHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccc-----cchhhhcceeecccceeeceEEE
Q psy16206 445 IKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLT-----ITSERRAAVDFTMPFMTLGISIL 519 (821)
Q Consensus 445 l~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~-----~t~~R~~~~~fS~p~~~~~~~l~ 519 (821)
++.+.++.|++++++.+. +|.....+|.+|++|+....-. ++.++...+..-.+....+..++
T Consensus 42 ~k~~l~k~Gi~veiv~F~------------Dy~~pN~AL~~G~IDaN~fQh~pyL~~~nk~~g~~Lv~v~~~~~~p~glY 109 (275)
T 3gxa_A 42 IQPELEKKGYTVKLVEFT------------DYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVPTAPLGLY 109 (275)
T ss_dssp HHHHHHTTTCEEEEEEES------------SSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEECCBCCCEEE
T ss_pred HHHHHHHcCCeEEEEEeC------------CcHhHHHHHHcCCCCeeecCCHHHHHHHHHHcCCCEEEEeeccccceEEe
Confidence 455677789999999886 6888999999999999753221 11122222333335556677776
Q ss_pred EEc
Q psy16206 520 YRK 522 (821)
Q Consensus 520 ~~~ 522 (821)
.++
T Consensus 110 S~k 112 (275)
T 3gxa_A 110 PGK 112 (275)
T ss_dssp ESS
T ss_pred cCC
Confidence 543
No 244
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=59.31 E-value=3.7 Score=39.66 Aligned_cols=43 Identities=21% Similarity=0.407 Sum_probs=36.4
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhcccee
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTF 736 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 736 (821)
|+..|+..|+++.+++++|++++++.. .|..+...+.++..+.
T Consensus 25 g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~D~ 67 (232)
T 3i6v_A 25 GEVDGFERELGDELCKRAGLTCEWVKN-------------DWDSIIPNLVSGNYDT 67 (232)
T ss_dssp SCEESHHHHHHHHHHHHHTCCEEEEEC-------------CGGGHHHHHHTTSCSE
T ss_pred CCEeeehHHHHHHHHHHcCCceEEEEC-------------CHHHHHHHHHCCCCCE
Confidence 567899999999999999999998763 3888888888887774
No 245
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=58.52 E-value=2 Score=43.35 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=60.0
Q ss_pred CCccceecchHHHHHhhc---CceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhccccccc
Q psy16206 681 GELYGYSVDLIKMIANEL---NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAV 756 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 756 (821)
|+..|+..|+++.+.+++ |++++++.. .|..+...+.++..+.++. +.++-- ......+
T Consensus 64 g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~-------------~~~~~~~~l~~G~~D~~~~~~~~~~~----r~~~~~~ 126 (292)
T 1xt8_A 64 GNNQGYDIALAKRIAKELFGDENKVQFVLV-------------EAANRVEFLKSNKVDIILANFTQTPQ----RAEQVDF 126 (292)
T ss_dssp SCEESHHHHHHHHHHHHHHSCTTCEEEEEC-------------CGGGHHHHHHTTSCSEECSSCBCCHH----HHTTEEE
T ss_pred CCEeeEhHHHHHHHHHHhccCCceEEEEEc-------------CHHHHHHHHhCCCeeEEeecCCCCcc----hhcceee
Confidence 456899999999999999 999988753 2666777777776664321 111000 0000000
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 757 STRLVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 757 ~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
+..+.... .. +.+++ ..+|++++||. +.++|+..+++...++
T Consensus 127 s~p~~~~~----------------~~-~~~~~-~~~i~~~~dL~---g~~i~~~~g~~~~~~l 168 (292)
T 1xt8_A 127 CSPYMKVA----------------LG-VAVPK-DSNITSVEDLK---DKTLLLNKGTTADAYF 168 (292)
T ss_dssp CCCCEEEE----------------EE-EEEET-TCCCCSSGGGT---TSEEEEETTSHHHHHH
T ss_pred eccceecc----------------eE-EEEEC-CCCCCCHHHhC---CCEEEEeCCCcHHHHH
Confidence 11111000 11 22233 34899999997 4789999988876655
No 246
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=58.38 E-value=4.7 Score=36.90 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=35.3
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTR 788 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~ 788 (821)
.+.|.+..+|+++..|+++++++++..++.+++.++...
T Consensus 86 Di~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 124 (166)
T 3pjs_K 86 DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQE 124 (166)
T ss_dssp SSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSH
T ss_pred CCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999998887443
No 247
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=57.53 E-value=11 Score=36.69 Aligned_cols=69 Identities=9% Similarity=0.031 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEecccc-c--hhhhc-ceeec--ccceeece
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTI-T--SERRA-AVDFT--MPFMTLGI 516 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~-t--~~R~~-~~~fS--~p~~~~~~ 516 (821)
+.++..+++-|++++++.+. +|...-.+|.+|++|+-..-... - ...+. ..+++ .+.+....
T Consensus 22 ~~vk~~l~k~Gi~leiv~F~------------Dy~~pN~AL~~G~iDaN~fQH~pyL~~~~k~~~g~~lv~v~~~~~~P~ 89 (249)
T 4got_A 22 KEAEPLLKEKGYTLKVKVLS------------DYKMYNKALADKEVDANYFQHIPYLEQEMKENTDYKLVNAGAVHLEPF 89 (249)
T ss_dssp HHHHHHHHTTTCEEEEECCS------------STHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTCCEEEEEEEEECCC
T ss_pred HHHHHHHHhcCCeEEEEEeC------------CccchhHHHHcCCcceeeccCHHHHHHHHHhCCCCceEEeeeeeeccc
Confidence 44555667779999999876 68888899999999997531111 1 11221 23333 35666677
Q ss_pred EEEEEcC
Q psy16206 517 SILYRKP 523 (821)
Q Consensus 517 ~l~~~~~ 523 (821)
.++.++-
T Consensus 90 glYS~k~ 96 (249)
T 4got_A 90 GIYSKTY 96 (249)
T ss_dssp EEECSSC
T ss_pred cccccCc
Confidence 7775543
No 248
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=57.47 E-value=8.5 Score=37.57 Aligned_cols=74 Identities=12% Similarity=-0.014 Sum_probs=52.2
Q ss_pred eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhh---cceeecccceeec
Q psy16206 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERR---AAVDFTMPFMTLG 515 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~---~~~~fS~p~~~~~ 515 (821)
|+--+++..+.++.|+++++... .-..++.++++|.+|+.+..-...++.. ....-..+|+...
T Consensus 19 ~ll~eL~~~Fek~~gv~V~~~~~-------------gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~ 85 (242)
T 3kn3_A 19 GLLDVLAPAYKKDTGVDLKWVAV-------------GTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYND 85 (242)
T ss_dssp THHHHHHHHHHHHHSCEEEEEEE-------------CHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSC
T ss_pred hHHHHHHHHHHHHhCCeEEEEEc-------------CcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcce
Confidence 55668888998888999988854 3457899999999999876433222221 1111235899999
Q ss_pred eEEEEEcCCC
Q psy16206 516 ISILYRKPAK 525 (821)
Q Consensus 516 ~~l~~~~~~~ 525 (821)
.++++|++++
T Consensus 86 LVLV~P~~~P 95 (242)
T 3kn3_A 86 FVIIGNPSFK 95 (242)
T ss_dssp EEEEECTHHH
T ss_pred EEEEEeCCCc
Confidence 9999987644
No 249
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=56.70 E-value=13 Score=36.06 Aligned_cols=66 Identities=8% Similarity=0.053 Sum_probs=41.3
Q ss_pred HHHHHHHH-HcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccc-cc--hhhhcceee--cccceeece
Q psy16206 443 DLIKMIAN-ELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLT-IT--SERRAAVDF--TMPFMTLGI 516 (821)
Q Consensus 443 dll~~ia~-~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~-~t--~~R~~~~~f--S~p~~~~~~ 516 (821)
+.++..++ +.|++++++.+. +|.....+|.+|++|+...... +- ...++.+++ -.+....+.
T Consensus 19 ~~~~~~l~~~~Gi~veiv~F~------------Dy~~pN~AL~~G~iDaN~fQh~pyl~~~~k~~g~~lv~v~~~~~~p~ 86 (240)
T 3tqw_A 19 EVAKQVALNRYGLHVNIITFS------------DYNTPNEALADGSVDANMFQHLPYLKAQIEMRGYKIVSIGKTFVYPM 86 (240)
T ss_dssp HHHHHHHHHHHCCCEEEEEES------------CTTSHHHHHHTTSCSEEEEEEHHHHHHHHHHHCCCEEEEEEEEECCC
T ss_pred HHHHHHHHHhcCCeEEEEEeC------------ChHhHHHHHHcCCcCeeccCCHHHHHHHHHHCCCCEEEEeeccccce
Confidence 34444444 679999999987 6788899999999999754221 11 112223333 335555666
Q ss_pred EEEE
Q psy16206 517 SILY 520 (821)
Q Consensus 517 ~l~~ 520 (821)
.++.
T Consensus 87 glYS 90 (240)
T 3tqw_A 87 GLYS 90 (240)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6654
No 250
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=56.26 E-value=8 Score=34.09 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=34.0
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTN 786 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~ 786 (821)
.+.|.+..+|+++..|.++++++++..++.+++.+..
T Consensus 59 d~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 59 DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp SSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred CCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999988754
No 251
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=55.23 E-value=20 Score=34.79 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=43.7
Q ss_pred HHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccc-----cchhhhcceeecccceeeceEEE
Q psy16206 445 IKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLT-----ITSERRAAVDFTMPFMTLGISIL 519 (821)
Q Consensus 445 l~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~-----~t~~R~~~~~fS~p~~~~~~~l~ 519 (821)
++.++++.|++++++.+. +|...-.+|.+|++|+-..... .+.+|...+..-.+.+..+..++
T Consensus 20 ~k~~l~k~Gi~leiv~F~------------Dy~~pN~AL~~G~iDaN~fQh~pyL~~~nk~~g~~Lv~v~~~~~~p~glY 87 (245)
T 3ir1_A 20 IQPELEKKGYTVKLVEFT------------DYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVPTAPLGLY 87 (245)
T ss_dssp HHHHHHTTTCEEEEEEES------------SSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEECCBCCCEEE
T ss_pred HHHHHHHcCceEEEEEeC------------CcHhHHHHHHCCCcCeeccCCHHHHHHHHHHcCCCEEEEeeecccceEEe
Confidence 345667789999999887 6788899999999999753221 11222223333345666777777
Q ss_pred EEc
Q psy16206 520 YRK 522 (821)
Q Consensus 520 ~~~ 522 (821)
.++
T Consensus 88 S~k 90 (245)
T 3ir1_A 88 PGK 90 (245)
T ss_dssp ESS
T ss_pred cCC
Confidence 554
No 252
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=53.96 E-value=18 Score=36.63 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhccee-ecccc
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVD-FTMPF 511 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~-fS~p~ 511 (821)
..+.+.+.++.|-++++..++.+..| +-.+++++++.|.+|++..+......+...+. |+.||
T Consensus 21 ~~fa~~v~e~s~G~i~i~~~~~g~Lg-------~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf 84 (301)
T 2pfy_A 21 RQFADEVKAATAGALEIKVQSNSTLL-------KRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPF 84 (301)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSSS-------CGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGGGSTT
T ss_pred HHHHHHHHHHcCCeEEEEEccchhhC-------ChHHHHHHHHCCCeeeehhhhhhhhccCcccccccCCc
Confidence 36778888889999999999866544 34679999999999999766555444443332 34454
No 253
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=53.53 E-value=5.5 Score=32.64 Aligned_cols=40 Identities=10% Similarity=0.212 Sum_probs=36.4
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCC
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTRM 789 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~ 789 (821)
...|.+..+|+++..|.++.+.+.+...+++++.++.++.
T Consensus 51 di~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 51 DFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4789999999999999999999999999999998876654
No 254
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=53.40 E-value=21 Score=34.63 Aligned_cols=63 Identities=8% Similarity=0.026 Sum_probs=41.6
Q ss_pred HHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccc-----cchhhhcceeecccceeeceEEEEEc
Q psy16206 448 IANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLT-----ITSERRAAVDFTMPFMTLGISILYRK 522 (821)
Q Consensus 448 ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~-----~t~~R~~~~~fS~p~~~~~~~l~~~~ 522 (821)
++++.|++++++.+. +|.....+|.+|++|+-..... .+.++...+..-.+....+..++.++
T Consensus 29 l~k~~Gi~veiv~F~------------Dy~~pN~AL~~G~IDaN~fQH~pyL~~~nk~~g~~lv~v~~~~~~p~giYS~k 96 (245)
T 3up9_A 29 LAADAGIKLDIVEYT------------DYVQPNTALNDGDLDANFYQTVPYLENAEKQFGYNFEAGEGIHLEPLGVFSNK 96 (245)
T ss_dssp THHHHTEEEEEEECS------------SSHHHHHHHHTTSCSEEEEEEHHHHHHHHHHHCCCEEECCCCEECCCEEECSS
T ss_pred HHHHcCCeEEEEEec------------CcccHHHHHHcCCCceeccCCHHHHHHHHHHCCCCEEEEeeecccceEEEeCC
Confidence 344569999999886 6888999999999999754111 11223223333446666777777543
No 255
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=53.20 E-value=60 Score=32.11 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCeEEEEE-ecCCcccccCCCCCcchHHHHHHHcCCcceEEe-------ccccc-------h----h--h
Q psy16206 443 DLIKMIANELNFTYKFVL-ERENTYGTLNPQTGKWNGLIGELQEQRADLAIC-------DLTIT-------S----E--R 501 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~-------~~~~t-------~----~--R 501 (821)
.++..+.+..|++++++. + ++...++.+|.+|++|+.+. ..... + + +
T Consensus 23 ~~~~~~le~~G~~Ve~~~~~------------g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~ 90 (275)
T 1sw5_A 23 NMIAILLEENGYKAEVKEGL------------GGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVK 90 (275)
T ss_dssp HHHHHHHHHTTCCEEECTTC------------CSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEeCC------------CchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHH
Confidence 455656667799999874 2 25678999999999999863 01111 0 0 1
Q ss_pred h-----cceeecccc-eeeceEEEEEcCC
Q psy16206 502 R-----AAVDFTMPF-MTLGISILYRKPA 524 (821)
Q Consensus 502 ~-----~~~~fS~p~-~~~~~~l~~~~~~ 524 (821)
. ..+.+-.|+ .....++++++..
T Consensus 91 ~~~~~~~~l~~l~~~~~~~~~~l~V~~~~ 119 (275)
T 1sw5_A 91 KGLLEADGVVVAAKLGFRDDYALAVRADW 119 (275)
T ss_dssp HHHHHHHCCEEEEEEEEECCEEEEEEHHH
T ss_pred HHhhhcCCeEEeccCCCCCeeEEEEeHHH
Confidence 1 145555565 4567899999865
No 256
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=51.81 E-value=49 Score=32.81 Aligned_cols=39 Identities=5% Similarity=-0.038 Sum_probs=29.5
Q ss_pred HHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 56 LMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 56 ~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
.+..|..+|+.+|+=++.+..+.++..+-+..++|+|..
T Consensus 78 ~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvigi 116 (274)
T 3uhf_A 78 ALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGV 116 (274)
T ss_dssp HHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEECS
T ss_pred HHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEcC
Confidence 333444459999999988877776777778889999864
No 257
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=51.71 E-value=6.4 Score=39.43 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=60.6
Q ss_pred CCccceecchHHHHHhhcCceEEEEEccCCcccccCCCCCcchhhHHHHhhccceeeee-hhhhhhhhhhcccccccccc
Q psy16206 681 GELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQVDTFILF-FIYSILFFIYTFVNEAVSTR 759 (821)
Q Consensus 681 g~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r 759 (821)
|+..|+..|+++.+.+++|++++++.. .|..+...+.++..+..+. +.+ ..+ .|
T Consensus 77 g~~~G~~~dl~~~i~~~~G~~v~~~~~-------------~~~~~~~~l~~G~~D~~~~~~~~--------~t~----~r 131 (283)
T 2yln_A 77 GKLTGYDVEVTRAVAEKLGVKVEFKET-------------QWDSMMAGLKAGRFDVVANQVGL--------TSP----ER 131 (283)
T ss_dssp SCEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHHHHHTSCSEECSSCCC--------CSH----HH
T ss_pred CCEeeehHHHHHHHHHHcCCceEEEEC-------------CHHHHHHHHHCCCcCEEEecCcc--------CCh----hh
Confidence 456799999999999999999988752 2777888888876664321 110 001 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCChhhhhhcCceeEEEEecCcccccc
Q psy16206 760 LVAGMWWFFTLIMISSYTANLAAFLTNTRMNPPIKNVEDLAKAGRIKYGCVEMGSTRNFF 819 (821)
Q Consensus 760 ~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~~~i~s~~dL~~~~~~~~~~~~~~~~~~~~ 819 (821)
--...| + ...|... ..+-+++ ..+|++++||. +.++|+..+++...++
T Consensus 132 ~~~~~~---~---~p~~~~~--~~l~~~~-~~~i~s~~dL~---G~~v~v~~g~~~~~~l 179 (283)
T 2yln_A 132 QATFDK---S---EPYSWSG--AVLVAHN-DSNIKSIADIK---GVKTAQSLTSNYGEKA 179 (283)
T ss_dssp HHHEEE---C---SCSEEEC--EEEEEET-TCSCCSGGGCT---TSEEEECTTSHHHHHH
T ss_pred hcceEe---c---cCeeeec--EEEEEEC-CCCCCCHHHhC---CCEEEEecCchHHHHH
Confidence 100000 0 0000000 0122233 45699999996 5799999888876654
No 258
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=51.27 E-value=32 Score=34.25 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=48.0
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccce-eece
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFM-TLGI 516 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~-~~~~ 516 (821)
.+-.+++..+.++. ++++++... +...++..|.+|++|+++..... ....+. ..|+. ....
