RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16206
(821 letters)
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
(Rattus norvegicus), GluR2 [TaxId: 10116]}
Length = 260
Score = 122 bits (305), Expect = 1e-31
Identities = 91/269 (33%), Positives = 127/269 (47%), Gaps = 37/269 (13%)
Query: 405 NRTLTVTSKTFAKLRVLFQGEPYMMKNP------ETGELYGYSVDLIKMIANELNFTYKF 458
N+T+ VT+ + PY+M GY VDL IA F YK
Sbjct: 1 NKTVVVTTILES---------PYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKL 51
Query: 459 VLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISI 518
+ + YG + T WNG++GEL +AD+AI LTIT R +DF+ PFM+LGISI
Sbjct: 52 TIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISI 111
Query: 519 LYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVS 578
+ +K + + G + + S ++
Sbjct: 112 MIKKGTPIES----------AEDLSKQTEIAYGT----------LDSGSTKEFFRRSKIA 151
Query: 579 LYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKN-CDLMQVGG 637
++ +M + M S+ PSVFV++ EGV RV K KGKYA+ +EST EY ++ CD M+VGG
Sbjct: 152 VFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGG 211
Query: 638 LLDSKGYGIAMPT-SKFLAKFSFGFAKLR 665
LDSKGYGIA P S + KL
Sbjct: 212 NLDSKGYGIATPKGSSLGNAVNLAVLKLN 240
Score = 52.7 bits (125), Expect = 5e-08
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 671 EPYMMKNP------ETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
PY+M GY VDL IA F YK + + YG + T WNG
Sbjct: 12 SPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNG 71
Query: 725 LIGELQEQVDTFILFFIY 742
++GEL + +
Sbjct: 72 MVGELVYGKADIAIAPLT 89
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 401
Score = 107 bits (268), Expect = 1e-25
Identities = 53/388 (13%), Positives = 117/388 (30%), Gaps = 31/388 (7%)
Query: 12 EEVATAFEIAVRRINKD---FKALPPDIILEPIVQ--HVENYDSLHTAKLMCNATSEGIA 66
V A E A+R + + + LPP + + N + A
Sbjct: 25 TRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAKPD 84
Query: 67 AIFGPQSIENRNIIESMCQMFDIPHVE-AFWDPNKYFIPTNGVHGVNVYPESHLISKGIS 125
I GP + + +D+P + + H V P + + +
Sbjct: 85 LILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMML 144
Query: 126 VIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPL 185
+ W ++Y + + + +I D
Sbjct: 145 ALFRHHHWSRAALVYSDDK---LERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLED 201
Query: 186 LKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYIL-------SLTSYWINAHT 238
+ +SE +++ S D +I+ A + + S
Sbjct: 202 IVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGD 261
Query: 239 VDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYD 298
+ + Y+++ TV ++ P ++G ++ + V + +D
Sbjct: 262 KHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNME---DYVNMFVEGFHD 318
Query: 299 AVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGR 358
A+ L+ AL + S + G I + T +G+ G++++D+ R
Sbjct: 319 AILLYVLALHEVLRAGY-----------SKKDGGKIIQQTWNRTFEGIAGQVSIDANGDR 367
Query: 359 RNSFS-LEFVEYVSDQWKVLGTWNTAFG 385
FS + + + +V+G + G
Sbjct: 368 YGDFSVIAMTDVEAGTQEVIGDYFGKEG 395
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 425
Score = 102 bits (255), Expect = 9e-24
Identities = 49/392 (12%), Positives = 110/392 (28%), Gaps = 31/392 (7%)
Query: 12 EEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENY-----DSLHTAKLMCNATSEGIA 66
V A E+A+ R+ L P + ++ EN D+ + A
Sbjct: 21 ARVGPAVELALARVKAR-PDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPA 79
Query: 67 AIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISV 126
GP + + + + +P + A + P + ++
Sbjct: 80 VFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTA 139
Query: 127 IINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYRPLL 186
+ + W+ ++ + +V ++ D+ P L
