Query psy1621
Match_columns 224
No_of_seqs 157 out of 2056
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 23:38:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fuk_A Eukaryotic initiation f 100.0 3.2E-34 1.1E-38 215.4 16.9 163 62-224 2-164 (165)
2 2j0s_A ATP-dependent RNA helic 100.0 1.5E-34 5.1E-39 245.7 16.5 221 1-224 185-410 (410)
3 2hjv_A ATP-dependent RNA helic 100.0 1.4E-33 4.7E-38 211.5 19.6 158 59-217 5-162 (163)
4 2db3_A ATP-dependent RNA helic 100.0 3E-34 1E-38 246.3 17.7 218 1-223 209-434 (434)
5 1t5i_A C_terminal domain of A 100.0 1.2E-33 4E-38 213.7 18.6 159 61-220 3-162 (172)
6 2rb4_A ATP-dependent RNA helic 100.0 1.9E-33 6.6E-38 213.1 19.2 161 60-220 4-170 (175)
7 3eiq_A Eukaryotic initiation f 100.0 1.9E-34 6.4E-39 245.0 12.5 221 1-224 189-414 (414)
8 2jgn_A DBX, DDX3, ATP-dependen 100.0 6.9E-33 2.3E-37 211.8 17.1 163 59-222 15-178 (185)
9 1s2m_A Putative ATP-dependent 100.0 3.9E-33 1.4E-37 236.1 15.2 218 1-222 169-390 (400)
10 2p6n_A ATP-dependent RNA helic 100.0 1.7E-32 6E-37 210.6 17.4 163 59-223 25-188 (191)
11 2i4i_A ATP-dependent RNA helic 100.0 1E-32 3.5E-37 234.7 15.6 218 1-222 181-408 (417)
12 3eaq_A Heat resistant RNA depe 100.0 2.2E-31 7.4E-36 207.7 19.1 154 64-218 6-159 (212)
13 1hv8_A Putative ATP-dependent 100.0 1.2E-31 4.2E-36 223.8 17.2 212 1-217 153-365 (367)
14 3fht_A ATP-dependent RNA helic 100.0 7.6E-32 2.6E-36 228.6 15.5 217 1-220 174-403 (412)
15 1xti_A Probable ATP-dependent 100.0 1.5E-31 5E-36 225.6 15.9 216 1-220 158-381 (391)
16 3i32_A Heat resistant RNA depe 100.0 1.5E-30 5.3E-35 212.4 18.2 154 64-218 3-156 (300)
17 3pey_A ATP-dependent RNA helic 100.0 6.1E-31 2.1E-35 221.6 15.7 215 1-218 151-379 (395)
18 1oyw_A RECQ helicase, ATP-depe 100.0 4.9E-30 1.7E-34 224.6 17.6 203 1-207 145-353 (523)
19 1fuu_A Yeast initiation factor 100.0 2.7E-33 9.1E-38 236.3 -3.0 221 1-224 168-393 (394)
20 2yjt_D ATP-dependent RNA helic 99.9 8.7E-33 3E-37 208.5 0.0 157 62-218 2-158 (170)
21 2v1x_A ATP-dependent DNA helic 100.0 1.2E-29 3.9E-34 224.8 17.0 202 1-205 171-382 (591)
22 3i5x_A ATP-dependent RNA helic 100.0 1.9E-29 6.4E-34 222.7 17.5 212 1-215 232-467 (563)
23 3sqw_A ATP-dependent RNA helic 100.0 9.6E-30 3.3E-34 225.4 14.3 212 1-215 181-416 (579)
24 3fmp_B ATP-dependent RNA helic 100.0 3.8E-32 1.3E-36 235.6 -2.1 216 1-219 241-469 (479)
25 2z0m_A 337AA long hypothetical 100.0 5.9E-29 2E-33 205.4 10.2 200 1-211 135-336 (337)
26 3fho_A ATP-dependent RNA helic 100.0 4.4E-30 1.5E-34 224.4 3.4 217 1-220 265-494 (508)
27 3oiy_A Reverse gyrase helicase 99.9 3.6E-26 1.2E-30 194.6 15.7 180 23-217 191-385 (414)
28 1yks_A Genome polyprotein [con 99.9 4.9E-26 1.7E-30 195.4 5.5 122 90-216 177-321 (440)
29 2va8_A SSO2462, SKI2-type heli 99.9 4.9E-24 1.7E-28 193.1 16.6 121 76-198 240-409 (715)
30 2xgj_A ATP-dependent RNA helic 99.9 5.7E-24 2E-28 197.9 13.8 125 81-205 334-508 (1010)
31 2zj8_A DNA helicase, putative 99.9 6E-24 2.1E-28 192.6 13.5 208 1-218 144-406 (720)
32 2d7d_A Uvrabc system protein B 99.9 2E-23 6.8E-28 187.1 15.8 129 77-206 430-565 (661)
33 2whx_A Serine protease/ntpase/ 99.9 1.4E-24 4.7E-29 193.1 7.5 117 90-211 355-495 (618)
34 2p6r_A Afuhel308 helicase; pro 99.9 1.3E-23 4.4E-28 190.0 13.5 120 77-198 231-389 (702)
35 1c4o_A DNA nucleotide excision 99.9 3.4E-23 1.2E-27 185.6 15.8 130 77-207 424-560 (664)
36 4gl2_A Interferon-induced heli 99.9 1.8E-23 6.2E-28 188.7 13.7 106 90-197 400-519 (699)
37 2xau_A PRE-mRNA-splicing facto 99.9 8.4E-25 2.9E-29 198.8 4.3 168 24-199 239-445 (773)
38 1wp9_A ATP-dependent RNA helic 99.9 2.3E-23 7.9E-28 179.0 12.7 127 74-201 341-479 (494)
39 3l9o_A ATP-dependent RNA helic 99.9 4.8E-24 1.6E-28 200.0 8.1 118 80-197 431-597 (1108)
40 4a4z_A Antiviral helicase SKI2 99.9 1E-22 3.6E-27 189.3 16.1 128 77-205 323-502 (997)
41 1z5z_A Helicase of the SNF2/RA 99.9 5.1E-23 1.7E-27 165.9 11.6 125 73-197 93-224 (271)
42 4a2p_A RIG-I, retinoic acid in 99.9 3.7E-23 1.3E-27 181.6 11.1 125 75-201 371-512 (556)
43 2eyq_A TRCF, transcription-rep 99.9 4.6E-23 1.6E-27 194.2 12.3 167 24-197 750-922 (1151)
44 2ykg_A Probable ATP-dependent 99.9 1.2E-23 4.2E-28 189.7 7.4 142 74-217 378-540 (696)
45 1gku_B Reverse gyrase, TOP-RG; 99.9 3.6E-23 1.2E-27 193.7 10.8 174 23-211 213-468 (1054)
46 2jlq_A Serine protease subunit 99.9 7.5E-24 2.6E-28 182.4 5.7 102 90-196 188-310 (451)
47 2wv9_A Flavivirin protease NS2 99.9 6.5E-23 2.2E-27 183.6 11.4 117 89-210 409-549 (673)
48 4ddu_A Reverse gyrase; topoiso 99.9 1.4E-22 4.7E-27 190.1 13.8 174 24-210 249-503 (1104)
49 3tbk_A RIG-I helicase domain; 99.9 2.3E-23 8E-28 182.6 6.9 129 75-205 370-515 (555)
50 3jux_A Protein translocase sub 99.9 7.9E-22 2.7E-26 174.3 16.1 164 28-198 412-588 (822)
51 2v6i_A RNA helicase; membrane, 99.9 3.4E-23 1.2E-27 177.3 6.9 100 90-194 171-288 (431)
52 2z83_A Helicase/nucleoside tri 99.9 4E-23 1.4E-27 178.3 7.0 103 90-197 190-313 (459)
53 3dmq_A RNA polymerase-associat 99.9 6.4E-22 2.2E-26 184.0 14.2 136 74-209 487-625 (968)
54 1tf5_A Preprotein translocase 99.9 3E-22 1E-26 179.9 11.4 128 68-198 409-546 (844)
55 3o8b_A HCV NS3 protease/helica 99.9 2.2E-23 7.4E-28 185.1 3.2 119 88-216 394-537 (666)
56 1gm5_A RECG; helicase, replica 99.9 6.6E-23 2.3E-27 185.9 6.1 189 1-200 496-700 (780)
57 2oca_A DAR protein, ATP-depend 99.9 4.8E-23 1.6E-27 179.8 4.8 112 77-189 332-447 (510)
58 4a2q_A RIG-I, retinoic acid in 99.9 4.5E-22 1.6E-26 182.1 11.4 124 75-200 612-752 (797)
59 3rc3_A ATP-dependent RNA helic 99.9 7.9E-22 2.7E-26 176.4 12.3 116 91-208 321-455 (677)
60 4a2w_A RIG-I, retinoic acid in 99.9 1.3E-21 4.3E-26 181.6 11.3 124 75-200 612-752 (936)
61 2fsf_A Preprotein translocase 99.8 4.7E-21 1.6E-25 171.9 12.5 128 68-198 418-584 (853)
62 4f92_B U5 small nuclear ribonu 99.8 4.2E-21 1.4E-25 186.0 9.0 200 1-205 213-481 (1724)
63 4f92_B U5 small nuclear ribonu 99.8 3E-20 1E-24 180.1 13.9 118 88-205 1153-1316(1724)
64 1nkt_A Preprotein translocase 99.8 3E-20 1E-24 167.2 12.8 129 68-199 437-619 (922)
65 2fwr_A DNA repair protein RAD2 99.8 8.5E-21 2.9E-25 164.0 8.0 118 75-197 334-454 (472)
66 3h1t_A Type I site-specific re 99.8 4.4E-20 1.5E-24 163.8 12.2 97 89-186 438-545 (590)
67 1z63_A Helicase of the SNF2/RA 99.8 9.1E-20 3.1E-24 158.6 13.6 123 75-197 324-453 (500)
68 1z3i_X Similar to RAD54-like; 99.8 5.7E-19 1.9E-23 158.1 15.5 123 75-197 398-528 (644)
69 3mwy_W Chromo domain-containin 99.8 1.1E-18 3.7E-23 159.8 13.4 134 75-208 555-697 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 7.9E-12 2.7E-16 116.5 14.6 104 90-194 537-706 (1038)
71 2ipc_A Preprotein translocase 99.0 2.6E-09 8.9E-14 96.8 12.7 127 70-198 421-699 (997)
72 3hgt_A HDA1 complex subunit 3; 98.8 9.3E-08 3.2E-12 77.8 12.3 121 74-199 107-239 (328)
73 2vl7_A XPD; helicase, unknown 98.7 6.9E-08 2.4E-12 84.7 9.1 102 89-196 383-520 (540)
74 4a15_A XPD helicase, ATP-depen 98.5 1E-06 3.5E-11 78.4 11.1 104 89-196 447-583 (620)
75 3crv_A XPD/RAD3 related DNA he 98.2 2.9E-05 9.8E-10 68.2 14.0 103 89-197 392-531 (551)
76 1gm5_A RECG; helicase, replica 96.6 0.015 5E-07 53.1 10.7 101 67-167 392-499 (780)
77 3oiy_A Reverse gyrase helicase 96.2 0.016 5.5E-07 48.4 8.0 99 68-166 40-147 (414)
78 1t6n_A Probable ATP-dependent 95.3 0.13 4.5E-06 38.7 9.3 97 67-166 54-166 (220)
79 4ddu_A Reverse gyrase; topoiso 95.1 0.063 2.2E-06 50.9 8.4 100 67-166 96-204 (1104)
80 2eyq_A TRCF, transcription-rep 94.6 0.23 8E-06 47.3 10.9 99 66-164 626-731 (1151)
81 1oyw_A RECQ helicase, ATP-depe 94.4 0.12 4.2E-06 44.8 7.9 81 67-149 43-124 (523)
82 2oxc_A Probable ATP-dependent 94.1 0.22 7.6E-06 37.9 8.0 93 67-164 64-172 (230)
83 2v1x_A ATP-dependent DNA helic 94.0 0.14 4.7E-06 45.2 7.5 81 67-149 62-145 (591)
84 3ber_A Probable ATP-dependent 94.0 0.49 1.7E-05 36.5 9.9 96 67-166 83-194 (249)
85 3fe2_A Probable ATP-dependent 93.9 0.38 1.3E-05 36.8 9.1 95 67-165 69-183 (242)
86 1xti_A Probable ATP-dependent 92.8 0.72 2.5E-05 37.6 9.6 95 67-164 48-158 (391)
87 1vec_A ATP-dependent RNA helic 92.4 0.83 2.9E-05 33.7 8.8 94 67-164 43-152 (206)
88 1qde_A EIF4A, translation init 91.8 0.64 2.2E-05 34.9 7.5 94 67-165 54-162 (224)
89 2gxq_A Heat resistant RNA depe 91.7 2.9 9.9E-05 30.6 11.1 96 67-166 41-152 (207)
90 3iuy_A Probable ATP-dependent 91.6 0.63 2.1E-05 35.1 7.2 73 89-165 93-174 (228)
91 3bor_A Human initiation factor 90.8 0.9 3.1E-05 34.6 7.5 96 67-165 70-180 (237)
92 3fe2_A Probable ATP-dependent 90.7 0.022 7.5E-07 44.0 -1.9 53 1-56 182-235 (242)
93 3gk5_A Uncharacterized rhodane 90.6 0.58 2E-05 31.1 5.5 45 81-125 45-90 (108)
94 1wrb_A DJVLGB; RNA helicase, D 90.3 1.2 4E-05 34.2 7.8 71 91-165 101-181 (253)
95 1wp9_A ATP-dependent RNA helic 89.6 2.5 8.6E-05 35.1 9.9 93 67-164 26-131 (494)
96 1fuu_A Yeast initiation factor 89.2 1.9 6.4E-05 35.1 8.7 93 67-164 61-168 (394)
97 1hv8_A Putative ATP-dependent 89.1 5.8 0.0002 31.6 11.5 94 66-164 46-153 (367)
98 1gku_B Reverse gyrase, TOP-RG; 88.9 0.72 2.5E-05 43.5 6.5 96 67-164 74-181 (1054)
99 2pl3_A Probable ATP-dependent 88.8 0.86 2.9E-05 34.5 6.0 93 67-164 65-177 (236)
100 1wrb_A DJVLGB; RNA helicase, D 88.6 0.03 1E-06 43.4 -2.5 53 1-56 180-237 (253)
101 1q0u_A Bstdead; DEAD protein, 88.2 0.038 1.3E-06 41.9 -2.2 53 1-56 156-209 (219)
102 2db3_A ATP-dependent RNA helic 88.1 2.1 7.3E-05 35.8 8.4 95 66-164 95-209 (434)
103 2i4i_A ATP-dependent RNA helic 87.6 4.1 0.00014 33.3 9.8 70 91-164 102-181 (417)
104 3fmo_B ATP-dependent RNA helic 87.4 1.2 4.1E-05 35.4 6.2 94 66-166 133-243 (300)
105 3foj_A Uncharacterized protein 87.4 0.69 2.4E-05 30.2 4.0 36 89-124 55-90 (100)
106 3ly5_A ATP-dependent RNA helic 87.4 3.2 0.00011 32.1 8.5 72 89-164 125-207 (262)
107 3eme_A Rhodanese-like domain p 86.4 0.67 2.3E-05 30.4 3.5 36 89-124 55-90 (103)
108 3tbk_A RIG-I helicase domain; 86.3 0.98 3.3E-05 38.7 5.4 94 67-164 22-133 (555)
109 4a2p_A RIG-I, retinoic acid in 86.3 1.4 4.6E-05 37.8 6.3 94 67-164 25-136 (556)
110 4a2q_A RIG-I, retinoic acid in 86.2 1.7 5.9E-05 39.5 7.2 94 67-164 266-377 (797)
111 1q0u_A Bstdead; DEAD protein, 86.2 0.64 2.2E-05 34.8 3.8 94 67-164 44-156 (219)
112 3g5j_A Putative ATP/GTP bindin 86.0 0.95 3.3E-05 30.9 4.3 36 91-126 90-126 (134)
113 1wv9_A Rhodanese homolog TT165 85.4 0.93 3.2E-05 29.1 3.7 35 91-125 54-88 (94)
114 3iwh_A Rhodanese-like domain p 84.9 0.9 3.1E-05 30.1 3.5 36 89-124 55-90 (103)
115 3eiq_A Eukaryotic initiation f 84.8 5 0.00017 32.8 8.9 95 67-164 80-189 (414)
116 3flh_A Uncharacterized protein 84.7 1.1 3.8E-05 30.5 4.1 44 81-124 61-107 (124)
117 1s2m_A Putative ATP-dependent 84.6 5 0.00017 32.7 8.8 96 67-166 61-171 (400)
118 2l82_A Designed protein OR32; 84.6 6.9 0.00024 26.1 8.0 49 93-141 5-53 (162)
119 3dkp_A Probable ATP-dependent 84.1 2.5 8.7E-05 32.0 6.4 97 67-166 69-183 (245)
120 1tf5_A Preprotein translocase 83.7 3.5 0.00012 37.8 7.8 75 68-148 100-180 (844)
121 3hix_A ALR3790 protein; rhodan 83.5 1.4 4.7E-05 29.1 4.0 36 89-124 51-87 (106)
122 3dkp_A Probable ATP-dependent 83.0 0.11 3.6E-06 40.0 -2.0 53 1-56 181-238 (245)
123 2fsf_A Preprotein translocase 82.9 3.4 0.00012 37.9 7.4 76 68-149 91-172 (853)
124 2j0s_A ATP-dependent RNA helic 82.6 17 0.00059 29.5 11.3 94 67-164 77-185 (410)
125 1qde_A EIF4A, translation init 82.5 0.075 2.6E-06 40.2 -3.0 53 1-56 161-214 (224)
126 2q5c_A NTRC family transcripti 82.2 13 0.00044 27.5 9.4 117 91-218 5-125 (196)
127 1gmx_A GLPE protein; transfera 81.3 1.9 6.5E-05 28.4 4.1 37 89-125 57-94 (108)
128 2z0m_A 337AA long hypothetical 81.1 6.7 0.00023 30.8 8.1 92 67-164 34-135 (337)
129 1nkt_A Preprotein translocase 80.8 5.2 0.00018 36.9 7.8 75 68-148 128-208 (922)
130 3nhv_A BH2092 protein; alpha-b 79.6 1.8 6.2E-05 30.4 3.7 36 89-124 71-108 (144)
131 1tq1_A AT5G66040, senescence-a 79.5 1.7 6E-05 29.7 3.5 44 82-125 73-118 (129)
132 2fz4_A DNA repair protein RAD2 78.3 11 0.00037 28.6 8.1 68 67-148 111-179 (237)
133 2ipc_A Preprotein translocase 78.0 5.3 0.00018 37.1 6.9 75 69-149 97-177 (997)
134 2fsx_A RV0390, COG0607: rhodan 77.8 2.5 8.5E-05 29.7 4.0 37 89-125 79-116 (148)
135 2k0z_A Uncharacterized protein 77.7 3.4 0.00012 27.3 4.5 37 89-125 55-91 (110)
136 2hhg_A Hypothetical protein RP 77.5 2 6.9E-05 29.6 3.4 36 89-124 85-121 (139)
137 2jtq_A Phage shock protein E; 76.7 3.6 0.00012 25.6 4.1 36 89-125 40-76 (85)
138 4a2w_A RIG-I, retinoic acid in 76.6 2.8 9.4E-05 39.0 4.9 94 67-164 266-377 (936)
139 3d1p_A Putative thiosulfate su 76.5 2.6 8.8E-05 29.1 3.7 37 89-125 90-127 (139)
140 3ilm_A ALR3790 protein; rhodan 76.3 3.1 0.0001 29.1 4.1 36 89-124 55-91 (141)
141 1qxn_A SUD, sulfide dehydrogen 76.2 1.9 6.5E-05 29.9 2.9 36 89-124 81-117 (137)
142 2fwr_A DNA repair protein RAD2 75.3 6.9 0.00024 32.8 6.8 68 67-148 111-179 (472)
143 2ykg_A Probable ATP-dependent 74.2 4.8 0.00016 35.7 5.7 96 67-166 31-144 (696)
144 3i5x_A ATP-dependent RNA helic 74.1 23 0.00079 30.3 9.9 96 66-164 113-232 (563)
145 3sqw_A ATP-dependent RNA helic 72.9 25 0.00086 30.4 9.9 96 66-164 62-181 (579)
146 1vee_A Proline-rich protein fa 70.7 3.3 0.00011 28.4 3.1 36 90-125 74-110 (134)
147 3ipz_A Monothiol glutaredoxin- 70.3 20 0.00068 23.5 8.5 46 90-135 17-68 (109)
148 3zyw_A Glutaredoxin-3; metal b 67.4 24 0.00081 23.2 8.5 45 90-134 15-65 (111)
149 3cnb_A DNA-binding response re 66.7 22 0.00075 23.5 6.8 111 68-184 11-130 (143)
150 4f67_A UPF0176 protein LPG2838 66.1 7.5 0.00026 30.4 4.5 46 80-125 171-217 (265)
151 2oca_A DAR protein, ATP-depend 66.1 19 0.00067 30.4 7.6 91 67-164 131-231 (510)
152 1urh_A 3-mercaptopyruvate sulf 65.7 10 0.00035 29.4 5.4 38 89-126 229-267 (280)
153 3l9o_A ATP-dependent RNA helic 64.8 16 0.00054 34.7 7.2 71 67-148 202-274 (1108)
154 3b6e_A Interferon-induced heli 64.7 3.9 0.00013 30.0 2.6 55 90-148 82-140 (216)
155 4gl2_A Interferon-induced heli 63.5 1.6 5.3E-05 38.9 0.2 70 91-164 57-142 (699)
156 3tg1_B Dual specificity protei 63.3 6.1 0.00021 28.0 3.3 35 90-124 93-136 (158)
157 1uar_A Rhodanese; sulfurtransf 62.5 15 0.00053 28.4 5.9 46 79-124 219-269 (285)
158 2eg4_A Probable thiosulfate su 61.0 8.5 0.00029 29.0 3.9 37 89-125 183-219 (230)
159 3pey_A ATP-dependent RNA helic 59.4 33 0.0011 27.4 7.5 92 67-166 47-153 (395)
160 1c4o_A DNA nucleotide excision 58.3 94 0.0032 27.5 10.7 84 68-153 33-143 (664)
161 3hjh_A Transcription-repair-co 58.3 81 0.0028 26.8 9.9 102 76-178 26-145 (483)
162 1u6t_A SH3 domain-binding glut 57.9 25 0.00085 23.9 5.4 40 97-136 13-52 (121)
163 2wem_A Glutaredoxin-related pr 56.9 41 0.0014 22.4 8.7 52 80-134 12-70 (118)
164 4a4z_A Antiviral helicase SKI2 56.9 27 0.00094 32.7 7.2 72 66-148 56-131 (997)
165 3dmn_A Putative DNA helicase; 56.9 50 0.0017 23.5 9.2 84 69-167 38-123 (174)
166 2wci_A Glutaredoxin-4; redox-a 56.6 45 0.0015 22.9 8.2 56 78-136 25-86 (135)
167 3hcw_A Maltose operon transcri 56.5 54 0.0018 25.1 8.1 65 102-166 149-228 (295)
168 3h11_A CAsp8 and FADD-like apo 56.0 12 0.0004 29.4 4.0 50 89-139 42-91 (272)
169 3fmp_B ATP-dependent RNA helic 55.0 80 0.0027 26.2 9.4 95 65-166 132-243 (479)
170 1e0c_A Rhodanese, sulfurtransf 54.6 17 0.00057 28.0 4.7 36 89-124 222-258 (271)
171 2pju_A Propionate catabolism o 54.6 67 0.0023 24.2 10.0 118 91-218 13-137 (225)
172 2yan_A Glutaredoxin-3; oxidore 54.0 40 0.0014 21.5 7.7 53 91-143 17-75 (105)
173 3i2v_A Adenylyltransferase and 53.7 7.6 0.00026 26.0 2.3 35 91-125 73-114 (127)
