Query psy16207
Match_columns 258
No_of_seqs 154 out of 1129
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 23:33:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03121 alpha_CARP_X_XI_like C 100.0 4.6E-75 9.9E-80 514.3 25.1 235 1-237 2-256 (256)
2 cd03119 alpha_CA_I_II_III_XIII 100.0 4.5E-71 9.7E-76 489.7 24.5 230 1-236 13-259 (259)
3 cd03126 alpha_CA_XII_XIV Carbo 100.0 2E-70 4.4E-75 482.8 24.1 226 1-236 2-249 (249)
4 PF00194 Carb_anhydrase: Eukar 100.0 1.4E-70 3.1E-75 486.2 20.7 231 1-236 9-256 (256)
5 cd03149 alpha_CA_VII Carbonic 100.0 5E-70 1.1E-74 476.9 23.7 219 17-236 1-236 (236)
6 cd03118 alpha_CA_V Carbonic an 100.0 1.8E-69 3.9E-74 473.3 24.0 219 17-236 1-236 (236)
7 cd03122 alpha_CARP_receptor_li 100.0 2.2E-69 4.8E-74 477.3 24.6 228 1-233 2-252 (253)
8 cd03123 alpha_CA_VI_IX_XII_XIV 100.0 1.7E-69 3.8E-74 476.7 23.7 224 1-236 2-248 (248)
9 cd03120 alpha_CARP_VIII Carbon 100.0 4.3E-69 9.2E-74 476.2 24.5 227 2-236 2-256 (256)
10 cd03150 alpha_CA_IX Carbonic a 100.0 3.2E-69 7E-74 474.6 22.8 223 1-236 2-246 (247)
11 cd03125 alpha_CA_VI Carbonic a 100.0 1.1E-68 2.3E-73 471.7 23.9 223 1-236 2-248 (249)
12 KOG0382|consensus 100.0 4.3E-68 9.3E-73 468.1 22.0 227 1-236 14-261 (262)
13 cd03117 alpha_CA_IV_XV_like Ca 100.0 1.2E-66 2.6E-71 455.2 22.5 212 17-234 1-234 (234)
14 PLN02202 carbonate dehydratase 100.0 7.5E-65 1.6E-69 453.8 21.2 219 1-251 39-279 (284)
15 cd00326 alpha_CA Carbonic anhy 100.0 7.6E-64 1.7E-68 435.9 21.9 208 17-233 1-227 (227)
16 cd03124 alpha_CA_prokaryotic_l 100.0 8.2E-64 1.8E-68 432.6 19.3 199 1-233 2-215 (216)
17 COG3338 Cah Carbonic anhydrase 100.0 2.2E-62 4.7E-67 413.1 15.0 199 1-235 36-249 (250)
18 PLN02179 carbonic anhydrase 100.0 1.8E-52 3.9E-57 364.6 16.1 170 1-194 47-230 (235)
19 PF09211 DUF1958: Domain of un 44.1 11 0.00023 26.4 0.8 16 96-111 7-22 (65)
20 PHA02614 Major capsid protein 41.1 49 0.0011 30.6 4.7 49 155-203 200-267 (363)
21 PF12117 DUF3580: Protein of u 37.1 23 0.0005 27.2 1.7 26 2-28 1-27 (120)
22 PF08942 DUF1919: Domain of un 30.2 33 0.00073 29.4 1.8 18 106-128 93-110 (201)
23 COG3402 Uncharacterized conser 22.4 61 0.0013 26.7 1.9 31 69-104 108-138 (161)
24 PF06255 DUF1020: Protein of u 20.3 65 0.0014 29.2 1.7 46 48-100 64-109 (327)
No 1
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=100.00 E-value=4.6e-75 Score=514.29 Aligned_cols=235 Identities=52% Similarity=0.961 Sum_probs=210.1
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecCCCCCeeeecc-CceeEEEecCceeEEEEcCCCceeEEEeCCCccee
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKI-RINGGLTNTGHSVVFTVENTTRYHINVTGGPLSYK 79 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~~~-~~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~~ 79 (258)
|++|+.++++|..|++|++||||||.+..+.+++.+.+|.|.|. ....+|.|+||||+|.+..+ ..+.+.||+|..+
T Consensus 2 P~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~~l~~L~~~~~~~~~~~l~N~Ghtv~v~~~~~--~~~~i~gG~l~~~ 79 (256)
T cd03121 2 PSFWGLVNSAWNLCSKGRRQSPVDIEPSRLLFDPFLTPLRIDTGRKVSGTFYNTGRHVSFRPDKD--PVVNISGGPLSYR 79 (256)
T ss_pred CCcccccCCchhhccCCCCcCCEeEeccceEECCCCCceeeccCCCCceEEEECCEEEEEEECCC--CceEEeCCCCCCc
Confidence 88999999999999999999999999888777788888999887 66789999999999998643 3478889999999
Q ss_pred eeeEEEEEEecCCCCCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccCC--------------
Q psy16207 80 YQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPLS-------------- 145 (258)
Q Consensus 80 Y~l~q~HfHwG~~~~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~~-------------- 145 (258)
|+|.|||||||+.++.||||+|||++|||||||||++.++|.+++||.++++++|||||||+++..
T Consensus 80 Y~l~Q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVvgv~~~~g~~~n~~l~~i~~~l~~ 159 (256)
T cd03121 80 YRLEEIRLHFGREDEQGSEHTVNGQAFPGEVQLIHYNSELYPNFSEASKSPNGLVIVSLFVKIGETSNPELRRLTNRDTI 159 (256)
T ss_pred EEEEEEEEecCCCCCCCCceeeCCcccCceEEEEEEcccccCCHHHHhcCCCCeEEEEEEEeecccCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999988999999999999999999999999821
Q ss_pred -----CCCeeEecccCccccCCCCCCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCCCC
Q psy16207 146 -----PGGAVEVKHLSIVGLLPETKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNN 220 (258)
Q Consensus 146 -----~g~~~~~~~~~l~~Llp~~~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~~N 220 (258)
+++...+..|++.+|||....||+|.||||||||+|+|+|+||++|+.||.+||++||+++..........+.+|
T Consensus 160 ~~i~~~~~~~~~~~~~l~~Llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~N 239 (256)
T cd03121 160 TSIRYKGDAYFLQDLSIELLLPETDHYITYEGSLTSPGCHETVTWIILNKPIYITKEQMHSLRLLSQNSPSQEKAPMSPN 239 (256)
T ss_pred cccccCCceeecCCCCHHHHCCCCCceEEeeccccCCCCCcceEEEEeCccEecCHHHHHHHHHHhhccCCcccCcCCCC
Confidence 233344557999999999899999999999999999999999999999999999999999865433333457899
Q ss_pred CCCCCCCCCCeEEEeee
Q psy16207 221 YRPPQPLHHRPLRTNID 237 (258)
Q Consensus 221 ~Rp~Qpln~R~V~~~~~ 237 (258)
+||+||||||.|+.++|
T Consensus 240 ~Rp~Q~ln~R~V~~~~~ 256 (256)
T cd03121 240 FRPVQPLNNRPVRTNIN 256 (256)
T ss_pred CCCCCCCCCCeEEeeCC
Confidence 99999999999998765
No 2
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=100.00 E-value=4.5e-71 Score=489.74 Aligned_cols=230 Identities=31% Similarity=0.629 Sum_probs=200.4
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecCCCCCeeeeccCc-eeEEEecCceeEEEEcCCCceeEEEeCCCccee
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRI-NGGLTNTGHSVVFTVENTTRYHINVTGGPLSYK 79 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~~~~~-~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~~ 79 (258)
|++|+.+ |+.|. |++||||||.+..+.+++.+.+|.|.|... ..+|.|+||||+|.+.... ..+.+.||+|..+
T Consensus 13 p~~W~~~---~~~~~-G~~QSPI~I~~~~~~~~~~l~~l~~~y~~~~~~~l~N~G~tv~~~~~~~~-~~~~~~gg~l~~~ 87 (259)
T cd03119 13 PEHWHEL---FPIAK-GDRQSPIDIKTKDAKHDPSLKPLSVSYDPATAKTILNNGHSFNVEFDDTD-DRSVLRGGPLTGS 87 (259)
T ss_pred ccccccc---CcCCC-CCCCCCEeEccCeeeEcCCCCceecccccCcceEEEeCCeeEEEEeCCCC-CcceEeCCCCCCc
Confidence 6788776 34576 999999999988877778888888888753 5689999999999987432 2467889999999
Q ss_pred eeeEEEEEEecCCCCCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccC---------------
Q psy16207 80 YQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPL--------------- 144 (258)
Q Consensus 80 Y~l~q~HfHwG~~~~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~--------------- 144 (258)
|.|.|||||||+.+..||||+|||++|||||||||++. +|.++++|+.+++++|||||||++|.
