RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16207
(258 letters)
>1keq_A F65A/Y131C-MI carbonic anhydrase V; proton transfer, engineered
residue, lyase; HET: 4MZ; 1.88A {Mus musculus} SCOP:
b.74.1.1 PDB: 1dmx_A 1dmy_A* 1urt_A
Length = 248
Score = 240 bits (614), Expect = 5e-80
Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 18/248 (7%)
Query: 14 CNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG-LTNTGHSVVFTVENTTRYHINVT 72
C G RQSP+N++ +YDP L P+ + + L NTG++ +++ ++
Sbjct: 1 CATGTRQSPINIQWKDSVYDPQLAPLRVSYDAASCRYLWNTGYAFQVEFDDSCE-DSGIS 59
Query: 73 GGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQG 132
GGPL Y+ + H H+G D GSEH ++ + +PAE+ + +NS Y N +A G
Sbjct: 60 GGPLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENCKKASVGENG 119
Query: 133 VVAISLLLQF--------PL--------SPGGAVEVKHLSIVGLLPETKYYMTYDGSITM 176
+ I + L+ L V + L+P + Y TY GS+T
Sbjct: 120 LAVIGVFLKLGAHHQALQKLVDVLPEVRHKDTQVAMGPFDPSCLMPACRDYWTYPGSLTT 179
Query: 177 PACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPLRTNI 236
P E+VTWI+ P+ ++ QL R L+ + + NNYRP QPL R LR++
Sbjct: 180 PPLAESVTWIVQKTPVEVSPSQLSMFRTLLFSGRGEEEDVMVNNYRPLQPLRDRKLRSSF 239
Query: 237 DFNTKEIN 244
+ ++
Sbjct: 240 RLDRTKMR 247
>3ml5_A Carbonic anhydrase 7; protein-inhibitor complex, lyase; HET: AZM;
2.05A {Homo sapiens} PDB: 3mdz_A*
Length = 269
Score = 234 bits (599), Expect = 1e-77
Identities = 75/252 (29%), Positives = 132/252 (52%), Gaps = 22/252 (8%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHID-KIRINGGLTNTGHSVVF 59
P+ W + P +G RQSP+N+ S+ +Y P+L+P+ + + ++ +TN GHSV
Sbjct: 20 PSHWHKLYP----IAQGDRQSPINIISSQAVYSPSLQPLELSYEACMSLSITNNGHSVQV 75
Query: 60 TVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQL 119
++ VTGGPL Y+ + H H+G + ++GSEH ++ FP+E+ + +N++
Sbjct: 76 DFNDSDD-RTVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVHWNAKK 134
Query: 120 YTNFSEALYRAQGVVAISLLLQ--------------FPL--SPGGAVEVKHLSIVGLLPE 163
Y+ F EA G+ + + L+ + G + + LLP
Sbjct: 135 YSTFGEAASAPDGLAVVGVFLETGDEHPSMNRLTDALYMVRFKGTKAQFSCFNPKSLLPA 194
Query: 164 TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRP 223
+++Y TY GS+T P E+VTWI+ +PI I+++Q+ R L+ + + NN+RP
Sbjct: 195 SRHYWTYPGSLTTPPLSESVTWIVLREPISISERQMGKFRSLLFTSEDDERIHMVNNFRP 254
Query: 224 PQPLHHRPLRTN 235
PQPL R ++ +
Sbjct: 255 PQPLKGRVVKAS 266
>3d0n_A Carbonic anhydrase 13; lyase, metal-binding, metal binding PROT;
HET: GOL; 1.55A {Homo sapiens} PDB: 3czv_A* 3da2_A*
Length = 264
Score = 234 bits (599), Expect = 1e-77
Identities = 77/253 (30%), Positives = 128/253 (50%), Gaps = 22/253 (8%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG-LTNTGHSVVF 59
P W E+ G +QSP+ ++ ++ YD +LRP+ I + ++N+GHS
Sbjct: 16 PIHWK----EFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSGHSFNV 71
Query: 60 TVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQL 119
++T + GGPL+ Y+ ++H+H+G D+ GSEH+++ + AE+ + +NS
Sbjct: 72 DFDDTEN-KSVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWNSDK 130
Query: 120 YTNFSEALYRAQGVVAISLLLQF--------PL--------SPGGAVEVKHLSIVGLLPE 163
Y +F EA + G+ + + LQ + G + ++ LLP
Sbjct: 131 YPSFVEAAHEPDGLAVLGVFLQIGEPNSQLQKITDTLDSIKEKGKQTRFTNFDLLSLLPP 190
Query: 164 TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRP 223
+ Y TY GS+T+P E+VTWI+ +PI I+ QQL R L+ A L +N+RP
Sbjct: 191 SWDYWTYPGSLTVPPLLESVTWIVLKQPINISSQQLAKFRSLLCTAEGEAAAFLVSNHRP 250
Query: 224 PQPLHHRPLRTNI 236
PQPL R +R +
Sbjct: 251 PQPLKGRKVRASF 263
>2foy_A Carbonic anhydrase 1; lyase, zinc, inhibitor, copper; HET: B30;
