RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16207
(258 letters)
>gnl|CDD|239395 cd03121, alpha_CARP_X_XI_like, Carbonic anhydrase alpha related
protein: groups X, XI and related proteins. This
subgroup contains carbonic anhydrase related proteins
(CARPs) X and XI, which have been implicated in various
biological processes of the central nervous system.
CARPs are sequence similar to carbonic anhydrases.
Carbonic anhydrases are zinc-containing enzymes that
catalyze the reversible hydration of carbon dioxide in a
two-step mechanism. CARPs have lost conserved histidines
involved in zinc binding and consequently their
catalytic activity. CARP XI plays a role in the
development of gastrointestinal stromal tumors.
Length = 256
Score = 330 bits (849), Expect = e-115
Identities = 122/257 (47%), Positives = 169/257 (65%), Gaps = 22/257 (8%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDK-IRINGGLTNTGHSVVF 59
P+FWGL+N W+LC+KGRRQSPV++EPS+LL+DP L P+ ID +++G NTG V F
Sbjct: 2 PSFWGLVNSAWNLCSKGRRQSPVDIEPSRLLFDPFLTPLRIDTGRKVSGTFYNTGRHVSF 61
Query: 60 TVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQL 119
+ +N++GGPLSY+Y+ E+ +H+G +D GSEH +N FP E+Q+ +NS+L
Sbjct: 62 RPDKDP--VVNISGGPLSYRYRLEEIRLHFGREDEQGSEHTVNGQAFPGEVQLIHYNSEL 119
Query: 120 YTNFSEALYRAQGVVAISLLLQFPLSP-------------------GGAVEVKHLSIVGL 160
Y NFSEA G+V +SL ++ + G A ++ LSI L
Sbjct: 120 YPNFSEASKSPNGLVIVSLFVKIGETSNPELRRLTNRDTITSIRYKGDAYFLQDLSIELL 179
Query: 161 LPETKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNN 220
LPET +Y+TY+GS+T P C+ETVTWII NKPIYITK+Q+H LR L Q KAP+ N
Sbjct: 180 LPETDHYITYEGSLTSPGCHETVTWIILNKPIYITKEQMHSLRLLSQNSPSQEKAPMSPN 239
Query: 221 YRPPQPLHHRPLRTNID 237
+RP QPL++RP+RTNI+
Sbjct: 240 FRPVQPLNNRPVRTNIN 256
>gnl|CDD|215000 smart01057, Carb_anhydrase, Eukaryotic-type carbonic anhydrase.
Carbonic anhydrases are zinc metalloenzymes which
catalyse the reversible hydration of carbon dioxide to
bicarbonate.. CAs have essential roles in facilitating
the transport of carbon dioxide and protons in the
intracellular space, across biological membranes and in
the layers of the extracellular space; they are also
involved in many other processes, from respiration and
photosynthesis in eukaryotes to cyanate degradation in
prokaryotes. There are five known evolutionarily
distinct CA families (alpha, beta, gamma, delta and
epsilon) that have no significant sequence identity and
have structurally distinct overall folds. Some CAs are
membrane-bound, while others act in the cytosol; there
are several related proteins that lack enzymatic
activity. The active site of alpha-CAs is well
described, consisting of a zinc ion coordinated through
3 histidine residues and a water molecule/hydroxide ion
that acts as a potent nucleophile. The enzyme employs a
two-step mechanism: in the first step, there is a
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide; in the second step, the active site is
regenerated by the ionisation of the zinc-bound water
molecule and the removal of a proton from the active
site. Beta- and gamma-CAs also employ a zinc hydroxide
mechanism, although at least some beta-class enzymes do
not have water directly coordinated to the metal ion.
Length = 247
Score = 206 bits (525), Expect = 2e-66
Identities = 81/250 (32%), Positives = 130/250 (52%), Gaps = 30/250 (12%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHID-KIRINGGLTNTGHSVVF 59
P WG ++P + G+RQSP+++ ++ YDP+L+P+ + + N GH+V
Sbjct: 9 PEHWGKLDPPFC---GGKRQSPIDIVTAEAQYDPSLKPLKLSYDQPTAKRILNNGHTVQV 65
Query: 60 TVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQL 119
++ ++GGPL +Y+ + H H+G D+ GSEH I+ FP E+ + +NS+
Sbjct: 66 NFDDD---GSTLSGGPLPGRYRLKQFHFHWGGSDSEGSEHTIDGKRFPLELHLVHYNSK- 121
Query: 120 YTNFSEALYRAQGVVAISLLLQ---------------FPL--SPGGAVEVKHLSIVGLLP 162
+FSEA+ + G+ +++ + PL G E+ + LLP
Sbjct: 122 -GSFSEAVSKPGGLAVVAVFFKVGAEENPALQAILDHLPLIKYKGQETELTPFDLSSLLP 180
Query: 163 E-TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNY 221
T++Y TY+GS+T P C E VTWI+F +PI I+ +QL R L+ PL NN
Sbjct: 181 ASTRHYYTYNGSLTTPPCSEGVTWIVFKEPITISTEQLEKFRTLLPM---EGNEPLVNNA 237
Query: 222 RPPQPLHHRP 231
RP QPL+ R
Sbjct: 238 RPLQPLNGRV 247
>gnl|CDD|238200 cd00326, alpha_CA, Carbonic anhydrase alpha (vertebrate-like)
group. Carbonic anhydrases (CAs) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism: a nucleophilic attack
of a zinc-bound hydroxide ion on carbon dioxide,
followed by the regeneration of the active site by
ionization of the zinc-bound water molecule and removal
of a proton from the active site. They are ubiquitous
enzymes involved in fundamental processes like
photosynthesis, respiration, pH homeostasis and ion
transport. There are three evolutionary distinct groups
- alpha, beta and gamma carbonic anhydrases - which show
no significant sequence identity or structural
similarity. Most alpha CAs are monomeric enzymes. The
zinc ion is complexed by three histidine residues and a
fourth conserved histidine plays a potential role in
proton transfer.