T Consensus 88 Y~l~q~HfHwG~~~~~gSEH~idg~~~p~E~HlVH~n~-~y~~~~~A~~~~~glaVvgvl~~~g~~n~~l~~i~~~l~~i 166 (259)
T cd03119 88 YRLRQFHFHWGSSDDHGSEHTVDGVKYAAELHLVHWNS-KYGSFGEAAKQPDGLAVVGVFLKVGEANPELQKVLDALDSI 166 (259)
T ss_pred EEEEEEEEEeCCCCCCCccceecCccccceEEEEEecc-cCCCHHHHhcCCCCeEEEEEEEEecccchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987 79999999999999999999999982
Q ss_pred -CCCCeeEecccCccccCCCCCCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q psy16207 145 -SPGGAVEVKHLSIVGLLPETKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRP 223 (258)
Q Consensus 145 -~~g~~~~~~~~~l~~Llp~~~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp 223 (258)
.++....+..|++.+|||+..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++....+.....+.+|+||
T Consensus 167 ~~~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTTPpC~E~V~W~V~~~~i~is~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp 246 (259)
T cd03119 167 KTKGKQAPFTNFDPSCLLPASLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQMAKFRSLLFNAEGEPPCPMVDNWRP 246 (259)
T ss_pred ccCCceeeecCCCHHHHcCCCCCeEEeccccCCCCCCCceEEEEeCCeeeCCHHHHHHHHHHhhccCCCccccccCCCCC
Confidence 2344455667999999999889999999999999999999999999999999999999999864333333568899999
Q ss_pred CCCCCCCeEEEee
Q psy16207 224 PQPLHHRPLRTNI 236 (258)
Q Consensus 224 ~Qpln~R~V~~~~ 236 (258)
+||||||.|+.+|
T Consensus 247 ~Qpln~R~V~~~~ 259 (259)
T cd03119 247 PQPLKGRKVRASF 259 (259)
T ss_pred CCCCCCCEEEecC
Confidence 9999999999864
No 3
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=100.00 E-value=2e-70 Score=482.84 Aligned_cols=226 Identities=31% Similarity=0.600 Sum_probs=194.1
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecCCCCCeeee-ccC---ceeEEEecCceeEEEEcCCCceeEEEeCCCc
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHID-KIR---INGGLTNTGHSVVFTVENTTRYHINVTGGPL 76 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~-~~~---~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l 76 (258)
|++|+. .|+.|+ |++||||||.+..+.+++.+.+|.|. |.. ...+|.|+||||+|.+... +.+. +|
T Consensus 2 p~~W~~---~~~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~l~N~Ghtv~v~~~~~----~~~~--~l 71 (249)
T cd03126 2 ENSWPK---KYPFCG-GVAQSPIDIHTDILQYDSSLPPLEFHGYNVSGTEQFTLTNNGHTVQLSLPPT----MHIG--GL 71 (249)
T ss_pred CCcccc---cCCCCC-CCccCCEeEecCceeECCCCCccEEeccccCCCCceEEEECCEeEEEEEcCC----ceec--CC
Confidence 789966 477998 99999999998877777888888884 553 2579999999999998642 3343 45
Q ss_pred ceeeeeEEEEEEecCCC-CCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccC-----------
Q psy16207 77 SYKYQFHELHIHYGLQD-NMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPL----------- 144 (258)
Q Consensus 77 ~~~Y~l~q~HfHwG~~~-~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~----------- 144 (258)
..+|.|.|||||||+.+ ..||||+|||++|||||||||++.++|.++++|..+++|+|||||||+++.
T Consensus 72 ~~~Y~l~qfHfHwG~~~~~~gSEH~idG~~y~~E~HlVH~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~n~~~~~i~~~ 151 (249)
T cd03126 72 PFKYTASQLHLHWGQRGSPEGSEHTISGKHFAAELHIVHYNSDKYPDISTAMNKSQGLAVLGILIEVGPFNPSYEKIFSH 151 (249)
T ss_pred CccEEEEEEEEEeCCCCCCCCceeeecCcccCceEEEEEecCccCCCHHHHhhcCCCeEEEEEEEEecCCChhHHHHHHH
Confidence 67999999999999965 489999999999999999999998889999999999999999999999982
Q ss_pred -----CCCCeeEecccCccccCCCC-CCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCC
Q psy16207 145 -----SPGGAVEVKHLSIVGLLPET-KYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLG 218 (258)
Q Consensus 145 -----~~g~~~~~~~~~l~~Llp~~-~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~ 218 (258)
.+++...+..|++.+|||.. ..||+|.||||||||+|+|+|+||++|+.||++||++||+++..........+.
T Consensus 152 l~~i~~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~~~~~~~~~~~~~~~ 231 (249)
T cd03126 152 LHEVKYKDQKVSVPGFNVQELLPKRLDEYYRYEGSLTTPPCYPSVLWTVFRNPVQISQEQLLALETALYSTEEDESREMV 231 (249)
T ss_pred hhhcccCCceeEcCCCCHHHhCccccCCeEEEeccCcCCCCcCceEEEEeCCceecCHHHHHHHHHHhhhcccCccCccc
Confidence 23455556679999999975 679999999999999999999999999999999999999988643333345688
Q ss_pred CCCCCCCCCCCCeEEEee
Q psy16207 219 NNYRPPQPLHHRPLRTNI 236 (258)
Q Consensus 219 ~N~Rp~Qpln~R~V~~~~ 236 (258)
+|+||+||||||.|+.+|
T Consensus 232 ~N~Rp~QplngR~V~~~f 249 (249)
T cd03126 232 NNYRQVQPFNERLVFASF 249 (249)
T ss_pred CCCCCCCCCCCCEEEecC
Confidence 999999999999999875
No 4
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=100.00 E-value=1.4e-70 Score=486.19 Aligned_cols=231 Identities=36% Similarity=0.731 Sum_probs=194.6
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecCCCCCeeeeccC-ceeEEEecCceeEEEEcCCCceeEEEeCCCccee
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIR-INGGLTNTGHSVVFTVENTTRYHINVTGGPLSYK 79 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~~~~-~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~~ 79 (258)
|++|+.+ ++.|. |++||||||.+..+.+++.|.++.|.|.. ...++.|+||+++|.+++... .+.+.||++...
T Consensus 9 p~~W~~~---~~~~~-G~~QSPInI~~~~~~~~~~l~~l~~~~~~~~~~~~~N~G~tv~v~~~~~~~-~~~i~g~~l~~~ 83 (256)
T PF00194_consen 9 PENWPKL---YPCCG-GKRQSPININTSEAVYDPSLPPLKFSYYESSAGTLKNNGHTVQVNFDDTNN-KPTISGGPLPGE 83 (256)
T ss_dssp GGGHHHT---SGGGG-SSS-S-BEE-GGGSEEETTSEEEEEESTTSGEEEEEE-SSSEEEEECTSSS-SSEEEETTESSE
T ss_pred hhhhhhh---CcccC-CCccCCEeeCcCccccccCCCCcEEeeccccceEEEecCceEEEEeCCCcc-cceecCCCccce
Confidence 6789775 45788 99999999999888888888889998864 456999999999999986432 467899999999
Q ss_pred eeeEEEEEEecCCCCCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEcc----------------
Q psy16207 80 YQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFP---------------- 143 (258)
Q Consensus 80 Y~l~q~HfHwG~~~~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~---------------- 143 (258)
|.|.|||||||++++.||||+|||++|||||||||++.++|.++++|...++++||||+|++++
T Consensus 84 Y~l~q~HfHwg~~~~~gSEH~idG~~y~~E~H~Vh~~~~~y~~~~~a~~~~~~laVl~v~~~~~~~n~~l~~i~~~l~~i 163 (256)
T PF00194_consen 84 YRLEQFHFHWGSDNSSGSEHTIDGKRYPMEMHFVHRNSKKYSSFEEASKEPDGLAVLGVFFEIGESNPFLQPILDALPNI 163 (256)
T ss_dssp EEEEEEEEEESSSTTSSSSSEETTBE-SEEEEEEEEETTTGSSHHHHTTSTTSEEEEEEEEEESS--GHHHHHHHHGGGG
T ss_pred EEEEEEEEecccCCCCccccchhhhhcccceeeeeeccccccchhhhhhccccceEEEEEeeccccccccchhhhhhhhc
Confidence 9999999999999999999999999999999999999779999999999999999999999998
Q ss_pred CCCCCeeEecccCccccCCCCCCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q psy16207 144 LSPGGAVEVKHLSIVGLLPETKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRP 223 (258)
Q Consensus 144 ~~~g~~~~~~~~~l~~Llp~~~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp 223 (258)
..++..+.+..|+|++|||....||+|.||||||||+|+|+|+||++|+.||.+||++||+++....++...++.+|+||
T Consensus 164 ~~~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTtPpCtE~V~W~V~~~pi~is~~Ql~~f~~~~~~~~~~~~~~~~~N~Rp 243 (256)
T PF00194_consen 164 PYPGSSTPIQSFSLSDLLPSTRSYYRYNGSLTTPPCTEGVTWIVFKEPIPISQDQLNKFRKLLGNNNGEEFAPLVNNFRP 243 (256)
T ss_dssp TSTTEEEEEESBBGGGGSCSSSSEEEEEEE-SSTTSSSEEEEEEESSEEEEEHHHHHHHHTSBSSCTTSSECBSSS-S--
T ss_pred cccccccccccccccccCCCCCCEEEEcccccCCCcceeEEEEEeeeEEEEeHHHHHHHHHHhhcccCCccccCCCCcCC
Confidence 23566677888999999999999999999999999999999999999999999999999999876554445678999999
Q ss_pred CCCCCCCeEEEee
Q psy16207 224 PQPLHHRPLRTNI 236 (258)
Q Consensus 224 ~Qpln~R~V~~~~ 236 (258)
+||||||.|++||
T Consensus 244 ~QpLn~R~V~~sf 256 (256)
T PF00194_consen 244 VQPLNGRKVYASF 256 (256)
T ss_dssp -B--TTS-EEESS
T ss_pred CCCCCCcEEEeCC
Confidence 9999999999987
No 5
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=100.00 E-value=5e-70 Score=476.88 Aligned_cols=219 Identities=32% Similarity=0.642 Sum_probs=193.4
Q ss_pred CCCCCCceecCCCceecCCCCCeeeeccC-ceeEEEecCceeEEEEcCCCceeEEEeCCCcceeeeeEEEEEEecCCCCC
Q psy16207 17 GRRQSPVNLEPSKLLYDPNLRPVHIDKIR-INGGLTNTGHSVVFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNM 95 (258)
Q Consensus 17 G~~QSPInI~~~~~~~~~~l~~l~~~~~~-~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~~Y~l~q~HfHwG~~~~~ 95 (258)
|++||||||.+..+.+++.+.+|.|.|.. ..+++.|+||||+|.+.... ..+.+.||+|..+|+|.|||||||++++.
