RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16208
         (116 letters)



>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 213

 Score = 26.5 bits (58), Expect = 0.64
 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 3/47 (6%)

Query: 57  EEKLSPYEAFMLELKFAIRCYGTSKPVRRKASTPSLKSNSLANLDLF 103
            E  +   A+M   K      G   P R+  S   LK +     +  
Sbjct: 8   PETAAKMSAYM---KHQFVFAGIPAPERQALSKQLLKESHTWPKEKL 51


>d1uoka1 b.71.1.1 (A:480-558) Oligo-1,6-glucosidase {Bacillus
          cereus [TaxId: 1396]}
          Length = 79

 Score = 24.0 bits (52), Expect = 2.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 60 LSPYEAFMLELK 71
          L PYEA + +LK
Sbjct: 68 LRPYEAMVFKLK 79


>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
          {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 23.8 bits (51), Expect = 4.8
 Identities = 5/14 (35%), Positives = 10/14 (71%)

Query: 20 LGIDNVGGVFVVLI 33
          LG++ +GG+   +I
Sbjct: 8  LGLETMGGLVEKVI 21


>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId:
          562]}
          Length = 118

 Score = 23.7 bits (51), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 20 LGIDNVGGVFVVLI 33
          LGI+ +GGV   LI
Sbjct: 11 LGIETMGGVMTTLI 24


>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 159

 Score = 23.4 bits (50), Expect = 7.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 20 LGIDNVGGVFVVLI 33
          LGI+  GGV  VLI
Sbjct: 17 LGIETAGGVMTVLI 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 409,398
Number of extensions: 17385
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 7
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)