Length = 227
Score = 198 bits (505), Expect = 1e-63
Identities = 78/237 (32%), Positives = 123/237 (51%), Gaps = 30/237 (12%)
Query: 17 GRRQSPVNLEPSKLLYDPNLRPVHID-KIRINGGLTNTGHSVVFTVENTTRYHINVTGGP 75
G+RQSP+N+ S ++YDP+L P++ D + L N GH+V ++ ++GG
Sbjct: 1 GKRQSPINIVTSAVVYDPSLPPLNFDYYPTTSLTLVNNGHTVQVNFDDD---GGTLSGGG 57
Query: 76 LSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVA 135
L +Y+ + H H+G +++ GSEH I+ +P E+ + +NS Y+ SEA + G+
Sbjct: 58 LPGRYKLVQFHFHWGSENSPGSEHTIDGKRYPLELHLVHYNSDYYS--SEAAKKPGGLAV 115
Query: 136 ISLLLQF-----------------PLSPGGAVEVKHLSIVGLLPET--KYYMTYDGSITM 176
+ + + G + + LLP + YY TY+GS+T
Sbjct: 116 LGVFFEVGEKENPFLKKILDALPKIKYKGKETTLPPFDLSDLLPSSLRDYY-TYEGSLTT 174
Query: 177 PACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPLR 233
P C E VTWI+F +PI I+K+QL R L+ + K PL NNYRP QPL+ R +
Sbjct: 175 PPCSEGVTWIVFKEPITISKEQLEAFRSLLDREGK----PLVNNYRPVQPLNGRVVY 227
>gnl|CDD|201071 pfam00194, Carb_anhydrase, Eukaryotic-type carbonic anhydrase.
Length = 238
Score = 157 bits (399), Expect = 1e-47
Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 28/242 (11%)
Query: 16 KGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG------LTNTGHSVVFTVENTTRYHI 69
G RQSP+N++ K YDP+L+P+ ++ + N GHS +++ +
Sbjct: 2 NGERQSPINIQTKKAKYDPSLKPL-----SLSYYAATAKEIVNNGHSFQVEFDDSDDKSV 56
Query: 70 NVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYR 129
++GGPL Y+ + H H+G D+ GSEH ++ + AE+ + +NS Y ++ EA +
Sbjct: 57 -LSGGPLPGPYRLKQFHFHWGSSDDHGSEHTVDGKKYAAELHLVHWNSTKYGSYKEAQSQ 115
Query: 130 AQGVVAISLLLQF-PLSPGGAVEVKHLSIV---------------GLLPETKYYMTYDGS 173
G+ + + ++ P +PG V L + LLP + Y TY GS
Sbjct: 116 PDGLAVLGVFVKVGPENPGLQKVVDALDSIKTKGKSATFTNFDPSDLLPSLRDYWTYPGS 175
Query: 174 ITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPLR 233
+T P E+VTWI+ +PI ++ +Q+ R L+ + P+ +NYRP QPL R +R
Sbjct: 176 LTTPPLTESVTWIVLKEPISVSSEQVLKFRSLLFSAEGEEEVPMVDNYRPTQPLKGRVVR 235
Query: 234 TN 235
+
Sbjct: 236 AS 237
>gnl|CDD|239402 cd03149, alpha_CA_VII, Carbonic anhydrase alpha, CA isozyme
VII_like subgroup. Carbonic anhydrases (CAs) are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism: a
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. Most alpha CAs are
monomeric enzymes. The zinc ion is complexed by three
histidines. This vertebrate subgroup comprises isozyme
VII. CA VII is the most active cytosolic enzyme after CA
II, and may be highly expressed in the brain. Human CA
VII may be a target of antiepileptic
sulfonamides/sulfamates.
Length = 236
Score = 148 bits (376), Expect = 3e-44
Identities = 70/234 (29%), Positives = 123/234 (52%), Gaps = 18/234 (7%)
Query: 17 GRRQSPVNLEPSKLLYDPNLRPVHIDKIRING-GLTNTGHSVVFTVENTTRYHINVTGGP 75
G RQSP+++ S+ +YDP L+P+ + ++N GHSV+ +++ + +TGGP
Sbjct: 1 GNRQSPIDIVSSEAVYDPKLKPLSLSYDPCTSLSISNNGHSVMVEFDDSDDKTV-ITGGP 59
Query: 76 LSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVA 135
L Y+ + H H+G + GSEH ++ FP+E+ + +N++ Y +F EA G+
Sbjct: 60 LENPYRLKQFHFHWGAKHGSGSEHTVDGKTFPSELHLVHWNAKKYKSFGEAAAAPDGLAV 119
Query: 136 ISLLLQ----------------FPLSPGGAVEVKHLSIVGLLPETKYYMTYDGSITMPAC 179
+ + L+ G + + LLP++ Y TY GS+T P
Sbjct: 120 LGVFLETGDEHPGLNRLTDALYMVRFKGTKAQFLDFNPKCLLPKSLDYWTYPGSLTTPPL 179
Query: 180 YETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPLR 233
E+VTWI+ +PI ++++Q+ R+L+ + + + NN+RPPQPL R +R
Sbjct: 180 NESVTWIVLKEPIPVSEKQMGKFRELLFTSEEDQRNHMVNNFRPPQPLKGRTVR 233
>gnl|CDD|239397 cd03123, alpha_CA_VI_IX_XII_XIV, Carbonic anhydrase alpha, isozymes
VI, IX, XII and XIV. Carbonic anhydrases (CAs) are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism: a
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionary distinct groups - alpha, beta and gamma
carbonic anhydrases - which show no significant sequence
identity or structural similarity. Alpha CAs are mostly
monomeric enzymes. The zinc ion is complexed by three
histidine residues. This sub-family comprises the
secreted CA VI, which is found in saliva, for example,
and the membrane proteins CA IX, XII, and XIV.
