RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16207
(258 letters)
>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme I [TaxId: 9606]}
Length = 258
Score = 196 bits (499), Expect = 3e-63
Identities = 73/252 (28%), Positives = 118/252 (46%), Gaps = 22/252 (8%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG-LTNTGHSVVF 59
P W + P G QSPV+++ S+ +D +L+P+ + + N GHS
Sbjct: 11 PEQWSKLYP----IANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSFHV 66
Query: 60 TVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQL 119
E+ + + GGP S Y+ + H H+G + GSEH ++ + AE+ + +NS
Sbjct: 67 NFEDNDNRSV-LKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAK 125
Query: 120 YTNFSEALYRAQGVVAISLL----------------LQFPLSPGGAVEVKHLSIVGLLPE 163
Y++ +EA +A G+ I +L LQ + G + LLP
Sbjct: 126 YSSLAEAASKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTKGKRAPFTNFDPSTLLPS 185
Query: 164 TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRP 223
+ + TY GS+T P YE+VTWII + I ++ +QL R L+ P+ +N RP
Sbjct: 186 SLDFWTYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRP 245
Query: 224 PQPLHHRPLRTN 235
QPL R +R +
Sbjct: 246 TQPLKGRTVRAS 257
>d1flja_ b.74.1.1 (A:) Carbonic anhydrase {Rat (Rattus norvegicus),
isozyme III [TaxId: 10116]}
Length = 259
Score = 191 bits (487), Expect = 2e-61
Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 23/252 (9%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHID-KIRINGGLTNTGHSVVF 59
P W + P KG QSP+ L + +DP+L+P + + N G +
Sbjct: 12 PEHWHELYP----IAKGDNQSPIELHTKDIRHDPSLQPWSVSYDPGSAKTILNNGKTCRV 67
Query: 60 TVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQL 119
++T + + GGPLS Y+ + H+H+G D+ GSEH ++ + AE+ + +N +
Sbjct: 68 VFDDTFDRSM-LRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNPK- 125
Query: 120 YTNFSEALYRAQGVVAISLL----------------LQFPLSPGGAVEVKHLSIVGLLPE 163
Y F EAL + G+ + + L + G H L P
Sbjct: 126 YNTFGEALKQPDGIAVVGIFLKIGREKGEFQILLDALDKIKTKGKEAPFNHFDPSCLFPA 185
Query: 164 TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRP 223
+ Y TY GS T P C E + W++ +P+ ++ Q+ LR L P PL N+RP
Sbjct: 186 CRDYWTYHGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLFASAENEPPVPLVGNWRP 245
Query: 224 PQPLHHRPLRTN 235
PQP+ R +R +
Sbjct: 246 PQPIKGRVVRAS 257
>d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme II [TaxId: 9606]}
Length = 259
Score = 186 bits (472), Expect = 4e-59
Identities = 71/252 (28%), Positives = 125/252 (49%), Gaps = 23/252 (9%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG-LTNTGHSVVF 59
P W P KG RQSPV+++ YDP+L+P+ + + + N GH+
Sbjct: 12 PEHWHKDFP----IAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQATSLRILNNGHAFNV 67
Query: 60 TVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQL 119
+++ + + GGPL Y+ + H H+G D GSEH +++ + AE+ + +N++
Sbjct: 68 EFDDSQDKAV-LKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHWNTK- 125
Query: 120 YTNFSEALYRAQGVVAISLL----------------LQFPLSPGGAVEVKHLSIVGLLPE 163
Y +F +A+ + G+ + + L + G + + + GLLPE
Sbjct: 126 YGDFGKAVQQPDGLAVLGIFLKVGSAKPGLQKVVDVLDSIKTKGKSADFTNFDPRGLLPE 185
Query: 164 TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRP 223
+ Y TY GS+T P E VTWI+ +PI ++ +Q+ RKL P+ + +N+RP
Sbjct: 186 SLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQVLKFRKLNFNGEGEPEELMVDNWRP 245
Query: 224 PQPLHHRPLRTN 235
QPL +R ++ +
Sbjct: 246 AQPLKNRQIKAS 257
>d1keqa_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
liver, isozyme V [TaxId: 10090]}
Length = 238
Score = 184 bits (467), Expect = 2e-58
Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 18/236 (7%)
Query: 17 GRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG-LTNTGHSVVFTVENTTRYHINVTGGP 75