1.55A {Homo sapiens} SCOP: b.74.1.1 PDB: 1bzm_A* 1czm_A*
1azm_A 1hug_A 1huh_A 1hcb_A* 2fw4_A* 2nmx_A* 2nn1_A*
2nn7_A* 3lxe_A* 1jv0_A 1j9w_A 1crm_A 2cab_A 2it4_A
Length = 260
Score = 231 bits (591), Expect = 2e-76
Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 22/252 (8%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG-LTNTGHSVVF 59
P W + P G QSPV+++ S+ +D +L+P+ + + N GHS
Sbjct: 13 PEQWSKLYP----IANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSFHV 68
Query: 60 TVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQL 119
E+ + GGP S Y+ + H H+G + GSEH ++ + AE+ + +NS
Sbjct: 69 NFEDNDN-RSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAK 127
Query: 120 YTNFSEALYRAQGVVAISLLLQF--------PL--------SPGGAVEVKHLSIVGLLPE 163
Y++ +EA +A G+ I +L++ + + G + LLP
Sbjct: 128 YSSLAEAASKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTKGKRAPFTNFDPSTLLPS 187
Query: 164 TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRP 223
+ + TY GS+T P YE+VTWII + I ++ +QL R L+ P+ +N RP
Sbjct: 188 SLDFWTYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRP 247
Query: 224 PQPLHHRPLRTN 235
QPL R +R +
Sbjct: 248 TQPLKGRTVRAS 259
>3k34_A Carbonic anhydrase 2; atomic resolution, sulfonamide inhibitor
mutation, lyase, metal-binding, lyase-lyase inhibitor
compl; HET: HGB SUA; 0.90A {Homo sapiens} PDB: 1ca3_A*
1cnw_A* 1cny_A* 1eou_A* 1g6v_A 1hca_A 1kwq_A* 1kwr_A*
1t9n_A 1tb0_X 1tbt_X 1te3_X 1teq_X 1teu_X 1cnx_A 1xev_A
1xeg_A 2ax2_A* 2eu3_A* 2ez7_A* ...
Length = 260
Score = 231 bits (590), Expect = 3e-76
Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 23/252 (9%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIR-INGGLTNTGHSVVF 59
P W P KG RQSPV+++ YDP+L+P+ + + + + N GH+
Sbjct: 13 PEHWHKDFP----IAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQATSLRILNNGHAFNV 68
Query: 60 TVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQL 119
+++ + GGPL Y+ + H H+G D GSEH +++ + AE+ + +N++
Sbjct: 69 EFDDSQD-KAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHWNTK- 126
Query: 120 YTNFSEALYRAQGVVAISLLLQFPLS----------------PGGAVEVKHLSIVGLLPE 163
Y +F +A+ + G+ + + L+ + G + + + GLLPE
Sbjct: 127 YGDFGKAVQQPDGLAVLGIFLKVGSAKPGLQKVVDVLDSIKTKGKSADFTNFDPRGLLPE 186
Query: 164 TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRP 223
+ Y TY GS+T P E VTWI+ +PI ++ +Q+ RKL P+ + +N+RP
Sbjct: 187 SLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQVLKFRKLNFNGEGEPEELMVDNWRP 246
Query: 224 PQPLHHRPLRTN 235
QPL +R ++ +
Sbjct: 247 AQPLKNRQIKAS 258
>3fw3_A Carbonic anhydrase 4; structure-based drug design. small molecule
complex. CO-CRYS membrane, disease mutation,
glycoprotein, GPI-anchor; HET: ETS GLC; 1.72A {Homo
sapiens} PDB: 1znc_A* 3f7b_A* 3f7u_A*
Length = 266
Score = 230 bits (587), Expect = 1e-75
Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 29/259 (11%)
Query: 1 PAFWGLINPE-WSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKI--RINGGLTNTGHSV 57
+ + + P W + RQSP+N+ +K D L + + N GHSV
Sbjct: 13 SSNYPCLVPVKWGGNCQKDRQSPINIVTTKAKVDKKLGRFFFSGYDKKQTWTVQNNGHSV 72
Query: 58 VFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNS 117
+ +EN +++GG L YQ +LH+H+ GSEH ++ F E+ I
Sbjct: 73 MMLLENKA----SISGGGLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHEKE 128
Query: 118 QL-YTNFSEALYRAQGVVAISLLLQF---------PL--------SPGGAVEVKHLSIVG 159
+ N EA + ++ L++ PL P + + S++
Sbjct: 129 KGTSRNVKEAQDPEDEIAVLAFLVEAGTQVNEGFQPLVEALSNIPKPEMSTTMAESSLLD 188
Query: 160 LLPE---TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAP 216