Length = 248
Score = 144 bits (366), Expect = 1e-42
Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 31/237 (13%)
Query: 17 GRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG----LTNTGHSVVFTVENTTRYHINVT 72
G+RQSP++++ + +DP+L P+ + + G LTN GH+V ++ T +
Sbjct: 14 GKRQSPIDIQTDIVQFDPSLPPLELVGYDLPGTEEFTLTNNGHTVQLSLPPTMH----IR 69
Query: 73 GGPLSYKYQFHELHIHYGLQDNM-GSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQ 131
GGP +Y +LH+H+G + ++ GSEH I+ F AE+ I +NS Y++F EA +
Sbjct: 70 GGP-GTEYTAAQLHLHWGGRGSLSGSEHTIDGIRFAAELHIVHYNSDKYSSFDEAADKPD 128
Query: 132 GVVAISLLLQFPLS-----------------PGGAVEVKHLSIVGLLPE-TKYYMTYDGS 173
G+ +++L++ G V ++ LLPE +Y Y+GS
Sbjct: 129 GLAVLAILIEVGYPENTYYEKIISHLHEIKYKGQETTVPGFNVRELLPEDLSHYYRYEGS 188
Query: 174 ITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHR 230
+T P CYE+V W +F P+ ++K+QL L + M L NNYR QPL+ R
Sbjct: 189 LTTPPCYESVLWTVFRDPVTLSKEQLETLENTL---MDTHNKTLQNNYRATQPLNGR 242
>gnl|CDD|239393 cd03119, alpha_CA_I_II_III_XIII, Carbonic anhydrase alpha, isozymes
I, II, and III and XIII. Carbonic anhydrases (CAs) are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism: a
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. Most alpha CAs are
monomeric enzymes. The zinc ion is complexed by three
histidines. This vertebrate subgroup comprises isozymes
I, II, and III, which are cytoplasmic enzymes. CA I, for
example, is expressed in erythrocyes of many
vertebrates; CA II is the most active cytosolic isozyme;
while it is being expressed nearly ubiquitously, it
comprises 95% of the renal carbonic anhydrase and is
required for renal acidification; CA III has been
implicated in protection from the damaging effect of
oxidizing agents in hepatocytes. CAXIII may play
important physiological roles in several organs.
Length = 259
Score = 144 bits (364), Expect = 4e-42
Identities = 72/238 (30%), Positives = 121/238 (50%), Gaps = 25/238 (10%)
Query: 16 KGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG----LTNTGHSVVFTVENTTRYHINV 71
KG RQSP++++ +DP+L+P+ + + + N GHS ++T + +
Sbjct: 24 KGDRQSPIDIKTKDAKHDPSLKPLSVS---YDPATAKTILNNGHSFNVEFDDTDDRSV-L 79
Query: 72 TGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQ 131
GGPL+ Y+ + H H+G D+ GSEH ++ + AE+ + +NS+ Y +F EA +
Sbjct: 80 RGGPLTGSYRLRQFHFHWGSSDDHGSEHTVDGVKYAAELHLVHWNSK-YGSFGEAAKQPD 138
Query: 132 GVVAISLLL---------QFPLSPGGAVEVK-------HLSIVGLLPETKYYMTYDGSIT 175
G+ + + L Q L +++ K + LLP + Y TY GS+T
Sbjct: 139 GLAVVGVFLKVGEANPELQKVLDALDSIKTKGKQAPFTNFDPSCLLPASLDYWTYPGSLT 198
Query: 176 MPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPLR 233
P E VTWI+ +PI ++ +Q+ R L+ P P+ +N+RPPQPL R +R
Sbjct: 199 TPPLLECVTWIVLKEPISVSSEQMAKFRSLLFNAEGEPPCPMVDNWRPPQPLKGRKVR 256
>gnl|CDD|239391 cd03117, alpha_CA_IV_XV_like, Carbonic anhydrase alpha, CA_IV,
CA_XV, like isozymes. Carbonic anhydrases (CAs) are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism: a
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionary distinct groups - alpha, beta and gamma
carbonic anhydrases - which show no significant sequence
identity or structural similarity. Most alpha CAs are
monomeric enzymes. The zinc ion is complexed by three
histidine residues. This subgroup, restricted to
animals, contains isozyme IV and similar proteins such
as mouse CA XV. Isozymes IV is attached to membranes via
a glycosylphosphatidylinositol (GPI) tail. In mammals,
Isozyme IV plays crucial roles in kidney and lung
function, amongst others. This subgroup also contains
the dual domain CA from the giant clam, Tridacna gigas.
T. gigas CA plays a role in the movement of inorganic
carbon from the surrounding seawater to the symbiotic
algae found in the clam's tissues. CA XV is expressed in
several species but not in humans or chimps. Similar to
isozyme CA IV, CA XV attaches to membranes via a GPI
tail.
Length = 234
Score = 142 bits (359), Expect = 2e-41
Identities = 79/240 (32%), Positives = 117/240 (48%), Gaps = 32/240 (13%)
Query: 17 GRRQSPVNLEPSKLLYDPNLRPVHI---DKIRINGGLTNTGHSVVFTVENTTRYHINVTG 73
G+RQSP+N+ K+ YD NL P D N +TN GH+V T+ + + ++G
Sbjct: 1 GKRQSPINIVTKKVQYDENLTPFTFTGYDDTTTNWTITNNGHTVQVTLPDGAK----ISG 56
Query: 74 GPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGV 133
G L Y+ + H H+G + GSEH I+ +P E+ I Y + EAL + G+
Sbjct: 57 GGLPGTYKALQFHFHWGSNGSPGSEHTIDGERYPMELHIVHIKES-YNSLLEALKDSDGL 115
Query: 134 VA------------------ISLLLQFPLSPGGAVEVKHLSIVGLLPE---TKYYMTYDG 172
IS L P GG+ + S+ LLP TKYY Y+G
Sbjct: 116 AVLGFFIEEGEEENTNFDPLISALSNIP-QKGGSTNLTPFSLRSLLPSVLLTKYY-RYNG 173
Query: 173 SITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPL 232
S+T P C E V W +F +PI I++ QL ++ D + + P+ NN+RP QPL+ R +
Sbjct: 174 SLTTPGCNEAVIWTVFEEPIPISRAQLDAFSTVLFFDTDNGQ-PMVNNFRPVQPLNGRVV 232
>gnl|CDD|239398 cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha,
prokaryotic-like subfamily. Carbonic anhydrases (CAs)
are zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism: a
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. Most alpha CAs are
monomeric enzymes. The zinc ion is complexed by three
histidines. This sub-family includes bacterial carbonic
anhydrase alpha, as well as plant enzymes such as
tobacco nectarin III and yam dioscorin and, carbonic
anhydrases from molluscs, such as nacrein, which are
part of the organic matrix layer in shells. Other
members of this family may be involved in maintaining pH
balance, in facilitating transport of carbon dioxide or
carbonic acid, or in sensing carbon dioxide levels in
the environment. Dioscorin is the major storage protein
of yam tubers and may play a role as an antioxidant.
