Query psy1621
Match_columns 224
No_of_seqs 157 out of 2056
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 23:37:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328|consensus 100.0 1.1E-40 2.3E-45 259.9 11.8 221 1-224 175-400 (400)
2 KOG0330|consensus 100.0 2.7E-37 5.9E-42 249.8 11.5 214 1-218 210-428 (476)
3 KOG0326|consensus 100.0 7E-37 1.5E-41 242.2 9.6 218 1-222 233-454 (459)
4 COG0513 SrmB Superfamily II DN 100.0 6E-36 1.3E-40 261.3 15.6 211 1-214 180-398 (513)
5 KOG0333|consensus 100.0 2.5E-35 5.4E-40 246.1 16.7 193 24-220 451-648 (673)
6 PRK04837 ATP-dependent RNA hel 100.0 7.7E-35 1.7E-39 250.2 14.7 218 1-222 163-387 (423)
7 KOG0331|consensus 100.0 7.1E-35 1.5E-39 247.8 12.3 217 2-222 246-473 (519)
8 PRK11776 ATP-dependent RNA hel 100.0 4.8E-34 1E-38 247.7 16.6 212 1-216 153-368 (460)
9 PTZ00110 helicase; Provisional 100.0 1.1E-33 2.5E-38 248.9 15.8 219 1-223 283-510 (545)
10 PRK04537 ATP-dependent RNA hel 100.0 2.3E-33 5E-38 247.9 17.6 213 1-217 165-384 (572)
11 PRK10590 ATP-dependent RNA hel 100.0 3.1E-33 6.7E-38 242.2 16.3 211 1-215 155-370 (456)
12 PRK11634 ATP-dependent RNA hel 100.0 3.6E-33 7.8E-38 248.3 16.7 214 1-218 155-373 (629)
13 PLN00206 DEAD-box ATP-dependen 100.0 5.7E-33 1.2E-37 243.6 16.1 218 1-222 276-500 (518)
14 PTZ00424 helicase 45; Provisio 100.0 5.2E-33 1.1E-37 237.5 14.9 219 1-222 176-399 (401)
15 KOG0332|consensus 100.0 1.3E-32 2.8E-37 221.8 15.9 214 2-218 239-465 (477)
16 PRK11192 ATP-dependent RNA hel 100.0 1.9E-32 4E-37 236.3 17.2 213 1-215 153-370 (434)
17 PRK01297 ATP-dependent RNA hel 100.0 3.2E-32 6.9E-37 237.1 18.3 210 1-214 243-459 (475)
18 KOG0340|consensus 100.0 3E-32 6.6E-37 218.3 13.4 216 1-219 159-383 (442)
19 KOG0342|consensus 100.0 1.5E-32 3.2E-37 228.0 12.0 204 1-207 236-447 (543)
20 KOG0345|consensus 100.0 5.5E-32 1.2E-36 223.6 12.0 204 1-209 163-375 (567)
21 KOG0327|consensus 100.0 6E-32 1.3E-36 218.7 11.9 217 2-224 176-397 (397)
22 KOG0336|consensus 100.0 7.6E-31 1.6E-35 214.0 12.0 216 2-221 374-596 (629)
23 KOG0341|consensus 100.0 1.4E-31 3.1E-36 217.0 6.5 216 1-221 332-553 (610)
24 TIGR00614 recQ_fam ATP-depende 100.0 9.3E-30 2E-34 221.2 16.8 203 1-206 133-342 (470)
25 KOG0335|consensus 100.0 1.2E-29 2.6E-34 212.9 15.2 197 21-221 258-468 (482)
26 PRK11057 ATP-dependent DNA hel 100.0 1.8E-29 3.9E-34 225.0 17.2 202 1-206 145-352 (607)
27 KOG0343|consensus 100.0 6.5E-30 1.4E-34 214.9 12.4 195 23-222 244-447 (758)
28 PLN03137 ATP-dependent DNA hel 100.0 2.7E-29 5.9E-34 229.1 16.6 205 1-207 587-797 (1195)
29 TIGR01389 recQ ATP-dependent D 100.0 5.9E-29 1.3E-33 221.8 15.5 203 1-206 133-340 (591)
30 KOG0338|consensus 100.0 5.2E-30 1.1E-34 213.8 7.5 183 23-208 356-544 (691)
31 COG0514 RecQ Superfamily II DN 100.0 1.6E-28 3.5E-33 212.5 14.1 182 25-208 166-348 (590)
32 TIGR03817 DECH_helic helicase/ 100.0 5.1E-28 1.1E-32 219.2 16.2 189 24-218 193-409 (742)
33 KOG0339|consensus 100.0 4E-28 8.6E-33 202.6 12.4 220 1-223 376-601 (731)
34 KOG0344|consensus 100.0 5.2E-28 1.1E-32 204.9 11.6 217 1-217 294-515 (593)
35 KOG0346|consensus 99.9 1.3E-27 2.9E-32 196.4 10.7 207 1-211 176-424 (569)
36 KOG0348|consensus 99.9 1.7E-25 3.7E-30 187.9 13.4 181 24-208 330-565 (708)
37 PRK10689 transcription-repair 99.9 1E-24 2.2E-29 204.0 16.6 198 1-208 728-936 (1147)
38 TIGR00580 mfd transcription-re 99.9 1.8E-24 3.9E-29 198.6 16.8 198 1-208 579-787 (926)
39 KOG4284|consensus 99.9 3.8E-25 8.3E-30 189.3 10.6 195 1-198 173-380 (980)
40 KOG0347|consensus 99.9 1.3E-26 2.8E-31 195.1 1.4 123 90-212 463-585 (731)
41 KOG0334|consensus 99.9 2.8E-24 6.2E-29 192.4 14.2 214 1-220 521-743 (997)
42 PHA02653 RNA helicase NPH-II; 99.9 5.3E-24 1.1E-28 189.7 15.2 197 1-206 297-523 (675)
43 TIGR01587 cas3_core CRISPR-ass 99.9 3.6E-24 7.8E-29 180.5 9.7 190 1-198 130-337 (358)
44 PRK13767 ATP-dependent helicas 99.9 3.4E-23 7.3E-28 191.1 15.3 107 90-196 284-397 (876)
45 KOG0337|consensus 99.9 3.1E-24 6.7E-29 175.8 7.1 192 23-218 193-389 (529)
46 PRK10917 ATP-dependent DNA hel 99.9 5.7E-23 1.2E-27 185.4 15.4 108 89-196 470-588 (681)
47 KOG0350|consensus 99.9 2.6E-23 5.6E-28 173.5 11.6 183 25-211 360-554 (620)
48 PRK02362 ski2-like helicase; P 99.9 7.7E-23 1.7E-27 186.5 15.4 119 77-197 232-397 (737)
49 TIGR00643 recG ATP-dependent D 99.9 7.7E-23 1.7E-27 183.3 15.1 107 89-195 447-564 (630)
50 TIGR01970 DEAH_box_HrpB ATP-de 99.9 4E-23 8.7E-28 187.9 13.3 191 1-200 119-339 (819)
51 PRK04914 ATP-dependent helicas 99.9 9.7E-23 2.1E-27 186.9 15.8 137 75-211 478-617 (956)
52 PRK09751 putative ATP-dependen 99.9 1.3E-22 2.9E-27 191.6 16.4 127 89-215 243-405 (1490)
53 cd00079 HELICc Helicase superf 99.9 2.6E-22 5.6E-27 145.1 13.9 118 76-193 12-131 (131)
54 KOG0351|consensus 99.9 1.3E-22 2.8E-27 184.8 14.6 179 26-207 421-602 (941)
55 PRK12898 secA preprotein trans 99.9 2.1E-22 4.6E-27 177.5 13.7 164 29-198 412-587 (656)
56 TIGR02621 cas3_GSU0051 CRISPR- 99.9 1E-22 2.3E-27 183.2 11.8 153 26-188 206-381 (844)
57 PRK11131 ATP-dependent RNA hel 99.9 4.4E-22 9.5E-27 185.4 13.2 192 1-200 192-414 (1294)
58 PRK11664 ATP-dependent RNA hel 99.9 4.8E-22 1E-26 181.1 12.4 169 23-200 147-342 (812)
59 COG1111 MPH1 ERCC4-like helica 99.9 2.4E-21 5.3E-26 162.5 14.2 123 74-197 346-481 (542)
60 COG1202 Superfamily II helicas 99.9 2.6E-22 5.7E-27 170.2 8.3 169 25-199 372-555 (830)
61 PRK00254 ski2-like helicase; P 99.9 2.9E-21 6.3E-26 175.8 14.9 188 1-198 144-389 (720)
62 PRK01172 ski2-like helicase; P 99.9 4.3E-21 9.3E-26 173.8 14.4 108 89-197 235-378 (674)
63 PF00271 Helicase_C: Helicase 99.8 8.6E-21 1.9E-25 125.3 8.8 78 108-185 1-78 (78)
64 TIGR01967 DEAH_box_HrpA ATP-de 99.8 1.2E-20 2.5E-25 176.4 12.1 193 1-201 185-408 (1283)
65 PRK09200 preprotein translocas 99.8 2.5E-20 5.4E-25 167.7 13.7 123 75-199 411-543 (790)
66 PRK05298 excinuclease ABC subu 99.8 1.1E-19 2.4E-24 163.0 15.9 143 77-220 431-589 (652)
67 TIGR00631 uvrb excinuclease AB 99.8 1.3E-19 2.8E-24 161.9 15.7 131 77-208 427-564 (655)
68 KOG0352|consensus 99.8 2.6E-20 5.5E-25 153.5 10.2 179 26-205 177-370 (641)
69 COG1201 Lhr Lhr-like helicases 99.8 2.6E-19 5.6E-24 160.7 16.1 187 2-196 156-361 (814)
70 TIGR03714 secA2 accessory Sec 99.8 1.7E-19 3.7E-24 161.1 13.9 122 75-199 407-539 (762)
71 PRK13766 Hef nuclease; Provisi 99.8 4E-19 8.6E-24 163.4 16.4 124 74-198 345-480 (773)
72 TIGR00963 secA preprotein tran 99.8 5E-19 1.1E-23 157.4 14.0 124 74-199 387-519 (745)
73 PRK12906 secA preprotein trans 99.8 8E-19 1.7E-23 157.3 12.8 123 75-199 423-555 (796)
74 KOG0329|consensus 99.8 6.1E-20 1.3E-24 142.3 3.7 158 23-219 215-378 (387)
75 TIGR03158 cas3_cyano CRISPR-as 99.8 2.3E-18 4.9E-23 144.9 12.3 146 25-182 181-357 (357)
76 PRK09401 reverse gyrase; Revie 99.8 1.2E-18 2.6E-23 163.9 11.1 148 25-182 268-429 (1176)
77 PRK14701 reverse gyrase; Provi 99.8 1.2E-18 2.7E-23 167.2 10.4 167 28-203 272-462 (1638)
78 TIGR00603 rad25 DNA repair hel 99.8 1.1E-17 2.5E-22 149.3 14.7 129 76-209 480-621 (732)
79 PHA02558 uvsW UvsW helicase; P 99.8 8.2E-18 1.8E-22 147.4 13.4 117 77-193 329-449 (501)
80 smart00490 HELICc helicase sup 99.8 6E-18 1.3E-22 112.1 9.2 81 105-185 2-82 (82)
81 COG1200 RecG RecG-like helicas 99.8 2.3E-17 4.9E-22 143.8 15.2 185 27-219 413-613 (677)
82 PRK12900 secA preprotein trans 99.8 7.1E-18 1.5E-22 152.6 12.0 124 74-199 580-713 (1025)
83 KOG0354|consensus 99.8 1.6E-17 3.5E-22 146.5 13.7 124 74-199 393-531 (746)
84 COG1197 Mfd Transcription-repa 99.7 6E-17 1.3E-21 148.2 16.7 166 25-197 742-913 (1139)
85 KOG0353|consensus 99.7 2E-17 4.3E-22 135.0 11.7 170 27-199 252-469 (695)
86 PRK09694 helicase Cas3; Provis 99.7 2.2E-16 4.8E-21 144.5 13.9 104 80-186 549-664 (878)
87 COG0556 UvrB Helicase subunit 99.7 2.8E-16 6E-21 133.0 13.3 188 14-210 369-570 (663)
88 PLN03142 Probable chromatin-re 99.7 2.8E-16 6.2E-21 145.3 13.7 123 75-197 470-599 (1033)
89 KOG0349|consensus 99.7 8.9E-17 1.9E-21 133.0 8.8 136 85-220 500-670 (725)
90 TIGR01054 rgy reverse gyrase. 99.7 2.5E-16 5.4E-21 148.5 11.7 133 27-169 268-409 (1171)
91 COG1204 Superfamily II helicas 99.7 2.3E-16 4.9E-21 142.9 10.8 188 1-194 152-405 (766)
92 KOG0953|consensus 99.7 1.3E-15 2.7E-20 129.5 12.8 195 1-215 281-491 (700)
93 PRK12904 preprotein translocas 99.6 3.4E-15 7.4E-20 134.7 13.7 124 74-199 412-575 (830)
94 PRK13104 secA preprotein trans 99.6 2.8E-15 6E-20 135.6 12.9 124 74-199 426-589 (896)
95 TIGR00595 priA primosomal prot 99.6 6.9E-15 1.5E-19 128.6 14.1 97 103-199 271-383 (505)
96 PRK13107 preprotein translocas 99.6 8E-15 1.7E-19 132.4 14.1 123 75-199 432-593 (908)
97 COG4098 comFA Superfamily II D 99.6 2.4E-14 5.1E-19 115.6 14.5 182 24-207 232-426 (441)
98 COG1205 Distinct helicase fami 99.6 6.8E-15 1.5E-19 135.0 12.0 183 24-210 231-437 (851)
99 PRK05580 primosome assembly pr 99.6 3.6E-14 7.8E-19 128.3 14.3 102 102-203 438-555 (679)
100 COG1203 CRISPR-associated heli 99.6 1.1E-14 2.3E-19 132.7 9.4 191 1-197 344-550 (733)
101 KOG0950|consensus 99.6 3.7E-14 7.9E-19 127.0 12.2 125 90-217 460-628 (1008)
102 COG1061 SSL2 DNA or RNA helica 99.6 1E-13 2.2E-18 119.7 14.1 107 77-184 269-376 (442)
103 COG1643 HrpA HrpA-like helicas 99.5 3.3E-14 7.2E-19 129.0 11.2 169 26-200 196-390 (845)
104 KOG0951|consensus 99.5 2.7E-13 5.9E-18 124.1 13.5 122 83-204 539-709 (1674)
105 KOG0384|consensus 99.5 1.8E-13 4E-18 125.0 10.6 121 77-197 684-811 (1373)
106 KOG4150|consensus 99.5 2E-13 4.3E-18 116.8 8.4 145 77-221 510-666 (1034)
107 KOG0387|consensus 99.5 9.7E-13 2.1E-17 116.0 12.7 136 74-209 528-670 (923)
108 KOG0922|consensus 99.5 4.8E-13 1.1E-17 116.2 10.7 168 26-199 196-392 (674)
109 KOG0385|consensus 99.5 6.4E-13 1.4E-17 116.8 11.5 122 76-197 471-599 (971)
110 KOG0390|consensus 99.4 1.8E-12 4E-17 115.9 13.1 119 76-194 578-702 (776)
111 KOG0952|consensus 99.4 2.3E-12 5E-17 116.6 13.4 118 89-207 348-501 (1230)
112 PRK11448 hsdR type I restricti 99.4 3.1E-12 6.8E-17 120.4 14.2 96 89-186 697-802 (1123)
113 KOG0923|consensus 99.4 4E-12 8.7E-17 110.3 9.7 164 28-197 413-606 (902)
114 KOG0947|consensus 99.4 6.4E-12 1.4E-16 112.8 11.2 119 79-197 556-723 (1248)
115 PRK12903 secA preprotein trans 99.3 2.1E-11 4.5E-16 109.9 11.7 123 75-199 409-541 (925)
116 PRK12326 preprotein translocas 99.3 2.8E-11 6E-16 107.6 11.9 123 75-199 410-549 (764)
117 KOG0392|consensus 99.3 4.1E-11 8.8E-16 110.0 12.3 123 75-197 1309-1454(1549)
118 KOG0948|consensus 99.3 6.4E-12 1.4E-16 110.4 6.3 109 89-197 382-539 (1041)
119 KOG0389|consensus 99.2 9.1E-11 2E-15 103.7 12.1 124 75-198 760-889 (941)
120 KOG0391|consensus 99.2 1.7E-10 3.6E-15 105.6 12.7 123 75-197 1259-1387(1958)
121 PRK12901 secA preprotein trans 99.2 1.5E-10 3.2E-15 106.0 10.9 123 75-199 611-743 (1112)
122 KOG0924|consensus 99.2 6.8E-11 1.5E-15 103.2 8.2 164 28-197 503-697 (1042)
123 PRK13103 secA preprotein trans 99.2 1.9E-10 4E-15 104.6 10.5 123 75-199 432-593 (913)
124 KOG0388|consensus 99.1 1.9E-10 4.1E-15 100.9 9.2 124 74-197 1026-1154(1185)
125 PRK12899 secA preprotein trans 99.1 5.4E-10 1.2E-14 101.9 12.0 123 75-199 551-683 (970)
126 COG4581 Superfamily II RNA hel 99.1 6.5E-10 1.4E-14 102.5 10.8 108 89-196 378-536 (1041)
127 KOG1123|consensus 99.1 2.3E-09 5E-14 91.0 13.0 134 68-207 520-663 (776)
128 COG0553 HepA Superfamily II DN 99.0 4.5E-09 9.8E-14 98.1 13.9 122 76-197 692-822 (866)
129 KOG0926|consensus 99.0 2E-09 4.3E-14 95.7 8.0 80 117-197 607-704 (1172)
130 TIGR01407 dinG_rel DnaQ family 99.0 2E-08 4.3E-13 93.6 15.0 120 89-209 673-828 (850)
131 KOG1000|consensus 98.9 4.7E-09 1E-13 89.0 8.3 121 77-197 473-603 (689)
132 CHL00122 secA preprotein trans 98.9 1.8E-08 4E-13 91.5 12.4 81 74-156 406-490 (870)
133 KOG0920|consensus 98.9 4.8E-09 1E-13 95.9 7.0 108 89-197 412-544 (924)
134 KOG1002|consensus 98.9 1.7E-08 3.6E-13 85.8 9.6 121 77-197 621-749 (791)
135 KOG0386|consensus 98.8 1.9E-08 4.2E-13 91.3 9.8 121 75-195 709-834 (1157)
136 KOG1015|consensus 98.8 3.3E-08 7.1E-13 89.5 9.7 123 74-196 1124-1274(1567)
137 PF13307 Helicase_C_2: Helicas 98.8 3.5E-08 7.5E-13 74.4 8.2 112 83-197 3-150 (167)
138 COG1110 Reverse gyrase [DNA re 98.8 4.6E-08 1E-12 89.3 9.8 133 25-168 276-416 (1187)
139 KOG0949|consensus 98.7 5E-08 1.1E-12 88.6 8.4 81 116-196 964-1047(1330)
140 PRK12902 secA preprotein trans 98.7 1.4E-07 3.1E-12 85.9 11.4 82 74-157 421-506 (939)
141 PRK08074 bifunctional ATP-depe 98.7 1.7E-07 3.7E-12 88.1 12.3 121 89-209 751-907 (928)
142 PF06862 DUF1253: Protein of u 98.7 1.6E-06 3.6E-11 74.2 16.8 180 23-205 213-423 (442)
143 COG1199 DinG Rad3-related DNA 98.7 3.9E-07 8.5E-12 82.9 13.5 105 89-196 478-616 (654)
144 COG4096 HsdR Type I site-speci 98.6 2.5E-07 5.5E-12 83.1 9.9 94 90-185 426-526 (875)
145 KOG4439|consensus 98.6 4.1E-07 9E-12 80.2 10.3 121 73-193 726-852 (901)
146 PRK11747 dinG ATP-dependent DN 98.6 1.1E-06 2.5E-11 80.2 13.0 105 89-197 533-674 (697)
147 TIGR00348 hsdR type I site-spe 98.5 2.5E-06 5.3E-11 77.7 13.6 94 90-184 514-634 (667)
148 KOG0925|consensus 98.5 8.3E-07 1.8E-11 75.6 9.7 161 25-197 191-387 (699)
149 COG1198 PriA Primosomal protei 98.4 1.7E-06 3.7E-11 78.3 10.6 105 103-207 493-613 (730)
150 PRK07246 bifunctional ATP-depe 98.4 7.7E-06 1.7E-10 76.0 14.3 119 89-210 646-798 (820)
151 COG0653 SecA Preprotein transl 98.4 4.7E-07 1E-11 82.1 6.0 124 73-198 410-546 (822)
152 TIGR00604 rad3 DNA repair heli 98.3 1.3E-05 2.9E-10 73.5 12.9 107 89-196 521-673 (705)
153 smart00492 HELICc3 helicase su 98.0 7.6E-05 1.7E-09 54.6 9.7 51 119-169 26-79 (141)
154 smart00491 HELICc2 helicase su 98.0 5.8E-05 1.3E-09 55.3 8.6 92 103-194 4-136 (142)
155 TIGR03117 cas_csf4 CRISPR-asso 98.0 0.0001 2.2E-09 66.3 11.6 97 89-187 469-604 (636)
156 TIGR00596 rad1 DNA repair prot 97.8 0.00016 3.5E-09 66.9 10.2 39 74-112 268-317 (814)
157 COG4889 Predicted helicase [Ge 97.8 3.1E-05 6.8E-10 70.5 4.5 95 91-185 461-573 (1518)
158 KOG1016|consensus 97.7 0.00014 3.1E-09 65.5 8.3 124 77-200 704-850 (1387)
159 TIGR02562 cas3_yersinia CRISPR 97.7 0.00017 3.6E-09 67.5 8.9 91 93-186 759-881 (1110)
160 KOG1001|consensus 97.6 1E-05 2.2E-10 73.1 -0.9 119 74-192 520-643 (674)
161 PF13871 Helicase_C_4: Helicas 97.5 0.00043 9.4E-09 56.0 7.4 78 131-208 52-141 (278)
162 PRK05580 primosome assembly pr 97.1 0.0074 1.6E-07 55.4 11.7 98 68-166 166-266 (679)
163 KOG0951|consensus 97.1 0.0039 8.4E-08 59.3 9.3 113 89-205 1358-1502(1674)
164 PRK10917 ATP-dependent DNA hel 97.0 0.0077 1.7E-07 55.4 11.2 99 67-165 285-390 (681)
165 TIGR00595 priA primosomal prot 96.9 0.0091 2E-07 52.9 10.0 91 75-166 8-101 (505)
166 PF02399 Herpes_ori_bp: Origin 96.8 0.011 2.3E-07 54.4 9.6 112 78-196 269-387 (824)
167 PRK14873 primosome assembly pr 96.7 0.0097 2.1E-07 54.3 8.6 90 76-166 172-265 (665)
168 TIGR00643 recG ATP-dependent D 96.6 0.021 4.6E-07 52.1 10.4 98 67-164 259-363 (630)
169 COG1198 PriA Primosomal protei 96.6 0.0086 1.9E-07 54.9 7.5 81 68-148 221-304 (730)
170 COG1110 Reverse gyrase [DNA re 96.5 0.01 2.2E-07 55.6 7.7 83 67-149 100-190 (1187)
171 KOG2340|consensus 96.5 0.032 6.9E-07 48.8 10.0 179 26-204 470-675 (698)
172 TIGR00580 mfd transcription-re 96.3 0.039 8.4E-07 52.4 10.6 98 67-164 475-579 (926)
173 PF10593 Z1: Z1 domain; Inter 96.2 0.03 6.6E-07 44.6 8.1 88 114-206 110-202 (239)
174 PRK14873 primosome assembly pr 96.2 0.052 1.1E-06 49.7 10.1 60 131-196 463-538 (665)
175 PRK14701 reverse gyrase; Provi 95.7 0.098 2.1E-06 52.5 10.6 83 67-149 97-187 (1638)
176 PRK10689 transcription-repair 95.7 0.12 2.5E-06 50.4 10.8 98 67-164 624-728 (1147)
177 KOG0921|consensus 95.3 0.024 5.1E-07 52.5 4.4 107 90-197 643-774 (1282)
178 COG0513 SrmB Superfamily II DN 95.3 0.13 2.9E-06 45.7 9.1 68 93-164 102-180 (513)
179 COG1200 RecG RecG-like helicas 95.2 0.16 3.4E-06 46.0 9.2 76 89-164 310-390 (677)
180 TIGR01054 rgy reverse gyrase. 95.0 0.13 2.8E-06 50.2 8.6 83 67-149 96-187 (1171)
181 KOG0701|consensus 94.9 0.019 4.2E-07 56.5 2.8 97 89-185 291-399 (1606)
182 KOG1133|consensus 94.7 1.4 3.1E-05 40.2 13.5 118 77-197 613-780 (821)
183 KOG0298|consensus 94.7 0.072 1.6E-06 51.1 5.9 109 77-189 1204-1316(1394)
184 TIGR01389 recQ ATP-dependent D 94.6 1.2 2.7E-05 40.4 13.6 81 67-149 31-112 (591)
185 TIGR00614 recQ_fam ATP-depende 94.1 0.26 5.6E-06 43.4 7.8 81 67-149 29-110 (470)
186 cd00268 DEADc DEAD-box helicas 94.0 2.1 4.5E-05 32.7 13.1 74 89-166 68-151 (203)
187 KOG0347|consensus 93.7 0.19 4.2E-06 44.4 6.1 52 93-148 266-321 (731)
188 COG1197 Mfd Transcription-repa 93.5 0.55 1.2E-05 45.2 9.1 88 76-163 627-721 (1139)
189 PRK11776 ATP-dependent RNA hel 93.4 0.56 1.2E-05 41.1 8.8 96 67-166 44-155 (460)
190 KOG0338|consensus 93.3 0.78 1.7E-05 40.4 9.1 82 89-174 251-343 (691)
191 KOG0331|consensus 93.2 1.3 2.9E-05 39.2 10.5 71 90-164 165-245 (519)
192 PRK11634 ATP-dependent RNA hel 93.1 0.75 1.6E-05 42.1 9.3 94 67-164 46-155 (629)
193 COG1111 MPH1 ERCC4-like helica 92.9 1.6 3.5E-05 38.3 10.3 141 67-213 32-190 (542)
194 COG0514 RecQ Superfamily II DN 91.8 1.9 4.2E-05 38.9 9.8 147 65-214 33-193 (590)
195 PRK11192 ATP-dependent RNA hel 91.5 1.1 2.4E-05 38.9 8.1 73 90-166 73-155 (434)
196 KOG0339|consensus 91.4 5.2 0.00011 35.5 11.7 70 91-164 297-376 (731)
197 KOG1513|consensus 91.3 0.47 1E-05 43.9 5.5 64 133-196 850-923 (1300)
198 KOG0383|consensus 91.0 0.15 3.3E-06 46.6 2.2 77 76-153 615-696 (696)
199 KOG0330|consensus 91.0 1.8 3.9E-05 36.9 8.3 82 78-163 117-209 (476)
200 PRK09401 reverse gyrase; Revie 90.9 1.6 3.4E-05 43.0 9.1 82 67-148 98-187 (1176)
201 PRK11057 ATP-dependent DNA hel 90.6 1.4 3E-05 40.2 8.1 81 67-149 43-124 (607)
202 PLN03137 ATP-dependent DNA hel 90.1 1.6 3.4E-05 42.5 8.1 60 90-149 500-561 (1195)
203 PRK04837 ATP-dependent RNA hel 89.9 1.9 4.1E-05 37.3 8.1 73 90-166 83-165 (423)
204 PRK01297 ATP-dependent RNA hel 89.6 3.7 8.1E-05 36.2 9.8 72 90-164 162-243 (475)
205 PRK10590 ATP-dependent RNA hel 89.2 2.3 5E-05 37.3 8.1 70 92-165 77-156 (456)
206 KOG0350|consensus 88.7 2.4 5.1E-05 37.4 7.5 80 89-168 214-305 (620)
207 cd01524 RHOD_Pyr_redox Member 88.3 1 2.2E-05 29.7 4.2 37 89-125 50-86 (90)
208 PRK04537 ATP-dependent RNA hel 88.3 1.9 4E-05 39.1 7.1 70 91-164 85-165 (572)
209 PF00270 DEAD: DEAD/DEAH box h 88.0 8.5 0.00019 28.1 12.6 94 67-164 17-125 (169)
210 smart00450 RHOD Rhodanese Homo 86.7 2.2 4.7E-05 28.0 5.2 37 89-125 55-92 (100)
211 cd01523 RHOD_Lact_B Member of 86.6 1.1 2.5E-05 30.0 3.8 37 89-125 60-96 (100)
212 PRK13766 Hef nuclease; Provisi 86.4 7.9 0.00017 36.4 10.3 96 67-168 32-141 (773)
213 KOG0329|consensus 86.2 2.5 5.4E-05 34.1 5.8 71 90-164 110-191 (387)
214 TIGR00963 secA preprotein tran 84.6 6 0.00013 36.9 8.3 59 85-149 92-154 (745)
215 PTZ00110 helicase; Provisional 84.6 13 0.00029 33.4 10.5 73 90-166 203-285 (545)
216 cd01529 4RHOD_Repeats Member o 84.1 2.6 5.6E-05 28.0 4.6 37 89-125 55-92 (96)
217 TIGR03817 DECH_helic helicase/ 83.8 5.1 0.00011 37.5 7.7 94 67-165 54-164 (742)
218 PRK09751 putative ATP-dependen 83.7 6.2 0.00013 39.8 8.5 72 90-165 37-131 (1490)
219 cd00046 DEXDc DEAD-like helica 83.5 12 0.00026 25.7 8.3 57 89-149 29-88 (144)
220 KOG0389|consensus 80.7 14 0.00029 34.7 8.8 72 79-153 437-512 (941)
221 cd01518 RHOD_YceA Member of th 80.4 4.5 9.8E-05 27.1 4.7 37 89-125 60-97 (101)
222 PF04364 DNA_pol3_chi: DNA pol 80.3 11 0.00024 27.2 6.9 81 78-169 15-97 (137)
223 cd01534 4RHOD_Repeat_3 Member 80.1 3.4 7.3E-05 27.4 3.9 37 89-125 55-91 (95)
224 PF11496 HDA2-3: Class II hist 80.0 23 0.0005 29.3 9.4 123 75-197 95-245 (297)
225 PRK13104 secA preprotein trans 79.8 9.8 0.00021 36.3 7.9 57 87-149 120-180 (896)
226 PRK12898 secA preprotein trans 79.4 10 0.00022 35.0 7.7 56 87-148 141-200 (656)
227 KOG0343|consensus 78.9 9.4 0.0002 34.3 7.0 55 89-148 140-198 (758)
228 KOG0340|consensus 78.8 8.6 0.00019 32.6 6.5 56 89-148 74-133 (442)
229 cd01521 RHOD_PspE2 Member of t 78.1 4.4 9.5E-05 27.8 4.1 37 89-125 63-101 (110)
230 cd01526 RHOD_ThiF Member of th 78.0 2.9 6.2E-05 29.3 3.2 37 89-125 71-109 (122)
231 cd00158 RHOD Rhodanese Homolog 77.7 5.5 0.00012 25.5 4.4 37 89-125 49-86 (89)
232 cd01527 RHOD_YgaP Member of th 77.5 4.6 0.0001 26.9 4.0 36 89-124 53-89 (99)
233 PRK15483 type III restriction- 77.4 2.5 5.5E-05 40.4 3.4 72 140-211 501-582 (986)
234 COG1168 MalY Bifunctional PLP- 77.3 9.9 0.00021 32.4 6.5 112 77-189 146-270 (388)
235 COG0610 Type I site-specific r 77.2 14 0.00029 35.9 8.3 56 129-185 580-637 (962)
236 cd01528 RHOD_2 Member of the R 77.2 4.2 9.2E-05 27.3 3.8 38 89-126 57-95 (101)
237 TIGR00696 wecB_tagA_cpsF bacte 76.4 28 0.0006 26.4 8.3 55 91-145 49-105 (177)
238 COG3587 Restriction endonuclea 75.8 6.7 0.00015 36.9 5.5 71 139-209 482-565 (985)
239 cd01533 4RHOD_Repeat_2 Member 75.8 9.9 0.00022 25.8 5.4 37 89-125 65-103 (109)
240 PLN00206 DEAD-box ATP-dependen 74.9 16 0.00035 32.7 7.8 71 90-164 196-276 (518)
241 cd01449 TST_Repeat_2 Thiosulfa 74.2 11 0.00023 25.9 5.3 36 89-124 77-113 (118)
242 PRK02362 ski2-like helicase; P 74.1 11 0.00025 35.2 6.8 91 67-164 42-143 (737)
243 cd01519 RHOD_HSP67B2 Member of 74.1 5.1 0.00011 26.9 3.6 37 89-125 65-102 (106)
244 cd01532 4RHOD_Repeat_1 Member 74.1 7.2 0.00016 25.7 4.2 36 90-125 50-88 (92)
245 PF01751 Toprim: Toprim domain 73.9 4.1 8.9E-05 27.5 3.0 64 93-156 1-76 (100)
246 KOG0335|consensus 73.6 42 0.00091 29.7 9.5 71 91-165 153-233 (482)
247 KOG0334|consensus 73.4 13 0.00027 35.7 6.7 55 90-148 438-496 (997)
248 cd01535 4RHOD_Repeat_4 Member 73.4 12 0.00025 27.3 5.5 36 89-124 48-84 (145)
249 cd01444 GlpE_ST GlpE sulfurtra 73.3 6.7 0.00015 25.8 3.9 36 89-124 55-91 (96)
250 PF03808 Glyco_tran_WecB: Glyc 72.9 36 0.00078 25.5 8.2 57 90-146 48-107 (172)
251 PRK05320 rhodanese superfamily 72.7 8.6 0.00019 31.0 5.0 39 88-126 173-212 (257)
252 smart00115 CASc Caspase, inter 72.7 46 0.001 26.5 10.3 84 89-178 7-106 (241)
253 cd01447 Polysulfide_ST Polysul 72.2 4.4 9.6E-05 27.0 2.9 37 89-125 60-97 (103)
254 PRK09200 preprotein translocas 71.5 18 0.00039 34.2 7.3 75 68-148 95-176 (790)
255 KOG0342|consensus 71.3 24 0.00051 31.3 7.4 56 89-148 153-213 (543)
256 cd01520 RHOD_YbbB Member of th 71.2 7.4 0.00016 27.5 3.9 38 89-126 85-123 (128)
257 cd01525 RHOD_Kc Member of the 71.0 6.9 0.00015 26.3 3.6 36 90-125 65-101 (105)
258 cd06533 Glyco_transf_WecG_TagA 70.5 42 0.00091 25.1 8.1 56 90-145 46-104 (171)
259 COG4098 comFA Superfamily II D 70.4 62 0.0013 27.6 9.4 95 77-184 129-231 (441)
260 PTZ00424 helicase 45; Provisio 70.0 51 0.0011 28.1 9.5 95 68-166 69-178 (401)
261 cd00032 CASc Caspase, interleu 69.4 55 0.0012 26.0 11.4 85 89-179 8-108 (243)
262 KOG0345|consensus 69.4 31 0.00067 30.5 7.7 69 92-163 81-162 (567)
263 PRK12899 secA preprotein trans 69.2 23 0.0005 34.0 7.5 74 70-149 113-192 (970)
264 PRK13767 ATP-dependent helicas 68.9 16 0.00035 35.0 6.6 70 91-164 85-178 (876)
265 cd01448 TST_Repeat_1 Thiosulfa 68.6 14 0.00031 25.5 4.9 37 89-125 78-116 (122)
266 KOG0352|consensus 68.3 18 0.00039 31.6 6.1 86 63-149 35-122 (641)
267 PRK13103 secA preprotein trans 67.9 29 0.00062 33.3 7.8 63 82-150 115-181 (913)
268 PRK00254 ski2-like helicase; P 66.8 29 0.00063 32.5 7.8 92 66-164 41-144 (720)
269 TIGR00631 uvrb excinuclease AB 65.7 84 0.0018 29.2 10.3 104 75-179 40-174 (655)
270 PRK12904 preprotein translocas 65.5 33 0.00071 32.6 7.7 59 85-149 117-179 (830)
271 PRK10287 thiosulfate:cyanide s 65.0 28 0.0006 23.8 5.6 36 90-125 60-95 (104)
272 smart00487 DEXDc DEAD-like hel 64.4 54 0.0012 24.0 10.0 78 67-148 27-113 (201)
273 cd03028 GRX_PICOT_like Glutare 64.0 38 0.00083 22.2 7.3 45 89-133 6-56 (90)
274 KOG0346|consensus 63.8 19 0.0004 31.6 5.3 62 90-155 93-165 (569)
275 KOG0337|consensus 63.7 40 0.00088 29.4 7.3 73 89-165 89-171 (529)
276 PRK05728 DNA polymerase III su 63.3 18 0.00039 26.3 4.6 80 75-167 12-94 (142)
277 PLN02160 thiosulfate sulfurtra 61.9 15 0.00032 26.4 4.0 37 89-125 80-117 (136)
278 PF01113 DapB_N: Dihydrodipico 61.5 54 0.0012 23.0 6.9 55 92-148 69-123 (124)
279 cd01522 RHOD_1 Member of the R 61.4 15 0.00032 25.5 3.8 38 89-126 63-101 (117)
280 COG2519 GCD14 tRNA(1-methylade 60.5 30 0.00065 27.9 5.7 39 77-115 174-213 (256)
281 TIGR02981 phageshock_pspE phag 60.4 21 0.00045 24.2 4.3 36 89-124 57-92 (101)
282 COG1204 Superfamily II helicas 60.4 49 0.0011 31.3 8.0 77 65-148 48-130 (766)
283 COG1205 Distinct helicase fami 60.4 35 0.00077 32.7 7.1 147 65-215 86-259 (851)
284 PF14617 CMS1: U3-containing 9 59.6 30 0.00065 27.9 5.7 86 91-179 127-234 (252)
285 cd01445 TST_Repeats Thiosulfat 58.8 28 0.00061 25.0 5.0 46 80-125 82-134 (138)
286 KOG0351|consensus 57.3 32 0.00069 33.3 6.2 59 90-148 304-364 (941)
287 PRK00162 glpE thiosulfate sulf 57.0 32 0.0007 23.2 4.9 37 89-125 57-94 (108)
288 PRK01415 hypothetical protein; 56.4 24 0.00053 28.3 4.6 38 89-126 170-208 (247)
289 PRK00142 putative rhodanese-re 56.4 25 0.00055 29.3 4.9 39 88-126 169-208 (314)
290 TIGR00096 probable S-adenosylm 55.8 1.1E+02 0.0025 25.0 10.2 67 92-160 26-92 (276)
291 PRK11493 sseA 3-mercaptopyruva 55.4 27 0.00059 28.4 5.0 47 79-125 217-267 (281)
292 PRK01172 ski2-like helicase; P 54.9 60 0.0013 30.1 7.6 91 67-164 40-141 (674)
293 PF02142 MGS: MGS-like domain 54.8 9.4 0.0002 25.5 1.8 42 108-149 24-69 (95)
294 TIGR00365 monothiol glutaredox 54.7 62 0.0013 21.6 8.5 44 90-133 11-60 (97)
295 PRK06646 DNA polymerase III su 54.1 42 0.0009 24.9 5.3 80 75-167 12-93 (154)
296 PHA03371 circ protein; Provisi 54.0 11 0.00025 29.5 2.3 48 149-196 29-90 (240)
297 PF00581 Rhodanese: Rhodanese- 53.3 22 0.00048 23.7 3.6 37 89-125 66-108 (113)
298 KOG0385|consensus 52.9 1.1E+02 0.0025 29.0 8.6 57 89-148 216-275 (971)
299 KOG1132|consensus 52.9 2.2E+02 0.0048 27.5 11.3 79 90-169 561-656 (945)
300 PLN02723 3-mercaptopyruvate su 52.8 33 0.00071 28.6 5.1 47 79-125 255-305 (320)
301 PRK05298 excinuclease ABC subu 52.7 1.6E+02 0.0034 27.4 9.8 105 75-180 43-178 (652)
302 cd03031 GRX_GRX_like Glutaredo 52.6 90 0.002 22.9 7.3 46 92-137 1-53 (147)
303 cd01530 Cdc25 Cdc25 phosphatas 52.0 22 0.00048 24.9 3.4 37 89-125 67-117 (121)
304 smart00851 MGS MGS-like domain 51.8 26 0.00056 23.0 3.6 42 107-149 23-64 (90)
305 TIGR03865 PQQ_CXXCW PQQ-depend 51.2 49 0.0011 24.6 5.3 36 89-124 115-152 (162)
306 smart00493 TOPRIM topoisomeras 50.5 59 0.0013 20.1 6.2 59 93-153 2-60 (76)
307 PRK11784 tRNA 2-selenouridine 49.8 91 0.002 26.4 7.3 48 89-137 87-135 (345)
308 COG0353 RecR Recombinational D 49.7 91 0.002 24.1 6.5 64 89-153 77-149 (198)
309 TIGR03714 secA2 accessory Sec 49.4 74 0.0016 30.1 7.1 58 86-149 107-173 (762)
310 COG0607 PspE Rhodanese-related 49.4 20 0.00043 24.0 2.8 36 89-124 60-96 (110)
311 PF07013 DUF1314: Protein of u 49.0 25 0.00053 26.3 3.3 48 149-196 8-67 (177)
312 KOG1180|consensus 48.8 1.3E+02 0.0029 27.4 8.2 75 90-167 115-194 (678)
313 cd01446 DSP_MapKP N-terminal r 48.7 51 0.0011 23.1 5.0 37 89-125 74-122 (132)
314 PF13245 AAA_19: Part of AAA d 48.3 45 0.00097 21.3 4.2 36 75-110 21-62 (76)
315 cd03418 GRX_GRXb_1_3_like Glut 48.3 63 0.0014 19.8 7.3 45 93-137 2-47 (75)
316 cd03027 GRX_DEP Glutaredoxin ( 46.9 68 0.0015 19.8 7.3 54 92-145 2-56 (73)
317 PF08704 GCD14: tRNA methyltra 46.3 52 0.0011 26.4 5.1 53 63-116 113-165 (247)
318 PF12683 DUF3798: Protein of u 46.1 57 0.0012 26.6 5.2 90 77-172 47-144 (275)
319 COG0300 DltE Short-chain dehyd 46.1 1.5E+02 0.0032 24.2 7.6 68 79-147 20-91 (265)
320 PRK03692 putative UDP-N-acetyl 45.1 1.6E+02 0.0035 23.6 8.4 56 90-145 105-162 (243)
321 PF02617 ClpS: ATP-dependent C 44.9 46 0.00099 21.5 3.9 48 67-114 8-71 (82)
322 PF02602 HEM4: Uroporphyrinoge 44.5 64 0.0014 25.0 5.4 70 77-148 103-176 (231)
323 COG0074 SucD Succinyl-CoA synt 44.4 1.8E+02 0.0039 24.0 8.6 66 77-142 53-118 (293)
324 TIGR03167 tRNA_sel_U_synt tRNA 44.3 1.7E+02 0.0038 24.3 8.0 45 92-137 76-121 (311)
325 COG2217 ZntA Cation transport 43.0 1.7E+02 0.0037 27.5 8.5 58 83-145 547-604 (713)
326 PF04273 DUF442: Putative phos 42.4 71 0.0015 22.1 4.7 32 77-109 74-105 (110)
327 PF07652 Flavi_DEAD: Flaviviru 42.2 33 0.00071 25.2 3.0 36 79-114 20-57 (148)
328 COG2247 LytB Putative cell wal 42.1 1.6E+02 0.0034 24.8 7.2 52 86-137 72-123 (337)
329 KOG0348|consensus 41.0 58 0.0013 29.4 4.8 71 90-164 211-293 (708)
330 PRK08972 fliI flagellum-specif 40.6 2.4E+02 0.0052 24.9 8.5 25 73-98 171-195 (444)
331 COG0052 RpsB Ribosomal protein 40.2 97 0.0021 24.9 5.6 45 68-112 40-85 (252)
332 PRK05600 thiamine biosynthesis 39.7 64 0.0014 27.6 4.9 37 89-125 331-369 (370)
333 PRK10329 glutaredoxin-like pro 39.6 1E+02 0.0022 19.8 7.5 56 92-148 2-58 (81)
334 PRK09860 putative alcohol dehy 39.5 2.5E+02 0.0053 24.1 8.6 37 99-135 73-109 (383)
335 TIGR02621 cas3_GSU0051 CRISPR- 39.3 68 0.0015 30.7 5.4 55 90-148 61-143 (844)
336 TIGR00036 dapB dihydrodipicoli 39.2 2.1E+02 0.0045 23.1 7.9 57 91-148 70-126 (266)
337 PRK05597 molybdopterin biosynt 38.4 52 0.0011 27.9 4.2 37 89-125 313-350 (355)
338 cd01080 NAD_bind_m-THF_DH_Cycl 38.4 1.7E+02 0.0037 21.9 8.5 78 87-172 41-122 (168)
339 PF11823 DUF3343: Protein of u 38.3 96 0.0021 19.4 4.5 26 92-117 3-28 (73)
340 PRK12326 preprotein translocas 37.8 1.4E+02 0.003 28.2 7.0 53 82-134 111-167 (764)
341 PRK15327 type III secretion sy 37.8 2.7E+02 0.0059 24.1 9.7 67 70-139 164-241 (393)
342 PRK07594 type III secretion sy 36.8 3E+02 0.0064 24.3 9.3 27 171-198 285-312 (433)
343 PF03853 YjeF_N: YjeF-related 36.0 1.8E+02 0.0039 21.6 7.3 77 88-164 23-105 (169)
344 COG0289 DapB Dihydrodipicolina 35.7 2.4E+02 0.0053 23.0 7.4 56 91-148 70-125 (266)
345 TIGR01040 V-ATPase_V1_B V-type 35.6 3.1E+02 0.0067 24.4 8.5 52 79-130 198-262 (466)
346 COG0365 Acs Acyl-coenzyme A sy 34.9 3.5E+02 0.0075 24.5 9.0 65 89-156 64-128 (528)
347 COG2927 HolC DNA polymerase II 34.3 1.5E+02 0.0032 21.7 5.4 76 80-166 17-94 (144)
348 PRK09189 uroporphyrinogen-III 34.3 1.4E+02 0.003 23.4 5.9 65 77-142 103-172 (240)
349 PRK12906 secA preprotein trans 33.7 1.6E+02 0.0034 28.2 6.7 54 80-133 111-168 (796)
350 COG1201 Lhr Lhr-like helicases 33.5 1.5E+02 0.0033 28.3 6.6 69 92-164 75-155 (814)
351 PRK11664 ATP-dependent RNA hel 33.4 3.9E+02 0.0085 25.7 9.4 92 67-168 23-126 (812)
352 PHA02558 uvsW UvsW helicase; P 33.1 1.4E+02 0.0031 26.5 6.3 85 68-163 133-227 (501)
353 COG1609 PurR Transcriptional r 32.9 2.9E+02 0.0063 23.0 10.2 115 51-166 137-273 (333)
354 PRK09280 F0F1 ATP synthase sub 32.7 2.8E+02 0.0061 24.6 7.8 58 74-131 154-220 (463)
355 KOG1255|consensus 32.3 2.7E+02 0.0059 22.5 8.1 62 78-139 84-145 (329)
356 cd01443 Cdc25_Acr2p Cdc25 enzy 32.3 1.6E+02 0.0035 19.9 5.7 36 89-124 65-108 (113)
357 KOG0341|consensus 32.0 91 0.002 27.1 4.5 55 90-148 246-310 (610)
358 KOG1257|consensus 31.2 1.4E+02 0.0029 27.0 5.5 99 93-194 368-475 (582)
359 PRK11493 sseA 3-mercaptopyruva 31.1 85 0.0018 25.5 4.2 47 79-125 73-124 (281)
360 PRK08762 molybdopterin biosynt 30.9 76 0.0017 27.1 4.1 36 89-124 56-92 (376)
361 PRK06936 type III secretion sy 30.7 3.8E+02 0.0082 23.7 9.6 75 73-148 171-259 (439)
362 PLN02723 3-mercaptopyruvate su 30.6 97 0.0021 25.8 4.6 47 79-125 89-140 (320)
363 cd01423 MGS_CPS_I_III Methylgl 30.2 80 0.0017 21.7 3.4 48 99-150 32-81 (116)
364 cd01422 MGS Methylglyoxal synt 30.1 92 0.002 21.6 3.7 47 98-149 32-79 (115)
365 cd01132 F1_ATPase_alpha F1 ATP 30.1 3.1E+02 0.0067 22.5 8.5 74 75-148 80-169 (274)
366 PRK10310 PTS system galactitol 30.0 1.7E+02 0.0037 19.4 7.9 62 92-160 4-71 (94)
367 cd02017 TPP_E1_EcPDC_like Thia 29.9 3.7E+02 0.008 23.3 9.4 63 123-185 289-354 (386)
368 PHA02653 RNA helicase NPH-II; 29.8 4.7E+02 0.01 24.5 9.7 71 90-166 222-299 (675)
369 TIGR01873 cas_CT1978 CRISPR-as 29.7 1.1E+02 0.0023 20.4 3.7 44 114-157 23-70 (87)
370 KOG0353|consensus 29.6 2.5E+02 0.0054 24.4 6.6 60 89-148 133-194 (695)
371 PRK08927 fliI flagellum-specif 29.3 4E+02 0.0087 23.5 9.5 76 72-148 166-255 (442)
372 PRK07878 molybdopterin biosynt 29.0 80 0.0017 27.2 3.9 37 89-125 342-379 (392)
373 COG1922 WecG Teichoic acid bio 28.9 3.1E+02 0.0068 22.2 8.6 55 92-146 109-167 (253)
374 KOG0384|consensus 28.9 1.8E+02 0.004 29.1 6.3 72 77-149 406-484 (1373)
375 PF10657 RC-P840_PscD: Photosy 28.4 1.1E+02 0.0023 21.7 3.6 37 130-166 64-106 (144)
376 KOG2638|consensus 27.9 21 0.00046 30.9 0.2 18 6-23 210-227 (498)
377 PRK07411 hypothetical protein; 27.7 88 0.0019 26.9 3.9 37 89-125 341-377 (390)
378 PF05221 AdoHcyase: S-adenosyl 27.6 1.8E+02 0.0039 23.7 5.4 62 75-136 53-114 (268)
379 PRK05752 uroporphyrinogen-III 27.4 1.9E+02 0.0042 22.9 5.7 58 91-148 130-190 (255)
380 KOG0336|consensus 27.4 3.3E+02 0.0071 24.1 7.0 71 89-163 293-372 (629)
381 PRK09281 F0F1 ATP synthase sub 27.3 4.6E+02 0.01 23.6 8.5 38 76-113 174-215 (502)
382 TIGR01481 ccpA catabolite cont 27.3 3.4E+02 0.0073 22.0 9.8 63 104-166 197-272 (329)
383 TIGR03498 FliI_clade3 flagella 27.1 4.3E+02 0.0093 23.1 9.1 77 72-148 148-237 (418)
384 PRK06827 phosphoribosylpyropho 27.1 2.4E+02 0.0053 24.3 6.4 62 88-150 262-329 (382)
385 PF01094 ANF_receptor: Recepto 26.7 2.4E+02 0.0051 22.9 6.3 53 65-117 96-152 (348)
386 COG1157 FliI Flagellar biosynt 26.3 4.5E+02 0.0098 23.1 8.5 39 103-141 241-279 (441)
387 KOG0333|consensus 26.2 1.8E+02 0.0039 26.4 5.4 55 89-148 321-380 (673)
388 COG1478 GTP and metal dependen 26.0 1.3E+02 0.0028 24.1 4.1 59 138-196 90-172 (257)
389 TIGR01970 DEAH_box_HrpB ATP-de 25.7 6.1E+02 0.013 24.5 9.5 91 68-168 21-123 (819)
390 PRK05922 type III secretion sy 25.5 4.7E+02 0.01 23.1 8.7 20 72-91 165-184 (434)
391 PF11019 DUF2608: Protein of u 25.3 3.6E+02 0.0077 21.7 6.8 51 68-119 155-207 (252)
392 PF09707 Cas_Cas2CT1978: CRISP 25.3 1.7E+02 0.0037 19.3 4.0 43 114-157 23-69 (86)
393 PF07517 SecA_DEAD: SecA DEAD- 25.1 3.8E+02 0.0082 21.8 7.6 66 68-133 94-165 (266)
394 PF00532 Peripla_BP_1: Peripla 25.1 3.7E+02 0.0079 21.6 8.6 108 51-159 79-210 (279)
395 PF10740 DUF2529: Protein of u 25.0 1.2E+02 0.0027 22.9 3.7 31 90-120 82-114 (172)
396 PF14417 MEDS: MEDS: MEthanoge 24.9 1.5E+02 0.0033 22.4 4.5 51 65-115 20-72 (191)
397 PF13380 CoA_binding_2: CoA bi 24.9 2.4E+02 0.0052 19.5 5.2 48 93-143 58-105 (116)
398 PRK04196 V-type ATP synthase s 24.8 5E+02 0.011 23.1 8.7 76 73-148 152-248 (460)
399 PRK09629 bifunctional thiosulf 24.8 1.4E+02 0.003 27.5 4.8 46 79-124 209-258 (610)
400 COG0169 AroE Shikimate 5-dehyd 24.6 4E+02 0.0086 21.9 9.1 25 90-114 150-174 (283)
401 PRK13107 preprotein translocas 24.6 4.7E+02 0.01 25.5 8.1 59 84-148 117-179 (908)
402 PRK07960 fliI flagellum-specif 24.5 5E+02 0.011 23.1 9.4 28 171-198 305-334 (455)
403 PTZ00237 acetyl-CoA synthetase 24.2 5.1E+02 0.011 23.8 8.5 69 77-148 101-172 (647)
404 PRK01189 V-type ATP synthase s 24.2 2E+02 0.0043 19.7 4.4 48 98-145 29-76 (104)
405 KOG0386|consensus 24.1 1.4E+02 0.003 29.2 4.6 59 90-149 444-502 (1157)
406 PRK05928 hemD uroporphyrinogen 24.1 2.7E+02 0.0058 21.5 5.9 40 77-117 110-151 (249)
407 cd05567 PTS_IIB_mannitol PTS_I 23.9 2.1E+02 0.0045 18.4 6.8 76 92-178 2-84 (87)
408 cd08186 Fe-ADH8 Iron-containin 23.9 4.6E+02 0.0099 22.4 9.1 35 99-133 69-103 (383)
409 PRK05476 S-adenosyl-L-homocyst 23.8 3.8E+02 0.0082 23.6 7.0 54 77-130 60-113 (425)
410 cd01134 V_A-ATPase_A V/A-type 23.7 4.7E+02 0.01 22.5 7.6 37 91-127 219-266 (369)
411 PF09711 Cas_Csn2: CRISPR-asso 23.7 3.3E+02 0.0072 20.9 5.9 47 77-123 117-168 (188)
412 PLN02522 ATP citrate (pro-S)-l 23.6 4.8E+02 0.01 24.2 7.9 65 78-142 66-132 (608)
413 PF02698 DUF218: DUF218 domain 23.5 2.8E+02 0.0061 19.8 6.5 40 76-116 24-69 (155)
414 cd00401 AdoHcyase S-adenosyl-L 23.2 5E+02 0.011 22.7 7.6 59 76-134 47-105 (413)
415 cd02066 GRX_family Glutaredoxi 23.1 1.7E+02 0.0037 17.1 7.4 38 93-130 2-40 (72)
416 PRK15424 propionate catabolism 23.1 5.7E+02 0.012 23.2 9.8 117 91-217 14-137 (538)
417 PRK13019 clpS ATP-dependent Cl 22.7 2.5E+02 0.0054 18.9 6.2 51 66-116 22-89 (94)
418 cd08182 HEPD Hydroxyethylphosp 22.6 4.7E+02 0.01 22.1 8.9 27 100-126 63-89 (367)
419 cd08191 HHD 6-hydroxyhexanoate 22.5 4.9E+02 0.011 22.2 9.1 12 106-117 42-53 (386)
420 PF11116 DUF2624: Protein of u 22.5 1.7E+02 0.0038 19.3 3.6 35 98-138 31-65 (85)
421 KOG2792|consensus 22.4 4.3E+02 0.0094 21.6 6.8 69 72-147 156-228 (280)
422 PF01488 Shikimate_DH: Shikima 22.3 2.9E+02 0.0063 19.5 7.4 85 77-172 23-115 (135)
423 PF00106 adh_short: short chai 22.1 3E+02 0.0065 19.6 8.0 69 80-148 15-88 (167)
424 cd08194 Fe-ADH6 Iron-containin 22.1 5E+02 0.011 22.1 9.2 35 98-132 64-98 (375)
425 COG1099 Predicted metal-depend 21.7 3.9E+02 0.0085 21.4 6.0 38 117-156 182-219 (254)
426 PF09419 PGP_phosphatase: Mito 21.6 3.6E+02 0.0077 20.3 7.5 55 81-139 68-130 (168)
427 PRK00033 clpS ATP-dependent Cl 21.3 2.8E+02 0.006 18.9 6.7 52 66-117 28-95 (100)
428 TIGR01866 cas_Csn2 CRISPR-asso 21.2 3E+02 0.0066 21.6 5.4 48 76-123 148-200 (216)
429 KOG0952|consensus 21.2 3E+02 0.0066 27.3 6.2 77 65-148 127-219 (1230)
430 TIGR01041 ATP_syn_B_arch ATP s 21.1 5.9E+02 0.013 22.6 10.2 76 73-148 150-246 (458)
431 PF03846 SulA: Cell division i 21.1 3.1E+02 0.0067 19.4 5.6 64 81-146 49-116 (119)
432 PF13685 Fe-ADH_2: Iron-contai 21.0 3.8E+02 0.0082 21.6 6.1 61 99-160 60-120 (250)
433 PF02670 DXP_reductoisom: 1-de 21.0 3.2E+02 0.007 19.5 7.5 70 77-154 35-104 (129)
434 TIGR01617 arsC_related transcr 20.9 2.9E+02 0.0063 18.9 5.7 62 94-155 3-67 (117)
435 PRK12902 secA preprotein trans 20.8 4.7E+02 0.01 25.5 7.4 54 80-133 116-173 (939)
436 COG4152 ABC-type uncharacteriz 20.8 4.1E+02 0.0088 21.8 6.0 80 77-163 165-247 (300)
437 cd00532 MGS-like MGS-like doma 20.5 1.2E+02 0.0025 20.8 2.8 41 108-149 36-77 (112)
438 cd08190 HOT Hydroxyacid-oxoaci 20.3 5.7E+02 0.012 22.1 9.0 37 98-134 64-100 (414)
439 TIGR02744 TrbI_Ftype type-F co 20.3 3.1E+02 0.0068 19.1 6.3 39 90-137 30-68 (112)
440 cd03030 GRX_SH3BGR Glutaredoxi 20.3 2.7E+02 0.0059 18.4 5.0 39 99-137 15-53 (92)
441 cd08172 GlyDH-like1 Glycerol d 20.3 5.2E+02 0.011 21.6 8.2 57 92-149 52-110 (347)
442 KOG0327|consensus 20.3 2.1E+02 0.0045 24.7 4.5 25 89-113 93-117 (397)
443 cd00758 MoCF_BD MoCF_BD: molyb 20.0 3.2E+02 0.007 19.2 6.8 50 103-153 21-71 (133)
444 PRK13529 malate dehydrogenase; 20.0 2.4E+02 0.0053 25.7 5.2 54 93-148 101-154 (563)
No 1
>KOG0328|consensus
Probab=100.00 E-value=1.1e-40 Score=259.87 Aligned_cols=221 Identities=58% Similarity=0.883 Sum_probs=203.6
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhh----ccCcccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLI----VGDSMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i----~~~~~~~i~~~~~~~~~~~ 75 (224)
.||++-++-.....++.++... |...|..++|||+|.++.+ +...++.+|+.+ .+-+.+.++++|+.++.++
T Consensus 175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eile---mt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Ee 251 (400)
T KOG0328|consen 175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILE---MTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEE 251 (400)
T ss_pred eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHH---HHHHhcCCceeEEEecCCCchhhhhhheeeechhh
Confidence 4788888888777788887753 6688999999999999864 444777788765 2346678999999999999
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
||.+.|.+++..+.-.+++|||||++.++++.+.++..++.+..+||+|+++||.++..+|++|+.+||++|++.++|+|
T Consensus 252 wKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiD 331 (400)
T KOG0328|consen 252 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGID 331 (400)
T ss_pred hhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCC
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 224 (224)
+|.++.||+||.|-+.+.|.||+||.||.|+.|.++.|+..+|...++.+++++...+.++|+++.+++
T Consensus 332 v~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~i 400 (400)
T KOG0328|consen 332 VQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADLI 400 (400)
T ss_pred cceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999998875
No 2
>KOG0330|consensus
Probab=100.00 E-value=2.7e-37 Score=249.80 Aligned_cols=214 Identities=26% Similarity=0.436 Sum_probs=190.2
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhhccC----cccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLIVGD----SMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~----~~~~i~~~~~~~~~~~ 75 (224)
|||++.++.-.-.-..--+|+. +..+|+++||||++..+.... ...+++|+.+..+ +.+.+.|.|.+++...
T Consensus 210 lDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~---rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~ 286 (476)
T KOG0330|consen 210 LDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQ---RASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD 286 (476)
T ss_pred hchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHH---hhccCCCeEEeccchhcchHHhhhheEeccccc
Confidence 7898888765443333335543 588999999999999986433 5777888777554 4567888999999876
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
|...|..++++..+.++||||+|..+++.++-.|+.+|+.+..+||.|++..|...++.|++|...||+|||++++|+|
T Consensus 287 -K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLD 365 (476)
T KOG0330|consen 287 -KDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLD 365 (476)
T ss_pred -cchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPM 218 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (224)
+|++++|||||.|.+..+|+||+||++|.|+.|.++.+++-.|.+.+.+||...+....+.+.
T Consensus 366 ip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~ 428 (476)
T KOG0330|consen 366 IPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKV 428 (476)
T ss_pred CCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCc
Confidence 999999999999999999999999999999999999999999999999999999988877443
No 3
>KOG0326|consensus
Probab=100.00 E-value=7e-37 Score=242.19 Aligned_cols=218 Identities=32% Similarity=0.551 Sum_probs=195.7
Q ss_pred CcccceeecCCCCcccccccc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhh---ccCcccceeEEEEEecCCcc
Q psy1621 1 MEELQMVCYPPGHGACADVHV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLI---VGDSMTRIRQFYIYIEREDW 76 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i---~~~~~~~i~~~~~~~~~~~~ 76 (224)
|||++-++-..-.+.....+. .|..+|.+++|||.|-.+.. +....+..|..+ ..-++..+.++|.++...+
T Consensus 233 ~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~---Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~q- 308 (459)
T KOG0326|consen 233 MDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKG---FMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQ- 308 (459)
T ss_pred echhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHH---HHHHhccCcceeehhhhhhhcchhhheeeechhh-
Confidence 788888886655544444332 36789999999999998864 444888888876 3456788999999998765
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
|.-.|..+++.+.-.+.|||||+..+++.+|+.+.+.|+.+.++|++|.++.|..++..|++|..+.||||+.+.+|+|+
T Consensus 309 KvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDi 388 (459)
T KOG0326|consen 309 KVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDI 388 (459)
T ss_pred hhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhccccc
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q psy1621 157 QQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVAD 222 (224)
Q Consensus 157 ~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (224)
+.+++||+||.|.+.++|++|+||.||.|..|.++.+++-+|...++++|+.+|.+++++|+....
T Consensus 389 qavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 389 QAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDK 454 (459)
T ss_pred ceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999987643
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-36 Score=261.25 Aligned_cols=211 Identities=36% Similarity=0.557 Sum_probs=184.5
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhhccC------cccceeEEEEEecC
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLIVGD------SMTRIRQFYIYIER 73 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~------~~~~i~~~~~~~~~ 73 (224)
+||++.++...-.-....++.. +.++|+++||||++..+. .+...++++|..+... +...+.|++..+..