Sbjct: 140 LHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKL 199
Query: 187 KEIKNSSESHILLDCSMDKTVTILKQAKEVHLMG-------------DYQNYILSLTSYW 233
I + S D ++ A L G ++ +
Sbjct: 200 LRAVRRKGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKP 259
Query: 234 INAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEA 293
+ + + + P NP + +++ + V I
Sbjct: 260 WERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKK-FNFTVEDGLKNIIP 318
Query: 294 ALMYDAVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLD 353
A +D + L+ A+ + + G I M + + G+TG + +D
Sbjct: 319 ASFHDGLLLYVQAVTE-----------TLAQGGTVTDGENITQRMWNRSFQGVTGYLKID 367
Query: 354 SQTGRRNSFSLEFVEYVSDQWKVLGTWNTAFG 385
R FSL ++ + ++V+ +N
Sbjct: 368 RNGDRDTDFSLWDMDPETGAFRVVLNYNGTSQ 399
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 289
Score = 97.0 bits (240), Expect = 9e-23
Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 29/245 (11%)
Query: 426 PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGT----LNPQTGKWNGLIG 481
P ++ YG+ +DL+ +A +NFTY+ L + +GT N +WNG++G
Sbjct: 49 PGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMG 108
Query: 482 ELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDV 541
EL +AD+ + LTI +ER ++F+ PF G++IL +K + L S
Sbjct: 109 ELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKF 168
Query: 542 WVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKE 601
M+ ME +S E
Sbjct: 169 IYATVKQSSVDIYF-------------------RRQVELSTMYRHME----KHNYESAAE 205
Query: 602 GVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGGLLDSKGYGIAMPT-SKFLAKFSFG 660
++ V K +AF +S +E+E + CDL+ G L G+GI M S + S
Sbjct: 206 AIQAVRDNKL-HAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLS 264
Query: 661 FAKLR 665
K
Sbjct: 265 ILKSH 269
Score = 44.7 bits (104), Expect = 2e-05
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 672 PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGT----LNPQTGKWNGLIG 727
P ++ YG+ +DL+ +A +NFTY+ L + +GT N +WNG++G
Sbjct: 49 PGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMG 108
Query: 728 ELQEQ 732
EL
Sbjct: 109 ELLSG 113
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
10116]}
Length = 277
Score = 83.2 bits (204), Expect = 4e-18
Identities = 52/234 (22%), Positives = 93/234 (39%), Gaps = 32/234 (13%)
Query: 437 LYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLT 496
G+ +D++K ++ + FTY L +G WNG+IGE+ QRA +A+ LT
Sbjct: 53 CKGFCIDILKKLSRTVKFTYDLYLVTNGKHG--KKVNNVWNGMIGEVVYQRAVMAVGSLT 110
Query: 497 ITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLL 556
I ER VDF++PF+ GIS++ + D F P + T
Sbjct: 111 INEERSEVVDFSVPFVETGISVMVSRQVTGLSD-KKFQRPHDYSPPFRFGTVP------- 162
Query: 557 FFLARISSGSRLRYSAKNSNVSLYQRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFF 616
S + + + Y MH M + ++ + + K F
Sbjct: 163 ------------NGSTERNIRNNYPYMHQYMT----RFNQRGVEDALVSLKTGKLDA-FI 205
Query: 617 MESTGIEYEVEKN--CDLMQVGG--LLDSKGYGIAMPT-SKFLAKFSFGFAKLR 665
++ + Y+ ++ C L+ +G + + GYGIA+ S + + +
Sbjct: 206 YDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFV 259
Score = 41.2 bits (95), Expect = 3e-04
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 683 LYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNGLIGELQE-QVDTFILFFI 741
G+ +D++K ++ + FTY L +G WNG+IGE+ + +
Sbjct: 53 CKGFCIDILKKLSRTVKFTYDLYLVTNGKHG--KKVNNVWNGMIGEVVYQRAVMAVGSLT 110
Query: 742 YS 743
+
Sbjct: 111 IN 112
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand
binding core {Rat (Rattus norvegicus), GluR5 [TaxId:
10116]}
Length = 246
Score = 79.1 bits (193), Expect = 7e-17
Identities = 95/266 (35%), Positives = 129/266 (48%), Gaps = 41/266 (15%)
