Query psy16208
Match_columns 116
No_of_seqs 131 out of 326
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 23:35:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16208.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16208hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 62.4 1 7.3E-05 23.0 0.5 21 25-45 3-23 (32)
2 d2piaa2 c.25.1.2 (A:104-223) P 19.5 23 0.0016 20.9 1.6 24 27-50 9-32 (120)
3 d2cnda2 c.25.1.1 (A:125-270) N 17.6 28 0.002 20.8 1.7 22 30-51 16-37 (146)
4 d2bmwa2 c.25.1.1 (A:142-303) F 16.2 29 0.0021 21.1 1.6 20 30-49 10-29 (162)
5 d1krha2 c.25.1.2 (A:206-338) B 16.1 32 0.0023 20.8 1.7 21 30-50 9-29 (133)
6 d1ddga2 c.25.1.4 (A:447-599) S 16.0 28 0.002 21.3 1.5 21 30-50 10-30 (153)
7 d1aila_ a.16.1.1 (A:) N-termin 16.0 35 0.0026 19.8 1.8 23 46-68 13-38 (70)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 15.2 40 0.0029 16.4 1.6 12 30-41 6-17 (30)
9 d1qfja2 c.25.1.1 (A:98-232) NA 15.0 23 0.0016 21.4 0.7 21 30-50 9-29 (135)
10 d1cqxa3 c.25.1.5 (A:262-403) F 14.4 21 0.0016 21.6 0.5 20 29-48 8-27 (142)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=62.38 E-value=1 Score=22.99 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=13.0
Q ss_pred ccceeehhhhHHHHHHHHHHH
Q psy16208 25 VGGVFVVLIAGCGVSFLFSLL 45 (116)
Q Consensus 25 vgGVF~VL~~Gl~la~vvai~ 45 (116)
+|.|||+..+.+.+++.++++
T Consensus 3 lgavfyivfialffgiavgii 23 (32)
T d2e74e1 3 LGAVFYIVFIALFFGIAVGII 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHHhhhe
Confidence 456777766666666555554
No 2
>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}
Probab=19.52 E-value=23 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=19.8
Q ss_pred ceeehhhhHHHHHHHHHHHHHHHH
Q psy16208 27 GVFVVLIAGCGVSFLFSLLEFLWN 50 (116)
Q Consensus 27 GVF~VL~~Gl~la~vvai~Efl~~ 50 (116)
.=.++++.|.+++-++++++-+-.
T Consensus 9 ~~~v~IagGtGiaP~~s~~~~l~~ 32 (120)
T d2piaa2 9 KSFILVAGGIGITPMLSMARQLRA 32 (120)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred CCEEEEEecccHHHHHHHHHHHHH
Confidence 345779999999999999998743
No 3
>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}
Probab=17.65 E-value=28 Score=20.82 Aligned_cols=22 Identities=9% Similarity=0.449 Sum_probs=18.7
Q ss_pred ehhhhHHHHHHHHHHHHHHHHh
Q psy16208 30 VVLIAGCGVSFLFSLLEFLWNV 51 (116)
Q Consensus 30 ~VL~~Gl~la~vvai~Efl~~~ 51 (116)
+.++.|.+++.++++++-+...
T Consensus 16 v~IAgGtGIaP~~s~l~~~~~~ 37 (146)
T d2cnda2 16 AMICGGSGITPMYQIIQAVLRD 37 (146)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHT
T ss_pred EEEeceEEHhHHHHHHHHHHHh
Confidence 5678999999999999987654
No 4
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}
Probab=16.19 E-value=29 Score=21.14 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=17.4
Q ss_pred ehhhhHHHHHHHHHHHHHHH
Q psy16208 30 VVLIAGCGVSFLFSLLEFLW 49 (116)
Q Consensus 30 ~VL~~Gl~la~vvai~Efl~ 49 (116)
+.+++|++++-++++++-+.