T Consensus 108 ~~l~~~l~~f~~~~P~i~i~l~~~-------------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~ 170 (306)
T 3fzv_A 108 LYLPGLIAGFRQAYPGVEIRIRDG-------------EQQELVQGLTSGRFDLAFLYEHD---LDSTIE-TEPLMPPQRP 170 (306)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEE-------------CHHHHHHHHHHTSCSEEEECSSS---CCTTEE-EEESSCCBCC
T ss_pred HHHHHHHHHHHHHCCCeEEEEEeC-------------CHHHHHHHHHCCCccEEEEeccc---cccccc-eeeeeecccc
Confidence 44567888887776 677777643 56788999999999999763221 122222 34666 7777
Q ss_pred EEEEEcCCC
Q psy16206 517 SILYRKPAK 525 (821)
Q Consensus 517 ~l~~~~~~~ 525 (821)
+++++++.+
T Consensus 171 ~~v~~~~~p 179 (306)
T 3fzv_A 171 HALLPEGHR 179 (306)
T ss_dssp EEEEETTCT
T ss_pred EEEecCCCc
Confidence 888887654
No 259
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=50.22 E-value=18 Score=36.56 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEE
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAI 492 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~ 492 (821)
..++...++.|++++++.++ ++..+..+|.+|++|+..
T Consensus 54 ~~~~~~~~~~G~~Ve~~~f~------------~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 54 EKVKELAKKDDIDVEIKHFS------------DYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHHHHGGGTCCEEEEECS------------STTSHHHHHHTTSSSEEE
T ss_pred HHHHHHHHHcCCeEEEEEeC------------ChHHHHHHHHcCCCCEEc
Confidence 33445666679999999876 577899999999999985
No 260
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=49.95 E-value=19 Score=36.51 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhh
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERR 502 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~ 502 (821)
..+.+.+.++.|-++++..++.+..| +-.+++++++.|.+|++..+......+.
T Consensus 20 ~~fa~~v~~~s~G~i~i~~~~~g~Lg-------~~~~~~~~v~~G~id~~~~~~~~~~~~~ 73 (301)
T 2pfz_A 20 TQFVKDVDSLSGGKLKITLHNNASLY-------KAPEIKRAVQGNQAQIGEILLTNFANED 73 (301)
T ss_dssp HHHHHHHHHHHTTSCEEEEECTTSSS-------CGGGHHHHHHTTSSSEEEEEGGGGTTTC
T ss_pred HHHHHHHHHHcCCeEEEEEccCcccC-------ChHHHHHHHHCCceeeEechhhhccccC
Confidence 35778888888888999888865544 4577999999999999977655444443
No 261
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=49.80 E-value=26 Score=35.38 Aligned_cols=69 Identities=9% Similarity=0.035 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccc----hhh---hcceeeccc-ceee
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT----SER---RAAVDFTMP-FMTL 514 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t----~~R---~~~~~fS~p-~~~~ 514 (821)
.++..+.+..|++++++.. +-..+..+|.+|++|+.......+ ..+ ...+..-.| +...
T Consensus 24 ~i~~~~Le~~G~~Ve~~~~-------------~~~~~~~Al~~G~iD~~~~~w~~~~~~~~~~~~~~~~l~~l~~~~~~~ 90 (298)
T 2rin_A 24 ATATTILEALGYETDVKVL-------------SVPVTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVETVRENLAGA 90 (298)
T ss_dssp HHHHHHHHHHTCEEEEECC-------------CHHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHTTTSEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCceEEEEC-------------CcHHHHHHHHcCCcEEEhhhccCchHHHHHHHhhCCCEEEeccCCCCC
Confidence 4445555668999999842 345688999999999986432222 111 123333334 3456
Q ss_pred ceEEEEEcCC
Q psy16206 515 GISILYRKPA 524 (821)
Q Consensus 515 ~~~l~~~~~~ 524 (821)
...+++++..
T Consensus 91 ~~~l~V~~~~ 100 (298)
T 2rin_A 91 KYTLATNAKG 100 (298)
T ss_dssp EEEEEEEHHH
T ss_pred eEEEEEchhH
Confidence 7889998854
No 262
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=49.25 E-value=36 Score=33.59 Aligned_cols=71 Identities=10% Similarity=0.023 Sum_probs=48.3
Q ss_pred HHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccch-hhhccee-ecccceeeceEE
Q psy16206 442 VDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITS-ERRAAVD-FTMPFMTLGISI 518 (821)
Q Consensus 442 ~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~-~R~~~~~-fS~p~~~~~~~l 518 (821)
..++..+.++. +.++++... .-...+.+|.+|++|+++....... +..+.-+ ...|+..+++++
T Consensus 19 ~~~~~~F~~~~P~v~i~v~~~-------------gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~~~~ia~d~lvv 85 (265)
T 4exl_A 19 EVAADEFGTIHVGKTVNVQGG-------------GSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALVDHKVAVAGLAL 85 (265)
T ss_dssp HHHHHHHHHHSTTCEEEEEEE-------------CHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEECCEEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEeeC-------------CcHHHHHHHHcCCCccccccCCcchhhcccccCceEeeEEEEEEEE
Confidence 46677777776 788887743 4567899999999999876543332 1111112 246899999999
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++.+.+
T Consensus 86 vv~~~~~ 92 (265)
T 4exl_A 86 IVNKEVD 92 (265)
T ss_dssp EECTTCC
T ss_pred EECCCCc
Confidence 9987654
No 263
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=48.54 E-value=33 Score=33.84 Aligned_cols=71 Identities=11% Similarity=0.044 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhh---hcceeecccceeece
Q psy16206 441 SVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSER---RAAVDFTMPFMTLGI 516 (821)
Q Consensus 441 ~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R---~~~~~fS~p~~~~~~ 516 (821)
-.+++..+.++. +.++++... +-...+.+|.+|++|+++.....+++. ...+ ...|+..+..
T Consensus 18 l~~~~~~f~~~~P~v~i~v~~~-------------~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~l 83 (264)
T 4ecf_A 18 VEAAGEQYTGEHLGTFINVQGG-------------GTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGI 83 (264)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEE-------------CHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEE
T ss_pred HHHHHHHHHHHCCCceEEEEeC-------------CCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEE
Confidence 356777887766 777777643 457789999999999997654443320 1122 2568999999
Q ss_pred EEEEEcCCC
Q psy16206 517 SILYRKPAK 525 (821)
Q Consensus 517 ~l~~~~~~~ 525 (821)
+++++.+.+
T Consensus 84 vvvv~~~~p 92 (264)
T 4ecf_A 84 TPIVNKKVG 92 (264)
T ss_dssp EEEECTTSS
T ss_pred EEEEcCCCc
Confidence 999987654
No 264
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=48.42 E-value=15 Score=31.07 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=34.2
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTR 788 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~ 788 (821)
...|.+..+|+++..|.++++.+++...+++++.++..+
T Consensus 68 di~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 106 (114)
T 2q67_A 68 NFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106 (114)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999886554
No 265
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=48.31 E-value=40 Score=31.73 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=49.0
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++.. ++...++++|.+|++|+++..... .....+. +.|+.....+
T Consensus 27 ~~l~~~l~~f~~~~P~v~l~l~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~--~~~~~l~-~~~l~~~~~~ 90 (228)
T 2fyi_A 27 YSLPEVIKAFRELFPEVRLELIQ-------------GTPQEIATLLQNGEADIGIASERL--SNDPQLV-AFPWFRWHHS 90 (228)
T ss_dssp HTHHHHHHHHHHHCTTEEEEEEE-------------CCHHHHHHHHHHTSCSEEEESSSS--TTCTTEE-EEEEEEECEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEe-------------CCHHHHHHHHHcCCccEEEEeccc--CCCCCce-EEEeeecceE
Confidence 44568888888776 66777763 356789999999999999763211 1122233 3578888999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 91 ~v~~~~hp 98 (228)
T 2fyi_A 91 LLVPHDHP 98 (228)
T ss_dssp EEEETTCG
T ss_pred EEecCCCC
Confidence 99987654
No 266
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=47.30 E-value=30 Score=35.30 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhccee-ecccceeeceEEEE
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVD-FTMPFMTLGISILY 520 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~-fS~p~~~~~~~l~~ 520 (821)
-++++.+.+.-+.++++.. +.-...+.++.+|++|+++..-..+++...... ...|+..+..++++
T Consensus 17 ~~~~~~f~~~p~v~i~v~~-------------~gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~d~lvvvv 83 (321)
T 1ixh_A 17 AKWADTYQKETGNKVNYQG-------------IGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAV 83 (321)
T ss_dssp HHHHHHHHHHHCCEEEEEE-------------CCHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCceEEEec-------------CCCHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeeeeeEEEEE
Confidence 4566666665577887763 245678999999999999877666654321111 24689999999999
Q ss_pred EcCCC
Q psy16206 521 RKPAK 525 (821)
Q Consensus 521 ~~~~~ 525 (821)
+.+..
T Consensus 84 ~~~~~ 88 (321)
T 1ixh_A 84 NIPGL 88 (321)
T ss_dssp CCTTC
T ss_pred eCCCC
Confidence 87643
No 267
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=47.30 E-value=40 Score=33.25 Aligned_cols=70 Identities=6% Similarity=0.036 Sum_probs=48.5
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++.. ++...++..|.+|++|+++..... ....+. +.|+.....+
T Consensus 104 ~~l~~~l~~f~~~~P~i~l~~~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~ 166 (294)
T 1ixc_A 104 RSLPLLLRAFLTSTPTATVSLTH-------------MTKDEQVEGLLAGTIHVGFSRFFP---RHPGIE-IVNIAQEDLY 166 (294)
T ss_dssp THHHHHHHHHHHHCTTEEEEEEE-------------CCHHHHHHHHHHTSCSEEEESCCC---CCTTEE-EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEe-------------CCHHHHHHHHHCCCccEEEEecCC---CCCCce-EEEEeeccEE
Confidence 34567888887775 66777763 245678999999999999764322 122232 4578889999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 167 ~v~~~~~p 174 (294)
T 1ixc_A 167 LAVHRSQS 174 (294)
T ss_dssp EEEEGGGG
T ss_pred EEEeCCCc
Confidence 99987643
No 268
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=46.24 E-value=30 Score=33.38 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCC-cceEEeccccchhh---hccee--ecccceeec
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQR-ADLAICDLTITSER---RAAVD--FTMPFMTLG 515 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~R---~~~~~--fS~p~~~~~ 515 (821)
-++++.+.++.|.++++..- +-..++..+++|. +|+.++.-....++ +..+. ...+|....
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~~-------------~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~ 88 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSFA-------------SSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNS 88 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEEE-------------CHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEEC
T ss_pred HHHHHHHHhccCCeEEEEEC-------------CHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcce
Confidence 47888888888999988642 3456888888887 99997632221221 22232 224788899
Q ss_pred eEEEEEcCCC
Q psy16206 516 ISILYRKPAK 525 (821)
Q Consensus 516 ~~l~~~~~~~ 525 (821)
.+++++++.+
T Consensus 89 lvl~~~~~~~ 98 (237)
T 3r26_A 89 LVVVAPKASV 98 (237)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEeCCCC
Confidence 9999998753
No 269
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=45.03 E-value=75 Score=31.03 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=28.9
Q ss_pred HHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 56 LMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 56 ~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
.+..|.++|+.+|+-++.+..+.++..+-+..++|+|..
T Consensus 54 ~~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvigi 92 (255)
T 2jfz_A 54 ALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGV 92 (255)
T ss_dssp HHHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEECS
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee
Confidence 344455559999998888776556667777789999973
No 270
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=44.90 E-value=67 Score=31.38 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 53 TAKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 53 a~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
..+.+..|..+|+.+|+-++.+..+.++..+-+..++|++..
T Consensus 51 ~~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi 92 (254)
T 1b73_A 51 SLECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGV 92 (254)
T ss_dssp HHHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEES
T ss_pred HHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee
Confidence 344555566669999998887776444556666678888863
No 271
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=43.64 E-value=55 Score=32.06 Aligned_cols=29 Identities=14% Similarity=-0.068 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEec
Q psy16206 453 NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICD 494 (821)
Q Consensus 453 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~ 494 (821)
|+++++ ... +++.+..++.+|++|++..+
T Consensus 29 g~~v~~-~~~------------~~~~~~~al~~G~~D~~~~~ 57 (272)
T 2czl_A 29 PVPLEP-VLE------------DVETLNRWALEGRLPLTKLS 57 (272)
T ss_dssp SSCEEE-EEC------------CHHHHHHHHHTTCCSEEEEE
T ss_pred CceeEE-ecC------------CHHHHHHHHHcCCCCEEEec
Confidence 677887 332 67889999999999998654
No 272
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=42.99 E-value=31 Score=33.79 Aligned_cols=71 Identities=7% Similarity=0.002 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCC-cceEEeccccchhh---hccee--ecccceeec
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQR-ADLAICDLTITSER---RAAVD--FTMPFMTLG 515 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~R---~~~~~--fS~p~~~~~ 515 (821)
-++++.+.++.|+++++..- +-..++..+++|. +|+.++.-....++ +..+. -..+|....
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~~-------------~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~ 104 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSYA-------------ASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNT 104 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEEE-------------CHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEEC
T ss_pred HHHHHHHHHHhCCeEEEEEC-------------ChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeE
Confidence 47888888888999988642 3456888888887 99997633222222 22232 124788889
Q ss_pred eEEEEEcCCC
Q psy16206 516 ISILYRKPAK 525 (821)
Q Consensus 516 ~~l~~~~~~~ 525 (821)
.+++++++++
T Consensus 105 lvl~~~~~~~ 114 (253)
T 3gzg_A 105 LVLVAPASSK 114 (253)
T ss_dssp EEEEEETTCC
T ss_pred EEEEEECCCC
Confidence 9999998764
No 273
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=42.71 E-value=51 Score=31.08 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=49.2
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-..++..+.++. ++++++... +...++++|.+|++|+++..... ....+. +.|+.....+
T Consensus 43 ~~l~~~l~~f~~~~P~v~l~~~~~-------------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~ 105 (238)
T 2hxr_A 43 YFIGPLMADFYARYPSITLQLQEM-------------SQEKIEDMLCRDELDVGIAFAPV---HSPELE-AIPLLTESLA 105 (238)
T ss_dssp TTHHHHHHHHHHHCTTSCEEEEEC-------------CHHHHHHHHHTTSCSEEEEESSC---CCTTEE-EEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEC-------------CHHHHHHHHHcCCCcEEEEcCCC---Ccccce-eeeeccCcEE
Confidence 34567888888776 677887732 46778899999999999763221 122233 3578889999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 106 ~v~~~~hp 113 (238)
T 2hxr_A 106 LVVAQHHP 113 (238)
T ss_dssp EEEETTSG
T ss_pred EEEcCCCc
Confidence 99987653
No 274
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=42.58 E-value=18 Score=28.33 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=32.0
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhh
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFL 784 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~l 784 (821)
...|.+..+|++...|.++.+.+.+...+++++.+
T Consensus 47 di~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 47 DYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999998875
No 275
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=41.56 E-value=65 Score=31.82 Aligned_cols=70 Identities=10% Similarity=0.065 Sum_probs=47.3
Q ss_pred HHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEEEEE
Q psy16206 443 DLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYR 521 (821)
Q Consensus 443 dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l~~~ 521 (821)
++.+++.++. |.++++... .-...+.++.+|.+|++.++-.++++..+.-.-..|+..+..+++++
T Consensus 53 ~~a~~f~~~~p~v~v~~~~~-------------GSg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn 119 (279)
T 4gd5_A 53 AEAEAFKTKKPDVSIEINQI-------------GSSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITH 119 (279)
T ss_dssp HHHHHHHHHSTTCEEEEEEC-------------CHHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEeeC-------------CcHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeec
Confidence 4444454443 778877642 23567889999999999876666654333322345888999999999
Q ss_pred cCCC
Q psy16206 522 KPAK 525 (821)
Q Consensus 522 ~~~~ 525 (821)
++.+
T Consensus 120 ~~n~ 123 (279)
T 4gd5_A 120 KNNP 123 (279)
T ss_dssp TTCS
T ss_pred cCCc
Confidence 7765
No 276
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=40.72 E-value=27 Score=36.38 Aligned_cols=57 Identities=7% Similarity=-0.064 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhccee
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVD 506 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~ 506 (821)
.+.+.+.++.|-++++..++.+..| +..++++++..|.+|++..+......+...+.
T Consensus 53 ~fa~~v~e~s~G~v~i~~~~~g~Lg-------~~~~~~eav~~G~iD~~~~~~~~~~~~~p~~~ 109 (365)
T 2hzl_A 53 VLSKMLSEATDGNFQIQVFSAGELV-------PGLQAADAVTEGTVECCHTVGYYYWGKDPTFA 109 (365)
T ss_dssp HHHHHHHHHTTTSSEEEEECTTTSS-------CGGGHHHHHHTTSSSEEEECGGGGTTTCTHHH
T ss_pred HHHHHHHHhcCCeEEEEEecCCccc-------CHHHHHHHHHcCccceeecchhhhcccChhHh
Confidence 5778888888878888888755433 56789999999999999776555444443333
No 277
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=39.63 E-value=59 Score=32.11 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 54 AKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 54 ~~~a~~li~~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
.+.+..|...|+.+|+=+..+... ++..+-+..++|+|..
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEcc
Confidence 445555666699999998887655 5566777789999975
No 278
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=39.50 E-value=52 Score=32.78 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=48.3
Q ss_pred HHHHHHHHHH-cCCeEEEEEecCCcccccCCCCCcchHHHHHHHc-CC-cceEEeccccchhh---hcceeecccceeec
Q psy16206 442 VDLIKMIANE-LNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE-QR-ADLAICDLTITSER---RAAVDFTMPFMTLG 515 (821)
Q Consensus 442 ~dll~~ia~~-l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~-g~-~Di~~~~~~~t~~R---~~~~~fS~p~~~~~ 515 (821)
-++++.+.++ .|+++++..- +-..++..+.+ |. +|+.++.-....++ ...++...||....
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~~-------------~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~ 86 (292)
T 3cfz_A 20 EEYEKMFEKEHPNVDVEREPA-------------GSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNE 86 (292)
T ss_dssp HHHHHHHHHHCTTEEEEEEEE-------------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECC
T ss_pred HHHHHHHHHHCCCceEEEEeC-------------CHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEecc
Confidence 4788888777 5999888643 44668888888 75 99987632221222 22344566888899
Q ss_pred eEEEEEcCCC
Q psy16206 516 ISILYRKPAK 525 (821)
Q Consensus 516 ~~l~~~~~~~ 525 (821)
.+++++++..