174 3h11_B Caspase-8; cell death, 53.2 36 0.0012 26.5 6.5 40 99-139 47-86 (271)
175 3fht_A ATP-dependent RNA helic 52.2 17 0.00057 29.5 4.6 92 66-164 66-174 (412)
176 2h54_A Caspase-1; allosteric s 51.8 53 0.0018 23.8 6.8 39 99-138 63-101 (178)
177 3gx8_A Monothiol glutaredoxin- 51.3 51 0.0018 21.9 8.3 52 80-134 8-68 (121)
178 1wik_A Thioredoxin-like protei 50.8 47 0.0016 21.4 7.6 46 91-136 15-66 (109)
179 3i42_A Response regulator rece 49.9 49 0.0017 21.3 7.6 110 68-185 6-123 (127)
180 3k9c_A Transcriptional regulat 49.9 82 0.0028 23.9 10.6 115 51-166 88-221 (289)
181 4fn4_A Short chain dehydrogena 49.7 83 0.0029 24.1 8.0 59 90-148 31-92 (254)
182 3e4c_A Caspase-1; zymogen, inf 49.3 56 0.0019 25.9 7.1 47 91-138 61-118 (302)
183 1urh_A 3-mercaptopyruvate sulf 49.2 21 0.00072 27.6 4.5 36 89-124 85-122 (280)
184 2wlr_A Putative thiosulfate su 47.8 26 0.00088 29.1 5.1 47 79-125 189-239 (423)
185 3o8b_A HCV NS3 protease/helica 47.4 76 0.0026 28.3 8.2 89 67-167 235-327 (666)
186 3hzu_A Thiosulfate sulfurtrans 47.3 21 0.0007 28.5 4.3 46 79-124 247-295 (318)
187 1qtn_A Caspase-8; apoptosis, d 47.1 70 0.0024 22.8 6.7 40 99-139 53-92 (164)
188 1rif_A DAR protein, DNA helica 47.1 45 0.0015 25.6 6.2 73 69-148 133-212 (282)
189 3cs3_A Sugar-binding transcrip 47.0 89 0.003 23.5 11.5 115 51-166 80-213 (277)
190 2p6r_A Afuhel308 helicase; pro 46.8 19 0.00065 32.0 4.4 92 67-165 43-145 (702)
191 2j6p_A SB(V)-AS(V) reductase; 46.7 27 0.00091 24.3 4.4 47 78-125 56-111 (152)
192 2lnd_A De novo designed protei 46.1 52 0.0018 20.5 7.5 58 77-136 39-98 (112)
193 2ouc_A Dual specificity protei 46.1 12 0.0004 25.4 2.3 35 90-124 83-126 (142)
194 3aay_A Putative thiosulfate su 45.8 43 0.0015 25.7 5.9 36 89-124 76-113 (277)
195 1e0c_A Rhodanese, sulfurtransf 45.8 32 0.0011 26.4 5.1 36 89-124 80-117 (271)
196 3gr1_A Protein PRGH; type III 45.3 98 0.0033 23.5 7.8 60 77-139 4-74 (227)
197 2dko_A Caspase-3; low barrier 45.3 58 0.002 22.7 5.9 40 99-139 39-78 (146)
198 2zj8_A DNA helicase, putative 44.8 19 0.00064 32.2 4.0 95 65-166 40-146 (720)
199 3p45_A Caspase-6; protease, hu 44.7 88 0.003 22.7 8.3 50 89-139 43-106 (179)
200 3ics_A Coenzyme A-disulfide re 44.6 19 0.00066 31.2 4.0 43 83-125 533-576 (588)
201 3hzu_A Thiosulfate sulfurtrans 44.4 40 0.0014 26.7 5.6 45 80-124 98-147 (318)
202 3ntd_A FAD-dependent pyridine 44.4 20 0.00068 30.8 4.0 37 89-125 523-559 (565)
203 3aay_A Putative thiosulfate su 44.3 44 0.0015 25.6 5.7 36 89-124 225-262 (277)
204 3kht_A Response regulator; PSI 44.2 66 0.0023 21.2 9.4 78 68-148 8-89 (144)
205 1uar_A Rhodanese; sulfurtransf 43.7 32 0.0011 26.6 4.8 36 89-124 78-115 (285)
206 2d7d_A Uvrabc system protein B 42.8 1.7E+02 0.0057 25.9 9.8 108 68-177 37-175 (661)
207 2va8_A SSO2462, SKI2-type heli 42.3 34 0.0011 30.5 5.3 92 66-164 48-151 (715)
208 1pyo_A Caspase-2; apoptosis, c 41.5 94 0.0032 22.2 7.1 39 99-138 56-94 (167)
209 2fp3_A Caspase NC; apoptosis, 41.5 64 0.0022 25.7 6.3 49 89-138 60-120 (316)
210 3h5t_A Transcriptional regulat 41.3 1.3E+02 0.0044 23.7 8.9 66 101-166 223-304 (366)
211 2nn3_C Caspase-1; cysteine pro 40.9 81 0.0028 25.1 6.8 40 99-139 82-121 (310)
212 2xgj_A ATP-dependent RNA helic 40.8 59 0.002 30.5 6.8 71 67-148 104-176 (1010)
213 1t1v_A SH3BGRL3, SH3 domain-bi 40.7 64 0.0022 20.0 5.3 35 102-136 20-54 (93)
214 1m72_A Caspase-1; caspase, cys 40.5 81 0.0028 24.5 6.6 40 99-139 54-93 (272)
215 3grc_A Sensor protein, kinase; 39.9 77 0.0026 20.7 9.6 108 68-183 9-126 (140)
216 1rhs_A Sulfur-substituted rhod 39.8 19 0.00065 28.2 2.9 37 89-125 239-276 (296)
217 3ijp_A DHPR, dihydrodipicolina 39.8 1.2E+02 0.004 23.9 7.5 63 91-156 89-151 (288)
218 3olh_A MST, 3-mercaptopyruvate 39.7 18 0.0006 28.6 2.7 47 79-125 240-290 (302)
219 2qv0_A Protein MRKE; structura 39.6 78 0.0027 20.7 7.3 108 68-181 12-124 (143)
220 3gr0_A Protein PRGH; type III 39.6 97 0.0033 22.9 6.5 47 90-139 26-74 (197)
221 3tla_A MCCF; serine protease, 39.1 1.2E+02 0.0041 24.8 7.7 59 89-148 42-117 (371)
222 3fho_A ATP-dependent RNA helic 38.9 46 0.0016 28.2 5.4 91 66-164 160-265 (508)
223 3heb_A Response regulator rece 38.3 87 0.003 20.8 7.9 112 68-182 7-133 (152)
224 2wlr_A Putative thiosulfate su 38.0 47 0.0016 27.5 5.2 45 80-124 345-393 (423)
225 1yt8_A Thiosulfate sulfurtrans 37.3 33 0.0011 29.5 4.3 36 89-124 321-357 (539)
226 2eg4_A Probable thiosulfate su 37.2 48 0.0017 24.6 4.8 33 90-123 61-95 (230)
227 3sr3_A Microcin immunity prote 37.2 1.3E+02 0.0044 24.2 7.5 59 89-148 12-87 (336)
228 4e7p_A Response regulator; DNA 37.1 91 0.0031 20.7 9.7 112 67-184 22-140 (150)
229 3od5_A Caspase-6; caspase doma 36.9 1.1E+02 0.0039 23.7 7.0 49 90-139 21-83 (278)
230 2lci_A Protein OR36; structura 36.8 83 0.0028 20.2 10.1 74 70-143 31-104 (134)
231 3klo_A Transcriptional regulat 36.7 1.2E+02 0.0041 22.0 7.1 114 67-185 9-130 (225)
232 3qk7_A Transcriptional regulat 36.0 1.4E+02 0.0048 22.6 9.6 115 51-166 88-223 (294)
233 4e5s_A MCCFLIKE protein (BA_56 36.0 1.5E+02 0.005 23.8 7.7 58 90-148 12-86 (331)
234 4f3y_A DHPR, dihydrodipicolina 35.9 1.4E+02 0.0048 23.1 7.4 62 92-156 75-136 (272)
235 2o20_A Catabolite control prot 35.2 1.6E+02 0.0053 22.9 9.5 64 104-167 200-276 (332)
236 4h1h_A LMO1638 protein; MCCF-l 35.0 1.5E+02 0.0053 23.5 7.7 59 89-148 11-86 (327)
237 1vlj_A NADH-dependent butanol 34.9 1.7E+02 0.0058 24.0 8.1 44 103-146 61-107 (407)
238 2j32_A Caspase-3; Pro-caspase3 34.5 1.1E+02 0.0036 23.4 6.4 40 99-139 39-78 (250)
239 2ct6_A SH3 domain-binding glut 34.5 77 0.0026 20.6 4.9 45 92-136 9-60 (111)
240 3dbi_A Sugar-binding transcrip 33.5 1.7E+02 0.0057 22.7 8.8 64 103-166 200-278 (338)
241 1p9l_A Dihydrodipicolinate red 33.4 1.6E+02 0.0054 22.4 7.5 57 92-148 47-104 (245)
242 1t3k_A Arath CDC25, dual-speci 32.5 38 0.0013 23.5 3.3 38 89-126 84-131 (152)
243 3kke_A LACI family transcripti 32.3 1.7E+02 0.0057 22.3 10.1 114 51-166 94-233 (303)
244 3s5u_A Putative uncharacterize 31.6 1.3E+02 0.0044 22.6 6.3 47 77-123 148-199 (220)
245 3hjh_A Transcription-repair-co 31.6 30 0.001 29.5 3.0 76 78-166 371-446 (483)
246 3sir_A Caspase; hydrolase; 2.6 31.4 72 0.0025 24.6 4.9 40 99-139 42-81 (259)
247 1okg_A Possible 3-mercaptopyru 31.3 34 0.0012 28.0 3.2 37 90-126 246-283 (373)
248 3gyb_A Transcriptional regulat 31.0 1.6E+02 0.0056 21.8 7.9 115 51-166 79-212 (280)
249 1k68_A Phytochrome response re 30.4 1.1E+02 0.0037 19.6 8.2 66 70-138 7-79 (140)
250 1k66_A Phytochrome response re 30.1 1.2E+02 0.004 19.8 7.7 66 70-138 11-86 (149)
251 3eul_A Possible nitrate/nitrit 29.9 1.2E+02 0.0042 20.0 8.4 112 66-183 16-134 (152)
252 2j48_A Two-component sensor ki 29.8 1E+02 0.0034 19.0 7.0 108 70-183 6-117 (119)
253 2ql9_A Caspase-7; cysteine pro 29.8 1.1E+02 0.0037 22.1 5.3 41 99-140 67-107 (173)
254 1okg_A Possible 3-mercaptopyru 29.2 73 0.0025 26.0 4.9 37 89-125 94-132 (373)
255 3jvd_A Transcriptional regulat 29.1 2E+02 0.0069 22.3 10.5 87 79-166 163-267 (333)
256 1z63_A Helicase of the SNF2/RA 28.9 80 0.0027 26.4 5.2 51 88-148 84-136 (500)
257 1nw9_B Caspase 9, apoptosis-re 28.8 1.2E+02 0.0041 23.5 5.9 39 100-139 45-83 (277)
258 3sxu_A DNA polymerase III subu 28.8 82 0.0028 22.1 4.5 81 77-169 24-106 (150)
259 1rhs_A Sulfur-substituted rhod 28.7 69 0.0023 24.9 4.5 36 89-124 91-130 (296)
260 4ehd_A Caspase-3; caspase, apo 28.3 1.4E+02 0.0048 23.2 6.2 40 99-139 67-106 (277)
261 1yt8_A Thiosulfate sulfurtrans 28.3 81 0.0028 27.0 5.2 36 89-124 62-98 (539)
262 2xw6_A MGS, methylglyoxal synt 28.1 57 0.002 22.5 3.4 48 98-149 36-83 (134)
263 3c3k_A Alanine racemase; struc 28.1 1.8E+02 0.006 21.9 6.8 88 79-166 113-220 (285)
264 2yvq_A Carbamoyl-phosphate syn 28.0 74 0.0025 21.9 4.1 41 108-149 61-105 (143)
265 3qhq_A CSN2, SAG0897 family cr 27.8 1.3E+02 0.0044 22.8 5.6 47 77-123 148-199 (229)
266 3tp9_A Beta-lactamase and rhod 27.7 43 0.0015 28.1 3.3 37 89-125 426-463 (474)
267 3ilh_A Two component response 27.6 1.3E+02 0.0044 19.5 10.6 114 67-185 11-140 (146)
268 2qu7_A Putative transcriptiona 27.3 2E+02 0.0067 21.5 9.6 89 79-167 111-224 (288)
269 3mwd_B ATP-citrate synthase; A 27.0 1.4E+02 0.0047 24.1 6.0 62 81-142 70-133 (334)
270 2qsj_A DNA-binding response re 27.0 1.4E+02 0.0048 19.7 9.4 107 68-184 6-124 (154)
271 3h1t_A Type I site-specific re 26.7 1.1E+02 0.0038 26.3 5.9 71 67-149 201-283 (590)
272 1vp8_A Hypothetical protein AF 26.0 65 0.0022 23.8 3.5 70 81-150 35-108 (201)
273 1b93_A Protein (methylglyoxal 25.2 1.8E+02 0.0062 20.4 6.2 41 108-149 50-91 (152)
274 1vm6_A DHPR, dihydrodipicolina 25.2 2.2E+02 0.0076 21.5 7.1 62 91-155 54-115 (228)
275 3k4h_A Putative transcriptiona 25.1 2.1E+02 0.0073 21.3 8.9 116 51-167 92-229 (292)
276 2fep_A Catabolite control prot 25.1 2.2E+02 0.0075 21.4 9.3 88 79-166 122-231 (289)
277 2yv1_A Succinyl-COA ligase [AD 24.7 1.8E+02 0.0062 22.7 6.3 53 89-142 70-123 (294)
278 3mwy_W Chromo domain-containin 24.5 1.3E+02 0.0046 27.1 6.1 60 89-149 285-354 (800)
279 3qmx_A Glutaredoxin A, glutare 24.5 1.4E+02 0.0047 18.8 7.4 46 90-135 15-61 (99)
280 1c25_A CDC25A; hydrolase, cell 24.3 46 0.0016 23.1 2.5 36 90-125 87-136 (161)
281 1z3i_X Similar to RAD54-like; 24.1 3E+02 0.01 24.1 8.2 56 91-148 115-178 (644)
282 2hsg_A Glucose-resistance amyl 24.1 2.1E+02 0.0073 22.0 6.7 63 104-166 198-275 (332)
283 3lua_A Response regulator rece 23.7 1.5E+02 0.0053 19.1 8.9 110 68-184 7-127 (140)
284 4g81_D Putative hexonate dehyd 23.7 2.4E+02 0.0083 21.4 7.7 59 90-148 33-94 (255)
285 3bbl_A Regulatory protein of L 23.6 2.3E+02 0.008 21.2 9.4 65 103-167 144-225 (287)
286 3cz5_A Two-component response 23.4 1.6E+02 0.0056 19.4 10.1 111 68-184 8-125 (153)
287 1f1j_A Caspase-7 protease; cas 23.4 1.2E+02 0.0041 24.0 5.0 40 99-139 92-131 (305)
288 3clk_A Transcription regulator 22.7 2.4E+02 0.0083 21.1 9.4 88 79-166 114-221 (290)
289 1zl0_A Hypothetical protein PA 22.6 2.9E+02 0.0098 21.8 7.5 59 90-148 17-88 (311)
290 2yv2_A Succinyl-COA synthetase 22.3 2.8E+02 0.0096 21.6 7.1 52 90-142 72-124 (297)
291 2nu8_A Succinyl-COA ligase [AD 21.8 2.3E+02 0.008 21.9 6.4 53 89-142 64-117 (288)
292 4b3f_X DNA-binding protein smu 21.7 2.3E+02 0.0077 24.8 6.9 48 73-120 214-263 (646)
293 3cg4_A Response regulator rece 21.7 1.7E+02 0.0058 18.9 10.6 110 68-182 10-125 (142)
294 3dmq_A RNA polymerase-associat 21.7 57 0.0019 30.4 3.1 74 73-149 179-257 (968)
295 3n53_A Response regulator rece 20.9 1.8E+02 0.0061 18.8 10.4 107 68-183 6-121 (140)
296 3rc3_A ATP-dependent RNA helic 20.9 4E+02 0.014 23.7 8.3 58 67-126 158-215 (677)
297 2wul_A Glutaredoxin related pr 20.8 1.9E+02 0.0066 19.2 8.7 55 79-137 11-72 (118)
298 1qb0_A Protein (M-phase induce 20.6 88 0.003 23.0 3.5 35 90-124 109-157 (211)
299 2lpm_A Two-component response 20.5 59 0.002 21.8 2.3 111 68-183 11-121 (123)
300 1jq5_A Glycerol dehydrogenase; 20.3 3.3E+02 0.011 21.7 8.1 50 98-148 70-119 (370)
301 3iwt_A 178AA long hypothetical 20.2 2.3E+02 0.008 19.9 8.2 56 100-155 39-96 (178)
302 3olh_A MST, 3-mercaptopyruvate 20.2 1.2E+02 0.0042 23.6 4.5 36 89-124 106-145 (302)
No 1
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=100.00 E-value=3.2e-34 Score=215.40 Aligned_cols=163 Identities=65% Similarity=1.078 Sum_probs=149.4
Q ss_pred cceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 62 TRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 62 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
+++.|+|..++.++.|.+.|.+++...+++++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 46889999998777799999999998888999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchh
Q psy1621 142 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVA 221 (224)
Q Consensus 142 ~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (224)
+|||||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.++.++.+.+...+..+++.++.+++++|.++.
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccC
Q psy1621 222 DLI 224 (224)
Q Consensus 222 ~l~ 224 (224)
+++
T Consensus 162 ~~~ 164 (165)
T 1fuk_A 162 TLL 164 (165)
T ss_dssp TTT
T ss_pred hhc
Confidence 664
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.5e-34 Score=245.71 Aligned_cols=221 Identities=56% Similarity=0.876 Sum_probs=188.7
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhhc----cCcccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLIV----GDSMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~----~~~~~~i~~~~~~~~~~~ 75 (224)
+||++.+..+........++.. +...|.+++|||++.++.... ...+..|..+. ......+.+.+..+...+
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT---NKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 261 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTG---GGTCSSCEEECCCGGGCSCTTEEEEEEEESSTT
T ss_pred EccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHH---HHHcCCCEEEEecCccccCCCceEEEEEeCcHH
Confidence 4888877655433333333322 356789999999998764332 34444444332 234567788888888777
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
.|...+.+++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 262 ~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 341 (410)
T 2j0s_A 262 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341 (410)
T ss_dssp HHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCC
T ss_pred hHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCC
Confidence 79999999998777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 224 (224)
+|++++||+++.|++...|.||+||+||.|+.|.+++++.+.+...++.++++++..++++|.+..+++
T Consensus 342 i~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (410)
T 2j0s_A 342 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410 (410)
T ss_dssp CTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTTTC
T ss_pred cccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999887764
No 3
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=100.00 E-value=1.4e-33 Score=211.49 Aligned_cols=158 Identities=41% Similarity=0.664 Sum_probs=148.7
Q ss_pred CcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 59 DSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 59 ~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
....++.+++..++..+ |...|.+++....++++||||++++.++.+++.|.+.++.+..+||++++.+|..++++|++
T Consensus 5 ~~~~~i~~~~~~~~~~~-K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREEN-KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCGGG-HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECChHH-HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 44567899999888655 99999999988778899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q psy1621 139 GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMP 217 (224)
Q Consensus 139 ~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (224)
|+.+|||||+++++|+|+|++++||+++.|+++..|.||+||+||.|+.|.++.++...+...++++++.++.++++++
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998887654
No 4
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3e-34 Score=246.28 Aligned_cols=218 Identities=26% Similarity=0.439 Sum_probs=181.3
Q ss_pred CcccceeecCCCCccccccc---cCccCcccccccccccHhhhhhhhhhHHHhhhhhhh----ccCcccceeEEEEEecC
Q psy1621 1 MEELQMVCYPPGHGACADVH---VNVGARIGAGFNADINVEACADVDVNAAELRRRVLI----VGDSMTRIRQFYIYIER 73 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i----~~~~~~~i~~~~~~~~~ 73 (224)
+||++.++...-..+...++ ..+..+|++++|||+++++.. +....+..+..+ .......+.+.+..+..