T Consensus 10 llIagGtGIaP~~s~l~~~~ 29 (162)
T d2bmwa2 10 IMLAGGTGITPMRTYLWRMF 29 (162)
T ss_dssp EEEEEGGGHHHHHHHHHHHH
T ss_pred EEEEcceeHHHHHHHHHHHH
Confidence 56789999999999998765
No 5
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=16.15 E-value=32 Score=20.81 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=17.6
Q ss_pred ehhhhHHHHHHHHHHHHHHHH
Q psy16208 30 VVLIAGCGVSFLFSLLEFLWN 50 (116)
Q Consensus 30 ~VL~~Gl~la~vvai~Efl~~ 50 (116)
+.++.|++++.++++++-+..
T Consensus 9 v~IAgG~GItP~~s~l~~~~~ 29 (133)
T d1krha2 9 LMLAGGTGIAPFLSMLQVLEQ 29 (133)
T ss_dssp EEEEEGGGHHHHHHHHHHHHH
T ss_pred EEEEccHhHHHHHHHHHHHHH
Confidence 456899999999999997654
No 6
>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}
Probab=16.04 E-value=28 Score=21.28 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=17.9
Q ss_pred ehhhhHHHHHHHHHHHHHHHH
Q psy16208 30 VVLIAGCGVSFLFSLLEFLWN 50 (116)
Q Consensus 30 ~VL~~Gl~la~vvai~Efl~~ 50 (116)
+.++.|.++|-+.++++-+..
T Consensus 10 vlIa~GtGIaP~~s~l~~~~~ 30 (153)
T d1ddga2 10 IMIGPGTGIAPFRAFMQQRAA 30 (153)
T ss_dssp EEECCGGGGHHHHHHHHHHHH
T ss_pred EEEECchhHHHHHHHHHHHHH
Confidence 568999999999999987654
No 7
>d1aila_ a.16.1.1 (A:) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza A virus [TaxId: 11320]}
Probab=15.95 E-value=35 Score=19.80 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=14.9
Q ss_pred HHHHHhhhhhcccCC---ChHHHHHH
Q psy16208 46 EFLWNVRKVAVEEKL---SPYEAFML 68 (116)
Q Consensus 46 Efl~~~rk~a~~ekv---s~~~al~~ 68 (116)
-|+|++||....... +|-+-+..
T Consensus 13 cfLWHvRkrfad~~lgDAPfldrlRR 38 (70)
T d1aila_ 13 CFLWHVRKQVVDQELGDAPFLDRLRR 38 (70)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHhhccccCCchHHHHHH
Confidence 379999998666553 45444443
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.22 E-value=40 Score=16.40 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=5.6
Q ss_pred ehhhhHHHHHHH
Q psy16208 30 VVLIAGCGVSFL 41 (116)
Q Consensus 30 ~VL~~Gl~la~v 41 (116)
||++..|+++++
T Consensus 6 yv~ifac~i~lf 17 (30)
T d2axtt1 6 YVFIFACIIALF 17 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 445544444443
No 9
>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}
Probab=14.97 E-value=23 Score=21.39 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.1
Q ss_pred ehhhhHHHHHHHHHHHHHHHH
Q psy16208 30 VVLIAGCGVSFLFSLLEFLWN 50 (116)
Q Consensus 30 ~VL~~Gl~la~vvai~Efl~~ 50 (116)
+.++.|.+++.++++++-+-.
T Consensus 9 v~IagGtGiaP~~s~l~~~~~ 29 (135)
T d1qfja2 9 ILIAGGTGFSYARSILLTALA 29 (135)
T ss_dssp EEEEETTCHHHHHHHHHHHHH
T ss_pred EEEECceeHHHHHHHHHHHHH
Confidence 568999999999999998753
No 10
>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=14.37 E-value=21 Score=21.59 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=16.9
Q ss_pred eehhhhHHHHHHHHHHHHHH
Q psy16208 29 FVVLIAGCGVSFLFSLLEFL 48 (116)
Q Consensus 29 F~VL~~Gl~la~vvai~Efl 48 (116)
.+.++.|.+++-++++++.+
T Consensus 8 lvliagGtGIaP~~sil~~~ 27 (142)
T d1cqxa3 8 IVLISGGVGLTPMVSMLKVA 27 (142)
T ss_dssp EEEEESSCCHHHHHHHHHHH
T ss_pred EEEEEcceeHHHHHHHHHHH
Confidence 35688999999999999865
Done!