T Consensus 87 lvi~~~~~~~ 96 (292)
T 3cfz_A 87 IVLAYTDKSK 96 (292)
T ss_dssp EEEEECTTST
T ss_pred EEEEEcCCCc
Confidence 9999987643
No 279
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=39.29 E-value=83 Score=31.21 Aligned_cols=70 Identities=6% Similarity=-0.002 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccc-------hhhhcceeeccc-cee
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT-------SERRAAVDFTMP-FMT 513 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t-------~~R~~~~~fS~p-~~~ 513 (821)
..++..+-+.+|++++++.. +-.-+..+|.+|++|+........ ..+. .+..-.| +..
T Consensus 32 ~~i~~~~Le~~G~~Ve~~~~-------------~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~~-~l~~l~~~~~~ 97 (280)
T 3tmg_A 32 TNVLKVVFEKMGYNAEIFSV-------------TTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKT-KFVDLGANYEG 97 (280)
T ss_dssp HHHHHHHHHHTTEEEEEEEC-------------CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGG-GEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEC-------------CcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhcC-cEEEccccCCC
Confidence 45666666779999998753 235688999999999976522211 1112 3333444 334
Q ss_pred eceEEEEEcCCC
Q psy16206 514 LGISILYRKPAK 525 (821)
Q Consensus 514 ~~~~l~~~~~~~ 525 (821)
...++++++...
T Consensus 98 ~~~~l~V~~~~~ 109 (280)
T 3tmg_A 98 TIQGFVVPSYVP 109 (280)
T ss_dssp EEEEEEEETTSC
T ss_pred ceEEEEECCCCC
Confidence 568899998764
No 280
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=38.72 E-value=72 Score=31.92 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=48.1
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-..++..+.++. ++++++. .++...++..|.+|++|+++..... ....+. +.|+.....+
T Consensus 118 ~~l~~~l~~f~~~~P~v~l~l~-------------~~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~ 180 (315)
T 1uth_A 118 YFMPPLMEALAQRAPHIQISTL-------------RPNAGNLKEDMESGAVDLALGLLPE---LQTGFF-QRRLFRHRYV 180 (315)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEE-------------CTTSSCHHHHHHHTSCCEEEECCTT---CCTTEE-EEEEEEECEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEE-------------eCCcccHHHHHHCCCCCEEEecCCC---CCCCce-EEEeeccceE
Confidence 34467777777765 6778776 3355678999999999999763321 122232 4578888899
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 181 ~v~~~~hp 188 (315)
T 1uth_A 181 CMFRKDHP 188 (315)
T ss_dssp EEEETTCS
T ss_pred EEEeCCCC
Confidence 99887654
No 281
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=38.62 E-value=80 Score=30.85 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=50.0
Q ss_pred eHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccc---hhh---hcceeecccc-e
Q psy16206 440 YSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTIT---SER---RAAVDFTMPF-M 512 (821)
Q Consensus 440 ~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t---~~R---~~~~~fS~p~-~ 512 (821)
+..++++.+.+.+|++++++.. +-.-+..+|.+|++|+.......+ +.. ...+..-.|. .
T Consensus 16 i~~~i~~~~Le~~G~~Ve~~~~-------------~~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~ 82 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVKTTAL-------------DNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPNLK 82 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEC-------------CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEC-------------ChHHHHHHHHCCCCeEEEcccCCcccHHHHHHhCCceEEccccCC
Confidence 3457777777788999998743 345688999999999975432211 100 1223434444 3
Q ss_pred eeceEEEEEcCCCCCCCcccc
Q psy16206 513 TLGISILYRKPAKKQPDLFSF 533 (821)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~~~~ 533 (821)
....++++|+... ..++.++
T Consensus 83 ~~~~~l~Vp~~~~-i~si~DL 102 (256)
T 3l6g_A 83 GAKVGFVVPSYMN-VNSIEDL 102 (256)
T ss_dssp EEEEEEEEETTSC-CCBGGGC
T ss_pred CceEEEEECCccC-CCCHHHH
Confidence 4679999998763 3344333
No 282
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=38.55 E-value=1.3e+02 Score=30.70 Aligned_cols=91 Identities=8% Similarity=0.086 Sum_probs=68.5
Q ss_pred EEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhh
Q psy16206 111 VNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIK 190 (821)
Q Consensus 111 ~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk 190 (821)
-+..|+....++.+.++++..+.++|.|..|.+.....+++++.... +.+.+++++ .+++...-
T Consensus 258 emClPSle~I~rqIk~~vk~~~lksVFIATDa~~~~~ELk~~L~~~~------------v~vv~~~pe----~a~ID~~I 321 (362)
T 3zy2_A 258 EICSPSKQQILEQIVEKVGSIGAKSVFVASDKDHMIDEINEALKPYE------------IEAHRQEPD----DMYTSLAI 321 (362)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCCCHHHHHHHHGGGT------------CCEECCSSC----CHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHHhhccC------------ceEEEeCCc----hhHHHHHH
Confidence 34578888889999999999999999999987777888888776543 233445442 45666666
Q ss_pred cCCCcEEEEeCChhHHHHHHHHHHHcc
Q psy16206 191 NSSESHILLDCSMDKTVTILKQAKEVH 217 (821)
Q Consensus 191 ~~~~~~ivl~~~~~~~~~~l~~a~~~g 217 (821)
-+.++.+|-.|...-...+.++=.-+|
T Consensus 322 ~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 322 MGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HHhCCEeecCccccccHHHHHHHHhcC
Confidence 678999999998888877777665666
No 283
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=38.22 E-value=1.3e+02 Score=29.88 Aligned_cols=112 Identities=11% Similarity=0.016 Sum_probs=60.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCc---chHH
Q psy16206 2 KIVGIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSI---ENRN 78 (821)
Q Consensus 2 ~IG~i~~~~~~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s---~~~~ 78 (821)
+||++...+........+..-+..-+. | ++++..... +.... ..+.+.+..++++++.+... ....
T Consensus 142 ~vgvi~~~~~~~s~~~~~~~~~~~~~~------g--~~~v~~~~~--~~~~~-~~~~~~l~~~~d~i~~~~d~~~~~~~~ 210 (302)
T 3lkv_A 142 SIGVVYNPGEANAVSLMELLKLSAAKH------G--IKLVEATAL--KSADV-QSATQAIAEKSDVIYALIDNTVASAIE 210 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHT------T--CEEEEEECS--SGGGH-HHHHHHHHTTCSEEEECSCHHHHHTHH
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHc------C--CEEEEEecC--ChHHH-HHHHHhccCCeeEEEEeCCcchhhHHH
Confidence 588888876533232233322222222 2 233333322 22222 23334445578888888766 3445
Q ss_pred HHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 79 IIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 79 ~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
++..++...++|+++.... .. ...-+.-...+...+++..++++.+
T Consensus 211 ~i~~~~~~~~iPv~~~~~~-~v-----~~G~l~~~~~~~~~~G~~aa~~a~~ 256 (302)
T 3lkv_A 211 GMIVAANQAKTPVFGAATS-YV-----ERGAIASLGFDYYQIGVQTADYVAA 256 (302)
T ss_dssp HHHHHHHHTTCCEEESSHH-HH-----HTTCSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCceeecccc-cc-----cCCceEEEecCHHHHHHHHHHHHHH
Confidence 5566788899999986321 11 1123455666777787777776644
No 284
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=38.11 E-value=35 Score=35.91 Aligned_cols=73 Identities=3% Similarity=-0.003 Sum_probs=45.5
Q ss_pred HHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHHHHHhhcCCCcEEEEe
Q psy16206 123 GISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPLLKEIKNSSESHILLD 200 (821)
Q Consensus 123 al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~l~~lk~~~~~~ivl~ 200 (821)
.+.++++.+| +|+.||++..-.....+++.+.+. . |+.+.+..++++ .++....++.+++.++|.||-.
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~~~~~~v~~~L~-------~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIav 113 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFDALSERIGKSCG-------D-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGV 113 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHHHHHHHC--------------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcC-CEEEEEECchHHHHHHHHHHHHHH-------c-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEe
Confidence 4566778888 999999887654333444444444 4 566644445443 3456667777888899999888
Q ss_pred CChh
Q psy16206 201 CSMD 204 (821)
Q Consensus 201 ~~~~ 204 (821)
+.+.
T Consensus 114 GGGs 117 (387)
T 3uhj_A 114 GGGK 117 (387)
T ss_dssp SSHH
T ss_pred CCcH
Confidence 8763
No 285
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=37.80 E-value=57 Score=32.64 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=49.3
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++.. ++...++..|.+|++|+++...... ...+. +.|+.....+
T Consensus 103 ~~l~~~l~~f~~~~P~v~i~l~~-------------~~~~~~~~~l~~g~~Dlai~~~~~~---~~~l~-~~~L~~~~~~ 165 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHPNLRIELYE-------------MGTKAQTEALKEGRIDAGFGRLKIS---DPAIK-HSLLRNERLM 165 (312)
T ss_dssp TTHHHHHHHHHHTCTTCEEEEEE-------------CCHHHHHHHHHTTSCSEEEESSCCC---CTTEE-EEEEEEEEEE
T ss_pred hhHHHHHHHHHHHCCCcEEEEEe-------------CCHHHHHHHHHcCCCCEEEEeCCCC---CCCce-EEEeecceEE
Confidence 34568888888776 67888773 2467899999999999998643221 12222 4578888999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 166 ~v~~~~hp 173 (312)
T 2h9b_A 166 VAVHASHP 173 (312)
T ss_dssp EEEETTSG
T ss_pred EEEcCCCc
Confidence 99887643
No 286
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=36.66 E-value=1.2e+02 Score=29.82 Aligned_cols=70 Identities=9% Similarity=0.132 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEecccc-c------hhhhcceeecccceee
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTI-T------SERRAAVDFTMPFMTL 514 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~-t------~~R~~~~~fS~p~~~~ 514 (821)
..++..+.+.+|++++++..+ + .-+..+|.+|++|+.+..... + ..+.+...+..-+...
T Consensus 181 ~~v~~~~Le~~Gy~Ve~~~~~------------~-~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (268)
T 2b4l_A 181 TNVIGKVLEDLGYEVTLTQVE------------A-GPMWTAIATGSADASLSAWLPNTHKAYAAKYKGKYDDIGTSMTGV 247 (268)
T ss_dssp HHHHHHHHHHHTCEEEEEECC------------T-THHHHHHHHTSSSEEEEEEETTTTHHHHHHTTTSEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCceEEEECC------------h-HHHHHHHHCCCCeEEehhhcCcCcHHHHHHHcCCeEEccCCCCCC
Confidence 345555666789999998753 2 567889999999998432211 1 1112334444445566
Q ss_pred ceEEEEEcCC
Q psy16206 515 GISILYRKPA 524 (821)
Q Consensus 515 ~~~l~~~~~~ 524 (821)
...+++|+..
T Consensus 248 ~~~l~Vp~~~ 257 (268)
T 2b4l_A 248 KMGLVVPQYM 257 (268)
T ss_dssp EEEEEEETTC
T ss_pred eEEEEEehhh
Confidence 7888998765
No 287
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=36.13 E-value=59 Score=32.94 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccc
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLT 496 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~ 496 (821)
-.+.+.+.++.|=++++..+|.+..| +-.++++++..|.+|++.....
T Consensus 22 ~~fa~~v~e~s~G~i~i~v~~~g~Lg-------~~~~~~e~v~~G~id~~~~~~~ 69 (312)
T 2xwv_A 22 EMFAKEVKEKSQGKIEISLYPSSQLG-------DDRAMLKQLKDGSLDFTFAESA 69 (312)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTTTC-------CHHHHHHHHHHTSCCEEEECGG
T ss_pred HHHHHHHHHHcCCcEEEEEecCCCCC-------CHHHHHHHHHCCCceEEEeCch
Confidence 35778888888989999998865444 4578999999999999876544
No 288
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=35.96 E-value=43 Score=34.28 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccc
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLT 496 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~ 496 (821)
.+.+.+.++.|-++++..++.+..|. ..++++++..|.+|++.....
T Consensus 29 ~fa~~v~e~s~G~i~i~v~~~g~Lg~-------~~~~~~av~~G~id~~~~~~~ 75 (327)
T 2hpg_A 29 KWAKAVEEKTNGDVRIEVFPSSQLGV-------EEDIIEQIRMGAPVGWNTDSA 75 (327)
T ss_dssp HHHHHHHHHTTTSEEEEEECCCCSCC-------CCCHHHHHHHTCSEEEEEEHH
T ss_pred HHHHHHHHHcCCcEEEEEecCccCCC-------HHHHHHHHhCCCccEEEechH
Confidence 47778888888889999888665553 456999999999999876543
No 289
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=35.83 E-value=2.2e+02 Score=27.25 Aligned_cols=114 Identities=11% Similarity=-0.085 Sum_probs=65.1
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-C--eEEEEcCCCc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-G--IAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-~--V~aiiGp~~s 74 (821)
+|+.+....+ ..-..|++-|+++ . +.++.... . ...+...+.+.+.+++.+ . +.||+.....
T Consensus 122 ~i~~i~~~~~~~~~~~R~~gf~~~l~~---~------~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~ 190 (272)
T 3o74_A 122 SIALIGARPELSVSQARAGGFDEALQG---Y------TGEVRRYQ-G-EAFSRECGQRLMQQLIDDLGGLPDALVTTSYV 190 (272)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHTTT---C------CSEEEEEE-E-SSSSHHHHHHHHHHHHHHHTSCCSEEEESSHH
T ss_pred EEEEEecCCCCccHHHHHHHHHHHHHH---c------CCChheee-c-CCCCHHHHHHHHHHHHhcCCCCCcEEEEeCch
Confidence 4666665433 3334556555443 2 12333332 2 336778888888998876 4 8999986544
Q ss_pred chHHHHHHHhccCC-Cc----eeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 75 ENRNIIESMCQMFD-IP----HVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 75 ~~~~~v~~i~~~~~-iP----~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
.+..+...+.+.+ +| ++++...+.. ....|-+-.+..+...+++..++++..
T Consensus 191 -~a~g~~~al~~~g~vp~di~vvg~d~~~~~---~~~~p~lttv~~~~~~~g~~a~~~l~~ 247 (272)
T 3o74_A 191 -LLQGVFDTLQARPVDSRQLQLGTFGDNQLL---DFLPLPVNAMAQQHGQIAATALELALA 247 (272)
T ss_dssp -HHHHHHHHHHTSCGGGCCCEEEEESCCGGG---GTSSSCEEEEECCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCccceEEEEeCChHHH---HhcCCCceEEEeCHHHHHHHHHHHHHH
Confidence 4444555566655 34 5555433321 222344556777777788877776643
No 290
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=35.63 E-value=60 Score=32.38 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=31.1
Q ss_pred HHHHHHHHhh-cCeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 53 TAKLMCNATS-EGIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 53 a~~~a~~li~-~~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
+.+.+..+++ .|+.+|+-++.+..+.++..+-+..++|+|..
T Consensus 72 ~~~i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi 114 (285)
T 2jfn_A 72 VVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGV 114 (285)
T ss_dssp HHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECC
T ss_pred HHHHHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEeh
Confidence 3344445666 49999998888877667777778889999875
No 291
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=35.16 E-value=77 Score=31.43 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=48.2
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEec---cccchhhhcceeecccceee
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICD---LTITSERRAAVDFTMPFMTL 514 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~---~~~t~~R~~~~~fS~p~~~~ 514 (821)
.+-.+++..+.++. ++++++.. ++..++++.|.+|++|+++.. ... ....+. +.|+...
T Consensus 114 ~~l~~~l~~f~~~~P~i~i~l~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~~~~---~~~~l~-~~~l~~~ 176 (310)
T 2esn_A 114 ALLPPLMNRLQHSAPGVRLRLVN-------------AERKLSVEALASGRIDFALGYDEEHER---LPEGIQ-AHDWFAD 176 (310)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEC-------------CSSSCCHHHHHHTSSSEEEECCSTTCC---CCTTEE-EEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEEe-------------CCcccHHHHHHcCCCCEEEecCccccc---CCcCcc-eeeeecc
Confidence 44567778877765 67777763 245668899999999999864 221 122222 4588889
Q ss_pred ceEEEEEcCCC
Q psy16206 515 GISILYRKPAK 525 (821)
Q Consensus 515 ~~~l~~~~~~~ 525 (821)
..+++++++.+
T Consensus 177 ~~~~v~~~~~p 187 (310)
T 2esn_A 177 RYVVVARRDHP 187 (310)
T ss_dssp CEEEEEESSCT
T ss_pred ceEEEEeCCCC
Confidence 99999987754
No 292
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=34.63 E-value=76 Score=31.63 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=48.5
Q ss_pred HHHHHHHHHH-cCCeEEEEEecCCcccccCCCCCcchHHHHHHHc-CC-cceEEeccccchh---hhcceeecccceeec
Q psy16206 442 VDLIKMIANE-LNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE-QR-ADLAICDLTITSE---RRAAVDFTMPFMTLG 515 (821)
Q Consensus 442 ~dll~~ia~~-l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~-g~-~Di~~~~~~~t~~---R~~~~~fS~p~~~~~ 515 (821)
-++++.+.++ .|+++++..- +-..++..+.+ |. +|+.++.-..... ....++...||....
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~~-------------~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~ 86 (296)
T 3cfx_A 20 EELEAEFEAQHPGVDVQREAA-------------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQ 86 (296)
T ss_dssp HHHHHHHHHHSTTCEEEEEEC-------------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECC
T ss_pred HHHHHHHHHHCCCceEEEEeC-------------chHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeee
Confidence 4788888888 5999988632 44668888888 75 9998763222122 223344566888899
Q ss_pred eEEEEEcCCC
Q psy16206 516 ISILYRKPAK 525 (821)
Q Consensus 516 ~~l~~~~~~~ 525 (821)
.+++++++..