T Consensus 1 G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~~~~N~Ghtv~v~~~~~~-~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~ 79 (236)
T cd03149 1 GNRQSPIDIVSSEAVYDPKLKPLSLSYDPCTSLSISNNGHSVMVEFDDSD-DKTVITGGPLENPYRLKQFHFHWGAKHGS 79 (236)
T ss_pred CCCCCCeeEccCceEECCCCCceEeecCCCcceEEEECCEEEEEEecCCC-CceEEecCCCCCcEEEEEEEEecCCCCCC
Confidence 78999999999888778888889998874 46799999999999986432 24678899999999999999999999999
Q ss_pred CCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccC----------------CCCCeeEecccCccc
Q psy16207 96 GSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPL----------------SPGGAVEVKHLSIVG 159 (258)
Q Consensus 96 gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~----------------~~g~~~~~~~~~l~~ 159 (258)
||||+|||++|||||||||++.++|.++++|+.+++|+|||||||++|. ..++...+..|++.+
T Consensus 80 gSEH~idg~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~~ 159 (236)
T cd03149 80 GSEHTVDGKTFPSELHLVHWNAKKYKSFGEAAAAPDGLAVLGVFLETGDEHPGLNRLTDALYMVRFKGTKAQFLDFNPKC 159 (236)
T ss_pred CCceeecCeeccceeeeeEecccccCCHHHHhhccCCcEEEEEEEEecCCCccHHHHHHHhhhcccCCcceeeccCCHHH
Confidence 9999999999999999999998789999999999999999999999982 234455566799999
Q ss_pred cCCCCCCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEee
Q psy16207 160 LLPETKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPLRTNI 236 (258)
Q Consensus 160 Llp~~~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp~Qpln~R~V~~~~ 236 (258)
|||+...||+|.||||||||+|+|+|+||++|+.||++||++||+++....+.....+.+|+||+||||||.|+.+|
T Consensus 160 llp~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~Rp~Q~ln~R~v~~~f 236 (236)
T cd03149 160 LLPKSLDYWTYPGSLTTPPLNESVTWIVLKEPIPVSEKQMGKFRELLFTSEEDQRNHMVNNFRPPQPLKGRTVRASF 236 (236)
T ss_pred HCCCCCCeEEecccCcCCCCCCceEEEEeCceeeCCHHHHHHHHHhhhhccCcccccccCCCcCCCCCCCCEEEecC
Confidence 99998899999999999999999999999999999999999999988543333334578999999999999999875
No 6
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=100.00 E-value=1.8e-69 Score=473.35 Aligned_cols=219 Identities=33% Similarity=0.600 Sum_probs=192.4
Q ss_pred CCCCCCceecCCCceecCCCCCeeeeccCc-eeEEEecCceeEEEEcCCCceeEEEeCCCcceeeeeEEEEEEecCCCCC
Q psy16207 17 GRRQSPVNLEPSKLLYDPNLRPVHIDKIRI-NGGLTNTGHSVVFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNM 95 (258)
Q Consensus 17 G~~QSPInI~~~~~~~~~~l~~l~~~~~~~-~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~~Y~l~q~HfHwG~~~~~ 95 (258)
|++||||||.+..+.+++.+.+|.|.|... .++|.|+||||+|.+..+.. .+.+.||+|..+|+|.|||||||++++.
T Consensus 1 G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~~~-~~~~~gg~l~~~Y~l~q~HfHwG~~~~~ 79 (236)
T cd03118 1 GTRQSPINIQWRDSVYDPQLAPLRVSYDPATCLYIWNNGYSFQVEFDDSTD-KSGISGGPLENHYRLKQFHFHWGANNEW 79 (236)
T ss_pred CCcCCCeeEecCceeECCCCCceEEecCCCCceEEEECCEEEEEEecCCCC-ceEEecCCCCCcEEEEEEEEEECCCCCC
Confidence 789999999888777788888899988753 46999999999999864322 3567899999999999999999999999
Q ss_pred CCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccC----------------CCCCeeEecccCccc
Q psy16207 96 GSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPL----------------SPGGAVEVKHLSIVG 159 (258)
Q Consensus 96 gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~----------------~~g~~~~~~~~~l~~ 159 (258)
||||+|||++|||||||||++.++|.++++|+.+++++|||||||++|. .++....+..|++.+
T Consensus 80 gSEH~idg~~~p~E~HlVH~n~~~y~~~~~A~~~~~~laVvgv~~~~g~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~~ 159 (236)
T cd03118 80 GSEHTVDGHTYPAELHLVHWNSVKYENFEEAVMEENGLAVIGVFLKLGAHHEGLQKLVDALPEVRHKDTVVEFNPFDPSC 159 (236)
T ss_pred CCceEECCEeccceeeEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCcCccHHHHHHHHHhcCcCCceeeecCCCHHH
Confidence 9999999999999999999998889999999999999999999999982 234444556799999
Q ss_pred cCCCCCCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEee
Q psy16207 160 LLPETKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPLRTNI 236 (258)
Q Consensus 160 Llp~~~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp~Qpln~R~V~~~~ 236 (258)
|||+...||+|.||||||||+|+|+|+||++|+.||.+||++||+++....+.....+.+|+||+||||||.|+.+|
T Consensus 160 llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~Rp~Qpln~R~V~~~f 236 (236)
T cd03118 160 LLPACRDYWTYPGSLTTPPLTESVTWIIQKQPIEVSPSQLSVFRTLLFTSRGEEEKVMVNNFRPLQPLMNRKVRSSF 236 (236)
T ss_pred HcccCCCEEEecCcccCCCCcCceEEEEeCccccCCHHHHHHHHHHhhhccCCccccccCCCCCCCCCCCCEEEecC
Confidence 99988999999999999999999999999999999999999999998543332334578999999999999999875
No 7
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=100.00 E-value=2.2e-69 Score=477.28 Aligned_cols=228 Identities=36% Similarity=0.659 Sum_probs=194.6
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecCCCCCeeeeccC---ceeEEEecCceeEEEEcCCCceeEEEeCCCcc
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIR---INGGLTNTGHSVVFTVENTTRYHINVTGGPLS 77 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~~~~---~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~ 77 (258)
|++|+. .|+.|++|++||||||.+..+.....+.+|.|.+.. ...+|.|+||||+|.+..+. ..++|+||+|.
T Consensus 2 p~~W~~---~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~~~~~~~~~l~N~Ghtv~v~~~~~~-~~~~i~gg~l~ 77 (253)
T cd03122 2 PKHWAK---KYPACGEGRQQSPIDIVEDTQVQRQGLQPLHFDGYEELTASTTLENTGKTVILRLEGNS-SDPFVSGGPLL 77 (253)
T ss_pred cccccc---cCCcCCCCCCCCCEeEeecceeccCCCCCeEEeccCCCCCceEEEECCeEEEEEecCCC-CceEEeCCCCC
Confidence 789987 477899999999999987543333337788888654 56799999999999987533 35789999999
Q ss_pred eeeeeEEEEEEecCCCCCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccC-------------
Q psy16207 78 YKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPL------------- 144 (258)
Q Consensus 78 ~~Y~l~q~HfHwG~~~~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~------------- 144 (258)
.+|.|.|||||||+++..||||+|||++|||||||||++. .|.+..||+++++++|||||||+++.
T Consensus 78 ~~Y~l~q~HFHwG~~~~~gSEH~idg~~yp~E~H~VH~n~-~~~~~~~A~~~~~~laVv~vl~~~g~~~n~~l~~i~~~l 156 (253)
T cd03122 78 GRYKFSEITFHWGTCNSDGSEHSIDGHKFPLEMQILHRNT-DFFDSFEAIKSPGGVLALAYLFELSHEDNPFLDPIIEGL 156 (253)
T ss_pred CcEEEEEEEEEeCCCCCCCCceeecCccCcceEEEEEEcC-CCCCHHHHhhcCCCeEEEEEEEEEecCCCHhHHHHHHHH
Confidence 9999999999999999999999999999999999999987 57777799999999999999999981
Q ss_pred ----CCCCeeEecccCccccCCC-CCCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCC--CCCCCC
Q psy16207 145 ----SPGGAVEVKHLSIVGLLPE-TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMK--HPKAPL 217 (258)
Q Consensus 145 ----~~g~~~~~~~~~l~~Llp~-~~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~--~~~~~~ 217 (258)
.+++...+..|++.+|||. ...||+|.||||||||+|+|+|+||++|+.||++||++||+++....+ .....+
T Consensus 157 ~~i~~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~ 236 (253)
T cd03122 157 RNVSRPGKEVELPPFPLSDLLPPFTDKYYSYEGSLTTPPCSETVEWIVFREPVPISSRQLEAFRELLTRRQDGVMSGDYL 236 (253)
T ss_pred HhcCCCCcEEEcCCCCHHHHhccccCCeEEEeeeccCCCCcCceEEEEeCceeecCHHHHHHHHHHhcccccccccCccc
Confidence 2344555667999999996 478999999999999999999999999999999999999999864311 112347
Q ss_pred CCCCCCCCCCCCCeEE
Q psy16207 218 GNNYRPPQPLHHRPLR 233 (258)
Q Consensus 218 ~~N~Rp~Qpln~R~V~ 233 (258)
.+|+||+||||||.|+
T Consensus 237 ~~N~Rp~Qpln~R~V~ 252 (253)
T cd03122 237 PNNGRPQQPLGSRTVF 252 (253)
T ss_pred cCCCcCCCCCCCCEec
Confidence 8999999999999985
No 8
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=100.00 E-value=1.7e-69 Score=476.67 Aligned_cols=224 Identities=33% Similarity=0.671 Sum_probs=193.4
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecCCCCCeee-eccC--c-eeEEEecCceeEEEEcCCCceeEEEeCCCc
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHI-DKIR--I-NGGLTNTGHSVVFTVENTTRYHINVTGGPL 76 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~~~~--~-~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l 76 (258)
|++|+++ |+.|+ |++||||||.+..+..++.+.+|.| .|.. . ..+|.|+||||+|.+... ..+.||+
T Consensus 2 p~~W~~~---~~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~----~~~~gg~- 72 (248)
T cd03123 2 EDHWPKK---YPACG-GKRQSPIDIQTDIVQFDPSLPPLELVGYDLPGTEEFTLTNNGHTVQLSLPPT----MHIRGGP- 72 (248)
T ss_pred CCccccc---CcCCC-CCCCCCEeEeccceeecCCCCcceecccccCCCCceEEEECCeeEEEEeCCC----ccccCCC-
Confidence 7899875 66898 9999999999888777777888887 3543 2 579999999999998643 4566765
Q ss_pred ceeeeeEEEEEEecCCC-CCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEcc-C----------
Q psy16207 77 SYKYQFHELHIHYGLQD-NMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFP-L---------- 144 (258)
Q Consensus 77 ~~~Y~l~q~HfHwG~~~-~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~-~---------- 144 (258)
..+|.|.|||||||+.+ ..||||+|||++|||||||||++.++|.++++|++.++++|||||||+++ .