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~---~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIR---ELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHH---HHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 5888888887333333333322 338999999999999764 5666888888765332 56889999999987
Q ss_pred CccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 74 EDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
.+.|+..|..++......++||||+|+..++.++..|...|+.+..+||++++++|.++++.|++|+.+|||||+++++|
T Consensus 257 ~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRG 336 (513)
T COG0513 257 EEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARG 336 (513)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhcc
Confidence 65699999999998887899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccc-cHHHHHHHHHHhccccc
Q psy1621 154 IDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAE-DKRTLKDTEQFYNTRIE 214 (224)
Q Consensus 154 vdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 214 (224)
+|+|++++||+||.|.+.+.|.||+||+||.|..|.++.|+.+. +...+..+++..+..++
T Consensus 337 iDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 337 LDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred CCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999986 99999999999876644
No 5
>KOG0333|consensus
Probab=100.00 E-value=2.5e-35 Score=246.09 Aligned_cols=193 Identities=32% Similarity=0.524 Sum_probs=173.5
Q ss_pred cCcccccccccccHhhhhhhhhhHHHhhhhhhh----ccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCc
Q psy1621 24 GARIGAGFNADINVEACADVDVNAAELRRRVLI----VGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNT 99 (224)
Q Consensus 24 ~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i----~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t 99 (224)
.-+|++|||||+++.+. .++..+++.|+.+ .+.+.+.++|.+..++..+ |...|.+++......++|||+|+
T Consensus 451 ~yrqT~mftatm~p~ve---rlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~-k~kkL~eil~~~~~ppiIIFvN~ 526 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVE---RLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDE-KRKKLIEILESNFDPPIIIFVNT 526 (673)
T ss_pred ceeEEEEEecCCChHHH---HHHHHHhhCCeEEEeccCCCCccchheEEEEecchH-HHHHHHHHHHhCCCCCEEEEEec
Confidence 44899999999999874 6788999999876 3456678999999888766 89999999998877899999999
Q ss_pred hHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHh
Q psy1621 100 RRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIG 179 (224)
Q Consensus 100 ~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~G 179 (224)
++.|+.+++.|.+.++.+..+||+-++++|+.+++.|++|...|||||+++++|||||++++||+||++.+.++|.||+|
T Consensus 527 kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIG 606 (673)
T KOG0333|consen 527 KKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIG 606 (673)
T ss_pred hhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcceEEEEeccccHHHHHHHHHHhc-cccccCCcch
Q psy1621 180 RGGRFGRKGVAINFVTAEDKRTLKDTEQFYN-TRIEEMPMNV 220 (224)
Q Consensus 180 R~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 220 (224)
|+||.|+.|.++.|+++.+...++.+.+.+. ..-+-+|+++
T Consensus 607 RTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~El 648 (673)
T KOG0333|consen 607 RTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPEL 648 (673)
T ss_pred cccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhh
Confidence 9999999999999999999887777776654 4444555554
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.7e-35 Score=250.24 Aligned_cols=218 Identities=24% Similarity=0.348 Sum_probs=179.9
Q ss_pred CcccceeecCCCCccc---cccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhcc----CcccceeEEEEEecC
Q psy1621 1 MEELQMVCYPPGHGAC---ADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVG----DSMTRIRQFYIYIER 73 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~----~~~~~i~~~~~~~~~ 73 (224)
+||++.++........ ...+|...+++.+++|||++..+.. +....+..|..+.. .....+.+.+.....
T Consensus 163 iDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~---~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~ 239 (423)
T PRK04837 163 LDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRE---LAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSN 239 (423)
T ss_pred EecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHH---HHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCH
Confidence 5899988765433332 3344656778899999999887643 22344444443321 223455566655554
Q ss_pred CccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 74 EDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
. .|...|..++......++||||++++.|+.+++.|.+.++.+..+||++++++|..++++|++|+.+|||||+++++|
T Consensus 240 ~-~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rG 318 (423)
T PRK04837 240 E-EKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARG 318 (423)
T ss_pred H-HHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcC
Confidence 4 499999999887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q psy1621 154 IDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVAD 222 (224)
Q Consensus 154 vdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (224)
+|+|++++||+||.|.+.+.|.||+||+||.|+.|.++.|+.+.+...+..+++.++..++..+.+..+
T Consensus 319 iDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 387 (423)
T PRK04837 319 LHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSDA 387 (423)
T ss_pred CCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChhh
Confidence 999999999999999999999999999999999999999999999999999999999888776665544
No 7
>KOG0331|consensus
Probab=100.00 E-value=7.1e-35 Score=247.80 Aligned_cols=217 Identities=31% Similarity=0.484 Sum_probs=184.2
Q ss_pred cccceeecCCCCccccccccC--ccCcccccccccccHhhhhhhhhhHHHhhhhhhhcc------CcccceeEEEEEecC
Q psy1621 2 EELQMVCYPPGHGACADVHVN--VGARIGAGFNADINVEACADVDVNAAELRRRVLIVG------DSMTRIRQFYIYIER 73 (224)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~------~~~~~i~~~~~~~~~ 73 (224)
||++..+.-.-..+...++.. +..+|++++|||.|.++. .++.+++.+|..+.. ....++.|....++.
T Consensus 246 DEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~---~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~ 322 (519)
T KOG0331|consen 246 DEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVR---QLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDE 322 (519)
T ss_pred ccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHH---HHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCH
Confidence 677655554455555555532 344599999999999985 577788887765522 234567777777774
Q ss_pred CccHHHHHHHHhccC---CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q psy1621 74 EDWKFDTLCDLYGTL---SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLL 150 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~---~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~ 150 (224)
..|...|.+++... .++++||||+|++.|+.++..|+..++++..+||+.++.+|..+++.|++|+..|||||+++
T Consensus 323 -~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA 401 (519)
T KOG0331|consen 323 -TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA 401 (519)
T ss_pred -HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccc
Confidence 34887777777654 57799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q psy1621 151 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVAD 222 (224)
Q Consensus 151 ~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (224)
++|+|+|++++||+||+|.+.++|+||+||+||.|+.|.++.|++..+......+-+.++.....+|.++.+
T Consensus 402 aRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~ 473 (519)
T KOG0331|consen 402 ARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLE 473 (519)
T ss_pred cccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888888877654
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.8e-34 Score=247.73 Aligned_cols=212 Identities=26% Similarity=0.427 Sum_probs=178.2
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhhcc---CcccceeEEEEEecCCcc
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLIVG---DSMTRIRQFYIYIEREDW 76 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~---~~~~~i~~~~~~~~~~~~ 76 (224)
+||++.++...-...+..++-. +..+|++++|||+++.+.. +....++.|..+.. .....+.+.+..++..+
T Consensus 153 iDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~---l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~- 228 (460)
T PRK11776 153 LDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAA---ISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDE- 228 (460)
T ss_pred EECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHH---HHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHH-
Confidence 5888876654433333333322 4578999999999987643 33355555554422 23345778888777766
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
|.+.+..++....+.++||||+|++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 229 k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi 308 (460)
T PRK11776 229 RLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDI 308 (460)
T ss_pred HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccch
Confidence 99999999988778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccC
Q psy1621 157 QQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEM 216 (224)
Q Consensus 157 ~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (224)
|++++||++|.|.+..+|.||+||+||.|+.|.++.++.+.+...+..+++.++..+...
T Consensus 309 ~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~ 368 (460)
T PRK11776 309 KALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWE 368 (460)
T ss_pred hcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCcee
Confidence 999999999999999999999999999999999999999999999999999988766543
No 9
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-33 Score=248.92 Aligned_cols=219 Identities=26% Similarity=0.414 Sum_probs=180.3
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhh-hhhhhcc-----CcccceeEEEEEecC
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELR-RRVLIVG-----DSMTRIRQFYIYIER 73 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~-~~~~i~~-----~~~~~i~~~~~~~~~ 73 (224)
+||++.++......+...++.. +..+|++++|||++.++.. +....+. .++.+.. ....++.+.+..+..
T Consensus 283 iDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~---l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~ 359 (545)
T PTZ00110 283 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQS---LARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE 359 (545)
T ss_pred eehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHH---HHHHHhccCCEEEEECCCccccCCCeeEEEEEEec
Confidence 5888877765433333333322 4578999999999987643 2223332 2332211 233567777776665
Q ss_pred CccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q psy1621 74 EDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~ 151 (224)
.+ |...|.+++... .+.++||||++++.|+.+++.|...++.+..+||++++++|..++++|++|+.+|||||++++
T Consensus 360 ~~-k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~ 438 (545)
T PTZ00110 360 HE-KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVAS 438 (545)
T ss_pred hh-HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhh
Confidence 44 888888888765 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q psy1621 152 RGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADL 223 (224)
Q Consensus 152 ~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 223 (224)
+|+|+|++++||+||.|.+.++|.||+||+||.|..|.++.|+++++......+.+.+.....++|..+.++
T Consensus 439 rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 510 (545)
T PTZ00110 439 RGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKL 510 (545)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999877654
No 10
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-33 Score=247.90 Aligned_cols=213 Identities=26% Similarity=0.426 Sum_probs=176.8
Q ss_pred CcccceeecCCCCcc---ccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhc----cCcccceeEEEEEecC
Q psy1621 1 MEELQMVCYPPGHGA---CADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIV----GDSMTRIRQFYIYIER 73 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~----~~~~~~i~~~~~~~~~ 73 (224)
+||+++++....... ++..+|....+|+++||||++..+.. +....+..+..+. ......+.+.+.....
T Consensus 165 iDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~---l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~ 241 (572)
T PRK04537 165 LDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLE---LAYEHMNEPEKLVVETETITAARVRQRIYFPAD 241 (572)
T ss_pred ecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHH---HHHHHhcCCcEEEeccccccccceeEEEEecCH
Confidence 689997765433322 33345555678999999999987653 3334555543321 1233456666666655
Q ss_pred CccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 74 EDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
.+ |...+..++....+.++||||+|++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 242 ~~-k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arG 320 (572)
T PRK04537 242 EE-KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARG 320 (572)
T ss_pred HH-HHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcC
Confidence 44 89999999887778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q psy1621 154 IDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMP 217 (224)
Q Consensus 154 vdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (224)
||+|++++||+||.|.+.+.|+||+||+||.|..|.++.|+.+.+...+..+++.++.++...+
T Consensus 321 IDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~ 384 (572)
T PRK04537 321 LHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEP 384 (572)
T ss_pred CCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999888775543
No 11
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.1e-33 Score=242.15 Aligned_cols=211 Identities=27% Similarity=0.457 Sum_probs=173.8
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhhc----cCcccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLIV----GDSMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~----~~~~~~i~~~~~~~~~~~ 75 (224)
+||++.++.+........++.. +..+|.+++|||++.++.. +....+..+..+. ......+.+++..++...
T Consensus 155 iDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~---l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~ 231 (456)
T PRK10590 155 LDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKA---LAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR 231 (456)
T ss_pred eecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHH---HHHHHcCCCeEEEEecccccccceeEEEEEcCHHH
Confidence 5899887654432222222221 3567999999999987543 2234444444331 223456677777776544
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
|.+.+..++......++||||++++.++.+++.|.+.++.+..+||++++.+|..++++|++|+++|||||+++++|+|
T Consensus 232 -k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiD 310 (456)
T PRK10590 232 -KRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLD 310 (456)
T ss_pred -HHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCC
Confidence 8888888888777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhcccccc
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEE 215 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (224)
+|++++||+|+.|.+..+|.||+||+||.|..|.++.++..++...++.+++.++.+++.
T Consensus 311 ip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~ 370 (456)
T PRK10590 311 IEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPR 370 (456)
T ss_pred cccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999999999999999887754
No 12
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.6e-33 Score=248.32 Aligned_cols=214 Identities=27% Similarity=0.428 Sum_probs=180.3
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhhc----cCcccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLIV----GDSMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~----~~~~~~i~~~~~~~~~~~ 75 (224)
+||++.++.......+..++-. +..+|+++||||+|+.+.. +...++..|..+. ......+.+.|..+....
T Consensus 155 lDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~---i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~ 231 (629)
T PRK11634 155 LDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRR---ITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR 231 (629)
T ss_pred eccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHH---HHHHHcCCCeEEEccCccccCCceEEEEEEechhh
Confidence 5899977665555555444432 4578999999999987642 3345555554331 123456677777776554
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
|.+.|..++......++||||+|++.++.+++.|.+.++.+..+||++++.+|..++++|++|+++|||||+++++|+|
T Consensus 232 -k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGID 310 (629)
T PRK11634 232 -KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 (629)
T ss_pred -HHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCC
Confidence 9999999988777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPM 218 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (224)
+|++++||+||.|.+.++|+||+||+||.|+.|.+++++...+...++.+++.++..+.+++.
T Consensus 311 ip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~ 373 (629)
T PRK11634 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 373 (629)
T ss_pred cccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecC
Confidence 999999999999999999999999999999999999999999999999999999888877543
No 13
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.7e-33 Score=243.56 Aligned_cols=218 Identities=24% Similarity=0.424 Sum_probs=177.4
Q ss_pred CcccceeecCCCCccccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhc----cCcccceeEEEEEecCCcc
Q psy1621 1 MEELQMVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIV----GDSMTRIRQFYIYIEREDW 76 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~----~~~~~~i~~~~~~~~~~~~ 76 (224)
+||++.+..+.-..+...++-.....|++++|||++.++.. +....+..+..+. ......+.+.+..+....
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~~v~~---l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~- 351 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSPEVEK---FASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQ- 351 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCHHHHH---HHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchh-
Confidence 58999887765555554444444567999999999987642 3334444444332 123345666666666544
Q ss_pred HHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHh-CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 77 KFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLK-KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 77 k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~-~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
|...+.+++... ...++||||+++..++.+++.|.. .++.+..+||++++++|..++++|++|+.+|||||+++++|
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rG 431 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRG 431 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhcc
Confidence 777788877654 246899999999999999999975 58899999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q psy1621 154 IDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVAD 222 (224)
Q Consensus 154 vdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (224)
+|+|++++||+||+|.+..+|.||+||+||.|..|.+++|+..++...+..+.+.++.....+|.++.+
T Consensus 432 iDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 500 (518)
T PLN00206 432 VDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELAN 500 (518)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998888778876643
No 14
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.2e-33 Score=237.46 Aligned_cols=219 Identities=60% Similarity=0.920 Sum_probs=183.8
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhhc----cCcccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLIV----GDSMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~----~~~~~~i~~~~~~~~~~~ 75 (224)
+||++.+..+...+....++-. +...|.+++|||++.++.. ....+++.+..+. ......+.+++..++..+
T Consensus 176 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (401)
T PTZ00424 176 LDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILE---LTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEE 252 (401)
T ss_pred EecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHH---HHHHHcCCCEEEEeCCCCcccCCceEEEEecChHH
Confidence 5899988776555444443322 3567899999999987643 3334444443321 123456677777777666
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
.+...+..++......++||||+|++.++.+++.|...++.+..+||++++++|..+++.|++|+++|||||+++++|+|
T Consensus 253 ~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiD 332 (401)
T PTZ00424 253 WKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGID 332 (401)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcC
Confidence 68888888888777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVAD 222 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (224)
+|++++||+++.|.+...|.||+||+||.|..|.|+.++.+++...++.+++.++..+.+.++...+
T Consensus 333 ip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 399 (401)
T PTZ00424 333 VQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVAD 399 (401)
T ss_pred cccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999988876544
No 15
>KOG0332|consensus
Probab=100.00 E-value=1.3e-32 Score=221.75 Aligned_cols=214 Identities=35% Similarity=0.581 Sum_probs=186.6
Q ss_pred cccceeecCCCCcccccccc--CccCcccccccccccHhhhhhhhhhHHHhhhhhhh----ccCcccceeEEEEEecCCc
Q psy1621 2 EELQMVCYPPGHGACADVHV--NVGARIGAGFNADINVEACADVDVNAAELRRRVLI----VGDSMTRIRQFYIYIERED 75 (224)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i----~~~~~~~i~~~~~~~~~~~ 75 (224)
||++--++-+|++.-..-.- .+...|.++||||....+. .++...++++..+ ..-..+++.++|..|..++
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~---~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~ 315 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVA---AFALKIVPNANVIILKREELALDNIKQLYVLCACRD 315 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHH---HHHHHhcCCCceeeeehhhccccchhhheeeccchh
Confidence 67777777777776544221 2467899999999988775 4555666665544 2346789999999999999
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
.|.++|.+++.-..-++.||||.|++++.+++..+++.|..+..+||.|..++|..++++|+.|+.+|||+|+++.+|+|
T Consensus 316 ~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiD 395 (477)
T KOG0332|consen 316 DKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGID 395 (477)
T ss_pred hHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccc
Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCC------ChhHHHHHHhhccCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCc
Q psy1621 156 VQQVSLVINYDLPS------NRENYIHRIGRGGRFGRKGVAINFVTAE-DKRTLKDTEQFYNTRIEEMPM 218 (224)
Q Consensus 156 i~~~~~vi~~~~p~------s~~~~~q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (224)
++.++.||+||.|. +.+.|+||+||+||.|+.|.++.++.+. +...+.+|+++++..+..+.+
T Consensus 396 v~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 396 VAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred cceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 99999999999994 6899999999999999999999998874 778888999999888877655
No 16
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.9e-32 Score=236.29 Aligned_cols=213 Identities=29% Similarity=0.456 Sum_probs=173.6
Q ss_pred CcccceeecCCCCcccccccc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhhcc----CcccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGHGACADVHV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLIVG----DSMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~----~~~~~i~~~~~~~~~~~ 75 (224)
+||++.++...-......+.. .+..+|+++||||++..... .+....+..+..+.. .....+.+++..++...
T Consensus 153 iDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~ 230 (434)
T PRK11192 153 LDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQ--DFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLE 230 (434)
T ss_pred EECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHH--HHHHHHccCCEEEEecCCcccccCceEEEEEeCCHH
Confidence 588887665432222222222 24557899999999764322 223344444544322 22345677777777666
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
.|.+.|..++......++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+++|||||+++++|+|
T Consensus 231 ~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiD 310 (434)
T PRK11192 231 HKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGID 310 (434)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCcc
Confidence 69999999998767789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhcccccc
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEE 215 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (224)
+|++++||+||.|.+...|.||+||+||.|..|.+++++...|...+.++++++..++..
T Consensus 311 ip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 311 IDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred CCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999988776644
No 17
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-32 Score=237.09 Aligned_cols=210 Identities=25% Similarity=0.408 Sum_probs=172.7
Q ss_pred CcccceeecCCCCc---cccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhc----cCcccceeEEEEEecC
Q psy1621 1 MEELQMVCYPPGHG---ACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIV----GDSMTRIRQFYIYIER 73 (224)
Q Consensus 1 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~----~~~~~~i~~~~~~~~~ 73 (224)
+||++.++...... .++...+....+|++++|||++..+.. .....+..+..+. ......+.+++..+..
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 319 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMN---LAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG 319 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHH---HHHHhccCCEEEEeccCcCCCCcccEEEEEecc
Confidence 58888776432211 233344555678999999999876543 2334444444321 1122445566666655
Q ss_pred CccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 74 EDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
.+ |...+.+++......++||||+++++++.+++.|.+.++.+..+||+++.++|.++++.|++|+++|||||+++++|
T Consensus 320 ~~-k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~G 398 (475)
T PRK01297 320 SD-KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRG 398 (475)
T ss_pred hh-HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Confidence 44 88899999887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccc
Q psy1621 154 IDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIE 214 (224)
Q Consensus 154 vdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (224)
+|+|++++||+++.|.|..+|+||+||+||.|+.|.+++|+.++|...+..+++.++.++.
T Consensus 399 IDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 399 IHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred CcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999998874
No 18
>KOG0340|consensus
Probab=100.00 E-value=3e-32 Score=218.33 Aligned_cols=216 Identities=29% Similarity=0.429 Sum_probs=181.9
Q ss_pred Cccccee---ecCCCCccccccccCccCcccccccccccHhhhhhhhhhHHH--hhh-hhhhccCcccceeEEEEEecCC
Q psy1621 1 MEELQMV---CYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAE--LRR-RVLIVGDSMTRIRQFYIYIERE 74 (224)
Q Consensus 1 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~--l~~-~~~i~~~~~~~i~~~~~~~~~~ 74 (224)
|||++-+ ||+..-..|.+.+|.+ ||+++||||+.+.+.+.....-.. ... ...-..+..+.+.+.|+.++..
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~--RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~ 236 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKP--RQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSID 236 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCc--cceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchh
Confidence 5676654 5555666676777765 999999999998876544422111 000 0011224566788889999876
Q ss_pred ccHHHHHHHHhccC---CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q psy1621 75 DWKFDTLCDLYGTL---SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151 (224)
Q Consensus 75 ~~k~~~l~~ll~~~---~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~ 151 (224)
. |-.+|+.+++.. ....++||+|+..+|+.++.-|+..++++..+||.|++.+|...+.+|+++..+|||||++++
T Consensus 237 v-kdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAs 315 (442)
T KOG0340|consen 237 V-KDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVAS 315 (442)
T ss_pred h-hHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhh
Confidence 6 999999998765 357899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcc
Q psy1621 152 RGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMN 219 (224)
Q Consensus 152 ~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (224)
+|+|||.+..|+|+|.|.++..|.||+||..|.|+.|.++.+++..|.+.+..+|+..|..+.+.+..
T Consensus 316 RGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~ 383 (442)
T KOG0340|consen 316 RGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKV 383 (442)
T ss_pred cCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999887753
No 19
>KOG0342|consensus
Probab=100.00 E-value=1.5e-32 Score=228.00 Aligned_cols=204 Identities=23% Similarity=0.326 Sum_probs=174.6
Q ss_pred CcccceeecCCCCcccccccc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhh------ccCcccceeEEEEEecC
Q psy1621 1 MEELQMVCYPPGHGACADVHV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLI------VGDSMTRIRQFYIYIER 73 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i------~~~~~~~i~~~~~~~~~ 73 (224)
+||++-++.-.=.-....+.- .+.++|+++||||.+++|.+....+... .++.+ ...+.++++|.|+.++.
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~--d~~~v~~~d~~~~~The~l~Qgyvv~~~ 313 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKR--DPVFVNVDDGGERETHERLEQGYVVAPS 313 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcC--CceEeecCCCCCcchhhcccceEEeccc
Confidence 577777776555544444332 2489999999999999987554433222 24433 23467789999999988
Q ss_pred CccHHHHHHHHhccCCC-CcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q psy1621 74 EDWKFDTLCDLYGTLSI-TQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLAR 152 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~~~-~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~ 152 (224)
.. ++..+..+++.+.. .++||||+|...+..+++.|...+++|..+||+.++..|..+..+|.+.+.-||+||+++++
T Consensus 314 ~~-~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaAR 392 (543)
T KOG0342|consen 314 DS-RFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAAR 392 (543)
T ss_pred cc-hHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhc
Confidence 77 68889999887644 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHH
Q psy1621 153 GIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQ 207 (224)
Q Consensus 153 Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 207 (224)
|+|+|++++|++||+|.++.+|+||+||+||.|..|.+++++.+++..++..+.+
T Consensus 393 GlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 393 GLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred cCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999984
No 20
>KOG0345|consensus
Probab=99.97 E-value=5.5e-32 Score=223.56 Aligned_cols=204 Identities=25% Similarity=0.385 Sum_probs=175.4
Q ss_pred CcccceeecCCCCcccccccc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhhccC------cccceeEEEEEecC
Q psy1621 1 MEELQMVCYPPGHGACADVHV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGD------SMTRIRQFYIYIER 73 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~------~~~~i~~~~~~~~~ 73 (224)
|||++.|+.-+--.....++. .|.+|.|.+||||...++. ++...++++|+.+... ++..+..+|..+..
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~---dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a 239 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVE---DLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA 239 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHH---HHHHhhccCceeeeecccccccCchhhcceeeEecH
Confidence 688888887665555555554 4789999999999999886 4666999999986332 45567888888887
Q ss_pred CccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q psy1621 74 EDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~ 151 (224)
.+ |...|.+++......++|||++|++.+++++..+... +..+..+||+|++..|.++++.|......+|+|||+++
T Consensus 240 ~e-K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaA 318 (567)
T KOG0345|consen 240 DE-KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAA 318 (567)
T ss_pred HH-HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhh
Confidence 66 9999999999988899999999999999999998776 56899999999999999999999998888999999999
Q ss_pred cCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHh
Q psy1621 152 RGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFY 209 (224)
Q Consensus 152 ~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 209 (224)
+|+|||++++||+||+|.++.+|.||+||++|.|+.|.+++|+.+.+.. |..+.+.-
T Consensus 319 RGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a-YveFl~i~ 375 (567)
T KOG0345|consen 319 RGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEA-YVEFLRIK 375 (567)
T ss_pred ccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHH-HHHHHHhc
Confidence 9999999999999999999999999999999999999999999885444 44444433
No 21
>KOG0327|consensus
Probab=99.97 E-value=6e-32 Score=218.68 Aligned_cols=217 Identities=59% Similarity=0.870 Sum_probs=198.2
Q ss_pred cccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhh----ccCcccceeEEEEEecCCcc
Q psy1621 2 EELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLI----VGDSMTRIRQFYIYIEREDW 76 (224)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i----~~~~~~~i~~~~~~~~~~~~ 76 (224)
||+++.+-.....++.+++-+ +...|.+++|||+|.++. .....+++.|+.+ .+-+.+.++|+|..+..+.
T Consensus 176 DEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl---~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~- 251 (397)
T KOG0327|consen 176 DEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVL---EVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE- 251 (397)
T ss_pred cchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHH---HHHHHhccCceEEEecchhhhhhheeeeeeeccccc-
Confidence 677887777777777777764 677799999999999984 5666888887765 3346788999999999887
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
|+..|.++++ .-.+.+|||||++.++.+...|..++..+..+||.+.+.+|..+...|++|..+|||+|+.+++|+|+
T Consensus 252 k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv 329 (397)
T KOG0327|consen 252 KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDV 329 (397)
T ss_pred cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccch
Confidence 9999999999 45689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q psy1621 157 QQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224 (224)
Q Consensus 157 ~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 224 (224)
..+..|++|+.|...++|.+|+||+||.|..|.++.++.+.+...+++++++++.++.++|.+..+|+
T Consensus 330 ~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l~ 397 (397)
T KOG0327|consen 330 QQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADLL 397 (397)
T ss_pred hhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999988875
No 22
>KOG0336|consensus
Probab=99.97 E-value=7.6e-31 Score=214.02 Aligned_cols=216 Identities=25% Similarity=0.418 Sum_probs=183.9
Q ss_pred cccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhhccCcc-----cceeEEEEEecCCc
Q psy1621 2 EELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSM-----TRIRQFYIYIERED 75 (224)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~-----~~i~~~~~~~~~~~ 75 (224)
||++-.+.-.---++..++-. ...+|++|-|||.|+-+. .++..+++.|+.+...+. ..+.|.+ .+..+.
T Consensus 374 DEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~Vr---rLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~ 449 (629)
T KOG0336|consen 374 DEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVR---RLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDS 449 (629)
T ss_pred cchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHH---HHHHHhhhCceEEEecccceeeeeeeeeeE-EecccH
Confidence 555433332222333333332 457999999999999885 577799999998755443 4667777 555666
Q ss_pred cHHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 76 WKFDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 76 ~k~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
.|++.+..++..+ +..++||||..+..|+.+..-|.-.|+....+||+-++.+|+..++.|++|+++|||||+.+++|+
T Consensus 450 ~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGl 529 (629)
T KOG0336|consen 450 EKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGL 529 (629)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCC
Confidence 6999999988876 678999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchh
Q psy1621 155 DVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVA 221 (224)
Q Consensus 155 di~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (224)
|+++++||++||.|.+.+.|.||+||.||.|+.|.++.|+.-+|-....++-+++...-.++|.++.
T Consensus 530 Dv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~ 596 (629)
T KOG0336|consen 530 DVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELV 596 (629)
T ss_pred CchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888887663
No 23
>KOG0341|consensus
Probab=99.97 E-value=1.4e-31 Score=216.97 Aligned_cols=216 Identities=27% Similarity=0.431 Sum_probs=177.8
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhhcc----CcccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLIVG----DSMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~----~~~~~i~~~~~~~~~~~ 75 (224)
|||++-+..-.--+.+..++.. +.+||+++||||+|..+. .++...+-.|+.+.. ...-++.+.+.++..+.
T Consensus 332 lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ---~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEa 408 (610)
T KOG0341|consen 332 LDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQ---NFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEA 408 (610)
T ss_pred hhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHH---HHHHhhcccceEEecccccccchhHHHHHHHHHhhh
Confidence 5788877777777788888876 899999999999999863 456666666665522 22224444444444443
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
|+-.|.+-+... ..++||||..+..++.+.++|.-.|..+..+|||-.+++|...++.|+.|+-+|||||++++.|+|
T Consensus 409 -KiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLD 486 (610)
T KOG0341|consen 409 -KIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLD 486 (610)
T ss_pred -hhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCC
Confidence 888888877653 369999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCcchh
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAE-DKRTLKDTEQFYNTRIEEMPMNVA 221 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 221 (224)
+|++.||||||+|...+.|.+|+||+||.|+.|.+..|+.+. +...+..+...+-..-.++|.-+.
T Consensus 487 Fp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~ 553 (610)
T KOG0341|consen 487 FPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLA 553 (610)
T ss_pred CccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHH
Confidence 999999999999999999999999999999999999999885 666677777766666666665443
No 24
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=9.3e-30 Score=221.18 Aligned_cols=203 Identities=19% Similarity=0.301 Sum_probs=151.5
Q ss_pred CcccceeecCCCC--c---cccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhccC-cccceeEEEEEecCC
Q psy1621 1 MEELQMVCYPPGH--G---ACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGD-SMTRIRQFYIYIERE 74 (224)
Q Consensus 1 ~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~-~~~~i~~~~~~~~~~ 74 (224)
+||++++..|... . ......-.....+.+.+|||.++.+...+... ..+..+.....+ ..+++ .+......
T Consensus 133 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~-l~l~~~~~~~~s~~r~nl--~~~v~~~~ 209 (470)
T TIGR00614 133 VDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQ-LNLKNPQIFCTSFDRPNL--YYEVRRKT 209 (470)
T ss_pred EeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHH-cCCCCCcEEeCCCCCCCc--EEEEEeCC
Confidence 5899987665321 0 11111111234678999999988765333211 112233322222 22222 23333333
Q ss_pred ccHHHHHHHHhc-cCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 75 DWKFDTLCDLYG-TLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 75 ~~k~~~l~~ll~-~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
......+.+++. ..++.++||||+|++.++.+++.|.+.++.+..+||+|++++|..++++|++|+++|||||+++++|
T Consensus 210 ~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~G 289 (470)
T TIGR00614 210 PKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMG 289 (470)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhcc
Confidence 235666777665 4456677999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHH
Q psy1621 154 IDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTE 206 (224)
Q Consensus 154 vdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 206 (224)
+|+|++++||+++.|.|.+.|+||+||+||.|..|.|+++++..|...++.+.
T Consensus 290 ID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 290 INKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred CCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988777666554
No 25
>KOG0335|consensus
Probab=99.97 E-value=1.2e-29 Score=212.91 Aligned_cols=197 Identities=29% Similarity=0.474 Sum_probs=173.0
Q ss_pred cCccCcccccccccccHhhhhhhhhhHHHhhh-----hhhhccCcccceeEEEEEecCCccHHHHHHHHhccCC----C-
Q psy1621 21 VNVGARIGAGFNADINVEACADVDVNAAELRR-----RVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLS----I- 90 (224)
Q Consensus 21 ~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~-----~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~----~- 90 (224)
|+...+|++|||||.|.++-. ++..++.. .+...++...++.|.+..+...+ |...|.+++.... .
T Consensus 258 ~~~~~~qt~mFSAtfp~~iq~---l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~-kr~~Lldll~~~~~~~~~~ 333 (482)
T KOG0335|consen 258 PPKNNRQTLLFSATFPKEIQR---LAADFLKDNYIFLAVGRVGSTSENITQKILFVNEME-KRSKLLDLLNKDDGPPSDG 333 (482)
T ss_pred CCccceeEEEEeccCChhhhh---hHHHHhhccceEEEEeeeccccccceeEeeeecchh-hHHHHHHHhhcccCCcccC
Confidence 446789999999999998642 33344433 34457788899999999998776 8888888886432 2
Q ss_pred ----CcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeC
Q psy1621 91 ----TQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYD 166 (224)
Q Consensus 91 ----~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~ 166 (224)
++++|||.|++.|..++..|...++++..+||..++.+|.+.++.|++|+..+||||+++++|+|+|++.|||+||
T Consensus 334 ~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyD 413 (482)
T KOG0335|consen 334 EPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYD 413 (482)
T ss_pred CcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEee
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchh
Q psy1621 167 LPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVA 221 (224)
Q Consensus 167 ~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (224)
+|.+..+|.||+||+||.|..|.+..|+...+....+.+.+.+...-.+.|.=+.
T Consensus 414 mP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~ 468 (482)
T KOG0335|consen 414 MPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLS 468 (482)
T ss_pred cCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHH
Confidence 9999999999999999999999999999999999999999999887777775443
No 26
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=1.8e-29 Score=225.03 Aligned_cols=202 Identities=20% Similarity=0.297 Sum_probs=152.9
Q ss_pred CcccceeecCCCCc----ccccccc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhhccC-cccceeEEEEEecCC
Q psy1621 1 MEELQMVCYPPGHG----ACADVHV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGD-SMTRIRQFYIYIERE 74 (224)
Q Consensus 1 ~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~-~~~~i~~~~~~~~~~ 74 (224)
+||++.+..|.... ..++.+. .....+.+++|||.++.+...+.. ...+..|...... ..+++ .+......
T Consensus 145 IDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~-~l~l~~~~~~~~~~~r~nl--~~~v~~~~ 221 (607)
T PRK11057 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR-LLGLNDPLIQISSFDRPNI--RYTLVEKF 221 (607)
T ss_pred EeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHH-HhCCCCeEEEECCCCCCcc--eeeeeecc
Confidence 58999887654221 1111111 123467899999998865432211 1112233322222 22222 23333333
Q ss_pred ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 75 DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 75 ~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
. +...+..++....+.++||||+|+++|+.+++.|.+.++.+..+||+|++++|..+++.|++|+.+|||||+++++|+
T Consensus 222 ~-~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GI 300 (607)
T PRK11057 222 K-PLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGI 300 (607)
T ss_pred c-hHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccC
Confidence 3 666777777766778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHH
Q psy1621 155 DVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTE 206 (224)
Q Consensus 155 di~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 206 (224)
|+|++++||+++.|.|.++|+|++||+||+|..|.|+++++..|...++.+.
T Consensus 301 Dip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988766655443
No 27
>KOG0343|consensus
Probab=99.97 E-value=6.5e-30 Score=214.95 Aligned_cols=195 Identities=26% Similarity=0.442 Sum_probs=171.1
Q ss_pred ccCcccccccccccHhhhhhhhhhHHHhhhhhhh------ccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEE
Q psy1621 23 VGARIGAGFNADINVEACADVDVNAAELRRRVLI------VGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIF 96 (224)
Q Consensus 23 ~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i------~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf 96 (224)
|..+||++||||-...+. ++++-.+.+|..+ ..+++.++.|+|+.++.++ |++.|...++.+...+.|||
T Consensus 244 P~~RQTLLFSATqt~svk---dLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~-Ki~~L~sFI~shlk~K~iVF 319 (758)
T KOG0343|consen 244 PKKRQTLLFSATQTKSVK---DLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLED-KIDMLWSFIKSHLKKKSIVF 319 (758)
T ss_pred ChhheeeeeecccchhHH---HHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhh-HHHHHHHHHHhccccceEEE
Confidence 567999999999888765 4555667777765 2356789999999999877 99999999999888999999
Q ss_pred eCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHH
Q psy1621 97 CNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENY 174 (224)
Q Consensus 97 ~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~ 174 (224)
+.|++++..+++.+.+. |+.+..+||+|++..|..+.++|.+.+.-||+||+++++|+|+|.+++||++|.|.+..+|
T Consensus 320 ~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tY 399 (758)
T KOG0343|consen 320 LSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTY 399 (758)
T ss_pred EehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHH
Confidence 99999999999999876 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCcceEEEEecccc-HHHHHHHHHHhccccccCCcchhc
Q psy1621 175 IHRIGRGGRFGRKGVAINFVTAED-KRTLKDTEQFYNTRIEEMPMNVAD 222 (224)
Q Consensus 175 ~q~~GR~~R~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 222 (224)
+||+||++|.+..|.+++++.+.+ ...+..+++.. +++.++..+.++
T Consensus 400 IHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i~~~k 447 (758)
T KOG0343|consen 400 IHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKIDPEK 447 (758)
T ss_pred HHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhccCHHH
Confidence 999999999999999999999987 55666666643 777776655443
No 28
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.96 E-value=2.7e-29 Score=229.05 Aligned_cols=205 Identities=18% Similarity=0.238 Sum_probs=152.9
Q ss_pred CcccceeecCCCC--cc--cccccc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGH--GA--CADVHV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~--~~--~~~~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~ 75 (224)
+||+..+..|.-. .+ -+..+- .-...+.+.+|||.++.+...+.... .+..+.....+ ..+...+|..+....
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L-~l~~~~vfr~S-f~RpNL~y~Vv~k~k 664 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQAL-GLVNCVVFRQS-FNRPNLWYSVVPKTK 664 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHc-CCCCcEEeecc-cCccceEEEEeccch
Confidence 5888877665421 01 111121 12346788999999887654333111 12223222222 122223444454433
Q ss_pred cHHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 76 WKFDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 76 ~k~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
.....+.+++... ...++||||+|++.|+.+++.|.+.|+.+..|||+|++++|..++++|.+|+++|||||+++++||
T Consensus 665 k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGI 744 (1195)
T PLN03137 665 KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGI 744 (1195)
T ss_pred hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCC
Confidence 2345666666543 457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHH
Q psy1621 155 DVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQ 207 (224)
Q Consensus 155 di~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 207 (224)
|+|++++||||++|.|.+.|+|++|||||+|..|.|++|++..|...++.+.+
T Consensus 745 DkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 745 NKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998877766665543
No 29
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.96 E-value=5.9e-29 Score=221.75 Aligned_cols=203 Identities=22% Similarity=0.289 Sum_probs=151.8
Q ss_pred CcccceeecCCCCc-----cccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGHG-----ACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~ 75 (224)
+||++.+..|.... ........-...+.+.+|||.++.+...+... ..+..+.....+ ..+....+.......
T Consensus 133 iDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~-l~~~~~~~~~~~-~~r~nl~~~v~~~~~ 210 (591)
T TIGR01389 133 VDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIREL-LRLADANEFITS-FDRPNLRFSVVKKNN 210 (591)
T ss_pred EeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHH-cCCCCCCeEecC-CCCCCcEEEEEeCCC
Confidence 58888876543211 11111111123348899999988765433211 111222222221 112222333333333
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
+...+.+++....+.++||||+|++.++.+++.|...++++..+||+|+.++|..+++.|.+|+++|||||+++++|||
T Consensus 211 -~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID 289 (591)
T TIGR01389 211 -KQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGID 289 (591)
T ss_pred -HHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCc
Confidence 7788888887766789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHH
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTE 206 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 206 (224)
+|++++||++++|.|.+.|+|++||+||+|..+.|+++++..|...++.+.
T Consensus 290 ~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 290 KPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887766555443
No 30
>KOG0338|consensus
Probab=99.96 E-value=5.2e-30 Score=213.80 Aligned_cols=183 Identities=28% Similarity=0.443 Sum_probs=159.6
Q ss_pred ccCcccccccccccHhhhhhhhhhHHHhhhhhhhcc----CcccceeEEEEEec--CCccHHHHHHHHhccCCCCcEEEE
Q psy1621 23 VGARIGAGFNADINVEACADVDVNAAELRRRVLIVG----DSMTRIRQFYIYIE--REDWKFDTLCDLYGTLSITQAVIF 96 (224)
Q Consensus 23 ~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~----~~~~~i~~~~~~~~--~~~~k~~~l~~ll~~~~~~~~iIf 96 (224)
+..||+++|||||+.++-+ +..-.++.|+.+.. .....+.+.|+.+. .+..+-..|..++...-...+|||
T Consensus 356 pk~RQTmLFSATMteeVkd---L~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivF 432 (691)
T KOG0338|consen 356 PKNRQTMLFSATMTEEVKD---LASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVF 432 (691)
T ss_pred cccccceeehhhhHHHHHH---HHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEE
Confidence 6889999999999999864 44467778876633 23445666666553 344477777778877767899999
Q ss_pred eCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHH
Q psy1621 97 CNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIH 176 (224)
Q Consensus 97 ~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q 176 (224)
+.|+++|..+.=.|--.|.+++-+||.+++.+|...++.|+.+++++||||+++++|+||+++..||||.+|.+...|+|
T Consensus 433 v~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~H 512 (691)
T KOG0338|consen 433 VRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLH 512 (691)
T ss_pred EehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHH
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCcceEEEEeccccHHHHHHHHHH
Q psy1621 177 RIGRGGRFGRKGVAINFVTAEDKRTLKDTEQF 208 (224)
Q Consensus 177 ~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~ 208 (224)
|+||+.|.|+.|.++.|+-+++...++.+-+-
T Consensus 513 RVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 513 RVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred HhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999999999988775
No 31
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.6e-28 Score=212.48 Aligned_cols=182 Identities=23% Similarity=0.299 Sum_probs=142.4
Q ss_pred CcccccccccccHhhhhhhhhhHHHhhhh-hhhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHH
Q psy1621 25 ARIGAGFNADINVEACADVDVNAAELRRR-VLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKV 103 (224)
Q Consensus 25 ~~~~~~~sATi~~~~~~~~~~~~~~l~~~-~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~ 103 (224)
+...+.+|||-++.+.+.+.. .-.+..+ ..+.....+++........+...+...+.+ ......++.||||.|++.+
T Consensus 166 ~~p~~AlTATA~~~v~~DI~~-~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~ 243 (590)
T COG0514 166 NPPVLALTATATPRVRDDIRE-QLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKV 243 (590)
T ss_pred CCCEEEEeCCCChHHHHHHHH-HhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhH
Confidence 456778888888877655441 1122333 222333444444333332222224444443 2244567899999999999
Q ss_pred HHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccC
Q psy1621 104 DWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGR 183 (224)
Q Consensus 104 ~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R 183 (224)
+.++++|.+.|+.+..|||||+.++|..+.++|..+++.|+|||.++|+|||.|++++||||+.|.|+++|+|.+|||||
T Consensus 244 E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGR 323 (590)
T COG0514 244 EELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGR 323 (590)
T ss_pred HHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEeccccHHHHHHHHHH
Q psy1621 184 FGRKGVAINFVTAEDKRTLKDTEQF 208 (224)
Q Consensus 184 ~g~~~~~~~~~~~~~~~~~~~~~~~ 208 (224)
+|..+.|++++++.|......+.+.
T Consensus 324 DG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 324 DGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred CCCcceEEEeeccccHHHHHHHHHh
Confidence 9999999999999887766665554
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.96 E-value=5.1e-28 Score=219.15 Aligned_cols=189 Identities=19% Similarity=0.243 Sum_probs=145.4
Q ss_pred cCcccccccccccHhhhhhhhhhHHHhhhhhhhccC--cccceeEEEEEecC----------------CccHHHHHHHHh
Q psy1621 24 GARIGAGFNADINVEACADVDVNAAELRRRVLIVGD--SMTRIRQFYIYIER----------------EDWKFDTLCDLY 85 (224)
Q Consensus 24 ~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~--~~~~i~~~~~~~~~----------------~~~k~~~l~~ll 85 (224)
.+.|++++|||++.... .....+..+..+... .+....++....+. ...+...+..++
T Consensus 193 ~~~q~i~~SATi~n~~~----~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~ 268 (742)
T TIGR03817 193 ASPVFVLASATTADPAA----AASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLV 268 (742)
T ss_pred CCCEEEEEecCCCCHHH----HHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHH
Confidence 45799999999976532 222333344333221 12222222221111 112555666666
Q ss_pred ccCCCCcEEEEeCchHHHHHHHHHHHhC--------CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC
Q psy1621 86 GTLSITQAVIFCNTRRKVDWLTESMLKK--------EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQ 157 (224)
Q Consensus 86 ~~~~~~~~iIf~~t~~~~~~l~~~L~~~--------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~ 157 (224)
.. +.++||||+|++.++.+++.|++. +.++..+||++++++|.+++++|++|++++||||+++++|||+|
T Consensus 269 ~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~ 346 (742)
T TIGR03817 269 AE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDIS 346 (742)
T ss_pred HC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcc
Confidence 54 579999999999999999998763 56788999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEecc--ccHHHHHHHHHHhccccccCCc
Q psy1621 158 QVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTA--EDKRTLKDTEQFYNTRIEEMPM 218 (224)
Q Consensus 158 ~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 218 (224)
++++||+++.|.+..+|+||+||+||.|+.|.++++... .|...+..+++.++.+++....
T Consensus 347 ~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~~ 409 (742)
T TIGR03817 347 GLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATVF 409 (742)
T ss_pred cccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCcccee
Confidence 999999999999999999999999999999999998863 4677788888888887766543
No 33
>KOG0339|consensus
Probab=99.95 E-value=4e-28 Score=202.57 Aligned_cols=220 Identities=26% Similarity=0.366 Sum_probs=192.5
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhh----ccCcccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLI----VGDSMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i----~~~~~~~i~~~~~~~~~~~ 75 (224)
+||++-+|.-..--+..++.-+ ...+|+++||||++..+. .++++.|..|+.+ ++.....+.|.+..+.++.
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe---~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~ 452 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIE---KLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEE 452 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHH---HHHHHHhcCCeeEEEeehhccccchhheeeeccCcH
Confidence 4788777766555566666655 578999999999998874 5667888888876 3345678899999999888
Q ss_pred cHHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 76 WKFDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 76 ~k~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
.|+..|.+.|... ..+++|||+..+..++.++..|...++++..+||++.+.+|.+++..|+++...||++|++..+|+
T Consensus 453 ~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargl 532 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGL 532 (731)
T ss_pred HHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCC
Confidence 8999998877655 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q psy1621 155 DVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADL 223 (224)
Q Consensus 155 di~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 223 (224)
||+++..|++||.-.+.+.+.||+||.||.|..|.++.++++.|....-.+-+.+.--....|.++.+|
T Consensus 533 dI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 533 DIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred CccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 999999999999999999999999999999999999999999999988888888877777777766554
No 34
>KOG0344|consensus
Probab=99.95 E-value=5.2e-28 Score=204.91 Aligned_cols=217 Identities=32% Similarity=0.443 Sum_probs=179.1
Q ss_pred CcccceeecC-CCCccccccc--cCccCcccccccccccHhhhhhhhhhHHHh-hhhhhhccCcccceeEEEEEecCCcc
Q psy1621 1 MEELQMVCYP-PGHGACADVH--VNVGARIGAGFNADINVEACADVDVNAAEL-RRRVLIVGDSMTRIRQFYIYIEREDW 76 (224)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~sATi~~~~~~~~~~~~~~l-~~~~~i~~~~~~~i~~~~~~~~~~~~ 76 (224)
+||++|+..| -=..+..+++ +.+...-..+||||++.++..-.......+ +.++....+....+.|..+++..+..
T Consensus 294 ~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~ 373 (593)
T KOG0344|consen 294 VDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKG 373 (593)
T ss_pred echHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchh
Confidence 4788888877 2222222222 122445568899999988754444333332 22223344456788899999999888
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHH-HhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESM-LKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L-~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
|+.++.+++...-..+++||+.+.++|..++..| .-.++++.++||..++.+|...+++|+.|++++|+||+++++|+|
T Consensus 374 K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiD 453 (593)
T KOG0344|consen 374 KLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGID 453 (593)
T ss_pred HHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhcccc
Confidence 9999999999876789999999999999999999 666899999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMP 217 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (224)
+.+++.||+||.|.+..+|.+|+||+||.|+.|.++.|+++.+....+.+.+......-+.|
T Consensus 454 f~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evp 515 (593)
T KOG0344|consen 454 FKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVP 515 (593)
T ss_pred ccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcch
Confidence 99999999999999999999999999999999999999999999999999998876655555
No 35
>KOG0346|consensus
Probab=99.95 E-value=1.3e-27 Score=196.40 Aligned_cols=207 Identities=24% Similarity=0.334 Sum_probs=175.3
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhhc-----cCcccceeEEEEEecCC
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLIV-----GDSMTRIRQFYIYIERE 74 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~-----~~~~~~i~~~~~~~~~~ 74 (224)
|||++-++-..+--.-..+... |...|++++|||++.++.+ +....+.+|+.+. ...++.+.|+++.++.+
T Consensus 176 vDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~---LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~ 252 (569)
T KOG0346|consen 176 VDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQA---LKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEE 252 (569)
T ss_pred echhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHH---HHHHhccCCeEEEeccccCCCcccceEEEEEeccc
Confidence 6888876655555544444433 5778999999999998854 4447788888762 23457899999999965
Q ss_pred ccHHHHHHHHhc-cCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----
Q psy1621 75 DWKFDTLCDLYG-TLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD----- 148 (224)
Q Consensus 75 ~~k~~~l~~ll~-~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~----- 148 (224)
+ |+..++.+++ .+-.++.|||+||..+|..+.-.|.+.|++.++++|.++..-|..++++|+.|-..|+||||
T Consensus 253 D-KflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~ 331 (569)
T KOG0346|consen 253 D-KFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADG 331 (569)
T ss_pred h-hHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccch
Confidence 5 9999999887 44568999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------CcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEecccc
Q psy1621 149 ------------------------------LLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAED 198 (224)
Q Consensus 149 ------------------------------~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 198 (224)
-..+|||+.++.+|++||+|.+..+|+||+||++|.++.|.++.|+.+.+
T Consensus 332 ~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e 411 (569)
T KOG0346|consen 332 DKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKE 411 (569)
T ss_pred hhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchH
Confidence 24689999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcc
Q psy1621 199 KRTLKDTEQFYNT 211 (224)
Q Consensus 199 ~~~~~~~~~~~~~ 211 (224)
..-...+++.+..
T Consensus 412 ~~g~~~le~~~~d 424 (569)
T KOG0346|consen 412 EFGKESLESILKD 424 (569)
T ss_pred HhhhhHHHHHHhh
Confidence 7766667666544
No 36
>KOG0348|consensus
Probab=99.93 E-value=1.7e-25 Score=187.85 Aligned_cols=181 Identities=23% Similarity=0.381 Sum_probs=147.0
Q ss_pred cCcccccccccccHhhhhhhhhhHHHhhhhhhhc-----------------------------cCcccceeEEEEEecCC
Q psy1621 24 GARIGAGFNADINVEACADVDVNAAELRRRVLIV-----------------------------GDSMTRIRQFYIYIERE 74 (224)
Q Consensus 24 ~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~-----------------------------~~~~~~i~~~~~~~~~~ 74 (224)
.++|.+++|||+...|- .++...+.+|+.+. ...++.+.+.|..++..
T Consensus 330 ~q~q~mLlSATLtd~V~---rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK 406 (708)
T KOG0348|consen 330 HQLQNMLLSATLTDGVN---RLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK 406 (708)
T ss_pred HHHHhHhhhhhhHHHHH---HHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCc
Confidence 37899999999988764 23334444444332 12244566778888764
Q ss_pred ccHHHHHHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhC----------------------CCeEEEecCCCCHHH
Q psy1621 75 DWKFDTLCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKK----------------------EFTVSAMHGDMDQNA 128 (224)
Q Consensus 75 ~~k~~~l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~----------------------~~~~~~~~g~~~~~~ 128 (224)
- ++-.|..++.. ....++|||+.+.+.++.-+..|.+. +.++..+||+|++++
T Consensus 407 L-RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Qee 485 (708)
T KOG0348|consen 407 L-RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEE 485 (708)
T ss_pred h-hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHH
Confidence 4 55555555543 35678999999999999988877541 346899999999999
Q ss_pred HHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHH
Q psy1621 129 RDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQF 208 (224)
Q Consensus 129 r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~ 208 (224)
|..++..|...+..||+|||++++|+|+|++.+||.||+|.+..+|+||+||+.|.|..|.+++|+.+.+.+++..+.+.
T Consensus 486 Rts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 486 RTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999977777664
No 37
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.93 E-value=1e-24 Score=204.01 Aligned_cols=198 Identities=15% Similarity=0.148 Sum_probs=144.5
Q ss_pred CcccceeecCCCCccccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhccCccc--ceeEEEEEecCCccHH
Q psy1621 1 MEELQMVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMT--RIRQFYIYIEREDWKF 78 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~--~i~~~~~~~~~~~~k~ 78 (224)
+||.|+|=+ ..-..+..+ +...|++++|||..+... .+...+++.+..+..++.. .+.+++........+.
T Consensus 728 IDEahrfG~--~~~e~lk~l--~~~~qvLl~SATpiprtl---~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~ 800 (1147)
T PRK10689 728 VDEEHRFGV--RHKERIKAM--RADVDILTLTATPIPRTL---NMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE 800 (1147)
T ss_pred Eechhhcch--hHHHHHHhc--CCCCcEEEEcCCCCHHHH---HHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHH
Confidence 589998622 122222222 357899999999876653 4444566666555443322 3444443332211122
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 79 DTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 79 ~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
..+.++. .+++++||||+++.++.+++.|.+. +.++..+||+|++++|.+++.+|++|+.+|||||+++++|+|+
T Consensus 801 ~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDI 877 (1147)
T PRK10689 801 AILREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 (1147)
T ss_pred HHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccc
Confidence 3333332 3579999999999999999999887 6789999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCCC-CChhHHHHHHhhccCCCCcceEEEEeccc------cHHHHHHHHHH
Q psy1621 157 QQVSLVINYDLP-SNRENYIHRIGRGGRFGRKGVAINFVTAE------DKRTLKDTEQF 208 (224)
Q Consensus 157 ~~~~~vi~~~~p-~s~~~~~q~~GR~~R~g~~~~~~~~~~~~------~~~~~~~~~~~ 208 (224)
|++++||..+.. .+..+|.|++||+||.|+.|.|++++..+ ....++.+++.
T Consensus 878 P~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred ccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 999999966543 57789999999999999999999987543 34455555553
No 38
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.92 E-value=1.8e-24 Score=198.57 Aligned_cols=198 Identities=17% Similarity=0.191 Sum_probs=142.4
Q ss_pred CcccceeecCCCCccccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhccCccc--ceeEEEEEecCCccHH
Q psy1621 1 MEELQMVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMT--RIRQFYIYIEREDWKF 78 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~--~i~~~~~~~~~~~~k~ 78 (224)
+||.|.|-+ ..-..+..+ +.+.+.++||||..+... .+....++.+..+...+.. .+..++...+... -.
T Consensus 579 IDEahrfgv--~~~~~L~~~--~~~~~vL~~SATpiprtl---~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~-i~ 650 (926)
T TIGR00580 579 IDEEQRFGV--KQKEKLKEL--RTSVDVLTLSATPIPRTL---HMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPEL-VR 650 (926)
T ss_pred eecccccch--hHHHHHHhc--CCCCCEEEEecCCCHHHH---HHHHhcCCCcEEEecCCCCccceEEEEEecCHHH-HH
Confidence 589998522 122222222 346789999999766542 3333444454444333322 3444433222110 11
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 79 DTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 79 ~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
..+...+. .+++++|||++++.++.+++.|.+. +.++..+||+|++++|.+++++|++|+.+|||||+++++|+|+
T Consensus 651 ~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI 728 (926)
T TIGR00580 651 EAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDI 728 (926)
T ss_pred HHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccc
Confidence 22222222 4679999999999999999999885 6789999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCCCC-ChhHHHHHHhhccCCCCcceEEEEeccc------cHHHHHHHHHH
Q psy1621 157 QQVSLVINYDLPS-NRENYIHRIGRGGRFGRKGVAINFVTAE------DKRTLKDTEQF 208 (224)
Q Consensus 157 ~~~~~vi~~~~p~-s~~~~~q~~GR~~R~g~~~~~~~~~~~~------~~~~~~~~~~~ 208 (224)
|++++||+++.|. +..+|.|++||+||.|+.|.|++++... ..+.++.+++.
T Consensus 729 p~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 729 PNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred ccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 9999999999864 7889999999999999999999998543 44555555554
No 39
>KOG4284|consensus
Probab=99.92 E-value=3.8e-25 Score=189.29 Aligned_cols=195 Identities=27% Similarity=0.451 Sum_probs=168.9
Q ss_pred CcccceeecCCCCccccccccC--ccCcccccccccccHhhhhhhhhhHHHhhhhhhhcc----CcccceeEEEEEecCC
Q psy1621 1 MEELQMVCYPPGHGACADVHVN--VGARIGAGFNADINVEACADVDVNAAELRRRVLIVG----DSMTRIRQFYIYIERE 74 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~----~~~~~i~~~~~~~~~~ 74 (224)
+||++-|+.-...-.-.+++.+ |..+|.+.+|||-|......+. .+++.|..+.. ...-.+.+++......
T Consensus 173 LDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Ls---k~mrdp~lVr~n~~d~~L~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 173 LDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLS---KFMRDPALVRFNADDVQLFGIKQYVVAKCSP 249 (980)
T ss_pred eccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHH---HHhcccceeecccCCceeechhheeeeccCC
Confidence 4788888886666666666653 6789999999999987654443 77888887733 3445788888776543
Q ss_pred -------ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy1621 75 -------DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITT 147 (224)
Q Consensus 75 -------~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t 147 (224)
..|+..|.++++.++..+.||||+....|+-++.+|...|+.+.++.|.|++.+|..+.+.++.-..+|||+|
T Consensus 250 nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 2388899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEecccc
Q psy1621 148 DLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAED 198 (224)
Q Consensus 148 ~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 198 (224)
+.-.+|||-++++.||++|.|.+.+.|.||+|||||.|..|.++.|+....
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred chhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 999999999999999999999999999999999999999999988887653
No 40
>KOG0347|consensus
Probab=99.92 E-value=1.3e-26 Score=195.08 Aligned_cols=123 Identities=30% Similarity=0.487 Sum_probs=119.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPS 169 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~ 169 (224)
++++|||||+...+..++-+|...++....+|+.|.+..|.+.+++|++....||+||+++++|+|||++.|||||..|.
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPr 542 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPR 542 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccc
Q psy1621 170 NRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTR 212 (224)
Q Consensus 170 s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (224)
+.+.|.||.||++|.+..|..++++.+.+...++++++-+...
T Consensus 543 tseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 543 TSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred ccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999988643
No 41
>KOG0334|consensus
Probab=99.92 E-value=2.8e-24 Score=192.39 Aligned_cols=214 Identities=28% Similarity=0.444 Sum_probs=179.3
Q ss_pred Ccccc----eeecCCCCccccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhcc----CcccceeEEEEEec
Q psy1621 1 MEELQ----MVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVG----DSMTRIRQFYIYIE 72 (224)
Q Consensus 1 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~----~~~~~i~~~~~~~~ 72 (224)
|||++ |--.|+..- ++..+ ...+|+.+||||.|..+. .++..-+..|+.+.. .....+.+.+..+.
T Consensus 521 ~deaDrmfdmgfePq~~~-Ii~nl--rpdrQtvlfSatfpr~m~---~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~ 594 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITR-ILQNL--RPDRQTVLFSATFPRSME---ALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCA 594 (997)
T ss_pred echhhhhheeccCcccch-HHhhc--chhhhhhhhhhhhhHHHH---HHHHHhhcCCeeEEEccceeEeccceEEEEEec
Confidence 45554 333444444 44444 568999999999999853 445555666665422 34467888888888
Q ss_pred CCccHHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q psy1621 73 REDWKFDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151 (224)
Q Consensus 73 ~~~~k~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~ 151 (224)
.+..|+..|.+++.+. ...++||||.+...|+.+.+.|.+.++.+..+||+.++.+|..++++|+++...+|++|+++.
T Consensus 595 ~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvva 674 (997)
T KOG0334|consen 595 IENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVA 674 (997)
T ss_pred CchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhh
Confidence 6667999999999765 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcch
Q psy1621 152 RGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNV 220 (224)
Q Consensus 152 ~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (224)
+|+|++++..||+|+.|...+.|.+|+||+||.|..|.++.|+++++......+++.+...-...|..+
T Consensus 675 rGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l 743 (997)
T KOG0334|consen 675 RGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLL 743 (997)
T ss_pred cccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHH
Confidence 999999999999999999999999999999999999999999999999999999999965555555443
No 42
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.91 E-value=5.3e-24 Score=189.73 Aligned_cols=197 Identities=15% Similarity=0.224 Sum_probs=141.2
Q ss_pred CcccceeecCCCCccccccccC--ccCcccccccccccHhhhhhhhhhHHHhhhhhhh--ccCcccceeEEEEEecC---
Q psy1621 1 MEELQMVCYPPGHGACADVHVN--VGARIGAGFNADINVEACADVDVNAAELRRRVLI--VGDSMTRIRQFYIYIER--- 73 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i--~~~~~~~i~~~~~~~~~--- 73 (224)
+||++-+..-. ..+++.+-. +..+|+++||||++.++.. + ..++..+..+ .+.+...++++|.....
T Consensus 297 IDEaHEr~~~~--DllL~llk~~~~~~rq~ILmSATl~~dv~~---l-~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~ 370 (675)
T PHA02653 297 IDEVHEHDQIG--DIIIAVARKHIDKIRSLFLMTATLEDDRDR---I-KEFFPNPAFVHIPGGTLFPISEVYVKNKYNPK 370 (675)
T ss_pred ccccccCccch--hHHHHHHHHhhhhcCEEEEEccCCcHhHHH---H-HHHhcCCcEEEeCCCcCCCeEEEEeecCcccc
Confidence 57887754322 233333311 2336899999999877532 2 2555555443 23334567777654321
Q ss_pred ------CccHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHh-hcCCce
Q psy1621 74 ------EDWKFDTLCDLYGT--LSITQAVIFCNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQF-RSGSSR 142 (224)
Q Consensus 74 ------~~~k~~~l~~ll~~--~~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f-~~~~~~ 142 (224)
+..+...+..+... ..++++|||++++++++.+++.|.+. ++.+..+||++++. ++.+++| ++|+.+
T Consensus 371 ~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~k 448 (675)
T PHA02653 371 NKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPS 448 (675)
T ss_pred cchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCcee
Confidence 11132233332221 23568999999999999999999887 68999999999975 4667777 689999
Q ss_pred EEEEcCCcccCCCCCCCCEEEEeC---CCC---------ChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHH
Q psy1621 143 VLITTDLLARGIDVQQVSLVINYD---LPS---------NRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTE 206 (224)
Q Consensus 143 ilv~t~~~~~Gvdi~~~~~vi~~~---~p~---------s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 206 (224)
|||||+++++|+|+|++++||++| .|. |.++|.||+||+||. +.|.|+.++++.+....+++.
T Consensus 449 ILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 449 IIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred EEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 999999999999999999999998 554 888999999999999 799999999988765555554
No 43
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.91 E-value=3.6e-24 Score=180.48 Aligned_cols=190 Identities=15% Similarity=0.150 Sum_probs=129.5
Q ss_pred CcccceeecCCCCcccccc---ccCccCcccccccccccHhhhhhhhhhHHHhhhhhh--hccCcccce-eEEEEEe-cC
Q psy1621 1 MEELQMVCYPPGHGACADV---HVNVGARIGAGFNADINVEACADVDVNAAELRRRVL--IVGDSMTRI-RQFYIYI-ER 73 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~--i~~~~~~~i-~~~~~~~-~~ 73 (224)
+||++++.... .+..... ++ ....|.+++|||+|..+.+... .....+.. ......... .+.+... ..