T Consensus 209 lDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~---~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~ 285 (434)
T 2db3_A 209 LDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQR---MAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK 285 (434)
T ss_dssp EETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHH---HHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG
T ss_pred EccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHH---HHHHhccCCEEEEeccccccccccceEEEEeCc
Confidence 48999877664333333333 235678999999999988643 333444444433 23345677888887776
Q ss_pred CccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 74 EDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
.. |...|.+++..... ++||||++++.++.+++.|.+.++.+..+||++++.+|..++++|++|+.+|||||+++++|
T Consensus 286 ~~-k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rG 363 (434)
T 2db3_A 286 YA-KRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 363 (434)
T ss_dssp GG-HHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSS
T ss_pred HH-HHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCC
Confidence 55 99999999887654 49999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEec-cccHHHHHHHHHHhccccccCCcchhcc
Q psy1621 154 IDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVT-AEDKRTLKDTEQFYNTRIEEMPMNVADL 223 (224)
Q Consensus 154 vdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 223 (224)
+|+|++++||+||.|++..+|.||+||+||.|+.|.++.|++ ..+......+.+.++....++|..+.++
T Consensus 364 lDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 364 LDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp CCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred CCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 999999999999999999999999999999999999999998 4578889999999999999999887653
No 5
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-33 Score=213.70 Aligned_cols=159 Identities=33% Similarity=0.679 Sum_probs=147.1
Q ss_pred ccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCC
Q psy1621 61 MTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGS 140 (224)
Q Consensus 61 ~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~ 140 (224)
..++.|+|..++..+ |...|.++++...++++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+
T Consensus 3 ~~~i~q~~~~~~~~~-K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNE-KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGG-HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHH-HHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 467889999888755 9999999999888889999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCcc
Q psy1621 141 SRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAE-DKRTLKDTEQFYNTRIEEMPMN 219 (224)
Q Consensus 141 ~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 219 (224)
.+|||||+++++|+|+|++++||++|.|+++..|.||+||+||.|+.|.++++++.. +...++.+++.++.+++++|.+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 999999999999999999999999999999999999999999999999999999875 6788999999999999999876
Q ss_pred h
Q psy1621 220 V 220 (224)
Q Consensus 220 ~ 220 (224)
+
T Consensus 162 ~ 162 (172)
T 1t5i_A 162 I 162 (172)
T ss_dssp -
T ss_pred h
Confidence 5
No 6
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=213.07 Aligned_cols=161 Identities=42% Similarity=0.858 Sum_probs=149.0
Q ss_pred cccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 60 SMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 60 ~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+.+++.|+|..++..+.|...|.+++....++++||||+++++++.+++.|.+.++.+..+||++++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 45689999999988777999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCcccCCCCCCCCEEEEeCCC------CChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhcccc
Q psy1621 140 SSRVLITTDLLARGIDVQQVSLVINYDLP------SNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRI 213 (224)
Q Consensus 140 ~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p------~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (224)
+.+|||||+++++|+|+|++++||++|.| .+..+|.||+||+||.|+.|.++.++...+...+..+++.++..+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred ccCCcch
Q psy1621 214 EEMPMNV 220 (224)
Q Consensus 214 ~~~~~~~ 220 (224)
.+++...
T Consensus 164 ~~~~~~~ 170 (175)
T 2rb4_A 164 KQLNAED 170 (175)
T ss_dssp EEECSSC
T ss_pred cccCCch
Confidence 8887654
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=244.99 Aligned_cols=221 Identities=65% Similarity=0.952 Sum_probs=170.9
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhh----ccCcccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLI----VGDSMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i----~~~~~~~i~~~~~~~~~~~ 75 (224)
+||++.+..+........++.. +...|.+++|||++..+.... ...+..+..+ .......+.+.+..+...+
T Consensus 189 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (414)
T 3eiq_A 189 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVT---KKFMRDPIRILVKKEELTLEGIRQFYINVEREE 265 (414)
T ss_dssp ECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHH---TTTCSSCEEECCCCCCCCTTSCCEEEEECSSST
T ss_pred EECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHH---HHHcCCCEEEEecCCccCCCCceEEEEEeChHH
Confidence 4888887665544444444433 457889999999988764322 2444444433 2234556778888888877
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
.|...+.+++.....+++||||++++.++.+++.|.+.++.+..+||++++++|..+++.|++|+.+|||||+++++|+|
T Consensus 266 ~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 345 (414)
T 3eiq_A 266 WKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 345 (414)
T ss_dssp THHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CC
T ss_pred hHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCC
Confidence 79999999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 224 (224)
+|++++||+++.|++...|.||+||+||.|+.|.|++++++.+...++.++++++.++.++|.++.+|+
T Consensus 346 ip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (414)
T 3eiq_A 346 VQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 414 (414)
T ss_dssp GGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC------
T ss_pred ccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999998875
No 8
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=100.00 E-value=6.9e-33 Score=211.84 Aligned_cols=163 Identities=33% Similarity=0.580 Sum_probs=138.3
Q ss_pred CcccceeEEEEEecCCccHHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 59 DSMTRIRQFYIYIEREDWKFDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 59 ~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
...+++.+.+..++..+ |...|.+++... ++.++||||++++.++.+++.|...++.+..+||++++.+|..++++|+
T Consensus 15 ~~~~~i~q~~~~v~~~~-K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 15 STSENITQKVVWVEESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp -CCTTEEEEEEECCGGG-HHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCceEEEEEeCcHH-HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 34568999999988765 999999999876 5789999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q psy1621 138 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMP 217 (224)
Q Consensus 138 ~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (224)
+|+.+|||||+++++|+|+|++++||++|.|+++..|.||+||+||.|+.|.+++++++.+...++.+++.++....++|
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred cchhc
Q psy1621 218 MNVAD 222 (224)
Q Consensus 218 ~~~~~ 222 (224)
..+.+
T Consensus 174 ~~l~~ 178 (185)
T 2jgn_A 174 SWLEN 178 (185)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.9e-33 Score=236.10 Aligned_cols=218 Identities=31% Similarity=0.535 Sum_probs=178.8
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhh---ccCcccceeEEEEEecCCcc
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLI---VGDSMTRIRQFYIYIEREDW 76 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i---~~~~~~~i~~~~~~~~~~~~ 76 (224)
+||++.+...........++.. +...+.+++|||++..+...+. ..+..+..+ .......+.+++..+....
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 244 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMV---KHLHKPYEINLMEELTLKGITQYYAFVEERQ- 244 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHH---HHCSSCEEESCCSSCBCTTEEEEEEECCGGG-
T ss_pred EeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHH---HHcCCCeEEEeccccccCCceeEEEEechhh-
Confidence 4777765543222222222221 3467899999999887643322 334444322 1223456667777666544
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
|...+..++.....+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+
T Consensus 245 k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 324 (400)
T 1s2m_A 245 KLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDI 324 (400)
T ss_dssp HHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCC
T ss_pred HHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCc
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q psy1621 157 QQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVAD 222 (224)
Q Consensus 157 ~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (224)
|++++||+++.|++...|.||+||+||.|+.|.|+++++..+...++++++.++.+++++|.++.+
T Consensus 325 p~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 325 QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp TTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred cCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999987654
No 10
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=210.56 Aligned_cols=163 Identities=31% Similarity=0.521 Sum_probs=145.6
Q ss_pred CcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 59 DSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 59 ~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
....++.+.+..++.++ |...|.+++.... +++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++
T Consensus 25 ~~~~~i~q~~~~~~~~~-K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~ 102 (191)
T 2p6n_A 25 AASLDVIQEVEYVKEEA-KMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE 102 (191)
T ss_dssp ---CCSEEEEEECCGGG-HHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcCceEEEEEcChHH-HHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc
Confidence 34568889998887665 9999999998754 689999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCC
Q psy1621 139 GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAE-DKRTLKDTEQFYNTRIEEMP 217 (224)
Q Consensus 139 ~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (224)
|+.+|||||+++++|+|+|++++||++|+|+++..|.||+||+||.|+.|.+++|++.. +...++.+++.++.....+|
T Consensus 103 g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p 182 (191)
T 2p6n_A 103 GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 182 (191)
T ss_dssp TSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCC
T ss_pred CCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999876 78889999999988888888
Q ss_pred cchhcc
Q psy1621 218 MNVADL 223 (224)
Q Consensus 218 ~~~~~l 223 (224)
..+.++
T Consensus 183 ~~l~~~ 188 (191)
T 2p6n_A 183 PVLQVL 188 (191)
T ss_dssp HHHHST
T ss_pred HHHHhh
Confidence 777654
No 11
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=234.65 Aligned_cols=218 Identities=29% Similarity=0.462 Sum_probs=177.2
Q ss_pred CcccceeecCCCCcccccc-----ccCccCcccccccccccHhhhhhhhhhHHHhhhhhhh----ccCcccceeEEEEEe
Q psy1621 1 MEELQMVCYPPGHGACADV-----HVNVGARIGAGFNADINVEACADVDVNAAELRRRVLI----VGDSMTRIRQFYIYI 71 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i----~~~~~~~i~~~~~~~ 71 (224)
+||++.+..+.-......+ +++....|.+++|||+++.+.. .....+..+..+ ......++.+.+..+
T Consensus 181 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 257 (417)
T 2i4i_A 181 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQM---LARDFLDEYIFLAVGRVGSTSENITQKVVWV 257 (417)
T ss_dssp ESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHH---HHHHHCSSCEEEEEC----CCSSEEEEEEEC
T ss_pred EEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHH---HHHHHcCCCEEEEeCCCCCCccCceEEEEEe
Confidence 4888887765422222222 2334578899999999887542 222444444332 223455677777777
Q ss_pred cCCccHHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q psy1621 72 EREDWKFDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLL 150 (224)
Q Consensus 72 ~~~~~k~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~ 150 (224)
...+ |...+.+++... .++++||||++++.++.+++.|.+.++.+..+||++++++|..++++|++|+.+|||||+++
T Consensus 258 ~~~~-~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 336 (417)
T 2i4i_A 258 EESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 336 (417)
T ss_dssp CGGG-HHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHH
T ss_pred ccHh-HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChh
Confidence 6655 999999999876 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q psy1621 151 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVAD 222 (224)
Q Consensus 151 ~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (224)
++|+|+|++++||+++.|++...|.||+||+||.|+.|.+++++++.+...++.+.+.+.....++|..+.+
T Consensus 337 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 408 (417)
T 2i4i_A 337 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLEN 408 (417)
T ss_dssp HTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHH
T ss_pred hcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998877777766554
No 12
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=100.00 E-value=2.2e-31 Score=207.73 Aligned_cols=154 Identities=31% Similarity=0.548 Sum_probs=141.8
Q ss_pred eeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceE
Q psy1621 64 IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRV 143 (224)
Q Consensus 64 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~i 143 (224)
+.+.+..++... |++.|.+++....++++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|
T Consensus 6 ~~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRG-RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTS-HHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHH-HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 345555665554 9999999998877899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q psy1621 144 LITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPM 218 (224)
Q Consensus 144 lv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (224)
||||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.|+.+++..+...++.+++.++..+..++.
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCC
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988887664
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=1.2e-31 Score=223.83 Aligned_cols=212 Identities=28% Similarity=0.483 Sum_probs=177.0
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHH
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFD 79 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~ 79 (224)
+||++.+..+.........+.. +...+.+++|||++++.... ....+..+..+.......+.+.+..+...+ |..
T Consensus 153 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 228 (367)
T 1hv8_A 153 LDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNL---AKKYMGDYSFIKAKINANIEQSYVEVNENE-RFE 228 (367)
T ss_dssp EETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHH---HHHHCCSEEEEECCSSSSSEEEEEECCGGG-HHH
T ss_pred EeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHH---HHHHcCCCeEEEecCCCCceEEEEEeChHH-HHH
Confidence 4888887655433333333322 35678899999998875432 224444444444444556777777776555 999
Q ss_pred HHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCC
Q psy1621 80 TLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQV 159 (224)
Q Consensus 80 ~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~ 159 (224)
.+.+++.. .+.++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 229 ~l~~~l~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~ 307 (367)
T 1hv8_A 229 ALCRLLKN-KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDL 307 (367)
T ss_dssp HHHHHHCS-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCC
T ss_pred HHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccC
Confidence 99888874 56789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q psy1621 160 SLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMP 217 (224)
Q Consensus 160 ~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (224)
++||+++.|+|..+|.||+||+||.|+.|.+++++++.+...+..+++.++..+++++
T Consensus 308 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 308 NCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp SEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred CEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 9999999999999999999999999999999999999999999999999999988765
No 14
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.98 E-value=7.6e-32 Score=228.64 Aligned_cols=217 Identities=34% Similarity=0.634 Sum_probs=177.9
Q ss_pred CcccceeecCCCCcccccc-cc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhh----ccCcccceeEEEEEecCC
Q psy1621 1 MEELQMVCYPPGHGACADV-HV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLI----VGDSMTRIRQFYIYIERE 74 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i----~~~~~~~i~~~~~~~~~~ 74 (224)
+||++.+....++...... +. .+...|.+++|||+++.+.. .....+..+..+ .......+.+.+..+...
T Consensus 174 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 174 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWK---FAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHH---HHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH
T ss_pred EeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHH---HHHHhcCCCeEEeeccccccccCceEEEEEcCCh
Confidence 4888877764444433332 22 24567899999999987643 333444444433 223456777888888877
Q ss_pred ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 75 DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 75 ~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
+.|...+.+++....++++||||++++.++.+++.|.+.+..+..+||++++++|..+++.|++|+.+|||||+++++|+
T Consensus 251 ~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 330 (412)
T 3fht_A 251 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 330 (412)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSC
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCC
Confidence 77999999999887788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCC------ChhHHHHHHhhccCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCcch
Q psy1621 155 DVQQVSLVINYDLPS------NRENYIHRIGRGGRFGRKGVAINFVTAE-DKRTLKDTEQFYNTRIEEMPMNV 220 (224)
Q Consensus 155 di~~~~~vi~~~~p~------s~~~~~q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 220 (224)
|+|++++||+++.|+ +..+|.||+||+||.|+.|.++++++.. +...++.+++.++..+.+++.+.
T Consensus 331 dip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 331 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp CCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred CccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 999999999999995 6789999999999999999999999876 58899999999999998887643
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=1.5e-31 Score=225.58 Aligned_cols=216 Identities=27% Similarity=0.506 Sum_probs=175.3
Q ss_pred CcccceeecCCCCcc-cccccc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhhcc-----CcccceeEEEEEecC
Q psy1621 1 MEELQMVCYPPGHGA-CADVHV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLIVG-----DSMTRIRQFYIYIER 73 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~-----~~~~~i~~~~~~~~~ 73 (224)
+||++.+..+.+... ....+. .+...|.+++|||+++.... .....+..+..+.. .....+.+.+..+..
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRP---VCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 234 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHH---HHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG
T ss_pred EeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHH---HHHHHcCCCeEEEecCccccCcccceEEEEEcCc
Confidence 478877654322221 112222 23567899999999886542 22244444443321 123456667776665
Q ss_pred CccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 74 EDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
.. |...+.+++....++++||||++++.++.+++.|.+.++.+..+||+++.++|..+++.|++|+.+|||||+++++|
T Consensus 235 ~~-~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 313 (391)
T 1xti_A 235 NE-KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 313 (391)
T ss_dssp GG-HHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSC
T ss_pred hh-HHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcC
Confidence 54 99999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCcch
Q psy1621 154 IDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAE-DKRTLKDTEQFYNTRIEEMPMNV 220 (224)
Q Consensus 154 vdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 220 (224)
+|+|++++||+++.|++...|.||+||+||.|+.|.+++++++. +...++.+++.++.++.++|.++
T Consensus 314 idi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 1xti_A 314 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381 (391)
T ss_dssp BCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCC
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccc
Confidence 99999999999999999999999999999999999999999875 66778999999999999998654
No 16
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=1.5e-30 Score=212.39 Aligned_cols=154 Identities=31% Similarity=0.552 Sum_probs=141.0
Q ss_pred eeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceE
Q psy1621 64 IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRV 143 (224)
Q Consensus 64 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~i 143 (224)
+.++++.+...+ |++.|.+++....++++||||+++++++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~~~-K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRG-RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSS-HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHH-HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 567888887765 9999999998777899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q psy1621 144 LITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPM 218 (224)
Q Consensus 144 lv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (224)
||||+++++|+|+|++++||+++.|++..+|.||+||+||.|+.|.|+.+++..+...++.+++.++..+..++.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877664
No 17
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=6.1e-31 Score=221.63 Aligned_cols=215 Identities=34% Similarity=0.561 Sum_probs=174.3
Q ss_pred CcccceeecCCCCccccc-ccc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhh----ccCcccceeEEEEEecCC
Q psy1621 1 MEELQMVCYPPGHGACAD-VHV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLI----VGDSMTRIRQFYIYIERE 74 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i----~~~~~~~i~~~~~~~~~~ 74 (224)
+||++.+....+...... ... .+...|.+++|||+++.+.... ...+..+..+ .......+.+.+..+...
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYA---KKIVPNANTLELQTNEVNVDAIKQLYMDCKNE 227 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHH---HHHSCSCEEECCCGGGCSCTTEEEEEEECSSH
T ss_pred EEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHH---HHhCCCCeEEEccccccccccccEEEEEcCch
Confidence 478887766443332222 222 2356789999999988754322 2333333222 223345677777777777
Q ss_pred ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 75 DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 75 ~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
..|...+..++....++++||||++++.++.+++.|.+.+..+..+||+++.++|..+++.|++|+.+|||||+++++|+
T Consensus 228 ~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 307 (395)
T 3pey_A 228 ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGI 307 (395)
T ss_dssp HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCC
Confidence 77999999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCC------ChhHHHHHHhhccCCCCcceEEEEecc-ccHHHHHHHHHHhc-cccccCCc
Q psy1621 155 DVQQVSLVINYDLPS------NRENYIHRIGRGGRFGRKGVAINFVTA-EDKRTLKDTEQFYN-TRIEEMPM 218 (224)
Q Consensus 155 di~~~~~vi~~~~p~------s~~~~~q~~GR~~R~g~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 218 (224)
|+|++++||+++.|+ +..+|.||+||+||.|+.|.+++++.. ++...++.+++.++ .++..++.
T Consensus 308 dip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 308 DIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp CCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred CcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 999999999999999 999999999999999999999999986 56778888888888 77766664
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=4.9e-30 Score=224.64 Aligned_cols=203 Identities=20% Similarity=0.302 Sum_probs=156.1
Q ss_pred CcccceeecCCCCc-----cccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhcc-CcccceeEEEEEecCC
Q psy1621 1 MEELQMVCYPPGHG-----ACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVG-DSMTRIRQFYIYIERE 74 (224)
Q Consensus 1 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~-~~~~~i~~~~~~~~~~ 74 (224)
+||++.+..+.... ............+.+++|||.++.+...+.. ...+..+..... ...+++ .+......
T Consensus 145 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~-~l~~~~~~~~~~~~~r~~l--~~~v~~~~ 221 (523)
T 1oyw_A 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR-LLGLNDPLIQISSFDRPNI--RYMLMEKF 221 (523)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHH-HHTCCSCEEEECCCCCTTE--EEEEEECS
T ss_pred EeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHH-HhCCCCCeEEeCCCCCCce--EEEEEeCC
Confidence 58999886554211 1111111223477899999998875432221 011223332222 222333 33333333
Q ss_pred ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 75 DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 75 ~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
.+...+.+++....+.++||||+|++.++.+++.|.+.++.+..+||++++++|..++++|++|+.+|||||+++++|+
T Consensus 222 -~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~Gi 300 (523)
T 1oyw_A 222 -KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI 300 (523)
T ss_dssp -SHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTT
T ss_pred -CHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCC
Confidence 3888899988877788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHH
Q psy1621 155 DVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQ 207 (224)
Q Consensus 155 di~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 207 (224)
|+|++++||+++.|.|.++|.|++||+||.|..|.++++++..|....+.+.+
T Consensus 301 D~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp CCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998877766555443
No 19
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=2.7e-33 Score=236.30 Aligned_cols=221 Identities=51% Similarity=0.797 Sum_probs=31.0
Q ss_pred CcccceeecCCCCcccccccc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhhcc----CcccceeEEEEEecCCc
Q psy1621 1 MEELQMVCYPPGHGACADVHV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLIVG----DSMTRIRQFYIYIERED 75 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~----~~~~~i~~~~~~~~~~~ 75 (224)
+||++.+..+........++. .+...|.+++|||+++.+.. .....+..|..+.. .....+.+++..+...+
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLE---VTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEE 244 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHH---HHHHHCCSCEEEEECC-------------------
T ss_pred EEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHH---HHHHhcCCCeEEEecCccccCCCceEEEEEcCchh
Confidence 488888766543333333332 13567899999999886543 22344444443321 12345566666666666
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
.|...+.+++.....+++||||++++.++.+++.|.+.++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|
T Consensus 245 ~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld 324 (394)
T 1fuu_A 245 YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 324 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCC
Confidence 68888888888777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 224 (224)
+|++++||+++.|++...|.||+||+||.|+.|.|++++++.+...++.+++.++.+++++|.++.+++
T Consensus 325 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 393 (394)
T 1fuu_A 325 VQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 393 (394)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999998877653
No 20
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.94 E-value=8.7e-33 Score=208.53 Aligned_cols=157 Identities=31% Similarity=0.540 Sum_probs=146.1
Q ss_pred cceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 62 TRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 62 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
+++.+++..++..+.|...|.++++...++++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 35777888887745599999999988778899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q psy1621 142 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPM 218 (224)
Q Consensus 142 ~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (224)
+|||||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.+++++...+...++.+++.++..++..+.
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888876554
No 21
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=1.2e-29 Score=224.83 Aligned_cols=202 Identities=15% Similarity=0.188 Sum_probs=152.2
Q ss_pred CcccceeecCCC--Cccc--ccccc-CccCcccccccccccHhhhhhhhhhHHHhhh--hhhhcc-CcccceeEEEEEec
Q psy1621 1 MEELQMVCYPPG--HGAC--ADVHV-NVGARIGAGFNADINVEACADVDVNAAELRR--RVLIVG-DSMTRIRQFYIYIE 72 (224)
Q Consensus 1 ~~~~~~~~~~~~--~~~~--~~~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~--~~~i~~-~~~~~i~~~~~~~~ 72 (224)
+||++.+..|.. +... ++.+. .....+.+++|||.++.+...+. ..+.. +..+.. ...+++...+....