T Consensus 73 ~~~Y~l~qfHfHwG~~~~~~gSEH~idG~~yp~E~HlVh~n~~~y~~~~~A~~~~~~laVl~v~~~~~~~~n~~~~~i~~ 152 (248)
T cd03123 73 GTEYTAAQLHLHWGGRGSLSGSEHTIDGIRFAAELHIVHYNSDKYSSFDEAADKPDGLAVLAILIEVGYPENTYYEKIIS 152 (248)
T ss_pred CCCEEEEEEEEeeCCCCCCCCccceecCccCcceeEEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCCCCccHHHHHH
Confidence 47899999999999998 68999999999999999999999889999999999999999999999998 1
Q ss_pred ------CCCCeeEecccCccccCCCC-CCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCC
Q psy16207 145 ------SPGGAVEVKHLSIVGLLPET-KYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPL 217 (258)
Q Consensus 145 ------~~g~~~~~~~~~l~~Llp~~-~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~ 217 (258)
.+++...+..|++.+|||.. ..||+|.||||||||+|+|+|+||++|+.||++||++||+++.... +.++
T Consensus 153 ~l~~i~~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~iS~~Ql~~fr~~l~~~~---~~~~ 229 (248)
T cd03123 153 HLHEIKYKGQETTVPGFNVRELLPEDLSHYYRYEGSLTTPPCYESVLWTVFRDPVTLSKEQLETLENTLMDTH---NKTL 229 (248)
T ss_pred HHHhhCcCCcEEecCCCCHHHhcCCCcCCeEEEeccCcCCCCcCcEEEEEeCCceecCHHHHHHHHHHhhccC---CCcc
Confidence 23444556679999999976 5799999999999999999999999999999999999998765322 3458
Q ss_pred CCCCCCCCCCCCCeEEEee
Q psy16207 218 GNNYRPPQPLHHRPLRTNI 236 (258)
Q Consensus 218 ~~N~Rp~Qpln~R~V~~~~ 236 (258)
.+|+||+||||||.|+.+|
T Consensus 230 ~~N~Rp~Qpln~R~V~~~~ 248 (248)
T cd03123 230 QNNYRATQPLNGRVVEASF 248 (248)
T ss_pred cCCCCCCCCCCCCEEEecC
Confidence 8999999999999999875
No 9
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=100.00 E-value=4.3e-69 Score=476.21 Aligned_cols=227 Identities=33% Similarity=0.646 Sum_probs=195.2
Q ss_pred CCcCCcCCCCccCCCCCCCCCceecCCCceecCCCC--CeeeeccCc-eeEEEecCceeEEEEcCCCceeEEEeCCCcc-
Q psy16207 2 AFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLR--PVHIDKIRI-NGGLTNTGHSVVFTVENTTRYHINVTGGPLS- 77 (258)
Q Consensus 2 ~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~--~l~~~~~~~-~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~- 77 (258)
.+|+.+.+ .|. |++||||||.+..+.+++.+. .|.+.|... .++|.|+||||+|.+... +.+.||+|.
T Consensus 2 ~~W~~~~~---~c~-G~~QSPInI~~~~~~~~~~~~~~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~----~~~~gg~l~~ 73 (256)
T cd03120 2 VEWGLLFP---EAN-GEYQSPINLNSREARYDPSLLEVRLSPNYVVCRDCEVINDGHTIQIILKSK----SVLSGGPLPQ 73 (256)
T ss_pred CcccccCC---CCC-CCcCCCccCccCceEECCCCCcccceeccCCCCceEEEECCeEEEEEeCCC----ceeecCCCCC
Confidence 58999854 698 999999999988777777765 467777643 579999999999998642 467899985
Q ss_pred -eeeeeEEEEEEecCCCCCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccC------------
Q psy16207 78 -YKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPL------------ 144 (258)
Q Consensus 78 -~~Y~l~q~HfHwG~~~~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~------------ 144 (258)
..|.|.|||||||+.++.||||+|||++|||||||||++.++|.++++|+..++|+|||||||++|.
T Consensus 74 ~~~Y~l~q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~~n~~l~~i~~~l 153 (256)
T cd03120 74 GHEFELAEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLYSSLEEAMGKPHGIAIIALFVQIGKEHVGLKAVTEIL 153 (256)
T ss_pred CceEEEEEEEEEeCCCCCCCCceeecCccccceEEEEEecCcccCCHHHHhcCCCceEEEEEEEeecCCCHhHHHHHHHh
Confidence 6899999999999999999999999999999999999998889999999999999999999999982
Q ss_pred ----CCCCeeEecccCccccCCC--CCCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCC-----CC
Q psy16207 145 ----SPGGAVEVKHLSIVGLLPE--TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMK-----HP 213 (258)
Q Consensus 145 ----~~g~~~~~~~~~l~~Llp~--~~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~-----~~ 213 (258)
.+++...+..|++.+|||. ...||+|.||||||||+|+|+|+||++|+.||.+||++||+++..... ..
T Consensus 154 ~~i~~~~~~~~~~~~~~~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~l~~~~~~~~~~~~~ 233 (256)
T cd03120 154 QDIQYKGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTTPPCSEGVTWILFRYPLTISQSQIEEFRRLRTHVKGAELVEGC 233 (256)
T ss_pred HhhccCCceeeecCCCHHHHCCCcCcCCeEEEeeecCCCCCCCCeEEEEeCCeeecCHHHHHHHHHHHhccccccccccc
Confidence 2355556667999999996 478999999999999999999999999999999999999999853211 11
Q ss_pred CCCCCCCCCCCCCCCCCeEEEee
Q psy16207 214 KAPLGNNYRPPQPLHHRPLRTNI 236 (258)
Q Consensus 214 ~~~~~~N~Rp~Qpln~R~V~~~~ 236 (258)
...+.+|+||+||||||.|+.+|
T Consensus 234 ~~~l~~N~Rp~Qpln~R~v~~~~ 256 (256)
T cd03120 234 DGLLGDNFRPTQPLSDRVIRAAF 256 (256)
T ss_pred cccccCCCCCCCCCCCCEEEecC
Confidence 12478999999999999999874
No 10
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=100.00 E-value=3.2e-69 Score=474.56 Aligned_cols=223 Identities=31% Similarity=0.594 Sum_probs=192.4
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecCCCCCeeee-cc--C-ceeEEEecCceeEEEEcCCCceeEEEeCCCc
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHID-KI--R-INGGLTNTGHSVVFTVENTTRYHINVTGGPL 76 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~-~~--~-~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l 76 (258)
|++|+.+. +.|+ |++||||||.+..+..++.+.+|.|. |. . ..++|.|+||||+|.+... ..+.||+
T Consensus 2 ~~~W~~~~---~~c~-G~~QSPIdI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~----~~~~~g~- 72 (247)
T cd03150 2 QPPWPSVS---PACA-GRFQSPVDIRPHLVAFCPALRPLELLGFDLPPSPSLRLLNNGHTVQLSLPSG----LRMALGP- 72 (247)
T ss_pred CCcccccC---CCCC-CCCcCCEeeccCceeECCCCCCceeeccccCCCCceEEEECCEEEEEEEecc----cccccCC-
Confidence 67998874 5898 99999999998887777778887763 43 2 2579999999999998642 4566765
Q ss_pred ceeeeeEEEEEEecCCCCCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccC------------
Q psy16207 77 SYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPL------------ 144 (258)
Q Consensus 77 ~~~Y~l~q~HfHwG~~~~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~------------ 144 (258)
..+|.|.|||||||++++.||||+|||++|||||||||++. +|.+++||+++++|+|||||||+++.