LLP+ ++Y Y GS+T P C E V W +F +PI + ++Q+ + + D K
Sbjct: 189 LLPKEEKLRHYFRYLGSLTTPTCDEKVVWTVFREPIQLHREQILAFSQKLYYD-KEQTVS 247
Query: 217 LGNNYRPPQPLHHRPLRTN 235
+ +N RP Q L R + +
Sbjct: 248 MKDNVRPLQQLGQRTVIKS 266
>2hfx_A Carbonic anhydrase 3; proton shuttle, HCA III, proton transfer,
lyase; 1.70A {Homo sapiens} PDB: 3uyq_A 2hfw_A 1z93_A
2hfy_A 3uyn_A 1z97_A 1flj_A*
Length = 260
Score = 228 bits (583), Expect = 3e-75
Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 23/252 (9%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG-LTNTGHSVVF 59
P W + P KG QSP+ L + +DP+L+P + + + N GH+
Sbjct: 13 PDHWHELFPNA----KGENQSPIELHTKDIRHDPSLQPWSVSYDGGSAKTILNNGHTCRV 68
Query: 60 TVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQL 119
++T + GGPL Y+ + H+H+G D+ GSEH ++ + AE+ + +N +
Sbjct: 69 VFDDTYD-RSMLRGGPLPGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNPK- 126
Query: 120 YTNFSEALYRAQGVVAISLLLQ--------------FPL--SPGGAVEVKHLSIVGLLPE 163
Y F EAL + G+ I + L+ + G L P
Sbjct: 127 YNTFKEALKQRDGIAVIGIFLKIGHENGEFQIFLDALDKIKTKGKEAPFTKFDPSSLFPA 186
Query: 164 TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRP 223
++ Y TY GS T P C E + W++ +P+ ++ Q+ LR L+ P PL +N+RP
Sbjct: 187 SRDYWTYQGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLLSSAENEPPVPLVSNWRP 246
Query: 224 PQPLHHRPLRTN 235
PQP+++R +R +
Sbjct: 247 PQPINNRVVRAS 258
>1rj5_A Carbonic anhydrase XIV; beta-sheet, alpha-helix, zinc enzyme,
lyase; HET: NAG BMA; 2.81A {Mus musculus} SCOP: b.74.1.1
PDB: 1rj6_A*
Length = 261
Score = 223 bits (570), Expect = 3e-73
Identities = 74/258 (28%), Positives = 122/258 (47%), Gaps = 33/258 (12%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG----LTNTGHS 56
W PE G QSP+N++ +++DP+L V G L N GH+
Sbjct: 13 QDHWPTSYPECG----GDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEPLDLHNNGHT 68
Query: 57 VVFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNM-GSEHVINEYVFPAEIQIFGF 115
V ++ T + G L KY +LH+H+G + ++ GSEH IN AE+ + +
Sbjct: 69 VQLSLPPT------LHLGGLPRKYTAAQLHLHWGQRGSLEGSEHHINSEATAAELHVVHY 122
Query: 116 NSQLYTNFSEALYRAQGVVAISLLLQF---------PL--------SPGGAVEVKHLSIV 158
+SQ Y++ SEA + QG+ + +L++ + V S+
Sbjct: 123 DSQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRLHEIRYKDQKTSVPPFSVR 182
Query: 159 GLLPE-TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPL 217
L P+ + + Y+GS+T P CY++V W +FN+ I+ QL L++ + + P PL
Sbjct: 183 ELFPQQLEQFFRYNGSLTTPPCYQSVLWTVFNRRAQISMGQLEKLQETLSSTEEDPSEPL 242
Query: 218 GNNYRPPQPLHHRPLRTN 235
NYR PQPL+ R + +
Sbjct: 243 VQNYRVPQPLNQRTIFAS 260
>3iai_A Carbonic anhydrase 9; transmembrane proteins, cell membrane,
projection, disulfide bond, glycoprotein, lyase,
membrane, binding, nucleus; HET: AZM NAG BMA MAN; 2.20A
{Homo sapiens}
Length = 257
Score = 223 bits (569), Expect = 3e-73
Identities = 73/258 (28%), Positives = 117/258 (45%), Gaps = 35/258 (13%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG----LTNTGHS 56
W ++P + GR QSPV++ P + P LRP+ + ++ L N GHS
Sbjct: 12 DPPWPRVSPACA----GRFQSPVDIRPQLAAFSPALRPLELLGFQLPPLPELRLRNNGHS 67
Query: 57 VVFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFN 116
V T+ + + GP +Y+ +LH+H+G GSEH + + FPAEI + +
Sbjct: 68 VQLTLPPG----LEMALGPG-REYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLS 122
Query: 117 SQLYTNFSEALYRAQGVVAISLLLQF---------PL--------SPGGAVEVKHLSIVG 159
+ + EAL R G+ ++ L+ L G +V L I
Sbjct: 123 TA-FARVDEALGRPGGLAVLAAFLEEGPEENSAYEQLLSRLEEIAEEGSETQVPGLDISA 181
Query: 160 LLPE-TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLG 218