T Consensus 171 iDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~---~~l~~~~~~~~~~~~~r~nl~~~v~~~~ 247 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQ---KILCIEKCFTFTASFNRPNLYYEVRQKP 247 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHH---HHTTCCSCEEEECCCCCTTEEEEEEECC
T ss_pred EECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHH---HHhCCCCcEEEecCCCCcccEEEEEeCC
Confidence 589998765431 1111 11121 12357899999999987653332 22222 222222 22333332222222
Q ss_pred C-CccHHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q psy1621 73 R-EDWKFDTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLL 150 (224)
Q Consensus 73 ~-~~~k~~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~ 150 (224)
. ...+...+.+++... .++++||||+|++.++.+++.|.+.++.+..+||+|++++|..++++|++|+.+|||||+++
T Consensus 248 ~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~ 327 (591)
T 2v1x_A 248 SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 327 (591)
T ss_dssp SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS
T ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 1 123566777777643 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHH
Q psy1621 151 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDT 205 (224)
Q Consensus 151 ~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 205 (224)
++|+|+|++++||++++|.|.+.|+|++||+||+|+.|.|+++++..|...+..+
T Consensus 328 ~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred hcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988776655443
No 22
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=1.9e-29 Score=222.73 Aligned_cols=212 Identities=22% Similarity=0.322 Sum_probs=163.2
Q ss_pred CcccceeecCCCCcccc---ccccC-----ccCcccccccccccHhhhhhhhhhHHHhhhhhhh--------ccCcccce
Q psy1621 1 MEELQMVCYPPGHGACA---DVHVN-----VGARIGAGFNADINVEACADVDVNAAELRRRVLI--------VGDSMTRI 64 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i--------~~~~~~~i 64 (224)
+||++.+..+.-..... ..++. ....|++++|||+++.+..... ..+..+..+ .......+
T Consensus 232 iDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (563)
T 3i5x_A 232 LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLAN---NIMNKKECLFLDTVDKNEPEAHERI 308 (563)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTT---TTCCSSEEEEEESSCSSSCSSCTTE
T ss_pred EeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHH---HhcCCCceEEEeccCCCCccccccC
Confidence 48888877654222221 12221 2367899999999987543222 333332211 11233456
Q ss_pred eEEEEEecCCccHHHH----HHHHhcc-CCCCcEEEEeCchHHHHHHHHHHHhC---CCeEEEecCCCCHHHHHHHHHHh
Q psy1621 65 RQFYIYIEREDWKFDT----LCDLYGT-LSITQAVIFCNTRRKVDWLTESMLKK---EFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 65 ~~~~~~~~~~~~k~~~----l~~ll~~-~~~~~~iIf~~t~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.+.+........+... +...+.. ..+.++||||+|++.++.+++.|.+. ++.+..+||++++.+|..+++.|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f 388 (563)
T 3i5x_A 309 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 388 (563)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH
T ss_pred ceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Confidence 6666666554333332 2333332 35789999999999999999999886 88999999999999999999999
Q ss_pred hcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhcccccc
Q psy1621 137 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEE 215 (224)
Q Consensus 137 ~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (224)
++|+.+|||||+++++|+|+|++++||+++.|.+...|.||+||+||.|+.|.+++++...+...++.+++..+..+..
T Consensus 389 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 389 KKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp HHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred hcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988766654
No 23
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=9.6e-30 Score=225.44 Aligned_cols=212 Identities=22% Similarity=0.333 Sum_probs=163.4
Q ss_pred CcccceeecCCCCccc---cccccC-----ccCcccccccccccHhhhhhhhhhHHHhhhhhhh--------ccCcccce
Q psy1621 1 MEELQMVCYPPGHGAC---ADVHVN-----VGARIGAGFNADINVEACADVDVNAAELRRRVLI--------VGDSMTRI 64 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i--------~~~~~~~i 64 (224)
+||++.+..+.-.... ...++. ....|++++|||+++.+..... ..+..+..+ .......+
T Consensus 181 iDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~i 257 (579)
T 3sqw_A 181 LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLAN---NIMNKKECLFLDTVDKNEPEAHERI 257 (579)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTT---TTCCSSEEEEEESSCSSSCSSCTTE
T ss_pred EEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHH---HHcCCCceEEEeecCcccccccccc
Confidence 4888887765422222 222221 2367899999999987643222 333332221 11233456
Q ss_pred eEEEEEecCCccHH----HHHHHHhcc-CCCCcEEEEeCchHHHHHHHHHHHhC---CCeEEEecCCCCHHHHHHHHHHh
Q psy1621 65 RQFYIYIEREDWKF----DTLCDLYGT-LSITQAVIFCNTRRKVDWLTESMLKK---EFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 65 ~~~~~~~~~~~~k~----~~l~~ll~~-~~~~~~iIf~~t~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.+.+........+. ..+.+.+.. ..+.++||||+|++.++.+++.|.+. ++.+..+||++++.+|..++++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F 337 (579)
T 3sqw_A 258 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 337 (579)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH
T ss_pred ceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHh
Confidence 66666665533233 233333333 45789999999999999999999876 88999999999999999999999
Q ss_pred hcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhcccccc
Q psy1621 137 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEE 215 (224)
Q Consensus 137 ~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (224)
++|+.+|||||+++++|+|+|++++||+++.|.+...|.||+||+||.|+.|.|++++.+.+...++.+++..+..+..
T Consensus 338 ~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 416 (579)
T 3sqw_A 338 KKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 416 (579)
T ss_dssp HHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred hcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988766654
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=3.8e-32 Score=235.64 Aligned_cols=216 Identities=34% Similarity=0.651 Sum_probs=32.3
Q ss_pred CcccceeecCCCCccccc-ccc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhhc----cCcccceeEEEEEecCC
Q psy1621 1 MEELQMVCYPPGHGACAD-VHV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLIV----GDSMTRIRQFYIYIERE 74 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~----~~~~~~i~~~~~~~~~~ 74 (224)
+||++.+...+++..... ++. .+...|++++|||++.++. .+....+..+..+. ......+.+.+..+...
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 317 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVW---KFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR 317 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHH---HHHHHHSSSEEEEEEC-------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHH---HHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH
Confidence 488887776444433322 222 2456899999999998764 23334555544331 22345667777777776
Q ss_pred ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 75 DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 75 ~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
..|...+..++......++||||++++.++.+++.|.+.+..+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 318 ~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~Gl 397 (479)
T 3fmp_B 318 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 397 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCC
Confidence 67888898888877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCC------ChhHHHHHHhhccCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCcc
Q psy1621 155 DVQQVSLVINYDLPS------NRENYIHRIGRGGRFGRKGVAINFVTAE-DKRTLKDTEQFYNTRIEEMPMN 219 (224)
Q Consensus 155 di~~~~~vi~~~~p~------s~~~~~q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 219 (224)
|+|++++||++|.|+ +...|.||+||+||.|+.|.++++++.. +...++.+++.++..+..++.+
T Consensus 398 Dip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 469 (479)
T 3fmp_B 398 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 469 (479)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCc
Confidence 999999999999995 5689999999999999999999999876 4888999999999988887754
No 25
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=5.9e-29 Score=205.43 Aligned_cols=200 Identities=26% Similarity=0.380 Sum_probs=151.5
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhhcc-CcccceeEEEEEecCCccHH
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLIVG-DSMTRIRQFYIYIEREDWKF 78 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~-~~~~~i~~~~~~~~~~~~k~ 78 (224)
+||++.+..+.........+.. +...+.+++|||+++.....+. ..+..+..+.. ....++.+.+..+.... +
T Consensus 135 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 209 (337)
T 2z0m_A 135 IDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVK---DFITNYEEIEACIGLANVEHKFVHVKDDW-R- 209 (337)
T ss_dssp EESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH---HHSCSCEEEECSGGGGGEEEEEEECSSSS-H-
T ss_pred EEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHH---HhcCCceeeecccccCCceEEEEEeChHH-H-
Confidence 4788877665433333333322 3467788999999987543322 33333332222 23345666666665433 2
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC
Q psy1621 79 DTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQ 158 (224)
Q Consensus 79 ~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~ 158 (224)
...+.+....++++||||++++.++.+++.|. .+..+||+++..+|.+++++|++|+.+|||||+++++|+|+|+
T Consensus 210 -~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~ 284 (337)
T 2z0m_A 210 -SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPL 284 (337)
T ss_dssp -HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCC
T ss_pred -HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccC
Confidence 23355556677899999999999999998875 6789999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhcc
Q psy1621 159 VSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNT 211 (224)
Q Consensus 159 ~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (224)
+++||+++.|+|...|.||+||+||.|+.|.+++++. .+....+.+++.++.
T Consensus 285 ~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 285 VEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp BSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred CCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999 888888888877653
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.4e-30 Score=224.38 Aligned_cols=217 Identities=33% Similarity=0.573 Sum_probs=146.1
Q ss_pred CcccceeecCCCCccccc-ccc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhhc----cCcccceeEEEEEecCC
Q psy1621 1 MEELQMVCYPPGHGACAD-VHV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLIV----GDSMTRIRQFYIYIERE 74 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~----~~~~~~i~~~~~~~~~~ 74 (224)
+||++.+....+...... ++. .+...|.+++|||+++.+.. ........+..+. ......+.+.+......
T Consensus 265 iDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (508)
T 3fho_A 265 LDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEK---YAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE 341 (508)
T ss_dssp ECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHH---HHHHHSTTCEEECCCCCC----CCCCEEEEC--C
T ss_pred EechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHH---HHHHhcCCCeEEEeccccCCcccceEEEEECCch
Confidence 488887765444333222 111 23467899999999876432 2223333333221 12334566677777666
Q ss_pred ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 75 DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 75 ~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
..|...+.+++....++++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 342 ~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 342 EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 67899999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCC------CChhHHHHHHhhccCCCCcceEEEEecc-ccHHHHHHHHHHhccccccCCcch
Q psy1621 155 DVQQVSLVINYDLP------SNRENYIHRIGRGGRFGRKGVAINFVTA-EDKRTLKDTEQFYNTRIEEMPMNV 220 (224)
Q Consensus 155 di~~~~~vi~~~~p------~s~~~~~q~~GR~~R~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 220 (224)
|+|++++||+++.| .+...|.||+||+||.|+.|.+++++.+ .+...++.+++.++..+..++...
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~ 494 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDD 494 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC------
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCcc
Confidence 99999999999999 7899999999999999999999999984 577889999999999999888643
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.94 E-value=3.6e-26 Score=194.58 Aligned_cols=180 Identities=21% Similarity=0.232 Sum_probs=139.8
Q ss_pred ccCcccccccccc-cHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchH
Q psy1621 23 VGARIGAGFNADI-NVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRR 101 (224)
Q Consensus 23 ~~~~~~~~~sATi-~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~ 101 (224)
....|.+++|||+ +..+...+ ....+...+........++.+.+...+ |.+.+.+++.. .++++||||++++
T Consensus 191 ~~~~~~i~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~l~~-~~~~~lVF~~~~~ 263 (414)
T 3oiy_A 191 LKPGILVVSSATAKPRGIRPLL--FRDLLNFTVGRLVSVARNITHVRISSR----SKEKLVELLEI-FRDGILIFAQTEE 263 (414)
T ss_dssp CCCCEEEESSCCSSCCSSTTHH--HHHHHSCCSSCCCCCCCSEEEEEESSC----CHHHHHHHHHH-HCSSEEEEESSHH
T ss_pred CCCceEEEEecCCCcchhHHHH--HHHhhccCcCccccccccchheeeccC----HHHHHHHHHHH-cCCCEEEEECCHH
Confidence 3678999999994 54432111 112222122222334456666665542 66677777766 3489999999999
Q ss_pred HHHHHHHHHHhCCCeEE-EecCCCCHHHHHHHHHHhhcCCceEEEE----cCCcccCCCCCC-CCEEEEeCCC--CChhH
Q psy1621 102 KVDWLTESMLKKEFTVS-AMHGDMDQNARDVIMRQFRSGSSRVLIT----TDLLARGIDVQQ-VSLVINYDLP--SNREN 173 (224)
Q Consensus 102 ~~~~l~~~L~~~~~~~~-~~~g~~~~~~r~~~~~~f~~~~~~ilv~----t~~~~~Gvdi~~-~~~vi~~~~p--~s~~~ 173 (224)
.++.+++.|.+.++.+. .+||. +|. +++|++|+.+|||| |+++++|+|+|+ +++||+++.| .+..+
T Consensus 264 ~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~ 337 (414)
T 3oiy_A 264 EGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYT 337 (414)
T ss_dssp HHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHH
T ss_pred HHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHH
Confidence 99999999999999998 99995 344 99999999999999 999999999999 9999999999 99999
Q ss_pred HHHHHhhccCCC----CcceEEEEeccccHHHHHHHHHHhc--cccccCC
Q psy1621 174 YIHRIGRGGRFG----RKGVAINFVTAEDKRTLKDTEQFYN--TRIEEMP 217 (224)
Q Consensus 174 ~~q~~GR~~R~g----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 217 (224)
|.||+||+||.| ..|.+++++ .+...+..+++.++ .+++..+
T Consensus 338 y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~ 385 (414)
T 3oiy_A 338 YIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIE 385 (414)
T ss_dssp HHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccccccc
Confidence 999999999988 478898888 67788888888888 5555443
No 28
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.92 E-value=4.9e-26 Score=195.44 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=101.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE-----
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN----- 164 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~----- 164 (224)
++++||||++++.++.+++.|.+.++.+..+|| ++|.+++++|++|+.+|||||+++++|+|+| +++||+
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~ 251 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAF 251 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccc
Confidence 579999999999999999999999999999999 4688999999999999999999999999999 999986
Q ss_pred --------------eCCCCChhHHHHHHhhccCC-CCcceEEEEe---ccccHHHHHHHHHHhccccccC
Q psy1621 165 --------------YDLPSNRENYIHRIGRGGRF-GRKGVAINFV---TAEDKRTLKDTEQFYNTRIEEM 216 (224)
Q Consensus 165 --------------~~~p~s~~~~~q~~GR~~R~-g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 216 (224)
++.|.+.++|.||+||+||. |..|.|++++ ++.+...++.+++.+.....++
T Consensus 252 ~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l 321 (440)
T 1yks_A 252 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEV 321 (440)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCC
T ss_pred eeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccc
Confidence 88899999999999999998 6899999996 6778888888888764444333
No 29
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.91 E-value=4.9e-24 Score=193.07 Aligned_cols=121 Identities=22% Similarity=0.322 Sum_probs=103.1
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCC------------------------------------CeEEE
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKE------------------------------------FTVSA 119 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~------------------------------------~~~~~ 119 (224)
.+...+.+.+. .++++||||++++.++.+++.|.+.. .++.+
T Consensus 240 ~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~ 317 (715)
T 2va8_A 240 AIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAY 317 (715)
T ss_dssp HHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEE
Confidence 35666666654 46899999999999999999997642 25899
Q ss_pred ecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE----eC-------CCCChhHHHHHHhhccCCC--C
Q psy1621 120 MHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-------LPSNRENYIHRIGRGGRFG--R 186 (224)
Q Consensus 120 ~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~----~~-------~p~s~~~~~q~~GR~~R~g--~ 186 (224)
+||++++++|..+++.|++|+++|||||+++++|+|+|++++||+ |+ .|.|..+|.||+|||||.| .
T Consensus 318 ~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~ 397 (715)
T 2va8_A 318 HHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQ 397 (715)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCS
T ss_pred ECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 999999999999999999999999999999999999999999998 88 8999999999999999998 4
Q ss_pred cceEEEEecccc
Q psy1621 187 KGVAINFVTAED 198 (224)
Q Consensus 187 ~~~~~~~~~~~~ 198 (224)
.|.|+++++..+
T Consensus 398 ~G~~~~l~~~~~ 409 (715)
T 2va8_A 398 IGESIVVVRDKE 409 (715)
T ss_dssp CEEEEEECSCGG
T ss_pred CceEEEEeCCch
Confidence 789999987765
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.7e-24 Score=197.89 Aligned_cols=125 Identities=22% Similarity=0.385 Sum_probs=107.4
Q ss_pred HHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCC---------------------------------------eEEEec
Q psy1621 81 LCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEF---------------------------------------TVSAMH 121 (224)
Q Consensus 81 l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~---------------------------------------~~~~~~ 121 (224)
+.+.+......++||||++++.|+.+++.|...++ ++.++|
T Consensus 334 l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~H 413 (1010)
T 2xgj_A 334 IVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHH 413 (1010)
T ss_dssp HHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEES
T ss_pred HHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEEC
Confidence 44444443556999999999999999999876433 288999
Q ss_pred CCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE----eCC----CCChhHHHHHHhhccCCCC--cceEE
Q psy1621 122 GDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL----PSNRENYIHRIGRGGRFGR--KGVAI 191 (224)
Q Consensus 122 g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~----~~~----p~s~~~~~q~~GR~~R~g~--~~~~~ 191 (224)
|++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ||. |.|+..|.||+||+||.|. .|.|+
T Consensus 414 ggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi 493 (1010)
T 2xgj_A 414 SGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVI 493 (1010)
T ss_dssp TTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEE
Confidence 9999999999999999999999999999999999999999998 998 8999999999999999996 59999
Q ss_pred EEeccc-cHHHHHHH
Q psy1621 192 NFVTAE-DKRTLKDT 205 (224)
Q Consensus 192 ~~~~~~-~~~~~~~~ 205 (224)
+++.+. +...+.++
T Consensus 494 ~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 494 MMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EEECSCCCHHHHHHH
T ss_pred EEECCCCCHHHHHHH
Confidence 998865 44444443
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.91 E-value=6e-24 Score=192.63 Aligned_cols=208 Identities=21% Similarity=0.272 Sum_probs=142.0
Q ss_pred CcccceeecCCCCccccccccC--ccCcccccccccccHhhhhhhhhhHHHhhhhhhhccCcccceeEEE------EEec
Q psy1621 1 MEELQMVCYPPGHGACADVHVN--VGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFY------IYIE 72 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~------~~~~ 72 (224)
+||++++..+ .+|..++.+-. +...+.+++|||++... .....+..+.......+-.+...+ ....
T Consensus 144 iDE~H~l~~~-~r~~~~~~ll~~l~~~~~ii~lSATl~n~~-----~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~ 217 (720)
T 2zj8_A 144 ADEIHLIGSR-DRGATLEVILAHMLGKAQIIGLSATIGNPE-----ELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWED 217 (720)
T ss_dssp EETGGGGGCT-TTHHHHHHHHHHHBTTBEEEEEECCCSCHH-----HHHHHTTEEEEECCCCSSEEEEEEEETTEEEETT
T ss_pred EECCcccCCC-cccHHHHHHHHHhhcCCeEEEEcCCcCCHH-----HHHHHhCCcccCCCCCCCcceEEEEeCCeeeccc
Confidence 5899987643 34443332211 12688999999996420 111222221111111111111111 1111
Q ss_pred C----CccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC---------------------------------CC
Q psy1621 73 R----EDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK---------------------------------EF 115 (224)
Q Consensus 73 ~----~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~---------------------------------~~ 115 (224)
. ...+...+.+.+.. ++++||||++++.++.+++.|.+. ..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 295 (720)
T 2zj8_A 218 GSIDRFSSWEELVYDAIRK--KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRG 295 (720)
T ss_dssp SCEEECSSTTHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTT
T ss_pred cchhhhhHHHHHHHHHHhC--CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhc
Confidence 1 23356666666653 589999999999999999998753 12
Q ss_pred eEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE----eC----CCCChhHHHHHHhhccCCC--
Q psy1621 116 TVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD----LPSNRENYIHRIGRGGRFG-- 185 (224)
Q Consensus 116 ~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~----~~----~p~s~~~~~q~~GR~~R~g-- 185 (224)
++.++||++++++|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.|
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~ 375 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD 375 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTC
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCC
Confidence 4999999999999999999999999999999999999999999999998 66 5899999999999999998
Q ss_pred CcceEEEEeccccHHHHHHHHHHhccccccCCc
Q psy1621 186 RKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPM 218 (224)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (224)
..|.|+++++..+.. ..+++++..+.+++..
T Consensus 376 ~~G~~~~l~~~~~~~--~~~~~~~~~~~~~i~s 406 (720)
T 2zj8_A 376 EVGEGIIVSTSDDPR--EVMNHYIFGKPEKLFS 406 (720)
T ss_dssp SEEEEEEECSSSCHH--HHHHHHTTSCCCCCCC
T ss_pred CCceEEEEecCccHH--HHHHHHhcCCCCCcEe
Confidence 478899999887632 2334555444444443
No 32
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.90 E-value=2e-23 Score=187.12 Aligned_cols=129 Identities=24% Similarity=0.341 Sum_probs=113.8
Q ss_pred HHHHHHHHhcc-C-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 77 KFDTLCDLYGT-L-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 77 k~~~l~~ll~~-~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
+...+...+.. . .+.++||||+|+++++.+++.|.+.++.+..+||++++.+|..++++|++|+..|||||+++++|+
T Consensus 430 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~Gl 509 (661)
T 2d7d_A 430 QIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGL 509 (661)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTC
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCc
Confidence 55555444433 2 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCC-----CCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHH
Q psy1621 155 DVQQVSLVINYDL-----PSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTE 206 (224)
Q Consensus 155 di~~~~~vi~~~~-----p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 206 (224)
|+|++++||+++. |.+..+|.||+||+||. ..|.++++++..+....+.++
T Consensus 510 Dip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 510 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp CCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred ccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 9999999999997 99999999999999998 789999999886655444333
No 33
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.90 E-value=1.4e-24 Score=193.08 Aligned_cols=117 Identities=17% Similarity=0.138 Sum_probs=106.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEE-------
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLV------- 162 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~v------- 162 (224)
++++||||+|++.++.+++.|.+.++.+..+||+ +|.+++++|++|+.+|||||+++++|+|+| +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECccee
Confidence 5799999999999999999999999999999984 688899999999999999999999999997 8888
Q ss_pred -------------EEeCCCCChhHHHHHHhhccCCCC-cceEEEEec---cccHHHHHHHHHHhcc
Q psy1621 163 -------------INYDLPSNRENYIHRIGRGGRFGR-KGVAINFVT---AEDKRTLKDTEQFYNT 211 (224)
Q Consensus 163 -------------i~~~~p~s~~~~~q~~GR~~R~g~-~~~~~~~~~---~~~~~~~~~~~~~~~~ 211 (224)
++++.|.+.++|.||+||+||.|. .|.+++++. +.+...++.+++.+..
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l 495 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLL 495 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHH
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhcc
Confidence 677779999999999999999974 899999997 7788888888887644
No 34
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.90 E-value=1.3e-23 Score=189.99 Aligned_cols=120 Identities=23% Similarity=0.340 Sum_probs=106.0
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC------------------------------CCeEEEecCCCCH
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK------------------------------EFTVSAMHGDMDQ 126 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~------------------------------~~~~~~~~g~~~~ 126 (224)
+...+.+.+. .++++||||++++.++.+++.|.+. +.++.++||++++
T Consensus 231 ~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 308 (702)
T 2p6r_A 231 FEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLN 308 (702)
T ss_dssp HHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCH
T ss_pred HHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCH
Confidence 5566666654 4679999999999999999988653 1358899999999
Q ss_pred HHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE----eC---CCCChhHHHHHHhhccCCC--CcceEEEEeccc
Q psy1621 127 NARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD---LPSNRENYIHRIGRGGRFG--RKGVAINFVTAE 197 (224)
Q Consensus 127 ~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~----~~---~p~s~~~~~q~~GR~~R~g--~~~~~~~~~~~~ 197 (224)
++|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.|..+|.||+|||||.| ..|.|+++++..