T Consensus 73 ~~~Y~l~QfHfHwG~~~~~gSEH~idg~~yp~E~HlVH~n~-~y~~~~~A~~~~~glaVl~v~~~~g~~~n~~l~~i~~~ 151 (247)
T cd03150 73 GQEYRALQLHLHWGAAGRPGSEHTVDGHRFPAEIHVVHLST-AFANLDEALGRPGGLAVLAAFLAEGLHENSAYEQLLSR 151 (247)
T ss_pred CCcEEEEEEEEEeCCCCCCCcceeeCCcccchhhheeeecc-cCCCHHHHhcCCCCcEEEEEEEEecCCCCHHHHHHHHH
Confidence 57899999999999999999999999999999999999987 69999999999999999999999972
Q ss_pred -----CCCCeeEecccCccccCCCC-CCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCC
Q psy16207 145 -----SPGGAVEVKHLSIVGLLPET-KYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLG 218 (258)
Q Consensus 145 -----~~g~~~~~~~~~l~~Llp~~-~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~ 218 (258)
.+++...+..|++.+|||.+ ..||+|.||||||||+|+|+|+||++|+.||.+||++||+++.... ...+.
T Consensus 152 l~~i~~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~~l~~~~---~~~l~ 228 (247)
T cd03150 152 LSEISEEESETVVPGLDVSALLPSDLSRYFRYEGSLTTPPCAQGVIWTVFNQTVRLSAKQLHTLSDSLWGPH---DSRLQ 228 (247)
T ss_pred HHhhCCCCceeecCCCCHHHHcCcccCCEEEEeeeccCCCCCCceEEEEeCceeecCHHHHHHHHHHHhccC---CCccc
Confidence 23444556679999999976 5799999999999999999999999999999999999999775322 23588
Q ss_pred CCCCCCCCCCCCeEEEee
Q psy16207 219 NNYRPPQPLHHRPLRTNI 236 (258)
Q Consensus 219 ~N~Rp~Qpln~R~V~~~~ 236 (258)
+|+||+||||||.|+.+|
T Consensus 229 ~N~Rp~Qpln~R~V~~~~ 246 (247)
T cd03150 229 LNFRATQPLNGRKIEASF 246 (247)
T ss_pred CCCCCCCCCCCCeEEeeC
Confidence 999999999999999875
No 11
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=100.00 E-value=1.1e-68 Score=471.74 Aligned_cols=223 Identities=30% Similarity=0.620 Sum_probs=190.9
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecCCCCCeee-ecc--CceeEEEecCceeEEEEcCCCceeEEEeCCCcc
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHI-DKI--RINGGLTNTGHSVVFTVENTTRYHINVTGGPLS 77 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~~~--~~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~ 77 (258)
|++|+. .|+.|+ |++||||||.+..+.+++.+.+|.| .|. ....+|.|+||||+|.+... ..+.|+ +.
T Consensus 2 ~~~W~~---~~~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~i~N~Ghtv~v~~~~~----~~~~~~-~~ 72 (249)
T cd03125 2 ESHWPE---KYPACG-GKRQSPIDIQRREVRFNPSLLQLELVGYEKEQGEFTMTNNGHTVQIDLPPT----MSITTG-DG 72 (249)
T ss_pred CCcccc---cCcCCC-CCCCCCEeEccCceeECCCCCceEeecccCCCccEEEEECCEEEEEEeCCC----cccccC-CC
Confidence 679987 478998 9999999999888777778888887 565 34579999999999998643 234444 45
Q ss_pred eeeeeEEEEEEecCCCC--CCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccC--C--------
Q psy16207 78 YKYQFHELHIHYGLQDN--MGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPL--S-------- 145 (258)
Q Consensus 78 ~~Y~l~q~HfHwG~~~~--~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~--~-------- 145 (258)
.+|+|.|||||||.++. .||||+|||++|||||||||++. +|.++++|..+++|+|||||||+++. .
T Consensus 73 ~~Y~l~q~HFHWG~~~~~~~gSEH~idG~~yp~E~HlVH~n~-~y~~~~~a~~~~~glaVl~v~~~~~~~~~n~~~~~i~ 151 (249)
T cd03125 73 TVYTAVQMHFHWGGRDSEISGSEHTIDGMRYVAELHIVHYNS-KYKSYEEAKDKPDGLAVLAFLYKVGHYAENTYYSDFI 151 (249)
T ss_pred CCEEEEEEEEEecCCCCCCCCccceeccccCCceEEEEEecC-CCCCHHHHhcCCCceEEEEEEEEeccCcCCccHHHHH
Confidence 78999999999999885 79999999999999999999997 79999999999999999999999985 1
Q ss_pred --------CCCeeEecccCccccCCCC-CCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCC
Q psy16207 146 --------PGGAVEVKHLSIVGLLPET-KYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAP 216 (258)
Q Consensus 146 --------~g~~~~~~~~~l~~Llp~~-~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~ 216 (258)
+++...+..|++.+|||.+ .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++... .+.+
T Consensus 152 ~~l~~i~~~~~~~~~~~~~~~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~~~~~~---~~~~ 228 (249)
T cd03125 152 SKLAKIKYAGQTTTLTSLDVRDMLPENLHHYYTYQGSLTTPPCTENVLWFVFDDPVTLSKTQIVKLENTLMDH---HNKT 228 (249)
T ss_pred HHHhhcccCCceeecCCCCHHHhCCcCcCCeEEEeccCcCCCCCCceEEEEeCCceecCHHHHHHHHHHhccc---CCCc
Confidence 1344455679999999976 679999999999999999999999999999999999999866432 2345
Q ss_pred CCCCCCCCCCCCCCeEEEee
Q psy16207 217 LGNNYRPPQPLHHRPLRTNI 236 (258)
Q Consensus 217 ~~~N~Rp~Qpln~R~V~~~~ 236 (258)
+.+|+||+||||||.|+.+|
T Consensus 229 l~~N~Rp~Qpln~R~V~~~~ 248 (249)
T cd03125 229 IRNDYRRTQPLNHRVVEANF 248 (249)
T ss_pred ccCCCCCCCCCCCCeEEeec
Confidence 88999999999999999875
No 12
>KOG0382|consensus
Probab=100.00 E-value=4.3e-68 Score=468.09 Aligned_cols=227 Identities=37% Similarity=0.719 Sum_probs=201.8
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecC-CCCCeeeeccC-ceeEEEecCceeEEEEcCCCceeEEEeCCCcce
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDP-NLRPVHIDKIR-INGGLTNTGHSVVFTVENTTRYHINVTGGPLSY 78 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~-~l~~l~~~~~~-~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~ 78 (258)
|.+|+.+.+ .|+ |++||||||....+.+++ .|.++.+.+.. ....+.|||+++.|.+..... .+.+.||+|..
T Consensus 14 p~~W~~~~~---~~~-g~~QSPIdi~~~~~~~~~~~l~~~~~~~~~~~~~~~~nng~~~~v~~~~~~~-~~~i~gg~l~~ 88 (262)
T KOG0382|consen 14 PEHWGKLYP---EWK-GKRQSPIDIKRSQIVYDPDPLKPLRLSYEYKPCNAVLNNGHSRGVDIMLKGG-KPEITGGPLPG 88 (262)
T ss_pred CccccccCc---CcC-CCccCCccCccceeeecCccccceeeecccCcceEEEeCCceEEEEeecCCC-CcceecCCCCC
Confidence 789998754 577 999999999999999988 77767777654 457899999776666654433 57899999988
Q ss_pred -eeeeEEEEEEecCCCCCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccC-------------
Q psy16207 79 -KYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPL------------- 144 (258)
Q Consensus 79 -~Y~l~q~HfHwG~~~~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~------------- 144 (258)
.|++.|+|||||+.++.||||+|||++|+||||+||+| ++|.+++||+++++|+|||||||++|.