Tobacco Nectarin may play a role in the maintenace of pH
and oxidative balance in nectar. Mollusc nacrein may
participate in calcium carbonate crystal formation of
the nacreous layer. This subfamily also includes three
alpha carbonic anhydrases from Chlamydomonas reinhardtii
(CAH 1-3). CAHs1-2 are localized in the periplasmic
space. CAH1 faciliates the movement of carbon dioxide
across the plasma membrane when the medium is alkaline.
CAH3 is localized to the thylakoid lumen and provides
CO2 to Rubisco.
Length = 216
Score = 137 bits (348), Expect = 4e-40
Identities = 70/245 (28%), Positives = 107/245 (43%), Gaps = 47/245 (19%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGGLTNTGHSVVFT 60
P WG ++PE++LC G+ QSP+++ ++ D L P++ + + L N GH++
Sbjct: 2 PEHWGNLDPEFALCATGKNQSPIDITTKAVVSDK-LPPLNYNYKPTSATLVNNGHTIQVN 60
Query: 61 VENTTRY-HINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQL 119
E I+ YQ + H H SEH+IN +P E + +
Sbjct: 61 FEGNGGTLTIDGE------TYQLLQFHFH------SPSEHLINGKRYPLEAHL------V 102
Query: 120 YTNFSEALYRAQGVVAI------------SLLLQFPLSPGGAVEVK-HLSIVGLLPETKY 166
+ + L VVA+ +L P G V + L LLPE++
Sbjct: 103 HKSKDGQL----AVVAVLFEEGKENPFLKKILDNMPKKEGTEVNLPAILDPNELLPESRS 158
Query: 167 YMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQP 226
Y Y+GS+T P C E V WI+ +PI I+K+QL R + NN RP QP
Sbjct: 159 YYRYEGSLTTPPCSEGVRWIVLKQPITISKEQLAKFRAAV----------YPNNARPVQP 208
Query: 227 LHHRP 231
L+ R
Sbjct: 209 LNGRE 213
>gnl|CDD|239396 cd03122, alpha_CARP_receptor_like, Carbonic anhydrase alpha related
protein, receptor_like subfamily. Carbonic anhydrase
related proteins (CARPs) are sequence similar to
carbonic anhydrases. Carbonic anhydrases are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism.
CARPs have lost conserved histidines involved in zinc
binding and consequently their catalytic activity. This
sub-family of carbonic anhydrase-related domains found
in tyrosine phosphatase receptors may play a role in
cell adhesion.
Length = 253
Score = 137 bits (347), Expect = 1e-39
Identities = 82/254 (32%), Positives = 126/254 (49%), Gaps = 30/254 (11%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPS---KLLYDPNLRPVHIDKIRINGGLTNTGHSV 57
P W P C +GR+QSP+++ + L +++ + L NTG +V
Sbjct: 2 PKHWAKKYPA---CGEGRQQSPIDIVEDTQVQRQGLQPLHFDGYEELTASTTLENTGKTV 58
Query: 58 VFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNS 117
+ +E + V+GGPL +Y+F E+ H+G ++ GSEH I+ + FP E+QI N+
Sbjct: 59 ILRLEGNSS-DPFVSGGPLLGRYKFSEITFHWGTCNSDGSEHSIDGHKFPLEMQILHRNT 117
Query: 118 QLYTNFSEALYRAQGVVAISLLLQF------PLSP-----------GGAVEVKHLSIVGL 160
+ +F EA+ GV+A++ L + L P G VE+ + L
Sbjct: 118 DFFDSF-EAIKSPGGVLALAYLFELSHEDNPFLDPIIEGLRNVSRPGKEVELPPFPLSDL 176
Query: 161 LP--ETKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKA--P 216
LP KYY Y+GS+T P C ETV WI+F +P+ I+ +QL R+L+ +
Sbjct: 177 LPPFTDKYYS-YEGSLTTPPCSETVEWIVFREPVPISSRQLEAFRELLTRRQDGVMSGDY 235
Query: 217 LGNNYRPPQPLHHR 230
L NN RP QPL R
Sbjct: 236 LPNNGRPQQPLGSR 249
>gnl|CDD|239392 cd03118, alpha_CA_V, Carbonic anhydrase alpha, CA isozyme V_like
subgroup. Carbonic anhydrases (CAs) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism: a nucleophilic attack
of a zinc-bound hydroxide ion on carbon dioxide,
followed by the regeneration of the active site by
ionization of the zinc-bound water molecule and removal
of a proton from the active site. They are ubiquitous
enzymes involved in fundamental processes like
photosynthesis, respiration, pH homeostasis and ion
transport. Most alpha CAs are monomeric enzymes. The
zinc ion is complexed by three histidines. This
vertebrate subgroup comprises isozyme V. CA V is the
mitochondrial isozyme, which may play a role in
gluconeogenesis and ureagenesis and possibly also in
lipogenesis.