G RQSP+N++ +YDP L P+ + + L NTG++ +++ ++GGP
Sbjct: 1 GTRQSPINIQWKDSVYDPQLAPLRVSYDAASCRYLWNTGYAFQVEFDDSC-EDSGISGGP 59
Query: 76 LSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLYTNFSEALYRAQGVVA 135
L Y+ + H H+G D GSEH ++ + +PAE+ + +NS Y N +A G+
Sbjct: 60 LGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENCKKASVGENGLAV 119
Query: 136 ISLLLQFPLS----------------PGGAVEVKHLSIVGLLPETKYYMTYDGSITMPAC 179
I + L+ V + L+P + Y TY GS+T P
Sbjct: 120 IGVFLKLGAHHQALQKLVDVLPEVRHKDTQVAMGPFDPSCLMPACRDYWTYPGSLTTPPL 179
Query: 180 YETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRPLRTN 235
E+VTWI+ P+ ++ QL R L+ + + NNYRP QPL R LR++
Sbjct: 180 AESVTWIVQKTPVEVSPSQLSMFRTLLFSGRGEEEDVMVNNYRPLQPLRDRKLRSS 235
>d1rj6a_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme XIV [TaxId: 10090]}
Length = 259
Score = 183 bits (465), Expect = 5e-58
Identities = 75/258 (29%), Positives = 120/258 (46%), Gaps = 33/258 (12%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG----LTNTGHS 56
W PE C G QSP+N++ +++DP+L V G L N GH+
Sbjct: 11 QDHWPTSYPE---CG-GDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEPLDLHNNGHT 66
Query: 57 VVFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNM-GSEHVINEYVFPAEIQIFGF 115
V ++ + G L KY +LH+H+G + ++ GSEH IN AE+ + +
Sbjct: 67 VQLSLPP------TLHLGGLPRKYTAAQLHLHWGQRGSLEGSEHHINSEATAAELHVVHY 120
Query: 116 NSQLYTNFSEALYRAQGVVAISLL-----------------LQFPLSPGGAVEVKHLSIV 158
+SQ Y++ SEA + QG+ + +L L V S+
Sbjct: 121 DSQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRLHEIRYKDQKTSVPPFSVR 180
Query: 159 GLLPE-TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPL 217
L P+ + + Y+GS+T P CY++V W +FN+ I+ QL L++ + + P PL
Sbjct: 181 ELFPQQLEQFFRYNGSLTTPPCYQSVLWTVFNRRAQISMGQLEKLQETLSSTEEDPSEPL 240
Query: 218 GNNYRPPQPLHHRPLRTN 235
NYR PQPL+ R + +
Sbjct: 241 VQNYRVPQPLNQRTIFAS 258
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme IV [TaxId: 9606]}
Length = 262
Score = 178 bits (451), Expect = 7e-56
Identities = 62/259 (23%), Positives = 107/259 (41%), Gaps = 29/259 (11%)
Query: 1 PAFWGLINPE-WSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKI--RINGGLTNTGHSV 57
+ + + P W + RQSP+N+ +K D L + + N GHSV
Sbjct: 9 SSNYPCLVPVKWGGNCQKDRQSPINIVTTKAKVDKKLGRFFFSGYDKKQTWTVQNNGHSV 68
Query: 58 VFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNS 117
+ +EN +++GG L YQ +LH+H+ GSEH ++ F E+ I
Sbjct: 69 MMLLENKA----SISGGGLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHEKE 124
Query: 118 -QLYTNFSEALYRAQGVVAISLLLQF-----------------PLSPGGAVEVKHLSIVG 159
N EA + ++ L++ P + + S++
Sbjct: 125 KGTSRNVKEAQDPEDEIAVLAFLVEAGTQVNEGFQPLVEALSNIPKPEMSTTMAESSLLD 184
Query: 160 LL---PETKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAP 216
LL + ++Y Y GS+T P C E V W +F +PI + ++Q+ + + D K
Sbjct: 185 LLPKEEKLRHYFRYLGSLTTPTCDEKVVWTVFREPIQLHREQILAFSQKLYYD-KEQTVS 243
Query: 217 LGNNYRPPQPLHHRPLRTN 235
+ +N RP Q L R + +
Sbjct: 244 MKDNVRPLQQLGQRTVIKS 262
>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme IV [TaxId: 10090]}
Length = 258
Score = 167 bits (424), Expect = 8e-52
Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 23/253 (9%)
Query: 1 PAFWGLINPE-WSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKI--RINGGLTNTGHSV 57
+ PE W K +QSP+N+ ++ +P L P + + + N H+V
Sbjct: 9 DPRSSCLGPEKWPGACKENQQSPINIVTARTKVNPRLTPFILVGYDQKQQWPIKNNQHTV 68
Query: 58 VFTVENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNS 117
T+ + GG L +Y+ +LH+H+ ++ GSEH I+ F E+ I
Sbjct: 69 EMTLGGG----ACIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMHIVHKKL 124
Query: 118 QLYTNFSEALYRAQGVVA------------ISLLLQFPLSPGGAVEVKHLSIVGLLPE-- 163