LLP Y Y+GS+T P C + V W +FN+ + ++ +QLH L + G + L
Sbjct: 182 LLPSDFSRYFQYEGSLTTPPCAQGVIWTVFNQTVMLSAKQLHTLSDTLWGP---GDSRLQ 238
Query: 219 NNYRPPQPLHHRPLRTNI 236
N+R QPL+ R + +
Sbjct: 239 LNFRATQPLNGRVIEASF 256
>2znc_A Carbonic anhydrase IV; lyase, zinc, murine, membrane; 2.80A {Mus
musculus} SCOP: b.74.1.1 PDB: 3znc_A*
Length = 258
Score = 222 bits (568), Expect = 5e-73
Identities = 63/256 (24%), Positives = 102/256 (39%), Gaps = 33/256 (12%)
Query: 1 PAFWGLINPE-WSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDK--IRINGGLTNTGHSV 57
+ PE W K +QSP+N+ ++ +P L P + + + N H+V
Sbjct: 9 DPRSSCLGPEKWPGACKENQQSPINIVTARTKVNPRLTPFILVGYDQKQQWPIKNNQHTV 68
Query: 58 VFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNS 117
T+ + GG L +Y+ +LH+H+ ++ GSEH I+ F E+ I
Sbjct: 69 EMTLGGGA----CIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMHIVHKKL 124
Query: 118 QLYTNFSEALYRAQGVVAISLLLQF---------PL--------SPGGAVEVKHLSIVGL 160
S ++ +++ PL P V+ S+ +
Sbjct: 125 T-----SSKEDSKDKFAVLAFMIEVGDKVNKGFQPLVEALPSISKPHSTSTVRESSLQDM 179
Query: 161 LPE---TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPL 217
LP Y Y+GS+T P C ETV W ++ +PI I K Q K + D +
Sbjct: 180 LPPSTKMYTYFRYNGSLTTPNCDETVIWTVYKQPIKIHKNQFLEFSKNLYYDEDQK-LNM 238
Query: 218 GNNYRPPQPLHHRPLR 233
+N RP QPL R +
Sbjct: 239 KDNVRPLQPLGKRQVF 254
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain,
alternative splicing, glycoprotein, hydrolase, membrane,
polymorphism; 2.00A {Homo sapiens} PDB: 3s97_A*
Length = 272
Score = 222 bits (567), Expect = 1e-72
Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 35/262 (13%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRI----NGGLTNTGHS 56
WG ++ CN +QSP+N++ + NL+ + N + NTG +
Sbjct: 16 QKNWGK---KYPTCN-SPKQSPINIDEDLTQVNVNLKKLKFQGWDKTSLENTFIHNTGKT 71
Query: 57 VVFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNM--GSEHVINEYVFPAEIQIFG 114
V + N V+GG ++ ++ H+G + GSEH + FP E+QI+
Sbjct: 72 VEINLTNDY----RVSGGVSEMVFKASKITFHWGKCNMSSDGSEHSLEGQKFPLEMQIYC 127
Query: 115 FNSQLYTNFSEALYRAQGVVAISLLLQ------FPLS-----------PGGAVEVKHLSI 157
F++ +++F EA+ + A+S+L + G + +
Sbjct: 128 FDADRFSSFEEAVKGKGKLRALSILFEVGTEENLDFKAIIDGVESVSRFGKQAALDPFIL 187
Query: 158 VGLLPE-TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLM---QGDMKHP 213
+ LLP T Y Y+GS+T P C +TV WI+F + I++ QL +++ Q
Sbjct: 188 LNLLPNSTDKYYIYNGSLTSPPCTDTVDWIVFKDTVSISESQLAVFCEVLTMQQSGYVML 247
Query: 214 KAPLGNNYRPPQPLHHRPLRTN 235
L NN+R Q R + ++
Sbjct: 248 MDYLQNNFREQQYKFSRQVFSS 269
>2w2j_A Carbonic anhydrase-related protein; lyase, metal-binding; 1.60A
{Homo sapiens}
Length = 291
Score = 221 bits (565), Expect = 4e-72
Identities = 75/263 (28%), Positives = 131/263 (49%), Gaps = 36/263 (13%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG---LTNTGHSV 57
WGL+ P+ + G QSP+NL + YDP+L V + + +TN GH++
Sbjct: 35 GVEWGLVFPDAN----GEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTI 90
Query: 58 VFTVENTTRYHINVTGGPL--SYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGF 115
+++ + ++GGPL ++++ +E+ H+G ++ GSEH +N FP E+ + +
Sbjct: 91 QVILKSKS----VLSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHW 146
Query: 116 NSQLYTNFSEALYRAQGVVAISLLLQFPLS----------------PGGAVEVKHLSIVG 159
NS L+ + EA+ + G+ I+L +Q G + + +
Sbjct: 147 NSTLFGSIDEAVGKPHGIAIIALFVQIGKEHVGLKAVTEILQDIQYKGKSKTIPCFNPNT 206
Query: 160 LLPE--TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGD-----MKH 212
LLP+ + Y Y+GS+T+P C E VTWI+F P+ I++ Q+ R+L ++
Sbjct: 207 LLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQLQIEEFRRLRTHVKGAELVEG 266