T Consensus 309 ~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 388 (702)
T 2p6r_A 309 GQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 388 (702)
T ss_dssp HHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred HHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCc
Confidence 99999999999999999999999999999999999998 66 7899999999999999998 478999999887
Q ss_pred c
Q psy1621 198 D 198 (224)
Q Consensus 198 ~ 198 (224)
+
T Consensus 389 ~ 389 (702)
T 2p6r_A 389 D 389 (702)
T ss_dssp G
T ss_pred c
Confidence 6
No 35
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=3.4e-23 Score=185.65 Aligned_cols=130 Identities=22% Similarity=0.320 Sum_probs=114.7
Q ss_pred HHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 77 KFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 77 k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
+...+...+... .+.++||||+|+++++.+++.|.+.++.+..+||++++.+|..++++|++|+.+|||||+++++|+
T Consensus 424 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~Gl 503 (664)
T 1c4o_A 424 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGL 503 (664)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTC
T ss_pred hHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCc
Confidence 555555444332 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCC-----CCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHH
Q psy1621 155 DVQQVSLVINYDL-----PSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQ 207 (224)
Q Consensus 155 di~~~~~vi~~~~-----p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 207 (224)
|+|++++||+++. |.|..+|.||+||+||.+ .|.++++++..+....+.+++
T Consensus 504 Dip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 504 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp CCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred cCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999999997 899999999999999985 899999998876655544443
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=188.71 Aligned_cols=106 Identities=23% Similarity=0.408 Sum_probs=91.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC------CCeEEEecCC--------CCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKK------EFTVSAMHGD--------MDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~------~~~~~~~~g~--------~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
++++||||+++++++.+++.|.+. |+.+..+||+ |+..+|.+++++|++|+.+|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 789999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccc
Q psy1621 156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~ 197 (224)
+|++++||+||.|+|+.+|.||+||+||.| +.++++...+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999999999987754 4444444433
No 37
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.90 E-value=8.4e-25 Score=198.82 Aligned_cols=168 Identities=16% Similarity=0.244 Sum_probs=131.0
Q ss_pred cCcccccccccccHhhhhhhhhhHHHhh-hhhhhccCcccceeEEEEEecCCccHHH----HHHHHhccCCCCcEEEEeC
Q psy1621 24 GARIGAGFNADINVEACADVDVNAAELR-RRVLIVGDSMTRIRQFYIYIEREDWKFD----TLCDLYGTLSITQAVIFCN 98 (224)
Q Consensus 24 ~~~~~~~~sATi~~~~~~~~~~~~~~l~-~~~~i~~~~~~~i~~~~~~~~~~~~k~~----~l~~ll~~~~~~~~iIf~~ 98 (224)
...+++++|||++.+..+ ..+. .++.........+.++|......+ +.. .+.++.....++++||||+
T Consensus 239 ~~~~iIl~SAT~~~~~l~------~~~~~~~vi~v~gr~~pv~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~g~iLVF~~ 311 (773)
T 2xau_A 239 PDLKIIIMSATLDAEKFQ------RYFNDAPLLAVPGRTYPVELYYTPEFQRD-YLDSAIRTVLQIHATEEAGDILLFLT 311 (773)
T ss_dssp TTCEEEEEESCSCCHHHH------HHTTSCCEEECCCCCCCEEEECCSSCCSC-HHHHHHHHHHHHHHHSCSCEEEEECS
T ss_pred CCceEEEEeccccHHHHH------HHhcCCCcccccCcccceEEEEecCCchh-HHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 467899999999754221 2222 233222333334555555444433 332 3334444446789999999
Q ss_pred chHHHHHHHHHHHh-----------CCCeEEEecCCCCHHHHHHHHHHhh-----cCCceEEEEcCCcccCCCCCCCCEE
Q psy1621 99 TRRKVDWLTESMLK-----------KEFTVSAMHGDMDQNARDVIMRQFR-----SGSSRVLITTDLLARGIDVQQVSLV 162 (224)
Q Consensus 99 t~~~~~~l~~~L~~-----------~~~~~~~~~g~~~~~~r~~~~~~f~-----~~~~~ilv~t~~~~~Gvdi~~~~~v 162 (224)
+++.++.+++.|.+ .++.+..+||++++++|..+++.|. +|+.+|||||+++++|||+|++++|
T Consensus 312 ~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~V 391 (773)
T 2xau_A 312 GEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYV 391 (773)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEE
Confidence 99999999999975 5778999999999999999999999 9999999999999999999999999
Q ss_pred EEeCC------------------CCChhHHHHHHhhccCCCCcceEEEEeccccH
Q psy1621 163 INYDL------------------PSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 163 i~~~~------------------p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
|+++. |.|..+|.||+||+||. ..|.|+.++++.+.
T Consensus 392 Id~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 392 VDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99887 89999999999999998 79999999976544
No 38
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=2.3e-23 Score=178.99 Aligned_cols=127 Identities=24% Similarity=0.408 Sum_probs=115.4
Q ss_pred CccHHHHHHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecC--------CCCHHHHHHHHHHhhcCCc
Q psy1621 74 EDWKFDTLCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHG--------DMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 74 ~~~k~~~l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g--------~~~~~~r~~~~~~f~~~~~ 141 (224)
...|+..|.+++.. ..+.++||||++++.++.+++.|.+.++.+..+|| +++..+|..++++|++|+.
T Consensus 341 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~ 420 (494)
T 1wp9_A 341 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEF 420 (494)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSC
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCc
Confidence 44589999988876 46889999999999999999999999999999999 9999999999999999999
Q ss_pred eEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHH
Q psy1621 142 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRT 201 (224)
Q Consensus 142 ~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 201 (224)
+|||||+++++|+|+|++++||+++.||++..|.||+||+||.|+ |.++.++.+.+.+.
T Consensus 421 ~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 421 NVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp SEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred eEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 999999999999999999999999999999999999999999998 99999998875443
No 39
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.8e-24 Score=199.96 Aligned_cols=118 Identities=21% Similarity=0.379 Sum_probs=98.7
Q ss_pred HHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCC---------------------------------------eEEEe
Q psy1621 80 TLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEF---------------------------------------TVSAM 120 (224)
Q Consensus 80 ~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~---------------------------------------~~~~~ 120 (224)
.+...+......++||||++++.|+.++..|...++ ++..+
T Consensus 431 ~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~ 510 (1108)
T 3l9o_A 431 KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIH 510 (1108)
T ss_dssp HHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeee
Confidence 344444444667999999999999999998854322 28999
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCC--------CChhHHHHHHhhccCCC--CcceE
Q psy1621 121 HGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--------SNRENYIHRIGRGGRFG--RKGVA 190 (224)
Q Consensus 121 ~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p--------~s~~~~~q~~GR~~R~g--~~~~~ 190 (224)
||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.| .|...|.||+||+||.| ..|.|
T Consensus 511 Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ 590 (1108)
T 3l9o_A 511 HSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIV 590 (1108)
T ss_dssp CSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEE
Confidence 999999999999999999999999999999999999999999976653 36778999999999999 57888
Q ss_pred EEEeccc
Q psy1621 191 INFVTAE 197 (224)
Q Consensus 191 ~~~~~~~ 197 (224)
++++.+.
T Consensus 591 ill~~~~ 597 (1108)
T 3l9o_A 591 IMMIDEK 597 (1108)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 8888765
No 40
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.89 E-value=1e-22 Score=189.35 Aligned_cols=128 Identities=19% Similarity=0.342 Sum_probs=107.6
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCC---------------------------------------eE
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEF---------------------------------------TV 117 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~---------------------------------------~~ 117 (224)
+...+.+.+......++||||++++.|+.++..|.+.++ ++
T Consensus 323 ~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 323 TWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 566777777776778999999999999999999976554 58
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCC---------ChhHHHHHHhhccCCC--C
Q psy1621 118 SAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPS---------NRENYIHRIGRGGRFG--R 186 (224)
Q Consensus 118 ~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~---------s~~~~~q~~GR~~R~g--~ 186 (224)
.++||++++.+|..+++.|++|.++|||||+++++|+|+|+ ..||+.+.|. |..+|.||+|||||.| .
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 99999999999999999999999999999999999999999 6666655555 9999999999999998 5
Q ss_pred cceEEEEecc--ccHHHHHHH
Q psy1621 187 KGVAINFVTA--EDKRTLKDT 205 (224)
Q Consensus 187 ~~~~~~~~~~--~~~~~~~~~ 205 (224)
.|.|++++.. .+...++.+
T Consensus 482 ~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 482 TGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp SEEEEEECCSSCCCHHHHHHH
T ss_pred ceEEEEecCCCcchHHHHHHH
Confidence 6778888743 344444444
No 41
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.89 E-value=5.1e-23 Score=165.87 Aligned_cols=125 Identities=17% Similarity=0.214 Sum_probs=99.7
Q ss_pred CCccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHHHhhcC-Cce-EEEEc
Q psy1621 73 REDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKK-EFTVSAMHGDMDQNARDVIMRQFRSG-SSR-VLITT 147 (224)
Q Consensus 73 ~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~-~~~-ilv~t 147 (224)
....|+..|.+++... .+.++||||+++..++.+...|.+. ++.+..+||+++..+|..++++|+++ +.+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3455999999999876 6789999999999999999999885 99999999999999999999999998 666 79999
Q ss_pred CCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcce--EEEEeccc
Q psy1621 148 DLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV--AINFVTAE 197 (224)
Q Consensus 148 ~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~--~~~~~~~~ 197 (224)
+++++|+|++.+++||+||+||++..|.|++||++|.|+.+. ++.++..+
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999999998665 45566655
No 42
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.89 E-value=3.7e-23 Score=181.58 Aligned_cols=125 Identities=23% Similarity=0.332 Sum_probs=70.3
Q ss_pred ccHHHHHHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhC------------CCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 75 DWKFDTLCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKK------------EFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 75 ~~k~~~l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~------------~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
..|...|.+++.+ .++.++||||+++++++.+++.|.+. |.....+||++++++|..++++|++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 4588888888864 46789999999999999999999775 4556667888999999999999999
Q ss_pred -CCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHH
Q psy1621 139 -GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRT 201 (224)
Q Consensus 139 -~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 201 (224)
|+.+|||||+++++|+|+|++++||+||+|+|+..|.||+|| ||. ..|.++.+++..+...
T Consensus 451 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 451 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp ---CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred cCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 999999999999999999999999999999999999999999 998 7899999998875543
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.89 E-value=4.6e-23 Score=194.17 Aligned_cols=167 Identities=15% Similarity=0.157 Sum_probs=129.9
Q ss_pred cCcccccccccccHhhhhhhhhhHHHhhhhhhhccCccc--ceeEEEEEecCCccHHHHHHHHhccC-CCCcEEEEeCch
Q psy1621 24 GARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMT--RIRQFYIYIEREDWKFDTLCDLYGTL-SITQAVIFCNTR 100 (224)
Q Consensus 24 ~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~~~--~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iIf~~t~ 100 (224)
...+.+++|||..+... .+....++....+...+.. .+..++.... +......++... .+++++|||+++
T Consensus 750 ~~~~vl~lSATp~p~~l---~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~----~~~i~~~il~~l~~g~qvlvf~~~v 822 (1151)
T 2eyq_A 750 ANVDILTLTATPIPRTL---NMAMSGMRDLSIIATPPARRLAVKTFVREYD----SMVVREAILREILRGGQVYYLYNDV 822 (1151)
T ss_dssp TTSEEEEEESSCCCHHH---HHHHTTTSEEEECCCCCCBCBCEEEEEEECC----HHHHHHHHHHHHTTTCEEEEECCCS
T ss_pred CCCCEEEEcCCCChhhH---HHHHhcCCCceEEecCCCCccccEEEEecCC----HHHHHHHHHHHHhcCCeEEEEECCH
Confidence 45789999999866543 3333444444433333322 2333333222 222223333322 568999999999
Q ss_pred HHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCC-CCChhHHHHH
Q psy1621 101 RKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-PSNRENYIHR 177 (224)
Q Consensus 101 ~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~-p~s~~~~~q~ 177 (224)
++++.+++.|.+. +.++..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+++. ++++.+|.|+
T Consensus 823 ~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr 902 (1151)
T 2eyq_A 823 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 902 (1151)
T ss_dssp SCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHH
Confidence 9999999999887 789999999999999999999999999999999999999999999999999988 5799999999
Q ss_pred HhhccCCCCcceEEEEeccc
Q psy1621 178 IGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 178 ~GR~~R~g~~~~~~~~~~~~ 197 (224)
+||+||.|+.|.|++++.++
T Consensus 903 ~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 903 RGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp HTTCCBTTBCEEEEEEECCG
T ss_pred HhccCcCCCceEEEEEECCc
Confidence 99999999999999998764
No 44
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.89 E-value=1.2e-23 Score=189.72 Aligned_cols=142 Identities=26% Similarity=0.389 Sum_probs=90.5
Q ss_pred CccHHHHHHHHhccC----CCCcEEEEeCchHHHHHHHHHHHhCC----CeEEEe--------cCCCCHHHHHHHHHHhh
Q psy1621 74 EDWKFDTLCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKKE----FTVSAM--------HGDMDQNARDVIMRQFR 137 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~~----~~~~~~--------~g~~~~~~r~~~~~~f~ 137 (224)
...|...|.+++... +++++||||+++++++.+++.|.+.+ +.+..+ ||+|++++|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 345888898888754 57899999999999999999999987 788888 55999999999999999
Q ss_pred c-CCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHH----HHHhccc
Q psy1621 138 S-GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDT----EQFYNTR 212 (224)
Q Consensus 138 ~-~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 212 (224)
+ |+.+|||||+++++|+|+|++++||+||.|+|+.+|.||+|| ||. +.|.++++++..+......+ ++.++..
T Consensus 458 ~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 535 (696)
T 2ykg_A 458 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDS 535 (696)
T ss_dssp ---CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 8 999999999999999999999999999999999999999999 998 78999999988777555555 4455544
Q ss_pred cccCC
Q psy1621 213 IEEMP 217 (224)
Q Consensus 213 ~~~~~ 217 (224)
+.+++
T Consensus 536 ~~~~~ 540 (696)
T 2ykg_A 536 ILRLQ 540 (696)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 44433
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.89 E-value=3.6e-23 Score=193.66 Aligned_cols=174 Identities=20% Similarity=0.264 Sum_probs=133.8
Q ss_pred ccCcccccccccccHhhhhhhhhhHHHhhhhhhhc----cCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeC
Q psy1621 23 VGARIGAGFNADINVEACADVDVNAAELRRRVLIV----GDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCN 98 (224)
Q Consensus 23 ~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~----~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~ 98 (224)
+...|.+++|||++.. . ......+..+..+. .....++.+.+. . ..|...|.+++... ++++||||+
T Consensus 213 ~~~~q~~l~SAT~t~~-~---~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~-~~k~~~L~~ll~~~-~~~~LVF~~ 283 (1054)
T 1gku_B 213 VGEARGCLMVSTATAK-K---GKKAELFRQLLNFDIGSSRITVRNVEDVAV---N-DESISTLSSILEKL-GTGGIIYAR 283 (1054)
T ss_dssp EECCSSEEEECCCCSC-C---CTTHHHHHHHHCCCCSCCEECCCCEEEEEE---S-CCCTTTTHHHHTTS-CSCEEEEES
T ss_pred ccCCceEEEEecCCCc-h---hHHHHHhhcceEEEccCcccCcCCceEEEe---c-hhHHHHHHHHHhhc-CCCEEEEEc
Confidence 3457899999999776 2 12223333333321 123345666555 2 33777788888765 478999999
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEE----cCCcccCCCCCCC-CEEEEeCCC-----
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLIT----TDLLARGIDVQQV-SLVINYDLP----- 168 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~----t~~~~~Gvdi~~~-~~vi~~~~p----- 168 (224)
+++.++.+++.|.+. +.+..+||++ ..++++|++|+.+|||| |+++++|+|+|++ ++||++|.|
T Consensus 284 t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~ 357 (1054)
T 1gku_B 284 TGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVT 357 (1054)
T ss_dssp SHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEE
T ss_pred CHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCccccc
Confidence 999999999999888 9999999998 36789999999999999 8999999999995 999999999
Q ss_pred ------------------------------------------------------------------CChhHHHHHHhhcc
Q psy1621 169 ------------------------------------------------------------------SNRENYIHRIGRGG 182 (224)
Q Consensus 169 ------------------------------------------------------------------~s~~~~~q~~GR~~ 182 (224)
.+..+|.||+||+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRag 437 (1054)
T 1gku_B 358 IEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTS 437 (1054)
T ss_dssp CSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTC
T ss_pred ccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhh
Confidence 78999999999999
Q ss_pred CCCCcc--eEEEEeccccHHHHHHHHHHhcc
Q psy1621 183 RFGRKG--VAINFVTAEDKRTLKDTEQFYNT 211 (224)
Q Consensus 183 R~g~~~--~~~~~~~~~~~~~~~~~~~~~~~ 211 (224)
|.|..| .++.++..++...+..+++.++.
T Consensus 438 R~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 438 RLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp CEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred hccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 987775 47778888888899999998875
No 46
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.89 E-value=7.5e-24 Score=182.41 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=94.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeC---
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYD--- 166 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~--- 166 (224)
.+++||||++++.++.+++.|.+.++.+..+||++. .++++.|++|+.+|||||+++++|+|+|+ ++||++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~ 262 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCL 262 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcc
Confidence 569999999999999999999999999999999754 57899999999999999999999999999 9999998
Q ss_pred -----------------CCCChhHHHHHHhhccCCCC-cceEEEEecc
Q psy1621 167 -----------------LPSNRENYIHRIGRGGRFGR-KGVAINFVTA 196 (224)
Q Consensus 167 -----------------~p~s~~~~~q~~GR~~R~g~-~~~~~~~~~~ 196 (224)
.|.+..+|.||+||+||.|. .|.++++...
T Consensus 263 ~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 263 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999997 7888888644
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.88 E-value=6.5e-23 Score=183.63 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=106.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE----
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN---- 164 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~---- 164 (224)
.++++||||++++.++.+++.|.+.++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~ 483 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKS 483 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCc
Confidence 46799999999999999999999999999999994 789999999999999999999999999999 999998
Q ss_pred ----------------eCCCCChhHHHHHHhhccCC-CCcceEEEEe---ccccHHHHHHHHHHhc
Q psy1621 165 ----------------YDLPSNRENYIHRIGRGGRF-GRKGVAINFV---TAEDKRTLKDTEQFYN 210 (224)
Q Consensus 165 ----------------~~~p~s~~~~~q~~GR~~R~-g~~~~~~~~~---~~~~~~~~~~~~~~~~ 210 (224)
++.|.+.++|.||+||+||. |+.|.|++++ +..+...++.++..+.
T Consensus 484 ~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~ 549 (673)
T 2wv9_A 484 VKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKIL 549 (673)
T ss_dssp CCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHH
T ss_pred ccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHh
Confidence 56899999999999999999 7899999996 5667777777777653
No 48
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.88 E-value=1.4e-22 Score=190.07 Aligned_cols=174 Identities=20% Similarity=0.200 Sum_probs=133.0
Q ss_pred cCcccccccccc-cHhhhhhhhhhHHHhhhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHH
Q psy1621 24 GARIGAGFNADI-NVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRK 102 (224)
Q Consensus 24 ~~~~~~~~sATi-~~~~~~~~~~~~~~l~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~ 102 (224)
...|++++|||+ +..+... .....+...+........++.+.+..++ |...|.+++... ++++||||++++.
T Consensus 249 ~~~q~ll~SAT~~p~~~~~~--~~~~~l~i~v~~~~~~~~~i~~~~~~~~----k~~~L~~ll~~~-~~~~LVF~~s~~~ 321 (1104)
T 4ddu_A 249 KPGILVVSSATAKPRGIRPL--LFRDLLNFTVGRLVSVARNITHVRISSR----SKEKLVELLEIF-RDGILIFAQTEEE 321 (1104)
T ss_dssp CCCEEEEECBSSCCCSSTTH--HHHHHTCCCCCBCCCCCCCEEEEEESCC----CHHHHHHHHHHH-CSSEEEEESSSHH
T ss_pred CCceEEEEcCCCCcHHHHHH--HhhcceeEEeccCCCCcCCceeEEEecC----HHHHHHHHHHhc-CCCEEEEECcHHH
Confidence 678999999995 4442211 1112222222223344566777766552 667777777663 4899999999999
Q ss_pred HHHHHHHHHhCCCeEE-EecCCCCHHHHHHHHHHhhcCCceEEEE----cCCcccCCCCCC-CCEEEEeCCCC-------
Q psy1621 103 VDWLTESMLKKEFTVS-AMHGDMDQNARDVIMRQFRSGSSRVLIT----TDLLARGIDVQQ-VSLVINYDLPS------- 169 (224)
Q Consensus 103 ~~~l~~~L~~~~~~~~-~~~g~~~~~~r~~~~~~f~~~~~~ilv~----t~~~~~Gvdi~~-~~~vi~~~~p~------- 169 (224)
++.+++.|.+.++.+. .+||. |.+ +++|++|+.+|||| |+++++|+|+|+ +++||+||.|.
T Consensus 322 a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~ 395 (1104)
T 4ddu_A 322 GKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLEL 395 (1104)
T ss_dssp HHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSS
T ss_pred HHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCccc
Confidence 9999999999999998 99993 555 99999999999999 999999999999 99999999998
Q ss_pred -----------------------------------------------------------------ChhHHHHHHhhccCC
Q psy1621 170 -----------------------------------------------------------------NRENYIHRIGRGGRF 184 (224)
Q Consensus 170 -----------------------------------------------------------------s~~~~~q~~GR~~R~ 184 (224)
+..+|+||+||+||.
T Consensus 396 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~ 475 (1104)
T 4ddu_A 396 DKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRI 475 (1104)
T ss_dssp SSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcc
Confidence 778999999999997
Q ss_pred CCcc--eEEEEeccccHHHHHHHHHHhc
Q psy1621 185 GRKG--VAINFVTAEDKRTLKDTEQFYN 210 (224)
Q Consensus 185 g~~~--~~~~~~~~~~~~~~~~~~~~~~ 210 (224)
|..| .++.++..+|...+..+++.++
T Consensus 476 ~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 476 LNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp ETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred cCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 6432 3444444478888888888876
No 49
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.88 E-value=2.3e-23 Score=182.59 Aligned_cols=129 Identities=25% Similarity=0.356 Sum_probs=93.1
Q ss_pred ccHHHHHHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhCC------------CeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 75 DWKFDTLCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKKE------------FTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 75 ~~k~~~l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~~------------~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
..|...|.+++.. .++.++||||+++++++.+++.|.+.+ .+...+||+|++++|..++++|++
T Consensus 370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 449 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA 449 (555)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhc
Confidence 4588888888765 356899999999999999999998763 344556679999999999999999
Q ss_pred -CCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHH
Q psy1621 139 -GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDT 205 (224)
Q Consensus 139 -~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 205 (224)
|+.+|||||+++++|+|+|++++||+||+|+|+..|.||+|| ||. +.|.++.++++.+......+
T Consensus 450 ~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 450 SGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp --CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 898 89999999998876655555
No 50
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.88 E-value=7.9e-22 Score=174.28 Aligned_cols=164 Identities=18% Similarity=0.279 Sum_probs=126.7
Q ss_pred cccccccccHhhhhhhhhhHHHhhhhhhhccC--cccceeEE-EEEecCCccHHHHHHHHhccC--CCCcEEEEeCchHH
Q psy1621 28 GAGFNADINVEACADVDVNAAELRRRVLIVGD--SMTRIRQF-YIYIEREDWKFDTLCDLYGTL--SITQAVIFCNTRRK 102 (224)
Q Consensus 28 ~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~--~~~~i~~~-~~~~~~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~ 102 (224)
...||+|...+.. .+...+ .-.+....+ +..++.+. .++.+ ...|..++.+.+... .+.|+||||+|++.