S+ + + + L P V+ S+ +LP
Sbjct: 125 TSSKEDSKDKFAVLAFMIEVGDKVNKGFQPLVEALPSISKPHSTSTVRESSLQDMLPPST 184
Query: 164 -TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYR 222
Y Y+GS+T P C ETV W ++ +PI I K Q K + D + K + +N R
Sbjct: 185 KMYTYFRYNGSLTTPNCDETVIWTVYKQPIKIHKNQFLEFSKNLYYD-EDQKLNMKDNVR 243
Query: 223 PPQPLHHRPLRTN 235
P QPL R + +
Sbjct: 244 PLQPLGKRQVFKS 256
>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme XII [TaxId: 9606]}
Length = 260
Score = 166 bits (420), Expect = 3e-51
Identities = 75/259 (28%), Positives = 116/259 (44%), Gaps = 34/259 (13%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGG----LTNTGHS 56
W ++ C G QSP++L L YD +L P+ ++ LTN GHS
Sbjct: 10 ENSWSK---KYPSCG-GLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHS 65
Query: 57 VVFTVENTTRYHINVTGGPLSYKYQFHELHIHYG-LQDNMGSEHVINEYVFPAEIQIFGF 115
V + + ++ L +Y +LH+H+G D GSEH ++ F AE+ I +
Sbjct: 66 VKLNLPS------DMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHY 119
Query: 116 NSQLYTNFSEALYRAQGVVAISLL----------------LQFPLSPGGAVEVKHLSIVG 159
NS LY + S A +++G+ +++L LQ G V +I
Sbjct: 120 NSDLYPDASTASNKSEGLAVLAVLIEMGSFNPSYDKIFSHLQHVKYKGQEAFVPGFNIEE 179
Query: 160 LLPE-TKYYMTYDGSITMPACYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAP-- 216
LLPE T Y Y GS+T P C TV W +F P+ I+++QL L + +P
Sbjct: 180 LLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPRE 239
Query: 217 LGNNYRPPQPLHHRPLRTN 235
+ NN+R Q R + T+
Sbjct: 240 MINNFRQVQKFDERLVYTS 258
>d1kopa_ b.74.1.1 (A:) Carbonic anhydrase {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 223
Score = 141 bits (356), Expect = 3e-42
Identities = 53/233 (22%), Positives = 84/233 (36%), Gaps = 26/233 (11%)
Query: 1 PAFWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRPVHIDKIRINGGLTNTGHSVVFT 60
P WG ++ E+ LC+ G+ QSPVN+ + L + ++ + N GH++
Sbjct: 12 PESWGNLSEEFRLCSTGKNQSPVNITET---VSGKLPAIKVNYKPSMVDVENNGHTIQVN 68
Query: 61 VENTTRYHINVTGGPLSYKYQFHELHIHYGLQDNMGSEHVINEYVFPAEIQIFGFNSQLY 120
T Y + H H SE+ I FP E +
Sbjct: 69 YPEG-----GNTLTVNGRTYTLKQFHFHVP------SENQIKGRTFPMEAHFVHLDENKQ 117
Query: 121 TNFSEALYRAQGVVAI--SLLLQFPLSPGGAVEVKHLSIVGLLPETKYYMTYDGSITMPA 178
LY A S+ P++ G + LLP+ Y + GS+T P
Sbjct: 118 PLVLAVLYEAGKTNGRLSSIWNVMPMTAGKVKLNQPFDASTLLPKRLKYYRFAGSLTTPP 177
Query: 179 CYETVTWIIFNKPIYITKQQLHGLRKLMQGDMKHPKAPLGNNYRPPQPLHHRP 231
C E V+W++ +I + Q + + N RP QPL+ R
Sbjct: 178 CTEGVSWLVLKTYDHIDQAQAEKFTRAV----------GSENNRPVQPLNARV 220
>d1quba5 g.18.1.1 (A:244-326) beta2-glycoprotein I {Human (Homo
sapiens) [TaxId: 9606]}
Length = 76
Score = 25.9 bits (57), Expect = 1.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 171 DGSITMPACYETVTWIIFNKP 191
DG+I +P C++ T KP
Sbjct: 55 DGTIEVPKCFKEHTDASDVKP 75
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus
[TaxId: 155077]}
Length = 364
Score = 25.6 bits (55), Expect = 6.6
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 3 FWGLINPEWSLCNKGRRQSPVNLEPSKLLYDPNLRP 38
WG + L R Q LL+D N
Sbjct: 309 VWGTTDANTWLDGLYREQFEDEKISWPLLFDNNYND 344
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 25.5 bits (54), Expect = 8.0
Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 50 LTNTGHSVVFTVENTTRYHINVTGGPL-SYKYQFHELHIHYGLQDNMGSEHVINEYVF 106
L VF+ +T++ + ++ + + + I G+ + E +
Sbjct: 25 LAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDISDGVPEGYVFAGRPQEDIE 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.440
Gapped
Lambda K H
0.267 0.0469 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,020,581
Number of extensions: 47540
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 16
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)