T Consensus 89 ~~y~~~q~hfHWg~~~~~GSEHti~g~~f~~ElHlVH~n-~~y~~~~eA~~~p~GlAVv~vf~k~g~~~n~~l~~l~~~L 167 (262)
T KOG0382|consen 89 IRYRLEQLHFHWGSPDSKGSEHTINGRRFPAELHLVHWN-TKYENFKEALSKPDGLAVVGVFLKIGKEENPFLSKLTDAL 167 (262)
T ss_pred cceeEEEeEeecCCCCCCCCceecCCeecccEEEEEEec-cccCCHHHHhcCCCcEEEEEEeecccCCCChhHHHHHHHh
Confidence 89999999999999999999999999999999999999 799999999999999999999999983
Q ss_pred ----CCCCeeEecccCccccCCC-CCCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCCC
Q psy16207 145 ----SPGGAVEVKHLSIVGLLPE-TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGN 219 (258)
Q Consensus 145 ----~~g~~~~~~~~~l~~Llp~-~~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~~ 219 (258)
++|+.+.+..|++..|||. ..+||+|.||||||||+|+|+|+||++|+.||++||.+||.++....+ .++.+
T Consensus 168 ~~I~~k~~~~~l~~f~~~~llp~~~~~y~tY~GSLTTPPC~E~VtW~V~~~p~~is~~Ql~~~r~l~~~~~~---~~~~~ 244 (262)
T KOG0382|consen 168 KRIKYKGQSTTLPGFDPSELLPKSTRDYYTYEGSLTTPPCSESVTWTVFREPVTVSREQLEKFRNLLFDEEG---EPLVN 244 (262)
T ss_pred hccccCCcccccCCCCHHHhcCccCCceEEEEeeccCCCCCCCEEEEEcCceeecCHHHHHHHHHHhhCccc---ccccc
Confidence 4567777888999999998 899999999999999999999999999999999999999999865443 26889
Q ss_pred CCCCCCCCCCCeEEEee
Q psy16207 220 NYRPPQPLHHRPLRTNI 236 (258)
Q Consensus 220 N~Rp~Qpln~R~V~~~~ 236 (258)
|+||+||||+|.|+.++
T Consensus 245 N~Rp~Qpln~R~V~~~~ 261 (262)
T KOG0382|consen 245 NFRPLQPLNGRVVRASF 261 (262)
T ss_pred cCCcCcCCCCCeEeccc
Confidence 99999999999999886
No 13
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=100.00 E-value=1.2e-66 Score=455.18 Aligned_cols=212 Identities=33% Similarity=0.624 Sum_probs=187.1
Q ss_pred CCCCCCceecCCCceecCCCCCeee-eccC--ceeEEEecCceeEEEEcCCCceeEEEeCCCcceeeeeEEEEEEecCCC
Q psy16207 17 GRRQSPVNLEPSKLLYDPNLRPVHI-DKIR--INGGLTNTGHSVVFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQD 93 (258)
Q Consensus 17 G~~QSPInI~~~~~~~~~~l~~l~~-~~~~--~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~~Y~l~q~HfHwG~~~ 93 (258)
|++||||||.+..+.+++.+.+|.| .|.. ...+|.|+||||+|.+.. .+.+.||+|...|.|.|||||||+.+
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~L~~~~y~~~~~~~~l~N~G~tv~v~~~~----~~~i~gg~L~~~Y~l~qfHfH~G~~~ 76 (234)
T cd03117 1 GKRQSPINIVTKKVQYDENLTPFTFTGYDDTTTNWTITNNGHTVQVTLPD----GAKISGGGLPGTYKALQFHFHWGSNG 76 (234)
T ss_pred CCcCCCEEEcccceEECCCCCcceeccccCCCCceEEEECCeEEEEEecC----CceEeCCCCCCcEEEEEEEEEeCCCC
Confidence 7899999999877777778888888 4653 578999999999999864 47889999999999999999999999
Q ss_pred CCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccCC-----------------CCCeeEecccC
Q psy16207 94 NMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPLS-----------------PGGAVEVKHLS 156 (258)
Q Consensus 94 ~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~~-----------------~g~~~~~~~~~ 156 (258)
..||||+|||++|||||||||++. .|.++++|++.++++|||||||+++.. +++...+..|+
T Consensus 77 ~~gSEH~idg~~~~~E~HlVH~n~-~~~~~~~A~~~~~~laVv~vl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~ 155 (234)
T cd03117 77 SPGSEHTIDGERYPMELHIVHIKE-SYNSLLEALKDSDGLAVLGFFIEEGEEENTNFDPLISALSNIPQKGGSTNLTPFS 155 (234)
T ss_pred CCCCcceeCCeecchheeeeEecC-CCCCHHHHhcCCCceEEEEEEEEecCCCCccHHHHHHHHHhcccCCceeecCCCC
Confidence 999999999999999999999987 699999999999999999999999821 33444566799
Q ss_pred ccccCCCC--CCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCeEEE
Q psy16207 157 IVGLLPET--KYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPLRT 234 (258)
Q Consensus 157 l~~Llp~~--~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp~Qpln~R~V~~ 234 (258)
+.+|||.. ..||+|.||||||||+|+|+|+||++|+.||.+||++||+++....+ ....+.+|+||+||||||.|++
T Consensus 156 ~~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~-~~~~l~~N~Rp~Q~ln~R~v~~ 234 (234)
T cd03117 156 LRSLLPSVLLTKYYRYNGSLTTPGCNEAVIWTVFEEPIPISRAQLDAFSTVLFFDTD-NGQPMVNNFRPVQPLNGRVVYA 234 (234)
T ss_pred HHHHCCCcccCCeEEEeccccCCCCcccEEEEEeCCceecCHHHHHHHHHHhccccc-CCCcccCCCCCCCCCCCCEEeC
Confidence 99999974 68999999999999999999999999999999999999999864332 2356889999999999999974
No 14
>PLN02202 carbonate dehydratase
Probab=100.00 E-value=7.5e-65 Score=453.78 Aligned_cols=219 Identities=27% Similarity=0.474 Sum_probs=185.9
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecCCCCCeeeeccCceeEEEecCceeEEEEcCCCceeEEEeCCCcceee
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGGLTNTGHSVVFTVENTTRYHINVTGGPLSYKY 80 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~~~~~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~~Y 80 (258)
|++|+.|+++|..|++|++||||||.+..+.+++.+.+|.|.|.....+|.|+||||++.+..+. ..+.+.| .+|
T Consensus 39 P~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~~~~~~l~N~Ghtv~v~~~~~~-~~~~~~g----~~Y 113 (284)
T PLN02202 39 PNQWGHLNPHFTKCAVGKLQSPIDIQRRQIFYNHKLESIHRDYYFTNATLVNHVCNVAMFFGEGA-GDVIIDN----KNY 113 (284)
T ss_pred hhhhhhcCcchhhccCCCccCCEeecCCccccCCCCCceeeeccCCceEEEECCccEEEEEcCCC-CeeEECC----cEE
Confidence 78999999999999999999999998877666777888889887777899999999999986432 2344443 589
Q ss_pred eeEEEEEEecCCCCCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccCC---------------
Q psy16207 81 QFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPLS--------------- 145 (258)
Q Consensus 81 ~l~q~HfHwG~~~~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~~--------------- 145 (258)
.|.|||||| ||||+|||++|||||||||++. ++++|||||||+++..
T Consensus 114 ~L~QfHFH~------gSEH~idG~~yp~E~H~VH~~~------------~g~laVlgv~~~~g~~n~~l~~i~~~l~~i~ 175 (284)
T PLN02202 114 TLLQMHWHT------PSEHHLHGVQYAAELHMVHQAK------------DGSFAVVASLFKIGTEEPFLSQMKDKLVKLK 175 (284)
T ss_pred EEEEEEecC------CcccEECCeeCCeEEEEEEEcC------------CCCEEEEEEEEeccCCChHHHHHHHHHHHhh
Confidence 999999999 8999999999999999999874 4689999999999821
Q ss_pred ----CCCe---eEecccCccccCCCCCCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCC
Q psy16207 146 ----PGGA---VEVKHLSIVGLLPETKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLG 218 (258)
Q Consensus 146 ----~g~~---~~~~~~~l~~Llp~~~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~ 218 (258)
+++. ..+..|++..|+|...+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~~~~~-------~l~ 248 (284)
T PLN02202 176 EERFKGNHTAQVEVGKIDTRHIERKTRKYFRYIGSLTTPPCSENVSWTILGKVRSMSKEQVELLRSPLDK-------SFK 248 (284)
T ss_pred cccccCcccccccccccCHHHhCccccceEEEeccccCCCCCCceEEEEeCceEEcCHHHHHHHHHhhhc-------ccC
Confidence 1111 12335899999999999999999999999999999999999999999999999998742 378
Q ss_pred CCCCCCCCCCCCeEEEeeecCccccCCCCCCcc
Q psy16207 219 NNYRPPQPLHHRPLRTNIDFNTKEINGKDCPTM 251 (258)
Q Consensus 219 ~N~Rp~Qpln~R~V~~~~~~~~~~~~~~~~~~~ 251 (258)
+|+||+||||||.|+.+.+...- +++++++-
T Consensus 249 ~N~RpvQplngR~V~~~~~~~~~--~~~~~~~~ 279 (284)
T PLN02202 249 NNSRPCQPLNGRRVEMFHDHERV--DKKDTGNK 279 (284)
T ss_pred CCCCCCCCCCCCEEEEecCeeee--eccccCcc
Confidence 99999999999999999887775 66666554
No 15
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=100.00 E-value=7.6e-64 Score=435.87 Aligned_cols=208 Identities=36% Similarity=0.691 Sum_probs=185.7
Q ss_pred CCCCCCceecCCCceecCCCCCeeeeccC-ceeEEEecCceeEEEEcCCCceeEEEeCCCcceeeeeEEEEEEecCCCCC
Q psy16207 17 GRRQSPVNLEPSKLLYDPNLRPVHIDKIR-INGGLTNTGHSVVFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNM 95 (258)
Q Consensus 17 G~~QSPInI~~~~~~~~~~l~~l~~~~~~-~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~~Y~l~q~HfHwG~~~~~ 95 (258)
|++||||||.+..+.+++.+.+|+|.+.. ...++.|+|||++|.+... ...+.+++|..+|.|.|||||||+.+..
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~l~~~~~~~~~~~i~N~G~tv~~~~~~~---~~~i~~~~l~~~y~l~q~HfH~G~~~~~ 77 (227)
T cd00326 1 GKRQSPINIVTSAVVYDPSLPPLNFDYYPTTSLTLVNNGHTVQVNFDDD---GGTLSGGGLPGRYKLVQFHFHWGSENSP 77 (227)
T ss_pred CCCcCCeEECccceeECCCCCceeecccCCCceEEEECCeeEEEEecCC---CceEeCCCCCCCEEEEEEEEecCCCCCC
Confidence 78999999998777777778889998875 6789999999999999752 2567888888999999999999999999
Q ss_pred CCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEcc-C----------------CCCCeeEecccCcc
Q psy16207 96 GSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFP-L----------------SPGGAVEVKHLSIV 158 (258)
Q Consensus 96 gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~-~----------------~~g~~~~~~~~~l~ 158 (258)
||||+|||++|||||||||++. .|.+. ||..+++++|||||||+++ . .+++...+..+++.