T Consensus 412 L~GMTGTa~te~~---Ef~~iY-~l~vv~IPtnkp~~R~d~~d~vy~t-~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 412 LAGMTGTAKTEES---EFVQVY-GMEVVVIPTHKPMIRKDHDDLVFRT-QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEK 486 (822)
T ss_dssp EEEEESSCGGGHH---HHHHHS-CCCEEECCCSSCCCCEECCCEEESS-HHHHHHHHHHHHHHHHHHTCCEEEEESSHHH
T ss_pred HeEECCCCchHHH---HHHHHh-CCeEEEECCCCCcceeecCcEEEec-HHHHHHHHHHHHHHHhhCCCCEEEEECCHHH
Confidence 4668999866542 122222 222222222 22233332 33444 445999999888653 57899999999999
Q ss_pred HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC--------CCCEEEEeCCCCChhHH
Q psy1621 103 VDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQ--------QVSLVINYDLPSNRENY 174 (224)
Q Consensus 103 ~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~--------~~~~vi~~~~p~s~~~~ 174 (224)
++.+++.|.+.|+.+..+||+....++..+..+++.| .|+|||+++++|+||+ +..+||+++.|.|...|
T Consensus 487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y 564 (822)
T 3jux_A 487 SELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRID 564 (822)
T ss_dssp HHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHH
Confidence 9999999999999999999997777776666667666 6999999999999998 66799999999999999
Q ss_pred HHHHhhccCCCCcceEEEEecccc
Q psy1621 175 IHRIGRGGRFGRKGVAINFVTAED 198 (224)
Q Consensus 175 ~q~~GR~~R~g~~~~~~~~~~~~~ 198 (224)
.|++||+||.|.+|.+++|++.+|
T Consensus 565 ~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 565 NQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp HHHHTTSSCSSCCCEEEEEEETTS
T ss_pred HHhhCccccCCCCeeEEEEechhH
Confidence 999999999999999999998876
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.88 E-value=3.4e-23 Score=177.32 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=90.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCE--------
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSL-------- 161 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~-------- 161 (224)
++++||||++++.++.+++.|.+.+..+..+||+ +|.+++++|++|+.+|||||+++++|+|+| +.+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~ 245 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTI 245 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccc
Confidence 5689999999999999999999999999999997 578899999999999999999999999999 555
Q ss_pred ---------EEEeCCCCChhHHHHHHhhccCCCC-cceEEEEe
Q psy1621 162 ---------VINYDLPSNRENYIHRIGRGGRFGR-KGVAINFV 194 (224)
Q Consensus 162 ---------vi~~~~p~s~~~~~q~~GR~~R~g~-~~~~~~~~ 194 (224)
|++++.|.+..+|.||+||+||.|. .+.++++.
T Consensus 246 ~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 246 KPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 5788899999999999999999985 55556655
No 52
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.88 E-value=4e-23 Score=178.26 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=94.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE-----
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN----- 164 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~----- 164 (224)
++++||||++++.++.+++.|.+.++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 5799999999999999999999999999999995 6788999999999999999999999999999 99999
Q ss_pred ---------------eCCCCChhHHHHHHhhccCCCC-cceEEEEeccc
Q psy1621 165 ---------------YDLPSNRENYIHRIGRGGRFGR-KGVAINFVTAE 197 (224)
Q Consensus 165 ---------------~~~p~s~~~~~q~~GR~~R~g~-~~~~~~~~~~~ 197 (224)
++.|.|..+|.||+||+||.|. .|.+++++...
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 6799999999999999999997 89999999875
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.87 E-value=6.4e-22 Score=184.02 Aligned_cols=136 Identities=20% Similarity=0.267 Sum_probs=120.8
Q ss_pred CccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHh-CCCeEEEecCCCCHHHHHHHHHHhhcCC--ceEEEEcCCc
Q psy1621 74 EDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLK-KEFTVSAMHGDMDQNARDVIMRQFRSGS--SRVLITTDLL 150 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~-~~~~~~~~~g~~~~~~r~~~~~~f~~~~--~~ilv~t~~~ 150 (224)
...|...|.+++....++++||||++++.++.+++.|.+ .|+++..+||+|++.+|..++++|++|+ .+|||||+++
T Consensus 487 ~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~ 566 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG 566 (968)
T ss_dssp TSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCT
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchh
Confidence 345999999999888889999999999999999999985 5999999999999999999999999998 9999999999
Q ss_pred ccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHh
Q psy1621 151 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFY 209 (224)
Q Consensus 151 ~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 209 (224)
++|+|+|++++||++++|+++..|.|++||+||.|+.+.|+++....+......+.+.+
T Consensus 567 ~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 567 SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp TCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred hcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999988766665544444444555555
No 54
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.87 E-value=3e-22 Score=179.94 Aligned_cols=128 Identities=18% Similarity=0.266 Sum_probs=113.1
Q ss_pred EEEecCCccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
+++.. ...|..+|.+.+... .+.++||||+|++.++.+++.|.+.|+.+..+||++...+|..+.++|+.| .|+|
T Consensus 409 ~v~~~-~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlI 485 (844)
T 1tf5_A 409 LIYRT-MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTI 485 (844)
T ss_dssp EEESS-HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEE
T ss_pred EEEeC-HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEE
Confidence 34444 445999998887642 567999999999999999999999999999999999888887776666665 6999
Q ss_pred EcCCcccCCCCC--------CCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEecccc
Q psy1621 146 TTDLLARGIDVQ--------QVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAED 198 (224)
Q Consensus 146 ~t~~~~~Gvdi~--------~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 198 (224)
||+++++|+||+ ++.+||+++.|.|...|.||+||+||.|+.|.+++|++..|
T Consensus 486 ATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 486 ATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp EETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred eCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999999 78899999999999999999999999999999999998765
No 55
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.87 E-value=2.2e-23 Score=185.08 Aligned_cols=119 Identities=24% Similarity=0.410 Sum_probs=101.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEE----
Q psy1621 88 LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI---- 163 (224)
Q Consensus 88 ~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi---- 163 (224)
..++++||||+|++.++.+++.|.+.++.+..+||++++++ |.++..+|||||+++++|||+| +++||
T Consensus 394 ~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl 465 (666)
T 3o8b_A 394 IRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNT 465 (666)
T ss_dssp SSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCE
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCc
Confidence 36789999999999999999999999999999999999865 4566679999999999999997 99988
Q ss_pred ------EeC-----------CCCChhHHHHHHhhccCCCCcceEEEEeccccHHH--H--HHHHHHhccccccC
Q psy1621 164 ------NYD-----------LPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRT--L--KDTEQFYNTRIEEM 216 (224)
Q Consensus 164 ------~~~-----------~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~ 216 (224)
+|| .|.+.++|.||+||+|| |+.|. +.|+++.+... + ..+++..+..+...
T Consensus 466 ~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~ 537 (666)
T 3o8b_A 466 CVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWY 537 (666)
T ss_dssp EEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTS
T ss_pred ccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCcccc
Confidence 566 89999999999999999 88999 88888876554 3 56666655555443
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.87 E-value=6.6e-23 Score=185.86 Aligned_cols=189 Identities=17% Similarity=0.170 Sum_probs=127.8
Q ss_pred CcccceeecCCCCccccccccCccCcccccccccccHhhhhhhhhhHHHhhhhhhhccCc--ccceeEEEEEecCCccHH
Q psy1621 1 MEELQMVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDS--MTRIRQFYIYIEREDWKF 78 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i~~~~--~~~i~~~~~~~~~~~~k~ 78 (224)
+||++.+-+... ..........+.+++|||..+...+... ........+...+ ...+... +.... +.
T Consensus 496 IDEaHr~g~~qr----~~l~~~~~~~~vL~mSATp~p~tl~~~~---~g~~~~s~i~~~p~~r~~i~~~---~~~~~-~~ 564 (780)
T 1gm5_A 496 IDEQHRFGVKQR----EALMNKGKMVDTLVMSATPIPRSMALAF---YGDLDVTVIDEMPPGRKEVQTM---LVPMD-RV 564 (780)
T ss_dssp EESCCCC---------CCCCSSSSCCCEEEEESSCCCHHHHHHH---TCCSSCEEECCCCSSCCCCEEC---CCCSS-TH
T ss_pred ecccchhhHHHH----HHHHHhCCCCCEEEEeCCCCHHHHHHHH---hCCcceeeeeccCCCCcceEEE---Eeccc-hH
Confidence 489988643331 1112223467899999997665432111 0000001111111 1122221 11222 34
Q ss_pred HHHHHHhc-cC-CCCcEEEEeCch--------HHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 79 DTLCDLYG-TL-SITQAVIFCNTR--------RKVDWLTESMLK---KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 79 ~~l~~ll~-~~-~~~~~iIf~~t~--------~~~~~l~~~L~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
..+.+.+. .. .+.+++|||++. +.++.+++.|.+ .+.++..+||+|++++|..++++|++|+.+|||
T Consensus 565 ~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILV 644 (780)
T 1gm5_A 565 NEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILV 644 (780)
T ss_dssp HHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCC
T ss_pred HHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 44444443 33 567899999965 457888888887 367899999999999999999999999999999
Q ss_pred EcCCcccCCCCCCCCEEEEeCCCC-ChhHHHHHHhhccCCCCcceEEEEeccccHH
Q psy1621 146 TTDLLARGIDVQQVSLVINYDLPS-NRENYIHRIGRGGRFGRKGVAINFVTAEDKR 200 (224)
Q Consensus 146 ~t~~~~~Gvdi~~~~~vi~~~~p~-s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 200 (224)
||+++++|+|+|++++||+++.|. +...+.|++||+||.|+.|.|++++.+.+..
T Consensus 645 aT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 645 STTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp CSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred ECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 999999999999999999999995 7889999999999999999999998743333
No 57
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.87 E-value=4.8e-23 Score=179.75 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=98.3
Q ss_pred HHHHHHHHhccC---CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEc-CCccc
Q psy1621 77 KFDTLCDLYGTL---SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITT-DLLAR 152 (224)
Q Consensus 77 k~~~l~~ll~~~---~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t-~~~~~ 152 (224)
+...+.+++... .+.++|||++ .+.++.+++.|.+.+.++..+||+++..+|.++++.|++|+.+||||| +++++
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~ 410 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 410 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc
Confidence 444455555443 3455666666 888999999999988899999999999999999999999999999999 99999
Q ss_pred CCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcce
Q psy1621 153 GIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV 189 (224)
Q Consensus 153 Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~ 189 (224)
|+|+|++++||+++.|+++..|.|++||+||.|+.+.
T Consensus 411 GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~ 447 (510)
T 2oca_A 411 GISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKT 447 (510)
T ss_dssp SCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCC
T ss_pred ccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCc
Confidence 9999999999999999999999999999999998763
No 58
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.87 E-value=4.5e-22 Score=182.13 Aligned_cols=124 Identities=23% Similarity=0.335 Sum_probs=75.6
Q ss_pred ccHHHHHHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhC------------CCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 75 DWKFDTLCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKK------------EFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 75 ~~k~~~l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~------------~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
..|+..|.+++.. .++.++||||+++++++.+++.|.+. |.+...+||+++..+|..++++|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 4488888888865 46789999999999999999999873 4566778999999999999999999
Q ss_pred -CCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHH
Q psy1621 139 -GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKR 200 (224)
Q Consensus 139 -~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 200 (224)
|+++|||||+++++|+|+|++++||+||.|+|+..|.||+|| ||. +.|.++.+++..+..
T Consensus 692 ~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred cCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999999999999999999999999 998 889999999886554
No 59
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.87 E-value=7.9e-22 Score=176.38 Aligned_cols=116 Identities=19% Similarity=0.408 Sum_probs=101.0
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCcccCCCCCCCCEEEEeCC-
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS--GSSRVLITTDLLARGIDVQQVSLVINYDL- 167 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~--~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~- 167 (224)
...+|||+|++.++.+++.|.+.+..+..+||+|++++|..+++.|++ |+.+|||||+++++|+|+ ++++||+++.
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 345889999999999999999999999999999999999999999999 889999999999999999 9999999998
Q ss_pred -------------CCChhHHHHHHhhccCCCCc---ceEEEEeccccHHHHHHHHHH
Q psy1621 168 -------------PSNRENYIHRIGRGGRFGRK---GVAINFVTAEDKRTLKDTEQF 208 (224)
Q Consensus 168 -------------p~s~~~~~q~~GR~~R~g~~---~~~~~~~~~~~~~~~~~~~~~ 208 (224)
|.+..+|.||+||+||.|.. |.|+.+.. .+...++++.+.
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~-~d~~~~~~~~~~ 455 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH-EDLSLLKEILKR 455 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST-THHHHHHHHHHS
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec-chHHHHHHHHhc
Confidence 88999999999999999964 66665543 344445544443
No 60
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.86 E-value=1.3e-21 Score=181.62 Aligned_cols=124 Identities=23% Similarity=0.335 Sum_probs=76.4
Q ss_pred ccHHHHHHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhC------------CCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 75 DWKFDTLCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKK------------EFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 75 ~~k~~~l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~------------~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
..|+..|.+++.+ ..+.++||||+++++++.+++.|.+. |.....+||+|+..+|..++++|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc
Confidence 4588888888865 35789999999999999999999886 5556677899999999999999999
Q ss_pred -CCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHH
Q psy1621 139 -GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKR 200 (224)
Q Consensus 139 -~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 200 (224)
|+++|||||+++++|||+|++++||+||.|+|+.+|.||+|| ||. ..|.++++++..+..
T Consensus 692 ~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp --CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred cCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999999999999999999999999999999999 998 788899998886543
No 61
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.85 E-value=4.7e-21 Score=171.95 Aligned_cols=128 Identities=17% Similarity=0.244 Sum_probs=115.0
Q ss_pred EEEecCCccHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 68 YIYIEREDWKFDTLCDLYGT--LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~--~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
+++.. ...|..++.+.+.. ..+.++||||+|++.++.+++.|.+.|+.+.++||++...++..+.++|+.| .|+|
T Consensus 418 ~v~~~-~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtI 494 (853)
T 2fsf_A 418 LVYMT-EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTI 494 (853)
T ss_dssp EEESS-HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEE
T ss_pred EEEeC-HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEE
Confidence 34444 44599999988854 3678999999999999999999999999999999999998998888899888 6999
Q ss_pred EcCCcccCCCCCCC-------------------------------------CEEEEeCCCCChhHHHHHHhhccCCCCcc
Q psy1621 146 TTDLLARGIDVQQV-------------------------------------SLVINYDLPSNRENYIHRIGRGGRFGRKG 188 (224)
Q Consensus 146 ~t~~~~~Gvdi~~~-------------------------------------~~vi~~~~p~s~~~~~q~~GR~~R~g~~~ 188 (224)
||+++++|+||+.. .+||+++.|.|...|.|++||+||.|++|
T Consensus 495 ATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G 574 (853)
T 2fsf_A 495 ATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAG 574 (853)
T ss_dssp EESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred ecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCe
Confidence 99999999999874 59999999999999999999999999999
Q ss_pred eEEEEecccc
Q psy1621 189 VAINFVTAED 198 (224)
Q Consensus 189 ~~~~~~~~~~ 198 (224)
.+++|++..|
T Consensus 575 ~s~~fls~eD 584 (853)
T 2fsf_A 575 SSRFYLSMED 584 (853)
T ss_dssp EEEEEEETTS
T ss_pred eEEEEecccH
Confidence 9999998865
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.83 E-value=4.2e-21 Score=185.98 Aligned_cols=200 Identities=17% Similarity=0.291 Sum_probs=136.7
Q ss_pred CcccceeecCCCCcccccccc---------CccCcccccccccccHh--hhhhhhhhHHHhhhhhhhccCcc--cceeEE
Q psy1621 1 MEELQMVCYPPGHGACADVHV---------NVGARIGAGFNADINVE--ACADVDVNAAELRRRVLIVGDSM--TRIRQF 67 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~sATi~~~--~~~~~~~~~~~l~~~~~i~~~~~--~~i~~~ 67 (224)
+||+.|+-. .+|..++.+. .....|.+.+|||++.. +..-+.... ........... -.+++.
T Consensus 213 iDEvH~l~d--~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~---~~~~~~~~~~~RPvpL~~~ 287 (1724)
T 4f92_B 213 LDEIHLLHD--DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDP---AKGLFYFDNSFRPVPLEQT 287 (1724)
T ss_dssp ETTGGGGGS--TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCH---HHHEEECCGGGCSSCEEEE
T ss_pred EecchhcCC--ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCC---CCCeEEECCCCccCccEEE
Confidence 589988743 4776655332 13456899999999642 211111100 01111112111 123444
Q ss_pred EEEecCCc--cHHH----HHHHHhcc-CCCCcEEEEeCchHHHHHHHHHHHhC---------------------------
Q psy1621 68 YIYIERED--WKFD----TLCDLYGT-LSITQAVIFCNTRRKVDWLTESMLKK--------------------------- 113 (224)
Q Consensus 68 ~~~~~~~~--~k~~----~l~~ll~~-~~~~~~iIf~~t~~~~~~l~~~L~~~--------------------------- 113 (224)
+..+.... .+.. .+.+.+.+ ..++++||||+|++.|+.+++.|.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (1724)
T 4f92_B 288 YVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQ 367 (1724)
T ss_dssp CCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSC
T ss_pred EeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcc
Confidence 43333221 1122 22333333 35679999999999999998887531
Q ss_pred ----------CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEE----eC------CCCChhH
Q psy1621 114 ----------EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD------LPSNREN 173 (224)
Q Consensus 114 ----------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~----~~------~p~s~~~ 173 (224)
..+++++||||++++|..+++.|++|.++|||||+.+++|||+|..++||. |+ .|.+..+
T Consensus 368 ~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~ 447 (1724)
T 4f92_B 368 CKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 447 (1724)
T ss_dssp CSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHH
T ss_pred cccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHH
Confidence 235899999999999999999999999999999999999999999999884 44 3568999
Q ss_pred HHHHHhhccCCC--CcceEEEEeccccHHHHHHH
Q psy1621 174 YIHRIGRGGRFG--RKGVAINFVTAEDKRTLKDT 205 (224)
Q Consensus 174 ~~q~~GR~~R~g--~~~~~~~~~~~~~~~~~~~~ 205 (224)
|.||+|||||.| ..|.++++...++...+..+
T Consensus 448 ~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 448 ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp HHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred HHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 999999999988 46999999988877666554
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.83 E-value=3e-20 Score=180.06 Aligned_cols=118 Identities=17% Similarity=0.301 Sum_probs=101.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhC----------------------------------CCeEEEecCCCCHHHHHHHH
Q psy1621 88 LSITQAVIFCNTRRKVDWLTESMLKK----------------------------------EFTVSAMHGDMDQNARDVIM 133 (224)
Q Consensus 88 ~~~~~~iIf~~t~~~~~~l~~~L~~~----------------------------------~~~~~~~~g~~~~~~r~~~~ 133 (224)
..++++||||+|++.|+.++..|... ..+++++||+|++++|..++
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 35789999999999999988766321 23689999999999999999
Q ss_pred HHhhcCCceEEEEcCCcccCCCCCCCCEEEE----eC------CCCChhHHHHHHhhccCCCC--cceEEEEeccccHHH
Q psy1621 134 RQFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD------LPSNRENYIHRIGRGGRFGR--KGVAINFVTAEDKRT 201 (224)
Q Consensus 134 ~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~----~~------~p~s~~~~~q~~GR~~R~g~--~~~~~~~~~~~~~~~ 201 (224)
+.|++|.++|||||+.+++|||+|...+||. |+ .|.+..+|.||+|||||.|. .|.|++++...+...
T Consensus 1233 ~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~ 1312 (1724)
T 4f92_B 1233 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDF 1312 (1724)
T ss_dssp HHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHH
T ss_pred HHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHH
Confidence 9999999999999999999999999988883 22 35789999999999999996 689999998887776
Q ss_pred HHHH
Q psy1621 202 LKDT 205 (224)
Q Consensus 202 ~~~~ 205 (224)
++++
T Consensus 1313 ~~~l 1316 (1724)
T 4f92_B 1313 FKKF 1316 (1724)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 64
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.83 E-value=3e-20 Score=167.18 Aligned_cols=129 Identities=19% Similarity=0.286 Sum_probs=114.3
Q ss_pred EEEecCCccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
+++.. ...|..++.+.+... .+.++||||+|++.++.+++.|.+.|+.+.++||++...++..+.++|+.| .|+|
T Consensus 437 ~v~~t-~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtI 513 (922)
T 1nkt_A 437 LIYKT-EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTV 513 (922)
T ss_dssp EEESC-HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEE
T ss_pred EEEeC-HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEE
Confidence 34444 445999998887643 567999999999999999999999999999999999888888888888877 6999
Q ss_pred EcCCcccCCCCCCC----------------------------------------------------CEEEEeCCCCChhH
Q psy1621 146 TTDLLARGIDVQQV----------------------------------------------------SLVINYDLPSNREN 173 (224)
Q Consensus 146 ~t~~~~~Gvdi~~~----------------------------------------------------~~vi~~~~p~s~~~ 173 (224)
||+++++|+||+.. .+||+++.|.|...
T Consensus 514 ATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~ri 593 (922)
T 1nkt_A 514 ATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRI 593 (922)
T ss_dssp EETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHH
T ss_pred ecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHH
Confidence 99999999999975 49999999999999
Q ss_pred HHHHHhhccCCCCcceEEEEeccccH
Q psy1621 174 YIHRIGRGGRFGRKGVAINFVTAEDK 199 (224)
Q Consensus 174 ~~q~~GR~~R~g~~~~~~~~~~~~~~ 199 (224)
|.|++||+||.|.+|.+++|++..|.