Query: 213 PKAPLGNNYRPPQPLHHRPLRTN 235
LG+N+RP QPL R +R
Sbjct: 267 CDGILGDNFRPTQPLSDRVIRAA 289
>1jd0_A Carbonic anhydrase XII; extracellular domain, bitopic protein, type
I membrane protein, lyase; HET: AZM; 1.50A {Homo
sapiens} SCOP: b.74.1.1 PDB: 1jcz_A*
Length = 263
Score = 219 bits (559), Expect = 1e-71
Identities = 71/260 (27%), Positives = 115/260 (44%), Gaps = 34/260 (13%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG----LTNTGHS 56
W ++ C G QSP++L L YD +L P+ ++ LTN GHS
Sbjct: 12 ENSWS---KKYPSCG-GLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHS 67
Query: 57 VVFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNM-GSEHVINEYVFPAEIQIFGF 115
V + + + L +Y +LH+H+G ++ GSEH ++ F AE+ I +
Sbjct: 68 VKLNLPSD------MHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHY 121
Query: 116 NSQLYTNFSEALYRAQGVVAISLLLQFPLS----------------PGGAVEVKHLSIVG 159
NS LY + S A +++G+ +++L++ G V +I
Sbjct: 122 NSDLYPDASTASNKSEGLAVLAVLIEMGSFNPSYDKIFSHLQHVKYKGQEAFVPGFNIEE 181
Query: 160 LLPE-TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKA--P 216
LLPE T Y Y GS+T P C TV W +F P+ I+++QL L + +
Sbjct: 182 LLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPRE 241
Query: 217 LGNNYRPPQPLHHRPLRTNI 236
+ NN+R Q R + T+
Sbjct: 242 MINNFRQVQKFDERLVYTSF 261
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 217 bits (555), Expect = 8e-71
Identities = 61/261 (23%), Positives = 106/261 (40%), Gaps = 34/261 (13%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG----LTNTGHS 56
P W + G QSP+++ + + +D + NTG +
Sbjct: 17 PEHWVTSSV----SCGGSHQSPIDILDHHARVGDEYQELQLDGFDNESSNKTWMKNTGKT 72
Query: 57 VVFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQD-NMGSEHVINEYVFPAEIQIFGF 115
V +++ V+G L +++ ++ H+G + + GSEH +N FP E+QIF +
Sbjct: 73 VAILLKDDY----FVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSVNGRRFPVEMQIFFY 128
Query: 116 NSQLYTNFSEALYRAQGVVAISLLLQFP-----------------LSPGGAVEVKHLSIV 158
N + +F A+ + + A+++ Q + + +
Sbjct: 129 NPDDFDSFQTAISENRIIGAMAIFFQVSPRDNSALDPIIHGLKGVVHHEKETFLDPFILR 188
Query: 159 GLLPE-TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLM---QGDMKHPK 214
LLP Y Y GS+T P C E V WI+F +P+ I+ QL + Q D
Sbjct: 189 DLLPASLGSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVKSV 248
Query: 215 APLGNNYRPPQPLHHRPLRTN 235
L NN+RP Q L+ R + +
Sbjct: 249 EYLRNNFRPQQALNDRVVSKS 269
>3fe4_A Carbonic anhydrase 6; secretion, metal binding, structural GEN
structural genomics consortium, SGC, glycoprotein,
lyase, M binding, secreted; 1.90A {Homo sapiens}
Length = 278
Score = 216 bits (553), Expect = 2e-70
Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 38/279 (13%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG---LTNTGHSV 57
A W P G+RQSP+NL+ +K+ Y+P+L+ +++ G + N GH+V
Sbjct: 13 EAHWPQHYP----ACGGQRQSPINLQRTKVRYNPSLKGLNMTGYETQAGEFPMVNNGHTV 68
Query: 58 VFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQ--DNMGSEHVINEYVFPAEIQIFGF 115
++ +T + V G + Y ++H H+G + GSEH ++ EI I +
Sbjct: 69 QISLPST--MRMTVADGTV---YIAQQMHFHWGGASSEISGSEHTVDGIRHVIEIHIVHY 123
Query: 116 NSQLYTNFSEALYRAQGVVAISLLLQF----------PL--------SPGGAVEVKHLSI 157
NS+ Y ++ A G+ ++ ++ PG + L +
Sbjct: 124 NSK-YKSYDIAQDAPDGLAVLAAFVEVKNYPENTYYSNFISHLANIKYPGQRTTLTGLDV 182
Query: 158 VGLLPE-TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAP 216
+LP ++Y TY GS+T P C E V W + + +++ Q+ L + H
Sbjct: 183 QDMLPRNLQHYYTYHGSLTTPPCTENVHWFVLADFVKLSRTQVWKLENSLLD---HRNKT 239
Query: 217 LGNNYRPPQPLHHRPLRTNIDF-NTKEINGKDCPTMHHK 254