Length = 236
Score = 136 bits (345), Expect = 2e-39
Identities = 74/241 (30%), Positives = 118/241 (48%), Gaps = 28/241 (11%)
Query: 17 GRRQSPVNLEPSKLLYDPNLRPVHID-KIRINGGLTNTGHSVVFTVENTTRYHINVTGGP 75
G RQSP+N++ +YDP L P+ + + N G+S +++T ++GGP
Sbjct: 1 GTRQSPINIQWRDSVYDPQLAPLRVSYDPATCLYIWNNGYSFQVEFDDSTDKSG-ISGGP 59
Query: 76 LSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVA 135
L Y+ + H H+G + GSEH ++ + +PAE+ + +NS Y NF EA+ G+
Sbjct: 60 LENHYRLKQFHFHWGANNEWGSEHTVDGHTYPAELHLVHWNSVKYENFEEAVMEENGLAV 119
Query: 136 ISLLLQFPLSPGGAVEVKHLSIVGLLPETKY---------------------YMTYDGSI 174
I + L+ GA +V LPE ++ Y TY GS+
Sbjct: 120 IGVFLKL-----GAHHEGLQKLVDALPEVRHKDTVVEFNPFDPSCLLPACRDYWTYPGSL 174
Query: 175 TMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPLRT 234
T P E+VTWII +PI ++ QL R L+ + + NN+RP QPL +R +R+
Sbjct: 175 TTPPLTESVTWIIQKQPIEVSPSQLSVFRTLLFTSRGEEEKVMVNNFRPLQPLMNRKVRS 234
Query: 235 N 235
+
Sbjct: 235 S 235
>gnl|CDD|239394 cd03120, alpha_CARP_VIII, Carbonic anhydrase alpha related protein,
group VIII. Carbonic anhydrase related proteins (CARPs)
are sequence similar to carbonic anhydrases. Carbonic
anhydrases are zinc-containing enzymes that catalyze the
reversible hydration of carbon dioxide in a two-step
mechanism. CARPs have lost conserved histidines involved
in zinc binding and consequently their catalytic
activity. CARP VIII may play roles in various biological
processes of the central nervous system, and could be
involved in protein-protein interactions. CARP VIII has
been shown to bind inositol 1,4,5-triphosphate (IP3)
receptor type I (IP3RI), reducing the affinity of the
receptor for IP3. IP3RI is an intracellular IP3-gated
Ca2+ channel located on intracellular Ca2+ stores. IP3RI
converts IP3 signaling into Ca2+ signaling thereby
participating in a variety of cell functions.
Length = 256
Score = 125 bits (315), Expect = 6e-35
Identities = 80/258 (31%), Positives = 131/258 (50%), Gaps = 36/258 (13%)
Query: 4 WGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRI---NGGLTNTGHSVVFT 60
WGL+ PE G QSP+NL + YDP+L V + + + + N GH T
Sbjct: 4 WGLLFPE----ANGEYQSPINLNSREARYDPSLLEVRLSPNYVVCRDCEVINDGH----T 55
Query: 61 VENTTRYHINVTGGPL--SYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQ 118
++ + ++GGPL ++++ E+ H+G ++ GSEH +N FP E+ + +NS
Sbjct: 56 IQIILKSKSVLSGGPLPQGHEFELAEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNST 115
Query: 119 LYTNFSEALYRAQGVVAISLLLQFPLSPGG---------AVEVKHLSIV-------GLLP 162
LY++ EA+ + G+ I+L +Q G ++ K S LLP
Sbjct: 116 LYSSLEEAMGKPHGIAIIALFVQIGKEHVGLKAVTEILQDIQYKGKSKTIPCFNPNTLLP 175
Query: 163 ET--KYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKL---MQGD--MKHPKA 215
+ + Y Y+GS+T P C E VTWI+F P+ I++ Q+ R+L ++G ++
Sbjct: 176 DPLLRDYWVYEGSLTTPPCSEGVTWILFRYPLTISQSQIEEFRRLRTHVKGAELVEGCDG 235
Query: 216 PLGNNYRPPQPLHHRPLR 233
LG+N+RP QPL R +R
Sbjct: 236 LLGDNFRPTQPLSDRVIR 253
>gnl|CDD|239400 cd03126, alpha_CA_XII_XIV, Carbonic anhydrase alpha, isozymes XII
and XIV. Carbonic anhydrases (CAs) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism: a nucleophilic attack
of a zinc-bound hydroxide ion on carbon dioxide,
followed by the regeneration of the active site by
ionization of the zinc-bound water molecule and removal
of a proton from the active site. They are ubiquitous
enzymes involved in fundamental processes like
photosynthesis, respiration, pH homeostasis and ion
transport. There are three evolutionary distinct groups
- alpha, beta and gamma carbonic anhydrases - which show
no significant sequence identity or structural
similarity. Most alpha CAs are monomeric enzymes. The
zinc ion is complexed by three histidine residues. This
sub-family comprises the membrane proteins CA XII and
XIV.
Length = 249
Score = 123 bits (309), Expect = 5e-34
Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 28/236 (11%)
Query: 17 GRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG----LTNTGHSVVFTVENTTRYHINVT 72
G QSP+++ L YD +L P+ ++G LTN GH+V ++ T HI
Sbjct: 14 GVAQSPIDIHTDILQYDSSLPPLEFHGYNVSGTEQFTLTNNGHTVQLSLPPTM--HI--- 68
Query: 73 GGPLSYKYQFHELHIHYGLQ-DNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQ 131
G L +KY +LH+H+G + GSEH I+ F AE+ I +NS Y + S A+ ++Q
Sbjct: 69 -GGLPFKYTASQLHLHWGQRGSPEGSEHTISGKHFAAELHIVHYNSDKYPDISTAMNKSQ 127
Query: 132 GVVAISLLLQF-PLSP---------------GGAVEVKHLSIVGLLPE-TKYYMTYDGSI 174
G+ + +L++ P +P V V ++ LLP+ Y Y+GS+
Sbjct: 128 GLAVLGILIEVGPFNPSYEKIFSHLHEVKYKDQKVSVPGFNVQELLPKRLDEYYRYEGSL 187
Query: 175 TMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHR 230
T P CY +V W +F P+ I+++QL L + + + NNYR QP + R
Sbjct: 188 TTPPCYPSVLWTVFRNPVQISQEQLLALETALYSTEEDESREMVNNYRQVQPFNER 243
>gnl|CDD|239403 cd03150, alpha_CA_IX, Carbonic anhydrase alpha, isozyme IX.
Carbonic anhydrases (CAs) are zinc-containing enzymes
that catalyze the reversible hydration of carbon dioxide
in a two-step mechanism: a nucleophilic attack of a
zinc-bound hydroxide ion on carbon dioxide, followed by
the regeneration of the active site by ionization of the
zinc-bound water molecule and removal of a proton from
the active site. They are ubiquitous enzymes involved in
fundamental processes like photosynthesis, respiration,
pH homeostasis and ion transport. There are three
evolutionary distinct groups - alpha, beta and gamma
carbonic anhydrases - which show no significant sequence
identity or structural similarity. Alpha CAs are
strictly monomeric enzymes. The zinc ion is complexed by
three histidine residues. This sub-family comprises the
membrane protein CA IX. CA IX is functionally implicated
in tumor growth and survival. CA IX is mainly present in
solid tumors and its expression in normal tissues is
limited to the mucosa of alimentary tract. CA IX is a
transmembrane protein with two extracellular domains:
carbonic anhydrase and, a proteoglycan-like segment
mediating cell-cell adhesion. There is evidence for an
involvement of the MAPK pathway in the regulation of CA9
expression.