Query: 407 TLTVTSKTFAKLRVLFQGEPYMMKNP------ETGELYGYSVDLIKMIANELNFTYKFVL 460
TL VT+ EPY+M GY +DL+K ++N L F Y L
Sbjct: 1 TLIVTTIL---------EEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKL 51
Query: 461 ERENTYGTLNPQTGKWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILY 520
+ YG N G+WNG++ EL + RADLA+ LTIT R +DF+ PFMTLGISILY
Sbjct: 52 VPDGKYGAQND-KGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILY 110
Query: 521 RKPAKKQPDLFSFLEPLSFDVWVYMATAYLGVSLLLFFLARISSGSRLRYSAKNSNVSLY 580
RKP D G K S +S Y
Sbjct: 111 RKPIDS------------ADDLAKQTKIEYGA----------VRDGSTMTFFKKSKISTY 148
Query: 581 QRMHSAMESSRPSVFVKSNKEGVERVVKEKGKYAFFMESTGIEYEVEKNCDLMQVGGLLD 640
++M + M S + S VK++ EG++RV+ YA MEST IEY ++NC+L Q+GGL+D
Sbjct: 149 EKMWAFMSSRQQSALVKNSDEGIQRVL--TTDYALLMESTSIEYVTQRNCNLTQIGGLID 206
Query: 641 SKGYGIAMPT-SKFLAKFSFGFAKLR 665
SKGYG+ P S + K + +L+
Sbjct: 207 SKGYGVGTPIGSPYRDKITIAILQLQ 232
Score = 43.6 bits (101), Expect = 4e-05
Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 671 EPYMMKNP------ETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTGKWNG 724
EPY+M GY +DL+K ++N L F Y L + YG N G+WNG
Sbjct: 10 EPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQND-KGEWNG 68
Query: 725 LIGELQEQVDTFILFFIYSILFFIYTFVNEAVSTRLVAGMWWFFTLIMISSY 776
++ EL + + + L + + +
Sbjct: 69 MVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPIDSADDL 120
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 477
Score = 54.6 bits (130), Expect = 3e-08
Identities = 53/428 (12%), Positives = 129/428 (30%), Gaps = 70/428 (16%)
Query: 17 AFEIAVRRINKDFKALP--------------PDIILEPIVQHVENYDSLHTAK------- 55
A + +IN D LP + LE ++ + + +
Sbjct: 46 AMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGLNRC 105
Query: 56 ------LMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVH 109
L T + IA + GP S ++++ Q+FDIP + T +
Sbjct: 106 LPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKY 165
Query: 110 GVNVYPESHLISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPS 169
+ V P L ++ + I+ +W + ++ + +
Sbjct: 166 FLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMD------AFKELAAQEGLC 219
Query: 170 VTIRQLPPDTDDYRPLLKEIKN-----SSESHILLDCSMDKTVTILKQAKEVHLMGDYQ- 223
+ + + ++ ++ C +L + + ++G++
Sbjct: 220 IAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFSL 279
Query: 224 -------NYILSLTSYWINAHTVDFQDFQ----PGYAN--ITTVRMINPTNPHIR----- 265
+ + Y + A+ Q + + + N NP
Sbjct: 280 IGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQH 339
Query: 266 --------SIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLFAAALQSLGERKPLP 317
++ +++ G + + +A+Y A LQ++
Sbjct: 340 RFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPG 399
Query: 318 TPLSCENPSSWQHGLGIGNLMKSITIDGMTGR-INLDSQ---TGRRNSFSLEFVEYVSDQ 373
C+ G + + + + G++G + D + GR + +L++ E
Sbjct: 400 HVGLCDAMKPID-GRKLLDFLIKSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYD 458
Query: 374 WKVLGTWN 381
+ +GTW+
Sbjct: 459 YVHVGTWH 466
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 223
Score = 50.0 bits (118), Expect = 3e-07
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 20/135 (14%)
Query: 417 KLRVLFQGE--PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTG 474
KL V P+ K G+ VDL IA EL Y+
Sbjct: 1 KLVVATDTAFVPFEFKQG--DLYVGFDVDLWAAIAKELKLDYELK-------------PM 45
Query: 475 KWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLFSFL 534
++G+I LQ + DLA+ +TIT ER+ A+DF+ + G+ ++ + D+ S
Sbjct: 46 DFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVK---ANNNDVKSVK 102
Query: 535 EPLSFDVWVYMATAY 549
+ V V T
Sbjct: 103 DLDGKVVAVKSGTGS 117
Score = 36.1 bits (82), Expect = 0.009