T Consensus 130 iDE~h~~~~~~-~~~l~~~l~~l~-~~~~~~i~~SATlp~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (358)
T TIGR01587 130 FDEVHFYDEYT-LALILAVLEVLK-DNDVPILLMSATLPKFLKEYAE---KIGYVEFNEPLDLKEERRFERHRFIKIESD 204 (358)
T ss_pred EeCCCCCCHHH-HHHHHHHHHHHH-HcCCCEEEEecCchHHHHHHHh---cCCCcccccCCCCccccccccccceeeccc
Confidence 58999876532 2223332 23 3567899999999865432221 11111000 000110111 2222222 22
Q ss_pred CccHHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCC--eEEEecCCCCHHHHHH----HHHHhhcCCceEEEE
Q psy1621 74 EDWKFDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEF--TVSAMHGDMDQNARDV----IMRQFRSGSSRVLIT 146 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~--~~~~~~g~~~~~~r~~----~~~~f~~~~~~ilv~ 146 (224)
...+...+.+++... .++++||||+|++.++.+++.|++.+. .+..+||++++.+|.+ +++.|++++..||||
T Consensus 205 ~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilva 284 (358)
T TIGR01587 205 KVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVA 284 (358)
T ss_pred cccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 223666666666543 568999999999999999999988765 5999999999999976 488999999999999
Q ss_pred cCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCc----ceEEEEecccc
Q psy1621 147 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRK----GVAINFVTAED 198 (224)
Q Consensus 147 t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~----~~~~~~~~~~~ 198 (224)
|+++++|+|++ ++.++++..| +.+|.||+||+||.|+. |.++++...++
T Consensus 285 T~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 285 TQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred CcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 99999999995 7888887655 78999999999998853 36777766543
No 44
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.90 E-value=3.4e-23 Score=191.11 Aligned_cols=107 Identities=23% Similarity=0.378 Sum_probs=96.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC------CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEE
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK------EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI 163 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi 163 (224)
++++||||||++.|+.++..|.+. +..+..+||++++++|..+++.|++|+++|||||+.+++|||+|++++||
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI 363 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVV 363 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEE
Confidence 578999999999999999999873 46799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChhHHHHHHhhccCCC-CcceEEEEecc
Q psy1621 164 NYDLPSNRENYIHRIGRGGRFG-RKGVAINFVTA 196 (224)
Q Consensus 164 ~~~~p~s~~~~~q~~GR~~R~g-~~~~~~~~~~~ 196 (224)
+++.|.+..+|.||+||+||.+ ..+.++++...
T Consensus 364 ~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 364 LLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred EeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999874 44445444443
No 45
>KOG0337|consensus
Probab=99.90 E-value=3.1e-24 Score=175.80 Aligned_cols=192 Identities=27% Similarity=0.403 Sum_probs=171.4
Q ss_pred ccCcccccccccccHhhhhhhhhhHHHhhhhhhhc----cCcccceeEEEEEecCCccHHHHHHHHhccC-CCCcEEEEe
Q psy1621 23 VGARIGAGFNADINVEACADVDVNAAELRRRVLIV----GDSMTRIRQFYIYIEREDWKFDTLCDLYGTL-SITQAVIFC 97 (224)
Q Consensus 23 ~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~----~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iIf~ 97 (224)
+..+|+++||||.|... +++++.++..|+.+. ....+.++..+..+..++ |..+|+.++... ..++++||+
T Consensus 193 ~~~~QTllfSatlp~~l---v~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~-K~aaLl~il~~~~~~~~t~vf~ 268 (529)
T KOG0337|consen 193 PESRQTLLFSATLPRDL---VDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE-KEAALLSILGGRIKDKQTIVFV 268 (529)
T ss_pred CCcceEEEEeccCchhh---HHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH-HHHHHHHHHhccccccceeEEe
Confidence 34569999999999875 578889999998875 334456666777777666 999999998765 557899999
Q ss_pred CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHH
Q psy1621 98 NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHR 177 (224)
Q Consensus 98 ~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~ 177 (224)
.|+..++.+...|+..++.+..++|.+++..|..-+.+|..++..++|.|+++.+|+|||..+.||+||.|.+...|.+|
T Consensus 269 ~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhR 348 (529)
T KOG0337|consen 269 ATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHR 348 (529)
T ss_pred cccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q psy1621 178 IGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPM 218 (224)
Q Consensus 178 ~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (224)
+||+.|.|+.|.+|.++...+..++-.+..+++.++.....
T Consensus 349 Vgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~ 389 (529)
T KOG0337|consen 349 VGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAIS 389 (529)
T ss_pred ecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccc
Confidence 99999999999999999999999999999999988765543
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=5.7e-23 Score=185.38 Aligned_cols=108 Identities=20% Similarity=0.358 Sum_probs=97.3
Q ss_pred CCCcEEEEeCch--------HHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC
Q psy1621 89 SITQAVIFCNTR--------RKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQ 158 (224)
Q Consensus 89 ~~~~~iIf~~t~--------~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~ 158 (224)
.+.+++|||++. ..++.+++.|.+. +.++..+||+|++++|..++++|++|+.+|||||+++++|+|+|+
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~ 549 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPN 549 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCC
Confidence 567999999854 4566778888765 468999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCC-ChhHHHHHHhhccCCCCcceEEEEecc
Q psy1621 159 VSLVINYDLPS-NRENYIHRIGRGGRFGRKGVAINFVTA 196 (224)
Q Consensus 159 ~~~vi~~~~p~-s~~~~~q~~GR~~R~g~~~~~~~~~~~ 196 (224)
+++||+++.|. ...++.|++||+||.|..|.|++++..
T Consensus 550 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 550 ATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred CcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 99999999986 678899999999999999999999953
No 47
>KOG0350|consensus
Probab=99.90 E-value=2.6e-23 Score=173.53 Aligned_cols=183 Identities=26% Similarity=0.382 Sum_probs=149.8
Q ss_pred CcccccccccccHhhhhhhhhhHHHhhhhh--------hhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEE
Q psy1621 25 ARIGAGFNADINVEACADVDVNAAELRRRV--------LIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIF 96 (224)
Q Consensus 25 ~~~~~~~sATi~~~~~~~~~~~~~~l~~~~--------~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf 96 (224)
..+.+.+|||+...-.. +...-+..|. ...-+.+..+.+.++.++... |.-.+..++...+..++|+|
T Consensus 360 ~l~kL~~satLsqdP~K---l~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~-kpl~~~~lI~~~k~~r~lcf 435 (620)
T KOG0350|consen 360 PLWKLVFSATLSQDPSK---LKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKF-KPLAVYALITSNKLNRTLCF 435 (620)
T ss_pred hhHhhhcchhhhcChHH---HhhhhcCCCceEEeecccceeeecChhhhhceeeccccc-chHhHHHHHHHhhcceEEEE
Confidence 34578888888543221 1112223331 123344566777777776544 88888888888888999999
Q ss_pred eCchHHHHHHHHHHH----hCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChh
Q psy1621 97 CNTRRKVDWLTESML----KKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRE 172 (224)
Q Consensus 97 ~~t~~~~~~l~~~L~----~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~ 172 (224)
+++.+.+..++..|. +...++-.+.|+++...|.+.++.|..|++++||||+++.+|+|+-++++||+||+|.+..
T Consensus 436 ~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~k 515 (620)
T KOG0350|consen 436 VNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDK 515 (620)
T ss_pred ecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhh
Confidence 999999999999886 2356677799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhcc
Q psy1621 173 NYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNT 211 (224)
Q Consensus 173 ~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (224)
+|.||+||++|.|+.|.|+.++...+...+.++-+..+.
T Consensus 516 tyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 516 TYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred HHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999999999999999888888887665
No 48
>PRK02362 ski2-like helicase; Provisional
Probab=99.90 E-value=7.7e-23 Score=186.52 Aligned_cols=119 Identities=22% Similarity=0.375 Sum_probs=101.4
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC------------------------------------CCeEEEe
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK------------------------------------EFTVSAM 120 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~------------------------------------~~~~~~~ 120 (224)
....+.+.+. .++++||||+|++.|+.+++.|.+. ..+++++
T Consensus 232 ~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~h 309 (737)
T PRK02362 232 TLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFH 309 (737)
T ss_pred HHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEee
Confidence 3344444443 4679999999999999998887643 1368999
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE----eC-----CCCChhHHHHHHhhccCCCCc--ce
Q psy1621 121 HGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-----LPSNRENYIHRIGRGGRFGRK--GV 189 (224)
Q Consensus 121 ~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~----~~-----~p~s~~~~~q~~GR~~R~g~~--~~ 189 (224)
||++++++|..+++.|++|.++|||||+++++|+|+|..++||+ |+ .|.+..+|.||+|||||.|.+ |.
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~ 389 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGE 389 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999986 65 588999999999999999864 88
Q ss_pred EEEEeccc
Q psy1621 190 AINFVTAE 197 (224)
Q Consensus 190 ~~~~~~~~ 197 (224)
+++++...
T Consensus 390 ~ii~~~~~ 397 (737)
T PRK02362 390 AVLLAKSY 397 (737)
T ss_pred EEEEecCc
Confidence 88888654
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.90 E-value=7.7e-23 Score=183.31 Aligned_cols=107 Identities=21% Similarity=0.376 Sum_probs=96.9
Q ss_pred CCCcEEEEeCch--------HHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC
Q psy1621 89 SITQAVIFCNTR--------RKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQ 158 (224)
Q Consensus 89 ~~~~~iIf~~t~--------~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~ 158 (224)
.+.+++|||++. +.++.+++.|.+. +..+..+||+|++++|..++++|++|+.+|||||+++++|+|+|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 467899999865 4566777777654 678999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCC-ChhHHHHHHhhccCCCCcceEEEEec
Q psy1621 159 VSLVINYDLPS-NRENYIHRIGRGGRFGRKGVAINFVT 195 (224)
Q Consensus 159 ~~~vi~~~~p~-s~~~~~q~~GR~~R~g~~~~~~~~~~ 195 (224)
+++||+++.|. +..++.|++||+||.|..|.|++++.
T Consensus 527 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 527 ATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999986 68899999999999999999999983
No 50
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.90 E-value=4e-23 Score=187.92 Aligned_cols=191 Identities=14% Similarity=0.270 Sum_probs=139.2
Q ss_pred CcccceeecCCCC--cccccccc-CccCcccccccccccHhhhhhhhhhHHHhhh-hhhhccCcccceeEEEEEecCCcc
Q psy1621 1 MEELQMVCYPPGH--GACADVHV-NVGARIGAGFNADINVEACADVDVNAAELRR-RVLIVGDSMTRIRQFYIYIEREDW 76 (224)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~-~~~i~~~~~~~i~~~~~~~~~~~~ 76 (224)
+||++.+...... +-+..+.. .+...+.++||||++.+..+ .++.. +++........++++|......+
T Consensus 119 iDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l~------~~l~~~~vI~~~gr~~pVe~~y~~~~~~~- 191 (819)
T TIGR01970 119 FDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLS------SLLPDAPVVESEGRSFPVEIRYLPLRGDQ- 191 (819)
T ss_pred EeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHHH------HHcCCCcEEEecCcceeeeeEEeecchhh-
Confidence 5788854333221 12222221 13467899999999876421 33332 22222222234666666554433
Q ss_pred HH-----HHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 77 KF-----DTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLK---KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 77 k~-----~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
++ ..+..++.. ..+++|||+++.++++.+++.|.+ .++.+..+||++++++|.++++.|++|+.+|+|||+
T Consensus 192 ~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn 270 (819)
T TIGR01970 192 RLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN 270 (819)
T ss_pred hHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc
Confidence 32 233444433 357899999999999999999987 378899999999999999999999999999999999
Q ss_pred CcccCCCCCCCCEEEEeCCCC------------------ChhHHHHHHhhccCCCCcceEEEEeccccHH
Q psy1621 149 LLARGIDVQQVSLVINYDLPS------------------NRENYIHRIGRGGRFGRKGVAINFVTAEDKR 200 (224)
Q Consensus 149 ~~~~Gvdi~~~~~vi~~~~p~------------------s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 200 (224)
++++|||||++++||+++.|. |..++.||+||+||. ..|.|+.++++.+..
T Consensus 271 IAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 271 IAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred hHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 999999999999999999874 345689999999998 799999999876543
No 51
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.90 E-value=9.7e-23 Score=186.86 Aligned_cols=137 Identities=20% Similarity=0.305 Sum_probs=121.5
Q ss_pred ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHH-hCCCeEEEecCCCCHHHHHHHHHHhhcC--CceEEEEcCCcc
Q psy1621 75 DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESML-KKEFTVSAMHGDMDQNARDVIMRQFRSG--SSRVLITTDLLA 151 (224)
Q Consensus 75 ~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~-~~~~~~~~~~g~~~~~~r~~~~~~f~~~--~~~ilv~t~~~~ 151 (224)
+.|.+.|.++++...+.++||||+++.++..+++.|+ +.|+++..+||+|+..+|.++++.|+++ ...|||||++++
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 4588899999988878999999999999999999994 5699999999999999999999999984 589999999999
Q ss_pred cCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhcc
Q psy1621 152 RGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNT 211 (224)
Q Consensus 152 ~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (224)
+|+|++.+++||+||.||++..|.||+||++|.|+.+.+.+++...+...-..+.+.+..
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999887777666555555556665544
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.89 E-value=1.3e-22 Score=191.62 Aligned_cols=127 Identities=24% Similarity=0.377 Sum_probs=102.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCC---------------------------------CeEEEecCCCCHHHHHHHHHH
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKE---------------------------------FTVSAMHGDMDQNARDVIMRQ 135 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~---------------------------------~~~~~~~g~~~~~~r~~~~~~ 135 (224)
.+.++||||||++.|+.++..|.+.. ..+..|||++++++|..+++.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 45789999999999999999997641 125789999999999999999
Q ss_pred hhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCC-CcceEEEEecccc--HHHHHHHHHHhccc
Q psy1621 136 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFG-RKGVAINFVTAED--KRTLKDTEQFYNTR 212 (224)
Q Consensus 136 f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g-~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 212 (224)
|++|++++||||+.+++|||++++++||+++.|.+..+|+||+||+||.. ..+.++++....+ .+...-++..+...
T Consensus 323 fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~ve~~l~g~ 402 (1490)
T PRK09751 323 LKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVECMFAGR 402 (1490)
T ss_pred HHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999963 3455554443321 11122355666555
Q ss_pred ccc
Q psy1621 213 IEE 215 (224)
Q Consensus 213 ~~~ 215 (224)
++.
T Consensus 403 iE~ 405 (1490)
T PRK09751 403 LEN 405 (1490)
T ss_pred CCc
Confidence 554
No 53
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.89 E-value=2.6e-22 Score=145.08 Aligned_cols=118 Identities=42% Similarity=0.727 Sum_probs=110.5
Q ss_pred cHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 76 WKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 76 ~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
.|...+.+++... .++++||||+++..++.+++.|.+.+..+..+||+++..+|..+++.|+++...++++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5888888888765 47899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEE
Q psy1621 154 IDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINF 193 (224)
Q Consensus 154 vdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~ 193 (224)
+|+|++++|++++.|++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887653
No 54
>KOG0351|consensus
Probab=99.89 E-value=1.3e-22 Score=184.79 Aligned_cols=179 Identities=19% Similarity=0.274 Sum_probs=138.9
Q ss_pred cccccccccccHhhhhhhhhhHHHhhhhhhhccC-cccceeEEEEEecCC-ccHHHHHHHHhc-cCCCCcEEEEeCchHH
Q psy1621 26 RIGAGFNADINVEACADVDVNAAELRRRVLIVGD-SMTRIRQFYIYIERE-DWKFDTLCDLYG-TLSITQAVIFCNTRRK 102 (224)
Q Consensus 26 ~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~-~~~~i~~~~~~~~~~-~~k~~~l~~ll~-~~~~~~~iIf~~t~~~ 102 (224)
..++-+|||.++.+...+-. .-.++++.....+ ..+++. |.+.... ......+....+ ..+.+.+||||.++++
T Consensus 421 vP~iALTATAT~~v~~DIi~-~L~l~~~~~~~~sfnR~NL~--yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ 497 (941)
T KOG0351|consen 421 VPFIALTATATERVREDVIR-SLGLRNPELFKSSFNRPNLK--YEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKE 497 (941)
T ss_pred CCeEEeehhccHHHHHHHHH-HhCCCCcceecccCCCCCce--EEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcch
Confidence 56677888876665543331 1223344333222 333333 3333332 213333333333 4477899999999999
Q ss_pred HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhcc
Q psy1621 103 VDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGG 182 (224)
Q Consensus 103 ~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~ 182 (224)
|+.++..|+..++.+..||+||++.+|..+.++|.+++++|+|||=++|+|+|.|+++.||||..|.|.+.|+|.+||||
T Consensus 498 ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAG 577 (941)
T KOG0351|consen 498 CEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAG 577 (941)
T ss_pred HHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEeccccHHHHHHHHH
Q psy1621 183 RFGRKGVAINFVTAEDKRTLKDTEQ 207 (224)
Q Consensus 183 R~g~~~~~~~~~~~~~~~~~~~~~~ 207 (224)
|+|....|++|+...|...++.+-.
T Consensus 578 RDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 578 RDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred cCCCcceeEEecchhHHHHHHHHHH
Confidence 9999999999999887777665544
No 55
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.1e-22 Score=177.53 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=125.6
Q ss_pred ccccccccHhhhhhhhhhHHHhhhhhhhccCc--ccceeEEEEEecCCccHHHHHHHHhccC--CCCcEEEEeCchHHHH
Q psy1621 29 AGFNADINVEACADVDVNAAELRRRVLIVGDS--MTRIRQFYIYIEREDWKFDTLCDLYGTL--SITQAVIFCNTRRKVD 104 (224)
Q Consensus 29 ~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~--~~~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~ 104 (224)
..||+|...+.. ++...+.-.++.+.... .....+.+++++. ..|...|.+++... .+.++||||+|++.++
T Consensus 412 ~GmTGTa~~~~~---El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~-~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 412 AGMTGTAREVAG---ELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTA-AAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred hcccCcChHHHH---HHHHHHCCCeEEeCCCCCccceecCCEEEeCH-HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 568999876532 22223333333332221 1223334555554 44999999988764 4678999999999999
Q ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC---CCC-----EEEEeCCCCChhHHHH
Q psy1621 105 WLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQ---QVS-----LVINYDLPSNRENYIH 176 (224)
Q Consensus 105 ~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~---~~~-----~vi~~~~p~s~~~~~q 176 (224)
.+++.|.+.++.+..+||+++..++. +..++.++..|+|||+++++|+||+ ++. +||+++.|.|...|.|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~~rE~~--ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQDAEEAA--IVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcHHHHHH--HHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 99999999999999999997655544 4555555567999999999999999 565 9999999999999999
Q ss_pred HHhhccCCCCcceEEEEecccc
Q psy1621 177 RIGRGGRFGRKGVAINFVTAED 198 (224)
Q Consensus 177 ~~GR~~R~g~~~~~~~~~~~~~ 198 (224)
++||+||.|+.|.++.+++..|
T Consensus 566 r~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred hcccccCCCCCeEEEEEechhH
Confidence 9999999999999999998755
No 56
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.89 E-value=1e-22 Score=183.20 Aligned_cols=153 Identities=19% Similarity=0.224 Sum_probs=110.6
Q ss_pred cccccccccccHhhhhhhhhhHHHhhhhhhh----ccCcccceeEEEEEecCCccHHHHHHHHhc---cCCCCcEEEEeC
Q psy1621 26 RIGAGFNADINVEACADVDVNAAELRRRVLI----VGDSMTRIRQFYIYIEREDWKFDTLCDLYG---TLSITQAVIFCN 98 (224)
Q Consensus 26 ~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i----~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~---~~~~~~~iIf~~ 98 (224)
+|+++||||++.++... ....+..+..+ ......++.++ ..++.+ .|...+...+. ...++++|||||
T Consensus 206 rQtLLFSAT~p~ei~~l---~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e-~Kl~~lv~~L~~ll~e~g~~vLVF~N 280 (844)
T TIGR02621 206 LRVVELTATSRTDGPDR---TTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDE-KFLSTMVKELNLLMKDSGGAILVFCR 280 (844)
T ss_pred ceEEEEecCCCccHHHH---HHHHccCCceeecccccccccceEEE-EecChH-HHHHHHHHHHHHHHhhCCCcEEEEEC
Confidence 69999999998765422 12222222211 11223344443 333332 25544333221 224678999999
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHH-----HHHHHhhc----CC-------ceEEEEcCCcccCCCCCCCCEE
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARD-----VIMRQFRS----GS-------SRVLITTDLLARGIDVQQVSLV 162 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~-----~~~~~f~~----~~-------~~ilv~t~~~~~Gvdi~~~~~v 162 (224)
|++.|+.+++.|.+.++ ..+||.|++.+|. +++++|++ ++ ..|||||+++++|+||+. ++|
T Consensus 281 Tv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~V 357 (844)
T TIGR02621 281 TVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHL 357 (844)
T ss_pred CHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceE
Confidence 99999999999998876 8999999999999 78999987 43 679999999999999986 888
Q ss_pred EEeCCCCChhHHHHHHhhccCCCCcc
Q psy1621 163 INYDLPSNRENYIHRIGRGGRFGRKG 188 (224)
Q Consensus 163 i~~~~p~s~~~~~q~~GR~~R~g~~~ 188 (224)
|++..| .++|+||+||+||.|+.+
T Consensus 358 I~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 358 VCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred EECCCC--HHHHHHHhcccCCCCCCC
Confidence 887766 589999999999999753
No 57
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.88 E-value=4.4e-22 Score=185.45 Aligned_cols=192 Identities=15% Similarity=0.198 Sum_probs=137.8
Q ss_pred CcccceeecCCC--CccccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCc---
Q psy1621 1 MEELQMVCYPPG--HGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIERED--- 75 (224)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~--- 75 (224)
+||++.+..... .|.+...++.....|.+++|||++.+. +...+...|+.........++.+|......+
T Consensus 192 IDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~e~-----fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~ 266 (1294)
T PRK11131 192 IDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPER-----FSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDT 266 (1294)
T ss_pred ecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCHHH-----HHHHcCCCCEEEEcCccccceEEEeecccccchh
Confidence 588885433222 133445566656789999999998652 2223333443322222234666666553321
Q ss_pred --cHHHHHHHHhc---cCCCCcEEEEeCchHHHHHHHHHHHhCCCe---EEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy1621 76 --WKFDTLCDLYG---TLSITQAVIFCNTRRKVDWLTESMLKKEFT---VSAMHGDMDQNARDVIMRQFRSGSSRVLITT 147 (224)
Q Consensus 76 --~k~~~l~~ll~---~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~---~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t 147 (224)
..+..+...+. ....+.+|||+++..+++.+++.|.+.+++ +..+||++++++|.++++. .|..+|++||
T Consensus 267 ~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVAT 344 (1294)
T PRK11131 267 ERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLAT 344 (1294)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEec
Confidence 12333333322 235678999999999999999999987654 7789999999999999886 4778999999
Q ss_pred CCcccCCCCCCCCEEEEeCC---------------C---CChhHHHHHHhhccCCCCcceEEEEeccccHH
Q psy1621 148 DLLARGIDVQQVSLVINYDL---------------P---SNRENYIHRIGRGGRFGRKGVAINFVTAEDKR 200 (224)
Q Consensus 148 ~~~~~Gvdi~~~~~vi~~~~---------------p---~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 200 (224)
+++++|+|+|++++||++|. | .|.++|.||+||+||. ..|.|+.++++.+..
T Consensus 345 NIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 345 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 99999999999999999862 3 4568899999999998 799999999876543
No 58
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.87 E-value=4.8e-22 Score=181.14 Aligned_cols=169 Identities=14% Similarity=0.276 Sum_probs=130.7
Q ss_pred ccCcccccccccccHhhhhhhhhhHHHhhhhhhh-ccCcccceeEEEEEecCCccHHH-----HHHHHhccCCCCcEEEE
Q psy1621 23 VGARIGAGFNADINVEACADVDVNAAELRRRVLI-VGDSMTRIRQFYIYIEREDWKFD-----TLCDLYGTLSITQAVIF 96 (224)
Q Consensus 23 ~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i-~~~~~~~i~~~~~~~~~~~~k~~-----~l~~ll~~~~~~~~iIf 96 (224)
+...+.++||||++.+..+ .++..+..+ .......++++|...+..+ +.. .+..++.. ..+.+|||
T Consensus 147 r~~lqlilmSATl~~~~l~------~~~~~~~~I~~~gr~~pV~~~y~~~~~~~-~~~~~v~~~l~~~l~~-~~g~iLVF 218 (812)
T PRK11664 147 RDDLKLLIMSATLDNDRLQ------QLLPDAPVIVSEGRSFPVERRYQPLPAHQ-RFDEAVARATAELLRQ-ESGSLLLF 218 (812)
T ss_pred CccceEEEEecCCCHHHHH------HhcCCCCEEEecCccccceEEeccCchhh-hHHHHHHHHHHHHHHh-CCCCEEEE
Confidence 3457899999999876321 333322222 2222234667776665443 432 33444433 35889999
Q ss_pred eCchHHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCC----
Q psy1621 97 CNTRRKVDWLTESMLK---KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPS---- 169 (224)
Q Consensus 97 ~~t~~~~~~l~~~L~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~---- 169 (224)
++++++++.+++.|.+ .++.+..+||+++.++|.++++.|++|+.+|+|||+++++|+|||++++||+++.+.
T Consensus 219 lpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~y 298 (812)
T PRK11664 219 LPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARF 298 (812)
T ss_pred cCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccc
Confidence 9999999999999987 477899999999999999999999999999999999999999999999999988764
Q ss_pred --------------ChhHHHHHHhhccCCCCcceEEEEeccccHH
Q psy1621 170 --------------NRENYIHRIGRGGRFGRKGVAINFVTAEDKR 200 (224)
Q Consensus 170 --------------s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 200 (224)
|.+++.||+||+||. ..|.|+.++++.+..
T Consensus 299 d~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 299 DPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred cccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 346899999999998 699999999876543
No 59
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.4e-21 Score=162.50 Aligned_cols=123 Identities=28% Similarity=0.419 Sum_probs=110.6
Q ss_pred CccHHHHHHHHhccC----CCCcEEEEeCchHHHHHHHHHHHhCCCeEE-Eec--------CCCCHHHHHHHHHHhhcCC
Q psy1621 74 EDWKFDTLCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKKEFTVS-AMH--------GDMDQNARDVIMRQFRSGS 140 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~-~~~--------g~~~~~~r~~~~~~f~~~~ 140 (224)
+..|++.+.+++++. +..++|||++.+.+++.+.+.|.+.+..+. .+. .||++.+..+++++|+.|+
T Consensus 346 ~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge 425 (542)
T COG1111 346 EHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGE 425 (542)
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCC
Confidence 344888888888653 567999999999999999999999987764 333 4799999999999999999
Q ss_pred ceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccc
Q psy1621 141 SRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 141 ~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~ 197 (224)
.++||||+++++|+|||+++.||+|++..|+..+.||.||+||. +.|.++++++.+
T Consensus 426 ~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 426 YNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred ceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 99999999999999999999999999999999999999999997 889999998886
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.87 E-value=2.6e-22 Score=170.25 Aligned_cols=169 Identities=18% Similarity=0.288 Sum_probs=136.0
Q ss_pred Ccccccccccc-cHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccC--------CCCcEEE
Q psy1621 25 ARIGAGFNADI-NVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTL--------SITQAVI 95 (224)
Q Consensus 25 ~~~~~~~sATi-~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~--------~~~~~iI 95 (224)
..|.+.+|||+ +|+- ++ ..+.-..+....-+-.++.+.+++.++..|.+.+.++.+.. -.+++||
T Consensus 372 ~AQ~i~LSATVgNp~e-----lA-~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIV 445 (830)
T COG1202 372 GAQFIYLSATVGNPEE-----LA-KKLGAKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIV 445 (830)
T ss_pred CCeEEEEEeecCChHH-----HH-HHhCCeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEE
Confidence 67999999998 4431 22 22222222223333356677788887777999999988643 2479999
Q ss_pred EeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEE----EeCCCCCh
Q psy1621 96 FCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI----NYDLPSNR 171 (224)
Q Consensus 96 f~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi----~~~~p~s~ 171 (224)
|++|++.|..++..|...|+++.+||+|++..+|+++...|.++++.++|+|-+++.|+|+|.-..|+ .-.-+-|+
T Consensus 446 FT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~ 525 (830)
T COG1202 446 FTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSV 525 (830)
T ss_pred EecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999877665 22345589
Q ss_pred hHHHHHHhhccCCC--CcceEEEEeccccH
Q psy1621 172 ENYIHRIGRGGRFG--RKGVAINFVTAEDK 199 (224)
Q Consensus 172 ~~~~q~~GR~~R~g--~~~~~~~~~~~~~~ 199 (224)
..|.||+|||||.+ ..|.|++++.+...
T Consensus 526 ~EF~QM~GRAGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 526 REFQQMLGRAGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred HHHHHHhcccCCCCcccCceEEEEecCChh
Confidence 99999999999998 57999999877543
No 61
>PRK00254 ski2-like helicase; Provisional
Probab=99.87 E-value=2.9e-21 Score=175.82 Aligned_cols=188 Identities=22% Similarity=0.305 Sum_probs=125.8
Q ss_pred CcccceeecCCCCccccccccC--ccCcccccccccccH--hhhhhhhhhHHHhhhhhhhccCccccee-----EEEEEe
Q psy1621 1 MEELQMVCYPPGHGACADVHVN--VGARIGAGFNADINV--EACADVDVNAAELRRRVLIVGDSMTRIR-----QFYIYI 71 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sATi~~--~~~~~~~~~~~~l~~~~~i~~~~~~~i~-----~~~~~~ 71 (224)
+||++++..+. +|..+...-. ....|.+++|||++. ++. ..+..........+-.+. +.+...
T Consensus 144 iDE~H~l~~~~-rg~~le~il~~l~~~~qiI~lSATl~n~~~la-------~wl~~~~~~~~~rpv~l~~~~~~~~~~~~ 215 (720)
T PRK00254 144 ADEIHLIGSYD-RGATLEMILTHMLGRAQILGLSATVGNAEELA-------EWLNAELVVSDWRPVKLRKGVFYQGFLFW 215 (720)
T ss_pred EcCcCccCCcc-chHHHHHHHHhcCcCCcEEEEEccCCCHHHHH-------HHhCCccccCCCCCCcceeeEecCCeeec
Confidence 58999987653 4454443221 345789999999953 221 112211111110000111 111111
Q ss_pred cCCc------cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC--------------------------------
Q psy1621 72 ERED------WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK-------------------------------- 113 (224)
Q Consensus 72 ~~~~------~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~-------------------------------- 113 (224)
.... .....+.+.+. .++++||||+|++.|+.++..|.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 293 (720)
T PRK00254 216 EDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKA 293 (720)
T ss_pred cCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHH
Confidence 1110 01123334443 3679999999999998887666321
Q ss_pred -CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE-------eCCCC-ChhHHHHHHhhccCC
Q psy1621 114 -EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN-------YDLPS-NRENYIHRIGRGGRF 184 (224)
Q Consensus 114 -~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~-------~~~p~-s~~~~~q~~GR~~R~ 184 (224)
..++.++||++++++|..+++.|++|.++|||||+++++|+|+|..++||. ++.|. +..+|.||+|||||.
T Consensus 294 l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~ 373 (720)
T PRK00254 294 LRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRP 373 (720)
T ss_pred HhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCC
Confidence 236999999999999999999999999999999999999999999999884 44443 567899999999997
Q ss_pred C--CcceEEEEecccc
Q psy1621 185 G--RKGVAINFVTAED 198 (224)
Q Consensus 185 g--~~~~~~~~~~~~~ 198 (224)
| ..|.+++++...+
T Consensus 374 ~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 374 KYDEVGEAIIVATTEE 389 (720)
T ss_pred CcCCCceEEEEecCcc
Confidence 6 5689999887654
No 62
>PRK01172 ski2-like helicase; Provisional
Probab=99.86 E-value=4.3e-21 Score=173.77 Aligned_cols=108 Identities=23% Similarity=0.363 Sum_probs=91.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC-------------------------CCeEEEecCCCCHHHHHHHHHHhhcCCceE
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK-------------------------EFTVSAMHGDMDQNARDVIMRQFRSGSSRV 143 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~-------------------------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~i 143 (224)
.++++||||++++.++.+++.|.+. ..++.++||++++++|..+++.|++|.++|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~V 314 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKV 314 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 4679999999999999999988653 125889999999999999999999999999
Q ss_pred EEEcCCcccCCCCCCCCEEEEeC---------CCCChhHHHHHHhhccCCCC--cceEEEEeccc
Q psy1621 144 LITTDLLARGIDVQQVSLVINYD---------LPSNRENYIHRIGRGGRFGR--KGVAINFVTAE 197 (224)
Q Consensus 144 lv~t~~~~~Gvdi~~~~~vi~~~---------~p~s~~~~~q~~GR~~R~g~--~~~~~~~~~~~ 197 (224)
||||+++++|+|+|... ||+.+ .|.+..+|.||+|||||.|. .|.+++++...
T Consensus 315 LvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 315 IVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred EEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999865 44433 25678899999999999984 56777776554
No 63
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.84 E-value=8.6e-21 Score=125.31 Aligned_cols=78 Identities=50% Similarity=0.819 Sum_probs=75.3
Q ss_pred HHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCC
Q psy1621 108 ESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFG 185 (224)
Q Consensus 108 ~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g 185 (224)
+.|...++.+..+||++++++|..+++.|++++..|||||+++++|+|+|.+++|+++++|+|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 357888999999999999999999999999999999999999999999999999999999999999999999999986
No 64
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.84 E-value=1.2e-20 Score=176.44 Aligned_cols=193 Identities=15% Similarity=0.177 Sum_probs=134.6
Q ss_pred CcccceeecCCCC--ccccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCC----
Q psy1621 1 MEELQMVCYPPGH--GACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIERE---- 74 (224)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~---- 74 (224)
+||++.+...... |-+..+++.....+.+++|||+..+. +...+...|+.........+..+|......
T Consensus 185 IDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~~~-----fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~ 259 (1283)
T TIGR01967 185 IDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDPER-----FSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDD 259 (1283)
T ss_pred EcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCHHH-----HHHHhcCCCEEEECCCcccceeEEecccccccch
Confidence 4777743222211 22444555555678999999997652 222332334332222233455555544221
Q ss_pred -ccHHHHHHHHhcc---CCCCcEEEEeCchHHHHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy1621 75 -DWKFDTLCDLYGT---LSITQAVIFCNTRRKVDWLTESMLKKE---FTVSAMHGDMDQNARDVIMRQFRSGSSRVLITT 147 (224)
Q Consensus 75 -~~k~~~l~~ll~~---~~~~~~iIf~~t~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t 147 (224)
..+.+.+...+.. ...+.+|||+++.++++.+++.|.+.+ ..+..+||+++.++|.++++.+ +..+|++||
T Consensus 260 ~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLAT 337 (1283)
T TIGR01967 260 DLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLAT 337 (1283)
T ss_pred hhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEec
Confidence 1244444444432 245899999999999999999998764 4588999999999999986654 246899999
Q ss_pred CCcccCCCCCCCCEEEEeCCC------------------CChhHHHHHHhhccCCCCcceEEEEeccccHHH
Q psy1621 148 DLLARGIDVQQVSLVINYDLP------------------SNRENYIHRIGRGGRFGRKGVAINFVTAEDKRT 201 (224)
Q Consensus 148 ~~~~~Gvdi~~~~~vi~~~~p------------------~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 201 (224)
+++++|+|||++++||+++.+ .|.++|.||+||+||.+ .|.|+.++++.+...
T Consensus 338 NIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 338 NVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred cHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 999999999999999999843 36689999999999997 999999998765543
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=2.5e-20 Score=167.65 Aligned_cols=123 Identities=19% Similarity=0.272 Sum_probs=112.3
Q ss_pred ccHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q psy1621 75 DWKFDTLCDLYGT--LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLAR 152 (224)
Q Consensus 75 ~~k~~~l~~ll~~--~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~ 152 (224)
..|..++.+.+.. ..+.++||||+|++.++.+++.|.+.++++..+||++...++..+..+++.| .|+|||+++++
T Consensus 411 ~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgR 488 (790)
T PRK09200 411 DEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGR 488 (790)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhc
Confidence 4499999888865 3678999999999999999999999999999999999999988888887766 79999999999
Q ss_pred CCCC---CCCC-----EEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 153 GIDV---QQVS-----LVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 153 Gvdi---~~~~-----~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
|+|| |++. +||+++.|.+...|.|++||+||.|+.|.++.+++..|.
T Consensus 489 G~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 489 GTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred CcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 9999 6888 999999999999999999999999999999999987543
No 66
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.83 E-value=1.1e-19 Score=163.04 Aligned_cols=143 Identities=25% Similarity=0.365 Sum_probs=126.9
Q ss_pred HHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 77 KFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 77 k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
+++.+.+.+... .+.++||||+|++.++.+++.|...++++..+||+++..+|..+++.|+.|++.|+|||+.+++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 566666655443 577999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCC-----CCChhHHHHHHhhccCCCCcceEEEEecc---------ccHHHHHHHHHHhccccccCCcch
Q psy1621 155 DVQQVSLVINYDL-----PSNRENYIHRIGRGGRFGRKGVAINFVTA---------EDKRTLKDTEQFYNTRIEEMPMNV 220 (224)
Q Consensus 155 di~~~~~vi~~~~-----p~s~~~~~q~~GR~~R~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 220 (224)
|+|+++.|++++. |.+..+|.||+||+||. ..|.++.++.. .+....+++++.++......|...
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 9999999998875 78999999999999996 78999999983 577888888888888888777543
No 67
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.83 E-value=1.3e-19 Score=161.94 Aligned_cols=131 Identities=25% Similarity=0.347 Sum_probs=117.9
Q ss_pred HHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 77 KFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 77 k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
+++.|.+.+... .+.++||||+|++.++.+++.|.+.++.+..+||+++..+|.++++.|+.|++.|+|||+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 666666655543 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeC-----CCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHH
Q psy1621 155 DVQQVSLVINYD-----LPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQF 208 (224)
Q Consensus 155 di~~~~~vi~~~-----~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~ 208 (224)
|+|++++|++++ .|.+..+|.|++||+||. ..|.+++++...+....+.+.+.
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999988 799999999999999998 68999999998776666666664
No 68
>KOG0352|consensus
Probab=99.83 E-value=2.6e-20 Score=153.45 Aligned_cols=179 Identities=20% Similarity=0.263 Sum_probs=139.9
Q ss_pred cccccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEec--CCccHHHHHHHHhccC-------------CC
Q psy1621 26 RIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIE--REDWKFDTLCDLYGTL-------------SI 90 (224)
Q Consensus 26 ~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~--~~~~k~~~l~~ll~~~-------------~~ 90 (224)
..-+.++||-++++...+- ....++.|+.+...+..+-..+|-..- .-++-+..|.+..... ..
T Consensus 177 vpwvALTATA~~~VqEDi~-~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~ 255 (641)
T KOG0352|consen 177 VPWVALTATANAKVQEDIA-FQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFT 255 (641)
T ss_pred CceEEeecccChhHHHHHH-HHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcC
Confidence 3456678888887764443 234467888776655433333332111 1111334444433211 13
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSN 170 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s 170 (224)
+-.||||.|+.+|+.++-.|...|++...||+|+...||..+.++|.++++.|++||..+++|||-|++++||||++|.|
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhccCCCCcceEEEEeccccHHHHHHH
Q psy1621 171 RENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDT 205 (224)
Q Consensus 171 ~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 205 (224)
+.-|+|..||+||+|..+.|.++++..|...+.-+
T Consensus 336 ~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 336 LAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred hHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 99999999999999999999999999877665543
No 69
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.82 E-value=2.6e-19 Score=160.71 Aligned_cols=187 Identities=21% Similarity=0.315 Sum_probs=137.0
Q ss_pred cccceeecCCCCccccccccC-----ccCcccccccccccHhhhhhhhhhHHHhh-h--hhhhccCc-ccceeEEEEEec
Q psy1621 2 EELQMVCYPPGHGACADVHVN-----VGARIGAGFNADINVEACADVDVNAAELR-R--RVLIVGDS-MTRIRQFYIYIE 72 (224)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~sATi~~~~~~~~~~~~~~l~-~--~~~i~~~~-~~~i~~~~~~~~ 72 (224)
||+.-++ .+=+|.|++.... ...-|.+.+|||+.+.. ....++. . +..++... ..+.+.......
T Consensus 156 DEiHel~-~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~-----~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~ 229 (814)
T COG1201 156 DEIHALA-ESKRGVQLALSLERLRELAGDFQRIGLSATVGPPE-----EVAKFLVGFGDPCEIVDVSAAKKLEIKVISPV 229 (814)
T ss_pred ehhhhhh-ccccchhhhhhHHHHHhhCcccEEEeehhccCCHH-----HHHHHhcCCCCceEEEEcccCCcceEEEEecC
Confidence 4444443 2446777776542 12789999999995431 1112221 1 34443332 233333333222
Q ss_pred CC--------ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCC-CeEEEecCCCCHHHHHHHHHHhhcCCceE
Q psy1621 73 RE--------DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKE-FTVSAMHGDMDQNARDVIMRQFRSGSSRV 143 (224)
Q Consensus 73 ~~--------~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~r~~~~~~f~~~~~~i 143 (224)
.. ..-.+.+.++++.+ ..+|||+||+.+++.++..|++.+ ..+..+||+++.+.|..+.++|++|+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lra 307 (814)
T COG1201 230 EDLIYDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKA 307 (814)
T ss_pred CccccccchhHHHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceE
Confidence 22 11334445555543 489999999999999999999986 89999999999999999999999999999
Q ss_pred EEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCC-CCcceEEEEecc
Q psy1621 144 LITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRF-GRKGVAINFVTA 196 (224)
Q Consensus 144 lv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~-g~~~~~~~~~~~ 196 (224)
+|||+.++.|||+.+++.||+++.|.+.....||+||+|+. |..+.++++..+
T Consensus 308 vV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 308 VVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred EEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999999999999999865 556778877766
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.82 E-value=1.7e-19 Score=161.14 Aligned_cols=122 Identities=17% Similarity=0.276 Sum_probs=110.7
Q ss_pred ccHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q psy1621 75 DWKFDTLCDLYGT--LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLAR 152 (224)
Q Consensus 75 ~~k~~~l~~ll~~--~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~ 152 (224)
..|..++.+.+.+ ..+.++||||+|++.++.+++.|.+.++++..+||++++.++..+..+++.| .|+|||+++++
T Consensus 407 ~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgR 484 (762)
T TIGR03714 407 PEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGR 484 (762)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEcccccc
Confidence 3499999988865 4678999999999999999999999999999999999999998888877777 79999999999
Q ss_pred CCCCC---------CCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 153 GIDVQ---------QVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 153 Gvdi~---------~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
|+||+ ++.+|++++.|..... .|++||+||.|..|.++.+++.+|.
T Consensus 485 GtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 485 GTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred ccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 99999 8999999999988776 9999999999999999999987643
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.82 E-value=4e-19 Score=163.42 Aligned_cols=124 Identities=24% Similarity=0.409 Sum_probs=112.4
Q ss_pred CccHHHHHHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCC--------CCHHHHHHHHHHhhcCCc
Q psy1621 74 EDWKFDTLCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGD--------MDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 74 ~~~k~~~l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~--------~~~~~r~~~~~~f~~~~~ 141 (224)
+..|++.|.+++.+ .++.++||||+++.+|+.+++.|.+.++.+..+||. +++.+|..++++|++|+.
T Consensus 345 ~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~ 424 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEF 424 (773)
T ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCC
Confidence 34588888888865 467899999999999999999999999999999886 899999999999999999
Q ss_pred eEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEecccc
Q psy1621 142 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAED 198 (224)
Q Consensus 142 ~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 198 (224)
++||+|+++++|+|+|++++||+||+|+++..|.||+||+||.|. |.+++++..+.
T Consensus 425 ~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 425 NVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999865 77787877653
No 72
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.81 E-value=5e-19 Score=157.36 Aligned_cols=124 Identities=19% Similarity=0.264 Sum_probs=113.1
Q ss_pred CccHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q psy1621 74 EDWKFDTLCDLYGT--LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151 (224)
Q Consensus 74 ~~~k~~~l~~ll~~--~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~ 151 (224)
...|+.++.+.+.+ ..+.|+||||+|++.++.+++.|.+.++....+||+ +.+|+..+..|..+...|+|||++++
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAg 464 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAG 464 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEecccc
Confidence 34488888776643 378999999999999999999999999999999999 77899999999999999999999999
Q ss_pred cCCCCCC-------CCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 152 RGIDVQQ-------VSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 152 ~Gvdi~~-------~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
+|+||+. ..+||+++.|.|...|.|+.||+||.|..|.+.++++..|.
T Consensus 465 RGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 465 RGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred CCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 9999988 55999999999999999999999999999999999988754
No 73
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=8e-19 Score=157.28 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=112.5
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLAR 152 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~ 152 (224)
..|..++.+.+... .+.|+||||+|++.++.+++.|.+.++....+||++...|+..+..+++.|. |+|||++++|
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGR 500 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGR 500 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccC
Confidence 44999998888543 7899999999999999999999999999999999999888888888888885 9999999999
Q ss_pred CCCCC---CCC-----EEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 153 GIDVQ---QVS-----LVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 153 Gvdi~---~~~-----~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
|.||+ ++. +||+++.|.|...|.|+.||+||.|.+|.+.++++.+|.
T Consensus 501 GtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 501 GTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred CCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 99994 788 999999999999999999999999999999999988743
No 74
>KOG0329|consensus
Probab=99.78 E-value=6.1e-20 Score=142.26 Aligned_cols=158 Identities=32% Similarity=0.628 Sum_probs=134.4
Q ss_pred ccCcccccccccccHhhhhhhhhhHHHhhhhhhhccC-----cccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEe
Q psy1621 23 VGARIGAGFNADINVEACADVDVNAAELRRRVLIVGD-----SMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFC 97 (224)
Q Consensus 23 ~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~-----~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~ 97 (224)
|.++|.++||||++.++...+. .++.+|+.+... +...++++|+.+...+ |...+.+++..+...+++||+
T Consensus 215 p~~KQvmmfsatlskeiRpvC~---kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e-KNrkl~dLLd~LeFNQVvIFv 290 (387)
T KOG0329|consen 215 PHEKQVMMFSATLSKEIRPVCH---KFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE-KNRKLNDLLDVLEFNQVVIFV 290 (387)
T ss_pred cccceeeeeeeecchhhHHHHH---hhhcCchhhhccchhhhhhhhHHHHHHhhhhhh-hhhhhhhhhhhhhhcceeEee
Confidence 6789999999999999865444 888899887432 4557888898887766 999999999988889999999
Q ss_pred CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHH
Q psy1621 98 NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHR 177 (224)
Q Consensus 98 ~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~ 177 (224)
.++.... | ..+ +|||+.+++|+||..++.+++||+|.+..+|++|
T Consensus 291 Ksv~Rl~-------------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHr 335 (387)
T KOG0329|consen 291 KSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHR 335 (387)
T ss_pred ehhhhhh-------------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHH
Confidence 9887610 2 113 8999999999999999999999999999999999
Q ss_pred HhhccCCCCcceEEEEecc-ccHHHHHHHHHHhccccccCCcc
Q psy1621 178 IGRGGRFGRKGVAINFVTA-EDKRTLKDTEQFYNTRIEEMPMN 219 (224)
Q Consensus 178 ~GR~~R~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 219 (224)
+|||||.|..|.++.|++. ++...+..+.+.+...+.++|..
T Consensus 336 v~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 336 VARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred hhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 9999999999999999887 47888888999898888888865
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.78 E-value=2.3e-18 Score=144.90 Aligned_cols=146 Identities=16% Similarity=0.227 Sum_probs=102.0
Q ss_pred CcccccccccccHhhhhhhhhhHHHhhhhhhh-ccC---------------------cccceeEEEEEecCCccHHHHHH
Q psy1621 25 ARIGAGFNADINVEACADVDVNAAELRRRVLI-VGD---------------------SMTRIRQFYIYIEREDWKFDTLC 82 (224)
Q Consensus 25 ~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i-~~~---------------------~~~~i~~~~~~~~~~~~k~~~l~ 82 (224)
..+.+.+|||+++.+...+.... .+..+... .+. ..+.+.+.+.. ....|.+.+.
T Consensus 181 ~~~~i~lSAT~~~~~~~~l~~~~-~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~l~ 257 (357)
T TIGR03158 181 RRKFVFLSATPDPALILRLQNAK-QAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP--APDFKEEELS 257 (357)
T ss_pred CCcEEEEecCCCHHHHHHHHhcc-ccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe--CCchhHHHHH
Confidence 35899999999988665444210 01122111 111 01245554444 2223544443
Q ss_pred HHhc-------cCCCCcEEEEeCchHHHHHHHHHHHhCC--CeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 83 DLYG-------TLSITQAVIFCNTRRKVDWLTESMLKKE--FTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 83 ~ll~-------~~~~~~~iIf~~t~~~~~~l~~~L~~~~--~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
.++. ..+++++||||+|++.++.+++.|++.+ ..+..+||.+++.+|.+. ++..|||||+++++|
T Consensus 258 ~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rG 331 (357)
T TIGR03158 258 ELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVG 331 (357)
T ss_pred HHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcc
Confidence 3322 2356799999999999999999998764 578899999999988754 367899999999999
Q ss_pred CCCCCCCEEEEeCCCCChhHHHHHHhhcc
Q psy1621 154 IDVQQVSLVINYDLPSNRENYIHRIGRGG 182 (224)
Q Consensus 154 vdi~~~~~vi~~~~p~s~~~~~q~~GR~~ 182 (224)
+|++.. +|| ++ |.+..+|+||+||+|
T Consensus 332 iDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 332 VDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred cCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999986 555 45 889999999999987
No 76
>PRK09401 reverse gyrase; Reviewed
Probab=99.77 E-value=1.2e-18 Score=163.85 Aligned_cols=148 Identities=18% Similarity=0.146 Sum_probs=116.2
Q ss_pred CcccccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHH--
Q psy1621 25 ARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRK-- 102 (224)
Q Consensus 25 ~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~-- 102 (224)
..|++++|||.++..... .+....+...+.......+++.+.|..++ .|...|.+++.... .++||||++++.
T Consensus 268 ~~q~ilfSAT~~~~~~~~-~l~~~ll~~~v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~ 342 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRV-KLFRELLGFEVGSPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKE 342 (1176)
T ss_pred CceEEEEeCCCCccchHH-HHhhccceEEecCcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChH
Confidence 689999999998752110 11112222222223345567888887665 37888888887664 589999999887
Q ss_pred -HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEE----cCCcccCCCCCC-CCEEEEeCCCC------C
Q psy1621 103 -VDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLIT----TDLLARGIDVQQ-VSLVINYDLPS------N 170 (224)
Q Consensus 103 -~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~----t~~~~~Gvdi~~-~~~vi~~~~p~------s 170 (224)
++.+++.|...|+++..+||++ .+.+++|++|+.+|||| |+++++|+|+|+ +++|||||.|. .
T Consensus 343 ~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~ 417 (1176)
T PRK09401 343 YAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEE 417 (1176)
T ss_pred HHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccc
Confidence 9999999999999999999999 22359999999999999 689999999999 89999999998 5
Q ss_pred hhHHHHHHhhcc
Q psy1621 171 RENYIHRIGRGG 182 (224)
Q Consensus 171 ~~~~~q~~GR~~ 182 (224)
...+.+++||+.
T Consensus 418 ~~~~~~~~~r~~ 429 (1176)
T PRK09401 418 ELAPPFLLLRLL 429 (1176)
T ss_pred cccCHHHHHHHH
Confidence 677899999985
No 77
>PRK14701 reverse gyrase; Provisional
Probab=99.77 E-value=1.2e-18 Score=167.22 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=123.8
Q ss_pred cccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHH---HH
Q psy1621 28 GAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRK---VD 104 (224)
Q Consensus 28 ~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~---~~ 104 (224)
.+++|||.++.. ....+....+...+.......+++.+.|...+... | ..+.++++.. +.++||||+|++. |+
T Consensus 272 ll~~SAT~~~r~-~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~-k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae 347 (1638)
T PRK14701 272 LIVASATGKAKG-DRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKII-K-EHVRELLKKL-GKGGLIFVPIDEGAEKAE 347 (1638)
T ss_pred EEEEecCCCchh-HHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHH-H-HHHHHHHHhC-CCCeEEEEeccccchHHH
Confidence 678999998631 11122222222222222334567888887765443 4 5677777765 4689999999876 58
Q ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC----CcccCCCCCC-CCEEEEeCCCC---ChhHHHH
Q psy1621 105 WLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD----LLARGIDVQQ-VSLVINYDLPS---NRENYIH 176 (224)
Q Consensus 105 ~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~----~~~~Gvdi~~-~~~vi~~~~p~---s~~~~~q 176 (224)
.+++.|.+.|+++..+||+ |...+++|++|+.+|||||+ +++||||+|+ +++|||+|.|. +.+.|.|
T Consensus 348 ~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~ 422 (1638)
T PRK14701 348 EIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDP 422 (1638)
T ss_pred HHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhccc
Confidence 9999999999999999995 88999999999999999994 8899999999 99999999998 8777766
Q ss_pred HH-------------hhccCCCCcceEEEEeccccHHHHH
Q psy1621 177 RI-------------GRGGRFGRKGVAINFVTAEDKRTLK 203 (224)
Q Consensus 177 ~~-------------GR~~R~g~~~~~~~~~~~~~~~~~~ 203 (224)
.. ||++|.|..+.++......+...++
T Consensus 423 ~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 423 TIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLR 462 (1638)
T ss_pred chhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHH
Confidence 55 9999999877766444444444333
No 78
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=1.1e-17 Score=149.34 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=106.8
Q ss_pred cHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC-CceEEEEcCCccc
Q psy1621 76 WKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG-SSRVLITTDLLAR 152 (224)
Q Consensus 76 ~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~-~~~ilv~t~~~~~ 152 (224)
.|+..+..+++.+ .++++||||.++..++.+++.| ++.++||+++..+|.+++++|+++ .+++||+|+++.+
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgde 554 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDT 554 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEeccccc
Confidence 3777777777644 6789999999999999998887 356799999999999999999875 7899999999999
Q ss_pred CCCCCCCCEEEEeCCCC-ChhHHHHHHhhccCCCCcceE-------EEEeccccHHHH--HHHHHHh
Q psy1621 153 GIDVQQVSLVINYDLPS-NRENYIHRIGRGGRFGRKGVA-------INFVTAEDKRTL--KDTEQFY 209 (224)
Q Consensus 153 Gvdi~~~~~vi~~~~p~-s~~~~~q~~GR~~R~g~~~~~-------~~~~~~~~~~~~--~~~~~~~ 209 (224)
|+|+|++++||+++.|. |...|.||+||++|.+..+.+ |.+++.++.+.. .+-.+++
T Consensus 555 GIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl 621 (732)
T TIGR00603 555 SIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFL 621 (732)
T ss_pred ccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHH
Confidence 99999999999999884 999999999999999865543 788888644433 3344443
No 79
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.76 E-value=8.2e-18 Score=147.45 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=101.3
Q ss_pred HHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEc-CCcccC
Q psy1621 77 KFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITT-DLLARG 153 (224)
Q Consensus 77 k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t-~~~~~G 153 (224)
+...+.+++... .+.+++|||+++++++.+++.|.+.+.++..+||+++.++|..+++.|++|+..||||| +.+++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 444555544332 45789999999999999999999999999999999999999999999999999999998 899999
Q ss_pred CCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcc-eEEEE
Q psy1621 154 IDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKG-VAINF 193 (224)
Q Consensus 154 vdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~-~~~~~ 193 (224)
+|+|++++||++.++.+...|.|++||++|.+..+ .+.++
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 99999999999999999999999999999987543 34433
No 80
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.76 E-value=6e-18 Score=112.12 Aligned_cols=81 Identities=42% Similarity=0.740 Sum_probs=77.1
Q ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCC
Q psy1621 105 WLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRF 184 (224)
Q Consensus 105 ~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~ 184 (224)
.+++.|.+.++.+..+||++++.+|..+++.|++++..++++|+++++|+|+|.+++|+.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy1621 185 G 185 (224)
Q Consensus 185 g 185 (224)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.76 E-value=2.3e-17 Score=143.77 Aligned_cols=185 Identities=17% Similarity=0.195 Sum_probs=128.3
Q ss_pred cccccccc-ccHhhhhhhhhhHHH-hhhhhhhccCccc-ceeEEEEEecCCccHHHHHHHHh-ccC-CCCcEEEEeCchH
Q psy1621 27 IGAGFNAD-INVEACADVDVNAAE-LRRRVLIVGDSMT-RIRQFYIYIEREDWKFDTLCDLY-GTL-SITQAVIFCNTRR 101 (224)
Q Consensus 27 ~~~~~sAT-i~~~~~~~~~~~~~~-l~~~~~i~~~~~~-~i~~~~~~~~~~~~k~~~l~~ll-~~~-~~~~~iIf~~t~~ 101 (224)
=.+.|||| ||+... +..-+ +..++...-++.+ .+...++... +...+.+.+ .+. .+.++.+.|+-.+
T Consensus 413 h~LvMTATPIPRTLA----lt~fgDldvS~IdElP~GRkpI~T~~i~~~----~~~~v~e~i~~ei~~GrQaY~VcPLIe 484 (677)
T COG1200 413 HVLVMTATPIPRTLA----LTAFGDLDVSIIDELPPGRKPITTVVIPHE----RRPEVYERIREEIAKGRQAYVVCPLIE 484 (677)
T ss_pred cEEEEeCCCchHHHH----HHHhccccchhhccCCCCCCceEEEEeccc----cHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 36889999 566522 22222 2222222223332 3333333322 333333333 333 5788888887544
Q ss_pred --------HHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCC-CC
Q psy1621 102 --------KVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP-SN 170 (224)
Q Consensus 102 --------~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p-~s 170 (224)
.++.+++.|+.. +.++..+||.|+++++..++++|++|+.+|||||.+.+.|||+|+++..|+.+.- ..
T Consensus 485 ESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFG 564 (677)
T COG1200 485 ESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFG 564 (677)
T ss_pred ccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhh
Confidence 456677777754 5579999999999999999999999999999999999999999999999988865 57
Q ss_pred hhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcc
Q psy1621 171 RENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMN 219 (224)
Q Consensus 171 ~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (224)
+++.-|..||+||.+..+.|++++.+...+.-++--+.+....+..-..
T Consensus 565 LaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IA 613 (677)
T COG1200 565 LAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIA 613 (677)
T ss_pred HHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceeh
Confidence 9999999999999999999999998876444444444455455444433
No 82
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=7.1e-18 Score=152.62 Aligned_cols=124 Identities=19% Similarity=0.272 Sum_probs=111.4
Q ss_pred CccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q psy1621 74 EDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~ 151 (224)
...|..++.+.+... .+.|+||||+|++.++.+++.|.+.++....+|+ .+.+|+..+..|..+...|+|||++++
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAG 657 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAG 657 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcC
Confidence 334999999988654 7889999999999999999999999999999998 477899999999999999999999999
Q ss_pred cCCCCC---CCC-----EEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 152 RGIDVQ---QVS-----LVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 152 ~Gvdi~---~~~-----~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
+|+||+ ++. +||..+.|.|...|.|+.||+||.|.+|.+.+|++.+|.
T Consensus 658 RGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 658 RGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999998 443 458889999999999999999999999999999988654
No 83
>KOG0354|consensus
Probab=99.75 E-value=1.6e-17 Score=146.54 Aligned_cols=124 Identities=27% Similarity=0.450 Sum_probs=104.2
Q ss_pred CccHHHHHHHHhccC----CCCcEEEEeCchHHHHHHHHHHHh-C--CCeEEEec--------CCCCHHHHHHHHHHhhc
Q psy1621 74 EDWKFDTLCDLYGTL----SITQAVIFCNTRRKVDWLTESMLK-K--EFTVSAMH--------GDMDQNARDVIMRQFRS 138 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~-~--~~~~~~~~--------g~~~~~~r~~~~~~f~~ 138 (224)
+..|++.+.+++.+. +..++||||.+++.|+.+.++|.+ + +++...+- .+|++.+..+++++|+.
T Consensus 393 ~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~ 472 (746)
T KOG0354|consen 393 ENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD 472 (746)
T ss_pred cChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC
Confidence 445888888777543 567999999999999999999973 2 33333333 38999999999999999
Q ss_pred CCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 139 GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 139 ~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
|+++|||||+++++|+||+.++.||-||...|+...+||.|| ||. +.|.++++.+..+.
T Consensus 473 G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 473 GEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred CCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 999999999999999999999999999999999999999999 997 57777777775433
No 84
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.74 E-value=6e-17 Score=148.17 Aligned_cols=166 Identities=18% Similarity=0.210 Sum_probs=135.1
Q ss_pred Cccccccccc-ccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHHHHh-ccC-CCCcEEEEeCchH
Q psy1621 25 ARIGAGFNAD-INVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLY-GTL-SITQAVIFCNTRR 101 (224)
Q Consensus 25 ~~~~~~~sAT-i~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll-~~~-~~~~~iIf~~t~~ 101 (224)
+.=.+++||| ||+. ++++..+++.-..+..++.++..-.-+..+..+ ..+.+.+ +++ +++++-..+|.++
T Consensus 742 ~VDvLTLSATPIPRT----L~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~---~~ireAI~REl~RgGQvfYv~NrV~ 814 (1139)
T COG1197 742 NVDVLTLSATPIPRT----LNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDD---LLIREAILRELLRGGQVFYVHNRVE 814 (1139)
T ss_pred cCcEEEeeCCCCcch----HHHHHhcchhhhhccCCCCCCcceEEEEecCCh---HHHHHHHHHHHhcCCEEEEEecchh
Confidence 3446899999 5665 689999999888887777766553333333221 2233322 333 5789988899999
Q ss_pred HHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCC-CChhHHHHHH
Q psy1621 102 KVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP-SNRENYIHRI 178 (224)
Q Consensus 102 ~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p-~s~~~~~q~~ 178 (224)
..+.+++.|++. ..++.+.||.|+..+-++++.+|.+|+.+|||||.+.+.|||||++|++|+-+.. ..+++..|..
T Consensus 815 ~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLR 894 (1139)
T COG1197 815 SIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLR 894 (1139)
T ss_pred hHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhc
Confidence 999999999987 5589999999999999999999999999999999999999999999998876655 5799999999
Q ss_pred hhccCCCCcceEEEEeccc
Q psy1621 179 GRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 179 GR~~R~g~~~~~~~~~~~~ 197 (224)
||+||..+.+.||+++.+.
T Consensus 895 GRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 895 GRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cccCCccceEEEEEeecCc
Confidence 9999999999999999853
No 85
>KOG0353|consensus
Probab=99.74 E-value=2e-17 Score=135.00 Aligned_cols=170 Identities=19% Similarity=0.284 Sum_probs=133.9
Q ss_pred ccccccccccHhhhhhhhhhHHHhhhhh---hhccCcccceeEEEEE-ecCCccHHHHHHHHhc-cCCCCcEEEEeCchH
Q psy1621 27 IGAGFNADINVEACADVDVNAAELRRRV---LIVGDSMTRIRQFYIY-IEREDWKFDTLCDLYG-TLSITQAVIFCNTRR 101 (224)
Q Consensus 27 ~~~~~sATi~~~~~~~~~~~~~~l~~~~---~i~~~~~~~i~~~~~~-~~~~~~k~~~l~~ll~-~~~~~~~iIf~~t~~ 101 (224)
..+.++||....+++... +.+-... ...+...+++...+.. ..++++-.+.+.++++ +..+...||||-+.+
T Consensus 252 ~iigltatatn~vl~d~k---~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~ 328 (695)
T KOG0353|consen 252 PIIGLTATATNHVLDDAK---DILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQK 328 (695)
T ss_pred ceeeeehhhhcchhhHHH---HHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccc
Confidence 346677777666543332 2222111 1123334444433332 3344556777777776 457889999999999
Q ss_pred HHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHH-----
Q psy1621 102 KVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIH----- 176 (224)
Q Consensus 102 ~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q----- 176 (224)
.|+.++..|..+|+....+|+.|.+++|..+-+.|..|++.|+|+|-++++|+|-|++++|||-.+|.|.+.|+|
T Consensus 329 d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasari 408 (695)
T KOG0353|consen 329 DCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARI 408 (695)
T ss_pred cHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------HHhhccCCCCcceEEEEeccccH
Q psy1621 177 --------------------------------------RIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 177 --------------------------------------~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
..||+||++....|++++--.|.