Length = 247
Score = 121 bits (304), Expect = 2e-33
Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 31/236 (13%)
Query: 17 GRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG----LTNTGHSVVFTVENTTRYHINVT 72
GR QSPV++ P + + P LRP+ + + L N GH+V ++ + R +
Sbjct: 14 GRFQSPVDIRPHLVAFCPALRPLELLGFDLPPSPSLRLLNNGHTVQLSLPSGLRMAL--- 70
Query: 73 GGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQG 132
GP +Y+ +LH+H+G GSEH ++ + FPAEI + ++ + N EAL R G
Sbjct: 71 -GP-GQEYRALQLHLHWGAAGRPGSEHTVDGHRFPAEIHVVHLSTA-FANLDEALGRPGG 127
Query: 133 VVAISLLLQFPLSPGGAVE-----------------VKHLSIVGLLPET-KYYMTYDGSI 174
+ ++ L L A E V L + LLP Y Y+GS+
Sbjct: 128 LAVLAAFLAEGLHENSAYEQLLSRLSEISEEESETVVPGLDVSALLPSDLSRYFRYEGSL 187
Query: 175 TMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHR 230
T P C + V W +FN+ + ++ +QLH L + G H L N+R QPL+ R
Sbjct: 188 TTPPCAQGVIWTVFNQTVRLSAKQLHTLSDSLWGP--HDSR-LQLNFRATQPLNGR 240
>gnl|CDD|239399 cd03125, alpha_CA_VI, Carbonic anhydrase alpha, isozyme VI.
Carbonic anhydrases (CAs) are zinc-containing enzymes
that catalyze the reversible hydration of carbon dioxide
in a two-step mechanism: a nucleophilic attack of a
zinc-bound hydroxide ion on carbon dioxide, followed by
the regeneration of the active site by ionization of the
zinc-bound water molecule and removal of a proton from
the active site. They are ubiquitous enzymes involved in
fundamental processes like photosynthesis, respiration,
pH homeostasis and ion transport. There are three
evolutionary distinct groups - alpha, beta and gamma
carbonic anhydrases - which show no significant sequence
identity or structural similarity. Most alpha CAs are
monomeric enzymes. The zinc ion is complexed by three
histidine residues. This sub-family comprises the
secreted CA VI, which is found in saliva.
Length = 249
Score = 108 bits (272), Expect = 1e-28
Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 33/243 (13%)
Query: 17 GRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG---LTNTGHSVVFTVENTTRYHINVTG 73
G+RQSP++++ ++ ++P+L + + G +TN GH+V + T +T
Sbjct: 14 GKRQSPIDIQRREVRFNPSLLQLELVGYEKEQGEFTMTNNGHTVQIDLPPTMS----ITT 69
Query: 74 GPLSYKYQFHELHIHYGLQDN--MGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQ 131
G Y ++H H+G +D+ GSEH I+ + AE+ I +NS+ Y ++ EA +
Sbjct: 70 G-DGTVYTAVQMHFHWGGRDSEISGSEHTIDGMRYVAELHIVHYNSK-YKSYEEAKDKPD 127
Query: 132 GVVAISLL------------------LQFPLSPGGAVEVKHLSIVGLLPET-KYYMTYDG 172
G+ ++ L L G + L + +LPE +Y TY G
Sbjct: 128 GLAVLAFLYKVGHYAENTYYSDFISKLAKIKYAGQTTTLTSLDVRDMLPENLHHYYTYQG 187
Query: 173 SITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPL 232
S+T P C E V W +F+ P+ ++K Q + KL M H + N+YR QPL+HR +
Sbjct: 188 SLTTPPCTENVLWFVFDDPVTLSKTQ---IVKLENTLMDHHNKTIRNDYRRTQPLNHRVV 244
Query: 233 RTN 235
N
Sbjct: 245 EAN 247
>gnl|CDD|225875 COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and
metabolism].
Length = 250
Score = 85.6 bits (212), Expect = 6e-20
Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 29/234 (12%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGGLTNTGHSV-VF 59
P WG ++P++ C +G+ QSP+++E + + D P+ ++ + N GH++ V
Sbjct: 36 PEHWGELSPDFEACAEGKNQSPIDIEHAVDVQD--KPPLQLNYQPSAVTIKNNGHTIQVN 93
Query: 60 TVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQL 119
+ H+ G YQ + H H SEH+++ FP E +++
Sbjct: 94 FEPGSN--HLRYDG----KTYQLVQFHFH------APSEHLVDGKSFPMEAHFVHKDAKG 141
Query: 120 YTNFSEALYR--AQGVVAISLLLQFPLSPGGAVEVK-HLSIVGLLPETKYYMTYDGSITM 176
L + A+ L FP PG + + + LPE++ Y TY+GS+T
Sbjct: 142 TLAVLAVLLQAGAENPELAPLWEGFPQKPGEEETLDETIDLNAFLPESRNYYTYNGSLTT 201
Query: 177 PACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHR 230
P C E VTWI+ +PI ++++Q+ KLM G+N RP QPL+ R
Sbjct: 202 PPCSEGVTWIVLKEPIEVSQEQIAEFSKLM-----------GHNARPVQPLNDR 244
>gnl|CDD|177853 PLN02202, PLN02202, carbonate dehydratase.