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 663 KLRVLFQGE--PYMMKNPETGELYGYSVDLIKMIANELNFTYKFV 705
KL V P+ K G+ VDL IA EL Y+
Sbjct: 1 KLVVATDTAFVPFEFKQG--DLYVGFDVDLWAAIAKELKLDYELK 43
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the
amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId:
287]}
Length = 373
Score = 43.1 bits (100), Expect = 9e-05
Identities = 38/358 (10%), Positives = 83/358 (23%), Gaps = 48/358 (13%)
Query: 5 GIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPI------VQHVENYDSLHTAKLMC 58
G+ E +AV ++N++ I ++ +
Sbjct: 12 GVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDF------- 64
Query: 59 NATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESH 118
+ G+ + G R + + + D + P G S
Sbjct: 65 -IRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSA 123
Query: 119 LISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD 178
+ + + + +Y ++ ++ L P
Sbjct: 124 -------PLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPS 176
Query: 179 TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHT 238
DD + ++ I + + T + + + G S +
Sbjct: 177 DDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIA----SLTTSEAE 232
Query: 239 VDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYD 298
V + P+ SI + T+ A Y
Sbjct: 233 VAKMESDVAE-------GQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYW 285
Query: 299 AVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQT 356
L A Q+ G + + + I ID G + ++ Q
Sbjct: 286 QTLLLGRAAQAAGNWRV----------------EDVQRHLYDIDIDAPQGPVRVERQN 327
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 346
Score = 41.7 bits (96), Expect = 2e-04
Identities = 47/369 (12%), Positives = 102/369 (27%), Gaps = 43/369 (11%)
Query: 5 GIFGPNEEEVATAFEIAVRRINKDFKALPPDIILEPIVQHVENYDSLHTAKLMCNATSEG 64
G + A++ IN ++ V++ + D + ++G
Sbjct: 13 GPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVG---VEYDDACDPKQAVAVANKIVNDG 69
Query: 65 IAAIFGP-QSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKG 123
I + G S + + + +P + S G
Sbjct: 70 IKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQ----G 125
Query: 124 ISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPDTDDYR 183
+ ++ I HD Y + + D V + D+
Sbjct: 126 PTAAKYILETVKPQRIAIIHDKQQYGEGL--ARSVQDGLKAANANVVFFDGITAGEKDFS 183
Query: 184 PLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVDFQD 243
L+ +K + + + +L+QA+ V L + + N +
Sbjct: 184 ALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEG 243
Query: 244 FQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYDAVYLF 303
T+ +P + I++ ++ + Y AV
Sbjct: 244 ML------VTMPKRYDQDPANQGIVDALKADKKDPSGPYVWIT----------YAAVQSL 287
Query: 304 AAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGRRNSFS 363
A AL+ G +P L + +K+ + + G +N D + G F
Sbjct: 288 ATALERTGSDEP----------------LALVKDLKANGANTVIGPLNWDEK-GDLKGFD 330
Query: 364 LEFVEYVSD 372
++ +D
Sbjct: 331 FGVFQWHAD 339
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO)
protein {Salmonella typhimurium [TaxId: 90371]}
Length = 238
Score = 40.8 bits (94), Expect = 4e-04
Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 16/117 (13%)
Query: 417 KLRVLFQGE--PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTG 474
+R+ P+ K+ GE G+ +DL + + +
Sbjct: 5 TVRIGTDTTYAPFSSKD-AKGEFIGFDIDLGNEMCKRMQVKCTW-------------VAS 50
Query: 475 KWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRKPAKKQPDLF 531
++ LI L+ ++ D I L+IT +R+ + F+ ++ K + QP L
Sbjct: 51 DFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLE 107
Score = 33.5 bits (75), Expect = 0.077
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 663 KLRVLFQGE--PYMMKNPETGELYGYSVDLIKMIANELNFTYKF 704