T Consensus 409 llrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 409 LLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred HHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 67999999999999998865443
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.70 E-value=2.2e-16 Score=144.47 Aligned_cols=104 Identities=20% Similarity=0.397 Sum_probs=85.9
Q ss_pred HHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCC---CeEEEecCCCCHHHH----HHHHHHh-hcCC---ceEEEEc
Q psy1621 80 TLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKE---FTVSAMHGDMDQNAR----DVIMRQF-RSGS---SRVLITT 147 (224)
Q Consensus 80 ~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r----~~~~~~f-~~~~---~~ilv~t 147 (224)
.+..++... .+++++|||||++.++.+++.|++.+ ..+..+||.+...+| +++++.| ++|+ ..|||||
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaT 628 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVAT 628 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEEC
Confidence 334444332 56789999999999999999998764 579999999999998 4567778 5665 4799999
Q ss_pred CCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCC
Q psy1621 148 DLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGR 186 (224)
Q Consensus 148 ~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~ 186 (224)
+++++|+|+ +++.+|....| ...++||+||++|.+.
T Consensus 629 QViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 629 QVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred cchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999 57888887777 6789999999999875
No 87
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.70 E-value=2.8e-16 Score=133.04 Aligned_cols=188 Identities=20% Similarity=0.217 Sum_probs=138.0
Q ss_pred ccccccccCc------cCcccccccccccHhhhhhhh-hhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHHH-Hh
Q psy1621 14 GACADVHVNV------GARIGAGFNADINVEACADVD-VNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCD-LY 85 (224)
Q Consensus 14 ~~~~~~~~~~------~~~~~~~~sATi~~~~~~~~~-~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~-ll 85 (224)
-.++++.|.+ ...|+++.|||-.+.-.+.-. ...+.+-.|..+.++... .-+... ..+-|.. +-
T Consensus 369 PSAlDNRPL~feEf~~~~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~ie-------vRp~~~-QvdDL~~EI~ 440 (663)
T COG0556 369 PSALDNRPLKFEEFEAKIPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPEIE-------VRPTKG-QVDDLLSEIR 440 (663)
T ss_pred cccccCCCCCHHHHHHhcCCEEEEECCCChHHHHhccCceeEEeecCCCCCCCcee-------eecCCC-cHHHHHHHHH
Confidence 3567777765 347899999998664321111 111222223222222111 111222 3333333 32
Q ss_pred ccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE
Q psy1621 86 GTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN 164 (224)
Q Consensus 86 ~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~ 164 (224)
... .+.+++|-+-|+++++.+.++|...|+++.++|++...-||.+++.+++.|...|||.-+.+.+|+|+|.+..|.+
T Consensus 441 ~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI 520 (663)
T COG0556 441 KRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI 520 (663)
T ss_pred HHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE
Confidence 222 5689999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCCC-----CChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhc
Q psy1621 165 YDLP-----SNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYN 210 (224)
Q Consensus 165 ~~~p-----~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (224)
.|.. .|..+..|-+|||+|+ ..|.|+++.+.-..++-+.+++--+
T Consensus 521 lDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai~ET~R 570 (663)
T COG0556 521 LDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETER 570 (663)
T ss_pred eecCccccccccchHHHHHHHHhhc-cCCeEEEEchhhhHHHHHHHHHHHH
Confidence 8744 6889999999999996 6899999988876666666665443
No 88
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.69 E-value=2.8e-16 Score=145.26 Aligned_cols=123 Identities=23% Similarity=0.323 Sum_probs=109.3
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCC---ceEEEEcCC
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGS---SRVLITTDL 149 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~---~~ilv~t~~ 149 (224)
..|+..|.+++..+ .+.++|||+......+.+..+|...++.+..++|+++..+|..+++.|+... ..+|++|.+
T Consensus 470 SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 34888888888765 5789999999999999999999999999999999999999999999997542 357899999
Q ss_pred cccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcce--EEEEeccc
Q psy1621 150 LARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV--AINFVTAE 197 (224)
Q Consensus 150 ~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~--~~~~~~~~ 197 (224)
++.|+|+..+++||+||+|||+....|++||++|.|+... ++.++..+
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999998654 44555554
No 89
>KOG0349|consensus
Probab=99.69 E-value=8.9e-17 Score=133.03 Aligned_cols=136 Identities=32% Similarity=0.612 Sum_probs=114.2
Q ss_pred hccCCCCcEEEEeCchHHHHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCE
Q psy1621 85 YGTLSITQAVIFCNTRRKVDWLTESMLKKE---FTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSL 161 (224)
Q Consensus 85 l~~~~~~~~iIf~~t~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~ 161 (224)
++++.-.++||||.|+..|+.+.+.+.+.+ +.+.++||+..++||+..++.|+.+..+.||||+++.+|+||.++-+
T Consensus 500 i~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~ 579 (725)
T KOG0349|consen 500 IRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPF 579 (725)
T ss_pred hhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCce
Confidence 344456899999999999999999998874 58999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCChhHHHHHHhhccCCCCcceEEEEecc--------------------------------ccHHHHHHHHHHh
Q psy1621 162 VINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTA--------------------------------EDKRTLKDTEQFY 209 (224)
Q Consensus 162 vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~ 209 (224)
+|+.-.|.+...|.+|+||+||..+-|.++.++.. ++...+.++++.+
T Consensus 580 ~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hl 659 (725)
T KOG0349|consen 580 MINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHL 659 (725)
T ss_pred EEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhh
Confidence 99999999999999999999997665655544432 2345566677777
Q ss_pred ccccccCCcch
Q psy1621 210 NTRIEEMPMNV 220 (224)
Q Consensus 210 ~~~~~~~~~~~ 220 (224)
++.+.+...++
T Consensus 660 n~ti~qv~~~~ 670 (725)
T KOG0349|consen 660 NITIQQVDKTM 670 (725)
T ss_pred cceeeeeCCCC
Confidence 77777665443
No 90
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.68 E-value=2.5e-16 Score=148.52 Aligned_cols=133 Identities=20% Similarity=0.196 Sum_probs=99.3
Q ss_pred cccccccc-ccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCch---HH
Q psy1621 27 IGAGFNAD-INVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTR---RK 102 (224)
Q Consensus 27 ~~~~~sAT-i~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~---~~ 102 (224)
+.+++||| .|..+.. .+....+...+.......+++.+.|..... +...|.++++.. +.++||||+++ +.
T Consensus 268 ~li~~SAT~~p~~~~~--~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l-~~~~IVFv~t~~~~~~ 341 (1171)
T TIGR01054 268 CLIVSSATGRPRGKRA--KLFRELLGFEVGGGSDTLRNVVDVYVEDED---LKETLLEIVKKL-GTGGIVYVSIDYGKEK 341 (1171)
T ss_pred EEEEEeCCCCccccHH--HHcccccceEecCccccccceEEEEEeccc---HHHHHHHHHHHc-CCCEEEEEeccccHHH
Confidence 35668999 4554321 111122222222223345677777765443 345667777655 36899999999 99
Q ss_pred HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEE----cCCcccCCCCCC-CCEEEEeCCCC
Q psy1621 103 VDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLIT----TDLLARGIDVQQ-VSLVINYDLPS 169 (224)
Q Consensus 103 ~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~----t~~~~~Gvdi~~-~~~vi~~~~p~ 169 (224)
|+.+++.|.+.|+++..+||+++. .++++|++|+++|||| |+++++|+|+|+ +++||+||.|.
T Consensus 342 a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 342 AEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 999999999999999999999973 6899999999999999 489999999999 89999999995
No 91
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.68 E-value=2.3e-16 Score=142.88 Aligned_cols=188 Identities=19% Similarity=0.267 Sum_probs=124.7
Q ss_pred CcccceeecCCCCccccccccCc-----cCcccccccccccHhhhhhhhhhHHHhhhhhh----hccCcccce--eEEEE
Q psy1621 1 MEELQMVCYPPGHGACADVHVNV-----GARIGAGFNADINVEACADVDVNAAELRRRVL----IVGDSMTRI--RQFYI 69 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~----i~~~~~~~i--~~~~~ 69 (224)
|||+-|+-.. -+|.|+...... ...+.+.+|||+|.-- ...+.++.... ...+....+ ...+.
T Consensus 152 iDEiH~l~d~-~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~-----evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~ 225 (766)
T COG1204 152 IDEIHLLGDR-TRGPVLESIVARMRRLNELIRIVGLSATLPNAE-----EVADWLNAKLVESDWRPVPLRRGVPYVGAFL 225 (766)
T ss_pred EeeeeecCCc-ccCceehhHHHHHHhhCcceEEEEEeeecCCHH-----HHHHHhCCcccccCCCCcccccCCccceEEE
Confidence 5788877654 366777765432 2257889999997631 11122221111 111111111 11222
Q ss_pred EecCCc-----cHHHHHHHHh-ccC-CCCcEEEEeCchHHHHHHHHHHHhC-----------------------------
Q psy1621 70 YIERED-----WKFDTLCDLY-GTL-SITQAVIFCNTRRKVDWLTESMLKK----------------------------- 113 (224)
Q Consensus 70 ~~~~~~-----~k~~~l~~ll-~~~-~~~~~iIf~~t~~~~~~l~~~L~~~----------------------------- 113 (224)
...... .+.+.+..++ ... .++++||||+|++.+...++.++..
T Consensus 226 ~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 305 (766)
T COG1204 226 GADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSE 305 (766)
T ss_pred EecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccc
Confidence 222111 1222233322 222 4789999999999999999988730
Q ss_pred --------CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEE----EeC-----CCCChhHHHH
Q psy1621 114 --------EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI----NYD-----LPSNRENYIH 176 (224)
Q Consensus 114 --------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi----~~~-----~p~s~~~~~q 176 (224)
..+++++|++++.++|..+.+.|+.|+++||+||+.+.+|+|+|.-+.|| .|+ .+.+.-++.|
T Consensus 306 ~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~Q 385 (766)
T COG1204 306 DEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQ 385 (766)
T ss_pred hHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhh
Confidence 12478999999999999999999999999999999999999999887776 355 4456888999
Q ss_pred HHhhccCCCC--cceEEEEe
Q psy1621 177 RIGRGGRFGR--KGVAINFV 194 (224)
Q Consensus 177 ~~GR~~R~g~--~~~~~~~~ 194 (224)
|.|||||.|- .|.++++.
T Consensus 386 M~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 386 MAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred ccCcCCCCCcCCCCcEEEEe
Confidence 9999999993 56676666
No 92
>KOG0953|consensus
Probab=99.66 E-value=1.3e-15 Score=129.46 Aligned_cols=195 Identities=17% Similarity=0.215 Sum_probs=130.0
Q ss_pred CcccceeecCCCCccccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhccCccccee-EEEEEecCCccHHH
Q psy1621 1 MEELQMVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIR-QFYIYIEREDWKFD 79 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~-~~~~~~~~~~~k~~ 79 (224)
+||+||.-.|+.+-+|..+|-.......=++- .+.+.+.+. + +...+.+.++ +.|..+..-. -.+
T Consensus 281 iDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG---epsvldlV~---~-------i~k~TGd~vev~~YeRl~pL~-v~~ 346 (700)
T KOG0953|consen 281 IDEIQMMRDPSRGWAWTRALLGLAADEIHLCG---EPSVLDLVR---K-------ILKMTGDDVEVREYERLSPLV-VEE 346 (700)
T ss_pred ehhHHhhcCcccchHHHHHHHhhhhhhhhccC---CchHHHHHH---H-------HHhhcCCeeEEEeecccCcce-ehh
Confidence 69999999999988887766543222211111 112211111 1 1222333333 2333332211 223
Q ss_pred HHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCcccCCCC
Q psy1621 80 TLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMDQNARDVIMRQFRS--GSSRVLITTDLLARGIDV 156 (224)
Q Consensus 80 ~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~~~~r~~~~~~f~~--~~~~ilv~t~~~~~Gvdi 156 (224)
.+..-++++.++.+||-+ |++....+...+.+.+.. +++++|+++++.|..-...|++ ++.+||||||+.|+|+|+
T Consensus 347 ~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL 425 (700)
T KOG0953|consen 347 TALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL 425 (700)
T ss_pred hhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc
Confidence 455666777778886644 778888888888888665 9999999999999999999997 778999999999999998
Q ss_pred CCCCEEEEeCC---------CCChhHHHHHHhhccCCCC---cceEEEEeccccHHHHHHHHHHhcccccc
Q psy1621 157 QQVSLVINYDL---------PSNRENYIHRIGRGGRFGR---KGVAINFVTAEDKRTLKDTEQFYNTRIEE 215 (224)
Q Consensus 157 ~~~~~vi~~~~---------p~s~~~~~q~~GR~~R~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (224)
+++.||+++. +-+..+..|.+|||||.|. .|.+..+-.+ .+..+.+.++.+.++
T Consensus 426 -~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e----DL~~L~~~l~~p~ep 491 (700)
T KOG0953|consen 426 -NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE----DLKLLKRILKRPVEP 491 (700)
T ss_pred -ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh----hHHHHHHHHhCCchH
Confidence 7888887763 3467789999999999983 5777766433 334444444444443
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=3.4e-15 Score=134.68 Aligned_cols=124 Identities=20% Similarity=0.246 Sum_probs=111.8
Q ss_pred CccHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q psy1621 74 EDWKFDTLCDLYGT--LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151 (224)
Q Consensus 74 ~~~k~~~l~~ll~~--~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~ 151 (224)
...|..++.+.+.+ ..+.|+||||+|++.++.+++.|.+.+++...+||. +.+|+..+.+|+.++..|+|||++++
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAG 489 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAG 489 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEeccccc
Confidence 34499999998865 478899999999999999999999999999999996 77899999999999999999999999
Q ss_pred cCCCCCCC--------------------------------------CEEEEeCCCCChhHHHHHHhhccCCCCcceEEEE
Q psy1621 152 RGIDVQQV--------------------------------------SLVINYDLPSNRENYIHRIGRGGRFGRKGVAINF 193 (224)
Q Consensus 152 ~Gvdi~~~--------------------------------------~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~ 193 (224)
||+||+-- =+||-...|.|...-.|..||+||.|.+|.+.+|
T Consensus 490 RGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 490 RGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred CCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 99998643 3788888999999999999999999999999999
Q ss_pred eccccH
Q psy1621 194 VTAEDK 199 (224)
Q Consensus 194 ~~~~~~ 199 (224)
++-+|.
T Consensus 570 lSleD~ 575 (830)
T PRK12904 570 LSLEDD 575 (830)
T ss_pred EEcCcH
Confidence 988654
No 94
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=2.8e-15 Score=135.59 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=110.8
Q ss_pred CccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q psy1621 74 EDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~ 151 (224)
...|..++.+.+.+. .+.|+||||+|++.++.+++.|.+.++....+||++...|+..+.++|+.| .|+|||++++
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAG 503 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAG 503 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCcc
Confidence 334998888877543 789999999999999999999999999999999999999999999999999 4999999999
Q ss_pred cCCCCC--------------------------------------CCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEE
Q psy1621 152 RGIDVQ--------------------------------------QVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINF 193 (224)
Q Consensus 152 ~Gvdi~--------------------------------------~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~ 193 (224)
+|+||. +-=+||-...+.|...-.|..||+||.|.+|.+.+|
T Consensus 504 RGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~ 583 (896)
T PRK13104 504 RGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY 583 (896)
T ss_pred CCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE
Confidence 999985 223788888999999999999999999999999999
Q ss_pred eccccH
Q psy1621 194 VTAEDK 199 (224)
Q Consensus 194 ~~~~~~ 199 (224)
++-+|.
T Consensus 584 lSleD~ 589 (896)
T PRK13104 584 LSLEDN 589 (896)
T ss_pred EEcCcH
Confidence 988654
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=6.9e-15 Score=128.63 Aligned_cols=97 Identities=22% Similarity=0.332 Sum_probs=80.0
Q ss_pred HHHHHHHHHhC--CCeEEEecCCCCHHHH--HHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCC------C---
Q psy1621 103 VDWLTESMLKK--EFTVSAMHGDMDQNAR--DVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP------S--- 169 (224)
Q Consensus 103 ~~~l~~~L~~~--~~~~~~~~g~~~~~~r--~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p------~--- 169 (224)
++.+++.|.+. +.++..+|++++..++ ++++++|++|+.+|||+|+++++|+|+|+++.|+..+.. .
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 57778888776 6789999999887655 899999999999999999999999999999988644432 1
Q ss_pred ---ChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 170 ---NRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 170 ---s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
....|.|++||+||.+..|.+++.....+.
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 246789999999999999999876655443
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=8e-15 Score=132.40 Aligned_cols=123 Identities=18% Similarity=0.283 Sum_probs=111.2
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLAR 152 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~ 152 (224)
..|..++.+-+.+. .+.|+||||+|++.++.+++.|.+.++....+|++++..|+..+.++|+.|. |+|||+++++
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGR 509 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGR 509 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCC
Confidence 44888888777644 6889999999999999999999999999999999999999999999999997 9999999999
Q ss_pred CCCCC-------------------------------------CCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEec
Q psy1621 153 GIDVQ-------------------------------------QVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVT 195 (224)
Q Consensus 153 Gvdi~-------------------------------------~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~ 195 (224)
|.||. +-=+||-...+.|...-.|..||+||.|.+|.+.+|++
T Consensus 510 GTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lS 589 (908)
T PRK13107 510 GTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLS 589 (908)
T ss_pred CcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEE
Confidence 99985 23378888899999999999999999999999999998
Q ss_pred cccH
Q psy1621 196 AEDK 199 (224)
Q Consensus 196 ~~~~ 199 (224)
-+|.
T Consensus 590 lED~ 593 (908)
T PRK13107 590 MEDS 593 (908)
T ss_pred eCcH
Confidence 8755
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.61 E-value=2.4e-14 Score=115.62 Aligned_cols=182 Identities=18% Similarity=0.188 Sum_probs=122.7
Q ss_pred cCcccccccccccHhhhhhhh-hhHHHhhhhhhhccCcccceeEEEEEecC---CccHHH-HHHHHhccC--CCCcEEEE
Q psy1621 24 GARIGAGFNADINVEACADVD-VNAAELRRRVLIVGDSMTRIRQFYIYIER---EDWKFD-TLCDLYGTL--SITQAVIF 96 (224)
Q Consensus 24 ~~~~~~~~sATi~~~~~~~~~-~~~~~l~~~~~i~~~~~~~i~~~~~~~~~---~~~k~~-~l~~ll~~~--~~~~~iIf 96 (224)
..--++++|||-+++....+. -....++-|....+.+..-..-.+....+ ..+|+. .|...+... .+.+++||
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 344568899999876542221 11112333333333333322222222111 011222 455555432 57899999
Q ss_pred eCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCC--CChh
Q psy1621 97 CNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--SNRE 172 (224)
Q Consensus 97 ~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p--~s~~ 172 (224)
+++.+..+.+++.|++. ...+..+|+. ...|.+..++|++|++.+|++|.++++|+.+|+++..+.-.-. .+.+
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 99999999999999544 3467889987 4568899999999999999999999999999999987654433 7899
Q ss_pred HHHHHHhhccCCCC--cceEEEEeccccHHHHHHHHH
Q psy1621 173 NYIHRIGRGGRFGR--KGVAINFVTAEDKRTLKDTEQ 207 (224)
Q Consensus 173 ~~~q~~GR~~R~g~--~~~~~~~~~~~~~~~~~~~~~ 207 (224)
...|.+||+||.-. +|.+++|=....+.+.+...+
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ke 426 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKE 426 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHH
Confidence 99999999999864 677877766655555554443
No 98
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.60 E-value=6.8e-15 Score=134.97 Aligned_cols=183 Identities=21% Similarity=0.312 Sum_probs=134.0
Q ss_pred cCcccccccccccHhhhhhhhhhHHHhhhhhhh---ccCcccceeEEEEEec-----C---CccHHHHHHHHhccC--CC
Q psy1621 24 GARIGAGFNADINVEACADVDVNAAELRRRVLI---VGDSMTRIRQFYIYIE-----R---EDWKFDTLCDLYGTL--SI 90 (224)
Q Consensus 24 ~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i---~~~~~~~i~~~~~~~~-----~---~~~k~~~l~~ll~~~--~~ 90 (224)
...|.+..|||+..... ...+........ ....+....+++..-+ . ...+...+..+.... .+
T Consensus 231 ~~~q~i~~SAT~~np~e----~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~ 306 (851)
T COG1205 231 SPLQIICTSATLANPGE----FAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNG 306 (851)
T ss_pred CCceEEEEeccccChHH----HHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcC
Confidence 45689999999943321 222333322222 1122233333333322 0 112555555555443 57
Q ss_pred CcEEEEeCchHHHHHHH----HHHHhCC----CeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEE
Q psy1621 91 TQAVIFCNTRRKVDWLT----ESMLKKE----FTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLV 162 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~----~~L~~~~----~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~v 162 (224)
-++|+|+.+++.++.++ +.+...+ ..+..++|++..++|.++...|++|+..++++|++++.|+|+.+++.|
T Consensus 307 ~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldav 386 (851)
T COG1205 307 IQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAV 386 (851)
T ss_pred ceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhH
Confidence 89999999999999997 3444444 568999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC-ChhHHHHHHhhccCCCCcceEEEEeccc--cHHHHHHHHHHhc
Q psy1621 163 INYDLPS-NRENYIHRIGRGGRFGRKGVAINFVTAE--DKRTLKDTEQFYN 210 (224)
Q Consensus 163 i~~~~p~-s~~~~~q~~GR~~R~g~~~~~~~~~~~~--~~~~~~~~~~~~~ 210 (224)
|..+.|. +..++.|+.||+||.++.+.+++....+ +.++....+..++
T Consensus 387 i~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 387 IAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred hhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 9999999 8999999999999999877777666653 6677777777766
No 99
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.58 E-value=3.6e-14 Score=128.27 Aligned_cols=102 Identities=24% Similarity=0.328 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhC--CCeEEEecCCCC--HHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCC--CC-----
Q psy1621 102 KVDWLTESMLKK--EFTVSAMHGDMD--QNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--SN----- 170 (224)
Q Consensus 102 ~~~~l~~~L~~~--~~~~~~~~g~~~--~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p--~s----- 170 (224)
.++.+++.|.+. +.++..+|+++. .+++++++++|++|+.+|||+|+++++|+|+|+++.|+.++.. .+
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 456777778775 678999999986 4678999999999999999999999999999999998655533 22
Q ss_pred -----hhHHHHHHhhccCCCCcceEEEEeccccHHHHH
Q psy1621 171 -----RENYIHRIGRGGRFGRKGVAINFVTAEDKRTLK 203 (224)
Q Consensus 171 -----~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 203 (224)
...|.|++||+||.+..|.+++.....+....+
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHH
Confidence 367999999999999999999877665544433
No 100
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.56 E-value=1.1e-14 Score=132.75 Aligned_cols=191 Identities=16% Similarity=0.194 Sum_probs=124.8
Q ss_pred CcccceeecCCCCccccccccC--ccCcccccccccccHhhhhhhhhhHHHhhhhhhhccC--cccceeEEEE----Eec
Q psy1621 1 MEELQMVCYPPGHGACADVHVN--VGARIGAGFNADINVEACADVDVNAAELRRRVLIVGD--SMTRIRQFYI----YIE 72 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~--~~~~i~~~~~----~~~ 72 (224)
+||+||+-...+.+.....+-. ..+...+++|||+|+.....+. ........+... .......... ..+
T Consensus 344 lDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~---~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 420 (733)
T COG1203 344 LDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLK---KALGKGREVVENAKFCPKEDEPGLKRKERVD 420 (733)
T ss_pred hccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHH---HHHhcccceeccccccccccccccccccchh
Confidence 5899988777544444443332 4567789999999997654443 222222111111 0000000000 000
Q ss_pred CCccHHHHHHHHh-ccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhh----cCCceEEEE
Q psy1621 73 REDWKFDTLCDLY-GTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFR----SGSSRVLIT 146 (224)
Q Consensus 73 ~~~~k~~~l~~ll-~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~----~~~~~ilv~ 146 (224)
..+.-........ ... .+.+++|.|||+..|..+++.|+..+..+..+||.+...+|.+.++.+. .+...|+||
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVa 500 (733)
T COG1203 421 VEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVA 500 (733)
T ss_pred hhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEE
Confidence 0010000111111 122 5789999999999999999999998878999999999999998888654 457789999
Q ss_pred cCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCC--CcceEEEEeccc
Q psy1621 147 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFG--RKGVAINFVTAE 197 (224)
Q Consensus 147 t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g--~~~~~~~~~~~~ 197 (224)
|++.+.|+|+. .+.+|-- +....+..||+||++|.| ..|.++++...+
T Consensus 501 TQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 501 TQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred eeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 99999999994 5555543 445668999999999999 577787776664
No 101
>KOG0950|consensus
Probab=99.56 E-value=3.7e-14 Score=127.05 Aligned_cols=125 Identities=22% Similarity=0.464 Sum_probs=100.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh--------------------------------------CCCeEEEecCCCCHHHHHH
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLK--------------------------------------KEFTVSAMHGDMDQNARDV 131 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~--------------------------------------~~~~~~~~~g~~~~~~r~~ 131 (224)
+.++||||++++.|+.++..+.+ ...+++++|+|+..++|+.
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 45799999999999999875522 1246899999999999999
Q ss_pred HHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEe---CCC-CChhHHHHHHhhccCCCC--cceEEEEeccccHHHHHHH
Q psy1621 132 IMRQFRSGSSRVLITTDLLARGIDVQQVSLVINY---DLP-SNRENYIHRIGRGGRFGR--KGVAINFVTAEDKRTLKDT 205 (224)
Q Consensus 132 ~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~---~~p-~s~~~~~q~~GR~~R~g~--~~~~~~~~~~~~~~~~~~~ 205 (224)
+...|+.|.+.|++||+.+..|+|+|..++++-. +.+ -+.-.|.||+|||||.|- .|.+++.+...+.....
T Consensus 540 iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~-- 617 (1008)
T KOG0950|consen 540 IEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVR-- 617 (1008)
T ss_pred HHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHH--
Confidence 9999999999999999999999999998887743 222 367789999999999984 57788888877766555
Q ss_pred HHHhccccccCC
Q psy1621 206 EQFYNTRIEEMP 217 (224)
Q Consensus 206 ~~~~~~~~~~~~ 217 (224)
+.+..+.+.+.
T Consensus 618 -~lv~~~~~~~~ 628 (1008)
T KOG0950|consen 618 -ELVNSPLKPLN 628 (1008)
T ss_pred -HHHhccccccc
Confidence 44445555443
No 102
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.55 E-value=1e-13 Score=119.72 Aligned_cols=107 Identities=25% Similarity=0.452 Sum_probs=95.7
Q ss_pred HHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 77 KFDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 77 k~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
|...+..++... .+.+++||+.++.+++.++..+...+. +..++|..+..+|..+++.|++|++.+|+++.++.+|+|
T Consensus 269 ~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvD 347 (442)
T COG1061 269 KIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVD 347 (442)
T ss_pred HHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceec
Confidence 333444444433 467999999999999999999988777 889999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCC
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRF 184 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~ 184 (224)
+|+++++|...+..|...|.||+||+-|.
T Consensus 348 iP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 348 IPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999994
No 103
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.55 E-value=3.3e-14 Score=128.95 Aligned_cols=169 Identities=15% Similarity=0.247 Sum_probs=129.7
Q ss_pred cccccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCcc-HHHHHHHHhc---cCCCCcEEEEeCchH
Q psy1621 26 RIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDW-KFDTLCDLYG---TLSITQAVIFCNTRR 101 (224)
Q Consensus 26 ~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~-k~~~l~~ll~---~~~~~~~iIf~~t~~ 101 (224)
--.+.+|||+..+- ++..+-..|+.....-...++.+|......++ -.+.+...+. ....+.+|||.+-..
T Consensus 196 LKiIimSATld~~r-----fs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 196 LKLIIMSATLDAER-----FSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred ceEEEEecccCHHH-----HHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 34578999998872 33333335555555555567777755554444 3344444443 335789999999999
Q ss_pred HHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeC-----------
Q psy1621 102 KVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYD----------- 166 (224)
Q Consensus 102 ~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~----------- 166 (224)
+.+.+.+.|.+ ....+.++||.++.++..++++--..|+-+|++||++++.++.||++.+||+.+
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999987 347899999999999999988888888777999999999999999999999665
Q ss_pred -------CCCChhHHHHHHhhccCCCCcceEEEEeccccHH
Q psy1621 167 -------LPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKR 200 (224)
Q Consensus 167 -------~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 200 (224)
.|.|-++..||.|||||- ..|.|+-++++++..
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred CceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 344678899999999997 599999999885443
No 104
>KOG0951|consensus
Probab=99.51 E-value=2.7e-13 Score=124.11 Aligned_cols=122 Identities=18% Similarity=0.351 Sum_probs=98.1
Q ss_pred HHhccCCCCcEEEEeCchHHHHHHHHHHHh-------------------------------------CCCeEEEecCCCC
Q psy1621 83 DLYGTLSITQAVIFCNTRRKVDWLTESMLK-------------------------------------KEFTVSAMHGDMD 125 (224)
Q Consensus 83 ~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~-------------------------------------~~~~~~~~~g~~~ 125 (224)
+++.+...+++|||+.+++++...|+.++. ...+++.+|+||.
T Consensus 539 KVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~ 618 (1674)
T KOG0951|consen 539 KVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLN 618 (1674)
T ss_pred HHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCC
Confidence 455666679999999999999998887752 1356899999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE----eCC------CCChhHHHHHHhhccCCCC--cceEEEE
Q psy1621 126 QNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL------PSNRENYIHRIGRGGRFGR--KGVAINF 193 (224)
Q Consensus 126 ~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~----~~~------p~s~~~~~q~~GR~~R~g~--~~~~~~~ 193 (224)
+.+|..+.+.|..|.++++++|..+++|+|+|.-+.+|. |++ +.++.+..||.||+||.+- .|.+++.
T Consensus 619 R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiii 698 (1674)
T KOG0951|consen 619 RKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIII 698 (1674)
T ss_pred cchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeec
Confidence 999999999999999999999999999999999887773 442 3468899999999999974 4556555
Q ss_pred eccccHHHHHH
Q psy1621 194 VTAEDKRTLKD 204 (224)
Q Consensus 194 ~~~~~~~~~~~ 204 (224)
....+..++..
T Consensus 699 t~~se~qyyls 709 (1674)
T KOG0951|consen 699 TDHSELQYYLS 709 (1674)
T ss_pred cCchHhhhhHH
Confidence 44445444444
No 105
>KOG0384|consensus
Probab=99.48 E-value=1.8e-13 Score=125.04 Aligned_cols=121 Identities=23% Similarity=0.317 Sum_probs=109.3
Q ss_pred HHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC---CceEEEEcCCcc
Q psy1621 77 KFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG---SSRVLITTDLLA 151 (224)
Q Consensus 77 k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~---~~~ilv~t~~~~ 151 (224)
|+-+|-++|..+ .+++||||..-+.+.+.++++|...++....+.|++..+.|+..++.|+.. ....|+||-+.|
T Consensus 684 KlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 684 KLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred cEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 666666777655 579999999999999999999999999999999999999999999999854 446999999999
Q ss_pred cCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcc--eEEEEeccc
Q psy1621 152 RGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKG--VAINFVTAE 197 (224)
Q Consensus 152 ~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~--~~~~~~~~~ 197 (224)
.|||+..+++||+||..|+|..-+|+..||+|.|+.. .+|-|++.+
T Consensus 764 LGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 764 LGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred ccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 9999999999999999999999999999999999754 577788876
No 106
>KOG4150|consensus
Probab=99.46 E-value=2e-13 Score=116.80 Aligned_cols=145 Identities=18% Similarity=0.335 Sum_probs=119.1
Q ss_pred HHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhC----CC----eEEEecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy1621 77 KFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKK----EF----TVSAMHGDMDQNARDVIMRQFRSGSSRVLIT 146 (224)
Q Consensus 77 k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~----~~----~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~ 146 (224)
+.....+++.++ .+-++|-||.+++-|+.+...-+.. +. .+..|.||.+.++|.++..++-.|+..-+|+
T Consensus 510 ~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIa 589 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIA 589 (1034)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEe
Confidence 444555555544 5679999999999999877755432 11 3567889999999999999999999999999
Q ss_pred cCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEecc--ccHHHHHHHHHHhccccccCCcchh
Q psy1621 147 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTA--EDKRTLKDTEQFYNTRIEEMPMNVA 221 (224)
Q Consensus 147 t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (224)
|++++.|+||.+.+.|++.+.|.|...+.|..|||||..+++.++++.+. -|..++...+..++.+-.++-+++.
T Consensus 590 TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~ 666 (1034)
T KOG4150|consen 590 TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQ 666 (1034)
T ss_pred cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecc
Confidence 99999999999999999999999999999999999999887765555444 5888899899988887777665543
No 107
>KOG0387|consensus
Probab=99.46 E-value=9.7e-13 Score=115.99 Aligned_cols=136 Identities=21% Similarity=0.277 Sum_probs=116.6
Q ss_pred CccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHH-hCCCeEEEecCCCCHHHHHHHHHHhhcCCce--EEEEcC
Q psy1621 74 EDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESML-KKEFTVSAMHGDMDQNARDVIMRQFRSGSSR--VLITTD 148 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~-~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~--ilv~t~ 148 (224)
...|+..+.++++.. .+.++|+|..++.+.+.+...|. ..++.+..+.|..+...|..++++|++++.. .|++|.
T Consensus 528 ~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTr 607 (923)
T KOG0387|consen 528 RSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTR 607 (923)
T ss_pred hcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEec
Confidence 345999999999865 67899999999999999999998 5799999999999999999999999987653 788999
Q ss_pred CcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcc--eEEEEeccccHHHHHHHHHHh
Q psy1621 149 LLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKG--VAINFVTAEDKRTLKDTEQFY 209 (224)
Q Consensus 149 ~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~~~~~~~~~~ 209 (224)
+.|.|+|+.+++.||+||+.|+|+.-.|...||+|.|+.. .+|-+++....+......+++
T Consensus 608 vGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~ 670 (923)
T KOG0387|consen 608 VGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIF 670 (923)
T ss_pred ccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999754 455566666555544444444
No 108
>KOG0922|consensus
Probab=99.46 E-value=4.8e-13 Score=116.18 Aligned_cols=168 Identities=14% Similarity=0.231 Sum_probs=128.0
Q ss_pred cccccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHH---HHhccCCCCcEEEEeCchHH
Q psy1621 26 RIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLC---DLYGTLSITQAVIFCNTRRK 102 (224)
Q Consensus 26 ~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~---~ll~~~~~~~~iIf~~t~~~ 102 (224)
--.+.+|||+..+. ++.-+...|+.....-...++.+|..-+..++--+.+. ++....+++-+|||....++
T Consensus 196 LklIimSATlda~k-----fS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeE 270 (674)
T KOG0922|consen 196 LKLIIMSATLDAEK-----FSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEE 270 (674)
T ss_pred ceEEEEeeeecHHH-----HHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Confidence 34578999998763 33333333555455555567777766555554444443 44444577899999999999
Q ss_pred HHHHHHHHHhC----CC----eEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeC--------
Q psy1621 103 VDWLTESMLKK----EF----TVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYD-------- 166 (224)
Q Consensus 103 ~~~l~~~L~~~----~~----~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~-------- 166 (224)
.+.+.+.|.+. +. -+..+||.++.++..++++.-..|.-+|+++|++++..+.|+++.+||+.+
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeec
Confidence 99999988765 11 257899999999999999888889999999999999999999999999655
Q ss_pred ----------CCCChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 167 ----------LPSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 167 ----------~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
.|.|-++-.||.|||||.| .|.|+-++++++.
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 3457788899999999974 8999999988654
No 109
>KOG0385|consensus
Probab=99.46 E-value=6.4e-13 Score=116.79 Aligned_cols=122 Identities=22% Similarity=0.322 Sum_probs=110.4
Q ss_pred cHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCc---eEEEEcCCc
Q psy1621 76 WKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSS---RVLITTDLL 150 (224)
Q Consensus 76 ~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~---~ilv~t~~~ 150 (224)
.|+..|-+++..+ .+++||||..-..+.+.+..++.-.++....+.|+++.++|...++.|..... -.|++|.++
T Consensus 471 GKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAG 550 (971)
T KOG0385|consen 471 GKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAG 550 (971)
T ss_pred cceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccc
Confidence 4999999998766 68999999999999999999999999999999999999999999999986653 478999999
Q ss_pred ccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcce--EEEEeccc
Q psy1621 151 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV--AINFVTAE 197 (224)
Q Consensus 151 ~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~--~~~~~~~~ 197 (224)
|.|||+..+++||.||..|+|..-+|...||+|.|+... |+-+++++
T Consensus 551 GLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 551 GLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999999999999999999999999999999999998654 55566665
No 110
>KOG0390|consensus
Probab=99.43 E-value=1.8e-12 Score=115.88 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=99.0
Q ss_pred cHHHHHHHHhc---cCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCce---EEEEcCC
Q psy1621 76 WKFDTLCDLYG---TLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSR---VLITTDL 149 (224)
Q Consensus 76 ~k~~~l~~ll~---~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~---ilv~t~~ 149 (224)
.|+..|..++. +..-.++++..|.+.+.+.+.+.++-.|..+..+||.++..+|+.+++.|++.... .|.+|.+
T Consensus 578 ~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKA 657 (776)
T KOG0390|consen 578 GKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKA 657 (776)
T ss_pred hHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEeccc
Confidence 36666766652 22334666666778878888888877899999999999999999999999976443 6777899
Q ss_pred cccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEe
Q psy1621 150 LARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFV 194 (224)
Q Consensus 150 ~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~ 194 (224)
+|.|||+-+++.||.+|++|+|+.-.|+++|++|+||...|++|-
T Consensus 658 gg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 658 GGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred ccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 999999999999999999999999999999999999987766553
No 111
>KOG0952|consensus
Probab=99.43 E-value=2.3e-12 Score=116.56 Aligned_cols=118 Identities=19% Similarity=0.314 Sum_probs=96.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC-----------------------CCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK-----------------------EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~-----------------------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
.+.+++|||.+++.+-..|+.|.+. ..+.+++|+||..++|.-+.+.|+.|.++||+
T Consensus 348 ~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~ 427 (1230)
T KOG0952|consen 348 EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLC 427 (1230)
T ss_pred cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEE
Confidence 4789999999999999999888552 13578899999999999999999999999999
Q ss_pred EcCCcccCCCCCCCCEEEEeCCC-----C------ChhHHHHHHhhccCCC--CcceEEEEeccccHHHHHHHHH
Q psy1621 146 TTDLLARGIDVQQVSLVINYDLP-----S------NRENYIHRIGRGGRFG--RKGVAINFVTAEDKRTLKDTEQ 207 (224)
Q Consensus 146 ~t~~~~~Gvdi~~~~~vi~~~~p-----~------s~~~~~q~~GR~~R~g--~~~~~~~~~~~~~~~~~~~~~~ 207 (224)
||..+.+|+|+|.-..+| .+.+ . +.-+.+|..|||||.+ ..|.++++.+.+..+.+..+-.
T Consensus 428 cTaTLAwGVNLPA~aViI-KGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~ 501 (1230)
T KOG0952|consen 428 CTATLAWGVNLPAYAVII-KGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLT 501 (1230)
T ss_pred ecceeeeccCCcceEEEe-cCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHc
Confidence 999999999998765444 3322 1 3456899999999986 6799999988877776665443
No 112
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.42 E-value=3.1e-12 Score=120.44 Aligned_cols=96 Identities=24% Similarity=0.409 Sum_probs=83.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC------C---CeEEEecCCCCHHHHHHHHHHhhcCCc-eEEEEcCCcccCCCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK------E---FTVSAMHGDMDQNARDVIMRQFRSGSS-RVLITTDLLARGIDVQQ 158 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~------~---~~~~~~~g~~~~~~r~~~~~~f~~~~~-~ilv~t~~~~~Gvdi~~ 158 (224)
.++++||||.++++|+.+++.|.+. + ..+..+||+.+ ++..++++|++++. .|+|+++++.+|+|+|.
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 4579999999999999999887653 1 24567888875 46789999999876 69999999999999999
Q ss_pred CCEEEEeCCCCChhHHHHHHhhccCCCC
Q psy1621 159 VSLVINYDLPSNRENYIHRIGRGGRFGR 186 (224)
Q Consensus 159 ~~~vi~~~~p~s~~~~~q~~GR~~R~g~ 186 (224)
+.+|+++.++.|...|.||+||+.|...
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 9999999999999999999999999754
No 113
>KOG0923|consensus
Probab=99.35 E-value=4e-12 Score=110.34 Aligned_cols=164 Identities=16% Similarity=0.264 Sum_probs=127.2
Q ss_pred cccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccC---CCCcEEEEeCchHHHH
Q psy1621 28 GAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTL---SITQAVIFCNTRRKVD 104 (224)
Q Consensus 28 ~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~---~~~~~iIf~~t~~~~~ 104 (224)
.+..|||+..+ .++.-+-..|+.....-...+..+|-..+..++--.++..++.-+ +.+.+|||..-.+..+
T Consensus 413 llIsSAT~DAe-----kFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIE 487 (902)
T KOG0923|consen 413 LLISSATMDAE-----KFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIE 487 (902)
T ss_pred EEeeccccCHH-----HHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHH
Confidence 47799999876 344444456666666666677778887777775555555554422 6788999998777766
Q ss_pred HHHHHHHh----C-----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeC---------
Q psy1621 105 WLTESMLK----K-----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYD--------- 166 (224)
Q Consensus 105 ~l~~~L~~----~-----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~--------- 166 (224)
...+.|.. + .+-+.++|+.++.+...++++---.|--+|++||++++..+.|+++.+||+-+
T Consensus 488 t~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynp 567 (902)
T KOG0923|consen 488 TVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNP 567 (902)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCC
Confidence 66665543 2 34588999999999999999988888899999999999999999999999654
Q ss_pred ---------CCCChhHHHHHHhhccCCCCcceEEEEeccc
Q psy1621 167 ---------LPSNRENYIHRIGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 167 ---------~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~ 197 (224)
.|.|.++-.||+|||||.| +|.|+-+++..
T Consensus 568 rtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 568 RTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 3456788899999999986 89999999865
No 114
>KOG0947|consensus
Probab=99.35 E-value=6.4e-12 Score=112.78 Aligned_cols=119 Identities=19% Similarity=0.317 Sum_probs=95.9
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCC---------------------------------------CeEEE
Q psy1621 79 DTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKE---------------------------------------FTVSA 119 (224)
Q Consensus 79 ~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~---------------------------------------~~~~~ 119 (224)
..+...+....--|+||||-+++.|+..+.+|...+ -++++
T Consensus 556 l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaV 635 (1248)
T KOG0947|consen 556 LDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAV 635 (1248)
T ss_pred HHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchh
Confidence 334444444455699999999999999999885421 24889
Q ss_pred ecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeC--------CCCChhHHHHHHhhccCCC--Ccce
Q psy1621 120 MHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYD--------LPSNRENYIHRIGRGGRFG--RKGV 189 (224)
Q Consensus 120 ~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~--------~p~s~~~~~q~~GR~~R~g--~~~~ 189 (224)
+|||+-+-.++-+.--|..|-++||+||..+++|||.|.-.+|+..- .--.+-.|.||+|||||.| ..|.
T Consensus 636 HH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGT 715 (1248)
T KOG0947|consen 636 HHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGT 715 (1248)
T ss_pred hcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCce
Confidence 99999999999999999999999999999999999999877776321 1135778999999999999 4688
Q ss_pred EEEEeccc
Q psy1621 190 AINFVTAE 197 (224)
Q Consensus 190 ~~~~~~~~ 197 (224)
++++..+.
T Consensus 716 Vii~~~~~ 723 (1248)
T KOG0947|consen 716 VIIMCKDS 723 (1248)
T ss_pred EEEEecCC
Confidence 88877664
No 115
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=2.1e-11 Score=109.95 Aligned_cols=123 Identities=18% Similarity=0.268 Sum_probs=101.1
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLAR 152 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~ 152 (224)
..|+.++.+-+.+. .+.|+||.|.|.+.++.+++.|.+.|+...++++.....|...+-++-+ .-.|.|||+++|+
T Consensus 409 ~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa~AG~--~GaVTIATNMAGR 486 (925)
T PRK12903 409 HAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQ--KGAITIATNMAGR 486 (925)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHHHHHhCCC--CCeEEEecccccC
Confidence 34888888766543 6889999999999999999999999999999999866555444432222 3379999999999
Q ss_pred CCCCCCC--------CEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 153 GIDVQQV--------SLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 153 Gvdi~~~--------~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
|.||.-- =+||....|.|...-.|..||+||.|.+|.+.+|++-+|.
T Consensus 487 GTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 487 GTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred CcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 9998532 2899999999999999999999999999999999888643
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.30 E-value=2.8e-11 Score=107.63 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=103.0
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLAR 152 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~ 152 (224)
..|..++.+-+... .+.|+||.+.|.+.++.+++.|.+.+++..++++.....|-..+-+.-+.| .|-|||+++|+
T Consensus 410 ~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGR 487 (764)
T PRK12326 410 AEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGR 487 (764)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCC
Confidence 34888888766543 789999999999999999999999999999999987666655444444444 68999999999
Q ss_pred CCCCC---------------CCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 153 GIDVQ---------------QVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 153 Gvdi~---------------~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
|.||. +-=+||-...+.|...-.|..||+||.|++|.+.+|++-+|.
T Consensus 488 GTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 488 GTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred ccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 99985 233888888999999999999999999999999999988654
No 117
>KOG0392|consensus
Probab=99.28 E-value=4.1e-11 Score=109.96 Aligned_cols=123 Identities=23% Similarity=0.374 Sum_probs=104.4
Q ss_pred ccHHHHHHHHhccC----------------CCCcEEEEeCchHHHHHHHHHHHhC-CCeEE--EecCCCCHHHHHHHHHH
Q psy1621 75 DWKFDTLCDLYGTL----------------SITQAVIFCNTRRKVDWLTESMLKK-EFTVS--AMHGDMDQNARDVIMRQ 135 (224)
Q Consensus 75 ~~k~~~l~~ll~~~----------------~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~--~~~g~~~~~~r~~~~~~ 135 (224)
..|+.+|.+++.+. .++++||||.-+.+.+.+.+-|.+. -..+. .+.|+.++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 34999999998654 2468999999999999999988665 33444 78899999999999999
Q ss_pred hhcC-CceE-EEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcce--EEEEeccc
Q psy1621 136 FRSG-SSRV-LITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV--AINFVTAE 197 (224)
Q Consensus 136 f~~~-~~~i-lv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~--~~~~~~~~ 197 (224)
|+++ .+++ +.+|.+.|.|+|+.+++.||+++..|+|..-+|.+.||+|.|+... |+-+++..
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 9998 6665 5567899999999999999999999999999999999999998765 55555554
No 118
>KOG0948|consensus
Probab=99.27 E-value=6.4e-12 Score=110.41 Aligned_cols=109 Identities=21% Similarity=0.385 Sum_probs=91.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCC---------------------------------------CeEEEecCCCCHHHH
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKE---------------------------------------FTVSAMHGDMDQNAR 129 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~---------------------------------------~~~~~~~g~~~~~~r 129 (224)
+..|+|||+-+++.|+.+|-.+.+.. -+++++|||+-+--+
T Consensus 382 ~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlK 461 (1041)
T KOG0948|consen 382 NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILK 461 (1041)
T ss_pred cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHH
Confidence 45699999999999999999875532 247899999999999
Q ss_pred HHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE----eCC----CCChhHHHHHHhhccCCCC--cceEEEEeccc
Q psy1621 130 DVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL----PSNRENYIHRIGRGGRFGR--KGVAINFVTAE 197 (224)
Q Consensus 130 ~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~----~~~----p~s~~~~~q~~GR~~R~g~--~~~~~~~~~~~ 197 (224)
+-+.=-|.+|-+++|+||..++.|+|.|.-+.|+. ||. ..|.-.|.||.|||||.|. .|.|+++++..
T Consensus 462 E~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 462 EVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred HHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 99999999999999999999999999999887773 332 2356679999999999994 68888888764
No 119
>KOG0389|consensus
Probab=99.25 E-value=9.1e-11 Score=103.75 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=111.4
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCc--eEEEEcCCc
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSS--RVLITTDLL 150 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~--~ilv~t~~~ 150 (224)
..|...|..++... .++++|||..-..+.+.+...|.-++++...+.|...-.+|+.+++.|...+. -+|++|.+.
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 45899999999776 57999999999999999999999999999999999999999999999997754 478999999
Q ss_pred ccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcce--EEEEecccc
Q psy1621 151 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV--AINFVTAED 198 (224)
Q Consensus 151 ~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~--~~~~~~~~~ 198 (224)
|.|||+..+++||++|..++|-.-.|+-.||+|.|+... ++-+++++.
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 999999999999999999999999999999999998654 556666653
No 120
>KOG0391|consensus
Probab=99.22 E-value=1.7e-10 Score=105.61 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=107.8
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCC-c-eEEEEcCCc
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGS-S-RVLITTDLL 150 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~-~-~ilv~t~~~ 150 (224)
..|+..|.-++..+ .++++|||+.-.++.+.+...|.-+|+....+.|..+-++|+...++|+... + +.+++|-..
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 34888777777665 5899999999999999999999999999999999999999999999999763 3 578889999
Q ss_pred ccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceE--EEEeccc
Q psy1621 151 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVA--INFVTAE 197 (224)
Q Consensus 151 ~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~--~~~~~~~ 197 (224)
+.|||+.+++.||+||..|++..--|.-.||.|.|+...+ |-++++.
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999999999999999999999986554 4455554
No 121
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=1.5e-10 Score=105.96 Aligned_cols=123 Identities=18% Similarity=0.290 Sum_probs=105.2
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLAR 152 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~ 152 (224)
..|..++.+-+.+. .+.|+||-+.|++..+.+++.|.+.++...++++.....|..-+.++-+.| .|-|||+++|+
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGR 688 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCC
Confidence 34888888777654 789999999999999999999999999999999987777766666555555 68899999999
Q ss_pred CCCCC--------CCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 153 GIDVQ--------QVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 153 Gvdi~--------~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
|-||. +--+||-...+.|...-.|..||+||.|.+|.+.+|++-+|.
T Consensus 689 GTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 689 GTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99995 344888888999999999999999999999999999988643
No 122
>KOG0924|consensus
Probab=99.18 E-value=6.8e-11 Score=103.23 Aligned_cols=164 Identities=15% Similarity=0.239 Sum_probs=119.3
Q ss_pred cccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccC---CCCcEEEEeCchHH--
Q psy1621 28 GAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTL---SITQAVIFCNTRRK-- 102 (224)
Q Consensus 28 ~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~---~~~~~iIf~~t~~~-- 102 (224)
.+..|||+..+- +..-+-..|..-...-...+...|...+-+++--.++.+.+.-+ +.+..|||..-.+.
T Consensus 503 liVtSATm~a~k-----f~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE 577 (1042)
T KOG0924|consen 503 LIVTSATMDAQK-----FSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIE 577 (1042)
T ss_pred EEEeeccccHHH-----HHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchh
Confidence 466899997762 32222224433333333345566666666666666666665422 45789999975544
Q ss_pred --HHHHHHHHHhC------CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeC--------
Q psy1621 103 --VDWLTESMLKK------EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYD-------- 166 (224)
Q Consensus 103 --~~~l~~~L~~~------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~-------- 166 (224)
|+.+...|.+. ++.+..+++.++.+-..+++..-..|.-+++|||++++..+.+|++.+||+.+
T Consensus 578 ~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn 657 (1042)
T KOG0924|consen 578 CTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYN 657 (1042)
T ss_pred HHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecc
Confidence 45555555543 56799999999999999998888888889999999999999999999999765
Q ss_pred ----------CCCChhHHHHHHhhccCCCCcceEEEEeccc
Q psy1621 167 ----------LPSNRENYIHRIGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 167 ----------~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~ 197 (224)
.|.|-.+-.||.|||||.| +|.||-+++++
T Consensus 658 ~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 658 PRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 4556777899999999975 89999998774
No 123
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=1.9e-10 Score=104.64 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=102.9
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLAR 152 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~ 152 (224)
..|..++.+-+... .+.|+||-+.|++..+.+++.|.+.++...++++.....|...+-++-+.| .|-|||+++|+
T Consensus 432 ~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~G--aVTIATNMAGR 509 (913)
T PRK13103 432 EEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRPG--ALTIATNMAGR 509 (913)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCCC--cEEEeccCCCC
Confidence 34998888877644 789999999999999999999999999988999987766655555444444 68999999999
Q ss_pred CCCCC-------------------------------------CCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEec
Q psy1621 153 GIDVQ-------------------------------------QVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVT 195 (224)
Q Consensus 153 Gvdi~-------------------------------------~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~ 195 (224)
|.||. +-=+||-...+.|...-.|..||+||.|.+|.+.+|++
T Consensus 510 GTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lS 589 (913)
T PRK13103 510 GTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLS 589 (913)
T ss_pred CCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEE
Confidence 99984 23378888899999999999999999999999999998
Q ss_pred cccH
Q psy1621 196 AEDK 199 (224)
Q Consensus 196 ~~~~ 199 (224)
.+|.
T Consensus 590 lED~ 593 (913)
T PRK13103 590 LEDS 593 (913)
T ss_pred cCcH
Confidence 8643
No 124
>KOG0388|consensus
Probab=99.15 E-value=1.9e-10 Score=100.90 Aligned_cols=124 Identities=18% Similarity=0.298 Sum_probs=108.6
Q ss_pred CccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCce-EEEEcCCc
Q psy1621 74 EDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSR-VLITTDLL 150 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~-ilv~t~~~ 150 (224)
+..|+..|-+++..+ .++++|+|+.-.++.+.+..+|.-.++....+.|+....+|..++.+|+..++- .|++|.+.
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 344777777777655 578999999999999999999999999999999999999999999999987664 68899999
Q ss_pred ccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcce--EEEEeccc
Q psy1621 151 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV--AINFVTAE 197 (224)
Q Consensus 151 ~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~--~~~~~~~~ 197 (224)
|.|||+..++.||+||..|++..-.|.+.||.|-|+..- |+-++...
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 999999999999999999999999999999999998654 44444443
No 125
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=5.4e-10 Score=101.91 Aligned_cols=123 Identities=18% Similarity=0.247 Sum_probs=102.8
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLAR 152 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~ 152 (224)
..|..++.+-+... .+.|+||-|.|.+..+.+++.|.+.++...++++.....|...+.++-+.| .|.|||+++|+
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~g--~VTIATNmAGR 628 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKLG--AVTVATNMAGR 628 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCCC--cEEEeeccccC
Confidence 44888887766543 688999999999999999999999999999999986666655554444444 68999999999
Q ss_pred CCCCC--------CCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 153 GIDVQ--------QVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 153 Gvdi~--------~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
|.||. +--+||-...|.|...-.|..||+||.|.+|.+.+|++-+|.
T Consensus 629 GTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 629 GTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred CcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 99984 233788888999999999999999999999999999988653
No 126
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.10 E-value=6.5e-10 Score=102.48 Aligned_cols=108 Identities=21% Similarity=0.366 Sum_probs=88.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----------------------------C-------------CeEEEecCCCCHH
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK----------------------------E-------------FTVSAMHGDMDQN 127 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~----------------------------~-------------~~~~~~~g~~~~~ 127 (224)
+.-++|+|+-+++.|+..+..+... + -+++++|+|+-+.
T Consensus 378 ~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~ 457 (1041)
T COG4581 378 NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPA 457 (1041)
T ss_pred cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchH
Confidence 3468999999999999999877421 1 1367899999999
Q ss_pred HHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEE----EeC----CCCChhHHHHHHhhccCCCC--cceEEEEecc
Q psy1621 128 ARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI----NYD----LPSNRENYIHRIGRGGRFGR--KGVAINFVTA 196 (224)
Q Consensus 128 ~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi----~~~----~p~s~~~~~q~~GR~~R~g~--~~~~~~~~~~ 196 (224)
.|..+.+.|..|-.+|+++|..++.|+|.|.-+.|+ .++ .+-++..|.|+.|||||.|. .|.+++....
T Consensus 458 ~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 458 IKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred HHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 999999999999999999999999999999877665 343 34578899999999999995 4666666443
No 127
>KOG1123|consensus
Probab=99.09 E-value=2.3e-09 Score=91.03 Aligned_cols=134 Identities=16% Similarity=0.236 Sum_probs=104.1
Q ss_pred EEEecCCccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc-CCceEE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS-GSSRVL 144 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~-~~~~il 144 (224)
..++-++. |+.+..-+++-+ +++++|||..++-.....+-.| +. -+++|..++.||.++++.|+. ..++-+
T Consensus 520 lLyvMNP~-KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~K--pfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 520 LLYVMNPN-KFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred eeeecCcc-hhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---CC--ceEECCCchhHHHHHHHhcccCCccceE
Confidence 34444444 888888877643 7899999998877666655555 32 478999999999999999984 577889
Q ss_pred EEcCCcccCCCCCCCCEEEEeCCC-CChhHHHHHHhhccCCCC------cceEEEEeccccHHHHHHHHH
Q psy1621 145 ITTDLLARGIDVQQVSLVINYDLP-SNRENYIHRIGRGGRFGR------KGVAINFVTAEDKRTLKDTEQ 207 (224)
Q Consensus 145 v~t~~~~~Gvdi~~~~~vi~~~~p-~s~~~~~q~~GR~~R~g~------~~~~~~~~~~~~~~~~~~~~~ 207 (224)
+.+.+.-..+|+|.++++|++... .|..+--||.||.-|..+ ...-+.+++.+..++++...+
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKR 663 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKR 663 (776)
T ss_pred EEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhh
Confidence 999999999999999999987766 578888999999888642 345677788876666655443
No 128
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.03 E-value=4.5e-09 Score=98.11 Aligned_cols=122 Identities=19% Similarity=0.267 Sum_probs=106.1
Q ss_pred cHHHHHHHHh-ccC--CCC--cEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC--CceEEEEcC
Q psy1621 76 WKFDTLCDLY-GTL--SIT--QAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG--SSRVLITTD 148 (224)
Q Consensus 76 ~k~~~l~~ll-~~~--~~~--~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~--~~~ilv~t~ 148 (224)
.|...+.+++ ... .+. ++++|+......+.+...|...++....++|+++..+|...++.|.++ ...+++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4788888877 333 455 999999999999999999999998899999999999999999999986 446788888
Q ss_pred CcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcce--EEEEeccc
Q psy1621 149 LLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV--AINFVTAE 197 (224)
Q Consensus 149 ~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~--~~~~~~~~ 197 (224)
+++.|+|+..+++|+++|++|++....|...|+.|.|+... ++-++..+
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 99999999999999999999999999999999999998665 44455444
No 129
>KOG0926|consensus
Probab=98.96 E-value=2e-09 Score=95.71 Aligned_cols=80 Identities=14% Similarity=0.288 Sum_probs=66.7
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCC------------------CChhHHHHHH
Q psy1621 117 VSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP------------------SNRENYIHRI 178 (224)
Q Consensus 117 ~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p------------------~s~~~~~q~~ 178 (224)
+..+++-++.++..++++.--.|..-++|+|++++..+.||++.+||+.+.- .|-.+--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 6677778888888888888878888899999999999999999999976622 2455568999
Q ss_pred hhccCCCCcceEEEEeccc
Q psy1621 179 GRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 179 GR~~R~g~~~~~~~~~~~~ 197 (224)
|||||.| .|+||-+++..
T Consensus 687 GRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 687 GRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccCCCC-CCceeehhhhH
Confidence 9999986 89999988764
No 130
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.96 E-value=2e-08 Score=93.64 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=85.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCC--CeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCC--EEEE
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKE--FTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVS--LVIN 164 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~--~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~--~vi~ 164 (224)
.++++|||++|.+..+.++..|.... .+...+..+.. ..|.+++++|++++..||++|+.+.+|||+|+.. .||+
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 45799999999999999999997521 12223333333 4688899999999999999999999999999865 5677
Q ss_pred eCCCCC------------------------------hhHHHHHHhhccCCCCcceEEEEeccc--cHHHHHHHHHHh
Q psy1621 165 YDLPSN------------------------------RENYIHRIGRGGRFGRKGVAINFVTAE--DKRTLKDTEQFY 209 (224)
Q Consensus 165 ~~~p~s------------------------------~~~~~q~~GR~~R~g~~~~~~~~~~~~--~~~~~~~~~~~~ 209 (224)
...|.. ...+.|.+||.-|..++.-++++++.. ...+-+.+-+.+
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 776642 122678899999987654455555554 334444554443
No 131
>KOG1000|consensus
Probab=98.92 E-value=4.7e-09 Score=88.99 Aligned_cols=121 Identities=17% Similarity=0.282 Sum_probs=105.2
Q ss_pred HHHHHHHHhccC------CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC-CceE-EEEcC
Q psy1621 77 KFDTLCDLYGTL------SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG-SSRV-LITTD 148 (224)
Q Consensus 77 k~~~l~~ll~~~------~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~-~~~i-lv~t~ 148 (224)
|...+.+.+..+ ++.+.+||+.-....+.+...+.+.+.+...+.|..+..+|...-+.|+.+ +..| +++-.
T Consensus 473 K~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsIt 552 (689)
T KOG1000|consen 473 KAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSIT 552 (689)
T ss_pred ccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEe
Confidence 777777777652 578999999999999999999999999999999999999999999999865 5554 56678
Q ss_pred CcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcce--EEEEeccc
Q psy1621 149 LLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV--AINFVTAE 197 (224)
Q Consensus 149 ~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~--~~~~~~~~ 197 (224)
+++.|+++..++.|++...+|++.-.+|.-.|++|.|+.+- +++++.+.
T Consensus 553 A~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKg 603 (689)
T KOG1000|consen 553 AAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKG 603 (689)
T ss_pred ecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecC
Confidence 99999999999999999999999999999999999998643 45555555
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.91 E-value=1.8e-08 Score=91.51 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=63.2
Q ss_pred CccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCC--CHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 74 EDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDM--DQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~--~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
...|..++.+-+... .+.|+||-|.|.+..+.+++.|.+.+++..++++.. ...|...+-++-+.| .|-|||++
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~G--~VTIATNM 483 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKG--SITIATNM 483 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCCC--cEEEeccc
Confidence 334888777655433 689999999999999999999999999999999974 244544444433333 68999999
Q ss_pred cccCCCC
Q psy1621 150 LARGIDV 156 (224)
Q Consensus 150 ~~~Gvdi 156 (224)
+|+|.||
T Consensus 484 AGRGTDI 490 (870)
T CHL00122 484 AGRGTDI 490 (870)
T ss_pred cCCCcCe
Confidence 9999997
No 133
>KOG0920|consensus
Probab=98.86 E-value=4.8e-09 Score=95.87 Aligned_cols=108 Identities=19% Similarity=0.361 Sum_probs=93.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC-------CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCE
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK-------EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSL 161 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~ 161 (224)
..+.+|||.+.......+.+.|... .+-+..+|+.|+..+.+.+...--.|..+|+++|++++.+|.|+++-+
T Consensus 412 ~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvy 491 (924)
T KOG0920|consen 412 FEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVY 491 (924)
T ss_pred CCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEE
Confidence 4789999999999999999988642 356889999999999999999998999999999999999999999999
Q ss_pred EEEeC------------------CCCChhHHHHHHhhccCCCCcceEEEEeccc
Q psy1621 162 VINYD------------------LPSNRENYIHRIGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 162 vi~~~------------------~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~ 197 (224)
||+.+ .+.|...-.||.|||||- ..|.||-+++..