T Consensus 87 l~i~~~~~~~ 96 (296)
T 3cfx_A 87 MILAYTNESK 96 (296)
T ss_dssp EEEEECTTST
T ss_pred EEEEEeCCCc
Confidence 9999987643
No 293
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=33.53 E-value=81 Score=31.23 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=49.9
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-..++..+.++. ++++++... ..+.++..|.+|++|+++...... .....+ -+.|++....+
T Consensus 105 ~~l~~~l~~f~~~~P~i~i~l~~~-------------~~~~~~~~l~~g~~Dlai~~~~~~-~~~~~l-~~~~L~~~~~~ 169 (305)
T 3fxq_A 105 AALPLALASFAREFPDVTVNVRDG-------------MYPAVSPQLRDGTLDFALTAAHKH-DIDTDL-EAQPLYVSDVV 169 (305)
T ss_dssp THHHHHHHHHHHHCTTCEEEEEEC-------------CTTTTHHHHHHTSSSEEEEECCGG-GSCTTE-EEEEEEECCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC-------------CHHHHHHHHHcCCCCEEEecCCCC-CCccCe-eEEEeecCcEE
Confidence 44567888887776 788888742 456789999999999997633221 112222 24688889999
Q ss_pred EEEEcCCC
Q psy16206 518 ILYRKPAK 525 (821)
Q Consensus 518 l~~~~~~~ 525 (821)
++++++.+
T Consensus 170 ~v~~~~hp 177 (305)
T 3fxq_A 170 IVGQRQHP 177 (305)
T ss_dssp EEEETTCT
T ss_pred EEEcCCCC
Confidence 99998754
No 294
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=33.08 E-value=89 Score=31.25 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=49.1
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++.. ++...+...|.+|++|+++..... ....+. +.|+.....+
T Consensus 103 ~~l~~~l~~f~~~~P~v~l~l~~-------------~~~~~~~~~l~~g~~Dlai~~~~~---~~~~l~-~~~L~~~~~~ 165 (313)
T 2h98_A 103 GLLPEIIYLFRQQNPEIHIELIE-------------CGTKDQINALKQGKIDLGFGRLKI---TDPAIR-RIMLHKEQLK 165 (313)
T ss_dssp TTHHHHHHHHHHHCTTSEEEEEE-------------CCHHHHHHHHHHTSCSEEEESSCC---CCTTEE-EEEEEEEEEE
T ss_pred hHHHHHHHHHHHHCCCeEEEEEe-------------CChHHHHHHHHcCCCCEEEEeCCC---CCCCee-EEEeeeCcEE
Confidence 34568888888776 78888873 246789999999999999763322 122222 4578888999
Q ss_pred EEEEcCC
Q psy16206 518 ILYRKPA 524 (821)
Q Consensus 518 l~~~~~~ 524 (821)
++++++.
T Consensus 166 ~v~~~~h 172 (313)
T 2h98_A 166 LAIHKHH 172 (313)
T ss_dssp EEEETTS
T ss_pred EEEcCCC
Confidence 9988764
No 295
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=32.87 E-value=72 Score=31.75 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=48.6
Q ss_pred HHHHHHHHHH-cCCeEEEEEecCCcccccCCCCCcchHHHHHHHc-CC-cceEEeccccchh---hhcceeecccceeec
Q psy16206 442 VDLIKMIANE-LNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE-QR-ADLAICDLTITSE---RRAAVDFTMPFMTLG 515 (821)
Q Consensus 442 ~dll~~ia~~-l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~-g~-~Di~~~~~~~t~~---R~~~~~fS~p~~~~~ 515 (821)
-++++.+.++ .|+++++..- +...++..+.+ |. +|+.++.-..... .+..++...||....
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~~-------------~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~ 86 (295)
T 3cij_A 20 KAFKRAFEEKHPNVEVQTEAA-------------GSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQ 86 (295)
T ss_dssp HHHHHHHHHHCTTCEEEEEEE-------------CHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECC
T ss_pred HHHHHHHHHHCCCceEEEEeC-------------cHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeee
Confidence 4688888888 4999998643 45668888888 75 9998763222111 223344566888999
Q ss_pred eEEEEEcCCC
Q psy16206 516 ISILYRKPAK 525 (821)
Q Consensus 516 ~~l~~~~~~~ 525 (821)
.+++++++..
T Consensus 87 lvl~~~~~~~ 96 (295)
T 3cij_A 87 IVLAYRNDSR 96 (295)
T ss_dssp EEEEECTTST
T ss_pred EEEEEeCCCc
Confidence 9999987643
No 296
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=32.49 E-value=72 Score=29.45 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=40.8
Q ss_pred eeHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceE
Q psy16206 439 GYSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGIS 517 (821)
Q Consensus 439 G~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~ 517 (821)
.+-.+++..+.++. ++++++..-. +. .+|.+|++|+++...... ...+ -+.|+.....+
T Consensus 25 ~~l~~~l~~f~~~~P~i~l~i~~~~------------~~----~~l~~g~~Dl~i~~~~~~---~~~~-~~~~l~~~~~~ 84 (219)
T 3kos_A 25 GCLFPLLSDFKRSYPHIDLHISTHN------------NR----VDPAAEGLDYTIRYGGGA---WHDT-DAQYLCSALMS 84 (219)
T ss_dssp HTHHHHHHHHHHHCTTEEEEEEEEC------------SC----CCHHHHTCSEEEEEECSC---CTTE-EEEEEEECCEE
T ss_pred HHHHhHHHHHHHHCCCceEEEEecc------------Cc----cccccCCccEEEEeCCCC---CCCc-eEEEecccceE
Confidence 44568888887776 6777776432 11 256799999997532221 2222 24678888888
Q ss_pred EEEEc
Q psy16206 518 ILYRK 522 (821)
Q Consensus 518 l~~~~ 522 (821)
++++.
T Consensus 85 ~v~~p 89 (219)
T 3kos_A 85 PLCSP 89 (219)
T ss_dssp EEBCH
T ss_pred EEeCh
Confidence 88763
No 297
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=32.43 E-value=50 Score=33.82 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=37.3
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTRMN 790 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~ 790 (821)
.+.|.+..+|+++..|.++++++.+..++.+++.++.++.+
T Consensus 115 Di~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~r 155 (333)
T 1p7b_A 115 DMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK 155 (333)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999887644
No 298
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=32.32 E-value=3.3e+02 Score=26.44 Aligned_cols=115 Identities=11% Similarity=-0.033 Sum_probs=67.1
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcch
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~~ 76 (821)
+||.+..... ..-..|++-|+++.+-. .... +.. ...+...+.+.+.+++.. .+.|||......
T Consensus 128 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~-------~~~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~- 196 (289)
T 3k9c_A 128 NIAHIDGADAPGGADRRAGFLAAMDRHGLS-------ASAT--VVT-GGTTETEGAEGMHTLLEMPTPPTAVVAFNDRC- 196 (289)
T ss_dssp SEEEECCTTSTTHHHHHHHHHHHHHHTTCG-------GGEE--EEC-CCSSHHHHHHHHHHHHTSSSCCSEEEESSHHH-
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHHCCCC-------CCcc--EEE-CCCCHHHHHHHHHHHHcCCCCCCEEEECChHH-
Confidence 5677765433 44567787777664221 1122 222 226778888889999885 799999765443
Q ss_pred HHHHHHHhccCC--Cc----eeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 77 RNIIESMCQMFD--IP----HVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 77 ~~~v~~i~~~~~--iP----~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
+..+...+.+.+ || ++++...+.. ....|-+..+..+...+++..++++..
T Consensus 197 A~g~~~al~~~g~~vP~di~vig~D~~~~~---~~~~p~lttv~~~~~~~g~~a~~~l~~ 253 (289)
T 3k9c_A 197 ATGVLDLLVRSGRDVPADISVVGYDDSRLA---RIPHVQMTTISQDATHMAEAAVDGALA 253 (289)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEEEECCTTT---TCTTTCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCceEEEEECCHHHH---hcCCCCcceEecCHHHHHHHHHHHHHH
Confidence 334444454443 34 6766544322 222344556677777788877776643
No 299
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=31.34 E-value=82 Score=28.58 Aligned_cols=68 Identities=9% Similarity=0.096 Sum_probs=44.2
Q ss_pred eeHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 439 GYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 439 G~~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
.+-.+++..+.++.++++++... +...+.+.+.+|..|+++.... .....+. +.|+.....++
T Consensus 15 ~~l~~~l~~f~~~~~v~l~l~~~-------------~~~~~~~~l~~g~d~~~i~~~~---~~~~~l~-~~~l~~~~~~~ 77 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSDYLVNIAVD-------------DQDHTVEWLRGGRVLAAVTAHD---KPVQGCR-VTPLGVLRYHA 77 (208)
T ss_dssp TTHHHHHHHHHHTSSCEEEEEEC-------------CSSCHHHHHHTTSCSEEEESCC---SCCTTCE-EEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCeEEEEEeC-------------CcHhHHHHHhcCcceEEEecCC---CCCCCce-EEEccceEEEE
Confidence 45678899998888777777643 4556899999995555443211 1122222 45788888888
Q ss_pred EEEcC
Q psy16206 519 LYRKP 523 (821)
Q Consensus 519 ~~~~~ 523 (821)
+++.+
T Consensus 78 v~~~~ 82 (208)
T 3fd3_A 78 TASPD 82 (208)
T ss_dssp EECHH
T ss_pred EEChH
Confidence 87653
No 300
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.64 E-value=51 Score=25.86 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=46.7
Q ss_pred cEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHH
Q psy16206 109 HGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKE 188 (821)
Q Consensus 109 ~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~ 188 (821)
..+-..-.+...++....+++..|-+-..|+|+.|. +.++++-.+.. ..|..+....- .+||...|..
T Consensus 52 tivvvvvddkewaekairfvkslgaqvliiiydqdq--nrleefsrevr-------rrgfevrtvts---pddfkksler 119 (134)
T 2l69_A 52 TIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQDQ--NRLEEFSREVR-------RRGFEVRTVTS---PDDFKKSLER 119 (134)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSCH--HHHHHHHHHHH-------HTTCCEEEESS---HHHHHHHHHH
T ss_pred eEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCch--hHHHHHHHHHH-------hcCceEEEecC---hHHHHHHHHH
Confidence 345566677889999999999999999999998884 55555555554 44566643322 3566665555
Q ss_pred h
Q psy16206 189 I 189 (821)
Q Consensus 189 l 189 (821)
+
T Consensus 120 l 120 (134)
T 2l69_A 120 L 120 (134)
T ss_dssp H
T ss_pred H
Confidence 4
No 301
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=29.89 E-value=24 Score=33.72 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=30.1
Q ss_pred Hhhc-CeEEEEcCCCcchHHHHHHHhccCCCceeeec
Q psy16206 60 ATSE-GIAAIFGPQSIENRNIIESMCQMFDIPHVEAF 95 (821)
Q Consensus 60 li~~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~ 95 (821)
-+.+ +|..|+||.+|.=......+++.+++|+|+.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHH
Confidence 3344 79999999999888878889999999999863
No 302
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=29.81 E-value=89 Score=30.65 Aligned_cols=79 Identities=10% Similarity=0.016 Sum_probs=47.5
Q ss_pred CEEEEEEecCC--c-hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh-hHHHHH
Q psy16206 134 DTFTIIYETHD--N-LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM-DKTVTI 209 (821)
Q Consensus 134 ~~v~ii~~~~~--~-~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~-~~~~~~ 209 (821)
++++++..+.. + ...++.+.+.+. ..|..+.......+.......++.+.+.+++.||+.... ......
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~-------~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 78 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIE-------RLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPW 78 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHH-------HTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHH-------HcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHH
Confidence 67888887543 2 222233333333 345666655433323334667777888899999876554 456677
Q ss_pred HHHHHHcccc
Q psy16206 210 LKQAKEVHLM 219 (821)
Q Consensus 210 l~~a~~~g~~ 219 (821)
++++.+.|++
T Consensus 79 ~~~~~~~~iP 88 (291)
T 3l49_A 79 LQKINDAGIP 88 (291)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHCCCc
Confidence 8888887763
No 303
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=29.52 E-value=1e+02 Score=30.04 Aligned_cols=77 Identities=9% Similarity=0.075 Sum_probs=44.1
Q ss_pred CCEEEEEEecCC--c-hhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhHHHHH
Q psy16206 133 WDTFTIIYETHD--N-LVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDKTVTI 209 (821)
Q Consensus 133 w~~v~ii~~~~~--~-~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~~~~~ 209 (821)
-++++++..+-. + ...++.+-+.+. ..|..+.......+...-...++.+.+.+++.||+..... ...
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~ 77 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILE-------SRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQT 77 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHH-------TTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHH-------HCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHH
Confidence 367787776543 2 222333333333 4456665544333223345567777778888888876655 556
Q ss_pred HHHHHHccc
Q psy16206 210 LKQAKEVHL 218 (821)
Q Consensus 210 l~~a~~~g~ 218 (821)
++.+.+.|+
T Consensus 78 ~~~l~~~~i 86 (276)
T 3jy6_A 78 VQEILHQQM 86 (276)
T ss_dssp HHHHHTTSS
T ss_pred HHHHHHCCC
Confidence 677766665
No 304
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=28.54 E-value=3.1e+02 Score=26.69 Aligned_cols=116 Identities=8% Similarity=-0.054 Sum_probs=65.6
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~ 75 (821)
+||.+....+ ..-..|++-|+++.+-... . ..+... + .+...+.+.+.+++.. .+.|||.....
T Consensus 128 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~---~----~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~ai~~~nd~- 197 (294)
T 3qk7_A 128 RIAFVSTDARISYVDQRLQGYVQTMSEAGLMPL---A----GYLQKA-D-PTRPGGYLAASRLLALEVPPTAIITDCNM- 197 (294)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCC---T----TCEEEE-C-SSHHHHHHHHHHHHHSSSCCSEEEESSHH-
T ss_pred eEEEEeCCcccchHHHHHHHHHHHHHHCCCCCC---h----hHeecC-C-CCHHHHHHHHHHHHcCCCCCcEEEECCHH-
Confidence 5777765543 3345677777765432211 1 112222 3 5677788888999876 79999976543
Q ss_pred hHHHHHHHhccCC--Cc----eeeeccCCCCCCCCCCCccEEEEecCh-hhHHHHHHHHHHh
Q psy16206 76 NRNIIESMCQMFD--IP----HVEAFWDPNKYFIPTNGVHGVNVYPES-HLISKGISVIIND 130 (821)
Q Consensus 76 ~~~~v~~i~~~~~--iP----~is~~~~~~~~~~~~~~~~~~r~~p~~-~~~~~al~~~~~~ 130 (821)
.+..+...+.+.+ || ++++...+.. ....|-+..+..+. ..+++..++++..
T Consensus 198 ~A~g~~~al~~~G~~vP~di~vig~D~~~~~---~~~~p~lttv~~~~~~~~g~~av~~L~~ 256 (294)
T 3qk7_A 198 LGDGVASALDKAGLLGGEGISLIAYDGLPDD---SLLDIAVTPIVQNTRTSVGKQIASMICD 256 (294)
T ss_dssp HHHHHHHHHHHTTCSSTTSCEEEEETCSCTT---CSCCSCCEEEECCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCceEEEeecCccHH---hhcCCCceeEecCcHHHHHHHHHHHHHH
Confidence 3344444555544 34 6666443332 22233445566666 5777777776643
No 305
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=28.31 E-value=2.4e+02 Score=27.05 Aligned_cols=116 Identities=9% Similarity=-0.083 Sum_probs=64.1
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~ 75 (821)
+||.+....+ ..-..|++-|+++.+-. .. ... +.. ...+...+.+.+.+++.+ .+.||+.....
T Consensus 122 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~-----~~--~~~-~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~- 191 (275)
T 3d8u_A 122 NVGFIGARGNHSTLQRQLHGWQSAMIENYLT-----PD--HFL-TTH-EAPSSQLGAEGLAKLLLRDSSLNALVCSHEE- 191 (275)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHTTCC-----CC--CEE-ECS-SCCCHHHHHHHHHHHHTTCTTCCEEEESSHH-
T ss_pred eEEEEcCCCCCchHHHHHHHHHHHHHHcCCC-----CC--ccE-EEe-CCCChhHHHHHHHHHHhCCCCCCEEEEcCcH-
Confidence 5777776533 34456787777764211 11 111 122 224677777888888876 69999976543
Q ss_pred hHHHHHHHhccCC--Cc----eeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 76 NRNIIESMCQMFD--IP----HVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 76 ~~~~v~~i~~~~~--iP----~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
.+..+...+.+.+ +| ++++...+.. ....|-+..+..+...+++..++++..
T Consensus 192 ~a~g~~~al~~~g~~vP~di~vvg~d~~~~~---~~~~p~lttv~~~~~~~g~~a~~~l~~ 249 (275)
T 3d8u_A 192 IAIGALFECHRRVLKVPTDIAIICLEGSSMG---EHAYPSLTSAEFDYERMGTKAAEKLLH 249 (275)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEESSCCHHH---HTSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCceEEEecCCchHh---hhcCCCcceecCCHHHHHHHHHHHHHH
Confidence 3444445554444 45 5665433211 111233445666667777777776643
No 306
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.21 E-value=2.4e+02 Score=22.91 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=44.7
Q ss_pred EEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCC--hhHHHHHHHH
Q psy16206 135 TFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCS--MDKTVTILKQ 212 (821)
Q Consensus 135 ~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~--~~~~~~~l~~ 212 (821)
+|.|+-++......++..++..+ ..+. . ..+....+..+++..+++|++... ..+...++++
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g----------~~v~--~----~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~ 68 (127)
T 3i42_A 5 QALIVEDYQAAAETFKELLEMLG----------FQAD--Y----VMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQ 68 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTT----------EEEE--E----ESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHcC----------CCEE--E----ECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 44444333335677777877765 3332 2 245677888888889999999865 4567888888
Q ss_pred HHHcc
Q psy16206 213 AKEVH 217 (821)
Q Consensus 213 a~~~g 217 (821)
+++..
T Consensus 69 l~~~~ 73 (127)
T 3i42_A 69 LRALP 73 (127)
T ss_dssp HHHSC
T ss_pred HHhhh
Confidence 88763
No 307
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=28.17 E-value=76 Score=32.72 Aligned_cols=70 Identities=11% Similarity=0.040 Sum_probs=47.3
Q ss_pred HHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcce--eecccceeeceEE
Q psy16206 442 VDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAV--DFTMPFMTLGISI 518 (821)
Q Consensus 442 ~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~--~fS~p~~~~~~~l 518 (821)
-++++.+.++. +.++++. .+.-...+.++.+|++|+++.....+++..+.. ....|+..+.+++
T Consensus 42 ~~~~~~f~~~~p~v~i~v~-------------~~gS~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l~~~pi~~d~lvv 108 (350)
T 1pc3_A 42 NLWGPAFHERYPNVTITAQ-------------GTGSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGLMNIALAISAQQV 108 (350)
T ss_dssp HHHHHHHHHHSTTEEEECC-------------BCCHHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEe-------------cCCCHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCCEEeeEEeeeEEE
Confidence 45666666543 5566554 224567899999999999987776665432110 1246889999999
Q ss_pred EEEcCC
Q psy16206 519 LYRKPA 524 (821)
Q Consensus 519 ~~~~~~ 524 (821)
+++.+.