T Consensus 594 y~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 594 DNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHhcccccCCCCeeEEEEechhHH
Confidence 99999999999999999999988654
No 65
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.82 E-value=8.5e-21 Score=164.02 Aligned_cols=118 Identities=19% Similarity=0.346 Sum_probs=106.0
Q ss_pred ccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 75 DWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 75 ~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
..|...+.+++....++++||||++++.++.+++.| .+..+||+++..+|.+++++|++|+.+|||||+++++|+
T Consensus 334 ~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l-----~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gl 408 (472)
T 2fwr_A 334 KNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF-----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 408 (472)
T ss_dssp SHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred hHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHh-----CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCc
Confidence 348889999998878899999999999999999988 366899999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCCChhHHHHHHhhccCCCCc-ce--EEEEeccc
Q psy1621 155 DVQQVSLVINYDLPSNRENYIHRIGRGGRFGRK-GV--AINFVTAE 197 (224)
Q Consensus 155 di~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~-~~--~~~~~~~~ 197 (224)
|+|++++||+++.|+|+..|.|++||+||.|+. +. ++.+++.+
T Consensus 409 dlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 409 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred ccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999999999999999999999999954 34 44455554
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.82 E-value=4.4e-20 Score=163.82 Aligned_cols=97 Identities=16% Similarity=0.343 Sum_probs=87.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC--------eEEEecCCCCHHHHHHHHHHhhcCCce---EEEEcCCcccCCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF--------TVSAMHGDMDQNARDVIMRQFRSGSSR---VLITTDLLARGIDVQ 157 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~--------~~~~~~g~~~~~~r~~~~~~f~~~~~~---ilv~t~~~~~Gvdi~ 157 (224)
..+++||||+++++|+.+++.|.+.+. .+..+||.++ ++|..++++|++|+.. |++||+++++|+|+|
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 457999999999999999999977543 3778999875 4799999999998765 899999999999999
Q ss_pred CCCEEEEeCCCCChhHHHHHHhhccCCCC
Q psy1621 158 QVSLVINYDLPSNRENYIHRIGRGGRFGR 186 (224)
Q Consensus 158 ~~~~vi~~~~p~s~~~~~q~~GR~~R~g~ 186 (224)
++++||+++.|+|+..|.||+||++|.+.
T Consensus 517 ~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 517 TCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred heeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 99999999999999999999999999874
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.82 E-value=9.1e-20 Score=158.61 Aligned_cols=123 Identities=16% Similarity=0.203 Sum_probs=105.2
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHHHhhcC-Cce-EEEEcCC
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKK-EFTVSAMHGDMDQNARDVIMRQFRSG-SSR-VLITTDL 149 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~-~~~-ilv~t~~ 149 (224)
..|+..+.+++.+. .+.++||||+++..++.+++.|.+. +..+..+||+++..+|.+++++|+++ ..+ +|++|++
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~ 403 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 403 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc
Confidence 45888888888654 6789999999999999999999885 89999999999999999999999988 454 8999999
Q ss_pred cccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceE--EEEeccc
Q psy1621 150 LARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVA--INFVTAE 197 (224)
Q Consensus 150 ~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~--~~~~~~~ 197 (224)
+++|+|+|.+++||++|+|||+..|.|++||++|.|+.+.| +.++..+
T Consensus 404 ~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 404 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999999999999999999986654 4455554
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.80 E-value=5.7e-19 Score=158.09 Aligned_cols=123 Identities=16% Similarity=0.224 Sum_probs=108.9
Q ss_pred ccHHHHHHHHhccC---CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCc---eEEEEcC
Q psy1621 75 DWKFDTLCDLYGTL---SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSS---RVLITTD 148 (224)
Q Consensus 75 ~~k~~~l~~ll~~~---~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~---~ilv~t~ 148 (224)
..|+..+..++... .+.++|||++++..++.+...|...++.+..+||+++..+|..++++|++++. .+|++|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 34777777766543 57899999999999999999999999999999999999999999999999866 4899999
Q ss_pred CcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcce--EEEEeccc
Q psy1621 149 LLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV--AINFVTAE 197 (224)
Q Consensus 149 ~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~--~~~~~~~~ 197 (224)
++++|+|++++++||++|+||++..+.|++||++|.|+... ++.++...
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999999999999999999999998654 44555555
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.1e-18 Score=159.81 Aligned_cols=134 Identities=21% Similarity=0.309 Sum_probs=115.9
Q ss_pred ccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCc---eEEEEcCC
Q psy1621 75 DWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSS---RVLITTDL 149 (224)
Q Consensus 75 ~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~---~ilv~t~~ 149 (224)
..|+..|.+++... .++++|||+..+.+++.+...|...++.+..+||+++..+|..++++|+++.. .+|++|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 34888898888765 57899999999999999999999999999999999999999999999998655 49999999
Q ss_pred cccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcce--EEEEeccc--cHHHHHHHHHH
Q psy1621 150 LARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV--AINFVTAE--DKRTLKDTEQF 208 (224)
Q Consensus 150 ~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~--~~~~~~~~--~~~~~~~~~~~ 208 (224)
++.|+|++.+++||++|+|||+..+.|++||++|.|+... ++.+++.+ +...+....+.
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K 697 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKK 697 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997654 55566665 44444444443
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.36 E-value=7.9e-12 Score=116.48 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=85.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCC------------CeE-EEecCC----------C----------CH----------
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKE------------FTV-SAMHGD----------M----------DQ---------- 126 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~------------~~~-~~~~g~----------~----------~~---------- 126 (224)
+.++||||+|++.|..+++.|.+.+ .++ .++||. + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4689999999999999999997653 455 445542 1 22
Q ss_pred -------------------HHHHHHHHHhhcCCceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCc
Q psy1621 127 -------------------NARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRK 187 (224)
Q Consensus 127 -------------------~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~ 187 (224)
.+|..++++|++|+++|||+|+++.+|+|+|.+ +++.+|.|.+...|.|++||++|.+..
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 147889999999999999999999999999999 678899999999999999999998753
Q ss_pred ----ceEEEEe
Q psy1621 188 ----GVAINFV 194 (224)
Q Consensus 188 ----~~~~~~~ 194 (224)
|.++.|+
T Consensus 696 ~K~~G~IVdf~ 706 (1038)
T 2w00_A 696 TKTFGNIVTFR 706 (1038)
T ss_dssp TCCSEEEEESS
T ss_pred CCCcEEEEEcc
Confidence 5555554
No 71
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.02 E-value=2.6e-09 Score=96.80 Aligned_cols=127 Identities=18% Similarity=0.247 Sum_probs=101.1
Q ss_pred EecCCccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHH------------------------------------
Q psy1621 70 YIEREDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESML------------------------------------ 111 (224)
Q Consensus 70 ~~~~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~------------------------------------ 111 (224)
...+...|+.++.+-+.+. .+.|+||+|.|.+.++.+++.|.
T Consensus 421 vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (997)
T 2ipc_A 421 VYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLE 500 (997)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTS
T ss_pred EEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhh
Confidence 3445555898887766543 68899999999999999999998
Q ss_pred ----------------------------------------hCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q psy1621 112 ----------------------------------------KKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151 (224)
Q Consensus 112 ----------------------------------------~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~ 151 (224)
+.++...+++++....|...+-++-+.| .|-|||+++|
T Consensus 501 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAG 578 (997)
T 2ipc_A 501 RPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAG 578 (997)
T ss_dssp SSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTT
T ss_pred ccccccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccC
Confidence 5577778888887655554444434444 6899999999
Q ss_pred cCCCCCCC-------------------C----------------------------------------------------
Q psy1621 152 RGIDVQQV-------------------S---------------------------------------------------- 160 (224)
Q Consensus 152 ~Gvdi~~~-------------------~---------------------------------------------------- 160 (224)
+|.||.-- .
T Consensus 579 RGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~ 658 (997)
T 2ipc_A 579 RGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRAL 658 (997)
T ss_dssp TTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhc
Confidence 99998422 1
Q ss_pred ---EEEEeCCCCChhHHHHHHhhccCCCCcceEEEEecccc
Q psy1621 161 ---LVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAED 198 (224)
Q Consensus 161 ---~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 198 (224)
+||-...+.|...-.|..||+||.|.+|.+.+|++-+|
T Consensus 659 GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 659 GGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp CCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred CCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 78888899999999999999999999999999988765
No 72
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.77 E-value=9.3e-08 Score=77.79 Aligned_cols=121 Identities=18% Similarity=0.186 Sum_probs=89.9
Q ss_pred CccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q psy1621 74 EDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151 (224)
Q Consensus 74 ~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~ 151 (224)
.+.|+..|.+++... .+++++||++..++.+.+..+|...+++...+.|.....+++ . .++...+.+.|.+.+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCC
Confidence 345999999988654 578999999999999999999999999999999985543322 1 234555656677777
Q ss_pred cCCC-----CCCCCEEEEeCCCCChhHH-HHHHhhccCCC----CcceEEEEeccccH
Q psy1621 152 RGID-----VQQVSLVINYDLPSNRENY-IHRIGRGGRFG----RKGVAINFVTAEDK 199 (224)
Q Consensus 152 ~Gvd-----i~~~~~vi~~~~p~s~~~~-~q~~GR~~R~g----~~~~~~~~~~~~~~ 199 (224)
-|+| +..++.||.||..|++..- +|++-|+.|.| +.-.++-+++....
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 7786 6789999999999999885 89999999973 34567777776543
No 73
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.66 E-value=6.9e-08 Score=84.68 Aligned_cols=102 Identities=12% Similarity=0.183 Sum_probs=65.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEE--EcCCcccCCCCCC----CCEE
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI--TTDLLARGIDVQQ----VSLV 162 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv--~t~~~~~Gvdi~~----~~~v 162 (224)
.++.+|||++|.+.++.+++.|.. .. ...+|.. .+|.++++.|+++. .||+ +|..+.+|||+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 567899999999999999988854 23 3556654 45788999998864 5666 7899999999998 7899
Q ss_pred EEeCCCCCh------------------------------hHHHHHHhhccCCCCcceEEEEecc
Q psy1621 163 INYDLPSNR------------------------------ENYIHRIGRGGRFGRKGVAINFVTA 196 (224)
Q Consensus 163 i~~~~p~s~------------------------------~~~~q~~GR~~R~g~~~~~~~~~~~ 196 (224)
|+.+.|... ..+.|.+||+-|...+.-++++++.
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 999988531 2256899999997654334444443
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.46 E-value=1e-06 Score=78.41 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=70.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC--CcccCCCCCC--CCEEEE
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD--LLARGIDVQQ--VSLVIN 164 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~--~~~~Gvdi~~--~~~vi~ 164 (224)
.++.++||++|.+..+.+++.|.. .... ..-+++..++..++++|+ ++..||+++. .+.+|||+|+ .++||+
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEE
Confidence 357799999999999999988862 2222 444555678999999999 8888999975 8999999997 678999
Q ss_pred eCCCCCh-----------------------------hHHHHHHhhccCCCCcceEEEEecc
Q psy1621 165 YDLPSNR-----------------------------ENYIHRIGRGGRFGRKGVAINFVTA 196 (224)
Q Consensus 165 ~~~p~s~-----------------------------~~~~q~~GR~~R~g~~~~~~~~~~~ 196 (224)
.+.|... ....|.+||+-|...+.-++++++.
T Consensus 523 ~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 523 AGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 8888531 1136899999997655444455433
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.20 E-value=2.9e-05 Score=68.18 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=71.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEc--CCcccCCCCC---C--CCE
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITT--DLLARGIDVQ---Q--VSL 161 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t--~~~~~Gvdi~---~--~~~ 161 (224)
.++.++||++|.+..+.+++. .+..+..-..+++. ...++.|+.....||+++ ..+.+|||+| + ++.
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 467999999999999988873 34444333334453 456777864445799998 6999999999 3 678
Q ss_pred EEEeCCCCC---h---------------------------hHHHHHHhhccCCCCcceEEEEeccc
Q psy1621 162 VINYDLPSN---R---------------------------ENYIHRIGRGGRFGRKGVAINFVTAE 197 (224)
Q Consensus 162 vi~~~~p~s---~---------------------------~~~~q~~GR~~R~g~~~~~~~~~~~~ 197 (224)
||+.+.|.. + ....|.+||+-|..++.-++++++..
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 998886652 0 11358899999976554455555443
No 76
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.60 E-value=0.015 Score=53.09 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=74.6
Q ss_pred EEEEecCCccHHHHHHH-HhccC-CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCC
Q psy1621 67 FYIYIEREDWKFDTLCD-LYGTL-SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGS 140 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~-ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~ 140 (224)
.....+....|...... ++... .+.+++|.++|+.-+...++.+.+. ++++..+||+++..++...++.+.+|+
T Consensus 392 ~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~ 471 (780)
T 1gm5_A 392 RLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ 471 (780)
T ss_dssp CEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 34444444556544332 22221 3578999999999888888776553 789999999999999999999999999
Q ss_pred ceEEEEcCC-cccCCCCCCCCEEEEeCC
Q psy1621 141 SRVLITTDL-LARGIDVQQVSLVINYDL 167 (224)
Q Consensus 141 ~~ilv~t~~-~~~Gvdi~~~~~vi~~~~ 167 (224)
.+|+|+|.. +...+++.++..||.-..
T Consensus 472 ~~IvVgT~~ll~~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 472 IDVVIGTHALIQEDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp CCEEEECTTHHHHCCCCSCCCEEEEESC
T ss_pred CCEEEECHHHHhhhhhccCCceEEeccc
Confidence 999999985 445577778887775443
No 77
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.17 E-value=0.016 Score=48.43 Aligned_cols=99 Identities=10% Similarity=0.078 Sum_probs=72.4
Q ss_pred EEEecCCccHHHHHHH-Hhc-cCCCCcEEEEeCchHHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHHHhhcCCce
Q psy1621 68 YIYIEREDWKFDTLCD-LYG-TLSITQAVIFCNTRRKVDWLTESMLK---KEFTVSAMHGDMDQNARDVIMRQFRSGSSR 142 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~-ll~-~~~~~~~iIf~~t~~~~~~l~~~L~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ 142 (224)
....+....|-....- ++. ...+.++||.+++++-+..+++.+.+ .++.+..+||+.+..++....+.+..++.+
T Consensus 40 lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~ 119 (414)
T 3oiy_A 40 TMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH 119 (414)
T ss_dssp ECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCS
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCC
Confidence 3444444556653222 222 13567899999999999999999988 578999999999999999999999999999
Q ss_pred EEEEcCCcc----cCCCCCCCCEEEEeC
Q psy1621 143 VLITTDLLA----RGIDVQQVSLVINYD 166 (224)
Q Consensus 143 ilv~t~~~~----~Gvdi~~~~~vi~~~ 166 (224)
|+|+|+..- .-++...+.+||.-.
T Consensus 120 Iiv~Tp~~l~~~l~~~~~~~~~~iViDE 147 (414)
T 3oiy_A 120 ILVFSTQFVSKNREKLSQKRFDFVFVDD 147 (414)
T ss_dssp EEEEEHHHHHHCHHHHTTCCCSEEEESC
T ss_pred EEEECHHHHHHHHHHhccccccEEEEeC
Confidence 999998421 114455677776543
No 78
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.29 E-value=0.13 Score=38.75 Aligned_cols=97 Identities=9% Similarity=0.169 Sum_probs=64.5
Q ss_pred EEEEecCCccHHHHH-HHHhccC----CCCcEEEEeCchHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHh
Q psy1621 67 FYIYIEREDWKFDTL-CDLYGTL----SITQAVIFCNTRRKVDWLTESMLKK-----EFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l-~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.....+....|-... .-++... .+.++||.+++++-+..+++.+.+. +..+..++|+.+..+... .+
T Consensus 54 ~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~ 130 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VL 130 (220)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HH
T ss_pred EEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HH
Confidence 444555555566433 2233222 2348999999999999988887664 678999999988765543 34
Q ss_pred hcCCceEEEEcCC------cccCCCCCCCCEEEEeC
Q psy1621 137 RSGSSRVLITTDL------LARGIDVQQVSLVINYD 166 (224)
Q Consensus 137 ~~~~~~ilv~t~~------~~~Gvdi~~~~~vi~~~ 166 (224)
.++...|+|+|+. -...+++..+..+|.-+
T Consensus 131 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 131 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 5566789999973 12345677777777543
No 79
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=95.14 E-value=0.063 Score=50.86 Aligned_cols=100 Identities=11% Similarity=0.085 Sum_probs=74.5
Q ss_pred EEEEecCCccHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 67 FYIYIEREDWKFDTLCDLYGT--LSITQAVIFCNTRRKVDWLTESMLK---KEFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~--~~~~~~iIf~~t~~~~~~l~~~L~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
.....+....|-....-.+.. ..+.++||.++|++-+..+++.+.+ .++.+..+||+.+..++...++.+.+|..
T Consensus 96 vlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~ 175 (1104)
T 4ddu_A 96 FTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDY 175 (1104)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCC
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 445555555676644333221 3567899999999999999999988 46789999999999899999999999999
Q ss_pred eEEEEcCCcc-c---CCCCCCCCEEEEeC
Q psy1621 142 RVLITTDLLA-R---GIDVQQVSLVINYD 166 (224)
Q Consensus 142 ~ilv~t~~~~-~---Gvdi~~~~~vi~~~ 166 (224)
+|+|+|+-.- . -+++.++.+||.-.
T Consensus 176 ~IlV~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 176 HILVFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp SEEEEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred CEEEECHHHHHHHHHhhcccCcCEEEEeC
Confidence 9999997321 1 14456777777544
No 80
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.65 E-value=0.23 Score=47.27 Aligned_cols=99 Identities=11% Similarity=0.101 Sum_probs=73.6
Q ss_pred EEEEEecCCccHHHHHHH-Hhc-cCCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 66 QFYIYIEREDWKFDTLCD-LYG-TLSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~l~~-ll~-~~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
......+....|...... .+. ...+.+++|.++|+.-+...++.+.+. +.++..++|..+..++...++.+.+|
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g 705 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 705 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC
Confidence 445555555557654332 211 234679999999999998888887643 57899999999999999999999999
Q ss_pred CceEEEEcCC-cccCCCCCCCCEEEE
Q psy1621 140 SSRVLITTDL-LARGIDVQQVSLVIN 164 (224)
Q Consensus 140 ~~~ilv~t~~-~~~Gvdi~~~~~vi~ 164 (224)
+.+|+|+|.. +...+++.++..||.
T Consensus 706 ~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 706 KIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCCEEEECHHHHhCCccccccceEEE
Confidence 9999999964 445577777776664
No 81
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.42 E-value=0.12 Score=44.76 Aligned_cols=81 Identities=9% Similarity=0.017 Sum_probs=64.6
Q ss_pred EEEEecCCccHHHH-HHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
.++..+....|-.. +.-.+. ..+.+||.+++++-+....+.|.+.++.+..+||+.+..++..+...+..+..+|++
T Consensus 43 ~lv~apTGsGKTl~~~lp~l~--~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv 120 (523)
T 1oyw_A 43 CLVVMPTGGGKSLCYQIPALL--LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY 120 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHH--SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEECCCCcHHHHHHHHHHHH--hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 45555555556542 222222 246899999999999999999999999999999999999999999999999999999
Q ss_pred EcCC
Q psy1621 146 TTDL 149 (224)
Q Consensus 146 ~t~~ 149 (224)
+|+.
T Consensus 121 ~Tpe 124 (523)
T 1oyw_A 121 IAPE 124 (523)
T ss_dssp ECHH
T ss_pred ECHH
Confidence 9973
No 82
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.09 E-value=0.22 Score=37.87 Aligned_cols=93 Identities=10% Similarity=0.032 Sum_probs=62.6
Q ss_pred EEEEecCCccHHHH-HHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHh
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKK-----EFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.....+....|-.. +.-++.. ..+.++||.+++++-+..+++.+.+. +..+..++|+.+..++...+
T Consensus 64 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--- 140 (230)
T 2oxc_A 64 LIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL--- 140 (230)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---
Confidence 45555555567654 3333322 24568999999999999998888764 57889999998876654433
Q ss_pred hcCCceEEEEcCC-----c-ccCCCCCCCCEEEE
Q psy1621 137 RSGSSRVLITTDL-----L-ARGIDVQQVSLVIN 164 (224)
Q Consensus 137 ~~~~~~ilv~t~~-----~-~~Gvdi~~~~~vi~ 164 (224)
....|+|+|+. + ...+++..+.++|.
T Consensus 141 --~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 141 --KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp --TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred --cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 24689999973 1 23456666777664
No 83
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=94.04 E-value=0.14 Score=45.22 Aligned_cols=81 Identities=5% Similarity=0.037 Sum_probs=64.1
Q ss_pred EEEEecCCccHHHH-HHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHh--hcCCceE
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQF--RSGSSRV 143 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f--~~~~~~i 143 (224)
.++..+....|-.. +.-.+. ..+.+||.+++++-+....+.|.+.++.+..++|+.+..++..++..+ ..+..+|
T Consensus 62 ~lv~~pTGsGKTl~~~lpal~--~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~I 139 (591)
T 2v1x_A 62 VFLVMPTGGGKSLCYQLPALC--SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKL 139 (591)
T ss_dssp EEEECCTTSCTTHHHHHHHHT--SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCE
T ss_pred EEEEECCCChHHHHHHHHHHH--cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCE
Confidence 45555555556542 223332 356899999999999999999999999999999999999999888888 5678899
Q ss_pred EEEcCC
Q psy1621 144 LITTDL 149 (224)
Q Consensus 144 lv~t~~ 149 (224)
+++|+.
T Consensus 140 lv~Tpe 145 (591)
T 2v1x_A 140 IYVTPE 145 (591)
T ss_dssp EEECHH
T ss_pred EEEChh
Confidence 999983
No 84
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.00 E-value=0.49 Score=36.51 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=63.1
Q ss_pred EEEEecCCccHHHHH-HHH----hccCCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 67 FYIYIEREDWKFDTL-CDL----YGTLSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l-~~l----l~~~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
.+...+....|-... .-+ .....+.++||.+++++-+..+++.+.+. +..+..++|+.+..+....+
T Consensus 83 ~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 158 (249)
T 3ber_A 83 IIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---- 158 (249)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----
T ss_pred EEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----
Confidence 445555555576542 222 22224567999999999998888877654 78899999998865544332
Q ss_pred cCCceEEEEcCC-----c--ccCCCCCCCCEEEEeC
Q psy1621 138 SGSSRVLITTDL-----L--ARGIDVQQVSLVINYD 166 (224)
Q Consensus 138 ~~~~~ilv~t~~-----~--~~Gvdi~~~~~vi~~~ 166 (224)
.+...|+|+|+. + ..++++..++++|.-.
T Consensus 159 ~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 159 AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 245789999963 1 2456777788777533
No 85
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.94 E-value=0.38 Score=36.84 Aligned_cols=95 Identities=8% Similarity=0.025 Sum_probs=62.6
Q ss_pred EEEEecCCccHHHH-HHHHhcc---------CCCCcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHH
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGT---------LSITQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVI 132 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~---------~~~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~ 132 (224)
.+...+....|-.. +.-++.. ..+.++||.++|++-+..+++.+.+ .+..+..++|+.+..+....