+ N+YR QPL+HR + +N + ++ +
Sbjct: 240 IHNDYRRTQPLNHRVVESNFPNQEYTLGSEFQAENLYFQ 278
>4e9o_X D8L antigen, IMV membrane protein; CAH alpha fold, VP7 motif, beta
sheet, cell surface chondroi binding, viral entry,
chondroitin sulfate; 1.42A {Vaccinia virus} PDB: 4etq_X
Length = 269
Score = 206 bits (527), Expect = 1e-66
Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 27/234 (11%)
Query: 17 GRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG-LTNTGHSVVFTVENTTRYHINVTGGP 75
++ SP+N+E K + + L+P+ I + NTG V + ++GG
Sbjct: 2 PQQLSPINIETKKAISNARLKPLDIHYNESKPTTIQNTGKLVRINFKGGY-----ISGGF 56
Query: 76 LSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVA 135
L +Y LHI++G +D+ GS H+I+ Y + EI + +N + Y+++ EA G++
Sbjct: 57 LPNEYVLSSLHIYWGKEDDYGSNHLIDVYKYSGEINLVHWNKKKYSSYEEAKKHDDGLII 116
Query: 136 ISLLLQFP-----------------LSPGGAVEVKH-LSIVGLLPETKYYMTYDGSITMP 177
IS+ LQ S + + LLP Y TY G T
Sbjct: 117 ISIFLQVLDHKNVYFQKIVNQLDSIRSANTSAPFDSVFYLDNLLPSKLDYFTYLG--TTI 174
Query: 178 ACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPK-APLGNNYRPPQPLHHR 230
WIIF PI I QL R L+ K + NYR P L+
Sbjct: 175 NHSADAVWIIFPTPINIHSDQLSKFRTLLSLSNHEGKPHYITENYRNPYKLNDD 228
>1y7w_A Halotolerant alpha-type carbonic anhydrase (DCA I; haltolerant
protein, algal Ca anhydrase, salt tolerant protein, zinc
enzyme; 1.86A {Dunaliella salina}
Length = 291
Score = 188 bits (479), Expect = 4e-59
Identities = 52/268 (19%), Positives = 96/268 (35%), Gaps = 52/268 (19%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYD--------PNLRPVHIDKIRINGG-LT 51
P ++ C+ G QSP+++ ++L+ +L +++D + +G LT
Sbjct: 33 PGLQEGGTTKYPACS-GSNQSPIDINTNQLMEPSSRSGTSAVSLNGLNVDGAQADGITLT 91
Query: 52 NTGHSVV----FTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFP 107
N + T + + G + + + H H+ SEH IN +P
Sbjct: 92 NAKVDLEQGMKVTFDQPAANLPTIEIGGTTKSFVPIQFHFHHF-----LSEHTINGIHYP 146
Query: 108 AEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQF-----------------------PL 144
E+ I + + A + I ++ ++
Sbjct: 147 LELHIVMQEQD-PADVATA-----QLAVIGIMYKYSENGDAFLNSLQTQIEGKIGDGTAS 200
Query: 145 SPGGAVEVKHLSIVG-LLPETKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLR 203
V + ++++ LLP + Y YDGS+T P C E V W +F P +T++Q+
Sbjct: 201 YGDTGVSIDNINVKTQLLPSSLKYAGYDGSLTTPGCDERVKWHVFTTPREVTREQMKLFV 260
Query: 204 KLMQGDMKHPKAPLGNNYRPPQPLHHRP 231
+ G N R Q L R
Sbjct: 261 DVTMGA---HAGADVVNNRMIQDLGDRE 285
>1kop_A Carbonic anhydrase; lyase, structural trimming; 1.90A {Neisseria
gonorrhoeae} SCOP: b.74.1.1 PDB: 1koq_A
Length = 223
Score = 185 bits (471), Expect = 9e-59
Identities = 53/243 (21%), Positives = 88/243 (36%), Gaps = 46/243 (18%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGGLTNTGHSVVFT 60
P WG ++ E+ LC+ G+ QSPVN+ + L + ++ + N GH++
Sbjct: 12 PESWGNLSEEFRLCSTGKNQSPVNITET---VSGKLPAIKVNYKPSMVDVENNGHTIQVN 68
Query: 61 VENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLY 120
+ V G Y + H H + SE+ I FP E +
Sbjct: 69 YPEGG-NTLTVNGRT----YTLKQFHFH------VPSENQIKGRTFPMEAHFVHLDENKQ 117
Query: 121 TNFSEALYRAQGVVAI------------SLLLQFPLSPGGAVEVKHLSIVGLLPETKYYM 168
V+A+ S+ P++ G + LLP+ Y
Sbjct: 118 P----------LVLAVLYEAGKTNGRLSSIWNVMPMTAGKVKLNQPFDASTLLPKRLKYY 167
Query: 169 TYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLH 228
+ GS+T P C E V+W++ +I + Q + + N RP QPL+
Sbjct: 168 RFAGSLTTPPCTEGVSWLVLKTYDHIDQAQAEKFTRAV----------GSENNRPVQPLN 217
Query: 229 HRP 231
R
Sbjct: 218 ARV 220
>3q31_A Carbonic anhydrase; glysosy secreted, dimeric, lyase; HET: NAG;
2.70A {Aspergillus oryzae}
Length = 244
Score = 174 bits (444), Expect = 2e-54