+R+ P+ K+ GE G+ +DL + + +
Sbjct: 5 TVRIGTDTTYAPFSSKD-AKGEFIGFDIDLGNEMCKRMQVKCTW 47
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core
{Synechocystis sp., GluR0 [TaxId: 1143]}
Length = 226
Score = 39.7 bits (91), Expect = 6e-04
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 417 KLRVLFQGEP--YMMKNPETGELYGYSVDLIKMIANELNFTYKFV 459
L+V G P + G S+D+ + +A + ++V
Sbjct: 5 ALKVGVVGNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYV 49
Score = 39.7 bits (91), Expect = 6e-04
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 663 KLRVLFQGEP--YMMKNPETGELYGYSVDLIKMIANELNFTYKFV 705
L+V G P + G S+D+ + +A + ++V
Sbjct: 5 ALKVGVVGNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYV 49
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA
{Campylobacter jejuni [TaxId: 197]}
Length = 248
Score = 35.4 bits (80), Expect = 0.019
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 417 KLRVLFQGE--PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQTG 474
+R+ G+ P+ + E G GY + L K IA EL V
Sbjct: 12 VVRIGVFGDKPPFGYVD-EKGNNQGYDIALAKRIAKELFGDENKV----------QFVLV 60
Query: 475 KWNGLIGELQEQRADLAICDLTITSERRAAVDFTMPFMTLGISILYRK 522
+ + L+ + D+ + + T T +R VDF P+M + + + K
Sbjct: 61 EAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPK 108
Score = 31.2 bits (69), Expect = 0.37
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 663 KLRVLFQGE--PYMMKNPETGELYGYSVDLIKMIANELNFTYKFVLERENTYGTLNPQ 718
+R+ G+ P+ + E G GY + L K IA EL V
Sbjct: 12 VVRIGVFGDKPPFGYVD-EKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEF 68
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4,
N-terminal domain {Clostridium cellulolyticum, atcc
35319 [TaxId: 1521]}
Length = 454
Score = 32.7 bits (74), Expect = 0.19
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 19/88 (21%)
Query: 258 NPTNPHIRSIMNGWIYEENERGRSLNV------------------RAETVKIEAALMYDA 299
P +PH R+ W + + V E A Y+A
Sbjct: 366 PPQHPHHRTAHGSWTDQMTSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNA 425
Query: 300 VYLFA-AALQSLGERKPLPTPLSCENPS 326
+ A A + P+P + E +
Sbjct: 426 GFTGALAKMYKHSGGDPIPNFKAIEKIT 453
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus
influenzae [TaxId: 727]}
Length = 317
Score = 30.0 bits (66), Expect = 1.1
Identities = 33/316 (10%), Positives = 70/316 (22%), Gaps = 54/316 (17%)
Query: 60 ATSEGIAAIFGP-QSIENRNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESH 118
A GI + GP I+ Q+ + + N +
Sbjct: 52 AKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNA-------TPNSRAIPQLCYYGL 104
Query: 119 LISKGISVIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDDKEIRPGRPSVTIRQLPPD 178
N M D Q+V + ++ G + P
Sbjct: 105 SPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQ-LAGTDANIRYYNLPA 163
Query: 179 TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHT 238
Y + NS+ + + S + + + ++ N +T
Sbjct: 164 DVTY---FVQENNSNTTALYAVASPTELAEMKGYLTN-IVPNLAIYASSRASASATNTNT 219
Query: 239 VDFQDFQPGYANITTVRMINPTNPHIRSIMNGWIYEENERGRSLNVRAETVKIEAALMYD 298
G + +P + + + L A+ D
Sbjct: 220 DFIAQMN-GVQFSDIPFFKDTNSPQYQKLAK--STGGEYQLMRL----------YAMGAD 266
Query: 299 AVYLFAAALQSLGERKPLPTPLSCENPSSWQHGLGIGNLMKSITIDGMTGRINLDSQTGR 358
A L + + + G+TG ++ D+
Sbjct: 267 AWLLINQFNEL--------------------------RQVPGYRLSGLTGILSADTN--C 298
Query: 359 RNSFSLEFVEYVSDQW 374
+ + +Y
Sbjct: 299 NVERDMTWYQYQDGAI 314
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 28.2 bits (62), Expect = 2.5
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 32/144 (22%)
Query: 21 AVRRINKDFKAL----PPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIEN 76