T Consensus 492 VIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 492 VIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred EEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 99655 122566679999999997 799999998775
No 134
>KOG1002|consensus
Probab=98.86 E-value=1.7e-08 Score=85.82 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=104.9
Q ss_pred HHHHHHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCc-e-EEEEcCCc
Q psy1621 77 KFDTLCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSS-R-VLITTDLL 150 (224)
Q Consensus 77 k~~~l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~-~-ilv~t~~~ 150 (224)
|+++|.+-+.- -..-+.|||..-.+..+.+.-.|.+.|+.+.-+.|+|++..|...++.|++... + .|++-.+.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 88888764432 245689999999999999999999999999999999999999999999998744 3 57778899
Q ss_pred ccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCc--ceEEEEeccc
Q psy1621 151 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRK--GVAINFVTAE 197 (224)
Q Consensus 151 ~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~--~~~~~~~~~~ 197 (224)
|..+|+..+++|++.|++|++..-+|...|..|.|+. -.++-|+.++
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 9999999999999999999999999999999999974 4566666665
No 135
>KOG0386|consensus
Probab=98.84 E-value=1.9e-08 Score=91.28 Aligned_cols=121 Identities=21% Similarity=0.297 Sum_probs=107.8
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCc---eEEEEcCC
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSS---RVLITTDL 149 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~---~ilv~t~~ 149 (224)
..|+++|..++..+ .+++++.||.-+.-.+.+..+|.-.++....+.|....++|-..++.|+.... .+|.+|-+
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 44999999888766 58999999999999999999998889999999999999999999999997755 47889999
Q ss_pred cccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEec
Q psy1621 150 LARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVT 195 (224)
Q Consensus 150 ~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~ 195 (224)
.+.|+|+.-++.||+||..|++....|+-.|+.|.|+...|.++..
T Consensus 789 gglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 789 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred cccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 9999999999999999999999999999999999997665554443
No 136
>KOG1015|consensus
Probab=98.79 E-value=3.3e-08 Score=89.51 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=107.0
Q ss_pred CccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHh----------------------CCCeEEEecCCCCHHHH
Q psy1621 74 EDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLK----------------------KEFTVSAMHGDMDQNAR 129 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~----------------------~~~~~~~~~g~~~~~~r 129 (224)
...|+-+|+++++.. -+++.|||..+-...+.+..+|.- .|.....+.|+....+|
T Consensus 1124 ~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R 1203 (1567)
T KOG1015|consen 1124 HSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSR 1203 (1567)
T ss_pred cCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHH
Confidence 445899999999754 578999999999999998888843 14567889999999999
Q ss_pred HHHHHHhhcCCc----eEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEecc
Q psy1621 130 DVIMRQFRSGSS----RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTA 196 (224)
Q Consensus 130 ~~~~~~f~~~~~----~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~ 196 (224)
....+.|+.... ..||+|.+.+.|+|+-.++.||+||..|++.--.|.+=|++|.|+...||+|-.-
T Consensus 1204 ~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfi 1274 (1567)
T KOG1015|consen 1204 KKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFI 1274 (1567)
T ss_pred HHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhh
Confidence 999999987644 3899999999999999999999999999999999999999999998888877554
No 137
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.78 E-value=3.5e-08 Score=74.45 Aligned_cols=112 Identities=19% Similarity=0.304 Sum_probs=75.3
Q ss_pred HHhccCCCCcEEEEeCchHHHHHHHHHHHhCCC--eEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC--CcccCCCCCC
Q psy1621 83 DLYGTLSITQAVIFCNTRRKVDWLTESMLKKEF--TVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD--LLARGIDVQQ 158 (224)
Q Consensus 83 ~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~--~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~--~~~~Gvdi~~ 158 (224)
++++.. ++.+|||++|.+..+.+.+.+..... .+..+.. ...++.++++.|++++..||+++. .+.+|+|+++
T Consensus 3 ~l~~~~-~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAV-PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCC-SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcC-CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 444443 48999999999999999999876531 1122222 245678899999999999999999 9999999997
Q ss_pred --CCEEEEeCCCCC-h-----------------------------hHHHHHHhhccCCCCcceEEEEeccc
Q psy1621 159 --VSLVINYDLPSN-R-----------------------------ENYIHRIGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 159 --~~~vi~~~~p~s-~-----------------------------~~~~q~~GR~~R~g~~~~~~~~~~~~ 197 (224)
++.||..+.|.. + ....|.+||+-|..++--++++++..
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 678999888852 1 11578899999987665555555553
No 138
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.76 E-value=4.6e-08 Score=89.29 Aligned_cols=133 Identities=20% Similarity=0.346 Sum_probs=100.7
Q ss_pred CcccccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCc---hH
Q psy1621 25 ARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNT---RR 101 (224)
Q Consensus 25 ~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t---~~ 101 (224)
.-+.+..|||..+.-. ...+.+.-+.+.+.-.....+|+.+.|...+ -.+.+.++++.+. .-+|||+++ ++
T Consensus 276 ~g~LvvsSATg~~rg~-R~~LfReLlgFevG~~~~~LRNIvD~y~~~~----~~e~~~elvk~lG-~GgLIfV~~d~G~e 349 (1187)
T COG1110 276 LGILVVSSATGKPRGS-RLKLFRELLGFEVGSGGEGLRNIVDIYVESE----SLEKVVELVKKLG-DGGLIFVPIDYGRE 349 (1187)
T ss_pred CceEEEeeccCCCCCc-hHHHHHHHhCCccCccchhhhheeeeeccCc----cHHHHHHHHHHhC-CCeEEEEEcHHhHH
Confidence 3466789999866421 2334444555554444455667777766662 4555666666654 378999999 99
Q ss_pred HHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC----CcccCCCCCC-CCEEEEeCCC
Q psy1621 102 KVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD----LLARGIDVQQ-VSLVINYDLP 168 (224)
Q Consensus 102 ~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~----~~~~Gvdi~~-~~~vi~~~~p 168 (224)
-++.++++|+.+|+++..+|++ +++.++.|..|++++||... ++-+|+|+|+ +.++|+++.|
T Consensus 350 ~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 350 KAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9999999999999999999995 36779999999999999864 7999999998 6899999999
No 139
>KOG0949|consensus
Probab=98.71 E-value=5e-08 Score=88.58 Aligned_cols=81 Identities=26% Similarity=0.383 Sum_probs=70.1
Q ss_pred eEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCC-CChhHHHHHHhhccCCCC--cceEEE
Q psy1621 116 TVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP-SNRENYIHRIGRGGRFGR--KGVAIN 192 (224)
Q Consensus 116 ~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p-~s~~~~~q~~GR~~R~g~--~~~~~~ 192 (224)
+++++|+++...+|..+.--|+.|...||+||..++.|||.|.-++|+--|.- -++-.|.||+|||||.|- .|.|++
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~F 1043 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVF 1043 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEE
Confidence 47899999999999999999999999999999999999999987777665533 478899999999999994 577777
Q ss_pred Eecc
Q psy1621 193 FVTA 196 (224)
Q Consensus 193 ~~~~ 196 (224)
+-.+
T Consensus 1044 mgiP 1047 (1330)
T KOG0949|consen 1044 MGIP 1047 (1330)
T ss_pred EeCc
Confidence 6544
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.71 E-value=1.4e-07 Score=85.94 Aligned_cols=82 Identities=15% Similarity=0.256 Sum_probs=64.2
Q ss_pred CccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCC-CC-HHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 74 EDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGD-MD-QNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~-~~-~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
...|..++.+-+.+. .+.|+||-+.|++..+.+++.|.+.|+...++++. .. ..|...+.++-+.| .|-|||++
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIATNM 498 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIATNM 498 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCCC--cEEEeccC
Confidence 344888888766543 78999999999999999999999999999999997 22 44444444433333 68999999
Q ss_pred cccCCCCC
Q psy1621 150 LARGIDVQ 157 (224)
Q Consensus 150 ~~~Gvdi~ 157 (224)
+|+|-||.
T Consensus 499 AGRGTDIk 506 (939)
T PRK12902 499 AGRGTDII 506 (939)
T ss_pred CCCCcCEe
Confidence 99998873
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.71 E-value=1.7e-07 Score=88.10 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=86.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC--eEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCC--CEEEE
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF--TVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQV--SLVIN 164 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~--~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~--~~vi~ 164 (224)
.+++++|+++|.+..+.+++.|..... ....+.=+++...|.+++++|++++..||++|..+.+|||+|+- ++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975422 12222223333457889999999888999999999999999984 78888
Q ss_pred eCCCCC-h-----------------------------hHHHHHHhhccCCCCcceEEEEeccc--cHHHHHHHHHHh
Q psy1621 165 YDLPSN-R-----------------------------ENYIHRIGRGGRFGRKGVAINFVTAE--DKRTLKDTEQFY 209 (224)
Q Consensus 165 ~~~p~s-~-----------------------------~~~~q~~GR~~R~g~~~~~~~~~~~~--~~~~~~~~~~~~ 209 (224)
...|.. + ..+.|.+||.-|..++.-++++++.. ...+-+.+-+.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 776652 1 12588899999987654455555554 444445555543
No 142
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.70 E-value=1.6e-06 Score=74.16 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=132.9
Q ss_pred ccCcccccccccccHhhhhhhhhhHHHhhhhh------------hhccCcccceeEEEEEecC------CccHHHHHHH-
Q psy1621 23 VGARIGAGFNADINVEACADVDVNAAELRRRV------------LIVGDSMTRIRQFYIYIER------EDWKFDTLCD- 83 (224)
Q Consensus 23 ~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~------------~i~~~~~~~i~~~~~~~~~------~~~k~~~l~~- 83 (224)
+.-+|++++|+...++..+.+.. ...+.. .........++|.+..++. .+.+++...+
T Consensus 213 ~~~RQtii~S~~~~pe~~slf~~---~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 213 KYYRQTIIFSSFQTPEINSLFNR---HCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred hheeEeEEecCCCCHHHHHHHHh---hCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 34599999999999987665552 111111 1112334567777776543 2335544433
Q ss_pred Hh---c-cCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC--cccCCCCC
Q psy1621 84 LY---G-TLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL--LARGIDVQ 157 (224)
Q Consensus 84 ll---~-~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~--~~~Gvdi~ 157 (224)
++ . ......+|||++|--.=-.+.++|++.++..+.+|.-.++.+-.+.-..|..|+.+||+.|-= .=+-..|.
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 22 2 334578999999999988999999999999999999999999999999999999999999973 44556678
Q ss_pred CCCEEEEeCCCCChhHHHHHHhhccCCCC------cceEEEEeccccHHHHHHH
Q psy1621 158 QVSLVINYDLPSNRENYIHRIGRGGRFGR------KGVAINFVTAEDKRTLKDT 205 (224)
Q Consensus 158 ~~~~vi~~~~p~s~~~~~q~~GR~~R~g~------~~~~~~~~~~~~~~~~~~~ 205 (224)
++.+||+|++|..+.-|...++-.+.... ...|.++++.-|...+.+|
T Consensus 370 Gi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred CCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 89999999999999999888876655433 5789999988766655544
No 143
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.68 E-value=3.9e-07 Score=82.93 Aligned_cols=105 Identities=15% Similarity=0.213 Sum_probs=79.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCCHHHHHHHHHHhhcCCc-eEEEEcCCcccCCCCCCC--CEEEE
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMDQNARDVIMRQFRSGSS-RVLITTDLLARGIDVQQV--SLVIN 164 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~~~~r~~~~~~f~~~~~-~ilv~t~~~~~Gvdi~~~--~~vi~ 164 (224)
.+++++||++|.+..+.+++.+...... ....+|..+. ...++.|+.+.- .++|+|..+.+|||+|+- +.||+
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 3459999999999999999999776542 3445555444 477888887655 899999999999999974 77888
Q ss_pred eCCCCC------------------------------hhHHHHHHhhccCCCCcceEEEEecc
Q psy1621 165 YDLPSN------------------------------RENYIHRIGRGGRFGRKGVAINFVTA 196 (224)
Q Consensus 165 ~~~p~s------------------------------~~~~~q~~GR~~R~g~~~~~~~~~~~ 196 (224)
.+.|+. .....|.+||+-|..++.-++++++.
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 887753 22378999999997655555555554
No 144
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.61 E-value=2.5e-07 Score=83.08 Aligned_cols=94 Identities=22% Similarity=0.442 Sum_probs=77.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCC-----CeEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCcccCCCCCCCCEE
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKE-----FTVSAMHGDMDQNARDVIMRQFRS--GSSRVLITTDLLARGIDVQQVSLV 162 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~-----~~~~~~~g~~~~~~r~~~~~~f~~--~~~~ilv~t~~~~~Gvdi~~~~~v 162 (224)
.+++||||.+..+|+.+.+.|.+.. --+..++|+... -+..++.|.. .-.+|.++.+++..|+|+|.+-++
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 5799999999999999999997752 346667776544 3445666654 344799999999999999999999
Q ss_pred EEeCCCCChhHHHHHHhhccCCC
Q psy1621 163 INYDLPSNRENYIHRIGRGGRFG 185 (224)
Q Consensus 163 i~~~~p~s~~~~~q~~GR~~R~g 185 (224)
+++..-.|...|.||+||+-|..
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred eehhhhhhHHHHHHHhcCccccC
Confidence 99999999999999999998864
No 145
>KOG4439|consensus
Probab=98.59 E-value=4.1e-07 Score=80.25 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=99.8
Q ss_pred CCccHHHHHHHHhccC---CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc--CCce-EEEE
Q psy1621 73 REDWKFDTLCDLYGTL---SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS--GSSR-VLIT 146 (224)
Q Consensus 73 ~~~~k~~~l~~ll~~~---~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~--~~~~-ilv~ 146 (224)
....|+.-+.+.+... ...+++|...=.+....+..+|.+.|.....+||.....+|..+++.|+. |..+ .|++
T Consensus 726 r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlS 805 (901)
T KOG4439|consen 726 RPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLS 805 (901)
T ss_pred cchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEE
Confidence 3444777777666544 45677766666666788888999999999999999999999999999974 4344 5666
Q ss_pred cCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEE
Q psy1621 147 TDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINF 193 (224)
Q Consensus 147 t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~ 193 (224)
-.+.|.|+|+.+.+|+|..|+.|++.--.|.+.|..|.|+...|++.
T Consensus 806 LtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 806 LTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred EccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 78999999999999999999999999999999999999988776654
No 146
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.57 E-value=1.1e-06 Score=80.19 Aligned_cols=105 Identities=17% Similarity=0.324 Sum_probs=75.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCcccCCCCCC--CCE
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK-EFTVSAMHGDMDQNARDVIMRQFRS----GSSRVLITTDLLARGIDVQQ--VSL 161 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~r~~~~~~f~~----~~~~ilv~t~~~~~Gvdi~~--~~~ 161 (224)
.++.++||++|.+..+.+++.|... +.. ...+|.. .+..+++.|++ ++..||++|..+.+|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3445899999999999999998643 333 3445642 46677877764 67789999999999999997 678
Q ss_pred EEEeCCCCC----h--------------------------hHHHHHHhhccCCCCcceEEEEeccc
Q psy1621 162 VINYDLPSN----R--------------------------ENYIHRIGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 162 vi~~~~p~s----~--------------------------~~~~q~~GR~~R~g~~~~~~~~~~~~ 197 (224)
||+...|.. + ..+.|.+||.-|..++.-++++++..
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 988887742 1 12578889999986554445555543
No 147
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.51 E-value=2.5e-06 Score=77.72 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=74.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC-----CCeEEEecCCCCHH---------------------HHHHHHHHhhc-CCce
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK-----EFTVSAMHGDMDQN---------------------ARDVIMRQFRS-GSSR 142 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~---------------------~r~~~~~~f~~-~~~~ 142 (224)
+.+++|||.++..|..+++.|.+. +.....++++.+.+ ....++++|+. +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 489999999999999999988665 23445566554332 22468889976 5789
Q ss_pred EEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCC
Q psy1621 143 VLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRF 184 (224)
Q Consensus 143 ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~ 184 (224)
|||+++.+..|+|.|.+++++..-+..+. .++|++||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999998877765554 589999999994
No 148
>KOG0925|consensus
Probab=98.51 E-value=8.3e-07 Score=75.55 Aligned_cols=161 Identities=15% Similarity=0.247 Sum_probs=103.5
Q ss_pred CcccccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHHH----HhccCCCCcEEEEeCch
Q psy1621 25 ARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCD----LYGTLSITQAVIFCNTR 100 (224)
Q Consensus 25 ~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~----ll~~~~~~~~iIf~~t~ 100 (224)
.--.+.+|||....- +. .++.++..+..+-...++.+|-.-...+ .+++..+ +......+.+++|...-
T Consensus 191 dLk~vvmSatl~a~K-----fq-~yf~n~Pll~vpg~~PvEi~Yt~e~erD-ylEaairtV~qih~~ee~GDilvFLtge 263 (699)
T KOG0925|consen 191 DLKLVVMSATLDAEK-----FQ-RYFGNAPLLAVPGTHPVEIFYTPEPERD-YLEAAIRTVLQIHMCEEPGDILVFLTGE 263 (699)
T ss_pred CceEEEeecccchHH-----HH-HHhCCCCeeecCCCCceEEEecCCCChh-HHHHHHHHHHHHHhccCCCCEEEEecCH
Confidence 334567888875542 22 3333333332222344554444333333 4444333 32222578899999998
Q ss_pred HHHHHHHHHHHhC---------CCeEEEecCCCCHHHHHHHHHHhh---cC--CceEEEEcCCcccCCCCCCCCEEEEeC
Q psy1621 101 RKVDWLTESMLKK---------EFTVSAMHGDMDQNARDVIMRQFR---SG--SSRVLITTDLLARGIDVQQVSLVINYD 166 (224)
Q Consensus 101 ~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~---~~--~~~ilv~t~~~~~Gvdi~~~~~vi~~~ 166 (224)
++.+...+.+... .+.+..+| +.+...+++... +| ..+|+|+|++++..+.++++.+||+-+
T Consensus 264 eeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpG 339 (699)
T KOG0925|consen 264 EEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPG 339 (699)
T ss_pred HHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCc
Confidence 8888877776532 34678888 444444444332 12 236999999999999999999999655
Q ss_pred ------------------CCCChhHHHHHHhhccCCCCcceEEEEeccc
Q psy1621 167 ------------------LPSNRENYIHRIGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 167 ------------------~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~ 197 (224)
.|.|-.+-.||.||+||. ..|.|+.++++.
T Consensus 340 f~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 340 FSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred hhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 456777888999999986 689999998764
No 149
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.44 E-value=1.7e-06 Score=78.33 Aligned_cols=105 Identities=22% Similarity=0.378 Sum_probs=80.0
Q ss_pred HHHHHHHHHhC--CCeEEEecCCCCH--HHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCC---------
Q psy1621 103 VDWLTESMLKK--EFTVSAMHGDMDQ--NARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPS--------- 169 (224)
Q Consensus 103 ~~~l~~~L~~~--~~~~~~~~g~~~~--~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~--------- 169 (224)
++.+.+.|.+. +.++..+.++... ..-+..++.|.+|+.+|||.|+++..|.|+|+++.|...+...
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA 572 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRA 572 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcch
Confidence 45666666554 5577777777654 3356789999999999999999999999999999877555332
Q ss_pred ---ChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHH
Q psy1621 170 ---NRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQ 207 (224)
Q Consensus 170 ---s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 207 (224)
+...+.|-+||+||.+..|.+++-....+...++.+..
T Consensus 573 ~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 573 SERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 24557889999999999999998887777555554443
No 150
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.41 E-value=7.7e-06 Score=76.02 Aligned_cols=119 Identities=14% Similarity=0.148 Sum_probs=84.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC--CCEEEEeC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQ--VSLVINYD 166 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~--~~~vi~~~ 166 (224)
.+++++|+++|.+..+.+++.|......+ ...|... .+.+++++|++++..||++|..+.+|||+|+ ...+|+..
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~k 722 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITR 722 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEec
Confidence 46899999999999999999997654444 4445322 2456899999988899999999999999974 45566666
Q ss_pred CCCC------------------------------hhHHHHHHhhccCCCCcceEEEEeccc--cHHHHHHHHHHhc
Q psy1621 167 LPSN------------------------------RENYIHRIGRGGRFGRKGVAINFVTAE--DKRTLKDTEQFYN 210 (224)
Q Consensus 167 ~p~s------------------------------~~~~~q~~GR~~R~g~~~~~~~~~~~~--~~~~~~~~~~~~~ 210 (224)
.|.. ...+.|.+||.-|...+.-++++++.. .+.+-+.+-+.+.
T Consensus 723 LPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 723 LPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCC
Confidence 5532 122789999999987543345555553 4444555555544
No 151
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.40 E-value=4.7e-07 Score=82.12 Aligned_cols=124 Identities=20% Similarity=0.269 Sum_probs=98.6
Q ss_pred CCccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q psy1621 73 REDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLL 150 (224)
Q Consensus 73 ~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~ 150 (224)
+...|..++.+-+... .++|+||-+.+.+..+.+.+.|.+.++.-.+++++....|-+.+...-+.| .|-|||+++
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMA 487 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMA 487 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCCC--ccccccccc
Confidence 3445888888777543 789999999999999999999999999999999998876666665555544 577899999
Q ss_pred ccCCCCCCCC-----------EEEEeCCCCChhHHHHHHhhccCCCCcceEEEEecccc
Q psy1621 151 ARGIDVQQVS-----------LVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAED 198 (224)
Q Consensus 151 ~~Gvdi~~~~-----------~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 198 (224)
++|-||.-.. +||--....|..--.|..||+||.|..|...+|++-.|
T Consensus 488 GRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 488 GRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred cCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 9999984222 45555566677767799999999999999888877653
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.29 E-value=1.3e-05 Score=73.54 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=76.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-------eEEEecCCCCHHHHHHHHHHhhc----CCceEEEEc--CCcccCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-------TVSAMHGDMDQNARDVIMRQFRS----GSSRVLITT--DLLARGID 155 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~r~~~~~~f~~----~~~~ilv~t--~~~~~Gvd 155 (224)
.++.+|||++|-+..+.+++.+.+.+. ...++-+. ...++..++++|+. ++-.||+++ .-+++|||
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 458899999999999999888765421 12222222 22577889999964 455699998 78999999
Q ss_pred CCC--CCEEEEeCCCC-Ch------------------------------hHHHHHHhhccCCCCcceEEEEecc
Q psy1621 156 VQQ--VSLVINYDLPS-NR------------------------------ENYIHRIGRGGRFGRKGVAINFVTA 196 (224)
Q Consensus 156 i~~--~~~vi~~~~p~-s~------------------------------~~~~q~~GR~~R~g~~~~~~~~~~~ 196 (224)
+++ ++.||..+.|. ++ ....|.+||+=|..++--++++++.
T Consensus 600 f~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~ 673 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDK 673 (705)
T ss_pred cCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEeh
Confidence 997 68899999886 21 1246889999998765445555544
No 153
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.02 E-value=7.6e-05 Score=54.57 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=38.8
Q ss_pred EecCCCCHHHHHHHHHHhhcCC-ceEEEEcCCcccCCCCCC--CCEEEEeCCCC
Q psy1621 119 AMHGDMDQNARDVIMRQFRSGS-SRVLITTDLLARGIDVQQ--VSLVINYDLPS 169 (224)
Q Consensus 119 ~~~g~~~~~~r~~~~~~f~~~~-~~ilv~t~~~~~Gvdi~~--~~~vi~~~~p~ 169 (224)
.+.-+....+...+++.|+... ..||+++.-+.+|+|+|+ ++.||..+.|.
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3444455556788999998764 379999988999999997 46788888774
No 154
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.99 E-value=5.8e-05 Score=55.26 Aligned_cols=92 Identities=14% Similarity=0.235 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCC---eEEEecCCCCHHHHHHHHHHhhcCCc---eEEEEcCC--cccCCCCCC--CCEEEEeCCCCC--
Q psy1621 103 VDWLTESMLKKEF---TVSAMHGDMDQNARDVIMRQFRSGSS---RVLITTDL--LARGIDVQQ--VSLVINYDLPSN-- 170 (224)
Q Consensus 103 ~~~l~~~L~~~~~---~~~~~~g~~~~~~r~~~~~~f~~~~~---~ilv~t~~--~~~Gvdi~~--~~~vi~~~~p~s-- 170 (224)
.+.+++.+.+.+. ....+.-+....+..++++.|++... .||+++.- +.+|||+|+ ++.||..+.|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3445555554432 12223322223345778888987544 68888877 999999998 578888887742
Q ss_pred --h---------------------------hHHHHHHhhccCCCCcceEEEEe
Q psy1621 171 --R---------------------------ENYIHRIGRGGRFGRKGVAINFV 194 (224)
Q Consensus 171 --~---------------------------~~~~q~~GR~~R~g~~~~~~~~~ 194 (224)
+ ....|.+||+-|..++--+++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~ 136 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLL 136 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEE
Confidence 1 11568889998876554444444
No 155
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.98 E-value=0.0001 Score=66.33 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=72.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC----CceEEEEcCCcccCCCC--------
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG----SSRVLITTDLLARGIDV-------- 156 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~----~~~ilv~t~~~~~Gvdi-------- 156 (224)
.++.++|.+.|.+..+.+++.|...-.....+.|..+ .+...+++|+.. +..||++|..+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4568888899999999999998664323345566543 356678888874 78999999999999999
Q ss_pred CC--CCEEEEeCCCCCh-------------------------hHHHHHHhhccCCCCc
Q psy1621 157 QQ--VSLVINYDLPSNR-------------------------ENYIHRIGRGGRFGRK 187 (224)
Q Consensus 157 ~~--~~~vi~~~~p~s~-------------------------~~~~q~~GR~~R~g~~ 187 (224)
|+ +++||+...|+.+ ..+.|.+||.=|...+
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D 604 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDM 604 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCC
Confidence 33 7889887777432 1267888998887654
No 156
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.81 E-value=0.00016 Score=66.90 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=31.3
Q ss_pred CccHHHHHHHHhccC-----------CCCcEEEEeCchHHHHHHHHHHHh
Q psy1621 74 EDWKFDTLCDLYGTL-----------SITQAVIFCNTRRKVDWLTESMLK 112 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~-----------~~~~~iIf~~t~~~~~~l~~~L~~ 112 (224)
+..|+..|.+++.+. +++++||||+...+|..+.++|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 345999888888542 346799999999999999998855
No 157
>COG4889 Predicted helicase [General function prediction only]
Probab=97.76 E-value=3.1e-05 Score=70.51 Aligned_cols=95 Identities=21% Similarity=0.372 Sum_probs=74.1
Q ss_pred CcEEEEeCchHHHHHHHHHHHh-----------C--CC--eEEEecCCCCHHHHHHHHHH---hhcCCceEEEEcCCccc
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLK-----------K--EF--TVSAMHGDMDQNARDVIMRQ---FRSGSSRVLITTDLLAR 152 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~-----------~--~~--~~~~~~g~~~~~~r~~~~~~---f~~~~~~ilv~t~~~~~ 152 (224)
.+.|-||.+.++...+++.+.. . ++ .+.-+.|.|.-.+|...+.. |...+.+||--..++.+
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 4788899988888777775532 1 33 44555688998888554443 33456678877889999
Q ss_pred CCCCCCCCEEEEeCCCCChhHHHHHHhhccCCC
Q psy1621 153 GIDVQQVSLVINYDLPSNRENYIHRIGRGGRFG 185 (224)
Q Consensus 153 Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g 185 (224)
|||+|..+.||++++-.+..+..|.+||+.|..
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999974
No 158
>KOG1016|consensus
Probab=97.74 E-value=0.00014 Score=65.48 Aligned_cols=124 Identities=18% Similarity=0.222 Sum_probs=96.6
Q ss_pred HHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCC------------------CeEEEecCCCCHHHHHHHHHHh
Q psy1621 77 KFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKE------------------FTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 77 k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~------------------~~~~~~~g~~~~~~r~~~~~~f 136 (224)
|+..+.+++.+. -+.++|||..+....+.+.+.|.+.. .....+.|..+..+|++.+.+|
T Consensus 704 k~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqf 783 (1387)
T KOG1016|consen 704 KIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQF 783 (1387)
T ss_pred ceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhc
Confidence 333334444333 46799999999999888888886641 1234577888999999999999
Q ss_pred hcCC---ceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHH
Q psy1621 137 RSGS---SRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKR 200 (224)
Q Consensus 137 ~~~~---~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 200 (224)
++.. .-++++|.+...|||+.+.+.+++|+.-|++.--.|.+-|+.|.|+...|+++-.-.|..
T Consensus 784 N~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~ 850 (1387)
T KOG1016|consen 784 NSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNS 850 (1387)
T ss_pred cCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhh
Confidence 8642 247888999999999999999999999999999999999999999887777665554433
No 159
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.73 E-value=0.00017 Score=67.49 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=68.1
Q ss_pred EEEEeCchHHHHHHHHHHHhC------CCeEEEecCCCCHHHHHHHHHHh----------------------hc----CC
Q psy1621 93 AVIFCNTRRKVDWLTESMLKK------EFTVSAMHGDMDQNARDVIMRQF----------------------RS----GS 140 (224)
Q Consensus 93 ~iIf~~t~~~~~~l~~~L~~~------~~~~~~~~g~~~~~~r~~~~~~f----------------------~~----~~ 140 (224)
.+|-+++.+.+-.+++.|... .+.+.+||+......|..+++.. ++ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 566677778777888877554 23588899999877777666553 12 35
Q ss_pred ceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCC
Q psy1621 141 SRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGR 186 (224)
Q Consensus 141 ~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~ 186 (224)
..|+|+|++.+.|+|+ +.+.+| .-|.+..+.+|++||+.|.+.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 6799999999999998 444443 347778899999999999874
No 160
>KOG1001|consensus
Probab=97.59 E-value=1e-05 Score=73.07 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=101.9
Q ss_pred CccHHHHHHHHhccC--CC-CcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCc--eEEEEcC
Q psy1621 74 EDWKFDTLCDLYGTL--SI-TQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSS--RVLITTD 148 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~--~~-~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~--~ilv~t~ 148 (224)
...|+..+.+++... .. .+++||+.-...+..+...|...++....+.|.|+...|.+.+..|..+.. ..+++..
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slk 599 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLK 599 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHH
Confidence 445777777776533 22 489999999999999999998889999999999999999999999996544 2677889
Q ss_pred CcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEE
Q psy1621 149 LLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAIN 192 (224)
Q Consensus 149 ~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~ 192 (224)
+.+.|+|+..+++|+..|+.|++....|.+.|+.|.|+...+.+
T Consensus 600 ag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 600 AGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred HhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999999999999999999999998766554
No 161
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.50 E-value=0.00043 Score=56.02 Aligned_cols=78 Identities=21% Similarity=0.341 Sum_probs=57.6
Q ss_pred HHHHHhhcCCceEEEEcCCcccCCCCCC--------CCEEEEeCCCCChhHHHHHHhhccCCCCc-ceEEEEeccc---c
Q psy1621 131 VIMRQFRSGSSRVLITTDLLARGIDVQQ--------VSLVINYDLPSNRENYIHRIGRGGRFGRK-GVAINFVTAE---D 198 (224)
Q Consensus 131 ~~~~~f~~~~~~ilv~t~~~~~Gvdi~~--------~~~vi~~~~p~s~~~~~q~~GR~~R~g~~-~~~~~~~~~~---~ 198 (224)
...+.|.+|+..|+|-|.+++.|+.+.. -++-|...+|||....+|..||++|.++. ...+.++..+ +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4467899999999999999999998853 23556788999999999999999999974 3334333332 4
Q ss_pred HHHHHHHHHH
Q psy1621 199 KRTLKDTEQF 208 (224)
Q Consensus 199 ~~~~~~~~~~ 208 (224)
......+.+.
T Consensus 132 ~Rfas~va~r 141 (278)
T PF13871_consen 132 RRFASTVARR 141 (278)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 162
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.12 E-value=0.0074 Score=55.42 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=74.4
Q ss_pred EEEecCCccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHHHhhcCCceEE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKK-EFTVSAMHGDMDQNARDVIMRQFRSGSSRVL 144 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~il 144 (224)
.........|......++... .+.++||.+++++-+..+.+.|++. +..+..+||+++..+|.+.+.+..+|+.+|+
T Consensus 166 Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IV 245 (679)
T PRK05580 166 LLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVV 245 (679)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 333344455776665544322 4678999999999999999999774 7789999999999999999999999999999
Q ss_pred EEcCCcccCCCCCCCCEEEEeC
Q psy1621 145 ITTDLLARGIDVQQVSLVINYD 166 (224)
Q Consensus 145 v~t~~~~~Gvdi~~~~~vi~~~ 166 (224)
|+|.... -+.+.++..||..+
T Consensus 246 VgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 246 IGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred EeccHHh-cccccCCCEEEEEC
Confidence 9997432 24456677776544
No 163
>KOG0951|consensus
Probab=97.07 E-value=0.0039 Score=59.32 Aligned_cols=113 Identities=15% Similarity=0.284 Sum_probs=83.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----------------------CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK----------------------EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLIT 146 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~----------------------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~ 146 (224)
.+.+.+||+++++.|..++-.|... ....++-|.+++..+...+-..|..|.+.++|.
T Consensus 1358 ~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~ 1437 (1674)
T KOG0951|consen 1358 NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVM 1437 (1674)
T ss_pred CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEE
Confidence 4679999999999998887644220 122233388999999888999999999998888
Q ss_pred cCCcccCCCCCCCCEEE----EeC------CCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHH
Q psy1621 147 TDLLARGIDVQQVSLVI----NYD------LPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDT 205 (224)
Q Consensus 147 t~~~~~Gvdi~~~~~vi----~~~------~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 205 (224)
+.- ..|+-...--.|+ .|| .+.+....+||.|+|.| .|.|++++...++..++++
T Consensus 1438 s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1438 SRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred Ecc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 766 6776653322222 233 44567889999999988 7889999999888888765
No 164
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.05 E-value=0.0077 Score=55.38 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=74.3
Q ss_pred EEEEecCCccHHHHHH-HHhccC-CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCC
Q psy1621 67 FYIYIEREDWKFDTLC-DLYGTL-SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGS 140 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~-~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~ 140 (224)
.....+....|..... -++... .+.++++.++|+.-|...++.+++. ++++..+||+++..+|.++++.+.+|+
T Consensus 285 ~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~ 364 (681)
T PRK10917 285 RLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE 364 (681)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC
Confidence 3444444455655332 222222 4678999999999998888776553 689999999999999999999999999
Q ss_pred ceEEEEcCC-cccCCCCCCCCEEEEe
Q psy1621 141 SRVLITTDL-LARGIDVQQVSLVINY 165 (224)
Q Consensus 141 ~~ilv~t~~-~~~Gvdi~~~~~vi~~ 165 (224)
..|+|+|.. +...+++.++..||.-
T Consensus 365 ~~IvVgT~~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 365 ADIVIGTHALIQDDVEFHNLGLVIID 390 (681)
T ss_pred CCEEEchHHHhcccchhcccceEEEe
Confidence 999999985 4455777888877743
No 165
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.90 E-value=0.0091 Score=52.91 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=70.4
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKK-EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~ 151 (224)
..|......++... .+.++|+.+++..-+..+++.|++. +..+..+||+++..+|.+.+.+..+|+.+|+|+|...-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 34766655555332 4678999999999999999999764 67899999999999999999999999999999997532
Q ss_pred cCCCCCCCCEEEEeC
Q psy1621 152 RGIDVQQVSLVINYD 166 (224)
Q Consensus 152 ~Gvdi~~~~~vi~~~ 166 (224)
. ..+.++..||.-+
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 3456677666444
No 166
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.80 E-value=0.011 Score=54.42 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=77.4
Q ss_pred HHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 78 FDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 78 ~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
......+..++ .+..+-||++|.+.++.+++........+..++|..+..+. +.| ++.+|++-|++...|+++
T Consensus 269 ~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 269 TTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSF 342 (824)
T ss_pred hhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEecc
Confidence 34444555544 45677789999999999999999998899999887665522 222 356899999999999998
Q ss_pred CCC--CEEEEeCCC----CChhHHHHHHhhccCCCCcceEEEEecc
Q psy1621 157 QQV--SLVINYDLP----SNRENYIHRIGRGGRFGRKGVAINFVTA 196 (224)
Q Consensus 157 ~~~--~~vi~~~~p----~s~~~~~q~~GR~~R~g~~~~~~~~~~~ 196 (224)
... +-++-|=-| .+..+.+|++||+..-. ....+++++.
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 644 334433222 34557899999996543 4444444433
No 167
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.68 E-value=0.0097 Score=54.32 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=71.9
Q ss_pred cHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhC-C-CeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q psy1621 76 WKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKK-E-FTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151 (224)
Q Consensus 76 ~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~-~-~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~ 151 (224)
.|.+...+++... .++++||.++....+..+.+.|++. + ..+..+|+++++.+|.+.+.+..+|+.+|+|.|-.+-
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 4888888887654 5778999999999999999999865 3 5799999999999999999999999999999996432
Q ss_pred cCCCCCCCCEEEEeC
Q psy1621 152 RGIDVQQVSLVINYD 166 (224)
Q Consensus 152 ~Gvdi~~~~~vi~~~ 166 (224)
-.-+++...||..+
T Consensus 252 -FaP~~~LgLIIvdE 265 (665)
T PRK14873 252 -FAPVEDLGLVAIWD 265 (665)
T ss_pred -EeccCCCCEEEEEc
Confidence 12334555555444
No 168
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.62 E-value=0.021 Score=52.09 Aligned_cols=98 Identities=13% Similarity=0.178 Sum_probs=73.0
Q ss_pred EEEEecCCccHHHHH-HHHhccC-CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCC
Q psy1621 67 FYIYIEREDWKFDTL-CDLYGTL-SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGS 140 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l-~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~ 140 (224)
.....+....|.... .-++... .+.++++.++|+.-+...++.+++. ++++..+||+++..+|...++...+|+
T Consensus 259 ~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~ 338 (630)
T TIGR00643 259 RLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ 338 (630)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC
Confidence 344444445566433 2233222 4678999999999999888777653 689999999999999999999999999
Q ss_pred ceEEEEcCC-cccCCCCCCCCEEEE
Q psy1621 141 SRVLITTDL-LARGIDVQQVSLVIN 164 (224)
Q Consensus 141 ~~ilv~t~~-~~~Gvdi~~~~~vi~ 164 (224)
..|+|+|.. +...+++.++..||.
T Consensus 339 ~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 339 IHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCEEEecHHHHhccccccccceEEE
Confidence 999999986 444567777777664
No 169
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.0086 Score=54.88 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=68.5
Q ss_pred EEEecCCccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHHHhhcCCceEE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKK-EFTVSAMHGDMDQNARDVIMRQFRSGSSRVL 144 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~il 144 (224)
+..-.+.+.|.+...+++.+. .+.++||.++-.+-...+.+.++.. +.++..+|+++++.+|...+.+..+|+.+|+
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 333334455999988888765 6789999999988888888888765 7899999999999999999999999999999
Q ss_pred EEcC
Q psy1621 145 ITTD 148 (224)
Q Consensus 145 v~t~ 148 (224)
|.|-
T Consensus 301 IGtR 304 (730)
T COG1198 301 IGTR 304 (730)
T ss_pred EEec
Confidence 9986
No 170
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.01 Score=55.57 Aligned_cols=83 Identities=23% Similarity=0.222 Sum_probs=63.6
Q ss_pred EEEEecCCccHHH--HHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCC-----CeEEE-ecCCCCHHHHHHHHHHhhc
Q psy1621 67 FYIYIEREDWKFD--TLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKE-----FTVSA-MHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 67 ~~~~~~~~~~k~~--~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~-----~~~~~-~~g~~~~~~r~~~~~~f~~ 138 (224)
|-...+..-.|.. .+..++-...+.++++.++|..-+..+++.|.+.. ..+.. |||.++..+++.++++|.+
T Consensus 100 FaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~ 179 (1187)
T COG1110 100 FAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIES 179 (1187)
T ss_pred eEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhc
Confidence 3344444434554 44555556677899999999999999988887652 33333 9999999999999999999
Q ss_pred CCceEEEEcCC
Q psy1621 139 GSSRVLITTDL 149 (224)
Q Consensus 139 ~~~~ilv~t~~ 149 (224)
|..+|||+|+.
T Consensus 180 gdfdIlitTs~ 190 (1187)
T COG1110 180 GDFDILITTSQ 190 (1187)
T ss_pred CCccEEEEeHH
Confidence 99999999985
No 171
>KOG2340|consensus
Probab=96.49 E-value=0.032 Score=48.83 Aligned_cols=179 Identities=18% Similarity=0.191 Sum_probs=114.2
Q ss_pred cccccccccccHhhhhhhhhhHHH----hhhhhhhccCccc----ceeEEEEEe------cCCccHHHHHHH-HhccC--
Q psy1621 26 RIGAGFNADINVEACADVDVNAAE----LRRRVLIVGDSMT----RIRQFYIYI------EREDWKFDTLCD-LYGTL-- 88 (224)
Q Consensus 26 ~~~~~~sATi~~~~~~~~~~~~~~----l~~~~~i~~~~~~----~i~~~~~~~------~~~~~k~~~l~~-ll~~~-- 88 (224)
+|+++||+-..+..-+.+.-.-.. ++....+.+.... .+.|.+..+ ...+.+...... ++...
T Consensus 470 rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k 549 (698)
T KOG2340|consen 470 RQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIK 549 (698)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcc
Confidence 889999998888765444311111 1111111111211 222322221 223446665544 33333
Q ss_pred -CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC--cccCCCCCCCCEEEEe
Q psy1621 89 -SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL--LARGIDVQQVSLVINY 165 (224)
Q Consensus 89 -~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~--~~~Gvdi~~~~~vi~~ 165 (224)
...-+|||.++--.--.+-+++++..+....+|.-.+...-...-+-|-.|...+|+-|.- .-+-.+|.++..||+|
T Consensus 550 ~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfY 629 (698)
T KOG2340|consen 550 RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFY 629 (698)
T ss_pred cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEe
Confidence 2345799999988888899999988888777777766777777788899999999999874 5566789999999999
Q ss_pred CCCCChhHHHH---HHhhccCCC----CcceEEEEeccccHHHHHH
Q psy1621 166 DLPSNRENYIH---RIGRGGRFG----RKGVAINFVTAEDKRTLKD 204 (224)
Q Consensus 166 ~~p~s~~~~~q---~~GR~~R~g----~~~~~~~~~~~~~~~~~~~ 204 (224)
.+|.+|.=|.- +.+|+.-.| ....|.+++++-|.-.+..
T Consensus 630 qpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ 675 (698)
T KOG2340|consen 630 QPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLEN 675 (698)
T ss_pred cCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHH
Confidence 99998766544 555554333 3356888887765554443
No 172
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.34 E-value=0.039 Score=52.38 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=74.1
Q ss_pred EEEEecCCccHHHHHHH-Hhcc-CCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCC
Q psy1621 67 FYIYIEREDWKFDTLCD-LYGT-LSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGS 140 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~-ll~~-~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~ 140 (224)
..+..+....|...... ++.. ..+.+++|.++|+.-|...++.+.+. ++++..++|..+..++.++++.+++|+
T Consensus 475 ~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~ 554 (926)
T TIGR00580 475 RLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK 554 (926)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC
Confidence 44555555557654432 2222 24578999999999999988877653 568889999999999999999999999
Q ss_pred ceEEEEcCC-cccCCCCCCCCEEEE
Q psy1621 141 SRVLITTDL-LARGIDVQQVSLVIN 164 (224)
Q Consensus 141 ~~ilv~t~~-~~~Gvdi~~~~~vi~ 164 (224)
..|+|+|.. +...+.+.++..+|.
T Consensus 555 ~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 555 IDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred ceEEEchHHHhhCCCCcccCCEEEe
Confidence 999999984 445577778877764
No 173
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=96.23 E-value=0.03 Score=44.64 Aligned_cols=88 Identities=10% Similarity=0.186 Sum_probs=68.0
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhhcCC----ceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhcc-CCCCcc
Q psy1621 114 EFTVSAMHGDMDQNARDVIMRQFRSGS----SRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGG-RFGRKG 188 (224)
Q Consensus 114 ~~~~~~~~g~~~~~~r~~~~~~f~~~~----~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~-R~g~~~ 188 (224)
++.+..++++.+.+. -.|.++. ..|+|.-+.+++|+.+++....+....+.+...+.||.-..| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 689999998765543 3444443 789999999999999999999999999998888888754444 877788
Q ss_pred eEEEEeccccHHHHHHHH
Q psy1621 189 VAINFVTAEDKRTLKDTE 206 (224)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~ 206 (224)
.|-++.+++-...+..+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIA 202 (239)
T ss_pred ceEEecCHHHHHHHHHHH
Confidence 999999887555554443
No 174
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.16 E-value=0.052 Score=49.69 Aligned_cols=60 Identities=5% Similarity=0.040 Sum_probs=43.6
Q ss_pred HHHHHhhcCCceEEEEcC----CcccCCCCCCCCEEEEeCCC------C------ChhHHHHHHhhccCCCCcceEEEEe
Q psy1621 131 VIMRQFRSGSSRVLITTD----LLARGIDVQQVSLVINYDLP------S------NRENYIHRIGRGGRFGRKGVAINFV 194 (224)
Q Consensus 131 ~~~~~f~~~~~~ilv~t~----~~~~Gvdi~~~~~vi~~~~p------~------s~~~~~q~~GR~~R~g~~~~~~~~~ 194 (224)
.+++.|. ++.+|||+|+ ++. ++++.|+..|.. + ....+.|.+||+||.+..|.+++..
T Consensus 463 ~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 463 QVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred HHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 4788886 5899999999 554 355666655532 1 2445688999999998899999875
Q ss_pred cc
Q psy1621 195 TA 196 (224)
Q Consensus 195 ~~ 196 (224)
.+
T Consensus 537 ~p 538 (665)
T PRK14873 537 ES 538 (665)
T ss_pred CC
Confidence 33
No 175
>PRK14701 reverse gyrase; Provisional
Probab=95.72 E-value=0.098 Score=52.51 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=64.3
Q ss_pred EEEEecCCccHHHHHH--HHhccCCCCcEEEEeCchHHHHHHHHHHHhC------CCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 67 FYIYIEREDWKFDTLC--DLYGTLSITQAVIFCNTRRKVDWLTESMLKK------EFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~--~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~------~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
+....++...|..... .+....++.++||.++|++-+..+++.|... +..+..+||+++..++.+.++.+++
T Consensus 97 ~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~ 176 (1638)
T PRK14701 97 FSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIEN 176 (1638)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhc
Confidence 4455566566776322 2222225668999999999999999988763 4577899999999999999999999
Q ss_pred CCceEEEEcCC
Q psy1621 139 GSSRVLITTDL 149 (224)
Q Consensus 139 ~~~~ilv~t~~ 149 (224)
|+.+|+|+|+.
T Consensus 177 g~~dILV~TPg 187 (1638)
T PRK14701 177 GDFDILVTTAQ 187 (1638)
T ss_pred CCCCEEEECCc
Confidence 99999999985
No 176
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.70 E-value=0.12 Score=50.36 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=71.9
Q ss_pred EEEEecCCccHHHHHHHHh-c-cCCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCC
Q psy1621 67 FYIYIEREDWKFDTLCDLY-G-TLSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGS 140 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll-~-~~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~ 140 (224)
.....+....|........ . -..+.+++|.++|+.-|...++.+.+. ++++..++|+.+..++.++++.+++|.
T Consensus 624 ~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~ 703 (1147)
T PRK10689 624 RLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK 703 (1147)
T ss_pred EEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC
Confidence 4444555555775433211 1 124678999999999999988887653 467888999999999999999999999
Q ss_pred ceEEEEcCC-cccCCCCCCCCEEEE
Q psy1621 141 SRVLITTDL-LARGIDVQQVSLVIN 164 (224)
Q Consensus 141 ~~ilv~t~~-~~~Gvdi~~~~~vi~ 164 (224)
.+|+|+|+. +...+++.++..+|.
T Consensus 704 ~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 704 IDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCEEEECHHHHhCCCCHhhCCEEEE
Confidence 999999974 444466667776663
No 177
>KOG0921|consensus
Probab=95.32 E-value=0.024 Score=52.54 Aligned_cols=107 Identities=17% Similarity=0.391 Sum_probs=86.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC-------CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEE
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK-------EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLV 162 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~v 162 (224)
.+-+++|.+-.+....+.++|..+ ...+...|+.....+..++.+....|..+++++|.+.+..+.+.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 467899999999888888887654 3468889999998999999999999999999999999999999887777
Q ss_pred EEeC------------------CCCChhHHHHHHhhccCCCCcceEEEEeccc
Q psy1621 163 INYD------------------LPSNRENYIHRIGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 163 i~~~------------------~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~ 197 (224)
++.+ ..-|..+..|+.||+||. +.|.|..+++..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH
Confidence 7544 122456688999999986 578777776553
No 178
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.13 Score=45.72 Aligned_cols=68 Identities=22% Similarity=0.377 Sum_probs=53.9
Q ss_pred EEEEeCchHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CcccC-CCCCCCCE
Q psy1621 93 AVIFCNTRRKVDWLTESMLKK-----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD-----LLARG-IDVQQVSL 161 (224)
Q Consensus 93 ~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~-----~~~~G-vdi~~~~~ 161 (224)
+||.++|++-|..+++.+... ++.+..++||++...+.. .++.| .+|+|+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~---~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIE---ALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHH---HHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999998877553 467899999998876664 44446 89999998 35555 88888888
Q ss_pred EEE
Q psy1621 162 VIN 164 (224)
Q Consensus 162 vi~ 164 (224)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 874
No 179
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.24 E-value=0.16 Score=46.02 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=62.7
Q ss_pred CCCcEEEEeCchHHHH----HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-cccCCCCCCCCEEE
Q psy1621 89 SITQAVIFCNTRRKVD----WLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL-LARGIDVQQVSLVI 163 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~----~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~-~~~Gvdi~~~~~vi 163 (224)
.+.++.+-++|-=-|+ .+.++|...++++..+.|++....|+++++...+|+++++|.|-+ +...+++.+...||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 5778999999855444 455566667899999999999999999999999999999999987 66678887777666
Q ss_pred E
Q psy1621 164 N 164 (224)
Q Consensus 164 ~ 164 (224)
.
T Consensus 390 i 390 (677)
T COG1200 390 I 390 (677)
T ss_pred E
Confidence 3
No 180
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=94.97 E-value=0.13 Score=50.17 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=61.4
Q ss_pred EEEEecCCccHHHHHHHHhc--cCCCCcEEEEeCchHHHHHHHHHHHhC----CCe---EEEecCCCCHHHHHHHHHHhh
Q psy1621 67 FYIYIEREDWKFDTLCDLYG--TLSITQAVIFCNTRRKVDWLTESMLKK----EFT---VSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~--~~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~---~~~~~g~~~~~~r~~~~~~f~ 137 (224)
+....+....|.....-+.. ...+.+++|.++|++-+..+++.+.+. ++. +..+||+++..++...++.++
T Consensus 96 ~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~ 175 (1171)
T TIGR01054 96 FAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIE 175 (1171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHh
Confidence 34445555567764432221 124678999999999999998887664 333 346899999999999999999
Q ss_pred cCCceEEEEcCC
Q psy1621 138 SGSSRVLITTDL 149 (224)
Q Consensus 138 ~~~~~ilv~t~~ 149 (224)
+|...|+|+|+.
T Consensus 176 ~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 176 NGDFDILITTTM 187 (1171)
T ss_pred cCCCCEEEECHH
Confidence 998999999984
No 181
>KOG0701|consensus
Probab=94.87 E-value=0.019 Score=56.45 Aligned_cols=97 Identities=23% Similarity=0.355 Sum_probs=79.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCC-CeEEEecCCCCH-----------HHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKE-FTVSAMHGDMDQ-----------NARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~-~~~~~~~g~~~~-----------~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
..-..++|++.+..+....+.++... ..+..+.|.+.+ ..+..++..|.....++|++|.++.+|+|+
T Consensus 291 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~ 370 (1606)
T KOG0701|consen 291 ETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV 370 (1606)
T ss_pred hhhhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch
Confidence 33567899999999888888876652 234445554432 236688899999999999999999999999
Q ss_pred CCCCEEEEeCCCCChhHHHHHHhhccCCC
Q psy1621 157 QQVSLVINYDLPSNRENYIHRIGRGGRFG 185 (224)
Q Consensus 157 ~~~~~vi~~~~p~s~~~~~q~~GR~~R~g 185 (224)
+.++-++.++.|.....|.|..||+.+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999999997754
No 182
>KOG1133|consensus
Probab=94.70 E-value=1.4 Score=40.21 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=77.9
Q ss_pred HHHHHHHHhccC---CCCcEEEEeCchHHHHHHHHHHHhCCC-------eEEEecCCCCHHHHHHHHHHhh----cCCce
Q psy1621 77 KFDTLCDLYGTL---SITQAVIFCNTRRKVDWLTESMLKKEF-------TVSAMHGDMDQNARDVIMRQFR----SGSSR 142 (224)
Q Consensus 77 k~~~l~~ll~~~---~~~~~iIf~~t~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~r~~~~~~f~----~~~~~ 142 (224)
-+..|-..+.++ -++-+++|+++-+=...+.+.+.+.|+ +-.++-...+ -..+++.|+ +|.-.
T Consensus 613 ~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~Ga 689 (821)
T KOG1133|consen 613 MIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGA 689 (821)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCe
Confidence 444554444443 247889999999988888888876543 2233333333 344566664 44446
Q ss_pred EEEEc--CCcccCCCCCC--CCEEEEeCCCCC--------------------------------hhHHHHHHhhccCCCC
Q psy1621 143 VLITT--DLLARGIDVQQ--VSLVINYDLPSN--------------------------------RENYIHRIGRGGRFGR 186 (224)
Q Consensus 143 ilv~t--~~~~~Gvdi~~--~~~vi~~~~p~s--------------------------------~~~~~q~~GR~~R~g~ 186 (224)
+|+|. --+++|||+.+ ++.|+..++|.. +...-|-+|||-|.-+
T Consensus 690 iLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~ 769 (821)
T KOG1133|consen 690 ILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRK 769 (821)
T ss_pred EEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77775 45889999987 688999888864 1115688999999776
Q ss_pred cceEEEEeccc
Q psy1621 187 KGVAINFVTAE 197 (224)
Q Consensus 187 ~~~~~~~~~~~ 197 (224)
+--++++++..
T Consensus 770 DYA~i~LlD~R 780 (821)
T KOG1133|consen 770 DYASIYLLDKR 780 (821)
T ss_pred cceeEEEehhh
Confidence 66677776553
No 183
>KOG0298|consensus
Probab=94.69 E-value=0.072 Score=51.08 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=76.3
Q ss_pred HHHHHHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q psy1621 77 KFDTLCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLAR 152 (224)
Q Consensus 77 k~~~l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~ 152 (224)
|+..+..++.- ....++|+|+.-..-.+.+...+.-.++....- |+ .++....+..|++ --+.++-+...+.
T Consensus 1204 kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~-~~--t~d~~dc~~~fk~-I~clll~~~~~~~ 1279 (1394)
T KOG0298|consen 1204 KIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLD-GE--TEDFDDCIICFKS-IDCLLLFVSKGSK 1279 (1394)
T ss_pred CchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhc-cC--Ccchhhhhhhccc-ceEEEEEeccCcc
Confidence 66555444332 245689999876666666666665444432211 11 2344556677765 3346777889999
Q ss_pred CCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcce
Q psy1621 153 GIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV 189 (224)
Q Consensus 153 Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~ 189 (224)
|+|+-.+.||+..++-.++..-.|.+||+.|.|++..
T Consensus 1280 GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1280 GLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred cccHHhhhhhheeccccCchHHHhhhhhhhhcccccc
Confidence 9999999999999999999999999999999998654
No 184
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=94.63 E-value=1.2 Score=40.35 Aligned_cols=81 Identities=7% Similarity=0.049 Sum_probs=64.1
Q ss_pred EEEEecCCccHHHHH-HHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 67 FYIYIEREDWKFDTL-CDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l-~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
.+...++...|-... .-.+ ..++.++|.+++++-+..-.+.|...++.+..+||+++..++..+++....|..++++
T Consensus 31 vlv~~PTG~GKTl~y~lpal--~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~ 108 (591)
T TIGR01389 31 VLVVMPTGGGKSLCYQVPAL--LLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLY 108 (591)
T ss_pred EEEEcCCCccHhHHHHHHHH--HcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 455555555565432 2222 2356789999999999988899999999999999999999999999999999999999
Q ss_pred EcCC
Q psy1621 146 TTDL 149 (224)
Q Consensus 146 ~t~~ 149 (224)
.|+.
T Consensus 109 ~tpe 112 (591)
T TIGR01389 109 VAPE 112 (591)
T ss_pred EChh
Confidence 9874
No 185
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.07 E-value=0.26 Score=43.39 Aligned_cols=81 Identities=6% Similarity=0.047 Sum_probs=64.1
Q ss_pred EEEEecCCccHHH-HHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 67 FYIYIEREDWKFD-TLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 67 ~~~~~~~~~~k~~-~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
.+...+....|-- ++.-.+. .++.+||.+++++-+......|...++.+..++|+.+..++..++.....++.++++
T Consensus 29 vlv~apTGsGKTl~y~lp~l~--~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~ 106 (470)
T TIGR00614 29 CFVVMPTGGGKSLCYQLPALC--SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLY 106 (470)
T ss_pred EEEEcCCCCcHhHHHHHHHHH--cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 4445555555643 2222222 356899999999999998999999999999999999999999999999999999999
Q ss_pred EcCC
Q psy1621 146 TTDL 149 (224)
Q Consensus 146 ~t~~ 149 (224)
+|+.
T Consensus 107 ~TPe 110 (470)
T TIGR00614 107 VTPE 110 (470)
T ss_pred ECHH
Confidence 9984
No 186
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=94.01 E-value=2.1 Score=32.69 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=52.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-----c-ccCCCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL-----L-ARGIDVQQ 158 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~-----~-~~Gvdi~~ 158 (224)
.+.++||.+++++-+...++.++.. +..+..++|+.+..+...... +...|+|+|+. + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4568999999999998887776554 677888999988765543332 55689999962 2 22256677
Q ss_pred CCEEEEeC
Q psy1621 159 VSLVINYD 166 (224)
Q Consensus 159 ~~~vi~~~ 166 (224)
++.+|.-+
T Consensus 144 l~~lIvDE 151 (203)
T cd00268 144 VKYLVLDE 151 (203)
T ss_pred CCEEEEeC
Confidence 77776433
No 187
>KOG0347|consensus
Probab=93.73 E-value=0.19 Score=44.39 Aligned_cols=52 Identities=13% Similarity=0.312 Sum_probs=46.0
Q ss_pred EEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 93 AVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 93 ~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
.||+++|++-|-.+.++|... ++.+..+.||++....++++.. ...|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 899999999999999998664 7899999999999888877766 568999998
No 188
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=93.47 E-value=0.55 Score=45.15 Aligned_cols=88 Identities=14% Similarity=0.191 Sum_probs=70.7
Q ss_pred cHHHHHHHHh-cc-CCCCcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-
Q psy1621 76 WKFDTLCDLY-GT-LSITQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD- 148 (224)
Q Consensus 76 ~k~~~l~~ll-~~-~~~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~- 148 (224)
.|.+...... +. ..+.+|.|.|+|.=-|+.-++-+++ .++++..+..-.+..|...+++..++|+++|+|.|-
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 3776665433 33 3678999999998888776666654 467888899989999999999999999999999995
Q ss_pred CcccCCCCCCCCEEE
Q psy1621 149 LLARGIDVQQVSLVI 163 (224)
Q Consensus 149 ~~~~Gvdi~~~~~vi 163 (224)
.++.+|-+.+...+|
T Consensus 707 LL~kdv~FkdLGLlI 721 (1139)
T COG1197 707 LLSKDVKFKDLGLLI 721 (1139)
T ss_pred hhCCCcEEecCCeEE
Confidence 688888888887766
No 189
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=93.44 E-value=0.56 Score=41.12 Aligned_cols=96 Identities=15% Similarity=0.192 Sum_probs=63.8
Q ss_pred EEEEecCCccHHHH-HHHHhccC----CCCcEEEEeCchHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHh
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKK-----EFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.+...+....|..+ +.-++... ...++||.++|++-+..+++.++.. +..+..++|+.+.......++
T Consensus 44 vi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~-- 121 (460)
T PRK11776 44 VIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE-- 121 (460)
T ss_pred EEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc--
Confidence 44455555557643 33333322 2347999999999999988877653 578889999998766544333
Q ss_pred hcCCceEEEEcCC-----c-ccCCCCCCCCEEEEeC
Q psy1621 137 RSGSSRVLITTDL-----L-ARGIDVQQVSLVINYD 166 (224)
Q Consensus 137 ~~~~~~ilv~t~~-----~-~~Gvdi~~~~~vi~~~ 166 (224)
....|+|+|+- + ...+++.++..+|.-+
T Consensus 122 --~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 122 --HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred --CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 45789999962 2 2457788888877543
No 190
>KOG0338|consensus
Probab=93.35 E-value=0.78 Score=40.40 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=59.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-------cccCCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL-------LARGIDVQ 157 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~-------~~~Gvdi~ 157 (224)
...++||.|+|++-+-.++...++. .+.++..-||++-...+.++. ...+|+|||+- -..++|+.
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCcccc
Confidence 4579999999999887777665543 678889999999877666653 44789999982 45677777
Q ss_pred CCCEEEEeCCCCChhHH
Q psy1621 158 QVSLVINYDLPSNRENY 174 (224)
Q Consensus 158 ~~~~vi~~~~p~s~~~~ 174 (224)
++..+|.-....-++.|
T Consensus 327 siEVLvlDEADRMLeeg 343 (691)
T KOG0338|consen 327 SIEVLVLDEADRMLEEG 343 (691)
T ss_pred ceeEEEechHHHHHHHH
Confidence 77776655544444443
No 191
>KOG0331|consensus
Probab=93.16 E-value=1.3 Score=39.17 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=53.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CcccC-CCCCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD-----LLARG-IDVQQV 159 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~-----~~~~G-vdi~~~ 159 (224)
+..+||.++|++-|..+.+.+.+. +.+..+++|+.+......- .++| +.|+|+|+ .++.| +|+..+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~---l~~g-vdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRD---LERG-VDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHH---HhcC-CcEEEeCChHHHHHHHcCCccccce
Confidence 456999999999999999988765 3458899999886554433 3333 68999998 45555 788889
Q ss_pred CEEEE
Q psy1621 160 SLVIN 164 (224)
Q Consensus 160 ~~vi~ 164 (224)
++++-
T Consensus 241 ~ylVL 245 (519)
T KOG0331|consen 241 TYLVL 245 (519)
T ss_pred eEEEe
Confidence 98874
No 192
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.10 E-value=0.75 Score=42.11 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=61.3
Q ss_pred EEEEecCCccHHHHH-HHHhc----cCCCCcEEEEeCchHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHh
Q psy1621 67 FYIYIEREDWKFDTL-CDLYG----TLSITQAVIFCNTRRKVDWLTESMLKK-----EFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l-~~ll~----~~~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.+...++-..|..+. .-++. .....++||.++|++-+..+++.+... ++.+..+||+.+.+.....+
T Consensus 46 vl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l--- 122 (629)
T PRK11634 46 VLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL--- 122 (629)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---
Confidence 444455555576543 22222 224458999999999999888776543 67888999998776544333
Q ss_pred hcCCceEEEEcCC-----c-ccCCCCCCCCEEEE
Q psy1621 137 RSGSSRVLITTDL-----L-ARGIDVQQVSLVIN 164 (224)
Q Consensus 137 ~~~~~~ilv~t~~-----~-~~Gvdi~~~~~vi~ 164 (224)
+ ....|+|+|+. + ...+++.++..||.
T Consensus 123 ~-~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 123 R-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred c-CCCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 2 34689999962 2 23467778877764
No 193
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=92.86 E-value=1.6 Score=38.34 Aligned_cols=141 Identities=15% Similarity=0.137 Sum_probs=91.3
Q ss_pred EEEEecCCccHHHHHHH----HhccCCCCcEEEEeCchHHHHHHHHHHHhC-C---CeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 67 FYIYIEREDWKFDTLCD----LYGTLSITQAVIFCNTRRKVDWLTESMLKK-E---FTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~----ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~-~---~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
..+.++..-.|.-...- .+...++ ++|+.++|+.-+..-++.+.+. + -.+..++|..++++|...+..