Identities = 51/244 (20%), Positives = 86/244 (35%), Gaps = 41/244 (16%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG-LTNTGHSVVF 59
P W ++ C KG+ QSP+ ++ + + Y + +D +G L N G +
Sbjct: 19 PLNWYGLDEANEACAKGKHQSPIVIDSAAIDYAA-SGSLKLDLPLADGSKLENLGFGL-- 75
Query: 60 TVENTTRYHINVTGGPLSY---KYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFN 116
+ +T G L+ Y + H H SEH +NE FP E+
Sbjct: 76 --------QVTLTNGSLTANSKTYTLAQFHFHTP------SEHHVNEEHFPMEVHFVFQT 121
Query: 117 SQ-------LYTNFSEALYRAQGVVAISLLLQFPLSPGGAVEVKHLSIVGLLPE--TKYY 167
+ + SE ++ + G + L GLL
Sbjct: 122 AAKETAVVGFFFQLSEVGDSVPLFDSVFAPIDNIPDAGTSTTTGQLDFGGLLDHFNRHGV 181
Query: 168 MTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPL 227
Y GS+T P C E V W + +P+ +T Q + ++K++ N R Q
Sbjct: 182 YQYTGSLTTPPCTEEVMWNLSTEPLPLTVQGYNKVKKII-----------KYNARYTQNA 230
Query: 228 HHRP 231
+
Sbjct: 231 LGQD 234
>3b1b_A Carbonic anhydrase 1; N-glycosylation, zinc-finger, lyase; HET:
NAG; 1.88A {Chlamydomonas reinhardtii}
Length = 377
Score = 170 bits (432), Expect = 3e-51
Identities = 47/305 (15%), Positives = 90/305 (29%), Gaps = 65/305 (21%)
Query: 1 PAFWGLIN--PEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG--------- 49
W + +C GR+QSP+N+ ++L + + + + +
Sbjct: 46 GENWEGKDGAGNAWVCKTGRKQSPINVPQYQVLDGKGSKIANGLQTQWSYPDLMSNGTSV 105
Query: 50 -LTNTGHSVVFTVENTTRYHINVTGGPL--------------------SYKYQFHELHIH 88
+ N GH++ H + + + H H
Sbjct: 106 QVINNGHTIQVQWTYNYAGHATIAIPAMHNQTNRIVDVLEMRPNDAADRVTAVPTQFHFH 165
Query: 89 YGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPLSP-- 146
SEH++ ++P E+ I ++ + +L Q P
Sbjct: 166 ST------SEHLLAGKIYPLELHIVHQVTEKL-----EACKGGCFSVTGILFQLDNGPDN 214
Query: 147 -----------------GGAVEVKHLSIVGLLPETKYYMTYDGSITMPACYETVTWIIFN 189
+ + LLP + Y+TY+GS+T P C E + W +
Sbjct: 215 ELLEPIFANMPSREGTFSNLPAGTTIKLGELLPSDRDYVTYEGSLTTPPCSEGLLWHVMT 274
Query: 190 KPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPLRTNIDFNTKEINGKDCP 249
+P I+ Q + R + + HHR L N + P
Sbjct: 275 QPQRISFGQWNRYRLAVGLKECNSTET---AADAGHHHHHRRLLHNHAHLEEVPAATSEP 331
Query: 250 TMHHK 254
+ +
Sbjct: 332 KHYFR 336
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 2e-05
Identities = 54/271 (19%), Positives = 83/271 (30%), Gaps = 83/271 (30%)
Query: 2 AFW-GL----INPEWSLCNKGRRQSPVNLE--PSKLLYDPNLRPVHIDKI--RINGGLTN 52
F+ G+ P SL S N E PS +L NL + + N L
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 53 TGHSVVFTVENTTRYHINVTGGPLS---YKYQFHELHIHYGL-QDNM-GSE---HVINEY 104
V ++ N + ++ V+G P S + GL Q + SE N +
Sbjct: 363 GKQ-VEISLVNGAK-NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 105 --VF-PAEIQIFGFNSQLYTNFSEALYRAQGVVAISLLLQFPLSPGGAVEVKHLSI-VGL 160
V P F+S L A L+ + + + K + I V
Sbjct: 421 LPVASP-------FHSHLLVP------------ASDLINKDLVKNNVSFNAKDIQIPV-- 459
Query: 161 LPETKYYMTYDGS-----------------ITMP-----ACYETVTWII-FNKP------ 191
Y T+DGS I +P T I+ F P
Sbjct: 460 ------YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGASGL 512
Query: 192 IYITKQQLHG--LRKLMQGDMKH-PKAPLGN 219
+T + G +R ++ G + P G
Sbjct: 513 GVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 31.6 bits (71), Expect = 0.32
Identities = 51/269 (18%), Positives = 75/269 (27%), Gaps = 136/269 (50%)
Query: 75 PLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFN-SQLYTNFSEALYRAQGV 133
PL Q HY V ++ GF +L + A +QG+
Sbjct: 239 PLIGVIQL----AHY--------------VVT---AKLLGFTPGELRSYLKGATGHSQGL 277
Query: 134 V--------------------AISLLL--------QFP---LSPG---GAVEVKH----- 154
V AI++L +P L P ++E
