Query psy16208
Match_columns 116
No_of_seqs 131 out of 326
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:34:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 98.2 3.7E-07 1.3E-11 77.6 2.2 55 5-59 759-817 (823)
2 2jwa_A Receptor tyrosine-prote 62.9 8.8 0.0003 22.3 3.3 22 33-54 18-39 (44)
3 1ym0_B Fibrinotic enzyme compo 59.5 6.6 0.00022 20.3 2.1 19 3-21 4-23 (27)
4 2ks1_B Epidermal growth factor 53.0 13 0.00045 21.4 2.9 21 32-52 17-37 (44)
5 2l2t_A Receptor tyrosine-prote 41.4 16 0.00056 21.1 2.1 21 32-52 16-36 (44)
6 2klu_A T-cell surface glycopro 37.4 7.2 0.00025 24.8 0.1 40 30-69 12-53 (70)
7 4b19_A PEPA1; toxin, toxin apo 20.5 52 0.0018 17.6 1.6 23 29-51 4-26 (30)
8 2kv5_A FST, putative uncharact 16.9 35 0.0012 18.6 0.4 26 28-53 4-29 (33)
9 3rko_A NADH-quinone oxidoreduc 15.8 99 0.0034 21.8 2.6 39 23-62 11-49 (147)
10 2k1k_A Ephrin type-A receptor 14.6 82 0.0028 17.3 1.5 10 19-28 7-16 (38)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=98.22 E-value=3.7e-07 Score=77.56 Aligned_cols=55 Identities=31% Similarity=0.579 Sum_probs=39.9
Q ss_pred ccCCCCCCCCC---CCC-CcccccccceeehhhhHHHHHHHHHHHHHHHHhhhhhcccC
Q psy16208 5 MDTLQKDEDET---DNP-ELGIDNVGGVFVVLIAGCGVSFLFSLLEFLWNVRKVAVEEK 59 (116)
Q Consensus 5 ~~~g~C~~~~~---~~~-~L~l~nvgGVF~VL~~Gl~la~vvai~Efl~~~rk~a~~ek 59 (116)
.+.+.|...+. .+. +|+++++.|+|++|++|+++|+++.++|++|+.++.+++.+
T Consensus 759 ~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~~~~ 817 (823)
T 3kg2_A 759 YDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMK 817 (823)
T ss_dssp TTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred cCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhhhhcc
Confidence 46788986543 244 89999999999999999999999999999998887766544
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=62.88 E-value=8.8 Score=22.30 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh
Q psy16208 33 IAGCGVSFLFSLLEFLWNVRKV 54 (116)
Q Consensus 33 ~~Gl~la~vvai~Efl~~~rk~ 54 (116)
++|+++.+++++.-++|-.|+.
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhheehhh
Confidence 4456666666677677755554
No 3
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=59.49 E-value=6.6 Score=20.30 Aligned_cols=19 Identities=5% Similarity=-0.066 Sum_probs=13.2
Q ss_pred ccccCCCCCCCCCCCC-Ccc
Q psy16208 3 SVMDTLQKDEDETDNP-ELG 21 (116)
Q Consensus 3 ~~~~~g~C~~~~~~~~-~L~ 21 (116)
-||.+|+|....-+++ .+.
T Consensus 4 vwypggqcgvsqysdagdme 23 (27)
T 1ym0_B 4 VWYPGGQCGVSQYSDAGDME 23 (27)
T ss_dssp CSCTTSCCSCCSSTTTTCCC
T ss_pred eeccCCcccceecccccccc
Confidence 4899999987655554 443
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=52.96 E-value=13 Score=21.41 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q psy16208 32 LIAGCGVSFLFSLLEFLWNVR 52 (116)
Q Consensus 32 L~~Gl~la~vvai~Efl~~~r 52 (116)
.++|+++.+++++.-|+|-.|
T Consensus 17 VVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 344555544555544444333
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=41.36 E-value=16 Score=21.06 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q psy16208 32 LIAGCGVSFLFSLLEFLWNVR 52 (116)
Q Consensus 32 L~~Gl~la~vvai~Efl~~~r 52 (116)
.++|+++-+++++.-|+|-.|
T Consensus 16 VVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred ehHHHHHHHHHHHHHHHHhhh
Confidence 344555555555554544333
No 6
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=37.42 E-value=7.2 Score=24.80 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=20.1
Q ss_pred ehhhhHHHHHHHHHHHHHHH-Hhhhh-hcccCCChHHHHHHh
Q psy16208 30 VVLIAGCGVSFLFSLLEFLW-NVRKV-AVEEKLSPYEAFMLE 69 (116)
Q Consensus 30 ~VL~~Gl~la~vvai~Efl~-~~rk~-a~~ekvs~~~al~~E 69 (116)
+||+.+..+-++..++-|+. +.+.. -.-|+.|--.-+..|
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrqAeRMSQikrlLsE 53 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAERMSQIKRLLSE 53 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCTTSSHHHHHHHS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 35666666666666666632 22222 122345654445555
No 7
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=20.50 E-value=52 Score=17.56 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=13.1
Q ss_pred eehhhhHHHHHHHHHHHHHHHHh
Q psy16208 29 FVVLIAGCGVSFLFSLLEFLWNV 51 (116)
Q Consensus 29 F~VL~~Gl~la~vvai~Efl~~~ 51 (116)
|+-++.-++.+++++++.-+.+.
T Consensus 4 fv~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp GTSSTTTTHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHHHHHHh
Confidence 44455556666677766654433
No 8
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=16.85 E-value=35 Score=18.61 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=17.1
Q ss_pred eeehhhhHHHHHHHHHHHHHHHHhhh
Q psy16208 28 VFVVLIAGCGVSFLFSLLEFLWNVRK 53 (116)
Q Consensus 28 VF~VL~~Gl~la~vvai~Efl~~~rk 53 (116)
+|-.+++=+++++++.+++-+.+.|.
T Consensus 4 i~~~IIaPivVGvvl~L~d~WLn~r~ 29 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMISRVLDEED 29 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34556666778888888876554444
No 9
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=15.82 E-value=99 Score=21.77 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=20.5
Q ss_pred ccccceeehhhhHHHHHHHHHHHHHHHHhhhhhcccCCCh
Q psy16208 23 DNVGGVFVVLIAGCGVSFLFSLLEFLWNVRKVAVEEKLSP 62 (116)
Q Consensus 23 ~nvgGVF~VL~~Gl~la~vvai~Efl~~~rk~a~~ekvs~ 62 (116)
.+-..+++.+++++++++++.++-++... +...++|.|.
T Consensus 11 ~~y~~i~i~~~~~~~l~~~l~~l~~~l~~-~~~~~eK~sp 49 (147)
T 3rko_A 11 AHHWAFAIFLIVAIGLCCLMLVGGWFLGG-RARARSKNVP 49 (147)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHH-HHHCC-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcccCCC
Confidence 34456677777777787777777766653 3355666554
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=14.58 E-value=82 Score=17.26 Aligned_cols=10 Identities=20% Similarity=0.079 Sum_probs=4.9
Q ss_pred Ccccccccce
Q psy16208 19 ELGIDNVGGV 28 (116)
Q Consensus 19 ~L~l~nvgGV 28 (116)
.|+-..++|+
T Consensus 7 ~ls~GaIAGi 16 (38)
T 2k1k_A 7 GLTGGEIVAV 16 (38)
T ss_dssp TCCHHHHHHH
T ss_pred CCCCCceeee
Confidence 3544445554
Done!