T Consensus 32 tLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~--- 107 (542)
T COG1111 32 TLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK--- 107 (542)
T ss_pred eEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh---
Confidence 34455554445433322 2333344 8999999999888777777654 3 368899999999999876643
Q ss_pred CCceEEEEcCC-----cccC-CCCCCCCEEEEeCCCCCh--hHHHHHHhhccCCCCcceEEEEecc--ccHHHHHHHHHH
Q psy1621 139 GSSRVLITTDL-----LARG-IDVQQVSLVINYDLPSNR--ENYIHRIGRGGRFGRKGVAINFVTA--EDKRTLKDTEQF 208 (224)
Q Consensus 139 ~~~~ilv~t~~-----~~~G-vdi~~~~~vi~~~~p~s~--~~~~q~~GR~~R~g~~~~~~~~~~~--~~~~~~~~~~~~ 208 (224)
.+|+|+|+- +-.| +|+.++.++|+-...... -.|.+-+-...|....-..+-+... .+.+..+.+++-
T Consensus 108 --~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~n 185 (542)
T COG1111 108 --KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVEN 185 (542)
T ss_pred --CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHh
Confidence 379999982 3444 888889888876544322 2356666556665555444444333 477888888887
Q ss_pred hcccc
Q psy1621 209 YNTRI 213 (224)
Q Consensus 209 ~~~~~ 213 (224)
++++-
T Consensus 186 LgIe~ 190 (542)
T COG1111 186 LGIEK 190 (542)
T ss_pred CCcce
Confidence 76543
No 194
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=91.77 E-value=1.9 Score=38.90 Aligned_cols=147 Identities=8% Similarity=0.092 Sum_probs=95.5
Q ss_pred eEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEE
Q psy1621 65 RQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVL 144 (224)
Q Consensus 65 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~il 144 (224)
.+.++..++...|- +..++=.-...+.+||..+=.+-...=...|...|+.+.++++.++.+++..++..+..|..++|
T Consensus 33 ~d~lvvmPTGgGKS-lCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klL 111 (590)
T COG0514 33 KDTLVVMPTGGGKS-LCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLL 111 (590)
T ss_pred CcEEEEccCCCCcc-hHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEE
Confidence 34455555544342 22222222235799999999888888888899999999999999999999999999999999998
Q ss_pred EEcCCccc---------CCC-----CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhc
Q psy1621 145 ITTDLLAR---------GID-----VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYN 210 (224)
Q Consensus 145 v~t~~~~~---------Gvd-----i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (224)
.-++.--. .+. |..+.+|-.|+..+=+ + +.+.|+....-..-.++.+....+......|.+.++
T Consensus 112 yisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP-~-Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~ 189 (590)
T COG0514 112 YISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRP-D-YRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLG 189 (590)
T ss_pred EECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCH-h-HHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhc
Confidence 88773211 111 1223333355544333 2 345555433222455666655667777788888777
Q ss_pred cccc
Q psy1621 211 TRIE 214 (224)
Q Consensus 211 ~~~~ 214 (224)
....
T Consensus 190 l~~~ 193 (590)
T COG0514 190 LQDA 193 (590)
T ss_pred CCCc
Confidence 6553
No 195
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.53 E-value=1.1 Score=38.91 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=53.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC------cccCCCCCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL------LARGIDVQQV 159 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~------~~~Gvdi~~~ 159 (224)
..++||.++|++-+..+++.+.. .+..+..++|+.+...+...+ .+...|+|+|+. ....+++.++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 35799999999998887776554 367899999999877655443 345689999972 2345677778
Q ss_pred CEEEEeC
Q psy1621 160 SLVINYD 166 (224)
Q Consensus 160 ~~vi~~~ 166 (224)
.+||.-+
T Consensus 149 ~~lViDE 155 (434)
T PRK11192 149 ETLILDE 155 (434)
T ss_pred CEEEEEC
Confidence 8777543
No 196
>KOG0339|consensus
Probab=91.44 E-value=5.2 Score=35.51 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=53.4
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC------CcccCCCCCCCC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD------LLARGIDVQQVS 160 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~------~~~~Gvdi~~~~ 160 (224)
.-.+|.|+|++-|..+....++. ++++..+|||.+..+..+-++ ...-|+|||+ +--.++|+..++
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS 372 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVS 372 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeee
Confidence 34677889999988887766554 788999999999987766554 3457899998 344578888888
Q ss_pred EEEE
Q psy1621 161 LVIN 164 (224)
Q Consensus 161 ~vi~ 164 (224)
++++
T Consensus 373 ~LV~ 376 (731)
T KOG0339|consen 373 YLVL 376 (731)
T ss_pred EEEE
Confidence 8774
No 197
>KOG1513|consensus
Probab=91.25 E-value=0.47 Score=43.92 Aligned_cols=64 Identities=23% Similarity=0.388 Sum_probs=51.1
Q ss_pred HHHhhcCCceEEEEcCCcccCCCCCCCCEE--------EEeCCCCChhHHHHHHhhccCCCC-cc-eEEEEecc
Q psy1621 133 MRQFRSGSSRVLITTDLLARGIDVQQVSLV--------INYDLPSNRENYIHRIGRGGRFGR-KG-VAINFVTA 196 (224)
Q Consensus 133 ~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~v--------i~~~~p~s~~~~~q~~GR~~R~g~-~~-~~~~~~~~ 196 (224)
-++|..|+-.|-|-+.+++-||-+..-+.| |....|||...-+|..||+.|..+ .+ ..++++++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIse 923 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISE 923 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehh
Confidence 356999999999999999999999765544 467899999999999999999886 33 44444444
No 198
>KOG0383|consensus
Probab=91.00 E-value=0.15 Score=46.55 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=65.6
Q ss_pred cHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc---CCceEEEEcCCc
Q psy1621 76 WKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS---GSSRVLITTDLL 150 (224)
Q Consensus 76 ~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~---~~~~ilv~t~~~ 150 (224)
.|+..|...++.+ .+++++||..-.+..+.+..++...+ ....+.|.....+|...+++|+. .....|.+|.+.
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 3777777777655 68999999999999999999998888 88899999999999999999983 355789999998
Q ss_pred ccC
Q psy1621 151 ARG 153 (224)
Q Consensus 151 ~~G 153 (224)
|.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 876
No 199
>KOG0330|consensus
Probab=91.00 E-value=1.8 Score=36.92 Aligned_cols=82 Identities=17% Similarity=0.252 Sum_probs=58.9
Q ss_pred HHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC----
Q psy1621 78 FDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL---- 149 (224)
Q Consensus 78 ~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~---- 149 (224)
+..|..++.+.....++|.++|++-+..+++.+... |..+..+-||+.... .....++ +..|+|||+-
T Consensus 117 LPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~--q~~~L~k--kPhilVaTPGrL~d 192 (476)
T KOG0330|consen 117 LPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMML--QANQLSK--KPHILVATPGRLWD 192 (476)
T ss_pred HHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHH--HHHHhhc--CCCEEEeCcHHHHH
Confidence 345556666555678999999999999999988766 678999999987643 3333343 4578999982
Q ss_pred ---cccCCCCCCCCEEE
Q psy1621 150 ---LARGIDVQQVSLVI 163 (224)
Q Consensus 150 ---~~~Gvdi~~~~~vi 163 (224)
-..|+++..+.+.|
T Consensus 193 hl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 193 HLENTKGFSLEQLKFLV 209 (476)
T ss_pred HHHhccCccHHHhHHHh
Confidence 25677776666555
No 200
>PRK09401 reverse gyrase; Reviewed
Probab=90.91 E-value=1.6 Score=42.95 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=58.3
Q ss_pred EEEEecCCccHHHHHHHHhc--cCCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEE--ecCCCCHHHHHHHHHHhhc
Q psy1621 67 FYIYIEREDWKFDTLCDLYG--TLSITQAVIFCNTRRKVDWLTESMLKK----EFTVSA--MHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~--~~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~--~~g~~~~~~r~~~~~~f~~ 138 (224)
+....+....|...+.-+.. ...+.+++|.++|++-+..+++.+.+. +..+.. .|++++..++....+.+++
T Consensus 98 v~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~ 177 (1176)
T PRK09401 98 FAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKE 177 (1176)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhc
Confidence 34555566668764432221 224678999999999999999988765 334433 4455667788888889999
Q ss_pred CCceEEEEcC
Q psy1621 139 GSSRVLITTD 148 (224)
Q Consensus 139 ~~~~ilv~t~ 148 (224)
+...|+|+|+
T Consensus 178 ~~~~IlV~Tp 187 (1176)
T PRK09401 178 GDFDILVTTS 187 (1176)
T ss_pred CCCCEEEECH
Confidence 9999999997
No 201
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=90.58 E-value=1.4 Score=40.24 Aligned_cols=81 Identities=7% Similarity=0.024 Sum_probs=63.4
Q ss_pred EEEEecCCccHHHH-HHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
.++..++...|-.. +.-.+. ..+.+||.+++++-+......|...++.+..+++..+.+++..+.+...+|+.++++
T Consensus 43 vlv~apTGsGKTl~y~lpal~--~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~ 120 (607)
T PRK11057 43 CLVVMPTGGGKSLCYQIPALV--LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLY 120 (607)
T ss_pred EEEEcCCCchHHHHHHHHHHH--cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 34555555556532 222222 346899999999999999999999999999999999999999999999999999999
Q ss_pred EcCC
Q psy1621 146 TTDL 149 (224)
Q Consensus 146 ~t~~ 149 (224)
+|+.
T Consensus 121 ~tPe 124 (607)
T PRK11057 121 IAPE 124 (607)
T ss_pred EChH
Confidence 8863
No 202
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=90.09 E-value=1.6 Score=42.47 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=53.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS--GSSRVLITTDL 149 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~--~~~~ilv~t~~ 149 (224)
++.+||.+++++-+..-...|...++.+..++|+++..++..++..+.. |+.+||++|+.
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 4689999999999886666777889999999999999999999999877 88999999984
No 203
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.94 E-value=1.9 Score=37.33 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=51.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC------cccCCCCCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL------LARGIDVQQV 159 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~------~~~Gvdi~~~ 159 (224)
+.++||.++|++-|..+++.+.. .++.+..++|+.+.+.....+ + ...+|+|+|+. -...+++.++
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~-~~~~IlV~TP~~l~~~l~~~~~~l~~v 158 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL---E-SGVDILIGTTGRLIDYAKQNHINLGAI 158 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcccccc
Confidence 35799999999999988776544 367889999998765543332 2 35689999982 1234677778
Q ss_pred CEEEEeC
Q psy1621 160 SLVINYD 166 (224)
Q Consensus 160 ~~vi~~~ 166 (224)
.++|.-.
T Consensus 159 ~~lViDE 165 (423)
T PRK04837 159 QVVVLDE 165 (423)
T ss_pred cEEEEec
Confidence 8777533
No 204
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.63 E-value=3.7 Score=36.16 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=52.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC------cccCCCCCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL------LARGIDVQQV 159 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~------~~~Gvdi~~~ 159 (224)
..++||.++|++-+..+++.++.. ++.+..++|+.+..... +.+..+...|+|+|+- ....+.+.++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 357999999999999988877654 67888899987654433 4455667889999983 2234566677
Q ss_pred CEEEE
Q psy1621 160 SLVIN 164 (224)
Q Consensus 160 ~~vi~ 164 (224)
.+||.
T Consensus 239 ~~lVi 243 (475)
T PRK01297 239 EVMVL 243 (475)
T ss_pred ceEEe
Confidence 77664
No 205
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=89.24 E-value=2.3 Score=37.30 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=51.1
Q ss_pred cEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC------cccCCCCCCCCE
Q psy1621 92 QAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL------LARGIDVQQVSL 161 (224)
Q Consensus 92 ~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~------~~~Gvdi~~~~~ 161 (224)
++||.++|++-|..+.+.+... ++.+..++|+.+.++.... + .+..+|+|+|+. ....+++..+.+
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---L-RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---H-cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 6999999999998888877653 5678889999887654322 2 356789999972 234567777877
Q ss_pred EEEe
Q psy1621 162 VINY 165 (224)
Q Consensus 162 vi~~ 165 (224)
+|.-
T Consensus 153 lViD 156 (456)
T PRK10590 153 LVLD 156 (456)
T ss_pred EEee
Confidence 7643
No 206
>KOG0350|consensus
Probab=88.69 E-value=2.4 Score=37.38 Aligned_cols=80 Identities=11% Similarity=0.162 Sum_probs=58.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHH-HHHHHHHHhhcCCceEEEEcCC-------cccCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQN-ARDVIMRQFRSGSSRVLITTDL-------LARGIDV 156 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~-~r~~~~~~f~~~~~~ilv~t~~-------~~~Gvdi 156 (224)
+.-++||.++++.-+..++..+... |..+....|.-+-+ |..+....-....++|||+|+. .-.|+|+
T Consensus 214 ~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~L 293 (620)
T KOG0350|consen 214 KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDL 293 (620)
T ss_pred cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcch
Confidence 5578999999999999999888765 55666677765543 3334444444557799999993 4688999
Q ss_pred CCCCEEEEeCCC
Q psy1621 157 QQVSLVINYDLP 168 (224)
Q Consensus 157 ~~~~~vi~~~~p 168 (224)
.+.+++|+-...
T Consensus 294 k~LrfLVIDEAD 305 (620)
T KOG0350|consen 294 KHLRFLVIDEAD 305 (620)
T ss_pred hhceEEEechHH
Confidence 999988765433
No 207
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=88.29 E-value=1 Score=29.70 Aligned_cols=37 Identities=11% Similarity=0.298 Sum_probs=31.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
+..++++||.+-..+...+..|++.|+++..+.||++
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 3568999998877888889999999988999999964
No 208
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.26 E-value=1.9 Score=39.10 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=50.9
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-----ccc--CCCCCCC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL-----LAR--GIDVQQV 159 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~-----~~~--Gvdi~~~ 159 (224)
.++||.++|++-+..+++.+.+. ++.+..+||+.+.+.....++ +...|+|+|+- +.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhccccchhhe
Confidence 57999999999999888877654 677899999998776554442 45689999972 222 3566666
Q ss_pred CEEEE
Q psy1621 160 SLVIN 164 (224)
Q Consensus 160 ~~vi~ 164 (224)
.++|.
T Consensus 161 ~~lVi 165 (572)
T PRK04537 161 EICVL 165 (572)
T ss_pred eeeEe
Confidence 66654
No 209
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=87.96 E-value=8.5 Score=28.08 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=61.0
Q ss_pred EEEEecCCccHHHHHHH-Hh---ccCCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHH-HHHHHHHHhh
Q psy1621 67 FYIYIEREDWKFDTLCD-LY---GTLSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQN-ARDVIMRQFR 137 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~-ll---~~~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~-~r~~~~~~f~ 137 (224)
.+...+....|-....- ++ .+....++|+.+++++-++...+.+.+. +..+..+|++.+.. +....+
T Consensus 17 ~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 92 (169)
T PF00270_consen 17 VLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL---- 92 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----
T ss_pred EEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc----
Confidence 44555555557655442 22 2224459999999999999998888665 35788899998854 333333
Q ss_pred cCCceEEEEcCC------cccCCCCCCCCEEEE
Q psy1621 138 SGSSRVLITTDL------LARGIDVQQVSLVIN 164 (224)
Q Consensus 138 ~~~~~ilv~t~~------~~~Gvdi~~~~~vi~ 164 (224)
.+...|+|+|+. .....++..+++||.
T Consensus 93 ~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 93 SNQADILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred cccccccccCcchhhccccccccccccceeecc
Confidence 566789999972 222346666776664
No 210
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=86.67 E-value=2.2 Score=27.96 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=32.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~ 125 (224)
+..++|+||.+...+..++..|.+.|+. +..+.||+.
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 5678999999988899999999999886 888899864
No 211
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=86.58 E-value=1.1 Score=30.03 Aligned_cols=37 Identities=14% Similarity=0.414 Sum_probs=31.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
+..+++++|.+-..+...+..|.+.|+.+..+.||+.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 4568999999888888999999999999888889864
No 212
>PRK13766 Hef nuclease; Provisional
Probab=86.45 E-value=7.9 Score=36.40 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=62.3
Q ss_pred EEEEecCCccHHHH----HHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC-C---CeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 67 FYIYIEREDWKFDT----LCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK-E---FTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 67 ~~~~~~~~~~k~~~----l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~-~---~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
..+..+....|... +...+ ...++++||.++|+.-++..++.+.+. + ..+..++|+.+..+|.....
T Consensus 32 ~lv~~ptG~GKT~~a~~~i~~~l-~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~---- 106 (773)
T PRK13766 32 TLVVLPTGLGKTAIALLVIAERL-HKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE---- 106 (773)
T ss_pred eEEEcCCCccHHHHHHHHHHHHH-HhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh----
Confidence 34445555556652 22333 234679999999999998887777654 3 37888999999888765543
Q ss_pred CCceEEEEcCC------cccCCCCCCCCEEEEeCCC
Q psy1621 139 GSSRVLITTDL------LARGIDVQQVSLVINYDLP 168 (224)
Q Consensus 139 ~~~~ilv~t~~------~~~Gvdi~~~~~vi~~~~p 168 (224)
+..|+++|+- ...-+++..++.||.-...
T Consensus 107 -~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 107 -KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred -CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 2468999872 2233556667777754433
No 213
>KOG0329|consensus
Probab=86.18 E-value=2.5 Score=34.06 Aligned_cols=71 Identities=14% Similarity=0.309 Sum_probs=51.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHH---hC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC------CcccCCCCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESML---KK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD------LLARGIDVQQ 158 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~---~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~------~~~~Gvdi~~ 158 (224)
.-.++|.|+|++-+-.+.+... +. +.++.+++||++-..-++.++. -..|+|+|+ +-.+.+++.+
T Consensus 110 ~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~ 185 (387)
T KOG0329|consen 110 QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKN 185 (387)
T ss_pred eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhh
Confidence 3478999999999887776543 33 5689999999987665555543 567999998 3456678877
Q ss_pred CCEEEE
Q psy1621 159 VSLVIN 164 (224)
Q Consensus 159 ~~~vi~ 164 (224)
+.+.+.
T Consensus 186 vkhFvl 191 (387)
T KOG0329|consen 186 VKHFVL 191 (387)
T ss_pred cceeeh
Confidence 776553
No 214
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=84.61 E-value=6 Score=36.87 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=46.9
Q ss_pred hccCCCCcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 85 YGTLSITQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 85 l~~~~~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
+....+.++.|.++|..-|...++.+.+ .|+++..+.|+++.++|..... ..|+++|+.
T Consensus 92 l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 92 LNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 3455677899999999888887776654 4889999999999887765542 579999987
No 215
>PTZ00110 helicase; Provisional
Probab=84.60 E-value=13 Score=33.42 Aligned_cols=73 Identities=14% Similarity=0.224 Sum_probs=51.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CcccC-CCCCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD-----LLARG-IDVQQV 159 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~-----~~~~G-vdi~~~ 159 (224)
+..+||.++|++-|..+.+.+.+. ++.+..++|+.+....... +.. ...|+|+|+ .+..+ +++..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~---l~~-~~~IlVaTPgrL~d~l~~~~~~l~~v 278 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA---LRR-GVEILIACPGRLIDFLESNVTNLRRV 278 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH---HHc-CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 346899999999999988887764 4677888998876544332 333 368999997 23333 567778
Q ss_pred CEEEEeC
Q psy1621 160 SLVINYD 166 (224)
Q Consensus 160 ~~vi~~~ 166 (224)
.+||.-.
T Consensus 279 ~~lViDE 285 (545)
T PTZ00110 279 TYLVLDE 285 (545)
T ss_pred cEEEeeh
Confidence 8777543
No 216
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=84.13 E-value=2.6 Score=28.02 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=30.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+..++|++|.+-..+...+..|...|+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 457899999998888888889988888 6888888863
No 217
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=83.79 E-value=5.1 Score=37.54 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=60.1
Q ss_pred EEEEecCCccHHHH-HHHHhc---cCCCCcEEEEeCchHHHHHHHHHHHhC---CCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 67 FYIYIEREDWKFDT-LCDLYG---TLSITQAVIFCNTRRKVDWLTESMLKK---EFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~---~~~~~~~iIf~~t~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
.....++...|..+ +.-++. ..++.++|+.++|++-+....+.+++. ++++..++|+.+.++|..+ + .
T Consensus 54 vvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~-~ 128 (742)
T TIGR03817 54 VVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----R-E 128 (742)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----h-c
Confidence 44445554445543 222222 224568999999999999999988765 5678899999988776433 2 2
Q ss_pred CceEEEEcCC-cccC---------CCCCCCCEEEEe
Q psy1621 140 SSRVLITTDL-LARG---------IDVQQVSLVINY 165 (224)
Q Consensus 140 ~~~ilv~t~~-~~~G---------vdi~~~~~vi~~ 165 (224)
...|+++|+- +-.+ ..+.++.+||.-
T Consensus 129 ~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViD 164 (742)
T TIGR03817 129 HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVID 164 (742)
T ss_pred CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEe
Confidence 3689999972 2111 114567777743
No 218
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=83.71 E-value=6.2 Score=39.80 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=53.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh----------------CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC----
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLK----------------KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL---- 149 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~----------------~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~---- 149 (224)
+.++|+.+++++-+..+.+.|+. .++++...||+.+.++|.+.++ ....|||+|+-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHHH
Confidence 45799999999999888887752 2578899999999998876443 45689999983
Q ss_pred -cc-cC-CCCCCCCEEEEe
Q psy1621 150 -LA-RG-IDVQQVSLVINY 165 (224)
Q Consensus 150 -~~-~G-vdi~~~~~vi~~ 165 (224)
+. .+ -.+.++++||.-
T Consensus 113 LLtsk~r~~L~~Vr~VIVD 131 (1490)
T PRK09751 113 MLTSRARETLRGVETVIID 131 (1490)
T ss_pred HHhhhhhhhhccCCEEEEe
Confidence 22 22 356778888743
No 219
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=83.46 E-value=12 Score=25.69 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=41.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKE---FTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
...++++++++...++...+.+.... ..+..+++.....+.. ........++++|..
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 55799999999999988888776553 7788888876655444 222345678888875
No 220
>KOG0389|consensus
Probab=80.69 E-value=14 Score=34.70 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=48.9
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcC--CceEEEEcCCcccC
Q psy1621 79 DTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSG--SSRVLITTDLLARG 153 (224)
Q Consensus 79 ~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~--~~~ilv~t~~~~~G 153 (224)
.+|.-+.....++|=||.|++.. .+.+-+.+.+. .+.+..|||. ++||+.+-..++++ ..+||++|.-+..|
T Consensus 437 aFlayLkq~g~~gpHLVVvPsST-leNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~ 512 (941)
T KOG0389|consen 437 AFLAYLKQIGNPGPHLVVVPSST-LENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAAS 512 (941)
T ss_pred HHHHHHHHcCCCCCcEEEecchh-HHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccC
Confidence 33333333335778888888754 33333344443 5689999997 58999999999877 66899999765544
No 221
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=80.35 E-value=4.5 Score=27.11 Aligned_cols=37 Identities=11% Similarity=0.319 Sum_probs=30.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~ 125 (224)
+..+++|+|.+-..+...+..|.+.|+. +..+.||+.
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4568999999877778888899888984 778888863
No 222
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=80.34 E-value=11 Score=27.20 Aligned_cols=81 Identities=19% Similarity=0.157 Sum_probs=44.1
Q ss_pred HHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 78 FDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 78 ~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
...+.+++... .+.+++|+|.+.++++.+-+.|-........-|+-.... ......|+++++... -.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CC
Confidence 46666776543 578999999999999999999988776666666653221 112247999987643 12
Q ss_pred CCCCCEEEEeCCCC
Q psy1621 156 VQQVSLVINYDLPS 169 (224)
Q Consensus 156 i~~~~~vi~~~~p~ 169 (224)
.+..+.+|+.+...
T Consensus 84 ~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 84 NNHADVLINLSGEV 97 (137)
T ss_dssp -S--SEEEE--SS-
T ss_pred CCCCCEEEECCCCC
Confidence 23467888876544
No 223
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=80.07 E-value=3.4 Score=27.42 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=30.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
+..++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 3568999999877778888889889999777888863
No 224
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=79.96 E-value=23 Score=29.28 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=61.4
Q ss_pred ccHHHHHHHHhccC-------CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHH------------H
Q psy1621 75 DWKFDTLCDLYGTL-------SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMR------------Q 135 (224)
Q Consensus 75 ~~k~~~l~~ll~~~-------~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~------------~ 135 (224)
..|+..|.+++... .+..++|.++..++.+.+...|...++.+..+.|....++....-. .
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSK 174 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---------------
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccc
Confidence 34888888777543 3568999999999999999999998889888888766555443330 0
Q ss_pred -hhcC--CceEEEEc-CCcccC----CCCCCCCEEEEeCCCCChh-HHHHHHhhccCCCCcceEEEEeccc
Q psy1621 136 -FRSG--SSRVLITT-DLLARG----IDVQQVSLVINYDLPSNRE-NYIHRIGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 136 -f~~~--~~~ilv~t-~~~~~G----vdi~~~~~vi~~~~p~s~~-~~~q~~GR~~R~g~~~~~~~~~~~~ 197 (224)
-..+ ...|-++| +-+... .+-..++.||-+|.-.+.. ...|++-.-+|.++...++.++...
T Consensus 175 ~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~n 245 (297)
T PF11496_consen 175 KKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPSN 245 (297)
T ss_dssp -------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEETT
T ss_pred cccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeCC
Confidence 0111 22344444 434332 2223567899999775432 3555554444443445555555544
No 225
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=79.84 E-value=9.8 Score=36.26 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=45.6
Q ss_pred cCCCCcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 87 TLSITQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 87 ~~~~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
...+..++|.++|..-|...++.+.. .|+.+..++|+++..+|.... ..+|+++|+.
T Consensus 120 al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 120 AISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred HhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 34567899999999988888887755 478999999999998876554 3679999984
No 226
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=79.41 E-value=10 Score=34.96 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=43.2
Q ss_pred cCCCCcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 87 TLSITQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 87 ~~~~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
...+.+++|.++|+.-|...++.+.+ .|+.+..+.|++++++|+... ...|+++|+
T Consensus 141 al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~ 200 (656)
T PRK12898 141 ALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTN 200 (656)
T ss_pred hhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 34678999999999988877776654 488999999999887666432 346888876
No 227
>KOG0343|consensus
Probab=78.86 E-value=9.4 Score=34.33 Aligned_cols=55 Identities=22% Similarity=0.172 Sum_probs=41.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
.+--+||..+|++-|...++.|.+. ++.++.+-||..-.. +.-+-...+|||||+
T Consensus 140 DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 140 DGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKF-----ELERISQMNILVCTP 198 (758)
T ss_pred CCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHH-----HHHhhhcCCeEEech
Confidence 4567999999999999999999764 677888888865432 222335678999998
No 228
>KOG0340|consensus
Probab=78.80 E-value=8.6 Score=32.56 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=42.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
.+.-.+||++|++-+..+++.|... +.++.++.|+++.-.... --..+..++++|+
T Consensus 74 ~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~----~L~~rPHvVvatP 133 (442)
T KOG0340|consen 74 YGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAA----ILSDRPHVVVATP 133 (442)
T ss_pred CcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhh----hcccCCCeEecCc
Confidence 4667999999999999999998765 568999999976533222 2245667999987
No 229
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=78.12 E-value=4.4 Score=27.77 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=30.0
Q ss_pred CCCcEEEEeCch--HHHHHHHHHHHhCCCeEEEecCCCC
Q psy1621 89 SITQAVIFCNTR--RKVDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~--~~~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
+..+++++|++. ..+..++..|.+.|+++..+.|++.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 457899999865 3678888899999998888999863
No 230
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=78.02 E-value=2.9 Score=29.33 Aligned_cols=37 Identities=8% Similarity=0.164 Sum_probs=31.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC--eEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF--TVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~--~~~~~~g~~~ 125 (224)
...+++++|.+-..+...+..|...|+ ++..+.||+.
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 456899999988888889999999999 6899999974
No 231
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=77.71 E-value=5.5 Score=25.48 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=30.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+..++|++|.+...+..++..|.+.|+ ++..+.||+.
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 567899999998899999999999864 6777888763
No 232
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=77.51 E-value=4.6 Score=26.89 Aligned_cols=36 Identities=8% Similarity=0.219 Sum_probs=29.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..+++++|++-..+...+..|.+.|+ ++..+.|++
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~ 89 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGL 89 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCH
Confidence 356899999998888888999988877 677788885
No 233
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=77.42 E-value=2.5 Score=40.41 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=54.6
Q ss_pred CceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCC--cc-------e-EEEEeccccHHHHHHHHHHh
Q psy1621 140 SSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGR--KG-------V-AINFVTAEDKRTLKDTEQFY 209 (224)
Q Consensus 140 ~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~--~~-------~-~~~~~~~~~~~~~~~~~~~~ 209 (224)
..+.+++.+++.+|-|.|.+-.+.......|...-.|.+||+-|..- .| . -.++++.....+...+.+..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 56899999999999999999999999989999999999999988631 11 2 22344445666666666655
Q ss_pred cc
Q psy1621 210 NT 211 (224)
Q Consensus 210 ~~ 211 (224)
+.
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 33
No 234
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=77.31 E-value=9.9 Score=32.36 Aligned_cols=112 Identities=18% Similarity=0.314 Sum_probs=69.9
Q ss_pred HHHHHHHHhccCCCCcEEEEeC---------chHHHHHHHHHHHhCCCeEEE--ecCCCCHHH-HHHHHHHhhcCCceEE
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCN---------TRRKVDWLTESMLKKEFTVSA--MHGDMDQNA-RDVIMRQFRSGSSRVL 144 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~---------t~~~~~~l~~~L~~~~~~~~~--~~g~~~~~~-r~~~~~~f~~~~~~il 144 (224)
-++.|.+.+.+.. -+..|.|| |++....+.+.+.+++..+.. +|..+--.. +.........+-....
T Consensus 146 D~~~LE~~~~~~~-vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~ 224 (388)
T COG1168 146 DFDALEKAFVDER-VKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNS 224 (388)
T ss_pred cHHHHHHHHhcCC-ccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcce
Confidence 3456666655522 36788886 788889999999999887654 676654332 2222222222223445
Q ss_pred EEcCCcccCCCCCCCCEE-EEeCCCCChhHHHHHHhhccCCCCcce
Q psy1621 145 ITTDLLARGIDVQQVSLV-INYDLPSNRENYIHRIGRGGRFGRKGV 189 (224)
Q Consensus 145 v~t~~~~~Gvdi~~~~~v-i~~~~p~s~~~~~q~~GR~~R~g~~~~ 189 (224)
++....+.+.|+++..+- +++.-+.....|..+.-|.++.+-+..
T Consensus 225 it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~l 270 (388)
T COG1168 225 ITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSAL 270 (388)
T ss_pred EEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchH
Confidence 566666788899987643 333345556788888888887764443
No 235
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=77.25 E-value=14 Score=35.90 Aligned_cols=56 Identities=25% Similarity=0.436 Sum_probs=43.4
Q ss_pred HHHHHHHh--hcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCC
Q psy1621 129 RDVIMRQF--RSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFG 185 (224)
Q Consensus 129 r~~~~~~f--~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g 185 (224)
+.....+| .....++||.++++-.|.|-|.++.++ .|-|--.....|.+.|++|.-
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~ 637 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVF 637 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCC
Confidence 34444553 456778999999999999999987654 556666678899999999974
No 236
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=77.19 E-value=4.2 Score=27.26 Aligned_cols=38 Identities=18% Similarity=0.432 Sum_probs=31.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCCH
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMDQ 126 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~~ 126 (224)
+..+++++|++-..+...+..|.+.|+ ++..+.||+..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 356899999998888888999988888 47888998643
No 237
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=76.38 E-value=28 Score=26.41 Aligned_cols=55 Identities=7% Similarity=0.280 Sum_probs=39.0
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
.++-++-.+...++.+++.|++. +..+...||-.++++...+.+..+....++|+
T Consensus 49 ~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~ 105 (177)
T TIGR00696 49 LPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVF 105 (177)
T ss_pred CeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 45555556667778888888776 55656668888888888888888876665443
No 238
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=75.78 E-value=6.7 Score=36.93 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=56.9
Q ss_pred CCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCC--Ccc-----------eEEEEeccccHHHHHHH
Q psy1621 139 GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFG--RKG-----------VAINFVTAEDKRTLKDT 205 (224)
Q Consensus 139 ~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g--~~~-----------~~~~~~~~~~~~~~~~~ 205 (224)
...+.+++--++.+|-|-|++-.+.......|..+=.|.+||+-|-. +.| .-.+++...+...++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 34679999999999999999999999999999999999999999863 222 12356666788888777
Q ss_pred HHHh
Q psy1621 206 EQFY 209 (224)
Q Consensus 206 ~~~~ 209 (224)
.+..
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 7654
No 239
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=75.76 E-value=9.9 Score=25.85 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=30.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-e-EEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-T-VSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~-~~~~~g~~~ 125 (224)
+..++++||.+-..+...+..|...|+ + +..+.||+.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 346899999887777778889999998 4 788999974
No 240
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=74.90 E-value=16 Score=32.66 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=47.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----Cc-ccCCCCCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD-----LL-ARGIDVQQV 159 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~-----~~-~~Gvdi~~~ 159 (224)
+..+||.++|++-|..+.+.++.. ++.+..+.|+.+..+.. ..+.. ...|+|+|+ .+ ..++++.++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~-~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQ-GVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcC-CCCEEEECHHHHHHHHHcCCccchhe
Confidence 457999999999988877766543 45666777776654332 22333 368999996 22 335677777
Q ss_pred CEEEE
Q psy1621 160 SLVIN 164 (224)
Q Consensus 160 ~~vi~ 164 (224)
.++|.
T Consensus 272 ~~lVi 276 (518)
T PLN00206 272 SVLVL 276 (518)
T ss_pred eEEEe
Confidence 77664
No 241
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=74.22 E-value=11 Score=25.95 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=30.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..++++||++-..+...+..|...|+ ++..+.|++
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 467899999988888888999999998 577788875
No 242
>PRK02362 ski2-like helicase; Provisional
Probab=74.14 E-value=11 Score=35.23 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=59.1
Q ss_pred EEEEecCCccHHHHH-HHHhccC-CCCcEEEEeCchHHHHHHHHHHHhC---CCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 67 FYIYIEREDWKFDTL-CDLYGTL-SITQAVIFCNTRRKVDWLTESMLKK---EFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l-~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
.++..++...|-... .-++... ++.++|+.+++++-|...++.+.+. +.++..++|+...... . .+..
T Consensus 42 vlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~--l~~~ 114 (737)
T PRK02362 42 LLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----W--LGDN 114 (737)
T ss_pred EEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----c--cCCC
Confidence 445555555565543 2333333 5678999999999999998888765 7889999998765331 1 1346
Q ss_pred eEEEEcCC-----cccC-CCCCCCCEEEE
Q psy1621 142 RVLITTDL-----LARG-IDVQQVSLVIN 164 (224)
Q Consensus 142 ~ilv~t~~-----~~~G-vdi~~~~~vi~ 164 (224)
.|+|+|+. +..+ ..+.++..||.
T Consensus 115 ~IiV~Tpek~~~llr~~~~~l~~v~lvVi 143 (737)
T PRK02362 115 DIIVATSEKVDSLLRNGAPWLDDITCVVV 143 (737)
T ss_pred CEEEECHHHHHHHHhcChhhhhhcCEEEE
Confidence 79999962 2222 22456777664
No 243
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=74.12 E-value=5.1 Score=26.95 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=30.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+..++++||.+-..+...+..|...|+ ++..+.|++.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 357899999998888889999999887 4777778763
No 244
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=74.07 E-value=7.2 Score=25.70 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=27.9
Q ss_pred CCcEEEEeCc--hHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 90 ITQAVIFCNT--RRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 90 ~~~~iIf~~t--~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
..+++++|.+ +..+...+..|...|+ ++..+.||+.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5689999998 4446777888888887 5778888863
No 245
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=73.91 E-value=4.1 Score=27.49 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=42.0
Q ss_pred EEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHH------------HHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 93 AVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQN------------ARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 93 ~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~------------~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
.|+.+...+.+..+++.|......+....|.+-.. .+.+.+.+...+-..|+++||.-.+|=.+
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe~I 76 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGELI 76 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHHHH
Confidence 36788888889999998864455666666755321 12344444445567899999988777443
No 246
>KOG0335|consensus
Probab=73.55 E-value=42 Score=29.70 Aligned_cols=71 Identities=23% Similarity=0.328 Sum_probs=51.3
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CcccC-CCCCCCC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD-----LLARG-IDVQQVS 160 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~-----~~~~G-vdi~~~~ 160 (224)
..+||.++|++-++.+++..++. +..+...+|+.+. +. ...+.....+|+|||+ .+++| |.++++.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~--~~--q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDL--GA--QLRFIKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcch--hh--hhhhhccCccEEEecCchhhhhhhcceeehhhCc
Confidence 57999999999999999988775 4567778887332 22 3344456678999997 56666 6777777
Q ss_pred EEEEe
Q psy1621 161 LVINY 165 (224)
Q Consensus 161 ~vi~~ 165 (224)
+++.-
T Consensus 229 ~~vLD 233 (482)
T KOG0335|consen 229 FLVLD 233 (482)
T ss_pred EEEec
Confidence 66643
No 247
>KOG0334|consensus
Probab=73.38 E-value=13 Score=35.74 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=43.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
+.-+||.++|++.+..+.+.+++. ++++...+|+.... +-+...++| ..|+|||+
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~---~qiaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGIS---QQIAELKRG-AEIVVCTP 496 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHH---HHHHHHhcC-CceEEecc
Confidence 445899999999999998877654 88899999986554 456777888 78899987
No 248
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=73.37 E-value=12 Score=27.31 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=30.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
...+++|+|.+-..+...+..|...|+ ++..+.||+
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~ 84 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGT 84 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcH
Confidence 356899999998888888889988877 799999995
No 249
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=73.30 E-value=6.7 Score=25.77 Aligned_cols=36 Identities=17% Similarity=0.391 Sum_probs=30.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..+++++|.+-..+...+..|...|+ ++..+.|++
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 457899999998899999999999987 577788875
No 250
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=72.89 E-value=36 Score=25.50 Aligned_cols=57 Identities=7% Similarity=0.274 Sum_probs=40.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC--CCeEE-EecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK--EFTVS-AMHGDMDQNARDVIMRQFRSGSSRVLIT 146 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~-~~~g~~~~~~r~~~~~~f~~~~~~ilv~ 146 (224)
+.++-++-.+.+.++.+++.|++. ++.+. ..||-+++++...+++..+....++++.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFV 107 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 346656666777788888888877 45544 4567678888899999998776665443
No 251
>PRK05320 rhodanese superfamily protein; Provisional
Probab=72.75 E-value=8.6 Score=31.05 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=33.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCCH
Q psy1621 88 LSITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMDQ 126 (224)
Q Consensus 88 ~~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~~ 126 (224)
.+..++++||.+-.+++..+..|++.|+. +..+.||+..
T Consensus 173 ~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 173 LAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 35678999999999999999999999984 8889999744
No 252
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=72.74 E-value=46 Score=26.45 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=57.5
Q ss_pred CCCcEEEEeCc-----------hHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC----CceEEEEcCCcccC
Q psy1621 89 SITQAVIFCNT-----------RRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG----SSRVLITTDLLARG 153 (224)
Q Consensus 89 ~~~~~iIf~~t-----------~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~----~~~ilv~t~~~~~G 153 (224)
+.+-+||+.|. ...++.+++.|++.|+.+. ++-.++..+-.+.+++|.+. ...++++. .++.|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 44567777764 5689999999999999875 57788999999999999763 23344444 66777
Q ss_pred CCCCCCCEEEEeCC-CCChhHHHHHH
Q psy1621 154 IDVQQVSLVINYDL-PSNRENYIHRI 178 (224)
Q Consensus 154 vdi~~~~~vi~~~~-p~s~~~~~q~~ 178 (224)
. .+.|+-.|. +.+........
T Consensus 85 ~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 85 E----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred C----CCeEEEecCCEEEHHHHHHhc
Confidence 3 256665554 44555544444
No 253
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=72.24 E-value=4.4 Score=27.04 Aligned_cols=37 Identities=11% Similarity=0.265 Sum_probs=29.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~ 125 (224)
+..+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 4568999998877778888899888875 778888863
No 254
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=71.48 E-value=18 Score=34.20 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=50.7
Q ss_pred EEEecCCccHHH-HHHHHh-ccCCCCcEEEEeCchHHHHHHHHHH----HhCCCeEEEecCCCC-HHHHHHHHHHhhcCC
Q psy1621 68 YIYIEREDWKFD-TLCDLY-GTLSITQAVIFCNTRRKVDWLTESM----LKKEFTVSAMHGDMD-QNARDVIMRQFRSGS 140 (224)
Q Consensus 68 ~~~~~~~~~k~~-~l~~ll-~~~~~~~~iIf~~t~~~~~~l~~~L----~~~~~~~~~~~g~~~-~~~r~~~~~~f~~~~ 140 (224)
+....+.+.|-. ++.-++ ....+..+.|.++|..-|..-++.+ ...|+++..+.|+++ .++|+... .
T Consensus 95 Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~ 168 (790)
T PRK09200 95 IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------E 168 (790)
T ss_pred eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------C
Confidence 333444333443 333333 4457889999999988877766655 445899999999999 77776432 2
Q ss_pred ceEEEEcC
Q psy1621 141 SRVLITTD 148 (224)
Q Consensus 141 ~~ilv~t~ 148 (224)
..|+++|+
T Consensus 169 ~dIvygT~ 176 (790)
T PRK09200 169 ADIIYTTN 176 (790)
T ss_pred CCEEEECC
Confidence 67899985
No 255
>KOG0342|consensus
Probab=71.28 E-value=24 Score=31.26 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=40.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----C-CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLK----K-EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~----~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
++-.+||.|+|++-+...+..+++ + ++.+..+-||..... -.+++.+ ..+|||||+
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~---e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSV---EADKLVK-GCNILIATP 213 (543)
T ss_pred CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchH---HHHHhhc-cccEEEeCC
Confidence 456799999999988776665543 3 678888888865432 2233444 678999998
No 256
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=71.23 E-value=7.4 Score=27.53 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHHhCCCeEEEecCCCCH
Q psy1621 89 SITQAVIFCN-TRRKVDWLTESMLKKEFTVSAMHGDMDQ 126 (224)
Q Consensus 89 ~~~~~iIf~~-t~~~~~~l~~~L~~~~~~~~~~~g~~~~ 126 (224)
+..+++|||. +-..+...+..|+..|+++..+.||+..
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 4578999996 4566777778888889999999999643
No 257
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=70.99 E-value=6.9 Score=26.28 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMD 125 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~ 125 (224)
..+++++|.+-..+...+..|...|+. +..+.||+.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 468999998877788888899988884 778889863
No 258
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=70.53 E-value=42 Score=25.12 Aligned_cols=56 Identities=9% Similarity=0.237 Sum_probs=40.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC--CCeEEE-ecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK--EFTVSA-MHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~-~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
+.++-++-.+.+.++.+++.|++. ++.+.. +||-+..++...+++..+....++++
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILF 104 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 456666667777788888888776 555544 67888877777788888877666543
No 259
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=70.43 E-value=62 Score=27.60 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=63.3
Q ss_pred HHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-Ccc
Q psy1621 77 KFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD-LLA 151 (224)
Q Consensus 77 k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~-~~~ 151 (224)
|.+.+.+-+... .++.+.|-.+.+.-|-+++..|++. +..+..+||+-++.-| ..++|||. -+-
T Consensus 129 KTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr-----------~plvVaTtHQLl 197 (441)
T COG4098 129 KTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFR-----------APLVVATTHQLL 197 (441)
T ss_pred chhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhcc-----------ccEEEEehHHHH
Confidence 777777666432 5788888899999999999999875 5789999998665432 35667765 221
Q ss_pred cCCCCCCCCEEEEe---CCCCChhHHHHHHhhccCC
Q psy1621 152 RGIDVQQVSLVINY---DLPSNRENYIHRIGRGGRF 184 (224)
Q Consensus 152 ~Gvdi~~~~~vi~~---~~p~s~~~~~q~~GR~~R~ 184 (224)
+--+ ..+.+|+- ..|.+....+|-+-+-.|.
T Consensus 198 rFk~--aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 198 RFKQ--AFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred HHHh--hccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 1111 12333321 2678877888888777775
No 260
>PTZ00424 helicase 45; Provisional
Probab=70.01 E-value=51 Score=28.07 Aligned_cols=95 Identities=18% Similarity=0.183 Sum_probs=56.9
Q ss_pred EEEecCCccHHHHH-HHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 68 YIYIEREDWKFDTL-CDLYGT----LSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 68 ~~~~~~~~~k~~~l-~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
....+....|.... .-++.. ..+.++|+.+++++-+..+.+.+... +..+....|+....+. .+.+.+
T Consensus 69 ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~ 145 (401)
T PTZ00424 69 IGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKA 145 (401)
T ss_pred EEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcC
Confidence 34455555576432 222221 24568999999999988888777654 3456667777665332 233433
Q ss_pred CCceEEEEcCCc------ccCCCCCCCCEEEEeC
Q psy1621 139 GSSRVLITTDLL------ARGIDVQQVSLVINYD 166 (224)
Q Consensus 139 ~~~~ilv~t~~~------~~Gvdi~~~~~vi~~~ 166 (224)
+ ..|+|+|+-. ...+.+..+..||.-+
T Consensus 146 ~-~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 146 G-VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred C-CCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 3 5799999732 2345566777776443
No 261
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=69.44 E-value=55 Score=25.99 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=59.3
Q ss_pred CCCcEEEEeC------------chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc---CCceEEEEcCCcccC
Q psy1621 89 SITQAVIFCN------------TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS---GSSRVLITTDLLARG 153 (224)
Q Consensus 89 ~~~~~iIf~~------------t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~---~~~~ilv~t~~~~~G 153 (224)
+.+.+||+.| +...++.+++.|++.|+.+ ..+..++..+-.+.+++|.+ ....++++. .++.|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 3455666665 3577999999999999987 46778889999999999985 222333333 56677
Q ss_pred CCCCCCCEEEEeC-CCCChhHHHHHHh
Q psy1621 154 IDVQQVSLVINYD-LPSNRENYIHRIG 179 (224)
Q Consensus 154 vdi~~~~~vi~~~-~p~s~~~~~q~~G 179 (224)
.. +.++-.| .+.++....+...
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhc
Confidence 55 6677666 5666767666664
No 262
>KOG0345|consensus
Probab=69.43 E-value=31 Score=30.47 Aligned_cols=69 Identities=16% Similarity=0.327 Sum_probs=49.8
Q ss_pred cEEEEeCchHHHHHHHHHHHh-----CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----Cccc---CCCCCC
Q psy1621 92 QAVIFCNTRRKVDWLTESMLK-----KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD-----LLAR---GIDVQQ 158 (224)
Q Consensus 92 ~~iIf~~t~~~~~~l~~~L~~-----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~-----~~~~---Gvdi~~ 158 (224)
-.||..+|++-|..+.+.+.. ..+++..+.||.+.++ -++.|++...+|+|+|+ ++.+ ++|..+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 579999999988777665432 2667889999976643 46778888889999998 3333 455556
Q ss_pred CCEEE
Q psy1621 159 VSLVI 163 (224)
Q Consensus 159 ~~~vi 163 (224)
+..+|
T Consensus 158 Le~LV 162 (567)
T KOG0345|consen 158 LEILV 162 (567)
T ss_pred cceEE
Confidence 66665
No 263
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=69.16 E-value=23 Score=34.05 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=50.5
Q ss_pred EecCCccHH-HHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceE
Q psy1621 70 YIEREDWKF-DTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRV 143 (224)
Q Consensus 70 ~~~~~~~k~-~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~i 143 (224)
...+.+.|. .++.-++... .+.+++|.++|+.-|...++.+... ++++..+.|+++.+++...+ ...|
T Consensus 113 eaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DI 186 (970)
T PRK12899 113 EMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDV 186 (970)
T ss_pred EeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCE
Confidence 333333343 4444444322 4456888899999988888877653 78899999999988876443 2679
Q ss_pred EEEcCC
Q psy1621 144 LITTDL 149 (224)
Q Consensus 144 lv~t~~ 149 (224)
+++|+-
T Consensus 187 VygTPg 192 (970)
T PRK12899 187 VYGTAS 192 (970)
T ss_pred EEECCC
Confidence 999984
No 264
>PRK13767 ATP-dependent helicase; Provisional
Probab=68.94 E-value=16 Score=35.04 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=48.1
Q ss_pred CcEEEEeCchHHHHHHHHHHHh---------------C-CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCc-c--
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLK---------------K-EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLL-A-- 151 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~---------------~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~-~-- 151 (224)
.++|+.+++++-+..+++.|.+ . ++.+...||+.+..++.+.++ ....|+|+|+-- .
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecHHHHHHH
Confidence 4699999999998887765431 1 557889999999888766543 346799999831 1
Q ss_pred ---cCC--CCCCCCEEEE
Q psy1621 152 ---RGI--DVQQVSLVIN 164 (224)
Q Consensus 152 ---~Gv--di~~~~~vi~ 164 (224)
... .+.++.+||.
T Consensus 161 l~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIV 178 (876)
T ss_pred hcChhHHHHHhcCCEEEE
Confidence 111 3456777764
No 265
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=68.61 E-value=14 Score=25.53 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=29.6
Q ss_pred CCCcEEEEeCc-hHHHHHHHHHHHhCCCe-EEEecCCCC
Q psy1621 89 SITQAVIFCNT-RRKVDWLTESMLKKEFT-VSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t-~~~~~~l~~~L~~~~~~-~~~~~g~~~ 125 (224)
+..++++||.+ -..+...+..|...|+. +..+.|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 46789999988 47788888889888864 888888863
No 266
>KOG0352|consensus
Probab=68.27 E-value=18 Score=31.56 Aligned_cols=86 Identities=10% Similarity=0.105 Sum_probs=62.7
Q ss_pred ceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC--C
Q psy1621 63 RIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG--S 140 (224)
Q Consensus 63 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~--~ 140 (224)
.....|+..+....|- +..++=.-..++-+|||.+-.+-...=-.+|..+..++..++++|+..||.+++.+++.. .
T Consensus 35 ~k~DVyVsMPTGaGKS-LCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~ 113 (641)
T KOG0352|consen 35 RKCDVYVSMPTGAGKS-LCYQLPALVHGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPT 113 (641)
T ss_pred ccCcEEEeccCCCchh-hhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCc
Confidence 4455677776655442 222222222456899999988888777788889999999999999999999999999865 4
Q ss_pred ceEEEEcCC
Q psy1621 141 SRVLITTDL 149 (224)
Q Consensus 141 ~~ilv~t~~ 149 (224)
+++|--|+.
T Consensus 114 ~K~LYITPE 122 (641)
T KOG0352|consen 114 IKMLYITPE 122 (641)
T ss_pred eeEEEEchh
Confidence 467776763
No 267
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=67.94 E-value=29 Score=33.28 Aligned_cols=63 Identities=8% Similarity=0.018 Sum_probs=46.7
Q ss_pred HHHhccCCCCcEEEEeCchHH----HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q psy1621 82 CDLYGTLSITQAVIFCNTRRK----VDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLL 150 (224)
Q Consensus 82 ~~ll~~~~~~~~iIf~~t~~~----~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~ 150 (224)
.-++....+..+-|.+.+.-- ++++...+...|+.+..+.+++++++|..+.. .+|+.+|...
T Consensus 115 ~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e 181 (913)
T PRK13103 115 AVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNNE 181 (913)
T ss_pred HHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEcccc
Confidence 344456678888888887544 45555556667999999999999999997776 5788887643
No 268
>PRK00254 ski2-like helicase; Provisional
Probab=66.84 E-value=29 Score=32.46 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=58.3
Q ss_pred EEEEEecCCccHHHHH-HHHhccC--CCCcEEEEeCchHHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 66 QFYIYIEREDWKFDTL-CDLYGTL--SITQAVIFCNTRRKVDWLTESMLK---KEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~l-~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
..++..+....|.... .-++... .+.++|+.+++++-+...++.+.. .+.++..++|+.+...+ + .+
T Consensus 41 nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~-~~ 113 (720)
T PRK00254 41 NLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE------W-LG 113 (720)
T ss_pred cEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh------h-hc
Confidence 3455555555566543 3333322 457899999999999998887764 47889999999875422 1 14
Q ss_pred CceEEEEcCC-----cccC-CCCCCCCEEEE
Q psy1621 140 SSRVLITTDL-----LARG-IDVQQVSLVIN 164 (224)
Q Consensus 140 ~~~ilv~t~~-----~~~G-vdi~~~~~vi~ 164 (224)
+..|+|+|+. +..+ ..+.++..||.
T Consensus 114 ~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvVi 144 (720)
T PRK00254 114 KYDIIIATAEKFDSLLRHGSSWIKDVKLVVA 144 (720)
T ss_pred cCCEEEEcHHHHHHHHhCCchhhhcCCEEEE
Confidence 5689999962 2211 23456676664
No 269
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=65.67 E-value=84 Score=29.22 Aligned_cols=104 Identities=11% Similarity=0.131 Sum_probs=69.7
Q ss_pred ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC-CCe-EEEe--------------------c-----CCCCHH
Q psy1621 75 DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK-EFT-VSAM--------------------H-----GDMDQN 127 (224)
Q Consensus 75 ~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~-~~~-~~~~--------------------~-----g~~~~~ 127 (224)
..|.-.+..++... +.++||.++++..|..++..|+.. +.+ +.++ + ..--..
T Consensus 40 s~kt~~~a~~~~~~-~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i~~ 118 (655)
T TIGR00631 40 SGKTFTMANVIAQV-NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIER 118 (655)
T ss_pred cHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCChHHHH
Confidence 33766677766654 368999999999999999999776 223 4443 1 111134
Q ss_pred HHHHHHHHhhcCCceEEEEcCCcccCCCCCC----CCEEEEeCCCCChhHHHHHHh
Q psy1621 128 ARDVIMRQFRSGSSRVLITTDLLARGIDVQQ----VSLVINYDLPSNRENYIHRIG 179 (224)
Q Consensus 128 ~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~----~~~vi~~~~p~s~~~~~q~~G 179 (224)
.|..++.++.+++..|+|+|-.+-.|+=-|. ....+..+...+...+..+.-
T Consensus 119 ~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv 174 (655)
T TIGR00631 119 LRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLV 174 (655)
T ss_pred HHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHH
Confidence 6788888888887778888865566665453 345566676777766655543
No 270
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=65.46 E-value=33 Score=32.65 Aligned_cols=59 Identities=12% Similarity=0.028 Sum_probs=44.4
Q ss_pred hccCCCCcEEEEeCchHHHHHHHHHH----HhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 85 YGTLSITQAVIFCNTRRKVDWLTESM----LKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 85 l~~~~~~~~iIf~~t~~~~~~l~~~L----~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
+..+.+..+-|.++|..-|..-++.+ ...|+.+..+.|+++.++|..... ..|+++|+.
T Consensus 117 l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~ 179 (830)
T PRK12904 117 LNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTNN 179 (830)
T ss_pred HHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc
Confidence 34556677888899877666655554 445899999999999999887743 678888873
No 271
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=64.98 E-value=28 Score=23.79 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=28.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
..++++||.+-..+...+..|.+.|+......||+.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 457999999988888889999988886555567753
No 272
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=64.37 E-value=54 Score=23.97 Aligned_cols=78 Identities=18% Similarity=0.110 Sum_probs=47.0
Q ss_pred EEEEecCCccHHHHHHHHhc----cCCCCcEEEEeCchHHHHHHHHHHHhCC-----CeEEEecCCCCHHHHHHHHHHhh
Q psy1621 67 FYIYIEREDWKFDTLCDLYG----TLSITQAVIFCNTRRKVDWLTESMLKKE-----FTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~----~~~~~~~iIf~~t~~~~~~l~~~L~~~~-----~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
.++..+....|...+...+. .....++++.+++...+..+.+.+.+.. .....+++... ...++.+.
T Consensus 27 ~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 102 (201)
T smart00487 27 VILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLE 102 (201)
T ss_pred EEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHh
Confidence 34444444557774443332 2234689999999999888888776654 33444555432 23344555
Q ss_pred cCCceEEEEcC
Q psy1621 138 SGSSRVLITTD 148 (224)
Q Consensus 138 ~~~~~ilv~t~ 148 (224)
++...++++|.
T Consensus 103 ~~~~~v~~~t~ 113 (201)
T smart00487 103 SGKTDILVTTP 113 (201)
T ss_pred cCCCCEEEeCh
Confidence 66558888883
No 273
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=63.98 E-value=38 Score=22.18 Aligned_cols=45 Identities=9% Similarity=0.027 Sum_probs=30.8
Q ss_pred CCCcEEEEeC------chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHH
Q psy1621 89 SITQAVIFCN------TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIM 133 (224)
Q Consensus 89 ~~~~~iIf~~------t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~ 133 (224)
...+++||.. ...-|..+.+.|.+.++....+.=....+.+..+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~ 56 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLK 56 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHH
Confidence 3479999986 56678888899999988766665433444444333
No 274
>KOG0346|consensus
Probab=63.78 E-value=19 Score=31.58 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=44.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC------CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-----cccCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK------EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL-----LARGID 155 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~-----~~~Gvd 155 (224)
+...+|.++|++-|..+++.+.+. .+++.=+.+.|+..+.. .+-.+...|+|+|+. +..|+.
T Consensus 93 ~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~pdIvV~TP~~ll~~~~~~~~ 165 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDLPDIVVATPAKLLRHLAAGVL 165 (569)
T ss_pred cceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccCCCeEEeChHHHHHHHhhccc
Confidence 557999999999999999887664 23444455667666544 445677889999983 566664
No 275
>KOG0337|consensus
Probab=63.72 E-value=40 Score=29.40 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=50.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCC----CeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC------CcccCCCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKE----FTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD------LLARGIDVQQ 158 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~----~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~------~~~~Gvdi~~ 158 (224)
.+-+.+|.++|++-+....+..+..+ .+...+.|+.+.+++-..+ ++..+|++||+ ..++-+++..
T Consensus 89 ~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l----~~npDii~ATpgr~~h~~vem~l~l~s 164 (529)
T KOG0337|consen 89 TGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILL----NENPDIIIATPGRLLHLGVEMTLTLSS 164 (529)
T ss_pred cccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHh----ccCCCEEEecCceeeeeehheeccccc
Confidence 35689999999999888887776653 3566666775554433222 34567899998 4566677888
Q ss_pred CCEEEEe
Q psy1621 159 VSLVINY 165 (224)
Q Consensus 159 ~~~vi~~ 165 (224)
+.+|++-
T Consensus 165 veyVVfd 171 (529)
T KOG0337|consen 165 VEYVVFD 171 (529)
T ss_pred eeeeeeh
Confidence 8888853
No 276
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=63.28 E-value=18 Score=26.33 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=54.5
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEE-cCCcc
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLIT-TDLLA 151 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~-t~~~~ 151 (224)
..+...+.+++... .+.+++|.|.+.++++.+-+.|-.......+-|+-.... ......|+++ ++..
T Consensus 12 ~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~l~~~~~~- 81 (142)
T PRK05728 12 SALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVLLTWPGKR- 81 (142)
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEEEEcCCCC-
Confidence 34888888888654 688999999999999999999988766666677642221 0123468887 3221
Q ss_pred cCCCCCCCCEEEEeCC
Q psy1621 152 RGIDVQQVSLVINYDL 167 (224)
Q Consensus 152 ~Gvdi~~~~~vi~~~~ 167 (224)
+.++...+|+.+.
T Consensus 82 ---~~~~~~~LinL~~ 94 (142)
T PRK05728 82 ---NANHRDLLINLDG 94 (142)
T ss_pred ---CCCCCcEEEECCC
Confidence 3345566777764
No 277
>PLN02160 thiosulfate sulfurtransferase
Probab=61.93 E-value=15 Score=26.41 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=31.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+..+++++|.+-.++...+..|.+.|+ ++..+.||+.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 456899999999999999999999988 4777888853
No 278
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=61.48 E-value=54 Score=23.01 Aligned_cols=55 Identities=18% Similarity=0.089 Sum_probs=36.8
Q ss_pred cEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 92 QAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 92 ~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
.++|=+.+.+.+....+.+.+++..+..-+.+.++++...+.+ +.+. ..++++.+
T Consensus 69 DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~-~a~~-~~vl~a~N 123 (124)
T PF01113_consen 69 DVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE-LAKK-IPVLIAPN 123 (124)
T ss_dssp SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH-HTTT-SEEEE-SS
T ss_pred CEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-Hhcc-CCEEEeCC
Confidence 3666666888888888888888999888888887766554444 4333 78888765
No 279
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=61.40 E-value=15 Score=25.52 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=30.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCCH
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMDQ 126 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~~ 126 (224)
+..+++++|.+-..+...+..|...|+. +..+.||+..
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4578999999888888899999999874 6668888654
No 280
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=60.46 E-value=30 Score=27.88 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=29.6
Q ss_pred HHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCC
Q psy1621 77 KFDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEF 115 (224)
Q Consensus 77 k~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~ 115 (224)
-.+++..+.+.+ +++.+++|+++.++++.+.+.|++.|+
T Consensus 174 PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 174 PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 445555544444 468899999999999999999988754
No 281
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=60.45 E-value=21 Score=24.25 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=28.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~ 124 (224)
...+++++|.+-..+...+..|.+.|+.-...-||+
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 345788999998888889999999998644445774
No 282
>COG1204 Superfamily II helicase [General function prediction only]
Probab=60.44 E-value=49 Score=31.30 Aligned_cols=77 Identities=19% Similarity=0.133 Sum_probs=53.8
Q ss_pred eEEEEEecCCccHHHH-HHHHhccCC--CCcEEEEeCchHHHHHHHHHHH---hCCCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 65 RQFYIYIEREDWKFDT-LCDLYGTLS--ITQAVIFCNTRRKVDWLTESML---KKEFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 65 ~~~~~~~~~~~~k~~~-l~~ll~~~~--~~~~iIf~~t~~~~~~l~~~L~---~~~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
....+..++...|... +.-+++... ++++|-.|++++-|++.++.++ ..|+++..++|++..... .-
T Consensus 48 ~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~-------~l 120 (766)
T COG1204 48 ENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE-------RL 120 (766)
T ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchh-------hh
Confidence 3345556665556543 333444432 5799999999999999999887 679999999999874321 11
Q ss_pred CCceEEEEcC
Q psy1621 139 GSSRVLITTD 148 (224)
Q Consensus 139 ~~~~ilv~t~ 148 (224)
.+..|+|+|+
T Consensus 121 ~~~~ViVtT~ 130 (766)
T COG1204 121 ARYDVIVTTP 130 (766)
T ss_pred ccCCEEEEch
Confidence 4567999997
No 283
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=60.37 E-value=35 Score=32.67 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=82.3
Q ss_pred eEEEEEecCCccHHHH-HHHHhccC---CCCcEEEEeCchHHHH----HHHHHHHhCC--CeEEEecCCCCHHHHHHHHH
Q psy1621 65 RQFYIYIEREDWKFDT-LCDLYGTL---SITQAVIFCNTRRKVD----WLTESMLKKE--FTVSAMHGDMDQNARDVIMR 134 (224)
Q Consensus 65 ~~~~~~~~~~~~k~~~-l~~ll~~~---~~~~~iIf~~t~~~~~----~l~~~L~~~~--~~~~~~~g~~~~~~r~~~~~ 134 (224)
++.++...+...|-+. +.-++.+. +..+.|++.+|++-+. .+.+.+...+ +++..|+|+.++++|+
T Consensus 86 ~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~---- 161 (851)
T COG1205 86 RNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR---- 161 (851)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----
Confidence 3445555555556543 33333332 3447799999987654 4555555555 7899999999999887
Q ss_pred HhhcCCceEEEEcCC-c----ccCCCC-----CCCCEEEE-----eCCC--CChhHHHHHHhhccCCCCcceEEEEeccc
Q psy1621 135 QFRSGSSRVLITTDL-L----ARGIDV-----QQVSLVIN-----YDLP--SNRENYIHRIGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 135 ~f~~~~~~ilv~t~~-~----~~Gvdi-----~~~~~vi~-----~~~p--~s~~~~~q~~GR~~R~g~~~~~~~~~~~~ 197 (224)
.+..+..+||++++. + -+.-+- ....+||. |+.- .++.-.+-|..|..|.+.....++..+.-
T Consensus 162 ~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT 241 (851)
T COG1205 162 AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSAT 241 (851)
T ss_pred HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 556778899999862 2 222221 23555553 2222 23444555555544443344444445554
Q ss_pred cHHHHHHHHHHhcccccc
Q psy1621 198 DKRTLKDTEQFYNTRIEE 215 (224)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~ 215 (224)
-.......++.++..+..