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 155 -LSIVGLLPET-KYYMTYDGSITMPACYETVTWIIFNKPIYIT-------------KQQL 199
LSI L E + Y+ S +PA K + I+ Q L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNS-HLPA----------GKQVEISLVNGAKNLVVSGPPQSL 386
Query: 200 HG----LRKLMQGDMKHPKAPLGNN-------YRPPQPLH---------HRPL------- 232
+G LRK KAP G + R + + H L
Sbjct: 387 YGLNLTLRKA--------KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 233 ------RTNIDFNTKEI--------NGKD 247
+ N+ FN K+I +G D
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.048
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 15/44 (34%)
Query: 19 RQSPVNLEPSKLLYDPNLRPVHIDKIRINGGLTNTGHSVVFTVE 62
+Q+ L+ S LY + P + I T+E
Sbjct: 19 KQALKKLQASLKLYADDSAPA----LAIKA-----------TME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.29
Identities = 20/150 (13%), Positives = 40/150 (26%), Gaps = 52/150 (34%)
Query: 71 VTGGPLSYKYQFHELHIHYGLQ-DNMGSEH--VINEYVFPAEIQ------------IFGF 115
V P +++ ++ +N + H +++ Y P +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 116 ---------NSQLYTNFSEALYRAQGVVAISLLLQF---PLSPGGAVEVKHLSIVGLLPE 163
+ + T F ++ L +F + SI+ L +
Sbjct: 477 IGHHLKNIEHPERMTLFRM-VF---------LDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 164 TKYYMTYDGSITMPACYETVTWIIFNKPIY 193
K+Y Y I N P Y
Sbjct: 527 LKFYKPY---------------ICDNDPKY 541
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo
sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I
3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A
1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B*
2ica_A* 2o7n_A* 3m6f_A* ...
Length = 179
Score = 27.7 bits (62), Expect = 3.0
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 40 HIDKIRINGGLTNTGHSVVFTVEN 63
+ ++ LTNT ++ +
Sbjct: 68 LLKHVKHMLLLTNTFGAINYVATE 91
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase,
structural genomics, joint center for structural
genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 296
Score = 27.9 bits (63), Expect = 3.1
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 32 YDPNLRPVHIDKIRINGGL 50
+D NLR K +
Sbjct: 151 FDINLRQDFYTKEVLRESF 169
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A
{Toxoplasma gondii}
Length = 178
Score = 26.9 bits (60), Expect = 4.8
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 40 HIDKIRINGGLTNTGHSVVFTVEN 63
+ + G TNT + +
Sbjct: 87 AVLDMPYKKGSTNTSDGLKACKQI 110
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide
binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB:
4dmu_B 2adf_A 1fe8_A 1ao3_A
Length = 189
Score = 26.9 bits (60), Expect = 5.0
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 40 HIDKIRINGGLTNTGHSVVFTVEN 63
+D ++ GG + G ++ F V
Sbjct: 73 LVDVMQREGGPSQIGDALGFAVRY 96
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A
1bhq_1 1bho_1 1idn_1 3qa3_G
Length = 194
Score = 27.0 bits (60), Expect = 5.1
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 40 HIDKIRINGGLTNTGHSVVFTVEN 63
+ I G T+T + V
Sbjct: 71 LVKPITQLLGRTHTATGIRKVVRE 94
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
{Homo sapiens} SCOP: c.62.1.1
Length = 198
Score = 27.0 bits (60), Expect = 5.2
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 40 HIDKIRINGGLTNTGHSVVFTVEN 63
+ + G T T ++ V
Sbjct: 75 LLASVHQLQGFTYTATAIQNVVHR 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.440
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,098,581
Number of extensions: 236017
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 34
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)