BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16208
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 20 LGIDNVGGVFVVLIAGCGVSFLFSLLEFLWNVRKVA 55
L + NV GVF +L+ G G++ L +L+EF + R A
Sbjct: 778 LSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEA 813
>pdb|4IHC|A Chain A, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|B Chain B, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|C Chain C, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|D Chain D, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|E Chain E, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|F Chain F, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|G Chain G, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|H Chain H, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
Length = 440
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 35 GCGVSFLFSLLEFLWNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKS 94
G G+ F+ + E + V + + + L PY+ F LE A + +R+++STP
Sbjct: 238 GFGIEFIHDVHERVTPVTAIQLAKTLEPYQLFYLEDPVAPENIDWLRMLRQQSSTPISMG 297
Query: 95 NSLANLD----LFNNKM 107
N++ L +NK+
Sbjct: 298 ELFVNINEWKPLIDNKL 314
>pdb|3IYN|M Chain M, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IZO|A Chain A, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|B Chain B, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|C Chain C, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|D Chain D, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|E Chain E, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|1VSZ|N Chain N, Crystal Structure Of Human Adenovirus At 3.5a
Length = 571
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 14 ETDNPELGIDNVGGVF-------------VVLIAGCGVSFLFSLLEFLWNVRK 53
+T N LG D V G+ ++L+ GCGV F S L L +RK
Sbjct: 211 DTRNFRLGFDPVTGLVMPGVYTNEAFHPDIILLPGCGVDFTHSRLSNLLGIRK 263
>pdb|1X9P|A Chain A, The Crystal Structure Of Human Adenovirus 2 Penton Base
pdb|1X9T|A Chain A, The Crystal Structure Of Human Adenovirus 2 Penton Base In
Complex With An Ad2 N-Terminal Fibre Peptide
pdb|2C9G|A Chain A, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Base Dodecahedron
pdb|2C9G|B Chain B, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Base Dodecahedron
pdb|2C9G|C Chain C, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Base Dodecahedron
pdb|2C9G|D Chain D, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Base Dodecahedron
pdb|2C9G|E Chain E, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Base Dodecahedron
pdb|2C9F|A Chain A, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Dodecahedron
pdb|2C9F|B Chain B, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Dodecahedron
pdb|2C9F|C Chain C, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Dodecahedron
pdb|2C9F|D Chain D, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Dodecahedron
pdb|2C9F|E Chain E, The Quasi-Atomic Model Of The Adenovirus Type 3 Penton
Dodecahedron
pdb|2BLD|A Chain A, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 1)
pdb|2BLD|B Chain B, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 1)
pdb|2BLD|C Chain C, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 1)
pdb|2BLD|D Chain D, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 1)
pdb|2BLD|E Chain E, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 1)
Length = 523
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 14 ETDNPELGIDNVGGVF-------------VVLIAGCGVSFLFSLLEFLWNVRK 53
+T N LG D V G+ ++L+ GCGV F S L L +RK
Sbjct: 163 DTRNFRLGFDPVTGLVMPGVYTNEAFHPDIILLPGCGVDFTHSRLSNLLGIRK 215
>pdb|2C6S|A Chain A, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|B Chain B, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|C Chain C, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|D Chain D, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|E Chain E, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|F Chain F, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|G Chain G, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|H Chain H, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|I Chain I, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|J Chain J, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|K Chain K, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|L Chain L, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|M Chain M, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|N Chain N, Human Adenovirus Penton Base 2 12 Chimera
pdb|2C6S|O Chain O, Human Adenovirus Penton Base 2 12 Chimera
Length = 523
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 14 ETDNPELGIDNVGGVF-------------VVLIAGCGVSFLFSLLEFLWNVRK 53
+T N LG D V G+ ++L+ GCGV F S L L +RK
Sbjct: 163 DTRNFRLGFDPVTGLVMPGVYTNEAFHPDIILLPGCGVDFTHSRLSNLLGIRK 215
>pdb|1V0C|A Chain A, Structure Of Aac(6')-Ib In Complex With Kanamycin C And
Acetylcoa.
pdb|2BUE|A Chain A, Structure Of Aac(6')-Ib In Complex With Ribostamycin And
Coenzyme A.