T Consensus 109 vvn~~~ 114 (350)
T 1pc3_A 109 NYNLPG 114 (350)
T ss_dssp EECCTT
T ss_pred EEeCCc
Confidence 998765
No 308
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=26.35 E-value=34 Score=32.29 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=26.7
Q ss_pred eEEEEcCCCcchHHHHHHHhccCCCceeeec
Q psy16206 65 IAAIFGPQSIENRNIIESMCQMFDIPHVEAF 95 (821)
Q Consensus 65 V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~ 95 (821)
+..++||.+|.=......+++.+++|+|+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4678999999887778889999999999863
No 309
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=26.09 E-value=1.8e+02 Score=28.27 Aligned_cols=116 Identities=12% Similarity=-0.019 Sum_probs=65.5
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~ 75 (821)
+|+.+....+ ..-..|++-|+++.+-.. ....+. . ...+...+.+.+.+++.. .+.||+.....
T Consensus 133 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~-------~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~- 202 (292)
T 3k4h_A 133 QIAFIGGGSDLLVTRDRLAGMSDALKLADIVL-------PKEYIL-H-FDFSRESGQQAVEELMGLQQPPTAIMATDDL- 202 (292)
T ss_dssp CEEEEESCTTBHHHHHHHHHHHHHHHHTTCCC-------CGGGEE-E-CCSSHHHHHHHHHHHHTSSSCCSEEEESSHH-
T ss_pred eEEEEeCcccchhHHHHHHHHHHHHHHcCCCC-------ChheEE-e-cCCCHHHHHHHHHHHHcCCCCCcEEEEcChH-
Confidence 5777776544 334577777777643221 111122 2 225777888889999976 79999976544
Q ss_pred hHHHHHHHhccCC--Cc----eeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 76 NRNIIESMCQMFD--IP----HVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 76 ~~~~v~~i~~~~~--iP----~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
.+..+...+.+.+ +| ++++...+.. ....|-+-.+..+...+++..++++..
T Consensus 203 ~a~g~~~al~~~g~~vP~di~vig~d~~~~~---~~~~p~lttv~~~~~~~g~~av~~l~~ 260 (292)
T 3k4h_A 203 IGLGVLSALSKKGFVVPKDVSIVSFNNALLS---EIASPPLSTVDVNIYQLGYEAAKALVD 260 (292)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEESCCHHH---HHSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeEEEEEecCcchh---hccCCCceEEecCHHHHHHHHHHHHHH
Confidence 3334445555544 34 6666433211 111233455666666777777666543
No 310
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=26.03 E-value=4e+02 Score=25.77 Aligned_cols=116 Identities=13% Similarity=0.078 Sum_probs=64.7
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~ 75 (821)
+||.+....+ ..-..|++-|+++.+-. .. ...+ .. ...+...+.+.+.+++.+ .+.||+.....
T Consensus 130 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-----~~--~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~- 199 (290)
T 2rgy_A 130 KLAVISGPFTASDNVERLDGFFDELARHGIA-----RD--SVPL-IE-SDFSPEGGYAATCQLLESKAPFTGLFCANDT- 199 (290)
T ss_dssp SEEEEESCTTCHHHHHHHHHHHHHHHTTTCC-----GG--GSCE-EE-CCSSHHHHHHHHHHHHHHTCCCSEEEESSHH-
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHcCCC-----CC--cccE-Ee-cCCChhHHHHHHHHHHhCCCCCcEEEECCcH-
Confidence 5788876543 33456777777653211 01 0111 22 225667777888888875 78999965443
Q ss_pred hHHHHHHHhccCC--Cc----eeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 76 NRNIIESMCQMFD--IP----HVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 76 ~~~~v~~i~~~~~--iP----~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
.+..+...+.+.+ +| ++++...+.. ....|-+..+..+...+++..++++..
T Consensus 200 ~A~g~~~al~~~G~~vP~di~vvg~D~~~~~---~~~~p~lttv~~~~~~~g~~a~~~l~~ 257 (290)
T 2rgy_A 200 MAVSALARFQQLGISVPGDVSVIGYDDDYSA---AYAAPALTSVHIPTAELTQNAVRWLIN 257 (290)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEEECCTTS---TTSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEeCCchHh---cccCCCceEEeCCHHHHHHHHHHHHHH
Confidence 3444444554443 34 6777544432 112344555666767777777776543
No 311
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=25.94 E-value=1.2e+02 Score=32.47 Aligned_cols=144 Identities=7% Similarity=-0.009 Sum_probs=88.1
Q ss_pred ChhHHHHHHHHHhhcCeEEEE--cCCCc--c-----hHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhh
Q psy16206 49 DSLHTAKLMCNATSEGIAAIF--GPQSI--E-----NRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHL 119 (821)
Q Consensus 49 ~~~~a~~~a~~li~~~V~aii--Gp~~s--~-----~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~ 119 (821)
-+..+...+.++++.|+.+++ -...+ . ....+...++++++.+|.+.+.--. ++. ...-....|..
T Consensus 73 p~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~Gv~--~~~-~~~~~~~~~~~-- 147 (457)
T 2csu_A 73 PKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVGIM--NTH-VDLNATFITVA-- 147 (457)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCEEE--EGG-GTEEEESSCCC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcceEE--ccC-CCceeeecCCC--
Confidence 456667777788887776543 22221 1 2566778889999999988654221 111 11112222321
Q ss_pred HHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC-CCChHHHHHHhhcC-CCcEE
Q psy16206 120 ISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD-TDDYRPLLKEIKNS-SESHI 197 (821)
Q Consensus 120 ~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~-~~d~~~~l~~lk~~-~~~~i 197 (821)
. + -++++|.........+-..+...+ . |.. ....+-.. ..++.+.|+.+.+- ..++|
T Consensus 148 ---------~-~--G~v~~vsqSG~~~~~~~~~~~~~g-------~-G~s-~~vs~G~~~~~~~~d~l~~~~~D~~t~~I 206 (457)
T 2csu_A 148 ---------K-K--GNVAFISQSGALGAGIVYKTIKED-------I-GFS-KFISVGNMADVDFAELMEYLADTEEDKAI 206 (457)
T ss_dssp ---------E-E--CSEEEEESCHHHHHHHHHHHHHTT-------C-EES-EEEECTTCCSSCHHHHHHHHTTCSSCCEE
T ss_pred ---------C-C--CCEEEEeCCHHHHHHHHHHHHhcC-------C-Cee-EEEECCCcCCCCHHHHHHHHhcCCCCCEE
Confidence 1 2 468888877765555545555544 1 222 22333222 67899999999765 88999
Q ss_pred EEeCCh-hHHHHHHHHHHHccc
Q psy16206 198 LLDCSM-DKTVTILKQAKEVHL 218 (821)
Q Consensus 198 vl~~~~-~~~~~~l~~a~~~g~ 218 (821)
++...+ .+.+.|++.|+....
T Consensus 207 ~l~~E~i~~~~~f~~~a~~~~~ 228 (457)
T 2csu_A 207 ALYIEGVRNGKKFMEVAKRVTK 228 (457)
T ss_dssp EEEESCCSCHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHhcC
Confidence 999887 778889999888754
No 312
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=25.83 E-value=2.9e+02 Score=22.97 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=43.9
Q ss_pred CEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh--hHHHHHHH
Q psy16206 134 DTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM--DKTVTILK 211 (821)
Q Consensus 134 ~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~--~~~~~~l~ 211 (821)
.++.++-++......++..++..+ ..+. . ..+..+.++.+++..+++|++.... .+...+++
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g----------~~v~--~----~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~ 71 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSDAG----------FHII--S----ADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIR 71 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT----------CEEE--E----ESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCC----------eEEE--E----eCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 344444333335677777777665 3332 2 2456678888888899999998653 45778888
Q ss_pred HHHHc
Q psy16206 212 QAKEV 216 (821)
Q Consensus 212 ~a~~~ 216 (821)
++++.
T Consensus 72 ~l~~~ 76 (142)
T 3cg4_A 72 AILDN 76 (142)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 88873
No 313
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=25.40 E-value=2.7e+02 Score=27.20 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=66.6
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcch
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIEN 76 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~~ 76 (821)
+|+.+..... ..-..|++-|+++.+ .+.++..+. . ...+...+.+.+.+++.. ++.||+......
T Consensus 129 ~i~~i~~~~~~~~~~R~~gf~~~l~~~~-------~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~- 198 (305)
T 3g1w_A 129 EVAVITLPNQLNHQERTTGFKETLEAEF-------PAIEVIAVE-D-GRGDSLHSRRVAHQLLEDYPNLAGIFATEANG- 198 (305)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHHC-------TTEEEEEEE-E-CTTCHHHHHHHHHHHHHHCTTEEEEEESSHHH-
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhhC-------CCCEEEEEe-c-CCCCHHHHHHHHHHHHHhCCCceEEEECCCcc-
Confidence 4677765433 345577887777643 122333332 2 336788888899998876 799999865543
Q ss_pred HHHHHHHhccCC----CceeeeccCCCCCCCCCCCcc-EEEEecChhhHHHHHHHHHHh
Q psy16206 77 RNIIESMCQMFD----IPHVEAFWDPNKYFIPTNGVH-GVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 77 ~~~v~~i~~~~~----iP~is~~~~~~~~~~~~~~~~-~~r~~p~~~~~~~al~~~~~~ 130 (821)
+..+...+...+ +.++++..++.... .-..+. +..+..+...+++..++++..
T Consensus 199 a~g~~~al~~~g~~~di~vig~d~~~~~~~-~~~~~~l~ttv~~~~~~~g~~av~~l~~ 256 (305)
T 3g1w_A 199 GVGVGDAVRLESRAGEIQIISFDTDKGTLD-LVDEGIISATLAQGTWNMGYWSLTYLFH 256 (305)
T ss_dssp HHHHHHHHHHTTCTTTSEEEEESCCHHHHH-HHHTTSSCEEEEECHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCCCCeEEEEeCCCHHHHH-HHHcCceEEEEecChHHHHHHHHHHHHH
Confidence 334444455544 56777754431100 011222 245555666677766666543
No 314
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=24.94 E-value=99 Score=31.51 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHc---CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEe
Q psy16206 441 SVDLIKMIANEL---NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAIC 493 (821)
Q Consensus 441 ~~dll~~ia~~l---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~ 493 (821)
|-++...+.+.+ +.+++.+... +..+++.++.+|++|++..
T Consensus 19 C~~l~~~~~~~~~~~~~~vecv~~~------------dy~~ci~ai~~g~aD~~~l 62 (327)
T 1ryo_A 19 CQSFRDHMKSVIPSDGPSVACVKKA------------SYLDCIRAIAANEADAVTL 62 (327)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEEEES------------SHHHHHHHHHTTSCCBEEE
T ss_pred HHHHHHHHhhccccCCCceEEEecC------------CHHHHHHHHHcCCCcEEEe
Confidence 455555555555 7788888765 7899999999999999864
No 315
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=24.90 E-value=54 Score=33.36 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=37.1
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTRMN 790 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~~~ 790 (821)
.+.|.+..+|+++..+.++++++.+.-++.+++.++.++.+
T Consensus 97 Di~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r 137 (321)
T 2qks_A 97 DMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKR 137 (321)
T ss_dssp SSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred CcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999999887643
No 316
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=24.51 E-value=2.8e+02 Score=22.67 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=45.3
Q ss_pred CEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh--hHHHHHHH
Q psy16206 134 DTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM--DKTVTILK 211 (821)
Q Consensus 134 ~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~--~~~~~~l~ 211 (821)
.+|.|+-++......++..++..+ ..+. . ..+....+..+++..+++|++.... .+...+++
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g----------~~v~--~----~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~ 70 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDH----------WQVE--I----AHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIR 70 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT----------CEEE--E----ESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHCC----------cEEE--E----eCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHH
Confidence 455555333345677777777654 3333 2 2456677888888899999998654 45778888
Q ss_pred HHHHccc
Q psy16206 212 QAKEVHL 218 (821)
Q Consensus 212 ~a~~~g~ 218 (821)
++++...
T Consensus 71 ~l~~~~~ 77 (132)
T 3lte_A 71 SLRQNKV 77 (132)
T ss_dssp HHHTTTC
T ss_pred HHHhcCc
Confidence 8887653
No 317
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=24.43 E-value=93 Score=31.01 Aligned_cols=78 Identities=8% Similarity=0.070 Sum_probs=44.5
Q ss_pred CEEEEEEecC--CchhHH-HHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChhH-HHHH
Q psy16206 134 DTFTIIYETH--DNLVYL-QQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMDK-TVTI 209 (821)
Q Consensus 134 ~~v~ii~~~~--~~~~~~-~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~~-~~~~ 209 (821)
++++++..+. .+...+ +.+-+.+. ..|..+.......+.......++.+.+.+++.||+...... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~-------~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 75 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAE-------SLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNV 75 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHH-------HTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHH-------HcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHH
Confidence 5688887653 232222 22323332 33566655443332333456677777889999888765433 3567
Q ss_pred HHHHHHccc
Q psy16206 210 LKQAKEVHL 218 (821)
Q Consensus 210 l~~a~~~g~ 218 (821)
++++.+.|+
T Consensus 76 ~~~~~~~~i 84 (313)
T 3m9w_A 76 VKEAKQEGI 84 (313)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHCCC
Confidence 777777765
No 318
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=24.37 E-value=3.1e+02 Score=22.88 Aligned_cols=69 Identities=12% Similarity=0.282 Sum_probs=44.8
Q ss_pred EEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh--hHHHHHHHH
Q psy16206 135 TFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM--DKTVTILKQ 212 (821)
Q Consensus 135 ~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~--~~~~~~l~~ 212 (821)
+|.|+-++......++..++..+ ....+.. ..+....+..++...+++|++.... .+...++++
T Consensus 7 ~ILivdd~~~~~~~l~~~L~~~~----------~~~~v~~----~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~ 72 (144)
T 3kht_A 7 RVLVVEDNPDDIALIRRVLDRKD----------IHCQLEF----VDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSA 72 (144)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTT----------CCEEEEE----ESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhcC----------CCeeEEE----ECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHH
Confidence 44444333335677788887776 2222222 2456778888888899999998664 457788888
Q ss_pred HHHcc
Q psy16206 213 AKEVH 217 (821)
Q Consensus 213 a~~~g 217 (821)
+++.+
T Consensus 73 lr~~~ 77 (144)
T 3kht_A 73 VRKPG 77 (144)
T ss_dssp HHSSS
T ss_pred HHhcc
Confidence 88743
No 319
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=24.26 E-value=58 Score=34.17 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCCCEEEEEEecCCch-hHHHHHHHhcCCCCCcCCCCCCeEEE-EEcCCC--CCChHHHHHHhhcCCCcEE
Q psy16206 122 KGISVIINDMDWDTFTIIYETHDNL-VYLQQVLENAHDDDKEIRPGRPSVTI-RQLPPD--TDDYRPLLKEIKNSSESHI 197 (821)
Q Consensus 122 ~al~~~~~~~~w~~v~ii~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~v~~-~~~~~~--~~d~~~~l~~lk~~~~~~i 197 (821)
+.+.++++.+|.+++.||++..-.. ...+++.+.+. ..|+.+.. ..+.++ .++..+.++.+++.++|.|
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~-------~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~I 92 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLK-------AQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFV 92 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHH-------TTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHH-------HcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEE
Confidence 4566777889999999999865211 12333444333 33455543 334433 4557778888888899999
Q ss_pred EEeCCh--hHHHHHHHHHH
Q psy16206 198 LLDCSM--DKTVTILKQAK 214 (821)
Q Consensus 198 vl~~~~--~~~~~~l~~a~ 214 (821)
|-.+.+ -++..++....
T Consensus 93 IavGGGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 93 ISLGGGSPHDCAKAIALVA 111 (383)
T ss_dssp EEEESHHHHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHHHH
Confidence 888776 33444544433
No 320
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=24.25 E-value=53 Score=31.25 Aligned_cols=37 Identities=3% Similarity=0.060 Sum_probs=34.0
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTN 786 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~ 786 (821)
...|.+..+|+++..|+++++.+.+..++++++.++-
T Consensus 184 di~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 184 DVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999998864
No 321
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=24.04 E-value=1.2e+02 Score=27.36 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEe
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLD 200 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~ 200 (821)
+.....+.++++-+++.++-++-..-...+.+++.+. +.|..+.+.... +....+++-+..+.+++++.
T Consensus 15 GQV~t~W~k~~~~~~IiVvnD~vA~D~~~k~~lk~a~-------P~gvk~~i~sve----~ai~~~~~~~~~~~~v~ll~ 83 (164)
T 1nrz_A 15 GQVTTVWSKVANAQRIIICNDDVFNDEVRRTLLRQAA-------PPGMKVNVVSLE----KAVAVYHNPQYQDETVFYLF 83 (164)
T ss_dssp HHHHHHHHHHHTCSEEEEECHHHHTCHHHHHHHHHTC-------CTTCEEEEECHH----HHHHHHTCGGGTTCEEEEEE
T ss_pred hhheeeeccccCCCEEEEeCccccCCHHHHHHHHhcC-------CCCCeEEEEEHH----HHHHHHhcccCCCceEEEEE
Confidence 5677888999999998887554444455666777776 777777655542 23333333333467788888
Q ss_pred CChhHHHHHHH
Q psy16206 201 CSMDKTVTILK 211 (821)
Q Consensus 201 ~~~~~~~~~l~ 211 (821)
-++.++..+++
T Consensus 84 k~p~d~~~lve 94 (164)
T 1nrz_A 84 TNPHDVLTMVR 94 (164)
T ss_dssp SSHHHHHHHHT
T ss_pred CCHHHHHHHHH
Confidence 88888877754
No 322
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=23.95 E-value=1.2e+02 Score=27.26 Aligned_cols=80 Identities=8% Similarity=0.093 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEe
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLD 200 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~ 200 (821)
+.....+.++++-+++.|+-++-..-...+.+++.+. +.|..+.+.... +....+++-+..+.+++++.