Length = 284
Score = 73.6 bits (180), Expect = 2e-15
Identities = 65/257 (25%), Positives = 113/257 (43%), Gaps = 30/257 (11%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGGLTNTGHSVVFT 60
P WG +NP ++ C G+ QSP++++ ++ Y+ L +H D N L N
Sbjct: 39 PNQWGHLNPHFTKCAVGKLQSPIDIQRRQIFYNHKLESIHRDYYFTNATLVNH------- 91
Query: 61 VENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQI-------- 112
V N + G + + L +H+ + SEH ++ + AE+ +
Sbjct: 92 VCNVAMFFGEGAGDVIIDNKNYTLLQMHW----HTPSEHHLHGVQYAAELHMVHQAKDGS 147
Query: 113 FGFNSQLYTNFSEALYRAQGVVAISLLLQ--FPLSPGGAVEVKHLSIVGLLPETKYYMTY 170
F + L+ +E + +Q + L + F + VEV + + +T+ Y Y
Sbjct: 148 FAVVASLFKIGTEEPFLSQMKDKLVKLKEERFKGNHTAQVEVGKIDTRHIERKTRKYFRY 207
Query: 171 DGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHR 230
GS+T P C E V+W I K ++K+Q+ LR + K NN RP QPL+ R
Sbjct: 208 IGSLTTPPCSENVSWTILGKVRSMSKEQVELLRSPLDKSFK-------NNSRPCQPLNGR 260
Query: 231 PLRTNIDFNTKEINGKD 247
R + + + ++ KD
Sbjct: 261 --RVEMFHDHERVDKKD 275
>gnl|CDD|177835 PLN02179, PLN02179, carbonic anhydrase.
Length = 235
Score = 53.1 bits (127), Expect = 2e-08
Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 26/201 (12%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNL--EPSKLLYDPNLRPVHIDKIRINGGLTNTGHSVV 58
PA WG +NP+W +C+ G+ QSP++L E L++D L + + + + GH V+
Sbjct: 47 PAEWGKLNPQWKVCSTGKYQSPIDLTDERVSLIHDQALSRHYKPAPAV---IQSRGHDVM 103
Query: 59 FT-VENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNS 117
+ + + I+ T Y+ + H H SEH IN + E+ + ++
Sbjct: 104 VSWKGDAGKITIHQT------DYKLVQCHWH------SPSEHTINGTSYDLELHMVHTSA 151
Query: 118 QLYTNFSEALYRAQGVVAISLLLQFPLSPGGAVEVKHLSIVGLLP-----ETKYYMTYDG 172
T LY+ + L L+ V K +++ + P ET + Y G
Sbjct: 152 SGKTAVVGVLYK---LGEPDEFLTKLLNGIKGVGKKEINLGIVDPRDIRFETNNFYRYIG 208
Query: 173 SITMPACYETVTWIIFNKPIY 193
S+T+P C E V W + + ++
Sbjct: 209 SLTIPPCTEGVIWTVVKRVVW 229
>gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation
factor [Translation, ribosomal structure and
biogenesis].
Length = 447
Score = 30.4 bits (69), Expect = 1.1
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 60 TVENTTRYHINVTGGPLSYKYQFHE---LHIHYGLQ--DNMGSEHVINEY-VFPAEIQIF 113
+E TTR + + PL +K + +HIH GL+ N I +
Sbjct: 257 PLEVTTRLIVELEIDPL-FKKTLKQGQPVHIHVGLRSVTGRIVPLEKNAELNLVKPIAL- 314
Query: 114 GFNSQLYTNFSEALYRAQGVVAISLLLQFPLSPGGAVEVKHLS 156
G N +L + A+ + G +SL L G ++V L+
Sbjct: 315 GDNDRLVLRDNSAVIKLAGARVLSLNLPLRPRRLGYLKVLDLA 357
>gnl|CDD|183395 PRK12275, PRK12275, hypothetical protein; Reviewed.
Length = 116
Score = 28.3 bits (64), Expect = 1.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 173 SITMPACYETVTWIIFNKPI-YITKQQLHGLRKL 205
I + + E T + K + YITK+Q + +
Sbjct: 67 YIALGSLAELETQLYIAKELGYITKEQYESILQE 100
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 29.9 bits (67), Expect = 1.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 199 LHGLRKLMQGDMKHPKAPLGNNY----RPPQPLHHRPLRTNIDFNTKEING 245
L+GL + + + K P + Y PP PLH LRT + + I+G
Sbjct: 107 LNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDG 157
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 29.5 bits (66), Expect = 1.8
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 214 KAPLGNN----YRPPQ--PLHHRPLRTNIDFNTKEING 245
K LG + + PQ PL R + T +D ING
Sbjct: 111 KGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAING 148
>gnl|CDD|149921 pfam09014, Sushi_2, Beta-2-glycoprotein-1 fifth domain. The fifth
domain of beta-2-glycoprotein-1 (b2GP-1) is composed of
four well-defined anti-parallel beta-strands and two
short alpha-helices, as well as a long highly flexible
loop. It plays an important role in the binding of
b2GP-1 to negatively charged compounds and subsequent
capture for binding of anti-b2GP-1 antibodies.
Length = 85
Score = 27.5 bits (61), Expect = 2.3
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 171 DGSITMPACYETVTWIIFNK 190
DG++ +P+C++ + + F K
Sbjct: 57 DGTLEVPSCFKEPSSLAFWK 76
>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein
[Posttranslational modification, protein turnover,
chaperones / Energy production and conversion].
Length = 569
Score = 28.9 bits (65), Expect = 2.7
Identities = 27/108 (25%), Positives = 35/108 (32%), Gaps = 30/108 (27%)
Query: 107 PAEIQIFGFNSQLYTN-----FSEA----LYRAQGVVAIS----LLLQFPLSPG------ 147
P E Q F F ++ + + A LYR Q + I L Q L G
Sbjct: 32 PVE-QAFVFEAEQQDDQLNLRWQIADGYYLYRKQ--LKIVGKTASLGQPQLPQGETHHDE 88
Query: 148 --GAVEVKHLSIVGLLPETKYY------MTYDGSITMPACYETVTWII 187
G VEV + LP + +TY G CY T
Sbjct: 89 FFGDVEVYRHQLTLPLPLAQAAAGATLVVTYQGCAEAGFCYPPETRRF 136
>gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase. This model describes
guanine deaminase, which hydrolyzes guanine to xanthine
and ammonia. Xanthine can then be converted to urate by
xanthine dehydrogenase, and urate subsequently degraded.
In some bacteria, the guanine deaminase gene is found
near the xdhABC genes for xanthine dehydrogenase.