A RR+ +DFK + PP + P+ +V ++++ I GP
Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAM----------------IIGPADTPY 47
Query: 77 RNIIESMCQMFDIPHVEAFWDPNKYFIPTNGVHGVNVYPESHLISKGISVIINDMDWDTF 136
+ + FD + P + H NVY I D+ + +
Sbjct: 48 EDGTFRLLLEFDEEYP---NKPPHVKFLSEMFHP-NVYANGE--------ICLDILQNRW 95
Query: 137 TIIYETHDNLVYLQQVLENAHDDD 160
T Y+ L +Q + + +
Sbjct: 96 TPTYDVASILTSIQSLFNDPNPAS 119
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 28.2 bits (62), Expect = 2.7
Identities = 20/155 (12%), Positives = 49/155 (31%), Gaps = 38/155 (24%)
Query: 20 IAVRRINKDFKAL----PPDIILEPIVQHVENYDSLHTAKLMCNATSEGIAAIFGPQSIE 75
A +R+ K+ + L PP I+ P + +++ + GP
Sbjct: 3 TAQKRLLKELQQLIKDSPPGIVAGPKSE-----NNIFIWDCLI----------QGP---- 43
Query: 76 NRNIIESMCQMFDIPHVEAFWDPNKYFIP-----TNGVHGVNVYPESH-----LISKGIS 125
+ + + + + P T + N+YP L S G
Sbjct: 44 -----PDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDD 98
Query: 126 VIINDMDWDTFTIIYETHDNLVYLQQVLENAHDDD 160
+ ++ + ++ + L+ + +L + +
Sbjct: 99 PNMYELAEERWSPVQSVEKILLSVMSMLSEPNIES 133
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
aureus [TaxId: 1280]}
Length = 270
Score = 28.1 bits (62), Expect = 4.8
Identities = 9/51 (17%), Positives = 12/51 (23%)
Query: 222 YQNYILSLTSYWINAHTVDFQDFQPGYANITTVRMINPTNPHIRSIMNGWI 272
+ N S T HT F + P AN +
Sbjct: 28 FDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATAGDNNDYTA 78
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic
disease virus [TaxId: 11976]}
Length = 497
Score = 28.1 bits (62), Expect = 5.4
Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Query: 192 SSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHTVDFQDFQPGYANI 251
+ + +D + L L DY + +++ + D
Sbjct: 217 IAVGVDMTSRDVDVIINNLTSKASDFLCLDYSKWDSTMSPCVVRLAIDILADC--CEQTE 274
Query: 252 TTVRMINPTNPHIRSIMNGWIYE 274
T ++ H +I++ I +
Sbjct: 275 LTKSVVLTLKSHPMTILDAMIVQ 297
>d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 172
Score = 27.1 bits (60), Expect = 5.5
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 6/51 (11%)
Query: 46 ENYDSLHTAKLMCNATSEGIAAIFGPQSIENRNIIESMCQMFDIPHVEAFW 96
E+Y + I GP ++ R E D+
Sbjct: 74 ESYGQSPATIYEAVQGNPAYRGIAGPINLNTRYFFE------DVSTGLVPL 118
>d2alaa2 f.10.1.1 (A:1-292) Fusion glycoprotein E1 {Semliki forest
virus [TaxId: 11033]}
Length = 292
Score = 27.5 bits (61), Expect = 6.6
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 234 INAHTVDFQDFQPGYANITTVRMINPTNPHIR----SIMNGWIYEENERGRSLNVRA 286
I + TV+ D YAN T +++ P+ + +G+ Y E+G +LN +A
Sbjct: 203 IQSRTVESNDL---YAN-TALKLARPSPGMVHVPYTQTPSGFKYWLKEKGTALNTKA 255
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 26.7 bits (58), Expect = 7.1
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 20 IAVRRINKDFKAL----PPDIILEPIVQHVENYDSLH 52
IA+ R+ ++ KA P + P + ++
Sbjct: 2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMN 38
>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 412
Score = 27.0 bits (59), Expect = 9.8
Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 179 TDDYRPLLKEIKNSSESHILLDCSMDKTVTILKQAKEVHLMGDYQNYILSLTSYWINAHT 238
+ Y PL++ ++ + ++ T + +Q + + + Y +
Sbjct: 33 AETYLPLIRVLERLRAEGVEAPFTLGITPILAEQLADARIKEGFWAYAKD----RLERAQ 88
Query: 239 VDFQDFQP 246
D+Q ++
Sbjct: 89 GDYQRYRG 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,111,918
Number of extensions: 148234
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 39
Length of query: 821
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 728
Effective length of database: 1,130,706
Effective search space: 823153968
Effective search space used: 823153968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)