T Consensus 18 GQV~t~W~~~~~~~~IiVvnD~vA~D~~~k~~lk~a~-------P~gvk~~i~sve----~ai~~~~~~~~~~~~v~ll~ 86 (165)
T 1vsq_C 18 GQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVA-------PPGVTAHVVDVA----KMIRVYNNPKYAGERVMLLF 86 (165)
T ss_dssp TTHHHHHHHHTTCSEEEEECHHHHTCHHHHHHHHHTC-------CTTCEEEEECHH----HHHHHHTCGGGTTCEEEEEE
T ss_pred hheeeeeccccCCCEEEEeCccccCCHHHHHHHHhcC-------CCCCeEEEEEHH----HHHHHHhccccCCcEEEEEE
Confidence 4677888999999998887554444455666777776 777777655542 23333333333467788888
Q ss_pred CChhHHHHHHH
Q psy16206 201 CSMDKTVTILK 211 (821)
Q Consensus 201 ~~~~~~~~~l~ 211 (821)
-++.++..+++
T Consensus 87 k~p~d~~~lve 97 (165)
T 1vsq_C 87 TNPTDVERLVE 97 (165)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88888877764
No 323
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=23.91 E-value=4.9e+02 Score=25.19 Aligned_cols=113 Identities=11% Similarity=0.035 Sum_probs=64.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc-----CeEEEEcCC
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE-----GIAAIFGPQ 72 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~-----~V~aiiGp~ 72 (821)
+||.+....+ ..-..|++-|+++. + ..+. +...+ .+...+.+.+.+++.. .+.||+...
T Consensus 133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~---g------~~~~--~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~ 200 (295)
T 3hcw_A 133 ELIFITEKGNFEVSKDRIQGFETVASQF---N------LDYQ--IIETS-NEREVILNYMQNLHTRLKDPNIKQAIISLD 200 (295)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHT---T------CEEE--EEEEC-SCHHHHHHHHHHHHHHHTCTTSCEEEEESS
T ss_pred cEEEEcCCccchhHHHHHHHHHHHHHHc---C------CCee--EEecc-CCHHHHHHHHHHHHhhcccCCCCcEEEECC
Confidence 5777765433 34457777777653 2 1333 22213 5667777778887764 589999644
Q ss_pred CcchHHHHHHHhccCC--Cc----eeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 73 SIENRNIIESMCQMFD--IP----HVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 73 ~s~~~~~v~~i~~~~~--iP----~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
. ..+..+...+.+.+ || ++++...+.. ....|-+-.+..+...+++..++++..
T Consensus 201 d-~~A~g~~~al~~~g~~vP~di~vig~D~~~~~---~~~~p~lttv~~~~~~~g~~a~~~l~~ 260 (295)
T 3hcw_A 201 A-MLHLAILSVLYELNIEIPKDVMTATFNDSYLT---EIASPPQTCIDIKPRMLGQQAGSAILN 260 (295)
T ss_dssp H-HHHHHHHHHHHHTTCCTTTTEEEEEECCSHHH---HTSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHcCCCCCCceEEEEeCChhHH---hhCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 3 34455555565555 45 5555332211 122344556666777788877776643
No 324
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=23.75 E-value=78 Score=33.17 Aligned_cols=81 Identities=11% Similarity=-0.015 Sum_probs=50.7
Q ss_pred HHHHHHHhCCCCEEEEEEecCCc------hhHHHHHHHhcCCCCCcCCCCCCeEEEE-EcCCC--CCChHHHHHHhhcCC
Q psy16206 123 GISVIINDMDWDTFTIIYETHDN------LVYLQQVLENAHDDDKEIRPGRPSVTIR-QLPPD--TDDYRPLLKEIKNSS 193 (821)
Q Consensus 123 al~~~~~~~~w~~v~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~--~~d~~~~l~~lk~~~ 193 (821)
.+.+.++.+|.+++.|+++..-. ...+.+.++.. |..+... .+.++ .+.+...++.+++.+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~----------g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 92 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREA----------GIEVAIFDGVEPNPKDTNVRDGLAVFRREQ 92 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHT----------TCEEEEECCCCSSCBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHc----------CCeEEEECCccCCCCHHHHHHHHHHHHhcC
Confidence 46667777888999999987532 33444444444 3455332 24333 345677888888899
Q ss_pred CcEEEEeCCh--hHHHHHHHHH
Q psy16206 194 ESHILLDCSM--DKTVTILKQA 213 (821)
Q Consensus 194 ~~~ivl~~~~--~~~~~~l~~a 213 (821)
+|.||-.+.+ -++..++...
T Consensus 93 ~d~IIavGGGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 93 CDIIVTVGGGSPHDCGKGIGIA 114 (387)
T ss_dssp CCEEEEEESHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcchhhHHHHHHHH
Confidence 9999977665 3444455443
No 325
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=23.73 E-value=1.2e+02 Score=29.80 Aligned_cols=79 Identities=6% Similarity=0.057 Sum_probs=46.0
Q ss_pred CEEEEEEecCC--chh-HHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCChh----HH
Q psy16206 134 DTFTIIYETHD--NLV-YLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSMD----KT 206 (821)
Q Consensus 134 ~~v~ii~~~~~--~~~-~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~~----~~ 206 (821)
++++++..+.. +.. .++.+-+.+. ..|..+.......+...-...++.+.+.+.+.||+..... ..
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~-------~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 88 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLS-------EQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPN 88 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHH-------HTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTT
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHH-------HCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCc
Confidence 78998887643 222 2222323332 3456665554333233345677778888999998865432 34
Q ss_pred HHHHHHHHHcccc
Q psy16206 207 VTILKQAKEVHLM 219 (821)
Q Consensus 207 ~~~l~~a~~~g~~ 219 (821)
...++++.+.|++
T Consensus 89 ~~~~~~~~~~~iP 101 (298)
T 3tb6_A 89 IGYYLNLEKNGIP 101 (298)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCC
Confidence 4567777777753
No 326
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=23.66 E-value=5.5e+02 Score=25.52 Aligned_cols=142 Identities=11% Similarity=0.044 Sum_probs=85.0
Q ss_pred ChhHHHHHHHHHhhcCeEEE--EcCCCc-chHHHHHHHhccC-CCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHH
Q psy16206 49 DSLHTAKLMCNATSEGIAAI--FGPQSI-ENRNIIESMCQMF-DIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGI 124 (821)
Q Consensus 49 ~~~~a~~~a~~li~~~V~ai--iGp~~s-~~~~~v~~i~~~~-~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al 124 (821)
-+..+.+.+.++++.|+.++ +-+..+ .....+...++.. ++.+|.+.+---. ++.. ...-..|..
T Consensus 80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~Gii--~p~~--~~~~~~~~~------- 148 (305)
T 2fp4_A 80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVI--NPGE--CKIGIMPGH------- 148 (305)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSCEEE--ETTT--EEEESSCGG-------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCCeEe--cccc--cceeecccc-------
Confidence 34556667777888877663 334332 2233677888888 9999987543111 1111 111122221
Q ss_pred HHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC---CCChHHHHHHhhcC-CCcEEEEe
Q psy16206 125 SVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD---TDDYRPLLKEIKNS-SESHILLD 200 (821)
Q Consensus 125 ~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~---~~d~~~~l~~lk~~-~~~~ivl~ 200 (821)
.+.--+|+++.........+-..+...+ . |... ...+-.. ..++.+.|+.+.+- ..++|++.
T Consensus 149 -----~~~~G~va~vSqSG~l~~~~~~~~~~~g-------~-G~S~-~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~ 214 (305)
T 2fp4_A 149 -----IHKKGRIGIVSRSGTLTYEAVHQTTQVG-------L-GQSL-CVGIGGDPFNGTDFTDCLEIFLNDPATEGIILI 214 (305)
T ss_dssp -----GCCEEEEEEEESCSHHHHHHHHHHHHTT-------C-CEEE-EEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEE
T ss_pred -----CCCCCCEEEEecchHHHHHHHHHHHhcC-------C-CeeE-EeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEE
Confidence 1233569999888765555555555554 1 3222 3344332 57899999999765 78899888
Q ss_pred CCh-----hHHHHHHHHHHH
Q psy16206 201 CSM-----DKTVTILKQAKE 215 (821)
Q Consensus 201 ~~~-----~~~~~~l~~a~~ 215 (821)
+.. .+++.|++++++
T Consensus 215 ~E~~g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 215 GEIGGNAEENAAEFLKQHNS 234 (305)
T ss_dssp EESSSSHHHHHHHHHHHHSC
T ss_pred EecCCchhhHHHHHHHHHHH
Confidence 775 458899998765
No 327
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=23.65 E-value=2.5e+02 Score=27.36 Aligned_cols=105 Identities=10% Similarity=-0.042 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcchHHHHHHHhccCC-
Q psy16206 12 EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIENRNIIESMCQMFD- 88 (821)
Q Consensus 12 ~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~~~~~v~~i~~~~~- 88 (821)
..-..|++-|+++.+- ..++...... + .+...+.+.+.+++.+ .+.||+..... + ..+...+.+.+
T Consensus 155 ~~R~~gf~~~l~~~g~-------~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a-~g~~~al~~~g~ 223 (304)
T 3gbv_A 155 ESREIGFRQYMQEHHP-------ACNILELNLH-A-DLNIEDSRMLDDFFREHPDVKHGITFNSK-V-YIIGEYLQQRRK 223 (304)
T ss_dssp HHHHHHHHHHHHHHCT-------TSEEEEEEEE-S-SCSSCHHHHHHHHHHHCTTCCEEEESSSC-T-HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhCC-------CcEEEEeeec-C-CCHHHHHHHHHHHHHhCCCeEEEEEcCcc-h-HHHHHHHHHcCC
Confidence 4456788888877532 2233333332 3 4566677888888876 79999988876 4 44455555555
Q ss_pred --CceeeeccCCCCCCCCCCCccEE--EEecChhhHHHHHHHHHH
Q psy16206 89 --IPHVEAFWDPNKYFIPTNGVHGV--NVYPESHLISKGISVIIN 129 (821)
Q Consensus 89 --iP~is~~~~~~~~~~~~~~~~~~--r~~p~~~~~~~al~~~~~ 129 (821)
+.++++..++... ....+-+. .+..+...+++..++++.
T Consensus 224 ~di~vig~d~~~~~~--~~~~~~~~~~tv~~~~~~~g~~av~~l~ 266 (304)
T 3gbv_A 224 SDFSLIGYDLLERNV--TCLKEGTVSFLIAQQPELQGFNSIKTLC 266 (304)
T ss_dssp CSCEEEEESCCHHHH--HHHHHTSEEEEEECCHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCHHHH--HHHHcCceEEEEEeCHHHHHHHHHHHHH
Confidence 5666664433200 10111122 555666667776666654
No 328
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}
Probab=23.44 E-value=6.1e+02 Score=25.96 Aligned_cols=152 Identities=11% Similarity=-0.025 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHhhcCeEEEEcCC----CcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHH
Q psy16206 49 DSLHTAKLMCNATSEGIAAIFGPQ----SIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGI 124 (821)
Q Consensus 49 ~~~~a~~~a~~li~~~V~aiiGp~----~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al 124 (821)
|...+++...++...||..|+++. .......+..+++..++-++.....-.. ...|..+.. +. +.+
T Consensus 73 ~~~~~~~el~~~~~aGv~tiV~~~g~~g~~r~~~~l~~la~~~gi~i~~~tG~y~~----~~~P~~~~~--~~----~~L 142 (365)
T 3rhg_A 73 PIEDVIFELNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGLYIE----KFEGKRLAD--DI----DAM 142 (365)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEECCCSGGGTCCHHHHHHHHHHHCCEEECEECCCCH----HHHGGGGGS--CH----HHH
T ss_pred cHHHHHHHHHHHHhcCCCeEEEcCCCCCCCCCHHHHHHHHHHHCCcEEEEeCccCC----CCCchhhcC--CH----HHH
Confidence 566788888888888999999988 3357777888888888765543221110 001221111 22 334
Q ss_pred HHHHHh--------CCCCE--EEEEEecCC----chhHHHHHHHhcCCCCCcCCCC-CCeEEEEEcCCCCCChHHHHHHh
Q psy16206 125 SVIIND--------MDWDT--FTIIYETHD----NLVYLQQVLENAHDDDKEIRPG-RPSVTIRQLPPDTDDYRPLLKEI 189 (821)
Q Consensus 125 ~~~~~~--------~~w~~--v~ii~~~~~----~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~~~~~~~~d~~~~l~~l 189 (821)
++++.+ -+.+- ++-+.-+.. ....++..++... .. |..|.+.. +...+...+.+.-+
T Consensus 143 ~~~~~~ei~~gi~~t~vkag~IGEiGld~~~t~~q~~~f~aq~~~A~-------~~~glPV~iH~-~r~~~a~~e~l~iL 214 (365)
T 3rhg_A 143 AKMIDDELNIGIDGTDIRAGMIGEIGVSPFFTDGEKNSLRAAALAQN-------NNPYASMNIHM-PGWQRRGDEVLDIL 214 (365)
T ss_dssp HHHHHHHHHTCSTTSSCCCCEEEEEECCTTCCHHHHHHHHHHHHHHT-------TCTTCEEEEEC-CTTSCCHHHHHHHH
T ss_pred HHHHHHHHHhccccCCceeEEEEEEEcCCCCCHHHHHHHHHHHHHHH-------HhcCCcEEEEC-CCCCcCHHHHHHHH
Confidence 333322 12232 223333332 3456666666666 55 66665552 22235567778878
Q ss_pred hcC-CC---cEEEEeCChh-HHHHHHHHHHHccc
Q psy16206 190 KNS-SE---SHILLDCSMD-KTVTILKQAKEVHL 218 (821)
Q Consensus 190 k~~-~~---~~ivl~~~~~-~~~~~l~~a~~~g~ 218 (821)
++. +. ++++.+|... ......+++.++|.
T Consensus 215 ~e~~~~~~~~vvi~H~~rs~~~~e~a~~~l~~G~ 248 (365)
T 3rhg_A 215 LTEMGCDPAKISLAHSDPSGKDIDYQCKMLDRGV 248 (365)
T ss_dssp TTTTCCCGGGEEESCCGGGTTCHHHHHHHHHTTC
T ss_pred HhccCCCCCceEEecCCCCCCCHHHHHHHHhCCC
Confidence 765 43 3567788843 33455556666774
No 329
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=23.40 E-value=99 Score=30.81 Aligned_cols=55 Identities=9% Similarity=0.027 Sum_probs=42.2
Q ss_pred EEEEEecCCChhHHHHHHHHHhhc-CeEEEEcCCCcchHHHHHHHhccCCCceeee
Q psy16206 40 PIVQHVENYDSLHTAKLMCNATSE-GIAAIFGPQSIENRNIIESMCQMFDIPHVEA 94 (821)
Q Consensus 40 ~~~~D~~~~~~~~a~~~a~~li~~-~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~ 94 (821)
+.+.|+=|+-...-..++.+|..+ .+..|+|...|+.+.-+..+|...+.|..-.
T Consensus 186 ~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~I 241 (297)
T 3dnf_A 186 VKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHI 241 (297)
T ss_dssp EEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEe
Confidence 346785554455556667777777 8999999999999999999999998875433
No 330
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=23.25 E-value=2.5e+02 Score=26.18 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCCCEEEEEEec------CCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCC
Q psy16206 121 SKGISVIINDMDWDTFTIIYET------HDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSE 194 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~ 194 (821)
...+.+++....-+++++|-.. +++...++++++..+ ..+....+.. .+..+..+.|+ ++
T Consensus 15 ~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG----------~~v~~~~i~~--~~~~~~~~~l~--~a 80 (206)
T 3l4e_A 15 VPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLG----------LLVEELDIAT--ESLGEITTKLR--KN 80 (206)
T ss_dssp HHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTT----------CEEEECCTTT--SCHHHHHHHHH--HS
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcC----------CeEEEEEecC--CChHHHHHHHH--hC
Confidence 4455566655556999988521 125677778888776 3443332222 34445555665 57
Q ss_pred cEEEEeCChhHHHHHHHHHHHcccc
Q psy16206 195 SHILLDCSMDKTVTILKQAKEVHLM 219 (821)
Q Consensus 195 ~~ivl~~~~~~~~~~l~~a~~~g~~ 219 (821)
+.|++.+ .+...+++.+++.|+.
T Consensus 81 d~I~l~G--G~~~~l~~~L~~~gl~ 103 (206)
T 3l4e_A 81 DFIYVTG--GNTFFLLQELKRTGAD 103 (206)
T ss_dssp SEEEECC--SCHHHHHHHHHHHTHH
T ss_pred CEEEECC--CCHHHHHHHHHHCChH
Confidence 7888866 3334566666666653
No 331
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=23.15 E-value=1.3e+02 Score=30.07 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=46.6
Q ss_pred eHHHHHHHHHHHc-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhhhcceeecccceeeceEE
Q psy16206 440 YSVDLIKMIANEL-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518 (821)
Q Consensus 440 ~~~dll~~ia~~l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R~~~~~fS~p~~~~~~~l 518 (821)
+-..++..+.++. ++++++.. ++...+++.|.+|++|+++..... .....+. +.|+.....++
T Consensus 107 ~l~~~l~~f~~~~P~v~i~l~~-------------~~~~~~~~~l~~g~~Dlai~~~~~--~~~~~l~-~~~L~~~~~~~ 170 (324)
T 1al3_A 107 ALPGVIKGFIERYPRVSLHMHQ-------------GSPTQIAEAVSKGNADFAIATEAL--HLYDDLV-MLPCYHWNRSI 170 (324)
T ss_dssp TSHHHHHHHHHHCTEEEEEEEE-------------CCHHHHHHHHHTTCCSEEEESSCC--CTTSCEE-EEEEEEECEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEE-------------CCHHHHHHHHHCCCceEEEEecCC--CCCCCee-EEEecCCceEE
Confidence 3467888887775 45666653 245789999999999999763221 1112222 35778888888
Q ss_pred EEEcCCC
Q psy16206 519 LYRKPAK 525 (821)
Q Consensus 519 ~~~~~~~ 525 (821)
+++++.+
T Consensus 171 v~~~~~p 177 (324)
T 1al3_A 171 VVTPEHP 177 (324)
T ss_dssp EECTTST
T ss_pred EEcCCCc
Confidence 8887654
No 332
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=22.99 E-value=42 Score=29.71 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=31.9
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLT 785 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt 785 (821)
...|.+..+|+++..|.++++.+.+...+++++.+.