Non-homologous forms of guanine deaminase also exist, as
well as distantly related forms outside the scope of
this model [Purines, pyrimidines, nucleosides, and
nucleotides, Other].
Length = 401
Score = 28.8 bits (65), Expect = 3.3
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 82 FHELHIHYGLQDNMGS-----EHVINEYVFPAE 109
F + HIHY + + S + +Y FP E
Sbjct: 47 FIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTE 79
>gnl|CDD|213406 cd12213, ABD, Alpha-Mannosidase Binding Domain of Atg19/34. These
proteins are related to the Alpha-mannosidase (Ams1)
Binding Domain of Atg19/Atg34, a key component in the
targeting pathway that directs alpha-mannosidase and
aminopeptidase I to the vacuole, either through
cytoplasm-to-vacuole trafficking or via autophagy in
starvation conditions. Autophagy in a eukaryotic
mechanism in which cytoplasm is enclosed in
double-membraned autophagosomes which fuse with a
vacuole for transport into the lumen. In Saccharomyces
cerevisiae, alpha-mannosidase is selectively directed to
the vacuole via the direct interaction with Atg19 (and
paralog Atg34) in the Cvt pathway. Ams1 binding domains
(ABD) Atg19/34 have a immunoglobulin fold with eight
beta-strands. The ABD is responsible for Ams1
recognition, but its deletion does not affect the fusion
of Atg19 with prApe1, and the transport of prApe1 to the
vacuole. The Atg19 N-terminal region is a distinct
coiled-coil domain.
Length = 112
Score = 27.3 bits (61), Expect = 3.5
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 55 HSVVFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFG 114
+ + F + N + G L +Q+ + ++ Y+ P E+Q G
Sbjct: 13 NDLTFRLYNRGD--SALPGN-LKLVFQYQADD--------TANPVTVSIYMGPHELQPNG 61
Query: 115 FNSQLYTNFSEALYRAQGVVAISL 138
L + ++ +G I L
Sbjct: 62 SKKLLNFPYFGSIILLEGPCKIDL 85
>gnl|CDD|220467 pfam09911, DUF2140, Uncharacterized protein conserved in bacteria
(DUF2140). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 187
Score = 27.9 bits (63), Expect = 4.0
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 26/116 (22%)
Query: 89 YGLQDNMGSEHVINEYV-FPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPLSPG 147
Y + + +++ V I++ G LY F E G ++LL+
Sbjct: 66 YQKGSKIKYKFYLDDDVYLTGSIKVLGSKVPLYIYF-EPTVLKNG----NVLLK------ 114
Query: 148 GAVEVKHLSIVGLLP-ETKYYMTYDGSITMPACYETVTWIIFN---KPIYITKQQL 199
K LS VG L + + Y + Y+ W+ N K IY+ ++
Sbjct: 115 ----AKSLS-VGTLSLPISFVLNY-----IKRSYKLPEWVTINPKKKTIYLRLSEI 160
>gnl|CDD|109901 pfam00863, Peptidase_C4, Peptidase family C4. This peptidase is
present in the nuclear inclusion protein of
potyviruses.
Length = 233
Score = 27.6 bits (62), Expect = 5.7
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 PVHIDKIRINGGLTNTGHSVVFTVENTTRYHI 69
H+ K R NG LT FTV+NTT+ +
Sbjct: 44 NAHLFK-RNNGTLTIRSQHGEFTVKNTTQLKV 74
>gnl|CDD|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and
plants are enzymes with high specificity for fructose,
as are all FRKs, but they catalyzes the conversion of
fructose to fructose-6-phosphate, which is an entry
point into glycolysis via conversion into
glucose-6-phosphate. This is in contrast to FRKs [or
ketohexokinases (KHKs)] from mammalia and halophilic
archaebacteria, which phosphorylate fructose to
fructose-1-phosphate.
Length = 295
Score = 27.6 bits (62), Expect = 6.0
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 28 SKLLYDPNLRPVHIDK 43
+ +DPNLRP
Sbjct: 152 VLISFDPNLRPPLWRD 167
>gnl|CDD|238759 cd01482, vWA_collagen_alphaI-XII-like, Collagen: The
extracellular matrix represents a complex alloy of
variable members of diverse protein families defining
structural integrity and various physiological
functions. The most abundant family is the collagens
with more than 20 different collagen types identified
thus far. Collagens are centrally involved in the
formation of fibrillar and microfibrillar networks of
the extracellular matrix, basement membranes as well as
other structures of the extracellular matrix. Some
collagens have about 15-18 vWA domains in them. The VWA
domains present in these collagens mediate
protein-protein interactions.
Length = 164
Score = 26.9 bits (60), Expect = 7.0
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 40 HIDKIRINGGLTNTGHSVVFTVENT 64
I + GG T TG ++ E
Sbjct: 68 AIKNLPYKGGNTRTGKALTHVREKN 92
>gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional.
Length = 639
Score = 27.6 bits (61), Expect = 7.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 228 HHRPLRTNIDFNTKEINGKD 247
+H L NID N KE++G+
Sbjct: 330 NHPDLHDNIDVNVKELHGRK 349
>gnl|CDD|234198 TIGR03400, 18S_RNA_Rcl1p, 18S rRNA biogenesis protein RCL1.
Members of this strictly eukaryotic protein family are
not RNA 3'-phosphate cyclase (6.5.1.4), but rather a
homolog with a distinct function, found in the
nucleolus and required for ribosomal RNA processing.
Homo sapiens has both a member of this RCL (RNA
terminal phosphate cyclase like) family and EC 6.5.1.4,
while Saccharomyces has a member of this family only.
Length = 360
Score = 27.2 bits (61), Expect = 9.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 37 RPVHIDKIR---INGGLTNTGHSVVF-----TVENTTRYHINVTGGPLSYK 79
+PV I KIR N GL + + V F V N ++ I+ TG + YK
Sbjct: 21 KPVRITKIRSDDENPGLRD--YEVSFLRLLEKVTNGSKIEISYTGTTVIYK 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.140 0.440
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,427,460
Number of extensions: 1254523
Number of successful extensions: 900
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 37
Length of query: 258
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 163
Effective length of database: 6,723,972
Effective search space: 1096007436
Effective search space used: 1096007436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)