T Consensus 242 ~~np~e~~~~l~~~~f~~ 259 (851)
T COG1205 242 LANPGEFAEELFGRDFEV 259 (851)
T ss_pred ccChHHHHHHhcCCccee
Confidence 334444455555555554
No 284
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=59.63 E-value=30 Score=27.90 Aligned_cols=86 Identities=9% Similarity=0.224 Sum_probs=54.4
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCC---CeEEEecCCC-CHHHHHHHHHHhhcCCceEEEEcCC-----ccc-CCCCCCCC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKKE---FTVSAMHGDM-DQNARDVIMRQFRSGSSRVLITTDL-----LAR-GIDVQQVS 160 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~~---~~~~~~~g~~-~~~~r~~~~~~f~~~~~~ilv~t~~-----~~~-Gvdi~~~~ 160 (224)
..+||.|.+--.|-.+.+.|+... ..++-+.+.- .-++.... .+++...|.|+|+. ++. .+.+.+..
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~---L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKL---LKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHH---HHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 458888999999999999998752 4455555542 44444433 35567889999982 233 36666766
Q ss_pred EEE------------EeCCCCChhHHHHHHh
Q psy1621 161 LVI------------NYDLPSNRENYIHRIG 179 (224)
Q Consensus 161 ~vi------------~~~~p~s~~~~~q~~G 179 (224)
+|| .+|.|.+...+.+..+
T Consensus 204 ~ivlD~s~~D~K~~~i~d~~e~~~~l~~lL~ 234 (252)
T PF14617_consen 204 RIVLDWSYLDQKKRSIFDIPETREDLWKLLY 234 (252)
T ss_pred EEEEcCCccccccccccccHHHHHHHHHHHh
Confidence 665 3445555555545444
No 285
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=58.82 E-value=28 Score=25.02 Aligned_cols=46 Identities=4% Similarity=-0.034 Sum_probs=30.4
Q ss_pred HHHHHhccC---CCCcEEEEeCc---hHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 80 TLCDLYGTL---SITQAVIFCNT---RRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 80 ~l~~ll~~~---~~~~~iIf~~t---~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
.+.+++... +..++|+||.+ -..+..++-.|+..|. ++..+.|+++
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 455555443 46789999975 3445566666777775 5788888854
No 286
>KOG0351|consensus
Probab=57.32 E-value=32 Score=33.26 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=51.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC--CceEEEEcC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG--SSRVLITTD 148 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~--~~~ilv~t~ 148 (224)
++-+||..+-.+-.+.-...|.+.++.+.+++|++...+|..+++.+.+| .++|+-.|+
T Consensus 304 ~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 304 GGVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred CCceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 34677777888888888888888899999999999999999999999999 778888887
No 287
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=57.05 E-value=32 Score=23.18 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=29.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~ 125 (224)
...+++++|.+-..+...+..|+..|+. +..+.|++.
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 3567888998878888888899988885 778888863
No 288
>PRK01415 hypothetical protein; Validated
Probab=56.44 E-value=24 Score=28.32 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=32.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCCH
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMDQ 126 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~~ 126 (224)
+..++++||.+-..|+..+..|.+.|+. +..+.||+..
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~ 208 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQ 208 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHH
Confidence 4578999999999999999999999985 8888998643
No 289
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=56.38 E-value=25 Score=29.30 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=33.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCCH
Q psy1621 88 LSITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMDQ 126 (224)
Q Consensus 88 ~~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~~ 126 (224)
.+..++++||.+-..++..+.+|.+.|+ ++..+.||+..
T Consensus 169 ~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 169 LKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred CCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 3567899999998889999999999998 48889999754
No 290
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=55.80 E-value=1.1e+02 Score=24.98 Aligned_cols=67 Identities=9% Similarity=0.023 Sum_probs=49.0
Q ss_pred cEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCC
Q psy1621 92 QAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVS 160 (224)
Q Consensus 92 ~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~ 160 (224)
--+|+|..+..+..+-+.+.-. .....+|-....+....+++....|+. |.+.+|+.--++.-|+..
T Consensus 26 ~d~i~~EDTR~t~kLL~~~~I~-~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~ISDPG~~ 92 (276)
T TIGR00096 26 VDLFAEEDTRTSKLLLHLGIIA-TPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPLISDPGHL 92 (276)
T ss_pred CCEEEecCchhHHHHHHhcCCC-CceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCCcCCccHH
Confidence 3478898888777766665322 245678877777777788888888865 888899988888888644
No 291
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=55.42 E-value=27 Score=28.39 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=35.1
Q ss_pred HHHHHHhccC---CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 79 DTLCDLYGTL---SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 79 ~~l~~ll~~~---~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+.|..++... +..++|+||++-..+..++..|...|+ ++..|.|++.
T Consensus 217 ~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 217 DELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH
Confidence 4444444432 456899999998888888888988888 4888999853
No 292
>PRK01172 ski2-like helicase; Provisional
Probab=54.90 E-value=60 Score=30.08 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=55.8
Q ss_pred EEEEecCCccHHHHHH-HHhccC-CCCcEEEEeCchHHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 67 FYIYIEREDWKFDTLC-DLYGTL-SITQAVIFCNTRRKVDWLTESMLK---KEFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~-~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
.++..+....|-.... -++... .+.++|+.+++++-+...++.+.+ .+..+...+|+.....+ .+ ...
T Consensus 40 vlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~--~~~ 112 (674)
T PRK01172 40 VIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD-----FI--KRY 112 (674)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh-----hh--ccC
Confidence 4555555556765432 222222 357899999999999988887754 47788888887654321 11 245
Q ss_pred eEEEEcCC-----ccc-CCCCCCCCEEEE
Q psy1621 142 RVLITTDL-----LAR-GIDVQQVSLVIN 164 (224)
Q Consensus 142 ~ilv~t~~-----~~~-Gvdi~~~~~vi~ 164 (224)
+|+|+|+. ... ...+.++..||.
T Consensus 113 dIiv~Tpek~~~l~~~~~~~l~~v~lvVi 141 (674)
T PRK01172 113 DVVILTSEKADSLIHHDPYIINDVGLIVA 141 (674)
T ss_pred CEEEECHHHHHHHHhCChhHHhhcCEEEE
Confidence 79999972 222 223556666663
No 293
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=54.84 E-value=9.4 Score=25.49 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=23.8
Q ss_pred HHHHhCCCeEEEe----cCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 108 ESMLKKEFTVSAM----HGDMDQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 108 ~~L~~~~~~~~~~----~g~~~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
++|++.|+.+..+ +.+-.+.-+..+.+.++++++.++|.|..
T Consensus 24 ~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 24 KFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred HHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 5667778873333 32312333446899999999887776653
No 294
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=54.74 E-value=62 Score=21.63 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=30.0
Q ss_pred CCcEEEEeC------chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHH
Q psy1621 90 ITQAVIFCN------TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIM 133 (224)
Q Consensus 90 ~~~~iIf~~------t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~ 133 (224)
.++++||.. ...-|..+.+.|.+.++....+.=...++.+..+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~ 60 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIK 60 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 479999974 46677888899998888766655433454444433
No 295
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=54.08 E-value=42 Score=24.85 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=54.1
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLAR 152 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~ 152 (224)
..+...+.+++... .+.+++|.|.+.++++.+=+.|-........-|+...... .....|+++++.-
T Consensus 12 ~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~---------~a~~PV~L~~~~~-- 80 (154)
T PRK06646 12 ELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ---------PEKQPIYITDELQ-- 80 (154)
T ss_pred ChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC---------CCCCCEEEecCCC--
Confidence 34888888888654 6889999999999999999999777666666777422210 1234688874432
Q ss_pred CCCCCCCCEEEEeCC
Q psy1621 153 GIDVQQVSLVINYDL 167 (224)
Q Consensus 153 Gvdi~~~~~vi~~~~ 167 (224)
+.+ +.+.+|+.+.
T Consensus 81 ~p~--~~~vLiNL~~ 93 (154)
T PRK06646 81 NPN--NASVLVIISP 93 (154)
T ss_pred CCC--CCCEEEECCC
Confidence 222 4556777765
No 296
>PHA03371 circ protein; Provisional
Probab=53.97 E-value=11 Score=29.52 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=30.8
Q ss_pred CcccCCCCCCCCEE-EEeCCC-------------CChhHHHHHHhhccCCCCcceEEEEecc
Q psy1621 149 LLARGIDVQQVSLV-INYDLP-------------SNRENYIHRIGRGGRFGRKGVAINFVTA 196 (224)
Q Consensus 149 ~~~~Gvdi~~~~~v-i~~~~p-------------~s~~~~~q~~GR~~R~g~~~~~~~~~~~ 196 (224)
..++-||+|+-+-+ |..+.+ .+.-.|.|.+|||.-.|....-++|...
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iyl~r 90 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIYLSR 90 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEEEcc
Confidence 45677888877765 433322 2455689999999877765555555444
No 297
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=53.34 E-value=22 Score=23.75 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=25.6
Q ss_pred CCCcEEEEeCchHHHHHHHHH-----HHhCCC-eEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTES-----MLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~-----L~~~~~-~~~~~~g~~~ 125 (224)
....+|+||.+.......+.. |.+.|+ ++..+.||+.
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 455688889655555554444 777777 8999999864
No 298
>KOG0385|consensus
Probab=52.93 E-value=1.1e+02 Score=28.96 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=41.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFR-SGSSRVLITTD 148 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~-~~~~~ilv~t~ 148 (224)
.++|-||.|+-.. ...+.+.+.+. ++++..+||. .++|....+.+. .++..|+|+|.
T Consensus 216 ~~GPfLVi~P~St-L~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 216 IPGPFLVIAPKST-LDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CCCCeEEEeeHhh-HHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 3689999997543 44444444444 6789999997 688888888865 56888999986
No 299
>KOG1132|consensus
Probab=52.86 E-value=2.2e+02 Score=27.45 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=44.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC-------CCeEEEecCCCCHHHHHHHHHHhhc--------CCceEEEEcCCcccCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK-------EFTVSAMHGDMDQNARDVIMRQFRS--------GSSRVLITTDLLARGI 154 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~r~~~~~~f~~--------~~~~ilv~t~~~~~Gv 154 (224)
+...|||+++-...+.+...+... +..- .+.+--+..+=.+++.+|.+ |-.-..||---.++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 455999999887766664433221 1110 11111122222333444432 2234566677899999
Q ss_pred CCCC--CCEEEEeCCCC
Q psy1621 155 DVQQ--VSLVINYDLPS 169 (224)
Q Consensus 155 di~~--~~~vi~~~~p~ 169 (224)
|+.+ .+.||..+.|.
T Consensus 640 DFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPY 656 (945)
T ss_pred CccccCCceeEEecCCC
Confidence 9976 56788888775
No 300
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=52.77 E-value=33 Score=28.63 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=34.9
Q ss_pred HHHHHHhccC---CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 79 DTLCDLYGTL---SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 79 ~~l~~ll~~~---~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+.|.+++... +..++|+||++-..+..++-.|+..|+ ++..|.|++.
T Consensus 255 ~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 255 EELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 4455555432 467899999998888888888888887 4788999853
No 301
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=52.66 E-value=1.6e+02 Score=27.43 Aligned_cols=105 Identities=10% Similarity=0.164 Sum_probs=67.9
Q ss_pred ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC-CCe-EEEe--------------------cCC--CC---HH
Q psy1621 75 DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK-EFT-VSAM--------------------HGD--MD---QN 127 (224)
Q Consensus 75 ~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~-~~~-~~~~--------------------~g~--~~---~~ 127 (224)
..|.-.+..++... +.++||.+++...++.+++.|... +.. +.++ +.. -+ ..
T Consensus 43 s~ka~lia~l~~~~-~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~~ 121 (652)
T PRK05298 43 SGKTFTMANVIARL-QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIER 121 (652)
T ss_pred cHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHHH
Confidence 33666666666543 468999999999999999998765 222 4433 111 11 34
Q ss_pred HHHHHHHHhhcCCceEEEEcCCcccCCCCCC----CCEEEEeCCCCChhHHHHHHhh
Q psy1621 128 ARDVIMRQFRSGSSRVLITTDLLARGIDVQQ----VSLVINYDLPSNRENYIHRIGR 180 (224)
Q Consensus 128 ~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~----~~~vi~~~~p~s~~~~~q~~GR 180 (224)
.|.+++.++.+++..|+|+|..+-.++=-|. ....+..+...+...+..+.-.
T Consensus 122 ~R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~ 178 (652)
T PRK05298 122 LRHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVD 178 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHH
Confidence 6788899988877777777754446655443 3345667777777766655543
No 302
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=52.64 E-value=90 Score=22.87 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=35.7
Q ss_pred cEEEEeCc-------hHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 92 QAVIFCNT-------RRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 92 ~~iIf~~t-------~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
+++||+.+ ...+..+.+.|.++++.+..+.=.+..+.++++.+...
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 35677765 78899999999999998888887788877777665543
No 303
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=52.00 E-value=22 Score=24.87 Aligned_cols=37 Identities=5% Similarity=0.255 Sum_probs=27.3
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHHhC------------CC-eEEEecCCCC
Q psy1621 89 SITQAVIFCN-TRRKVDWLTESMLKK------------EF-TVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~-t~~~~~~l~~~L~~~------------~~-~~~~~~g~~~ 125 (224)
+..+++++|. +-..+...+..|++. |+ .+..+.||+.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 4567899996 766777777787763 44 6888889864
No 304
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=51.83 E-value=26 Score=22.98 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=27.5
Q ss_pred HHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 107 TESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 107 ~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
+++|++.|+.+..++..... .+..+.+.+++|++..+|.|+.
T Consensus 23 a~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 23 AKFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCC
Confidence 35566778776434433321 1235888999999998888764
No 305
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=51.23 E-value=49 Score=24.56 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=27.9
Q ss_pred CCCcEEEEeCchH-HHHHHHHHHHhCCCe-EEEecCCC
Q psy1621 89 SITQAVIFCNTRR-KVDWLTESMLKKEFT-VSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~-~~~~l~~~L~~~~~~-~~~~~g~~ 124 (224)
+..++|+||.+-. .+...+..|.+.|+. +..+.||+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~ 152 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGT 152 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCH
Confidence 5678999999753 566677888888885 77888985
No 306
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=50.48 E-value=59 Score=20.13 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=35.4
Q ss_pred EEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 93 AVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 93 ~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
.++.|.....+..+.+.... +..+....|.....+....++.+... ..|++++|.-..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~~-~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGF-GGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCC-CEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 46777777777777766521 22444444554445555566665444 5688888865554
No 307
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=49.80 E-value=91 Score=26.41 Aligned_cols=48 Identities=8% Similarity=0.261 Sum_probs=36.2
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 89 SITQAVIFCN-TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 89 ~~~~~iIf~~-t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
+..+++|||. +-..+..++..|...|+.+..+.||+.. -|...++.+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~a-wr~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKA-YRRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHH-HHHhhHHHHh
Confidence 4578999995 5566778888999999999999999754 3555555554
No 308
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=49.73 E-value=91 Score=24.09 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=43.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHH--------HHHHHHHHhhcCCc-eEEEEcCCcccC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQN--------ARDVIMRQFRSGSS-RVLITTDLLARG 153 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~--------~r~~~~~~f~~~~~-~ilv~t~~~~~G 153 (224)
+.+++|..+.+.+.+..+.+. ....-...++||.+++- .-...+++...+.+ -|++||+.-.+|
T Consensus 77 Rd~~~icVVe~p~Dv~a~E~~-~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 77 RDKSQLCVVEEPKDVLALEKT-GEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred cCCceEEEEcchHHHHHHHHh-cccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 345678888888888766554 23333566777766543 23566777888888 899999876555
No 309
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=49.44 E-value=74 Score=30.10 Aligned_cols=58 Identities=24% Similarity=0.143 Sum_probs=40.3
Q ss_pred ccCCCCcEEEEeCchHHHHHHHHHH----HhCCCeEEEecCC-----CCHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 86 GTLSITQAVIFCNTRRKVDWLTESM----LKKEFTVSAMHGD-----MDQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 86 ~~~~~~~~iIf~~t~~~~~~l~~~L----~~~~~~~~~~~g~-----~~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
....+..++|.++++.-|...++.+ ...|..+...+++ +.+++|..+ ....|+++|+.
T Consensus 107 ~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~------y~~dIvygTp~ 173 (762)
T TIGR03714 107 NALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKI------YNSDIVYTTNS 173 (762)
T ss_pred HhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHh------CCCCEEEECch
Confidence 3445678999999998888877776 4458888776664 445554433 23678888874
No 310
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=49.39 E-value=20 Score=24.01 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=29.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEE-EecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVS-AMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~-~~~g~~ 124 (224)
...+++++|.+-......++.|++.|+... .+.|++
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~ 96 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGI 96 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcH
Confidence 357899999999999999999999988765 666764
No 311
>PF07013 DUF1314: Protein of unknown function (DUF1314); InterPro: IPR010741 This family consists of several alphaherpesvirus proteins of around 200 residues in length. They belong to the varicellovirus ORF2 family and their function is unknown.
Probab=49.00 E-value=25 Score=26.32 Aligned_cols=48 Identities=23% Similarity=0.176 Sum_probs=29.7
Q ss_pred CcccCCCCCCCCEEEEe-----------CCC-CChhHHHHHHhhccCCCCcceEEEEecc
Q psy1621 149 LLARGIDVQQVSLVINY-----------DLP-SNRENYIHRIGRGGRFGRKGVAINFVTA 196 (224)
Q Consensus 149 ~~~~Gvdi~~~~~vi~~-----------~~p-~s~~~~~q~~GR~~R~g~~~~~~~~~~~ 196 (224)
..++-+|+|+-+.+.++ -.+ .+...+.+.+|||.-.|....-+++...
T Consensus 8 LaGR~iDLPgG~el~I~~~~g~~~~~~f~~~g~~~~~~~~~IGRA~a~g~~RkF~iy~~~ 67 (177)
T PF07013_consen 8 LAGRTIDLPGGDELRISANTGRPNTGKFVRSGSSRLMPVHFIGRAYAIGSCRKFVIYLSR 67 (177)
T ss_pred hcCcceecCCCCeEEEecCCCCceEEEEecCCCCceehhheehhhhccCCCceEEEEEcc
Confidence 45677888876654322 222 2556789999999877755444444433
No 312
>KOG1180|consensus
Probab=48.85 E-value=1.3e+02 Score=27.39 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=54.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC-----CCCCCCCEEEE
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARG-----IDVQQVSLVIN 164 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G-----vdi~~~~~vi~ 164 (224)
..++.||+.|++.=...+.-+...++.+...+..+..+ .++..+.+-+...+++.+.+-.- -.++.+.+||+
T Consensus 115 e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGee---al~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~ 191 (678)
T KOG1180|consen 115 ETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEE---ALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIY 191 (678)
T ss_pred CCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChh---hhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEE
Confidence 44699999999987777777778899999999887763 45677777777778876632211 23467788888
Q ss_pred eCC
Q psy1621 165 YDL 167 (224)
Q Consensus 165 ~~~ 167 (224)
++.
T Consensus 192 ~d~ 194 (678)
T KOG1180|consen 192 FDP 194 (678)
T ss_pred ecC
Confidence 884
No 313
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=48.70 E-value=51 Score=23.14 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=28.4
Q ss_pred CCCcEEEEeCchHH---------HHHHHHHHHh---CCCeEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRK---------VDWLTESMLK---KEFTVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~---------~~~l~~~L~~---~~~~~~~~~g~~~ 125 (224)
...++|||+.+... +..+.+.|.. .+.++.++.||+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 56789999986654 7777788877 4568999999963
No 314
>PF13245 AAA_19: Part of AAA domain
Probab=48.34 E-value=45 Score=21.25 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=27.1
Q ss_pred ccHHHHHHHHhccC------CCCcEEEEeCchHHHHHHHHHH
Q psy1621 75 DWKFDTLCDLYGTL------SITQAVIFCNTRRKVDWLTESM 110 (224)
Q Consensus 75 ~~k~~~l~~ll~~~------~~~~~iIf~~t~~~~~~l~~~L 110 (224)
..|-..+...+... .+.++++.+.++..++.+.+.+
T Consensus 21 tGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 21 TGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34776665555433 2678999999999999999998
No 315
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=48.32 E-value=63 Score=19.83 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=32.8
Q ss_pred EEEEe-CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 93 AVIFC-NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 93 ~iIf~-~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
+.+|. +....|..+.+.|.+.++....+.-...++.+....+...
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~ 47 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSG 47 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 44555 5677888899999999998888887776666666555443
No 316
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=46.87 E-value=68 Score=19.78 Aligned_cols=54 Identities=7% Similarity=0.039 Sum_probs=35.1
Q ss_pred cEEEEe-CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 92 QAVIFC-NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 92 ~~iIf~-~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
++.+|+ ++...|..+.+.|.+.++....+.=...++.+..+.+.-.......++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~ 56 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIF 56 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 455555 457889999999999999888777665555555554443333444433
No 317
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=46.31 E-value=52 Score=26.44 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=41.8
Q ss_pred ceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCe
Q psy1621 63 RIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFT 116 (224)
Q Consensus 63 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~ 116 (224)
.+...+..++.+-.-+..+.+.+ ..+++...+|+++.+++..+.+.|++.++.
T Consensus 113 ~~DavfLDlp~Pw~~i~~~~~~L-~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 113 DFDAVFLDLPDPWEAIPHAKRAL-KKPGGRICCFSPCIEQVQKTVEALREHGFT 165 (247)
T ss_dssp SEEEEEEESSSGGGGHHHHHHHE--EEEEEEEEEESSHHHHHHHHHHHHHTTEE
T ss_pred cccEEEEeCCCHHHHHHHHHHHH-hcCCceEEEECCCHHHHHHHHHHHHHCCCe
Confidence 45667777777666777777777 224789999999999999999999998763
No 318
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=46.14 E-value=57 Score=26.56 Aligned_cols=90 Identities=10% Similarity=0.239 Sum_probs=56.2
Q ss_pred HHHHHHHHhc--cCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 77 KFDTLCDLYG--TLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 77 k~~~l~~ll~--~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
.-..+.+++. +-+.-++||++....-.....+.+++....+..+-|....+- .++.. ..++.+.++...+|.
T Consensus 47 ~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~EDp--~~i~~----~aDi~~~~D~~~~G~ 120 (275)
T PF12683_consen 47 QETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHEDP--EVISS----AADIVVNPDEISRGY 120 (275)
T ss_dssp HHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S-H--HHHHH----HSSEEEE--HHHHHH
T ss_pred HHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcCCH--HHHhh----ccCeEeccchhhccH
Confidence 3444445543 235678999999998888888888888888888888754321 12222 257899999999998
Q ss_pred CCC------CCCEEEEeCCCCChh
Q psy1621 155 DVQ------QVSLVINYDLPSNRE 172 (224)
Q Consensus 155 di~------~~~~vi~~~~p~s~~ 172 (224)
.++ ++...+|+..|.++.
T Consensus 121 ~i~~~Ak~mGAktFVh~sfprhms 144 (275)
T PF12683_consen 121 TIVWAAKKMGAKTFVHYSFPRHMS 144 (275)
T ss_dssp HHHHHHHHTT-S-EEEEEETTGGG
T ss_pred HHHHHHHHcCCceEEEEechhhcc
Confidence 886 678899999998765
No 319
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=46.08 E-value=1.5e+02 Score=24.20 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=47.5
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC-CCeEEEecCCCCHH-HHHHHHHHhhcC--CceEEEEc
Q psy1621 79 DTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK-EFTVSAMHGDMDQN-ARDVIMRQFRSG--SSRVLITT 147 (224)
Q Consensus 79 ~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~~g~~~~~-~r~~~~~~f~~~--~~~ilv~t 147 (224)
..+.+.+.. ++..+|+...+.+..+.+++.|... +..+.++--+++.. +..++.+..+.. .+.+||..
T Consensus 20 ~~~A~~lA~-~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 20 AELAKQLAR-RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred HHHHHHHHH-CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEEC
Confidence 344444443 4578889999999999999999764 67888888888754 455555556554 66777654
No 320
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=45.12 E-value=1.6e+02 Score=23.58 Aligned_cols=56 Identities=5% Similarity=0.184 Sum_probs=38.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC-CCeEE-EecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK-EFTVS-AMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~-~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
+.++-++-.+...++.+++.|++. +..+. .+||-..+++...++++.+....++|+
T Consensus 105 ~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~ 162 (243)
T PRK03692 105 GTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVT 162 (243)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 345555555666678888888654 56644 567777777878889998877776544
No 321
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=44.90 E-value=46 Score=21.50 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=26.9
Q ss_pred EEEEecCCccHHHHHHHHhccC----------------CCCcEEEEeCchHHHHHHHHHHHhCC
Q psy1621 67 FYIYIEREDWKFDTLCDLYGTL----------------SITQAVIFCNTRRKVDWLTESMLKKE 114 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~~----------------~~~~~iIf~~t~~~~~~l~~~L~~~~ 114 (224)
.++..+++...++.+...+... ..++.+|++.+.+.|+..+..+...+
T Consensus 8 ~vvL~NDe~ht~~~Vi~~L~~~~~~s~~~A~~~a~~v~~~G~avv~~~~~e~ae~~~~~l~~~g 71 (82)
T PF02617_consen 8 RVVLWNDEVHTFEQVIDVLRRVFGCSEEQARQIAMEVHREGRAVVGTGSREEAEEYAEKLQRAG 71 (82)
T ss_dssp EEEEE--SSSBHHHHHHHHHHHC---HHHHHHHHHHHHHHSEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhHcCCEeeeeCCHHHHHHHHHHHHHHh
Confidence 3444455555666655555431 13567777777777777777765543
No 322
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=44.46 E-value=64 Score=24.99 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=46.3
Q ss_pred HHHHHHHHhc-cCCCCcEEEEeCchHHHHHHHHHHHhCCCe---EEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 77 KFDTLCDLYG-TLSITQAVIFCNTRRKVDWLTESMLKKEFT---VSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 77 k~~~l~~ll~-~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~---~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
.-+.|.+.+. ...++++++.+... ....+.+.|++.|.. +.+|.. ..........+.+..+.+.+++-|+
T Consensus 103 ~s~~L~~~l~~~~~~~~vl~~~g~~-~~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~ftS 176 (231)
T PF02602_consen 103 SSEGLAELLKEQLRGKRVLILRGEG-GRPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVFTS 176 (231)
T ss_dssp SHHHHHGGHHHCCTTEEEEEEESSS-SCHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEESS
T ss_pred CHHHHHHHHHhhCCCCeEEEEcCCC-ccHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEECC
Confidence 5566666666 45556666666443 356788899888864 344445 6677788888889888776555444
No 323
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=44.41 E-value=1.8e+02 Score=23.98 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=51.8
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCce
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSR 142 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ 142 (224)
-++.+.+.+++..-+-.+||++-.-.++.+.+.+...-..+.++..+.+..+-.++.+..+.....
T Consensus 53 Vf~tV~EA~~~~~a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~ 118 (293)
T COG0074 53 VFNTVEEAVKETGANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTR 118 (293)
T ss_pred HHHHHHHHHHhhCCCEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCE
Confidence 556666777666667899999999999999998866556788899999998888888777655433
No 324
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=44.27 E-value=1.7e+02 Score=24.34 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=32.7
Q ss_pred cEEEEeC-chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 92 QAVIFCN-TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 92 ~~iIf~~-t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
++++||. +-..+...+..|...|+++..+.||+.. -+......+.
T Consensus 76 ~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~a-w~~~~~~~~~ 121 (311)
T TIGR03167 76 QPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKA-YRRFVIDQLE 121 (311)
T ss_pred cEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHH-HHHhhhhhhh
Confidence 4999995 5667888889999999999899998743 3344444443
No 325
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=43.04 E-value=1.7e+02 Score=27.54 Aligned_cols=58 Identities=12% Similarity=0.319 Sum_probs=39.8
Q ss_pred HHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 83 DLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 83 ~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
+-+++..-+.+++-=.+...++.+++.| ++.-+|+++.|+++.+++++++.....|..
T Consensus 547 ~~L~~~Gi~~~mLTGDn~~~A~~iA~~l-----GId~v~AellPedK~~~V~~l~~~g~~Vam 604 (713)
T COG2217 547 AALKALGIKVVMLTGDNRRTAEAIAKEL-----GIDEVRAELLPEDKAEIVRELQAEGRKVAM 604 (713)
T ss_pred HHHHHCCCeEEEEcCCCHHHHHHHHHHc-----ChHhheccCCcHHHHHHHHHHHhcCCEEEE
Confidence 3344433333333335677788888887 557899999999999999999854444443
No 326
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=42.36 E-value=71 Score=22.10 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=21.5
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHH
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTES 109 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~ 109 (224)
....+.+++... ++|+++||.|-.++-.++..
T Consensus 74 ~v~~f~~~l~~~-~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 74 DVEAFADALESL-PKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HHHHHHHHHHTT-TTSEEEE-SCSHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCEEEECCCChhHHHHHHH
Confidence 444555566554 46999999998888776654
No 327
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=42.20 E-value=33 Score=25.23 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=26.9
Q ss_pred HHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCC
Q psy1621 79 DTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKE 114 (224)
Q Consensus 79 ~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~ 114 (224)
..|.+++++. .+.++||..+|+--++.++++|+...
T Consensus 20 ~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 20 RVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp THHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSS
T ss_pred cccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCC
Confidence 3566666543 57899999999999999999997654
No 328
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=42.13 E-value=1.6e+02 Score=24.76 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=33.6
Q ss_pred ccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 86 GTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 86 ~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
.+..++.+||.-...+-...+.+.|+..|+.+..+-|..--+.-+++...|+
T Consensus 72 ~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~ 123 (337)
T COG2247 72 IELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFR 123 (337)
T ss_pred HhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHH
Confidence 3345577777777777667777777776776666666655555555555553
No 329
>KOG0348|consensus
Probab=41.02 E-value=58 Score=29.44 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=44.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeE-----EEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-------cccCCCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTV-----SAMHGDMDQNARDVIMRQFRSGSSRVLITTDL-------LARGIDVQ 157 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~-----~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~-------~~~Gvdi~ 157 (224)
+--.||.++|++-|..+++.+.+.-..+ +.+-|| +.|+.=-.+++.| ++|||+|+- -...+++.
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGG---EkkKSEKARLRKG-iNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGG---EKKKSEKARLRKG-INILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecc---cccccHHHHHhcC-ceEEEcCchHHHHHHhccchheee
Confidence 4568999999999999999887763222 222233 2222223344555 889999982 33456666
Q ss_pred CCCEEEE
Q psy1621 158 QVSLVIN 164 (224)
Q Consensus 158 ~~~~vi~ 164 (224)
.++++|.
T Consensus 287 ~LRwlVl 293 (708)
T KOG0348|consen 287 RLRWLVL 293 (708)
T ss_pred eeeEEEe
Confidence 6777763
No 330
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=40.60 E-value=2.4e+02 Score=24.93 Aligned_cols=25 Identities=8% Similarity=-0.160 Sum_probs=13.8
Q ss_pred CCccHHHHHHHHhccCCCCcEEEEeC
Q psy1621 73 REDWKFDTLCDLYGTLSITQAVIFCN 98 (224)
Q Consensus 73 ~~~~k~~~l~~ll~~~~~~~~iIf~~ 98 (224)
....|...+..+...... .++||+-
T Consensus 171 sG~GKSTLL~~I~~~~~~-dv~Vi~l 195 (444)
T PRK08972 171 SGVGKSVLLGMMTRGTTA-DVIVVGL 195 (444)
T ss_pred CCCChhHHHHHhccCCCC-CEEEEEE
Confidence 344577777666544332 4566663
No 331
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=40.20 E-value=97 Score=24.93 Aligned_cols=45 Identities=7% Similarity=0.164 Sum_probs=28.7
Q ss_pred EEEecCCccHHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHh
Q psy1621 68 YIYIEREDWKFDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLK 112 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~ 112 (224)
.+.+.....++....+.++.. ..+..|+|+.|++.+....+...+
T Consensus 40 IIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~ 85 (252)
T COG0052 40 IIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAE 85 (252)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHH
Confidence 334443334555566666655 346778999999998776665544
No 332
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=39.65 E-value=64 Score=27.62 Aligned_cols=37 Identities=11% Similarity=0.251 Sum_probs=30.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe--EEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT--VSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~--~~~~~g~~~ 125 (224)
+..+++++|.+-.++...++.|++.|++ +..+.||+.
T Consensus 331 ~~~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 331 DGDNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CCCcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 4458999999998899999999999986 577778863
No 333
>PRK10329 glutaredoxin-like protein; Provisional
Probab=39.64 E-value=1e+02 Score=19.77 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=36.9
Q ss_pred cEEEEe-CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 92 QAVIFC-NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 92 ~~iIf~-~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
++.+|+ ...-.|..+.+.|.+.|+....+.-...++.+..... .....+.+++.-+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~ 58 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGD 58 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECC
Confidence 356676 5677888899999999998888877766655554433 2223455565443
No 334
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=39.48 E-value=2.5e+02 Score=24.10 Aligned_cols=37 Identities=8% Similarity=-0.095 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHH
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQ 135 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~ 135 (224)
+.+.++...+..++.+..+.+--||-+.-+-.+.+..
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~ 109 (383)
T PRK09860 73 TTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIAL 109 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHH
Confidence 5566666666666666555554555555444444443
No 335
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=39.27 E-value=68 Score=30.70 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCcEEEEe-CchHHHHHHHHHHHhC---------------------------CCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 90 ITQAVIFC-NTRRKVDWLTESMLKK---------------------------EFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 90 ~~~~iIf~-~t~~~~~~l~~~L~~~---------------------------~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
..+.|||+ ++++-++.+++.+.+. ++++..++||.+.+... +... ...
T Consensus 61 ~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---~~l~-~~p 136 (844)
T TIGR02621 61 VPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---MLDP-HRP 136 (844)
T ss_pred ccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---HhcC-CCC
Confidence 34577766 8888877777655432 26688899998764332 3333 345
Q ss_pred eEEEEcC
Q psy1621 142 RVLITTD 148 (224)
Q Consensus 142 ~ilv~t~ 148 (224)
.|+|+|.
T Consensus 137 ~IIVgT~ 143 (844)
T TIGR02621 137 AVIVGTV 143 (844)
T ss_pred cEEEECH
Confidence 7999994
No 336
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=39.21 E-value=2.1e+02 Score=23.15 Aligned_cols=57 Identities=9% Similarity=0.044 Sum_probs=39.1
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
+-+|.|+ .............+.+..+..-.-+.+.++...+.+.-+.....++++.+
T Consensus 70 DvVIdfT-~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 70 DVLIDFT-TPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred CEEEECC-ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 3444455 55666666677777788877766678888877777766666677777655
No 337
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=38.38 E-value=52 Score=27.90 Aligned_cols=37 Identities=14% Similarity=0.394 Sum_probs=30.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~ 125 (224)
+..+++++|.+-..+...+..|+..|+. +..+.||+.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 3467999999988889999999998885 778899863
No 338
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=38.38 E-value=1.7e+02 Score=21.91 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=44.2
Q ss_pred cCCCCcEEEEeCchHH-HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC---CCCCCEE
Q psy1621 87 TLSITQAVIFCNTRRK-VDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID---VQQVSLV 162 (224)
Q Consensus 87 ~~~~~~~iIf~~t~~~-~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd---i~~~~~v 162 (224)
.+.+.+++|.= .-+. ...++++|.+.+..+...+... ++..+.+ + +.+|+|++.....=++ +.....+
T Consensus 41 ~l~gk~vlViG-~G~~~G~~~a~~L~~~g~~V~v~~r~~--~~l~~~l---~--~aDiVIsat~~~~ii~~~~~~~~~vi 112 (168)
T cd01080 41 DLAGKKVVVVG-RSNIVGKPLAALLLNRNATVTVCHSKT--KNLKEHT---K--QADIVIVAVGKPGLVKGDMVKPGAVV 112 (168)
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHHhhCCCEEEEEECCc--hhHHHHH---h--hCCEEEEcCCCCceecHHHccCCeEE
Confidence 33555665554 4444 5558999988888877777653 2222222 2 2345555433222232 3334678
Q ss_pred EEeCCCCChh
Q psy1621 163 INYDLPSNRE 172 (224)
Q Consensus 163 i~~~~p~s~~ 172 (224)
|+...|.+.+
T Consensus 113 IDla~prdvd 122 (168)
T cd01080 113 IDVGINRVPD 122 (168)
T ss_pred EEccCCCccc
Confidence 8999998765
No 339
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=38.28 E-value=96 Score=19.40 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=21.6
Q ss_pred cEEEEeCchHHHHHHHHHHHhCCCeE
Q psy1621 92 QAVIFCNTRRKVDWLTESMLKKEFTV 117 (224)
Q Consensus 92 ~~iIf~~t~~~~~~l~~~L~~~~~~~ 117 (224)
..+|.++|...+....+.|++.|+.+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 56788889999999999999887654
No 340
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=37.82 E-value=1.4e+02 Score=28.21 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=39.2
Q ss_pred HHHhccCCCCcEEEEeCch----HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHH
Q psy1621 82 CDLYGTLSITQAVIFCNTR----RKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMR 134 (224)
Q Consensus 82 ~~ll~~~~~~~~iIf~~t~----~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~ 134 (224)
.-++..+.+.++-|.+.+. ..++++...+...|+++..+.+++++++|..+.+
T Consensus 111 ~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~ 167 (764)
T PRK12326 111 AAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYA 167 (764)
T ss_pred HHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHc
Confidence 3444456778888888874 4455566666677999999999999999887663
No 341
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=37.76 E-value=2.7e+02 Score=24.13 Aligned_cols=67 Identities=9% Similarity=0.198 Sum_probs=48.8
Q ss_pred EecCCccHHHHHHHHhccC---------CCCcEEEEeCchHHHHHHHHHHHhCCC--eEEEecCCCCHHHHHHHHHHhhc
Q psy1621 70 YIEREDWKFDTLCDLYGTL---------SITQAVIFCNTRRKVDWLTESMLKKEF--TVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 70 ~~~~~~~k~~~l~~ll~~~---------~~~~~iIf~~t~~~~~~l~~~L~~~~~--~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
....++.|...|..++... ..+.+.|.+++-..+++..+.|.+... ++.++. ..+++.++...+..
T Consensus 164 ~~ns~~~~v~tL~~~L~g~~~p~~Il~grD~~iyVLa~~qrd~~W~~Q~L~k~~~~~~v~v~~---~~~~~~~ie~~L~~ 240 (393)
T PRK15327 164 ILNSPQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQSLARGDYDKNARVIN---ENEENKRVSTWLDT 240 (393)
T ss_pred ecCchHHHHHHHHHHhcCCCCceEEEeCCCCcEEEEEccccHhHHHHHHHhhCCCcCceEEec---hHHHHHHHHHHHHh
Confidence 3344555899999998654 246899999999999999999988654 444432 56677777777765
Q ss_pred C
Q psy1621 139 G 139 (224)
Q Consensus 139 ~ 139 (224)
+
T Consensus 241 ~ 241 (393)
T PRK15327 241 Y 241 (393)
T ss_pred c
Confidence 5
No 342
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=36.82 E-value=3e+02 Score=24.27 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=14.3
Q ss_pred hhHHHHHHhhccCCCC-cceEEEEecccc
Q psy1621 171 RENYIHRIGRGGRFGR-KGVAINFVTAED 198 (224)
Q Consensus 171 ~~~~~q~~GR~~R~g~-~~~~~~~~~~~~ 198 (224)
....+.|+|+. +.|. ++...+++..+|
T Consensus 285 l~~l~ERag~~-~~GSIT~~~tVl~~gdD 312 (433)
T PRK07594 285 LPRLLERTGMG-EKGSITAFYTVLVEGDD 312 (433)
T ss_pred hHHHHHhhcCC-CCcchheeeeeeecCCC
Confidence 34556666653 3343 455556665554
No 343
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=35.98 E-value=1.8e+02 Score=21.58 Aligned_cols=77 Identities=6% Similarity=0.083 Sum_probs=41.4
Q ss_pred CCCCcEEEEeCch---HHHHHHHHHHHhCCCeEEEecC---CCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCE
Q psy1621 88 LSITQAVIFCNTR---RKVDWLTESMLKKEFTVSAMHG---DMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSL 161 (224)
Q Consensus 88 ~~~~~~iIf~~t~---~~~~~l~~~L~~~~~~~~~~~g---~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~ 161 (224)
....+++|+|-.- -..-.++++|.+.|+.+.++.- .-..++-+..++.+++-...++--.+.......+...+.
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dl 102 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADL 102 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccE
Confidence 4567899999654 4466788899999998777332 222344445556666554544433232222111224556
Q ss_pred EEE
Q psy1621 162 VIN 164 (224)
Q Consensus 162 vi~ 164 (224)
||+
T Consensus 103 IID 105 (169)
T PF03853_consen 103 IID 105 (169)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 344
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=35.67 E-value=2.4e+02 Score=22.96 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=44.5
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
--++|=+.+.+.+....+.+.+.+.+...-+.+.+.++.+.+.+.-+. +.+++|.+
T Consensus 70 ~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~N 125 (266)
T COG0289 70 ADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPN 125 (266)
T ss_pred CCEEEECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEecc
Confidence 467888888888999999999999998888999988886655444433 88888877
No 345
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=35.63 E-value=3.1e+02 Score=24.40 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=27.8
Q ss_pred HHHHHHhccCC-CCcEEEEeCchHH-----------HHHHHHHHH-hCCCeEEEecCCCCHHHHH
Q psy1621 79 DTLCDLYGTLS-ITQAVIFCNTRRK-----------VDWLTESML-KKEFTVSAMHGDMDQNARD 130 (224)
Q Consensus 79 ~~l~~ll~~~~-~~~~iIf~~t~~~-----------~~~l~~~L~-~~~~~~~~~~g~~~~~~r~ 130 (224)
+.+.+.+.+.. -.++++|++|-.+ +..+|++++ ..|..+..+--+++.-.+.
T Consensus 198 efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A 262 (466)
T TIGR01040 198 RFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADA 262 (466)
T ss_pred HHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHH
Confidence 34444444333 4566666655333 444666666 4566666666665554333
No 346
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=34.90 E-value=3.5e+02 Score=24.53 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=49.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
++++++||.+..-++-...-...+.|--..++.++++.+ .+..++...+.+++|+.+...++...
T Consensus 64 kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf~~f~~~---al~~Ri~d~~~k~vit~d~~~~~gk~ 128 (528)
T COG0365 64 KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAE---AVADRIADLGPKVLIADDGTFRNGKE 128 (528)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecccCCCHH---HHHHHHHccCCCEEEEeccccccccc
Confidence 789999999988877666666666676667777888764 46677888899999988876665543
No 347
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=34.33 E-value=1.5e+02 Score=21.74 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=48.9
Q ss_pred HHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC
Q psy1621 80 TLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQ 157 (224)
Q Consensus 80 ~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~ 157 (224)
++..++... .+.+++|-|.+.++++.+-+.|-.....-..-|+.... .... .-.|++++.-.. =|.+
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~e--------~~~~-~qPIli~~~~~~--pn~~ 85 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAGE--------PPPA-GQPILIAWPGGN--PNSA 85 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCCC--------CCCC-CCCEEEEcCCCC--CCCC
Confidence 667777554 68899999999999999999998876666666765321 1112 234787765321 1223
Q ss_pred CCCEEEEeC
Q psy1621 158 QVSLVINYD 166 (224)
Q Consensus 158 ~~~~vi~~~ 166 (224)
.++.+|+..
T Consensus 86 ~~~~lInl~ 94 (144)
T COG2927 86 RVDLLINLA 94 (144)
T ss_pred ceeEEEecc
Confidence 344555543
No 348
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=34.30 E-value=1.4e+02 Score=23.43 Aligned_cols=65 Identities=3% Similarity=-0.027 Sum_probs=35.9
Q ss_pred HHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeE---EEecCCCCHHHHHHHHHHhhcCCce
Q psy1621 77 KFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTV---SAMHGDMDQNARDVIMRQFRSGSSR 142 (224)
Q Consensus 77 k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~---~~~~g~~~~~~r~~~~~~f~~~~~~ 142 (224)
.-+.|.+++... .++++++++. ....+.+.+.|++.|..+ ..|.............+.+.++.+.
T Consensus 103 ~~e~L~~~~~~~~~~~~~vL~~rg-~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d 172 (240)
T PRK09189 103 DGVRLAETVAAALAPTARLLYLAG-RPRAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFD 172 (240)
T ss_pred CHHHHHHHHHHhcCCCCcEEEecc-CcccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCC
Confidence 445555555432 4556665554 444588999999888754 3333322222233455666666554
No 349
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=33.72 E-value=1.6e+02 Score=28.19 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=40.7
Q ss_pred HHHHHhccCCCCcEEEEeCc----hHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHH
Q psy1621 80 TLCDLYGTLSITQAVIFCNT----RRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIM 133 (224)
Q Consensus 80 ~l~~ll~~~~~~~~iIf~~t----~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~ 133 (224)
.+.-++....+.++-|.++| +..++.+...+...|++++.+.|++++++|..+.
T Consensus 111 ~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y 168 (796)
T PRK12906 111 TLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY 168 (796)
T ss_pred HHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh
Confidence 33445555677888888877 4456667777777899999999999999987665
No 350
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=33.47 E-value=1.5e+02 Score=28.31 Aligned_cols=69 Identities=22% Similarity=0.221 Sum_probs=45.0
Q ss_pred cEEEEeCchHHHHHHHHH----HHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-cc-------cCCCCCCC
Q psy1621 92 QAVIFCNTRRKVDWLTES----MLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL-LA-------RGIDVQQV 159 (224)
Q Consensus 92 ~~iIf~~t~~~~~~l~~~----L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~-~~-------~Gvdi~~~ 159 (224)
.+|-.++-++-..++... +...|+.+.+-||++++.+|.+. ......||++|+- +. .-=.+.++
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~----~~~PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKM----LKNPPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhc----cCCCCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 455555555555555444 45569999999999999987744 4556789999982 11 11124567
Q ss_pred CEEEE
Q psy1621 160 SLVIN 164 (224)
Q Consensus 160 ~~vi~ 164 (224)
.+||.
T Consensus 151 r~VIV 155 (814)
T COG1201 151 RYVIV 155 (814)
T ss_pred cEEEe
Confidence 77774
No 351
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=33.38 E-value=3.9e+02 Score=25.68 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=55.2
Q ss_pred EEEEecCCccHHHHHHH-HhccC-CCCcEEEEeCchHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 67 FYIYIEREDWKFDTLCD-LYGTL-SITQAVIFCNTRRKVDWLTESMLKK-----EFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~-ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
.++..+....|-..+.. ++... ..++++|..+++..|..+++.+.+. |..+++..++.+. .+.
T Consensus 23 vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~----------~~~ 92 (812)
T PRK11664 23 VLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK----------VGP 92 (812)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc----------cCC
Confidence 34444444557766654 43332 3468999999999999999988542 4455555544221 122
Q ss_pred CceEEEEcC-----CcccCCCCCCCCEEEEeCCC
Q psy1621 140 SSRVLITTD-----LLARGIDVQQVSLVINYDLP 168 (224)
Q Consensus 140 ~~~ilv~t~-----~~~~Gvdi~~~~~vi~~~~p 168 (224)
..+|+++|+ .+....++.++.+||.-...
T Consensus 93 ~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaH 126 (812)
T PRK11664 93 NTRLEVVTEGILTRMIQRDPELSGVGLVILDEFH 126 (812)
T ss_pred CCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCC
Confidence 346888887 23334566777777754443
No 352
>PHA02558 uvsW UvsW helicase; Provisional
Probab=33.06 E-value=1.4e+02 Score=26.54 Aligned_cols=85 Identities=11% Similarity=0.046 Sum_probs=48.8
Q ss_pred EEEecCCccHHHHHHHHhc---cCCCCcEEEEeCchHHHHHHHHHHHhCC----CeEEEecCCCCHHHHHHHHHHhhcCC
Q psy1621 68 YIYIEREDWKFDTLCDLYG---TLSITQAVIFCNTRRKVDWLTESMLKKE----FTVSAMHGDMDQNARDVIMRQFRSGS 140 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~---~~~~~~~iIf~~t~~~~~~l~~~L~~~~----~~~~~~~g~~~~~~r~~~~~~f~~~~ 140 (224)
....+....|......+.. .....++||.++|++-++.+.+.+.+.+ ..+..+.++.... ..
T Consensus 133 il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-----------~~ 201 (501)
T PHA02558 133 LLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-----------TD 201 (501)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-----------CC
Confidence 4455555557765444332 2233489999999999999999887753 2333344443221 23
Q ss_pred ceEEEEcCC--cccC-CCCCCCCEEE
Q psy1621 141 SRVLITTDL--LARG-IDVQQVSLVI 163 (224)
Q Consensus 141 ~~ilv~t~~--~~~G-vdi~~~~~vi 163 (224)
..|+|+|.- ...+ .++.+...||
T Consensus 202 ~~I~VaT~qsl~~~~~~~~~~~~~iI 227 (501)
T PHA02558 202 APIVVSTWQSAVKQPKEWFDQFGMVI 227 (501)
T ss_pred CCEEEeeHHHHhhchhhhccccCEEE
Confidence 568888842 2222 1234556555
No 353
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=32.94 E-value=2.9e+02 Score=23.02 Aligned_cols=115 Identities=12% Similarity=0.149 Sum_probs=59.3
Q ss_pred hhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCc------hHHHHHHHHHHHhCCCe---EEEec
Q psy1621 51 RRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNT------RRKVDWLTESMLKKEFT---VSAMH 121 (224)
Q Consensus 51 ~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t------~~~~~~l~~~L~~~~~~---~~~~~ 121 (224)
..|++..+.........++..++.. -...+.+.+-+....+..++... ....+-+.+.|.+.+.. ....+
T Consensus 137 ~~P~V~i~~~~~~~~~~~V~~Dn~~-~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~ 215 (333)
T COG1609 137 GIPVVVIDRSPPGLGVPSVGIDNFA-GAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVE 215 (333)
T ss_pred CCCEEEEeCCCccCCCCEEEEChHH-HHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEe
Confidence 3454444443332333344555444 22333444433333343333322 33345555667777765 56777
Q ss_pred CCCCHHHHHHHHHHhhc-C-C-ceEEEEcC----------CcccCCCCCCCCEEEEeC
Q psy1621 122 GDMDQNARDVIMRQFRS-G-S-SRVLITTD----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 122 g~~~~~~r~~~~~~f~~-~-~-~~ilv~t~----------~~~~Gvdi~~~~~vi~~~ 166 (224)
+..+.+.-.....++.. + . ...++|++ +...|+.+|+--.|+=||
T Consensus 216 ~~~~~~~g~~~~~~ll~~~~~~ptAif~~nD~~Alg~l~~~~~~g~~vP~disviGfD 273 (333)
T COG1609 216 GDFSEESGYEAAERLLARGEPRPTAIFCANDLMALGALRALRELGLRVPEDLSVIGFD 273 (333)
T ss_pred cCCChHHHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCeeEEEEec
Confidence 77777776666666653 2 2 55555554 456688888733444444
No 354
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=32.69 E-value=2.8e+02 Score=24.63 Aligned_cols=58 Identities=16% Similarity=0.010 Sum_probs=26.5
Q ss_pred CccHHHHHHHHhccCC--CCcEEEEeCc---hHHHHHHHHHHHhCC---Ce-EEEecCCCCHHHHHH
Q psy1621 74 EDWKFDTLCDLYGTLS--ITQAVIFCNT---RRKVDWLTESMLKKE---FT-VSAMHGDMDQNARDV 131 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~~--~~~~iIf~~t---~~~~~~l~~~L~~~~---~~-~~~~~g~~~~~~r~~ 131 (224)
.-.|-..+..+..... ..-++||+-- ..++.++.+.+...+ .. +.+-.+.+++-+|..
T Consensus 154 GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 154 GVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3447777766654431 1235566643 333333333333322 12 223345666666653
No 355
>KOG1255|consensus
Probab=32.34 E-value=2.7e+02 Score=22.50 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=50.8
Q ss_pred HHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 78 FDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 78 ~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+..+.+..++...+-.+||++-.-.+..+.+.+...-.-+..++.+.++.+.-++-+.+.+.
T Consensus 84 F~sV~eA~~~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q 145 (329)
T KOG1255|consen 84 FNSVAEAKKETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQ 145 (329)
T ss_pred hhhHHHHHHhhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhc
Confidence 34455666666677899999999999999999877767788999999999999888888754
No 356
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=32.30 E-value=1.6e+02 Score=19.88 Aligned_cols=36 Identities=17% Similarity=0.501 Sum_probs=22.6
Q ss_pred CCCcEEEEeCch-----HHHHHHHHHHHhCCC---eEEEecCCC
Q psy1621 89 SITQAVIFCNTR-----RKVDWLTESMLKKEF---TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~-----~~~~~l~~~L~~~~~---~~~~~~g~~ 124 (224)
...++|++|.+. ..+..+.+.+++.|+ ++..+.||+
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~ 108 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGI 108 (113)
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChh
Confidence 345788888642 234455566666664 566778875
No 357
>KOG0341|consensus
Probab=32.02 E-value=91 Score=27.06 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=38.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHH-------hCCC---eEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESML-------KKEF---TVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~-------~~~~---~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
+.-.||.|+|++-+...+..+. +.|. +....-||++-.+...++ +.| +.|+|||+
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v---~~G-vHivVATP 310 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV---RRG-VHIVVATP 310 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH---hcC-eeEEEcCc
Confidence 4458999999998876665443 3333 456667888887766554 333 67999998
No 358
>KOG1257|consensus
Probab=31.20 E-value=1.4e+02 Score=26.99 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=68.2
Q ss_pred EEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc-CCceEEEEcC--------CcccCCCCCCCCEEE
Q psy1621 93 AVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS-GSSRVLITTD--------LLARGIDVQQVSLVI 163 (224)
Q Consensus 93 ~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~-~~~~ilv~t~--------~~~~Gvdi~~~~~vi 163 (224)
-..|.+..+....+.+..++.+..+..--++....=-+++++.+.+ .+-.++++-+ .++.-.-+.+-+.++
T Consensus 368 ~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~if 447 (582)
T KOG1257|consen 368 KKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIF 447 (582)
T ss_pred hccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEE
Confidence 3578888888888888888887777665555544444455665543 3456777632 244445566778899
Q ss_pred EeCCCCChhHHHHHHhhccCCCCcceEEEEe
Q psy1621 164 NYDLPSNRENYIHRIGRGGRFGRKGVAINFV 194 (224)
Q Consensus 164 ~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~ 194 (224)
-.+.|..+..|- |...+.|+.-.+++|.
T Consensus 448 aSGSPF~pV~~~---gK~~~pgQ~NN~yiFP 475 (582)
T KOG1257|consen 448 ASGSPFPPVEYN---GKVYVPGQGNNAYIFP 475 (582)
T ss_pred ecCCCCCCceeC---CcEecccCCceeEecc
Confidence 999999887664 8888888877777764
No 359
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=31.10 E-value=85 Score=25.51 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=30.3
Q ss_pred HHHHHHhccC---CCCcEEEEeCchH-HHHHHHHHHHhCCCe-EEEecCCCC
Q psy1621 79 DTLCDLYGTL---SITQAVIFCNTRR-KVDWLTESMLKKEFT-VSAMHGDMD 125 (224)
Q Consensus 79 ~~l~~ll~~~---~~~~~iIf~~t~~-~~~~l~~~L~~~~~~-~~~~~g~~~ 125 (224)
+.+.+++.+. +..++|+||.+.. .+..++..|...|+. +..+.|+++
T Consensus 73 ~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~ 124 (281)
T PRK11493 73 ETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLA 124 (281)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHH
Confidence 3455555543 4678999998643 345566667777764 777887763
No 360
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=30.89 E-value=76 Score=27.08 Aligned_cols=36 Identities=11% Similarity=0.329 Sum_probs=28.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..+++++|.+-..+...+..|...|+ ++..+.|++
T Consensus 56 ~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 92 (376)
T PRK08762 56 RDREIVLICASGTRSAHAAATLRELGYTRVASVAGGF 92 (376)
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcH
Confidence 456899999987777888889988887 577777765
No 361
>PRK06936 type III secretion system ATPase; Provisional
Probab=30.66 E-value=3.8e+02 Score=23.67 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=37.6
Q ss_pred CCccHHHHHHHHhccCCCCcEEEEeCchHHHHH----HHHHHHhCCC--e-EEEecCCCCHHHHH-------HHHHHhhc
Q psy1621 73 REDWKFDTLCDLYGTLSITQAVIFCNTRRKVDW----LTESMLKKEF--T-VSAMHGDMDQNARD-------VIMRQFRS 138 (224)
Q Consensus 73 ~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~----l~~~L~~~~~--~-~~~~~g~~~~~~r~-------~~~~~f~~ 138 (224)
....|...+..+...... .++||+---+...+ +.+.+...+. . +..-.+..++-+|. .+-+-|+.
T Consensus 171 sG~GKStLl~~Ia~~~~~-dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd 249 (439)
T PRK06936 171 AGGGKSTLLASLIRSAEV-DVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRD 249 (439)
T ss_pred CCCChHHHHHHHhcCCCC-CEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344587777666665443 45677743333233 3333433322 2 33334566666665 35556654
Q ss_pred CCceEEEEcC
Q psy1621 139 GSSRVLITTD 148 (224)
Q Consensus 139 ~~~~ilv~t~ 148 (224)
...+||+--|
T Consensus 250 ~G~~Vll~~D 259 (439)
T PRK06936 250 QGKRVLLLMD 259 (439)
T ss_pred cCCCEEEecc
Confidence 4445555544
No 362
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=30.58 E-value=97 Score=25.81 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=32.1
Q ss_pred HHHHHHhccC---CCCcEEEEeCch-HHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 79 DTLCDLYGTL---SITQAVIFCNTR-RKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 79 ~~l~~ll~~~---~~~~~iIf~~t~-~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+.+.+++.+. +..++||||.+- ..+..++..|+..|+ ++..+.||+.
T Consensus 89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~ 140 (320)
T PLN02723 89 EAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLP 140 (320)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHH
Confidence 4555566554 456899998654 234566667888887 5889999864
No 363
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=30.24 E-value=80 Score=21.72 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHhCCCeEEEe--cCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAM--HGDMDQNARDVIMRQFRSGSSRVLITTDLL 150 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~--~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~ 150 (224)
|..++ ++|.+.|+.+..+ ..+.+......+.+.++++++.++|.++.-
T Consensus 32 T~gTa----~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~~ 81 (116)
T cd01423 32 TEGTA----DFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSN 81 (116)
T ss_pred ccHHH----HHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCCC
Confidence 55554 4455566655544 222111112567888899999999988653
No 364
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=30.12 E-value=92 Score=21.61 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHHHh-CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 98 NTRRKVDWLTESMLK-KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 98 ~t~~~~~~l~~~L~~-~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
.|..+++ +|.+ .|+.+..+..+ +.+.+..+.+.+++|++..+|.|+.
T Consensus 32 AT~gTa~----~L~~~~Gi~v~~vk~~-~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 32 ATGTTGL----LIQEATGLTVNRMKSG-PLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred EechHHH----HHHHhhCCcEEEEecC-CCCchhHHHHHHHcCceeEEEEcCC
Confidence 4555554 4555 67776655211 1123466899999999998888764
No 365
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=30.05 E-value=3.1e+02 Score=22.47 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=37.5
Q ss_pred ccHHHHHHHHh-ccCCCCcEEEEe---CchHHHHHHHHHHHhCCC---eE-EEecCCCCHHHH-------HHHHHHhhcC
Q psy1621 75 DWKFDTLCDLY-GTLSITQAVIFC---NTRRKVDWLTESMLKKEF---TV-SAMHGDMDQNAR-------DVIMRQFRSG 139 (224)
Q Consensus 75 ~~k~~~l~~ll-~~~~~~~~iIf~---~t~~~~~~l~~~L~~~~~---~~-~~~~g~~~~~~r-------~~~~~~f~~~ 139 (224)
..|..++.+.+ +....+..+||+ ...+++.++.+.+...+. .+ ..-.+..++.+| ..+-+.|+..
T Consensus 80 ~GKt~L~l~~i~~~~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~ 159 (274)
T cd01132 80 TGKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDN 159 (274)
T ss_pred CCccHHHHHHHHHhcCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHC
Confidence 34666633433 333344455777 345566666666665542 23 333355556665 3455566643
Q ss_pred -CceEEEEcC
Q psy1621 140 -SSRVLITTD 148 (224)
Q Consensus 140 -~~~ilv~t~ 148 (224)
+.-+++..+
T Consensus 160 G~~Vlvl~Ds 169 (274)
T cd01132 160 GKHALIIYDD 169 (274)
T ss_pred CCCEEEEEcC
Confidence 433444444
No 366
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=30.03 E-value=1.7e+02 Score=19.42 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=38.3
Q ss_pred cEEEEeCc----hHH-HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC-CCCCCC
Q psy1621 92 QAVIFCNT----RRK-VDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI-DVQQVS 160 (224)
Q Consensus 92 ~~iIf~~t----~~~-~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv-di~~~~ 160 (224)
++|+.|.+ -.. +..+.+.|.++|+.+.+.|...+.- +... ...+++++|..+...+ ++|.+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~------~~~~-~~~D~iv~t~~~~~~~~~ip~~~ 71 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI------ETYM-DGVHLICTTARVDRSFGDIPLVH 71 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHH------hhhc-CCCCEEEECCccccccCCCCEEE
Confidence 57777864 222 4666778888899988888664431 1111 3457888887665555 355443
No 367
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=29.92 E-value=3.7e+02 Score=23.29 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHhh--cCCceEEEEcCCcccCCC-CCCCCEEEEeCCCCChhHHHHHHhhccCCC
Q psy1621 123 DMDQNARDVIMRQFR--SGSSRVLITTDLLARGID-VQQVSLVINYDLPSNRENYIHRIGRGGRFG 185 (224)
Q Consensus 123 ~~~~~~r~~~~~~f~--~~~~~ilv~t~~~~~Gvd-i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g 185 (224)
+.+.++-.+.++.-+ .++..++++..+-+.|+. .-.-+.-.|...+.+...+.+.....|...
T Consensus 289 GhD~~~i~~A~~~a~~~~~kPt~Iia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~~lg~~~ 354 (386)
T cd02017 289 GHDPRKVYAAYKKAVEHKGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDRFGIPV 354 (386)
T ss_pred CCCHHHHHHHHHHHHhCCCCCeEEEEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHHHcCCCC
Confidence 444444444444443 467889999999999986 223233333345667777777665555443
No 368
>PHA02653 RNA helicase NPH-II; Provisional
Probab=29.84 E-value=4.7e+02 Score=24.53 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=44.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC-------CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEE
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK-------EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLV 162 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~v 162 (224)
..+++|-+++++-+..++..+.+. +..+...+|+.+...... .. ....++++|..+.. .++.++.+|
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t---~~--k~~~Ilv~T~~L~l-~~L~~v~~V 295 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINT---NP--KPYGLVFSTHKLTL-NKLFDYGTV 295 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhc---cc--CCCCEEEEeCcccc-cccccCCEE
Confidence 458999999998888888877542 345678899987321111 11 13478999853211 245667777
Q ss_pred EEeC
Q psy1621 163 INYD 166 (224)
Q Consensus 163 i~~~ 166 (224)
|.-.