T Consensus 71 d~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 106 (148)
T 3vou_A 71 NFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106 (148)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999886543
No 333
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.69 E-value=2.7e+02 Score=22.56 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=41.9
Q ss_pred EEEEEEecCC-chhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCC--hhHHHHHHH
Q psy16206 135 TFTIIYETHD-NLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCS--MDKTVTILK 211 (821)
Q Consensus 135 ~v~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~--~~~~~~~l~ 211 (821)
+|.++ +|+. ....++..++..+ ..+. . ..+....++.+++..+++|++... ..+...+++
T Consensus 4 ~ILiv-dd~~~~~~~l~~~l~~~g----------~~v~--~----~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~ 66 (122)
T 3gl9_A 4 KVLLV-DDSAVLRKIVSFNLKKEG----------YEVI--E----AENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLK 66 (122)
T ss_dssp EEEEE-CSCHHHHHHHHHHHHHTT----------CEEE--E----ESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHH
T ss_pred eEEEE-eCCHHHHHHHHHHHHHCC----------cEEE--E----eCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHH
Confidence 44333 4443 4556666776654 3332 2 245667888888889999998755 345777888
Q ss_pred HHHHcc
Q psy16206 212 QAKEVH 217 (821)
Q Consensus 212 ~a~~~g 217 (821)
+.++..
T Consensus 67 ~l~~~~ 72 (122)
T 3gl9_A 67 KLQEKE 72 (122)
T ss_dssp HHHTST
T ss_pred HHHhcc
Confidence 887654
No 334
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=22.69 E-value=3.5e+02 Score=29.24 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHH-hhcCeEEEEcCCCc-chHHHHHHHhccCCC
Q psy16206 12 EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNA-TSEGIAAIFGPQSI-ENRNIIESMCQMFDI 89 (821)
Q Consensus 12 ~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~l-i~~~V~aiiGp~~s-~~~~~v~~i~~~~~i 89 (821)
++++.-.+--++.+|+++. ++ .++.. .- --.++..+.+.+.++ -.++|++||-..++ +.+..+.+.+..+++
T Consensus 25 ~~v~~~~~~~~~~l~~~~~--l~-~~vv~--~g-~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a~~~i~~l~~l~~ 98 (500)
T 4f2d_A 25 RQVTQHAEHVVNALNTEAK--LP-CKLVL--KP-LGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNK 98 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTC--CS-SEEEE--CC-CBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCTHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhccccC--CC-eEEEe--cC-cCCCHHHHHHHHHHhccccCCcEEEEeCCcCccHHHHHHHHHhcCC
Confidence 4444445566788998864 33 23222 22 113455555555444 34499999987776 666778888999999
Q ss_pred ceeeeccC
Q psy16206 90 PHVEAFWD 97 (821)
Q Consensus 90 P~is~~~~ 97 (821)
|++-++..
T Consensus 99 PvL~~~~q 106 (500)
T 4f2d_A 99 PLLQFHTQ 106 (500)
T ss_dssp CEEEEECC
T ss_pred CEEEEeCC
Confidence 99988643
No 335
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=22.59 E-value=1.1e+02 Score=31.66 Aligned_cols=93 Identities=6% Similarity=-0.026 Sum_probs=52.5
Q ss_pred ccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEE-cCCC-CCChHHH
Q psy16206 108 VHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQ-LPPD-TDDYRPL 185 (821)
Q Consensus 108 ~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~-~~d~~~~ 185 (821)
|+-+...+... ..+.+.++.+|.+++.|+++..-.....+++.+... ..|..+.... .+.. .+++...
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~~~~~~v~~~L~-------~~g~~~~~~~~~~~~~~~~v~~~ 81 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYELFGETIEKSIK-------SSNIEIEAVETVKNIDFDEIGTN 81 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHHHHHHHHHHHHH-------TTTCEEEEEEEECCCBHHHHHHH
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHHHHHHHHHHHHH-------HcCCeEEEEecCCCCCHHHHHHH
Confidence 44455555432 335677778888999999987643233344444333 3345554333 3322 3334555
Q ss_pred HHHhhcCCCcEEEEeCCh--hHHHHHHH
Q psy16206 186 LKEIKNSSESHILLDCSM--DKTVTILK 211 (821)
Q Consensus 186 l~~lk~~~~~~ivl~~~~--~~~~~~l~ 211 (821)
+.+++.++|.||-.+.+ -++..++.
T Consensus 82 -~~~~~~~~d~IIavGGGsv~D~aK~vA 108 (354)
T 3ce9_A 82 -AFKIPAEVDALIGIGGGKAIDAVKYMA 108 (354)
T ss_dssp -HTTSCTTCCEEEEEESHHHHHHHHHHH
T ss_pred -HHhhhcCCCEEEEECChHHHHHHHHHH
Confidence 66777788999877665 33444443
No 336
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=22.50 E-value=6.1e+02 Score=26.45 Aligned_cols=86 Identities=9% Similarity=0.083 Sum_probs=51.1
Q ss_pred CCEEEEEEecCCch-h-HHHHHHHhcCCCCCcCCCCCCeEEEEE-cCCCCCChHHHHHHhhcCCCcEEEEeCCh------
Q psy16206 133 WDTFTIIYETHDNL-V-YLQQVLENAHDDDKEIRPGRPSVTIRQ-LPPDTDDYRPLLKEIKNSSESHILLDCSM------ 203 (821)
Q Consensus 133 w~~v~ii~~~~~~~-~-~~~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~lk~~~~~~ivl~~~~------ 203 (821)
-++|.|+|....|. . .++.+.+... ..|..+.... .+....+....+..+. .++.|++.++.
T Consensus 265 ~~~v~I~Y~S~yGnTe~mA~~ia~gl~-------~~Gv~~~~~~~~d~~~~~~s~i~~~i~--~~~~ivlGspT~~~~~~ 335 (410)
T 4dik_A 265 KGKVTVIYDSMYGFVENVMKKAIDSLK-------EKGFTPVVYKFSDEERPAISEILKDIP--DSEALIFGVSTYEAEIH 335 (410)
T ss_dssp TTEEEEEEECSSSHHHHHHHHHHHHHH-------HTTCEEEEEEECSSCCCCHHHHHHHST--TCSEEEEEECCTTSSSC
T ss_pred ccceeeEEecccChHHHHHHHHHHHHH-------hcCCceEEEEeccCCCCCHHHHHHHHH--hCCeEEEEeCCcCCcCC
Confidence 35899999877642 2 2333433333 3456655443 4444678888887776 56677775553
Q ss_pred hHHHHHHHHHHHccccCcceEEEE
Q psy16206 204 DKTVTILKQAKEVHLMGDYQNYIL 227 (821)
Q Consensus 204 ~~~~~~l~~a~~~g~~~~~~~~i~ 227 (821)
+....++.........++....+.
T Consensus 336 p~~~~~l~~l~~~~~~~K~~~~FG 359 (410)
T 4dik_A 336 PLMRFTLLEIIDKANYEKPVLVFG 359 (410)
T ss_dssp HHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred HHHHHHHHHHHhcccCCCEEEEEE
Confidence 445567777777776655444343
No 337
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=22.19 E-value=1.5e+02 Score=28.79 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchh--hh----cceeec-ccceeec
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSE--RR----AAVDFT-MPFMTLG 515 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~--R~----~~~~fS-~p~~~~~ 515 (821)
.+++.+.+..+..++++.++ +...++.+|.+|++|.++.....-.. +. ..+... .|+....
T Consensus 143 ~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (287)
T 2vha_A 143 VLLNKLNEEQKMNMRIISAK------------DHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEA 210 (287)
T ss_dssp HHHHHHHHHTTCCCEEEEES------------SHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEE
T ss_pred HHHHHHhhccCCCceEEEcC------------CHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCc
Confidence 45566666555666666665 67889999999999998764332211 11 122222 3455566
Q ss_pred eEEEEEcC
Q psy16206 516 ISILYRKP 523 (821)
Q Consensus 516 ~~l~~~~~ 523 (821)
..+.++++
T Consensus 211 ~~~~~~k~ 218 (287)
T 2vha_A 211 YGCMLRKD 218 (287)
T ss_dssp EEEEECTT
T ss_pred eEEEEeCC
Confidence 67777654
No 338
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=22.10 E-value=3.7e+02 Score=25.88 Aligned_cols=116 Identities=9% Similarity=-0.081 Sum_probs=63.8
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~ 75 (821)
+||.+....+ ..-..|++-|+++.+-. ... ..+ .. ...+...+.+.+.+++.. ++.||+.....
T Consensus 141 ~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~----~~~---~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~- 210 (296)
T 3brq_A 141 EIAFLTGSMDSPTSIERLAGYKDALAQHGIA----LNE---KLI-AN-GKWTPASGAEGVEMLLERGAKFSALVASNDD- 210 (296)
T ss_dssp SEEEECCCTTCHHHHHHHHHHHHHHHTTTCC----CCG---GGE-EC-CCSSHHHHHHHHHHHHTC--CCSEEEESSHH-
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHHcCCC----CCh---hhE-Ee-CCCChhHHHHHHHHHHhCCCCCCEEEECChH-
Confidence 5777766533 33456777776653211 111 111 22 224666677788888875 78999976543
Q ss_pred hHHHHHHHhccCC--Cc----eeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 76 NRNIIESMCQMFD--IP----HVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 76 ~~~~v~~i~~~~~--iP----~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
.+..+...+.+.+ +| ++++...+.. ....|-+..+..+...+++..++++..
T Consensus 211 ~a~g~~~al~~~g~~vP~di~vvg~d~~~~~---~~~~p~lttv~~~~~~~g~~a~~~l~~ 268 (296)
T 3brq_A 211 MAIGAMKALHERGVAVPEQVSVIGFDDIAIA---PYTVPALSSVKIPVTEMIQEIIGRLIF 268 (296)
T ss_dssp HHHHHHHHHHHHTCCTTTTCEEEEESCCTTG---GGSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCceEEEeecCchhh---hccCCCceeeeCCHHHHHHHHHHHHHH
Confidence 3344444454433 44 6776544332 111233455666767777777776643
No 339
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=22.09 E-value=95 Score=29.37 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchh--hhc---ceee--cccceee
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSE--RRA---AVDF--TMPFMTL 514 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~--R~~---~~~f--S~p~~~~ 514 (821)
-++++.+.++.|+++++.. ++-..++..++ +.+|+++..-....+ .++ .++. ..++...
T Consensus 16 ~~~~~~F~~~~gi~V~~~~-------------~~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF-------------GPQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPLYFR 81 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE-------------SSHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEE
T ss_pred HHHHHHHHHHhCceEEEEe-------------CChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCcccccccccC
Confidence 4688888888899998853 24467888888 899999765422211 122 2332 2467788
Q ss_pred ceEEEEEcCCC
Q psy16206 515 GISILYRKPAK 525 (821)
Q Consensus 515 ~~~l~~~~~~~ 525 (821)
..+++++++++
T Consensus 82 ~~~l~~~~~~~ 92 (237)
T 2hxw_A 82 EAIILTQKGNP 92 (237)
T ss_dssp EEEEEESTTCT
T ss_pred ceEEEEeCCCC
Confidence 88888887643
No 340
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=22.08 E-value=3.1e+02 Score=27.18 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=56.7
Q ss_pred CeEEEEcCCCcchHHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecC-----hhhHHHHHHHHHHhCC------
Q psy16206 64 GIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPE-----SHLISKGISVIINDMD------ 132 (821)
Q Consensus 64 ~V~aiiGp~~s~~~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~-----~~~~~~al~~~~~~~~------ 132 (821)
-+.-+.||....-..+|+.++...++=++..+... +.....|+.|+.-. ....-+++..+...++
T Consensus 8 ~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~----d~~~g~Ffmr~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~ 83 (287)
T 3nrb_A 8 YVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFN----DEDSSKFFMRVSVEIPVAGVNDFNSAFGKVVEKYNAEWWFR 83 (287)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE----ETTTTEEEEEEEEECCC---CHHHHHHHHHHGGGTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeee----cCCCCeEEEEEEEEcCCCCHHHHHHHHHHHHHHcCCeeEee
Confidence 36678899999999999999999998887664421 12345677776321 2245566666666654
Q ss_pred ----CCEEEEEEecCCchhHHHHHHHh
Q psy16206 133 ----WDTFTIIYETHDNLVYLQQVLEN 155 (821)
Q Consensus 133 ----w~~v~ii~~~~~~~~~~~~~~~~ 155 (821)
-+|++|+.+... ..++.++..
T Consensus 84 ~~~~~~ri~vl~Sg~g--~nl~~ll~~ 108 (287)
T 3nrb_A 84 PRTDRKKVVIMVSKFD--HCLGDLLYR 108 (287)
T ss_dssp ETTCCCEEEEEECSCC--HHHHHHHHH
T ss_pred ccCCCcEEEEEEeCCC--cCHHHHHHH
Confidence 257888887653 455555443
No 341
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.88 E-value=3e+02 Score=22.76 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=45.1
Q ss_pred CEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCC--hhHHHHHHH
Q psy16206 134 DTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCS--MDKTVTILK 211 (821)
Q Consensus 134 ~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~--~~~~~~~l~ 211 (821)
.+|.|+-++......++..++..+ ..+. . ..+....+..+++..+++|++... ..+...+++
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g----------~~v~--~----~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~ 70 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGG----------FDSD--M----VHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIR 70 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTT----------CEEE--E----ECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCC----------CeEE--E----ECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHH
Confidence 455555333335677777777765 3332 2 245677888888889999999765 355778888
Q ss_pred HHHHc
Q psy16206 212 QAKEV 216 (821)
Q Consensus 212 ~a~~~ 216 (821)
+.++.
T Consensus 71 ~l~~~ 75 (140)
T 3grc_A 71 ALRRD 75 (140)
T ss_dssp HHHTS
T ss_pred HHHhC
Confidence 88874
No 342
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.76 E-value=1.1e+02 Score=29.92 Aligned_cols=81 Identities=7% Similarity=0.006 Sum_probs=45.0
Q ss_pred CCCEEEEEEecCC--chh-HHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCCh-hHHH
Q psy16206 132 DWDTFTIIYETHD--NLV-YLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCSM-DKTV 207 (821)
Q Consensus 132 ~w~~v~ii~~~~~--~~~-~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~~-~~~~ 207 (821)
.-++++++..+.. +.. .++.+.+.+. ..|..+.......+.......++.+.+.+++.||+.... ....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~-------~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~ 79 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAK-------ANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIG 79 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHH-------HTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHH-------HcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH
Confidence 3467888876543 222 2222222232 335666554433323334567777778899998886543 3344
Q ss_pred HHHHHHHHcccc
Q psy16206 208 TILKQAKEVHLM 219 (821)
Q Consensus 208 ~~l~~a~~~g~~ 219 (821)
..++++.+.|++
T Consensus 80 ~~~~~~~~~~iP 91 (293)
T 3l6u_A 80 SAIEEAKKAGIP 91 (293)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 677888777763
No 343
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=21.67 E-value=69 Score=32.25 Aligned_cols=39 Identities=5% Similarity=-0.001 Sum_probs=35.8
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy16206 750 TFVNEAVSTRLVAGMWWFFTLIMISSYTANLAAFLTNTR 788 (821)
Q Consensus 750 ~~~~~~~~~r~~~~~w~~~~~i~~~~yt~~l~~~lt~~~ 788 (821)
.+.|.+..+|+++..+.++.+++.+..++.+.+.++.++
T Consensus 101 Di~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 101 KLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 578999999999999999999999999999999997765
No 344
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=21.66 E-value=83 Score=32.69 Aligned_cols=93 Identities=4% Similarity=-0.019 Sum_probs=52.8
Q ss_pred ccEEEEecChhhHHHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCC--CCChHHH
Q psy16206 108 VHGVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD--TDDYRPL 185 (821)
Q Consensus 108 ~~~~r~~p~~~~~~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~d~~~~ 185 (821)
|+-+...+... ..+.++++.+| +++.||++..-.....+++.+.+. ..|..+.+..++.+ .+++...
T Consensus 10 p~~i~~G~g~~---~~l~~~l~~~g-~~~livtd~~~~~~~~~~v~~~L~-------~~g~~~~~~~~~ge~~~~~v~~~ 78 (370)
T 1jq5_A 10 PAKYVQGKNVI---TKIANYLEGIG-NKTVVIADEIVWKIAGHTIVNELK-------KGNIAAEEVVFSGEASRNEVERI 78 (370)
T ss_dssp CSEEEEETTGG---GGHHHHHTTTC-SEEEEEECHHHHHHTHHHHHHHHH-------TTTCEEEEEECCSSCBHHHHHHH
T ss_pred CCeEEECcCHH---HHHHHHHHHcC-CeEEEEEChHHHHHHHHHHHHHHH-------HcCCeEEEEeeCCCCCHHHHHHH
Confidence 44445555432 33566777788 999999976532222333333332 22455543334332 2346667
Q ss_pred HHHhhcCCCcEEEEeCCh--hHHHHHHH
Q psy16206 186 LKEIKNSSESHILLDCSM--DKTVTILK 211 (821)
Q Consensus 186 l~~lk~~~~~~ivl~~~~--~~~~~~l~ 211 (821)
++.+++.++|.||-.+.+ -++..++.
T Consensus 79 ~~~~~~~~~d~IIavGGGsv~D~aK~iA 106 (370)
T 1jq5_A 79 ANIARKAEAAIVIGVGGGKTLDTAKAVA 106 (370)
T ss_dssp HHHHHHTTCSEEEEEESHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEeCChHHHHHHHHHH
Confidence 777888899999977665 33444443
No 345
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=21.48 E-value=90 Score=29.67 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEec
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICD 494 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~ 494 (821)
.++++.+.+..|++++++.++ +...++.+|.+|++|.++.+
T Consensus 160 ~~~~~~~~~~~g~~~~~~~~~------------~~~~~~~~l~~g~vDa~~~~ 200 (259)
T 2v25_A 160 KKAIGEAAKKIGIDVKFSEFP------------DYPSIKAALDAKRVDAFSVD 200 (259)
T ss_dssp HHHHHHHHHHTTCCCEEEEES------------SHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHhcCCceeEEEeC------------CHHHHHHHHHcCCCcEEEec
Confidence 356666777778877776654 67889999999999998764
No 346
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=21.17 E-value=2.4e+02 Score=27.39 Aligned_cols=116 Identities=9% Similarity=-0.054 Sum_probs=65.6
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~ 75 (821)
+||.+....+ ..-..|++-|+++.+-... . ..+. . ...+...+.+.+.+++.. .+.||+.....