pdb|2VQY|A Chain A, Structure Of Aac(6')-Ib In Complex With Parmomycin And
Acetylcoa
Length = 202
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 12 EDETDNPELGIDNVGGVFVVLIAGCGVSFLFSLLEFLWNVRKVA-VEEKLSPYEAFMLEL 70
E+ETD GID + L G G + +L+E L+N +V ++ SP
Sbjct: 107 EEETDPGVRGIDQLLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNL----- 161
Query: 71 KFAIRCY 77
AIRCY
Sbjct: 162 -RAIRCY 167
>pdb|2PRB|A Chain A, Crystal Structure Of Aminoglycoside Acetyltransferase
Aac(6')-Ib In Complex Whith Coenzyme A
pdb|2QIR|A Chain A, Crystal Structure Of Aminoglycoside Acetyltransferase
Aac(6')-Ib In Complex Whith Coenzyme A And Kanamycin
Length = 196
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 12 EDETDNPELGIDNVGGVFVVLIAGCGVSFLFSLLEFLWNVRKVA-VEEKLSPYEAFMLEL 70
E+ETD GID + L G G + +L+E L+N +V ++ SP L
Sbjct: 94 EEETDPGVRGIDQLLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPS-----NL 148
Query: 71 KFAIRCY 77
+ AIRCY
Sbjct: 149 R-AIRCY 154
>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide
pdb|4H39|A Chain A, Crystal Structure Of Jnk3 In Complex With Jip1 Peptide
pdb|4H3B|A Chain A, Crystal Structure Of Jnk3 In Complex With Sab Peptide
pdb|4H3B|C Chain C, Crystal Structure Of Jnk3 In Complex With Sab Peptide
Length = 356
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 228 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 283
>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3
Length = 355
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 227 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 282
>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3
Length = 356
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 228 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 283
>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With
Mgamp-Pnp
Length = 423
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 272 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 327
>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious
Tri-Substituted Thiophene Based Jnk Inhibitor
Length = 363
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 234 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 289
>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMQ|A Chain A, The Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMU|A Chain A, The Crystal Structure Of Jnk3 In Complex With A
Phenantroline Inhibitor
pdb|1PMV|A Chain A, The Structure Of Jnk3 In Complex With A
Dihydroanthrapyrazole Inhibitor
Length = 364
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 235 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 290
>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And
Thiazole Based Inhibitors Of Jnk For The Treatment Of
Neurodegenerative Diseases
pdb|3OY1|A Chain A, Highly Selective C-Jun N-Terminal Kinase (Jnk) 2 And 3
Inhibitors With In Vitro Cns-Like Pharmacokinetic
Properties
Length = 362
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 233 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 288
>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2P33|A Chain A, Synthesis And Sar Of Aminopyrimidines As Novel C-Jun N-
Terminal Kinase (Jnk) Inhibitors
pdb|3CGF|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3CGO|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3G90|X Chain X, Jnk-3 Bound To
(Z)-5-Fluoro-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)
Methyl)-3-(Hydroxyimino)indolin-2-One
pdb|3G9N|A Chain A, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Phenylindolin-2-One
pdb|3G9L|X Chain X, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Styrylindolin-2-One
Length = 365
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 235 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 290
>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
pdb|2R9S|B Chain B, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
Length = 356
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 227 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 282
>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-{3-Cyano-6-[3-(1-
Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2,
3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide
pdb|2O2U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Cyano-4,5,6,7-
Tetrahydro-1-Benzothien-2-Yl)-2-Fluorobenzamide
pdb|2ZDT|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|2ZDU|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|3DA6|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Methyl-
4-(3-(2-(Methylamino)pyrimidin-4-Yl)pyridin-2-Yloxy)
Naphthalen-1-Yl)-1h-Benzo[d]imidazol-2-Amine
pdb|2WAJ|A Chain A, Crystal Structure Of Human Jnk3 Complexed With A
1-Aryl-3,4- Dihydroisoquinoline Inhibitor
pdb|3V6R|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6R|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
Length = 364
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 234 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 289
>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk
Inhibitor For The Prevention Of Ischemia-Reperfusion
Injury
pdb|3TTI|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-930, An Orally
Active Anti-Fibrotic Jnk Inhibitor
Length = 464
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 272 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 327
>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562
Length = 364
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 234 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 289
>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774
Length = 355
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 234 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 289
>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737
Length = 364
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 234 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 289
>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor,
Sr- 3451
Length = 353
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 49 WNVRKVAVEEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLFNNKM 107
WN KV +E+ +P FM +L+ +R Y ++P + P L +SL D +NK+
Sbjct: 234 WN--KV-IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKL 289
>pdb|4AQQ|A Chain A, Dodecahedron Formed Of Penton Base Protein From Adenovirus
Ad3
pdb|4AR2|A Chain A, Dodecahedron Formed Of Penton Base Protein From Adenovirus
Ad3
Length = 509
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 30 VVLIAGCGVSFLFSLLEFLWNVRK 53
+VL+ GCGV F S L L +RK
Sbjct: 249 IVLLPGCGVDFTESRLSNLLGIRK 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,098,037
Number of Sequences: 62578
Number of extensions: 104129
Number of successful extensions: 201
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 23
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)