T Consensus 296 VIDE 299 (675)
T PHA02653 296 IIDE 299 (675)
T ss_pred Eccc
Confidence 7433
No 369
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=29.71 E-value=1.1e+02 Score=20.39 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=29.9
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhhcC----CceEEEEcCCcccCCCCC
Q psy1621 114 EFTVSAMHGDMDQNARDVIMRQFRSG----SSRVLITTDLLARGIDVQ 157 (224)
Q Consensus 114 ~~~~~~~~g~~~~~~r~~~~~~f~~~----~~~ilv~t~~~~~Gvdi~ 157 (224)
.+...+|-|+++...|+.+.+...+. ..-+++=++.-+.|+++-
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~ 70 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFF 70 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEE
Confidence 44566788899999999988876543 123444444457787764
No 370
>KOG0353|consensus
Probab=29.55 E-value=2.5e+02 Score=24.37 Aligned_cols=60 Identities=7% Similarity=0.097 Sum_probs=46.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS--GSSRVLITTD 148 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~--~~~~ilv~t~ 148 (224)
..+-+||.|+-..-++.---.|++.|+....+++..+.++-+.+.....+ ++.+.+-.|+
T Consensus 133 adg~alvi~plislmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtp 194 (695)
T KOG0353|consen 133 ADGFALVICPLISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTP 194 (695)
T ss_pred cCCceEeechhHHHHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecH
Confidence 45788999999998888777888999999999999998888877777653 3445555554
No 371
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=29.32 E-value=4e+02 Score=23.54 Aligned_cols=76 Identities=18% Similarity=0.117 Sum_probs=36.5
Q ss_pred cCCccHHHHHHHHhccCCCCcEEEEeC---chHHHHHH-HHHHHhCCC--eE-EEecCCCCHHHHH-------HHHHHhh
Q psy1621 72 EREDWKFDTLCDLYGTLSITQAVIFCN---TRRKVDWL-TESMLKKEF--TV-SAMHGDMDQNARD-------VIMRQFR 137 (224)
Q Consensus 72 ~~~~~k~~~l~~ll~~~~~~~~iIf~~---t~~~~~~l-~~~L~~~~~--~~-~~~~g~~~~~~r~-------~~~~~f~ 137 (224)
.....|...+..+...... .++||+- ...++..+ .+.|.+.+. .+ .+-.+..++-+|. .+-+-|+
T Consensus 166 ~sG~GKTtLL~~I~~~~~~-d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEyfr 244 (442)
T PRK08927 166 GSGVGKSVLLSMLARNADA-DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFR 244 (442)
T ss_pred CCCCCHHHHHHHHHhccCC-CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344588877666655443 3455553 33334333 344444333 22 2233455566655 3555665
Q ss_pred cCCceEEEEcC
Q psy1621 138 SGSSRVLITTD 148 (224)
Q Consensus 138 ~~~~~ilv~t~ 148 (224)
....+||+--|
T Consensus 245 d~G~~Vll~~D 255 (442)
T PRK08927 245 DQGKDVLCLMD 255 (442)
T ss_pred HCCCcEEEEEe
Confidence 43345544433
No 372
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=28.96 E-value=80 Score=27.18 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=30.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+..+++++|.+-..+...+..|.+.|+ ++..+.||+.
T Consensus 342 ~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~ 379 (392)
T PRK07878 342 QDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVV 379 (392)
T ss_pred CCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHH
Confidence 456899999998888889999999988 4778889863
No 373
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=28.88 E-value=3.1e+02 Score=22.16 Aligned_cols=55 Identities=13% Similarity=0.281 Sum_probs=37.6
Q ss_pred cEEEEe-CchHHHHHHHHHHHhCC--CeEEEec-CCCCHHHHHHHHHHhhcCCceEEEE
Q psy1621 92 QAVIFC-NTRRKVDWLTESMLKKE--FTVSAMH-GDMDQNARDVIMRQFRSGSSRVLIT 146 (224)
Q Consensus 92 ~~iIf~-~t~~~~~~l~~~L~~~~--~~~~~~~-g~~~~~~r~~~~~~f~~~~~~ilv~ 146 (224)
..|-|. .+..-++..+..|++.. ..+...| |-.++.+.+.++++.+..+.+||+.
T Consensus 109 ~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~V 167 (253)
T COG1922 109 KRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLV 167 (253)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEEE
Confidence 444444 45555677777777763 4555555 8788887789999999887776554
No 374
>KOG0384|consensus
Probab=28.87 E-value=1.8e+02 Score=29.15 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=45.6
Q ss_pred HHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHh-CCCeEEEecCCCCHHHHHHHHHHhhcC-----CceEEEEcCC
Q psy1621 77 KFDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLK-KEFTVSAMHGDMDQNARDVIMRQFRSG-----SSRVLITTDL 149 (224)
Q Consensus 77 k~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~-~~~~~~~~~g~~~~~~r~~~~~~f~~~-----~~~ilv~t~~ 149 (224)
....|..+.... -.+|.||.++-.-. ..+...+.. ...++.+|||.....+-..-.+.+.++ ++++|++|-.
T Consensus 406 ti~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye 484 (1373)
T KOG0384|consen 406 TITFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYE 484 (1373)
T ss_pred HHHHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhH
Confidence 455566665544 45777777764332 222222222 277999999998777766667776666 5678998864
No 375
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=28.45 E-value=1.1e+02 Score=21.71 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=28.5
Q ss_pred HHHHHHhhcCCceEEEEcCCcccCCCCCC------CCEEEEeC
Q psy1621 130 DVIMRQFRSGSSRVLITTDLLARGIDVQQ------VSLVINYD 166 (224)
Q Consensus 130 ~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~------~~~vi~~~ 166 (224)
.++++...+|++.+.|.|.----++|+.. -++||+||
T Consensus 64 ~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD 106 (144)
T PF10657_consen 64 PEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFD 106 (144)
T ss_pred HHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEecc
Confidence 46788889999998888877666777742 35788887
No 376
>KOG2638|consensus
Probab=27.89 E-value=21 Score=30.87 Aligned_cols=18 Identities=44% Similarity=0.700 Sum_probs=15.1
Q ss_pred eeecCCCCccccccccCc
Q psy1621 6 MVCYPPGHGACADVHVNV 23 (224)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (224)
-.|||||||...+.+-++
T Consensus 210 d~WYPPGHGd~f~sl~nS 227 (498)
T KOG2638|consen 210 EAWYPPGHGDLFDSLHNS 227 (498)
T ss_pred ccccCCCCccHHHHHhcc
Confidence 469999999998888654
No 377
>PRK07411 hypothetical protein; Validated
Probab=27.73 E-value=88 Score=26.94 Aligned_cols=37 Identities=5% Similarity=0.110 Sum_probs=31.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
+..++++||.+-..+...+..|++.|+....+.||+.
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~~~l~GG~~ 377 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGIT 377 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCeEEecchHH
Confidence 4568999999999999999999999988777888753
No 378
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=27.57 E-value=1.8e+02 Score=23.71 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=41.8
Q ss_pred ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHh
Q psy1621 75 DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 75 ~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
+-|...|.+.+....-.-.+.-||--++-+.++..|.+.|+.+...+|....+....+.+.+
T Consensus 53 e~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~get~eey~~~i~~~L 114 (268)
T PF05221_consen 53 EAKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVFAWKGETDEEYWWCIEKAL 114 (268)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEEE-TT--HHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceEEEeCCCCHHHHHHHHHHHh
Confidence 34889999988886544444555656778899999999999999889887666655555544
No 379
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=27.45 E-value=1.9e+02 Score=22.95 Aligned_cols=58 Identities=9% Similarity=0.153 Sum_probs=36.2
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCeEE---EecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKKEFTVS---AMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~~~~~~---~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
++.|++......-+.+.+.|++.|..+. .|...........+.+.+..+.+.+++-|+
T Consensus 130 ~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS 190 (255)
T PRK05752 130 DPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSS 190 (255)
T ss_pred CCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECC
Confidence 4445556666677789999999887643 343333333345566777777776555554
No 380
>KOG0336|consensus
Probab=27.41 E-value=3.3e+02 Score=24.06 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=45.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC---CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC------cccCCCCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK---EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL------LARGIDVQQV 159 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~------~~~Gvdi~~~ 159 (224)
.+..+||+.+|++-+..+.....+. +....+++|+-...+ .+++++.| ..|++||+- ..--+|+..+
T Consensus 293 ~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e---qie~lkrg-veiiiatPgrlndL~~~n~i~l~si 368 (629)
T KOG0336|consen 293 NGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE---QIEDLKRG-VEIIIATPGRLNDLQMDNVINLASI 368 (629)
T ss_pred CCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh---HHHHHhcC-ceEEeeCCchHhhhhhcCeeeeeee
Confidence 3557999999998877666555443 566667777655544 34455444 678889872 2223566666
Q ss_pred CEEE
Q psy1621 160 SLVI 163 (224)
Q Consensus 160 ~~vi 163 (224)
++++
T Consensus 369 TYlV 372 (629)
T KOG0336|consen 369 TYLV 372 (629)
T ss_pred EEEE
Confidence 6665
No 381
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=27.32 E-value=4.6e+02 Score=23.59 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=17.6
Q ss_pred cHHHHHHHHhccCCCCcEE-EEeC---chHHHHHHHHHHHhC
Q psy1621 76 WKFDTLCDLYGTLSITQAV-IFCN---TRRKVDWLTESMLKK 113 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~i-If~~---t~~~~~~l~~~L~~~ 113 (224)
.|.......+.+.....++ ||+. ...++..+.+.+.+.
T Consensus 174 GKt~lal~~i~~~~~~dv~~V~~~IGer~~ev~e~~~~~~~~ 215 (502)
T PRK09281 174 GKTAIAIDTIINQKGKDVICIYVAIGQKASTVAQVVRKLEEH 215 (502)
T ss_pred CchHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhc
Confidence 3666533333322223343 6663 444455555555544
No 382
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=27.29 E-value=3.4e+02 Score=22.02 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCeE---EEecCCCCHHHHHHHHHHhhcCCceEEEEcC----------CcccCCCCCCCCEEEEeC
Q psy1621 104 DWLTESMLKKEFTV---SAMHGDMDQNARDVIMRQFRSGSSRVLITTD----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 104 ~~l~~~L~~~~~~~---~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~----------~~~~Gvdi~~~~~vi~~~ 166 (224)
+-+.+.|.+.++.+ ....+..+.+.-.+..+++.......++|++ +-..|+.+|+--.|+-||
T Consensus 197 ~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~ai~~~~d~~A~g~~~al~~~g~~vP~dvsvvgfd 272 (329)
T TIGR01481 197 EGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGSLPTAVFVASDEMAAGILNAAMDAGIKVPEDLEVITSN 272 (329)
T ss_pred HHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeeC
Confidence 33445566666532 2334555555445555665444445566654 234688888754555555
No 383
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=27.10 E-value=4.3e+02 Score=23.14 Aligned_cols=77 Identities=22% Similarity=0.154 Sum_probs=33.7
Q ss_pred cCCccHHHHHHHHhccCCCCcEEEEeC--chHHHHHHHH-HHHhCCC--eE-EEecCCCCHHHHH-------HHHHHhhc
Q psy1621 72 EREDWKFDTLCDLYGTLSITQAVIFCN--TRRKVDWLTE-SMLKKEF--TV-SAMHGDMDQNARD-------VIMRQFRS 138 (224)
Q Consensus 72 ~~~~~k~~~l~~ll~~~~~~~~iIf~~--t~~~~~~l~~-~L~~~~~--~~-~~~~g~~~~~~r~-------~~~~~f~~ 138 (224)
.+...|...+..+.........+|.+. ...++..+.+ .+.+.+. .+ ..-.+..++-+|. .+.+-|+.
T Consensus 148 ~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyfrd 227 (418)
T TIGR03498 148 GSGVGKSTLLSMLARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRD 227 (418)
T ss_pred CCCCChHHHHHHHhCCCCCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344447777655554444444333332 2333333333 3433322 22 2233445555554 34555654
Q ss_pred CCceEEEEcC
Q psy1621 139 GSSRVLITTD 148 (224)
Q Consensus 139 ~~~~ilv~t~ 148 (224)
...+||+--|
T Consensus 228 ~G~~Vll~~D 237 (418)
T TIGR03498 228 QGKDVLLLMD 237 (418)
T ss_pred cCCCEEEecc
Confidence 4445555443
No 384
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=27.08 E-value=2.4e+02 Score=24.30 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=45.2
Q ss_pred CCCCcEEEE---eCchHHHHHHHHHHHhCCC---eEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q psy1621 88 LSITQAVIF---CNTRRKVDWLTESMLKKEF---TVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLL 150 (224)
Q Consensus 88 ~~~~~~iIf---~~t~~~~~~l~~~L~~~~~---~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~ 150 (224)
..+..+||+ +.|-.+....++.|++.|. .+...||-++ .-.+++.+.|.+|.+.=+++|+..
T Consensus 262 V~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 262 VEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred cCCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 344455554 3567777788888888764 5677899888 666777778888888888888875
No 385
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=26.74 E-value=2.4e+02 Score=22.91 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=34.6
Q ss_pred eEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHH----HHHHHHHHHhCCCeE
Q psy1621 65 RQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRK----VDWLTESMLKKEFTV 117 (224)
Q Consensus 65 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~----~~~l~~~L~~~~~~~ 117 (224)
..++...+....-..++.+++......++.|+...... +..+.+.+.+.+..+
T Consensus 96 ~~~~r~~p~~~~~~~a~~~~l~~~~w~~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (348)
T PF01094_consen 96 PTFFRTVPSDSSQARALVDLLKHFGWTRVSVVYSDDDYGNSLADSFQDLLRERGGIC 152 (348)
T ss_dssp TTEEESSB-HHHHHHHHHHHHHHTTSSEEEEEEESSHHHHHHHHHHHHHHHHHTTCE
T ss_pred cccccccccHHHHHHHHHHhhhcCCCceeeeeccccccccccchhhhhhhcccccce
Confidence 33555555555467788888888877776666665555 677777777755443
No 386
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.33 E-value=4.5e+02 Score=23.13 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 103 VDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 103 ~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
|..++++++..|.++..+-=+++.-.+.+-.=.+..|+.
T Consensus 241 At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEp 279 (441)
T COG1157 241 ATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEP 279 (441)
T ss_pred HHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHhcCCC
Confidence 455666666666666666555555444444444444433
No 387
>KOG0333|consensus
Probab=26.19 E-value=1.8e+02 Score=26.43 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=40.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFR-SGSSRVLITTD 148 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~-~~~~~ilv~t~ 148 (224)
.+...+|..+|+.-++.+.+.-.+ .++.+..+-|+.+.++.- |+ +-...|+|+|+
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~-----fqls~gceiviatP 380 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG-----FQLSMGCEIVIATP 380 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh-----hhhhccceeeecCc
Confidence 456789999999988887775433 378899999999988743 32 22356889988
No 388
>COG1478 GTP and metal dependent enzyme involved F420 coenzyme biosynthesis (catalyzes addition of two l-glutamates to F420 precursor) [Coenzyme transport and metabolism]
Probab=26.01 E-value=1.3e+02 Score=24.14 Aligned_cols=59 Identities=27% Similarity=0.287 Sum_probs=36.1
Q ss_pred cCCceEEEEcC----CcccCCCCCCCCEEEEeCCCCChhH--------HHHHH------------hhccCCCCcceEEEE
Q psy1621 138 SGSSRVLITTD----LLARGIDVQQVSLVINYDLPSNREN--------YIHRI------------GRGGRFGRKGVAINF 193 (224)
Q Consensus 138 ~~~~~ilv~t~----~~~~Gvdi~~~~~vi~~~~p~s~~~--------~~q~~------------GR~~R~g~~~~~~~~ 193 (224)
.++.-+++.|. ....|||=.++...+-.-+|.++.. ..++. ||..|.|+.|.++-.
T Consensus 90 ~~~~~i~~~~k~G~v~~nAGIDeSNv~~g~l~llP~dPd~Sa~~i~~~L~~~~g~~vgVIItDt~grp~R~G~~gvAiG~ 169 (257)
T COG1478 90 VKPNFILTETKLGIVCANAGIDESNVDEGFLLLLPKDPDASAETIRERLRELLGVKVGVIITDTHGRPFRRGQTGVAIGI 169 (257)
T ss_pred cCCceEEEEeccceeecccCcccccCCCceEeeCCCChHHHHHHHHHHHHHHhCCceEEEEeCCCCCccccCcceEEEee
Confidence 34444555554 4678899888776555445655433 22222 688888888887766
Q ss_pred ecc
Q psy1621 194 VTA 196 (224)
Q Consensus 194 ~~~ 196 (224)
.--
T Consensus 170 ~G~ 172 (257)
T COG1478 170 SGL 172 (257)
T ss_pred ccC
Confidence 533
No 389
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=25.71 E-value=6.1e+02 Score=24.46 Aligned_cols=91 Identities=10% Similarity=-0.027 Sum_probs=54.7
Q ss_pred EEEecCCccHHHHHHHHh-ccC-CCCcEEEEeCchHHHHHHHHHHHh-C----CCeEEEecCCCCHHHHHHHHHHhhcCC
Q psy1621 68 YIYIEREDWKFDTLCDLY-GTL-SITQAVIFCNTRRKVDWLTESMLK-K----EFTVSAMHGDMDQNARDVIMRQFRSGS 140 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll-~~~-~~~~~iIf~~t~~~~~~l~~~L~~-~----~~~~~~~~g~~~~~~r~~~~~~f~~~~ 140 (224)
++.-+....|-..+...+ ... .+.+++|..+++..|..+++.+.+ . |..+++..+..+ ..+.+
T Consensus 21 Ii~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~----------~~s~~ 90 (819)
T TIGR01970 21 VLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN----------KVSRR 90 (819)
T ss_pred EEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc----------ccCCC
Confidence 344444455776665543 322 356899999999999999998853 2 334444333211 11234
Q ss_pred ceEEEEcCC-----cccCCCCCCCCEEEEeCCC
Q psy1621 141 SRVLITTDL-----LARGIDVQQVSLVINYDLP 168 (224)
Q Consensus 141 ~~ilv~t~~-----~~~Gvdi~~~~~vi~~~~p 168 (224)
.+|+++|+- +....++.++.+||.-...
T Consensus 91 t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaH 123 (819)
T TIGR01970 91 TRLEVVTEGILTRMIQDDPELDGVGALIFDEFH 123 (819)
T ss_pred CcEEEECCcHHHHHHhhCcccccCCEEEEeccc
Confidence 578888872 3334567788888865544
No 390
>PRK05922 type III secretion system ATPase; Validated
Probab=25.50 E-value=4.7e+02 Score=23.06 Aligned_cols=20 Identities=20% Similarity=-0.011 Sum_probs=11.0
Q ss_pred cCCccHHHHHHHHhccCCCC
Q psy1621 72 EREDWKFDTLCDLYGTLSIT 91 (224)
Q Consensus 72 ~~~~~k~~~l~~ll~~~~~~ 91 (224)
.+...|...+..+....+..
T Consensus 165 ~nG~GKSTLL~~Ia~~~~~d 184 (434)
T PRK05922 165 EPGSGKSSLLSTIAKGSKST 184 (434)
T ss_pred CCCCChHHHHHHHhccCCCC
Confidence 33445777766666554433
No 391
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=25.34 E-value=3.6e+02 Score=21.66 Aligned_cols=51 Identities=12% Similarity=0.247 Sum_probs=35.5
Q ss_pred EEEecCCccHHHHHHHHhccCC-CCcEEEEe-CchHHHHHHHHHHHhCCCeEEE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLS-ITQAVIFC-NTRRKVDWLTESMLKKEFTVSA 119 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~-~~~~iIf~-~t~~~~~~l~~~L~~~~~~~~~ 119 (224)
+.++.+.+ |-..|..++...+ ..+.|||+ .+.+....+.+.|.+.++...-
T Consensus 155 Ilft~~~~-KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G 207 (252)
T PF11019_consen 155 ILFTGGQD-KGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIG 207 (252)
T ss_pred eEEeCCCc-cHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEE
Confidence 44555554 8899999888764 22355555 5778899999999888775433
No 392
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=25.27 E-value=1.7e+02 Score=19.33 Aligned_cols=43 Identities=16% Similarity=0.364 Sum_probs=30.3
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCcccCCCCC
Q psy1621 114 EFTVSAMHGDMDQNARDVIMRQFRS----GSSRVLITTDLLARGIDVQ 157 (224)
Q Consensus 114 ~~~~~~~~g~~~~~~r~~~~~~f~~----~~~~ilv~t~~~~~Gvdi~ 157 (224)
.+...++-|.++...|+.+.+...+ |..-++.+++. +.|+++.
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~ 69 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFR 69 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEE
Confidence 3456677889999999999988764 33334444444 8888873
No 393
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=25.10 E-value=3.8e+02 Score=21.82 Aligned_cols=66 Identities=12% Similarity=0.055 Sum_probs=42.1
Q ss_pred EEEecCCccHHHH--HHHHhccCCCCcEEEEeCch----HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHH
Q psy1621 68 YIYIEREDWKFDT--LCDLYGTLSITQAVIFCNTR----RKVDWLTESMLKKEFTVSAMHGDMDQNARDVIM 133 (224)
Q Consensus 68 ~~~~~~~~~k~~~--l~~ll~~~~~~~~iIf~~t~----~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~ 133 (224)
+..+...+.|--. +.-.+..+.+.++=|.+.+. ..++++...+...|+.+..++++++.++|.+..
T Consensus 94 laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y 165 (266)
T PF07517_consen 94 LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAY 165 (266)
T ss_dssp EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHH
T ss_pred eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHH
Confidence 3344444446543 33455566788888888764 445566666677899999999999988877554
No 394
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=25.07 E-value=3.7e+02 Score=21.65 Aligned_cols=108 Identities=11% Similarity=0.161 Sum_probs=54.7
Q ss_pred hhhhhhccCcccce-eEEEEEecCCccHHHHHHHHhccCCCCc-EEEEeCc------hHHHHHHHHHHHhCCC---eEEE
Q psy1621 51 RRRVLIVGDSMTRI-RQFYIYIEREDWKFDTLCDLYGTLSITQ-AVIFCNT------RRKVDWLTESMLKKEF---TVSA 119 (224)
Q Consensus 51 ~~~~~i~~~~~~~i-~~~~~~~~~~~~k~~~l~~ll~~~~~~~-~iIf~~t------~~~~~~l~~~L~~~~~---~~~~ 119 (224)
..|++..+...... ....+.+++.. -...+.+.+.+....+ +.++... ....+-+.+.|.+.|+ ....
T Consensus 79 ~iPvV~~~~~~~~~~~~~~V~~D~~~-a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i 157 (279)
T PF00532_consen 79 GIPVVLIDRYIDNPEGVPSVYIDNYE-AGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWI 157 (279)
T ss_dssp TSEEEEESS-SCTTCTSCEEEEEHHH-HHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCEEEEEeccCCcccCCEEEEcchH-HHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccc
Confidence 45666655553333 22233444333 2223333333333344 3333321 2333345566777877 3455
Q ss_pred ecCCCCHHHHHHHHHHh-hcC-CceEEEEcC----------CcccC-CCCCCC
Q psy1621 120 MHGDMDQNARDVIMRQF-RSG-SSRVLITTD----------LLARG-IDVQQV 159 (224)
Q Consensus 120 ~~g~~~~~~r~~~~~~f-~~~-~~~ilv~t~----------~~~~G-vdi~~~ 159 (224)
.++..+.+.-.+..+++ +++ ++.-++|++ +-..| +.+|+-
T Consensus 158 ~~~~~~~~~g~~~~~~ll~~~p~idai~~~nd~~A~ga~~~l~~~gr~~ip~d 210 (279)
T PF00532_consen 158 FEGDFDYESGYEAARELLESHPDIDAIFCANDMMAIGAIRALRERGRLKIPED 210 (279)
T ss_dssp EESSSSHHHHHHHHHHHHHTSTT-SEEEESSHHHHHHHHHHHHHTT-TCTTTE
T ss_pred cccCCCHHHHHHHHHHHHhhCCCCEEEEEeCHHHHHHHHHHHHHcCCcccChh
Confidence 67777777666666665 444 445777776 34456 777753
No 395
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=25.05 E-value=1.2e+02 Score=22.85 Aligned_cols=31 Identities=6% Similarity=0.220 Sum_probs=19.0
Q ss_pred CCcEEEEeCc--hHHHHHHHHHHHhCCCeEEEe
Q psy1621 90 ITQAVIFCNT--RRKVDWLTESMLKKEFTVSAM 120 (224)
Q Consensus 90 ~~~~iIf~~t--~~~~~~l~~~L~~~~~~~~~~ 120 (224)
-+++++|++. .+.+..+++.|...++.+..+
T Consensus 82 ~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~V 114 (172)
T PF10740_consen 82 TDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGV 114 (172)
T ss_dssp T-EEEEEES-S--HHHHHHHHHHHHHT--EEEE
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEE
Confidence 5799999975 445777888887777665433
No 396
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=24.89 E-value=1.5e+02 Score=22.40 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=35.9
Q ss_pred eEEEEEecCCccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCC
Q psy1621 65 RQFYIYIEREDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEF 115 (224)
Q Consensus 65 ~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~ 115 (224)
.|...+..+++.-++.+...+++- .+.+++++++.....+.+.+.|++.++
T Consensus 20 ~H~c~~Y~~~~e~~~~~~~Fi~~GL~~ge~~l~v~~~~~~~~~l~~~L~~~~~ 72 (191)
T PF14417_consen 20 DHICAFYDDEEELLEVLVPFIREGLARGERCLYVAPDPRRVEELRDELRKAGP 72 (191)
T ss_pred ceEEEEECCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHhcCC
Confidence 455556666666778887777653 678888888757777888888866543
No 397
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.86 E-value=2.4e+02 Score=19.45 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=24.1
Q ss_pred EEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceE
Q psy1621 93 AVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRV 143 (224)
Q Consensus 93 ~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~i 143 (224)
.++++-..+.+..+.+.+.+.|.+...++++. ...++++..++..+++
T Consensus 58 lavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~---~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 58 LAVVCVPPDKVPEIVDEAAALGVKAVWLQPGA---ESEELIEAAREAGIRV 105 (116)
T ss_dssp EEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS-----HHHHHHHHHTT-EE
T ss_pred EEEEEcCHHHHHHHHHHHHHcCCCEEEEEcch---HHHHHHHHHHHcCCEE
Confidence 34444445555556666667788888888873 3344445555555553
No 398
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=24.85 E-value=5e+02 Score=23.09 Aligned_cols=76 Identities=14% Similarity=0.074 Sum_probs=36.2
Q ss_pred CCccHHHHHHHHhccCC-----CCcEEEEeCc---hHHHHHHHHHHHhCC---CeEEE-ecCCCCHHHHH-------HHH
Q psy1621 73 REDWKFDTLCDLYGTLS-----ITQAVIFCNT---RRKVDWLTESMLKKE---FTVSA-MHGDMDQNARD-------VIM 133 (224)
Q Consensus 73 ~~~~k~~~l~~ll~~~~-----~~~~iIf~~t---~~~~~~l~~~L~~~~---~~~~~-~~g~~~~~~r~-------~~~ 133 (224)
..-.|...+..+.+... .+-++||+-- ..++.++.+.+.+.+ ..+.+ -.+.+++-.|. .+-
T Consensus 152 ~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiA 231 (460)
T PRK04196 152 SGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAA 231 (460)
T ss_pred CCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 33447777776655432 1226677743 333444444444332 22333 33456666555 455
Q ss_pred HHhh--cCCceEEEEcC
Q psy1621 134 RQFR--SGSSRVLITTD 148 (224)
Q Consensus 134 ~~f~--~~~~~ilv~t~ 148 (224)
+-|+ +|+.-+|+..+
T Consensus 232 Eyfr~d~G~~VLli~Ds 248 (460)
T PRK04196 232 EYLAFEKGMHVLVILTD 248 (460)
T ss_pred HHHHHhcCCcEEEEEcC
Confidence 6676 34433444433
No 399
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=24.81 E-value=1.4e+02 Score=27.55 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=34.1
Q ss_pred HHHHHHhccC---CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCC
Q psy1621 79 DTLCDLYGTL---SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDM 124 (224)
Q Consensus 79 ~~l~~ll~~~---~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~ 124 (224)
+.+.+++... +..++|+||.+--.+...+-.|+..|+. +..|.|++
T Consensus 209 ~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw 258 (610)
T PRK09629 209 QDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSW 258 (610)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCH
Confidence 3455555543 4678999999877777777778888874 88888984
No 400
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=24.59 E-value=4e+02 Score=21.92 Aligned_cols=25 Identities=12% Similarity=0.152 Sum_probs=16.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKE 114 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~ 114 (224)
..++.|+-.|.+.++.+++.+.+.+
T Consensus 150 ~~~i~V~NRt~~ra~~La~~~~~~~ 174 (283)
T COG0169 150 AKRITVVNRTRERAEELADLFGELG 174 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhhhcc
Confidence 3456667777777777777776544
No 401
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=24.56 E-value=4.7e+02 Score=25.53 Aligned_cols=59 Identities=10% Similarity=0.007 Sum_probs=41.9
Q ss_pred HhccCCCCcEEEEeCchHHHHHHHHHHH----hCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 84 LYGTLSITQAVIFCNTRRKVDWLTESML----KKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 84 ll~~~~~~~~iIf~~t~~~~~~l~~~L~----~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
++..+.+..+.|.+.+..-|..-++++. ..|+.+..+.+++++.+|... -...|+.+|+
T Consensus 117 ~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~------Y~~dI~YgT~ 179 (908)
T PRK13107 117 YLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAA------YNADITYGTN 179 (908)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhc------CCCCeEEeCC
Confidence 3345567779999998877766666554 459999999999998654432 2456777776
No 402
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=24.52 E-value=5e+02 Score=23.05 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=15.7
Q ss_pred hhHHHHHHhhcc-CCCC-cceEEEEecccc
Q psy1621 171 RENYIHRIGRGG-RFGR-KGVAINFVTAED 198 (224)
Q Consensus 171 ~~~~~q~~GR~~-R~g~-~~~~~~~~~~~~ 198 (224)
....+.|+|+.. +.|. ++...+++..+|
T Consensus 305 l~~l~ERag~~~~~~GSIT~i~tVlv~~dD 334 (455)
T PRK07960 305 LPALVERAGNGISGGGSITAFYTVLTEGDD 334 (455)
T ss_pred hhHHHHHHhcCCCCCeeeeeEEEEEEcCCC
Confidence 445667777742 3343 455666665544
No 403
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=24.22 E-value=5.1e+02 Score=23.78 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=47.8
Q ss_pred HHHHHHHHhccC---CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 77 KFDTLCDLYGTL---SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 77 k~~~l~~ll~~~---~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
+...+...+.+. +++++.|+.++..+.-...-.+.+.|.-...++.+++.++-. ..++..+.+++|+++
T Consensus 101 ~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~---~~l~~~~~~~li~~~ 172 (647)
T PTZ00237 101 KVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLI---DRIETITPKLIITTN 172 (647)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHH---HHHHhcCCCEEEEcc
Confidence 444455555443 578899999887776666666667788888899998876544 445556677888765
No 404
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=24.18 E-value=2e+02 Score=19.69 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=21.7
Q ss_pred CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 98 NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 98 ~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
...+.++.+-+.|...++++.+++..+-..-....+++++++....+|
T Consensus 29 ~~~e~~~~~~~~l~~~~~gII~iTE~~a~~i~~~~i~~~~~~~~P~II 76 (104)
T PRK01189 29 EGKDLVKKFLEIFNNPKCKYIFVSESTKNMFDKNTLRSLESSSKPLVV 76 (104)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEEHHHHhhCCHHHHHHHhccCCCeEE
Confidence 334444444444444455555555544333322344455544444333
No 405
>KOG0386|consensus
Probab=24.14 E-value=1.4e+02 Score=29.24 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=42.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
.+|.+|.+++..-..+. ..+.+....+..+...-++++|.......+.|+.+||++|..
T Consensus 444 ~GP~LvivPlstL~NW~-~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyE 502 (1157)
T KOG0386|consen 444 QGPFLIIVPLSTLVNWS-SEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYE 502 (1157)
T ss_pred CCCeEEeccccccCCch-hhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHH
Confidence 57888888765443332 223333445556666667999999999999999999999974
No 406
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=24.07 E-value=2.7e+02 Score=21.53 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=23.2
Q ss_pred HHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeE
Q psy1621 77 KFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTV 117 (224)
Q Consensus 77 k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~ 117 (224)
..+.+...+... .+.++ ++.........+.+.|.+.|..+
T Consensus 110 ~~~~l~~~l~~~~~~~~~i-li~~~~~~~~~l~~~L~~~G~~v 151 (249)
T PRK05928 110 ESSELLLELPELLLKGKRV-LYLRGNGGREVLGDTLEERGAEV 151 (249)
T ss_pred cChHHHHhChhhhcCCCEE-EEECCCCCHHHHHHHHHHCCCEE
Confidence 334444444332 34444 45555566778888888887653
No 407
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=23.95 E-value=2.1e+02 Score=18.45 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=42.9
Q ss_pred cEEEEeCchH-H----HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC--CCCCCEEEE
Q psy1621 92 QAVIFCNTRR-K----VDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID--VQQVSLVIN 164 (224)
Q Consensus 92 ~~iIf~~t~~-~----~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd--i~~~~~vi~ 164 (224)
++++.|.+-. + +..+.+.+.+.+....+.|.+.+. +. .+.+++++|..+...++ .+.+ -|+.
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~---------~~-~~~Dliitt~~l~~~~~~~~~~~-~vi~ 70 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDE---------LP-SDADLVVTHASLTDRAKKKAPQA-QHLS 70 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhh---------CC-CCCCEEEEChHHHHHHHhcCCCC-eEEE
Confidence 5677775421 2 445666677667777777776533 22 45678888877655333 2233 3455
Q ss_pred eCCCCChhHHHHHH
Q psy1621 165 YDLPSNRENYIHRI 178 (224)
Q Consensus 165 ~~~p~s~~~~~q~~ 178 (224)
.+.-.+...+.+..
T Consensus 71 v~~~l~~~ei~~i~ 84 (87)
T cd05567 71 VDNFLNTPEYDELI 84 (87)
T ss_pred EeccCChHHHHHHH
Confidence 55555555555544
No 408
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=23.93 E-value=4.6e+02 Score=22.38 Aligned_cols=35 Identities=11% Similarity=-0.147 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHH
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIM 133 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~ 133 (224)
+.+.++...+.+++.+..+.+--||-+.-+-.+.+
T Consensus 69 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~i 103 (383)
T cd08186 69 TVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSA 103 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHH
Confidence 44555555555555555544444444444433333
No 409
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=23.85 E-value=3.8e+02 Score=23.55 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=39.5
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHH
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARD 130 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~ 130 (224)
|...|...+.+....-.+.-||--++-+.++..|.+.|+.+...+|....+...
T Consensus 60 ~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v~a~~~~~~~ey~~ 113 (425)
T PRK05476 60 QTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPVFAWKGETLEEYWE 113 (425)
T ss_pred cHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceEEecCCCCHHHHHH
Confidence 777787777776544556666667777889999999999998888775554433
No 410
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=23.71 E-value=4.7e+02 Score=22.47 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=23.1
Q ss_pred CcEEEEeCchH-----------HHHHHHHHHHhCCCeEEEecCCCCHH
Q psy1621 91 TQAVIFCNTRR-----------KVDWLTESMLKKEFTVSAMHGDMDQN 127 (224)
Q Consensus 91 ~~~iIf~~t~~-----------~~~~l~~~L~~~~~~~~~~~g~~~~~ 127 (224)
++++++++|-. .+-.++++++..|..+..+--+++.-
T Consensus 219 ~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR~ 266 (369)
T cd01134 219 KRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRW 266 (369)
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhHH
Confidence 46777776533 24456677777777777776555543
No 411
>PF09711 Cas_Csn2: CRISPR-associated protein (Cas_Csn2); InterPro: IPR010146 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Csn2 family of Cas proteins, which are found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.; PDB: 3TOC_A 3QHQ_A 3S5U_C.
Probab=23.66 E-value=3.3e+02 Score=20.91 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=30.6
Q ss_pred HHHHHHHHhccCCCCcEEEEeC-----chHHHHHHHHHHHhCCCeEEEecCC
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCN-----TRRKVDWLTESMLKKEFTVSAMHGD 123 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~-----t~~~~~~l~~~L~~~~~~~~~~~g~ 123 (224)
|+-...+++....+.+.+||+| |.++...+.++..-....+..+-.+
T Consensus 117 klieyl~v~~~L~~kKllvfVNl~~YLT~eEl~el~e~i~~~~i~VL~IE~r 168 (188)
T PF09711_consen 117 KLIEYLKVFSELLKKKLLVFVNLRSYLTEEELQELYEYIKYNKIKVLFIENR 168 (188)
T ss_dssp HHHHHHHHHHH-TT--EEEEESGGGGS-HHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHHcCCCEEEEEchHHhcCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 3333445556667889999998 6777888888887777777777654
No 412
>PLN02522 ATP citrate (pro-S)-lyase
Probab=23.64 E-value=4.8e+02 Score=24.16 Aligned_cols=65 Identities=8% Similarity=0.093 Sum_probs=46.6
Q ss_pred HHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCCHHHHHHHHHHhhcCCce
Q psy1621 78 FDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMDQNARDVIMRQFRSGSSR 142 (224)
Q Consensus 78 ~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~~~~r~~~~~~f~~~~~~ 142 (224)
.+.+.+..++. .-.-.|||++-....+.+-+.+...+++ +.++.++.+.....++.+.-++...+
T Consensus 66 f~tv~eA~~~~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r 132 (608)
T PLN02522 66 HGSIEAACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV 132 (608)
T ss_pred cchHHHHHHhCCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE
Confidence 34455656555 3467899999999899999998877774 66677888877666666666665554
No 413
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=23.52 E-value=2.8e+02 Score=19.80 Aligned_cols=40 Identities=13% Similarity=0.291 Sum_probs=22.9
Q ss_pred cHHHHHHHHhccCCCCcEEEEeC------chHHHHHHHHHHHhCCCe
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCN------TRRKVDWLTESMLKKEFT 116 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~------t~~~~~~l~~~L~~~~~~ 116 (224)
.+++...+++++. ..+.|+|+. ...+++.+.+++.+.|+.
T Consensus 24 ~R~~~a~~L~~~g-~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp 69 (155)
T PF02698_consen 24 ERLDEAARLYKAG-YAPRILFSGGYGHGDGRSEAEAMRDYLIELGVP 69 (155)
T ss_dssp HHHHHHHHHHH-H-HT--EEEE--SSTTHTS-HHHHHHHHHHHT---
T ss_pred HHHHHHHHHHhcC-CCCeEEECCCCCCCCCCCHHHHHHHHHHhcccc
Confidence 3666677777653 235577776 567888888888887653
No 414
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=23.19 E-value=5e+02 Score=22.70 Aligned_cols=59 Identities=15% Similarity=0.069 Sum_probs=43.4
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHH
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMR 134 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~ 134 (224)
.|...|...+....-.-.+--||--++-+.++..|.+.|+.+...+|....+....+..
T Consensus 47 ~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v~a~~~~~~~~y~~~~~~ 105 (413)
T cd00401 47 VQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPVFAWKGETLEEYWWCIEQ 105 (413)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceEEEEcCCCHHHHHHHHHH
Confidence 38888888887765455556666666778899999999999999998876655443333
No 415
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=23.11 E-value=1.7e+02 Score=17.10 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=26.3
Q ss_pred EEEEe-CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHH
Q psy1621 93 AVIFC-NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARD 130 (224)
Q Consensus 93 ~iIf~-~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~ 130 (224)
+++|+ .....|..+...|.+.++....+.=....+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~ 40 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELRE 40 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHH
Confidence 45555 567788889899999888777666555454333
No 416
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=23.09 E-value=5.7e+02 Score=23.22 Aligned_cols=117 Identities=10% Similarity=0.198 Sum_probs=68.4
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCC--eEEEecCCCCHHHHHHHH-HHhhcCCceEEEEcC----CcccCCCCCCCCEEE
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKKEF--TVSAMHGDMDQNARDVIM-RQFRSGSSRVLITTD----LLARGIDVQQVSLVI 163 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~~~--~~~~~~g~~~~~~r~~~~-~~f~~~~~~ilv~t~----~~~~Gvdi~~~~~vi 163 (224)
.|.|..+....-.+.+.....+.+. .+..+.+++.. -.... +....+..+|+|+-- .+...+++|-+.
T Consensus 14 ~p~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~dviIsrG~ta~~i~~~~~iPVv~--- 88 (538)
T PRK15424 14 KPVIWTVSVSRLFELFRDISLEFDHLANITPIQLGFEK--AVTYIRKRLATERCDAIIAAGSNGAYLKSRLSVPVIL--- 88 (538)
T ss_pred CCeEEEeeHHHHHHHHHHHHHhcCCCceEEehhhhHHH--HHHHHHHHHhhCCCcEEEECchHHHHHHhhCCCCEEE---
Confidence 4555555444444444444445553 45555666543 33334 445566678999843 355567776442
Q ss_pred EeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q psy1621 164 NYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMP 217 (224)
Q Consensus 164 ~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (224)
.+.|.-+++|..-++.+. .+..-++....-...++.+++.++.++....
T Consensus 89 ---i~~s~~Dil~al~~a~~~--~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~ 137 (538)
T PRK15424 89 ---IKPSGFDVMQALARARKL--TSSIGVVTYQETIPALVAFQKTFNLRIEQRS 137 (538)
T ss_pred ---ecCCHhHHHHHHHHHHhc--CCcEEEEecCcccHHHHHHHHHhCCceEEEE
Confidence 345555678888777544 2333333445566788899999988887654
No 417
>PRK13019 clpS ATP-dependent Clp protease adaptor; Reviewed
Probab=22.74 E-value=2.5e+02 Score=18.87 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=32.2
Q ss_pred EEEEEecCCccHHHHHH-HHhccC----------------CCCcEEEEeCchHHHHHHHHHHHhCCCe
Q psy1621 66 QFYIYIEREDWKFDTLC-DLYGTL----------------SITQAVIFCNTRRKVDWLTESMLKKEFT 116 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~l~-~ll~~~----------------~~~~~iIf~~t~~~~~~l~~~L~~~~~~ 116 (224)
..++..+++-..++.+. .+++.. ..++++++.-+.+.|+..+..+.+.|+.
T Consensus 22 ykViL~NDd~~t~dfVi~~vl~~vf~~s~~~A~~iml~vH~~G~avv~~~~~E~AE~~~~~l~~~glt 89 (94)
T PRK13019 22 YKVIVLNDDFNTFEHVVNCLLKAIPGMSEDRAWRLMITAHKEGSAVVWVGPLEQAELYHQQLTDAGLT 89 (94)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHcccc
Confidence 34445555555666666 344431 3567778888888888777777766643
No 418
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=22.60 E-value=4.7e+02 Score=22.07 Aligned_cols=27 Identities=4% Similarity=-0.229 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHhCCCeEEEecCCCCH
Q psy1621 100 RRKVDWLTESMLKKEFTVSAMHGDMDQ 126 (224)
Q Consensus 100 ~~~~~~l~~~L~~~~~~~~~~~g~~~~ 126 (224)
.+.++.+.+.+++.+..+.+--||-+.
T Consensus 63 ~~~v~~~~~~~~~~~~D~IIavGGGs~ 89 (367)
T cd08182 63 LEDLAAGIRLLREFGPDAVLAVGGGSV 89 (367)
T ss_pred HHHHHHHHHHHHhcCcCEEEEeCCcHH
Confidence 334444444444444443333333333
No 419
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=22.53 E-value=4.9e+02 Score=22.23 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=4.8
Q ss_pred HHHHHHhCCCeE
Q psy1621 106 LTESMLKKEFTV 117 (224)
Q Consensus 106 l~~~L~~~~~~~ 117 (224)
+.+.|.+.++.+
T Consensus 42 v~~~L~~~~~~~ 53 (386)
T cd08191 42 LVQALAAAGVEV 53 (386)
T ss_pred HHHHHHHcCCeE
Confidence 333444444443
No 420
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=22.47 E-value=1.7e+02 Score=19.27 Aligned_cols=35 Identities=9% Similarity=0.318 Sum_probs=27.8
Q ss_pred CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 98 NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 98 ~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
-|+++|+.++..++...+++. .+++|..++++...
T Consensus 31 it~~QA~~I~~~lr~k~inIf------n~~~r~~llkeia~ 65 (85)
T PF11116_consen 31 ITKKQAEQIANILRGKNINIF------NEQERKKLLKEIAK 65 (85)
T ss_pred CCHHHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHHH
Confidence 378999999999988877763 57888888887753
No 421
>KOG2792|consensus
Probab=22.39 E-value=4.3e+02 Score=21.56 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=47.8
Q ss_pred cCCccHHHHHHHHhccCCC---CcEEEEeC-chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy1621 72 EREDWKFDTLCDLYGTLSI---TQAVIFCN-TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITT 147 (224)
Q Consensus 72 ~~~~~k~~~l~~ll~~~~~---~~~iIf~~-t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t 147 (224)
+++-.|+...++.+....+ .|+-|-|. -+...+.++++++....++.-++|. .++-.++-+.| +|-.+|
T Consensus 156 PdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT--~eqvk~vak~y-----RVYfs~ 228 (280)
T KOG2792|consen 156 PDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGT--TEQVKQVAKKY-----RVYFST 228 (280)
T ss_pred hHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCC--HHHHHHHHHHh-----EEeecc
Confidence 4455688888888876643 34666664 4667888889998887788878886 55666777776 455555
No 422
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=22.26 E-value=2.9e+02 Score=19.49 Aligned_cols=85 Identities=14% Similarity=0.240 Sum_probs=44.1
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC--
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI-- 154 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv-- 154 (224)
--..+...+......++.|+-.|.+.++.+++.+....+.+..+. .. ...+ .+.+++|++...++-+
T Consensus 23 ~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~-~~-----~~~~-----~~~DivI~aT~~~~~~i~ 91 (135)
T PF01488_consen 23 AARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLE-DL-----EEAL-----QEADIVINATPSGMPIIT 91 (135)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGG-GH-----CHHH-----HTESEEEE-SSTTSTSST
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHH-HH-----HHHH-----hhCCeEEEecCCCCcccC
Confidence 444455555555555677777888888888887733333333221 11 1122 2346777766555432
Q ss_pred --CCCCC----CEEEEeCCCCChh
Q psy1621 155 --DVQQV----SLVINYDLPSNRE 172 (224)
Q Consensus 155 --di~~~----~~vi~~~~p~s~~ 172 (224)
.+... ..+++...|.+.+
T Consensus 92 ~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 92 EEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp HHHHTTTCHHCSEEEES-SS-SB-
T ss_pred HHHHHHHHhhhhceeccccCCCCC
Confidence 22333 4788888887754
No 423
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=22.09 E-value=3e+02 Score=19.56 Aligned_cols=69 Identities=9% Similarity=0.154 Sum_probs=42.5
Q ss_pred HHHHHhccCCCCcEEEEeCc--hHHHHHHHHHHHhCCCeEEEecCCCCHH-HHHHHHHHhh--cCCceEEEEcC
Q psy1621 80 TLCDLYGTLSITQAVIFCNT--RRKVDWLTESMLKKEFTVSAMHGDMDQN-ARDVIMRQFR--SGSSRVLITTD 148 (224)
Q Consensus 80 ~l~~ll~~~~~~~~iIf~~t--~~~~~~l~~~L~~~~~~~~~~~g~~~~~-~r~~~~~~f~--~~~~~ilv~t~ 148 (224)
.+.+.+.......+++...+ .+..+.+...+...+.++.++..+++.. .-...++... .+.++++|...
T Consensus 15 ~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~a 88 (167)
T PF00106_consen 15 ALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPLDILINNA 88 (167)
T ss_dssp HHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEEC
T ss_pred HHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33443433333344555555 5778888888888888888888876543 4444555544 46777777654
No 424
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=22.05 E-value=5e+02 Score=22.08 Aligned_cols=35 Identities=11% Similarity=-0.096 Sum_probs=16.9
Q ss_pred CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHH
Q psy1621 98 NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVI 132 (224)
Q Consensus 98 ~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~ 132 (224)
++.+.++...+.++..+..+.+=-||-+.-+-.+.
T Consensus 64 p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKa 98 (375)
T cd08194 64 PTDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKA 98 (375)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHH
Confidence 34455555555555555554444444444443333
No 425
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=21.66 E-value=3.9e+02 Score=21.37 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=29.9
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 117 VSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 117 ~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
..+.=|+++..+.-++.+.+. .-++++.+++...-.|+
T Consensus 182 lTvqPgKlt~~eAveIV~ey~--~~r~ilnSD~~s~~sd~ 219 (254)
T COG1099 182 LTVQPGKLTVEEAVEIVREYG--AERIILNSDAGSAASDP 219 (254)
T ss_pred EEecCCcCCHHHHHHHHHHhC--cceEEEecccccccccc
Confidence 344449999999999999986 56789999888766664
No 426
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=21.63 E-value=3.6e+02 Score=20.27 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=33.0
Q ss_pred HHHHhccCCCCcEEEEeCc--------hHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 81 LCDLYGTLSITQAVIFCNT--------RRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 81 l~~ll~~~~~~~~iIf~~t--------~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+.++-+....++++|+.|+ .++++.+.+.| ++.+. .|+...|.-..++++-|...
T Consensus 68 ~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpvl-~h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 68 LNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL---GIPVL-RHRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred HHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh---CCcEE-EeCCCCCccHHHHHHHHhhc
Confidence 3333333344579999997 45666666665 55543 45544555566788888643
No 427
>PRK00033 clpS ATP-dependent Clp protease adaptor protein ClpS; Reviewed
Probab=21.35 E-value=2.8e+02 Score=18.89 Aligned_cols=52 Identities=10% Similarity=0.028 Sum_probs=30.6
Q ss_pred EEEEEecCCccHHHHHHHHhccC----------------CCCcEEEEeCchHHHHHHHHHHHhCCCeE
Q psy1621 66 QFYIYIEREDWKFDTLCDLYGTL----------------SITQAVIFCNTRRKVDWLTESMLKKEFTV 117 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~l~~ll~~~----------------~~~~~iIf~~t~~~~~~l~~~L~~~~~~~ 117 (224)
..++..+++-..++.+...|... ..++++|..-+.+.|+..+..+...++.+
T Consensus 28 y~ViL~NDd~ntmd~Vv~vL~~vf~~s~~~A~~iml~vH~~G~avv~~~~~e~AE~~~~~l~~~~L~~ 95 (100)
T PRK00033 28 YKVLLHNDDYTPMEFVVYVLQKFFGYDRERATQIMLEVHNEGKAVVGVCTREVAETKVEQVHQHGLLC 95 (100)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcEEEEEEcHHHHHHHHHHHHcCCCeE
Confidence 44455555555666666555431 34666666667777777777665555443
No 428
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=21.22 E-value=3e+02 Score=21.64 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=36.3
Q ss_pred cHHHHHHHHhccCCCCcEEEEeC-----chHHHHHHHHHHHhCCCeEEEecCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCN-----TRRKVDWLTESMLKKEFTVSAMHGD 123 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~-----t~~~~~~l~~~L~~~~~~~~~~~g~ 123 (224)
.|+....+++.+....++++|+| |.++...+.+........+..+-..
T Consensus 148 eki~~~lki~~~l~~kki~ifvNl~~YLt~eei~el~~~i~~~~~~vlliE~~ 200 (216)
T TIGR01866 148 EKCLEILQIFKELTKKKLFIFINSGAFLTKDELAELQKFISYTKLTVLFLEPR 200 (216)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEcHHHhCCHHHHHHHHHHHHHhcccEEEEecc
Confidence 37777777778888899999998 6677777888777666666665544
No 429
>KOG0952|consensus
Probab=21.18 E-value=3e+02 Score=27.30 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=50.1
Q ss_pred eEEEEEecCCccHHHH----HHHHhccC--------CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHH
Q psy1621 65 RQFYIYIEREDWKFDT----LCDLYGTL--------SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNA 128 (224)
Q Consensus 65 ~~~~~~~~~~~~k~~~----l~~ll~~~--------~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~ 128 (224)
+...+..+....|... +...+++. +..++|-.+++++-|.++++.+.+. |+.+..++|++.-..
T Consensus 127 eNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~ 206 (1230)
T KOG0952|consen 127 ENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTK 206 (1230)
T ss_pred CCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhH
Confidence 3445555555556543 23444431 3568888889999888888776553 889999999986543
Q ss_pred HHHHHHHhhcCCceEEEEcC
Q psy1621 129 RDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 129 r~~~~~~f~~~~~~ilv~t~ 148 (224)
-+ +. +.+|+|+|+
T Consensus 207 te-i~------~tqiiVTTP 219 (1230)
T KOG0952|consen 207 TE-IA------DTQIIVTTP 219 (1230)
T ss_pred HH-HH------hcCEEEecc
Confidence 33 22 346899998
No 430
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=21.13 E-value=5.9e+02 Score=22.62 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=38.2
Q ss_pred CCccHHHHHHHHhccCC-----CCcEEEEeCc---hHHHHHHHHHHHhCC---CeEEE-ecCCCCHHHHH-------HHH
Q psy1621 73 REDWKFDTLCDLYGTLS-----ITQAVIFCNT---RRKVDWLTESMLKKE---FTVSA-MHGDMDQNARD-------VIM 133 (224)
Q Consensus 73 ~~~~k~~~l~~ll~~~~-----~~~~iIf~~t---~~~~~~l~~~L~~~~---~~~~~-~~g~~~~~~r~-------~~~ 133 (224)
..-.|..++..+.+... .+-++||+-- ..++..+.+.+...+ ..+.+ -.+..++-+|. .+-
T Consensus 150 ~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiA 229 (458)
T TIGR01041 150 SGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAA 229 (458)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 33458888777666432 1236777753 333333444443332 22333 33566666655 355
Q ss_pred HHhh--cCCceEEEEcC
Q psy1621 134 RQFR--SGSSRVLITTD 148 (224)
Q Consensus 134 ~~f~--~~~~~ilv~t~ 148 (224)
+-|+ +|+.-+|+..+
T Consensus 230 Eyfr~d~G~~VLli~Ds 246 (458)
T TIGR01041 230 EYLAFEKDMHVLVILTD 246 (458)
T ss_pred HHHHHccCCcEEEEEcC
Confidence 6677 35544444444
No 431
>PF03846 SulA: Cell division inhibitor SulA; InterPro: IPR004596 All proteins in this family for which the functions are known are cell division inhibitors. In Escherichia coli, SulA is one of the SOS regulated genes. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, SulA binds a polymerisation-competent form of ftsZ in a 1:1 ratio, thus inhibiting ftsZ polymerisation and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. The expression of SulA is repressed by LexA. The N terminus of SulA may be involved in recognising the cell division apparatus.; GO: 0009432 SOS response, 0051782 negative regulation of cell division, 0009276 Gram-negative-bacterium-type cell wall; PDB: 1OFU_X 1OFT_A.
Probab=21.10 E-value=3.1e+02 Score=19.37 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=42.2
Q ss_pred HHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCC---eEEEecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy1621 81 LCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEF---TVSAMHGDMDQNARDVIMRQFRSGSSRVLIT 146 (224)
Q Consensus 81 l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~---~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~ 146 (224)
|.-+++.+ ...+.|.|..-.... ...+|+..|+ ++..+|..-+...-...++.++.|...++++
T Consensus 49 LlPlL~qLsqqsRWllwi~P~~~l--s~~wL~~aGl~~~kvl~l~~~~~~~tl~amekAL~sGn~s~Vl~ 116 (119)
T PF03846_consen 49 LLPLLRQLSQQSRWLLWIAPPQKL--SRQWLQQAGLPLEKVLQLHPRNPQSTLEAMEKALRSGNYSAVLG 116 (119)
T ss_dssp HHHHHHHHHSSSSEEEEES--TTS---HHHHHHTT--CCCEEEE--SSTTHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHhCccceEEEEECCCccc--CHHHHHHcCCChhHeEEeCCCCcccHHHHHHHHHHhCCCeEEEE
Confidence 34444443 357899999655433 3366777765 6888998888888889999999999888775
No 432
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=21.00 E-value=3.8e+02 Score=21.57 Aligned_cols=61 Identities=16% Similarity=0.106 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCC
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVS 160 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~ 160 (224)
+...++.+...++..+..+.+--|+=.--+..+ ...|+.+..-+.|.|...--|+--|.+.
T Consensus 60 ~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K-~~A~~~~~p~isVPTa~S~DG~aS~~As 120 (250)
T PF13685_consen 60 DEDEVEKLVEALRPKDADLIIGVGGGTIIDIAK-YAAFELGIPFISVPTAASHDGFASPVAS 120 (250)
T ss_dssp BHHHHHHHHTTS--TT--EEEEEESHHHHHHHH-HHHHHHT--EEEEES--SSGGGTSSEEE
T ss_pred CHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHH-HHHHhcCCCEEEeccccccccccCCCee
Confidence 444444444444433433333233222222221 3345566677888888776666554433
No 433
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=20.96 E-value=3.2e+02 Score=19.52 Aligned_cols=70 Identities=7% Similarity=0.131 Sum_probs=44.6
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
..+.|.+..++.. +-.+++......+.+.+.+...+..+.+++|. +.+.+.....+.+++++.-....|+
T Consensus 35 n~~~L~~q~~~f~--p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~------~~l~~~~~~~~~D~vv~Ai~G~aGL 104 (129)
T PF02670_consen 35 NIEKLAEQAREFK--PKYVVIADEEAYEELKKALPSKGPGIEVLSGP------EGLEELAEEPEVDIVVNAIVGFAGL 104 (129)
T ss_dssp THHHHHHHHHHHT---SEEEESSHHHHHHHHHHHHHTTSSSEEEESH------HHHHHHHTHTT-SEEEE--SSGGGH
T ss_pred CHHHHHHHHHHhC--CCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh------HHHHHHhcCCCCCEEEEeCcccchH
Confidence 6777777777654 44467777777888888887677777788884 3334444556777777766555554
No 434
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=20.87 E-value=2.9e+02 Score=18.94 Aligned_cols=62 Identities=10% Similarity=-0.002 Sum_probs=38.7
Q ss_pred EEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCC--ceEEEEcC-CcccCCC
Q psy1621 94 VIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGS--SRVLITTD-LLARGID 155 (224)
Q Consensus 94 iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~--~~ilv~t~-~~~~Gvd 155 (224)
|...++...|....++|.+.++.+..++=.-.+..+.++.+.+.... ..-++.|. ..-+.++
T Consensus 3 iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~ 67 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALN 67 (117)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCC
Confidence 34456788888888999999998888876555555555555554322 34455553 3434443
No 435
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=20.82 E-value=4.7e+02 Score=25.55 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=39.4
Q ss_pred HHHHHhccCCCCcEEEEeCch----HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHH
Q psy1621 80 TLCDLYGTLSITQAVIFCNTR----RKVDWLTESMLKKEFTVSAMHGDMDQNARDVIM 133 (224)
Q Consensus 80 ~l~~ll~~~~~~~~iIf~~t~----~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~ 133 (224)
.|.-++..+.+..+-|.+.+. ..++++.......|..++.+.+++++++|+...
T Consensus 116 tlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY 173 (939)
T PRK12902 116 TLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNY 173 (939)
T ss_pred HHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhc
Confidence 334555677788888888764 445556566666799999999999999888554
No 436
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=20.82 E-value=4.1e+02 Score=21.81 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=48.6
Q ss_pred HHHHHHHHhccC-CCCcEEEEeC-chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-cccC
Q psy1621 77 KFDTLCDLYGTL-SITQAVIFCN-TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL-LARG 153 (224)
Q Consensus 77 k~~~l~~ll~~~-~~~~~iIf~~-t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~-~~~G 153 (224)
..++|.+.+.+. ..+.+|||.+ .-++++.++..+.-...+-.+++|....-. .. -|+.++++-++. ++.=
T Consensus 165 N~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir-----~~--~Gkk~~~ies~~s~eeL 237 (300)
T COG4152 165 NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIR-----RS--FGKKRLVIESDLSLEEL 237 (300)
T ss_pred hHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHH-----Hh--cCCceEEEeccCchHHH
Confidence 445555555544 4678888875 456688888876544445567788743211 11 366777777654 4445
Q ss_pred CCCCCCCEEE
Q psy1621 154 IDVQQVSLVI 163 (224)
Q Consensus 154 vdi~~~~~vi 163 (224)
-|+|++..+.
T Consensus 238 ~~ipgi~~~~ 247 (300)
T COG4152 238 ANIPGILKIT 247 (300)
T ss_pred hcCCCceeee
Confidence 5677776554
No 437
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=20.52 E-value=1.2e+02 Score=20.80 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=25.9
Q ss_pred HHHHhCCCeEEEecCCCCHHHHHHHHHHhhc-CCceEEEEcCC
Q psy1621 108 ESMLKKEFTVSAMHGDMDQNARDVIMRQFRS-GSSRVLITTDL 149 (224)
Q Consensus 108 ~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~-~~~~ilv~t~~ 149 (224)
++|++.|+.+..+...-. ..+..+.+.+++ |++.++|.|+.
T Consensus 36 ~~L~~~Gi~~~~v~~~~~-~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 36 RVLADAGIPVRAVSKRHE-DGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred HHHHHcCCceEEEEecCC-CCCcHHHHHHhCCCCEEEEEEcCC
Confidence 456667887655432110 013457888899 99998888764
No 438
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=20.34 E-value=5.7e+02 Score=22.14 Aligned_cols=37 Identities=11% Similarity=-0.078 Sum_probs=19.6
Q ss_pred CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHH
Q psy1621 98 NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMR 134 (224)
Q Consensus 98 ~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~ 134 (224)
++.+.++...+.+++.+..+.+--||-+.-+-.+.+.
T Consensus 64 p~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 64 PTDESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 3455555555555555555555555555544444443
No 439
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=20.34 E-value=3.1e+02 Score=19.13 Aligned_cols=39 Identities=10% Similarity=0.296 Sum_probs=28.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
..|++|-++-++..+.+...+.+. ++++++.+...++|.
T Consensus 30 ~~P~iV~fdmk~tld~F~~q~~~~---------~lte~q~~~~~~rF~ 68 (112)
T TIGR02744 30 NSPVTVAFDMKQTLDAFFDSASQK---------KLSEAQQKALLGRFN 68 (112)
T ss_pred CCCeEEEEecHHHHHHHHHHHhhc---------CCCHHHHHHHHHHHH
Confidence 467888888999998888877554 356777776666664
No 440
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=20.32 E-value=2.7e+02 Score=18.44 Aligned_cols=39 Identities=8% Similarity=0.136 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
+++++..+...|...++....+.=.++++.|....+...
T Consensus 15 ~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~ 53 (92)
T cd03030 15 IKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVP 53 (92)
T ss_pred HHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcC
Confidence 577888899999999998888888888888887776653
No 441
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=20.27 E-value=5.2e+02 Score=21.65 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=40.1
Q ss_pred cEEEEe--CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 92 QAVIFC--NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 92 ~~iIf~--~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
...+|. ++.+.++.+.+.+++.+..+.+--||-+.-+-.+.+.... +..-|.|.|..
T Consensus 52 ~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-~~p~i~VPTT~ 110 (347)
T cd08172 52 FVLRYDGECSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-GVPVITVPTLA 110 (347)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-CCCEEEecCcc
Confidence 345664 7888899999999888888777777777766666665543 44456666653
No 442
>KOG0327|consensus
Probab=20.26 E-value=2.1e+02 Score=24.70 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=17.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK 113 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~ 113 (224)
...++|++.+|++-+....+.....
T Consensus 93 ke~qalilaPtreLa~qi~~v~~~l 117 (397)
T KOG0327|consen 93 KETQALILAPTRELAQQIQKVVRAL 117 (397)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhh
Confidence 3457888888888777777665544
No 443
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=20.04 E-value=3.2e+02 Score=19.18 Aligned_cols=50 Identities=12% Similarity=-0.029 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCCeEEEe-cCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 103 VDWLTESMLKKEFTVSAM-HGDMDQNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 103 ~~~l~~~L~~~~~~~~~~-~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
...+++.|.+.+..+... +-..++++-.+.+++..+. .+++++|--.+.|
T Consensus 21 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g 71 (133)
T cd00758 21 GPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASRE-ADLVLTTGGTGVG 71 (133)
T ss_pred HHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhc-CCEEEECCCCCCC
Confidence 344555566666554332 2333344333444433322 5666666443333
No 444
>PRK13529 malate dehydrogenase; Provisional
Probab=20.04 E-value=2.4e+02 Score=25.71 Aligned_cols=54 Identities=11% Similarity=0.154 Sum_probs=32.8
Q ss_pred EEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 93 AVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 93 ~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
-|||++|+-.+-.-+..+-...- +.+-+--....-.++++.|....++++|.||
T Consensus 101 PivYTPTVG~ac~~~s~~~r~p~--Glyis~~d~g~i~~~l~nwp~~~v~viVVTD 154 (563)
T PRK13529 101 PIIYTPTVGEACERFSHIYRRPR--GLFISYDDRDRIEDILQNAPNRDIKLIVVTD 154 (563)
T ss_pred CeeecccHHHHHHHHhhcccCCC--ceEeccCCHHHHHHHHhcCCcccceEEEEeC
Confidence 47999998875444443322211 2233333455556667777777888999988
Done!