T Consensus 129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~----~---~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~- 198 (289)
T 3g85_A 129 SAAAILTESLNDAMDNRNKGFIETCHKNGIKIS----E---NHII-A-AENSIHGGVDAAKKLMKLKNTPKALFCNSDS- 198 (289)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCC----G---GGEE-E-CCSSHHHHHHHHHHHTTSSSCCSEEEESSHH-
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHcCCCCC----h---hhee-c-cCCCHHHHHHHHHHHHcCCCCCcEEEEcCCH-
Confidence 5777766544 3445778777776432211 1 1122 2 225777888889999886 69999976543
Q ss_pred hHHHHHHHhccCC--Cc----eeeec--cCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 76 NRNIIESMCQMFD--IP----HVEAF--WDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 76 ~~~~v~~i~~~~~--iP----~is~~--~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
.+..+...+.+.+ +| ++++. ..+.. ....|-+-.+..+...+++..++++..
T Consensus 199 ~a~g~~~al~~~g~~vP~di~vig~d~~~~~~~---~~~~p~lttv~~~~~~~g~~a~~~l~~ 258 (289)
T 3g85_A 199 IALGVISVLNKRQISIPDDIEIVAIGMNDREYT---EFSTPPVTIVDIPIEEMAGTCISLVEK 258 (289)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEEECSCHHHH---HSSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEeCCCCcchh---hccCCCCeEEcCCHHHHHHHHHHHHHH
Confidence 3444445555544 44 66665 22211 112233445666667777777776643
No 347
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=21.10 E-value=5.6e+02 Score=24.63 Aligned_cols=113 Identities=11% Similarity=-0.036 Sum_probs=62.5
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~ 75 (821)
+||.+....+ ..-..|++-|+++ . + + +...+. . ...+...+.+.+.+++.+ .+.||+......
T Consensus 140 ~I~~i~~~~~~~~~~~R~~Gf~~~l~~---~-g--~---~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~ 208 (293)
T 2iks_A 140 TVLYLGALPELSVSFLREQGFRTAWKD---D-P--R---EVHFLY-A-NSYEREAAAQLFEKWLETHPMPQALFTTSFAL 208 (293)
T ss_dssp SEEEEEECTTSHHHHHHHHHHHHHHTT---C-C--C---CEEEEE-E-SSSCHHHHHHHHHHHTTTSCCCSEEEESSHHH
T ss_pred EEEEEecCcccccHHHHHHHHHHHHHH---c-C--C---CccEEE-c-CCCChhhHHHHHHHHHhcCCCCCEEEECChHH
Confidence 5777765433 3345666666643 2 2 1 223332 2 225677778888898876 589999765443
Q ss_pred hHHHHHHHhcc--CCCc----eeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHH
Q psy16206 76 NRNIIESMCQM--FDIP----HVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIN 129 (821)
Q Consensus 76 ~~~~v~~i~~~--~~iP----~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~ 129 (821)
+..+...+.+ ..|| ++++...+.. ....|-+..+..+...+++..++++.
T Consensus 209 -a~g~~~al~~~g~~vP~di~vvg~d~~~~~---~~~~p~lttv~~~~~~~g~~a~~~l~ 264 (293)
T 2iks_A 209 -LQGVMDVTLRRDGKLPSDLAIATFGDNELL---DFLQCPVLAVAQRHRDVAERVLEIVL 264 (293)
T ss_dssp -HHHHHHHHHHHHSSCCSSCEEEEESCCGGG---GGCSSEEEEEECCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCCCCceEEEEECCHHHH---hhcCCCeeEEeCCHHHHHHHHHHHHH
Confidence 3333444433 3345 6666544321 11234455566677777777666653
No 348
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=21.03 E-value=2.6e+02 Score=27.26 Aligned_cols=115 Identities=10% Similarity=-0.033 Sum_probs=62.2
Q ss_pred cEEEEeCCCc----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCcc
Q psy16206 2 KIVGIFGPNE----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSIE 75 (821)
Q Consensus 2 ~IG~i~~~~~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s~ 75 (821)
+|+.+....+ ..-..|++-|+++. + .++. ... ...+...+.+.+.+++.+ .+.||+......
T Consensus 132 ~i~~i~g~~~~~~~~~R~~Gf~~~l~~~----g-----~~~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~ 199 (297)
T 3rot_A 132 RALVLNPQPGHIGLEKRAYGIKTILQDK----G-----IFFE--ELD-VGTDPNQVQSRVKSYFKIHPETNIIFCLTSQA 199 (297)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHT----T-----CEEE--EEE-CCSCHHHHHHHHHHHHHHCTTCCEEEESSHHH
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHHHhc----C-----CeEE--Eee-cCCChHHHHHHHHHHHHhCCCCCEEEEcCCcc
Confidence 5677765444 34557788777764 2 1232 222 224677777888887765 789999876543
Q ss_pred hHHHHHHHhcc-------CCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHH
Q psy16206 76 NRNIIESMCQM-------FDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIN 129 (821)
Q Consensus 76 ~~~~v~~i~~~-------~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~ 129 (821)
+..++ ..+.. .++.++++..++.....-...+.+.-+..+...++...++++.
T Consensus 200 A~g~~-~al~~~g~~vP~~dv~vig~D~~~~~~~~i~~~~~lttv~~~~~~~g~~av~~l~ 259 (297)
T 3rot_A 200 LDPLG-QMLLHPDRYDFNYQPQVYSFDKTPNTVSLIHKKLVNYVMDQQPFLMGYLSITQLV 259 (297)
T ss_dssp HHHHH-HHHHSHHHHTCCCCCEEEEECCCHHHHHHHHTTSCCEEECCCHHHHHHHHHHHHH
T ss_pred hHHHH-HHHHhcCCccCCCceEEEEeCCCHHHHHHHHcCCceEEEecChHHHHHHHHHHHH
Confidence 33333 33333 2566777654433100001123344455555666666666553
No 349
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=21.01 E-value=4.9e+02 Score=25.09 Aligned_cols=116 Identities=14% Similarity=0.003 Sum_probs=65.7
Q ss_pred cEEEEeCCC-c----hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhc--CeEEEEcCCCc
Q psy16206 2 KIVGIFGPN-E----EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSE--GIAAIFGPQSI 74 (821)
Q Consensus 2 ~IG~i~~~~-~----~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~--~V~aiiGp~~s 74 (821)
+||.+.... + ..-..|++-|+++.+-. ... ..+ .. ...+...+.+.+.+++.+ .+.||+.....
T Consensus 135 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~----~~~---~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 205 (289)
T 2fep_A 135 DIAFVSGPMAEPINRSKKLQGYKRALEEANLP----FNE---QFV-AE-GDYTYDSGLEALQHLMSLDKKPTAILSATDE 205 (289)
T ss_dssp SEEEEESCTTSHHHHTTHHHHHHHHHHHTTCC----CCG---GGE-EE-CCSCHHHHHHHHHHHTTSSSCCSEEEESSHH
T ss_pred eEEEEeCCccccccHHHHHHHHHHHHHHcCCC----CCh---heE-ee-CCCCHHHHHHHHHHHHcCCCCCCEEEECCHH
Confidence 578887665 3 34467888887764311 111 111 22 225677778888898876 68999976544
Q ss_pred chHHHHHHHhccCC--Cc----eeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 75 ENRNIIESMCQMFD--IP----HVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 75 ~~~~~v~~i~~~~~--iP----~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
.+..+...+.+.+ +| ++++...+.. ....|.+..+..+...+++..++++..
T Consensus 206 -~A~g~~~al~~~G~~vP~di~vvg~D~~~~~---~~~~p~lttv~~~~~~~g~~a~~~l~~ 263 (289)
T 2fep_A 206 -MALGIIHAAQDQGLSIPEDLDIIGFDNTRLS---LMVRPQLSTVVQPTYDIGAVAMRLLTK 263 (289)
T ss_dssp -HHHHHHHHHHHTTCCTTTTCEEEEEECCGGG---TSSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCCCCCeEEEEECChHHH---hhcCCceeEEeCCHHHHHHHHHHHHHH
Confidence 3444445554444 34 6666544321 112234455666666777776666543
No 350
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=20.76 E-value=95 Score=28.66 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCCCEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhc---CCCcEE
Q psy16206 121 SKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKN---SSESHI 197 (821)
Q Consensus 121 ~~al~~~~~~~~w~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~---~~~~~i 197 (821)
+..+..+.+.++-+++.|+-++-..-...+.+++.+. +.|..+.+... ...++.+++ .+.+++
T Consensus 36 GQVat~W~k~~~~~~IiVvnD~vA~D~~~k~~lkmA~-------P~gvk~~i~sv-------e~ai~~~~~~~~~~~~v~ 101 (187)
T 3lfj_A 36 GQVMTRWMKGFPEASIVIIDDELAVDEFMKNIYTMAA-------PPGVKVKVFGV-------DAALKEWSQKTSVEEKVF 101 (187)
T ss_dssp TTHHHHHHTTCTTCEEEEECHHHHHCHHHHHHHHHTS-------CTTCCEEEECH-------HHHHHHHHSBCSSCEEEE
T ss_pred hhhhheeccccCCCEEEEECccccCCHHHHHHHHHhc-------cCCCeEEEEEH-------HHHHHHHhCCccCCceEE
Confidence 5678889999999998887554444455566777776 66777765544 234444544 356788
Q ss_pred EEeCChhHHHHHHHH
Q psy16206 198 LLDCSMDKTVTILKQ 212 (821)
Q Consensus 198 vl~~~~~~~~~~l~~ 212 (821)
++.-.+.++..+++.
T Consensus 102 il~k~p~d~~~lve~ 116 (187)
T 3lfj_A 102 LLFKNIDTCKRVMDG 116 (187)
T ss_dssp EEESSHHHHHHHHHT
T ss_pred EEECCHHHHHHHHHc
Confidence 888888888877653
No 351
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=20.28 E-value=1.5e+02 Score=28.38 Aligned_cols=69 Identities=12% Similarity=0.039 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEeccccchhh-h---cceeecc---cceeec
Q psy16206 443 DLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSER-R---AAVDFTM---PFMTLG 515 (821)
Q Consensus 443 dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~R-~---~~~~fS~---p~~~~~ 515 (821)
.++.+..- -|.+++++.. +.++++.+|.+|++|.++-...-...+ . ....+.. +...+.
T Consensus 125 ~~lt~~~~-~g~~Ve~ve~-------------~y~~~i~~L~~G~IDA~Iwn~d~~~a~~~~~l~~~~l~~~~~~~~~~e 190 (231)
T 2ozz_A 125 KIMTDVFF-GDSDVERVDL-------------SYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATE 190 (231)
T ss_dssp HHHHHHHH-TTSCCEEEEC-------------CHHHHHHHHHHTSCCEEEEEC-CHHHHHHTTEEEEECCSCHHHHHTTC
T ss_pred HHHHhhhc-CCCeEEEEEC-------------CHHHHHHHHHcCCccEEEEcCcchhhhcCCCcceeccccccccccCCc
Confidence 44455444 7888887743 578999999999999998633222222 1 2344444 334566
Q ss_pred eEEEEEcCCC
Q psy16206 516 ISILYRKPAK 525 (821)
Q Consensus 516 ~~l~~~~~~~ 525 (821)
.++++++++.
T Consensus 191 avI~v~k~n~ 200 (231)
T 2ozz_A 191 AVVLTRVDDY 200 (231)
T ss_dssp EEEEEETTCH
T ss_pred eEEEEECCCH
Confidence 6777888754
No 352
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=20.24 E-value=3.9e+02 Score=26.12 Aligned_cols=109 Identities=10% Similarity=-0.031 Sum_probs=62.1
Q ss_pred cEEEEeCCCc---hHHHHHHHHHHHHHhcCCCCCCCceEEEEEEEEecCCChhHHHHHHHHHhhcCeEEEEcCCCcch--
Q psy16206 2 KIVGIFGPNE---EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIEN-- 76 (821)
Q Consensus 2 ~IG~i~~~~~---~~~~~a~~lAv~~iN~~~~~ll~~~~l~~~~~D~~~~~~~~a~~~a~~li~~~V~aiiGp~~s~~-- 76 (821)
|||.+...+. .....+++-|+++. | .++..... .+.....+++.+|+ .++.||+-+.....
T Consensus 142 ~I~~i~~~~~~~~~~r~~g~~~al~~~----g-----i~~~~~~~----~~~~~~~~~~~~l~-~~~dai~~~~D~~a~g 207 (302)
T 2qh8_A 142 SIGVVYNPGEANAVSLMELLKLSAAKH----G-----IKLVEATA----LKSADVQSATQAIA-EKSDVIYALIDNTVAS 207 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHT----T-----CEEEEEEC----SSGGGHHHHHHHHG-GGCSEEEECSCHHHHT
T ss_pred EEEEEecCCCcchHHHHHHHHHHHHHc----C-----CEEEEEec----CChHHHHHHHHHHh-ccCCEEEECCcHhHHH
Confidence 6888876643 33345666666542 2 23322211 22344556666666 47888887765422
Q ss_pred -HHHHHHHhccCCCceeeeccCCCCCCCCCCCccEEEEecChhhHHHHHHHHHHh
Q psy16206 77 -RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIIND 130 (821)
Q Consensus 77 -~~~v~~i~~~~~iP~is~~~~~~~~~~~~~~~~~~r~~p~~~~~~~al~~~~~~ 130 (821)
..++...+...++|++++..... . .+-+.....+...+++..++++.+
T Consensus 208 ~~~~l~~~~~~~~i~vig~d~~~~--~----~~~Lttv~~~~~~~G~~Aa~~l~~ 256 (302)
T 2qh8_A 208 AIEGMIVAANQAKTPVFGAATSYV--E----RGAIASLGFDYYQIGVQTADYVAA 256 (302)
T ss_dssp THHHHHHHHHHTTCCEEESSHHHH--H----TTCSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEECCHHHH--h----CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 33344555568899998742221 1 133455667777888877776644
No 353
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=20.14 E-value=1.2e+02 Score=28.64 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=33.2
Q ss_pred HHHHHHHHHH-c-CCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEecc
Q psy16206 442 VDLIKMIANE-L-NFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDL 495 (821)
Q Consensus 442 ~dll~~ia~~-l-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 495 (821)
.++++.-.++ + |+++++..+ +|......+.+|+.|+.+.+.
T Consensus 115 a~~i~~~l~~~i~GI~v~i~~~-------------~~~~~~~~~~~g~~d~~~~~w 157 (229)
T 3o6p_A 115 VEFVQGSIQDALDGVKVTVSPV-------------PFSVRLDRSNKGDFDAVIGGW 157 (229)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEE-------------CHHHHHHHHHHTCCSEEEEEE
T ss_pred HHHHHHHHHHhCCCcEEEEEec-------------CHHHHHHHhhcCCceEEEecc
Confidence 5677777777 9 999999976 488888889999999987543
No 354
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=20.06 E-value=1.1e+02 Score=29.57 Aligned_cols=41 Identities=12% Similarity=-0.022 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEecc
Q psy16206 442 VDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDL 495 (821)
Q Consensus 442 ~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 495 (821)
.++++.-.+++|+++++..+ +|......+.+|+.|+++.+.
T Consensus 144 a~~iq~~l~~iGI~v~i~~~-------------~~~~~~~~~~~~~~d~~~~~w 184 (259)
T 3pam_A 144 ALAFQSNLSRLGIHAEIRTV-------------DDSQYQNRLGMFNYDMIIGKL 184 (259)
T ss_dssp HHHHHHHHHTTTCEEEEEEC-------------CHHHHHHHHHHTCCSEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEec-------------CHHHHHHHHhcCCeeEEEecc
Confidence 56667667779999999966 588888889999999987543
No 355
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=20.05 E-value=3.6e+02 Score=22.97 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=44.9
Q ss_pred CEEEEEEecCCchhHHHHHHHhcCCCCCcCCCCCCeEEEEEcCCCCCChHHHHHHhhcCCCcEEEEeCC--hhHHHHHHH
Q psy16206 134 DTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLLKEIKNSSESHILLDCS--MDKTVTILK 211 (821)
Q Consensus 134 ~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~lk~~~~~~ivl~~~--~~~~~~~l~ 211 (821)
.+|.|+-++......++..++..+ ..+. . ..+....+..+++..+++|++... ..+...+++
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g----------~~v~--~----~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~ 71 (154)
T 3gt7_A 8 GEILIVEDSPTQAEHLKHILEETG----------YQTE--H----VRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCR 71 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTT----------CEEE--E----ESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCC----------CEEE--E----eCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHH
Confidence 345444333335667777777664 3332 2 245677888888889999999865 345778888
Q ss_pred HHHHcc
Q psy16206 212 QAKEVH 217 (821)
Q Consensus 212 ~a~~~g 217 (821)
++++..
T Consensus 72 ~lr~~~ 77 (154)
T 3gt7_A 72 WLKGQP 77 (154)
T ss_dssp HHHHST
T ss_pred HHHhCC
Confidence 888754
No 356
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=20.01 E-value=1.2e+02 Score=31.11 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcchHHHHHHHcCCcceEEe
Q psy16206 441 SVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAIC 493 (821)
Q Consensus 441 ~~dll~~ia~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~Di~~~ 493 (821)
|-++...+.+..+.+++.+... +..+++.++.+|++|++..
T Consensus 20 C~~l~~~~~~~~~~~vecv~~~------------~~~~ci~aI~~g~AD~~~l 60 (334)
T 1h45_A 20 CFQWQRNMRRVRGPPVSCIKRD------------SPIQCIQAIAENRADAVTL 60 (334)
T ss_dssp HHHHHHHHHHTTCCCEEEEECS------------SHHHHHHHHHTTSCCBEEE
T ss_pred HHHHHHHHhhcCCCceEEEEcC------------CHHHHHHHHHcCCCCEEEe
Confidence 4455555544448889988754 7899999999999999864
Done!