T Consensus 78 gSEH~i~g~~y~~E~H~Vh~~~-~~~~~-~a~~~~~~laVv~v~~~~~~~~n~~l~~i~~~l~~~~~~~~~~~~~~~~l~ 155 (227)
T cd00326 78 GSEHTIDGKRYPLELHLVHYNS-DYYSS-EAAKKPGGLAVLGVFFEVGEKENPFLKKILDALPKIKYKGKETTLPPFDLS 155 (227)
T ss_pred CCcceeCCEeccccceEEEECC-CCCCh-hhhccCCCeEEEEEEEEecccCChhHHHHHHHHHhcCcCCcEeecCCCCHH
Confidence 9999999999999999999987 56666 9999999999999999997 1 23556667789999
Q ss_pred ccCCCC-CCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCeEE
Q psy16207 159 GLLPET-KYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPLR 233 (258)
Q Consensus 159 ~Llp~~-~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp~Qpln~R~V~ 233 (258)
+|||.. .+||+|.||||||||+|+|+|+||++|++||++||+.||.++... ...+.+|+||+|++|||.|+
T Consensus 156 ~llp~~~~~y~~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~f~~l~~~~----~~~~~~N~Rp~Q~ln~R~v~ 227 (227)
T cd00326 156 DLLPSSLRDYYTYEGSLTTPPCSEGVTWIVFKEPITISKEQLEAFRSLLDRE----GKPLVNNYRPVQPLNGRVVY 227 (227)
T ss_pred HHCCCCcCCEEEEeccCcCCCCccceEEEEeCCceecCHHHHHHHHHHHhcC----CCcccCCCCCCCCCCCCeeC
Confidence 999987 999999999999999999999999999999999999999998654 24578999999999999984
No 16
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=100.00 E-value=8.2e-64 Score=432.60 Aligned_cols=199 Identities=32% Similarity=0.629 Sum_probs=175.2
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecCCCCCeeeeccCceeEEEecCceeEEEEcCCCceeEEEeCCCcceee
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGGLTNTGHSVVFTVENTTRYHINVTGGPLSYKY 80 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~~~~~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~~Y 80 (258)
|++|+.++++|+.|++|++||||||.+..+..++ +.+|.|.|....+++.|+||+++|.+..+ ...+.+.| ..|
T Consensus 2 p~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~-~~~l~~~~~~~~~~l~N~G~tv~~~~~~~-~~~~~~~g----~~Y 75 (216)
T cd03124 2 PEHWGNLDPEFALCATGKNQSPIDITTKAVVSDK-LPPLNYNYKPTSATLVNNGHTIQVNFEGN-GGTLTIDG----ETY 75 (216)
T ss_pred CcchhhCCcchhhhcCCCCCCCEeeccCceeecC-CCCceeeccCCceEEEECCceEEEEEcCC-CCeEEECC----cEE
Confidence 7899999999999999999999999987666655 78899988777789999999999999752 22466665 689
Q ss_pred eeEEEEEEecCCCCCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccCC--------------C
Q psy16207 81 QFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPLS--------------P 146 (258)
Q Consensus 81 ~l~q~HfHwG~~~~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~~--------------~ 146 (258)
.|.|||||| ||||+|||++|||||||||++. ++++|||||||+++.. .
T Consensus 76 ~l~q~HfH~------gSEH~idg~~y~~ElH~Vh~~~------------~~~laVl~v~~~~~~~n~~l~~i~~~l~~~~ 137 (216)
T cd03124 76 QLLQFHFHS------PSEHLINGKRYPLEAHLVHKSK------------DGQLAVVAVLFEEGKENPFLKKILDNMPKKE 137 (216)
T ss_pred EEEEEEecC------CcccEeccccCCceeeEEEEcC------------CCCEEEEEEEEeecCCCHHHHHHHHhhhhhc
Confidence 999999999 9999999999999999999875 5789999999999821 1
Q ss_pred CCeeEeccc-CccccCCCCCCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q psy16207 147 GGAVEVKHL-SIVGLLPETKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQ 225 (258)
Q Consensus 147 g~~~~~~~~-~l~~Llp~~~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp~Q 225 (258)
++...+..+ ++.+|||+...||+|.||||||||+|+|+|+||++|+.||++||++||.++ +.+|+||+|
T Consensus 138 ~~~~~~~~~~~~~~llp~~~~y~~Y~GSLTtPpC~E~V~W~V~~~~~~is~~Ql~~f~~~~----------~~~N~Rp~Q 207 (216)
T cd03124 138 GTEVNLPAILDPNELLPESRSYYRYEGSLTTPPCSEGVRWIVLKQPITISKEQLAKFRAAV----------YPNNARPVQ 207 (216)
T ss_pred CCceeccCCCCHHHhcccCCceEEEeeecCCCCCcCceEEEecCCccccCHHHHHHHHHhc----------cCCCCCCCC
Confidence 344455566 999999998999999999999999999999999999999999999999875 358999999
Q ss_pred CCCCCeEE
Q psy16207 226 PLHHRPLR 233 (258)
Q Consensus 226 pln~R~V~ 233 (258)
|||||.|+
T Consensus 208 ~ln~R~v~ 215 (216)
T cd03124 208 PLNGREVL 215 (216)
T ss_pred CCCCceee
Confidence 99999997
No 17
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-62 Score=413.13 Aligned_cols=199 Identities=31% Similarity=0.649 Sum_probs=172.3
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecCCCCCeeeeccCceeEEEecCceeEEEEcCCCceeEEEeCCCcceee
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGGLTNTGHSVVFTVENTTRYHINVTGGPLSYKY 80 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~~~~~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~~Y 80 (258)
|++|+.|+++|..|+.|++||||||....... .+..+.++|.+..++|.||||||++.+..++. .+.+.| ..|
T Consensus 36 PEhWg~L~~df~~C~~Gk~QSPIdI~~~~~~~--~~~~l~~~Y~~s~~~i~nnghTiqv~~~~~~n-~l~~~g----k~y 108 (250)
T COG3338 36 PEHWGELSPDFEACAEGKNQSPIDIEHAVDVQ--DKPPLQLNYQPSAVTIKNNGHTIQVNFEPGSN-HLRYDG----KTY 108 (250)
T ss_pred chhhhhcCchhhHhhccccCCCccHHHheecc--cccchheeeccCceEEEecCcEEEEeccCCCc-ceeecC----cEE
Confidence 89999999999999999999999997653321 34557788888889999999999999986532 345555 689
Q ss_pred eeEEEEEEecCCCCCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccC--------------CC
Q psy16207 81 QFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPL--------------SP 146 (258)
Q Consensus 81 ~l~q~HfHwG~~~~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~--------------~~ 146 (258)
.|.|||||. ||||.|||+.||||+||||-+. .+.|+|+|+|++.|. ..
T Consensus 109 ~L~qfHFH~------PsEhlv~Gk~~pmEaHFVHkd~------------~g~L~Vl~v~~~~g~eN~~l~~l~~~fP~~~ 170 (250)
T COG3338 109 QLVQFHFHA------PSEHLVDGKSFPMEAHFVHKDA------------KGTLAVLAVLLQAGAENPELAPLWEGFPQKP 170 (250)
T ss_pred EEEEEEecC------chHHhhccccccceeeeeecCC------------CCCEEEEEEeeecCCCCcchhHHHHhccccc
Confidence 999999995 9999999999999999999765 478999999999982 23
Q ss_pred CCeeEec-ccCccccCCCCCCcEEEeccccCCCCccceEEeeeceeeecCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q psy16207 147 GGAVEVK-HLSIVGLLPETKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQ 225 (258)
Q Consensus 147 g~~~~~~-~~~l~~Llp~~~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~Is~~Ql~~fr~l~~~~~~~~~~~~~~N~Rp~Q 225 (258)
|....+. .||++.|||+.+.||+|+||||||||+|+|.|+|+++|+.||++|+++|.+++ +.|+||+|
T Consensus 171 ge~~~l~~~id~~~~lP~s~~yyty~GSLTTPPCsEgV~W~Vl~ep~evs~~qi~~f~~~~-----------~~N~RPVQ 239 (250)
T COG3338 171 GEEETLDETIDLNAFLPESRNYYTYNGSLTTPPCSEGVTWIVLKEPIEVSQEQIAEFSKLM-----------GHNARPVQ 239 (250)
T ss_pred ccccceeeccChhHhCccccceEEecccccCCCcccCceEEEEcCcccCCHHHHHHHHHHh-----------CCCCCCCc
Confidence 4443454 49999999999999999999999999999999999999999999999999886 57999999
Q ss_pred CCCCCeEEEe
Q psy16207 226 PLHHRPLRTN 235 (258)
Q Consensus 226 pln~R~V~~~ 235 (258)
|+|+|.|..+
T Consensus 240 p~N~R~I~~~ 249 (250)
T COG3338 240 PLNDRLILEA 249 (250)
T ss_pred CCCCcEEEec
Confidence 9999999764
No 18
>PLN02179 carbonic anhydrase
Probab=100.00 E-value=1.8e-52 Score=364.61 Aligned_cols=170 Identities=22% Similarity=0.470 Sum_probs=140.4
Q ss_pred CCCcCCcCCCCccCCCCCCCCCceecCCCceecCCCCCeeeeccCceeEEEecCceeEEEEcCCCceeEEEeCCCcceee
Q psy16207 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGGLTNTGHSVVFTVENTTRYHINVTGGPLSYKY 80 (258)
Q Consensus 1 P~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~~~~~~~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~~Y 80 (258)
|++|+.++++|..|++|++||||||.+..+..... ..+.+.|.+...+|.|+||||+|.+..+. ..+.+.| ..|
T Consensus 47 p~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~-~~l~~~y~~~~~~i~N~Ghtv~v~~~~~~-~~~~i~g----~~Y 120 (235)
T PLN02179 47 PAEWGKLNPQWKVCSTGKYQSPIDLTDERVSLIHD-QALSRHYKPAPAVIQSRGHDVMVSWKGDA-GKITIHQ----TDY 120 (235)
T ss_pred chhhhhcChhhhhccCCCcCCCEEeeccccccccC-CCcccccCCccEEEEECCeEEEEEecCCC-CeeEecC----cEE
Confidence 78999999999999999999999998765422111 24567777677899999999999986432 2456655 689
Q ss_pred eeEEEEEEecCCCCCCCceeecceecceeEEEEeecccccCCHHHHhhccCceeEEEEEEEccCC--------------C
Q psy16207 81 QFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPLS--------------P 146 (258)
Q Consensus 81 ~l~q~HfHwG~~~~~gSEH~i~G~~~~~E~H~Vh~~~~~y~~~~eA~~~~~g~~vlav~~~~~~~--------------~ 146 (258)
+|.|||||| ||||+|||++|||||||||++. .+++|||||||++|.. .
T Consensus 121 ~L~QfHFH~------gSEH~InG~~yp~E~H~VH~n~------------~g~laVlgvl~~~g~~n~~l~~il~~l~~~~ 182 (235)
T PLN02179 121 KLVQCHWHS------PSEHTINGTSYDLELHMVHTSA------------SGKTAVVGVLYKLGEPDEFLTKLLNGIKGVG 182 (235)
T ss_pred EEEEEEecC------CcceEecccccCeeEEEEEEcC------------CCCeEEEEEEEecCCCCHHHHHHHHhhhccc
Confidence 999999998 9999999999999999999875 4689999999999831 1
Q ss_pred CCeeEecccCccccCCCCCCcEEEeccccCCCCccceEEeeeceeeec
Q psy16207 147 GGAVEVKHLSIVGLLPETKYYMTYDGSITMPACYETVTWIIFNKPIYI 194 (258)
Q Consensus 147 g~~~~~~~~~l~~Llp~~~~yy~Y~GSLTtPPCtE~V~WiV~~~p~~I 194 (258)
++...+..+++.+|+|+...||+|.||||||||+|+|+|+|+++|+-+
T Consensus 183 ~~~~~~~~l~~~~llp~~~~yy~Y~GSLTTPPC~E~V~WiV~~~p~~~ 230 (235)
T PLN02179 183 KKEINLGIVDPRDIRFETNNFYRYIGSLTIPPCTEGVIWTVVKRVVWF 230 (235)
T ss_pred CcceeecccCHHHhCcCCCCEEEEecccCCCCCCCceEEEEecCcEEe
Confidence 222334568899999998999999999999999999999999999854
No 19
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=44.06 E-value=11 Score=26.43 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=12.5
Q ss_pred CCceeecceecceeEE
Q psy16207 96 GSEHVINEYVFPAEIQ 111 (258)
Q Consensus 96 gSEH~i~G~~~~~E~H 111 (258)
--||+|||+.|-++=-
T Consensus 7 kG~h~IdGk~y~v~kD 22 (65)
T PF09211_consen 7 KGEHTIDGKKYYVKKD 22 (65)
T ss_dssp SEEEEETTEEEEESS-
T ss_pred CccEEECCEEEEecCC
Confidence 3599999999988733
No 20
>PHA02614 Major capsid protein VP1; Provisional
Probab=41.06 E-value=49 Score=30.64 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=30.6
Q ss_pred cCccccCCC-----CCCcE-EEeccccCCCC---ccceEEeeec----------eeeecCHHHHHHHH
Q psy16207 155 LSIVGLLPE-----TKYYM-TYDGSITMPAC---YETVTWIIFN----------KPIYITKQQLHGLR 203 (258)
Q Consensus 155 ~~l~~Llp~-----~~~yy-~Y~GSLTtPPC---tE~V~WiV~~----------~p~~Is~~Ql~~fr 203 (258)
+++..+-|+ +..|| +|.|-.+|||- +-.++=+++. +-+.||...+.-|.
T Consensus 200 yPVE~W~PDPskNENtRYFG~~tGG~~TPPVl~ftNt~TTvLLDENGVGpLCkgd~Lyls~aDi~G~~ 267 (363)
T PHA02614 200 YPVECWCPDPSKNENTRYFGTYTGGANTPPVLQFTNTSTTVLLDENGVGPLCKGDGLYLSCADICGFF 267 (363)
T ss_pred cceEeECCCCCcCcCceeeEeecCCCCCCCeEEecCcceEEEEcCCCcccCccCCcEEEEhhhcccce
Confidence 666777763 45777 99999999993 2333333333 34667766655543
No 21
>PF12117 DUF3580: Protein of unknown function (DUF3580); InterPro: IPR021972 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This domain is found in the parvovirus NS1 protein and is about 120 amino acids in length. It is located immediately C-terminal to the helicase domain and its function is not known.
Probab=37.08 E-value=23 Score=27.25 Aligned_cols=26 Identities=35% Similarity=0.777 Sum_probs=19.6
Q ss_pred CCcCCcCCCCc-cCCCCCCCCCceecCC
Q psy16207 2 AFWGLINPEWS-LCNKGRRQSPVNLEPS 28 (258)
Q Consensus 2 ~~W~~l~~~~~-~C~~G~~QSPInI~~~ 28 (258)
.+||++ |+|. .-..-+.|.|||-...
T Consensus 1 ~hWGkV-PdWsE~WaEPk~qtpINs~g~ 27 (120)
T PF12117_consen 1 HHWGKV-PDWSENWAEPKMQTPINSPGS 27 (120)
T ss_pred CCcccC-CChhhccccccccCCcCCccc
Confidence 479997 7885 4445788999998654
No 22
>PF08942 DUF1919: Domain of unknown function (DUF1919); InterPro: IPR015037 This protein has no known function. It is found in various hypothetical and putative bacterial proteins. ; PDB: 2G6T_B.
Probab=30.18 E-value=33 Score=29.40 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=13.2
Q ss_pred cceeEEEEeecccccCCHHHHhh
Q psy16207 106 FPAEIQIFGFNSQLYTNFSEALY 128 (258)
Q Consensus 106 ~~~E~H~Vh~~~~~y~~~~eA~~ 128 (258)
-+.|+||+|+ .+++||..
T Consensus 93 ~dIeihF~HY-----~s~~eA~~ 110 (201)
T PF08942_consen 93 GDIEIHFMHY-----KSFEEAKE 110 (201)
T ss_dssp C-EEEEESS------SSHHHHHH
T ss_pred CCEEEEEEec-----CCHHHHHH
Confidence 5789999995 56889875
No 23
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=22.36 E-value=61 Score=26.73 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=26.1
Q ss_pred EEEeCCCcceeeeeEEEEEEecCCCCCCCceeecce
Q psy16207 69 INVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEY 104 (258)
Q Consensus 69 ~~l~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~i~G~ 104 (258)
+...-|||...|.|.++-.|. .+|.|+|.+-
T Consensus 108 VDt~~GPL~R~~~La~vti~T-----Ass~~~IeaL 138 (161)
T COG3402 108 VDTEQGPLLRRYGLATVTITT-----ASSDHTIEAL 138 (161)
T ss_pred eecccChHHHHhCcceEEEEe-----ccccceeccc
Confidence 445679999999999999998 6888988774
No 24
>PF06255 DUF1020: Protein of unknown function (DUF1020); InterPro: IPR008106 The pathogenic neisseriae are a small group of virulent bacteria that initiate infection at the human host mucosal membranes []. They are Gram-negative cocci and usually exist in pairs. Neisseria gonorrhoeae is passed through sexual transmission and can cause renal failure in extreme cases. The more extreme Neisseria meningitidis is a usually commensal nasopharynx microbe that causes meningococcemia and acute bacterial meningitis, especially in young children and teenagers []. There are several serogroups, of which types A, B and C are the most virulent. Despite recent advances in vaccinology, this pathogen is highly important to research and still poorly understood []. N. meningitidis has many virulence factors, its major determinant being a antiphagocytic polysaccharide capsule that allows the bacterium to evade the host immune response []. Vaccines based on this polysaccharide have proven effective against serogroups A and C meningococci, but serogroup Bstill does not possess an efficient vaccine, and causes the most severe form of meningitis []. It is believed that a conjugate protein vaccine derived from published neisserial genome sequences, rather than one based on polysaccharide, will be the best way of eradicating this disease []. The focus on novel vaccine targets for N. meningitidis has shifted to the adhesins the bacterium secretes to colonise host mucosal epithelia before a serious infection takes hold []. Interaction of these adhesion moleculeswith their cognate host receptors allows bacterial entry to the epithelium,intracellular transport across the host cell, and exit into the bloodstreamon the other side []. Following publication of the complete genome sequence of an N. meningitidis serogroup B strain [], several new adhesins have been identified, including one identical to MafB from N. gonorrhoreae.
Probab=20.26 E-value=65 Score=29.22 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=27.3
Q ss_pred eEEEecCceeEEEEcCCCceeEEEeCCCcceeeeeEEEEEEecCCCCCCCcee
Q psy16207 48 GGLTNTGHSVVFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHV 100 (258)
Q Consensus 48 ~~i~N~G~tv~v~~~~~~~~~~~l~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~ 100 (258)
..+.+.||.+.--|+.-...+-.-.+|.+...|.+.++|+ .|+||-
T Consensus 64 ~rFSgHGhEvHsPFdnhaS~S~s~~~g~v~dGftvyrl~w-------~G~EhH 109 (327)
T PF06255_consen 64 TRFSGHGHEVHSPFDNHASKSDSDEAGSVDDGFTVYRLHW-------TGSEHH 109 (327)
T ss_pred EEecCCCccccCCcccccccchhhhcCCCcCCeEEEEEec-------cccccC
Confidence 4566777776665554332222333455666688887765 499974
Done!