T Consensus 69 ~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (242)
T 3fe2_A 69 MVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 148 (242)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred EEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH
Confidence 45555555557544 3222211 1356799999999998888777655 37889999999988765544
Q ss_pred HHHhhcCCceEEEEcCC-----c-ccCCCCCCCCEEEEe
Q psy1621 133 MRQFRSGSSRVLITTDL-----L-ARGIDVQQVSLVINY 165 (224)
Q Consensus 133 ~~~f~~~~~~ilv~t~~-----~-~~Gvdi~~~~~vi~~ 165 (224)
+.. ..+|+|+|+. + ...+++.++.++|.-
T Consensus 149 ~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 149 LER----GVEICIATPGRLIDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp HHH----CCSEEEECHHHHHHHHHHTSCCCTTCCEEEET
T ss_pred hcC----CCCEEEECHHHHHHHHHcCCCCcccccEEEEe
Confidence 432 3679999972 2 234567778877643
No 86
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.84 E-value=0.72 Score=37.62 Aligned_cols=95 Identities=9% Similarity=0.172 Sum_probs=64.1
Q ss_pred EEEEecCCccHHHHH-HHHhccC----CCCcEEEEeCchHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHh
Q psy1621 67 FYIYIEREDWKFDTL-CDLYGTL----SITQAVIFCNTRRKVDWLTESMLKK-----EFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l-~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.++..+....|-... .-++... .+.++||.++++.-++.+++.+.+. +..+..++|+.+..+... .+
T Consensus 48 ~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~ 124 (391)
T 1xti_A 48 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VL 124 (391)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HH
T ss_pred EEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HH
Confidence 455555555576533 3333222 3558999999999999988887664 678999999988765543 34
Q ss_pred hcCCceEEEEcCCc------ccCCCCCCCCEEEE
Q psy1621 137 RSGSSRVLITTDLL------ARGIDVQQVSLVIN 164 (224)
Q Consensus 137 ~~~~~~ilv~t~~~------~~Gvdi~~~~~vi~ 164 (224)
.++...|+|+|+.. ...+++..+..||.
T Consensus 125 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 125 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred hcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 45667899999731 23456677777764
No 87
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.45 E-value=0.83 Score=33.69 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=60.5
Q ss_pred EEEEecCCccHHHH-HHHHhccC----CCCcEEEEeCchHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHh
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKK-----EFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.....+....|-.. +.-++... .+.++||.+++++-+..+++.+.+. +..+..++|+.+..+.... +
T Consensus 43 ~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~ 119 (206)
T 1vec_A 43 ILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L 119 (206)
T ss_dssp EEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T
T ss_pred EEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c
Confidence 44555555556643 33333322 3457999999999999888887653 5678899999876544322 2
Q ss_pred hcCCceEEEEcCC-----ccc-CCCCCCCCEEEE
Q psy1621 137 RSGSSRVLITTDL-----LAR-GIDVQQVSLVIN 164 (224)
Q Consensus 137 ~~~~~~ilv~t~~-----~~~-Gvdi~~~~~vi~ 164 (224)
.+...|+|+|+. +.. .+++.++.++|.
T Consensus 120 -~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 120 -DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp -TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred -CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 345789999972 222 345667777764
No 88
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=91.77 E-value=0.64 Score=34.88 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=56.7
Q ss_pred EEEEecCCccHHHH-HHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
.++..+....|-.. +.-++.. ..+.++||.+++++-+..+++.+.+. +..+..++|+.+..+.... +.
T Consensus 54 ~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~ 130 (224)
T 1qde_A 54 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR 130 (224)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC
Confidence 45555665667755 4444432 24568999999999999888877653 6788889998765543322 22
Q ss_pred cCCceEEEEcCC------cccCCCCCCCCEEEEe
Q psy1621 138 SGSSRVLITTDL------LARGIDVQQVSLVINY 165 (224)
Q Consensus 138 ~~~~~ilv~t~~------~~~Gvdi~~~~~vi~~ 165 (224)
..+|+|+|+. ....+++..+..||.-
T Consensus 131 --~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViD 162 (224)
T 1qde_A 131 --DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 162 (224)
T ss_dssp --TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred --CCCEEEECHHHHHHHHHhCCcchhhCcEEEEc
Confidence 2689999973 1334566677777643
No 89
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.72 E-value=2.9 Score=30.62 Aligned_cols=96 Identities=11% Similarity=0.064 Sum_probs=62.3
Q ss_pred EEEEecCCccHHHH-HHHHhcc-------CCCCcEEEEeCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHh
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGT-------LSITQAVIFCNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~-------~~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.....+....|... +.-++.. ..+.++||.+++++-+..+++.+.+. ..++..++|+.+.......+.
T Consensus 41 ~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 118 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL-- 118 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH--
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh--
Confidence 44555555557654 3333332 23568999999999999999988776 467888999887654433322
Q ss_pred hcCCceEEEEcCC-----c-ccCCCCCCCCEEEEeC
Q psy1621 137 RSGSSRVLITTDL-----L-ARGIDVQQVSLVINYD 166 (224)
Q Consensus 137 ~~~~~~ilv~t~~-----~-~~Gvdi~~~~~vi~~~ 166 (224)
....|+|+|+. + ...+++..+..+|.-+
T Consensus 119 --~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 119 --RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp --HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred --CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 24679999962 1 2245667777777533
No 90
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=91.56 E-value=0.63 Score=35.13 Aligned_cols=73 Identities=10% Similarity=0.130 Sum_probs=48.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC---CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC------cccCCCCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK---EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL------LARGIDVQQV 159 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~------~~~Gvdi~~~ 159 (224)
.+.++||.+++++-+..+++.+.+. +..+..++|+.+..++... +. ...+|+|+|+. ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999999988774 6788889998765543322 22 34789999962 2334667778
Q ss_pred CEEEEe
Q psy1621 160 SLVINY 165 (224)
Q Consensus 160 ~~vi~~ 165 (224)
+++|.-
T Consensus 169 ~~lViD 174 (228)
T 3iuy_A 169 TYLVID 174 (228)
T ss_dssp CEEEEC
T ss_pred eEEEEE
Confidence 877653
No 91
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.79 E-value=0.9 Score=34.59 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=55.5
Q ss_pred EEEEecCCccHHHH-HHHHhccC----CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
.++..+....|-.. +.-++... .+.++||.+++++-+..+++.+.+. +..+..++|+.+... ..+.+.
T Consensus 70 ~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~ 146 (237)
T 3bor_A 70 VIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQ 146 (237)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC---------------
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHh
Confidence 44444555556644 33333332 4568999999999999998888764 467778888765432 234455
Q ss_pred cCCceEEEEcC-----Cccc-CCCCCCCCEEEEe
Q psy1621 138 SGSSRVLITTD-----LLAR-GIDVQQVSLVINY 165 (224)
Q Consensus 138 ~~~~~ilv~t~-----~~~~-Gvdi~~~~~vi~~ 165 (224)
.+...|+|+|+ .+.. .+++..+..||.-
T Consensus 147 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViD 180 (237)
T 3bor_A 147 AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD 180 (237)
T ss_dssp -CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE
T ss_pred cCCCCEEEECHHHHHHHHHhCCcCcccCcEEEEC
Confidence 66688999995 2223 3566677777653
No 92
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.73 E-value=0.022 Score=44.02 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=33.7
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhh
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLI 56 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i 56 (224)
+||++.+..+........++-. +...|++++|||+++++. .+....+++|+.+
T Consensus 182 iDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~---~~~~~~l~~~~~i 235 (242)
T 3fe2_A 182 LDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR---QLAEDFLKDYIHI 235 (242)
T ss_dssp ETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHH---HHHHHHCSSCEEE
T ss_pred EeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHH---HHHHHHCCCCEEE
Confidence 4888877765433333333322 357899999999999875 3444666666544
No 93
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=90.57 E-value=0.58 Score=31.13 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCC
Q psy1621 81 LCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 81 l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
+.+.+... +..++++||.+-..+...+..|.+.|+++..+.||+.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 44444444 4568999999999999999999999999999999853
No 94
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=90.25 E-value=1.2 Score=34.23 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=50.0
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC------cccCCCCCCCC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL------LARGIDVQQVS 160 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~------~~~Gvdi~~~~ 160 (224)
.++||.+++++-+..+++.+.+. +..+..++|+.+..+....+ .....|+|+|+. ....+++..+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 58999999999999888877654 56788899988765433222 245689999972 12235677777
Q ss_pred EEEEe
Q psy1621 161 LVINY 165 (224)
Q Consensus 161 ~vi~~ 165 (224)
++|.-
T Consensus 177 ~lViD 181 (253)
T 1wrb_A 177 YIVLD 181 (253)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77643
No 95
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=89.59 E-value=2.5 Score=35.06 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=63.1
Q ss_pred EEEEecCCccHHHHHHHHhccC---CCCcEEEEeCchHHHHHHHHHHHhC-CC---eEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 67 FYIYIEREDWKFDTLCDLYGTL---SITQAVIFCNTRRKVDWLTESMLKK-EF---TVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~~---~~~~~iIf~~t~~~~~~l~~~L~~~-~~---~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
.....+....|-......+... .+.++||.|+++.-+..+++.+.+. +. .+..+||+....++.....
T Consensus 26 ~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----- 100 (494)
T 1wp9_A 26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA----- 100 (494)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----
Confidence 3444555555765554443332 5679999999999999998888775 55 8999999998877655443
Q ss_pred CceEEEEcCCc------ccCCCCCCCCEEEE
Q psy1621 140 SSRVLITTDLL------ARGIDVQQVSLVIN 164 (224)
Q Consensus 140 ~~~ilv~t~~~------~~Gvdi~~~~~vi~ 164 (224)
...|+|+|.-. ...++....+.||.
T Consensus 101 ~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 101 RAKVIVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp HCSEEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCEEEecHHHHHHHHhcCCcchhhceEEEE
Confidence 34789998631 12345666676664
No 96
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=89.18 E-value=1.9 Score=35.06 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=60.7
Q ss_pred EEEEecCCccHHHH-HHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
.++..+....|-.. +.-++.. ..+.++||.++++.-+..+++.+.+. +..+..++|+.+..+....+.
T Consensus 61 ~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 137 (394)
T 1fuu_A 61 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR--- 137 (394)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH---
T ss_pred EEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC---
Confidence 44445555557644 3333322 24568999999999998888877653 678899999988766555443
Q ss_pred cCCceEEEEcCC------cccCCCCCCCCEEEE
Q psy1621 138 SGSSRVLITTDL------LARGIDVQQVSLVIN 164 (224)
Q Consensus 138 ~~~~~ilv~t~~------~~~Gvdi~~~~~vi~ 164 (224)
...|+|+|+. ....+++...++||.
T Consensus 138 --~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 138 --DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp --HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred --CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 3579999862 122345556676664
No 97
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=89.11 E-value=5.8 Score=31.61 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=61.0
Q ss_pred EEEEEecCCccHHHHHH-HHh---ccCCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 66 QFYIYIEREDWKFDTLC-DLY---GTLSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~l~-~ll---~~~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
..+...+....|-.... -++ ...++.++||.++++.-++.+++.+.+. +..+..++|+....+....+.
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--- 122 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK--- 122 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH---
T ss_pred CEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC---
Confidence 34555555556765432 222 2234678999999999999888888763 567888999887665443332
Q ss_pred cCCceEEEEcCC-----c-ccCCCCCCCCEEEE
Q psy1621 138 SGSSRVLITTDL-----L-ARGIDVQQVSLVIN 164 (224)
Q Consensus 138 ~~~~~ilv~t~~-----~-~~Gvdi~~~~~vi~ 164 (224)
..+|+|+|+. . ...+++...+.||.
T Consensus 123 --~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 123 --NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp --TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred --CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 4579999963 1 12345666776664
No 98
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=88.92 E-value=0.72 Score=43.53 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=65.6
Q ss_pred EEEEecCCccHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHHHhC----CC----eEEEecCCCCHHHHHHHHHHh
Q psy1621 67 FYIYIEREDWKFDTLCDLYGT--LSITQAVIFCNTRRKVDWLTESMLKK----EF----TVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~--~~~~~~iIf~~t~~~~~~l~~~L~~~----~~----~~~~~~g~~~~~~r~~~~~~f 136 (224)
.+...+....|-..+.-++.. ..+.++||.++|++-+..+++.+.+. +. .+..+||+.+..++....+.+
T Consensus 74 vlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l 153 (1054)
T 1gku_B 74 FAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNL 153 (1054)
T ss_dssp EECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSG
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhc
Confidence 344444445566443333322 24678999999999999888887653 55 789999999998888788888
Q ss_pred hcCCceEEEEcCC-cccCCC-CCCCCEEEE
Q psy1621 137 RSGSSRVLITTDL-LARGID-VQQVSLVIN 164 (224)
Q Consensus 137 ~~~~~~ilv~t~~-~~~Gvd-i~~~~~vi~ 164 (224)
++ .+|+|+|+. +..-+. +..++++|.
T Consensus 154 ~~--~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 154 RN--FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp GG--CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred cC--CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 77 889999972 111111 456666664
No 99
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=88.84 E-value=0.86 Score=34.54 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=58.4
Q ss_pred EEEEecCCccHHHHH-H---HHhcc-----CCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHH
Q psy1621 67 FYIYIEREDWKFDTL-C---DLYGT-----LSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIM 133 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l-~---~ll~~-----~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~ 133 (224)
.+...+....|-... . ..+.. ..+.++||.+++++-+..+++.+.+. +..+..++|+.+..+....+
T Consensus 65 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 144 (236)
T 2pl3_A 65 VLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 144 (236)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC
Confidence 455555555576532 2 22211 23568999999999999998888764 47888999987655443322
Q ss_pred HHhhcCCceEEEEcCC-----ccc--CCCCCCCCEEEE
Q psy1621 134 RQFRSGSSRVLITTDL-----LAR--GIDVQQVSLVIN 164 (224)
Q Consensus 134 ~~f~~~~~~ilv~t~~-----~~~--Gvdi~~~~~vi~ 164 (224)
+..+|+|+|+. +.. .+++.++.++|.
T Consensus 145 -----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 145 -----NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp -----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred -----CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 35689999972 112 356667777664
No 100
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=88.64 E-value=0.03 Score=43.43 Aligned_cols=53 Identities=13% Similarity=-0.003 Sum_probs=32.6
Q ss_pred CcccceeecCCCCccccccc-----cCccCcccccccccccHhhhhhhhhhHHHhhhhhhh
Q psy1621 1 MEELQMVCYPPGHGACADVH-----VNVGARIGAGFNADINVEACADVDVNAAELRRRVLI 56 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i 56 (224)
+||++.+....-......++ |.....|.+++|||+++++. .+....+++|..+
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~---~~~~~~l~~~~~i 237 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQ---KLAADFLYNYIFM 237 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHH---HHHHHHCSSCEEE
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHH---HHHHHHcCCCEEE
Confidence 48888776554333332222 22337899999999999864 3444666665544
No 101
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=88.23 E-value=0.038 Score=41.85 Aligned_cols=53 Identities=8% Similarity=-0.040 Sum_probs=33.0
Q ss_pred CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhh
Q psy1621 1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLI 56 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i 56 (224)
+||++.+..+.-......++.. +...|.+++|||++.++.. +....+++|..+
T Consensus 156 iDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~---~~~~~~~~p~~~ 209 (219)
T 1q0u_A 156 VDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKP---FLKKYMENPTFV 209 (219)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHH---HHHHHCSSCEEE
T ss_pred EcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHH---HHHHHcCCCeEE
Confidence 4888877655433333333322 3467899999999987643 444667776554
No 102
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.12 E-value=2.1 Score=35.78 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=62.2
Q ss_pred EEEEEecCCccHHHH-HH----HHhccC-----CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHH
Q psy1621 66 QFYIYIEREDWKFDT-LC----DLYGTL-----SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDV 131 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~-l~----~ll~~~-----~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~ 131 (224)
..+...+....|-.+ +. .++... .+.++||.++|++-+..+++.+.+. +..+..++|+.+..+...
T Consensus 95 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 174 (434)
T 2db3_A 95 DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE 174 (434)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH
T ss_pred CEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH
Confidence 345555555557653 22 222221 2458999999999999998888764 467888999988765443
Q ss_pred HHHHhhcCCceEEEEcCC-----ccc-CCCCCCCCEEEE
Q psy1621 132 IMRQFRSGSSRVLITTDL-----LAR-GIDVQQVSLVIN 164 (224)
Q Consensus 132 ~~~~f~~~~~~ilv~t~~-----~~~-Gvdi~~~~~vi~ 164 (224)
.+ .....|+|+|+- +.. .+++..++++|.
T Consensus 175 ~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 175 CI----TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp HH----TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred Hh----hcCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 32 235789999972 222 356677777774
No 103
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=87.64 E-value=4.1 Score=33.34 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=49.9
Q ss_pred CcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-----c-ccCCCCCCCC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL-----L-ARGIDVQQVS 160 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~-----~-~~Gvdi~~~~ 160 (224)
.++||.++|++-+..+++.+.+ .+..+..++|+.+..+.... +. ...+|+|+|+. + ...+++..+.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD---LE-RGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH---HT-TCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH---hh-CCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4699999999999998888765 36788999999887654332 22 34689999972 1 2235566777
Q ss_pred EEEE
Q psy1621 161 LVIN 164 (224)
Q Consensus 161 ~vi~ 164 (224)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 104
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=87.45 E-value=1.2 Score=35.41 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=59.9
Q ss_pred EEEEEecCCccHHHH-HHHHhccC----CCCcEEEEeCchHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHH
Q psy1621 66 QFYIYIEREDWKFDT-LCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKK-----EFTVSAMHGDMDQNARDVIMRQ 135 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~-l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~ 135 (224)
..+...+....|..+ +.-++... .+.++||.++|++-+..+++.+... +..+..++|+......
T Consensus 133 ~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 206 (300)
T 3fmo_B 133 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------ 206 (300)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT------
T ss_pred eEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh------
Confidence 345555555557543 44444433 3447999999999999988877653 4677778877653221
Q ss_pred hhcCCceEEEEcCCc------c-cCCCCCCCCEEEEeC
Q psy1621 136 FRSGSSRVLITTDLL------A-RGIDVQQVSLVINYD 166 (224)
Q Consensus 136 f~~~~~~ilv~t~~~------~-~Gvdi~~~~~vi~~~ 166 (224)
......|+|+|+-- . ..+++..+.++|.-.
T Consensus 207 -~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 207 -QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp -CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred -hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 13455799999732 2 356777888877533
No 105
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=87.41 E-value=0.69 Score=30.18 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~ 124 (224)
+..++++||.+-..+...+..|.+.|+++..+.||+
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 356899999999999999999999999999999984
No 106
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=87.36 E-value=3.2 Score=32.12 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=51.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC------Cc-ccCCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD------LL-ARGIDVQ 157 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~------~~-~~Gvdi~ 157 (224)
.+.++||.++|++-+..+++.+++. +..+..++|+......... +..+ .+|+|+|+ .. ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3567999999999999988888763 5678889998876554433 3333 78999995 11 2246777
Q ss_pred CCCEEEE
Q psy1621 158 QVSLVIN 164 (224)
Q Consensus 158 ~~~~vi~ 164 (224)
.+..||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7887764
No 107
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=86.43 E-value=0.67 Score=30.39 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=31.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~ 124 (224)
+..++++||.+-..+...+..|.+.|+++..+.||+
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 356899999998889999999999999999999984
No 108
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=86.29 E-value=0.98 Score=38.66 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=58.4
Q ss_pred EEEEecCCccHHHHH----HHHhccCC---CCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHH
Q psy1621 67 FYIYIEREDWKFDTL----CDLYGTLS---ITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQ 135 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l----~~ll~~~~---~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~ 135 (224)
.....+....|-... ...+...+ +.++||.+++++-+..+++.+.+. ++.+..++|+.+..++...+.
T Consensus 22 ~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 100 (555)
T 3tbk_A 22 TIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII- 100 (555)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH-
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh-
Confidence 344445545565442 22222222 678999999999888888777664 889999999986554322221
Q ss_pred hhcCCceEEEEcCC-----cccC-C-CCCCCCEEEE
Q psy1621 136 FRSGSSRVLITTDL-----LARG-I-DVQQVSLVIN 164 (224)
Q Consensus 136 f~~~~~~ilv~t~~-----~~~G-v-di~~~~~vi~ 164 (224)
+...|+|+|+- +..+ + ++..+++||.
T Consensus 101 ---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 101 ---EDNDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp ---HHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred ---cCCCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 13579999873 2222 3 4556677664
No 109
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=86.27 E-value=1.4 Score=37.84 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=56.3
Q ss_pred EEEEecCCccHHHHHH----HHhccCC---CCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHH
Q psy1621 67 FYIYIEREDWKFDTLC----DLYGTLS---ITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQ 135 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~----~ll~~~~---~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~ 135 (224)
..+..+....|-.... ..+...+ +.++||.+++++-+..+++.+.+. ++.+..+||+.+..++...+.
T Consensus 25 ~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 103 (556)
T 4a2p_A 25 ALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI- 103 (556)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH-
T ss_pred EEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh-
Confidence 3444454455654322 2232222 678999999999988888877664 889999999986655432221
Q ss_pred hhcCCceEEEEcCC-----cccC-C-CCCCCCEEEE
Q psy1621 136 FRSGSSRVLITTDL-----LARG-I-DVQQVSLVIN 164 (224)
Q Consensus 136 f~~~~~~ilv~t~~-----~~~G-v-di~~~~~vi~ 164 (224)
....|+|+|+. +..+ + ++..+++||.
T Consensus 104 ---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 104 ---EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp ---HHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred ---CCCCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 13579999973 2222 3 5666777764
No 110
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=86.24 E-value=1.7 Score=39.54 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=56.3
Q ss_pred EEEEecCCccHHHHHH----HHhccCC---CCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHH
Q psy1621 67 FYIYIEREDWKFDTLC----DLYGTLS---ITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQ 135 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~----~ll~~~~---~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~ 135 (224)
.++..+....|..... ..+...+ +.++||.++++.-+..+++.+.+. ++.+..+||+.+...+...+.
T Consensus 266 ~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~- 344 (797)
T 4a2q_A 266 ALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI- 344 (797)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH-
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh-
Confidence 4445555555664432 2222222 678999999999998888877664 889999999987655432221
Q ss_pred hhcCCceEEEEcCC-----cccC-C-CCCCCCEEEE
Q psy1621 136 FRSGSSRVLITTDL-----LARG-I-DVQQVSLVIN 164 (224)
Q Consensus 136 f~~~~~~ilv~t~~-----~~~G-v-di~~~~~vi~ 164 (224)
+...|+|+|+- +..+ + ++.++++||.
T Consensus 345 ---~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 345 ---EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp ---HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred ---CCCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 24679999963 1222 3 4556677664
No 111
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=86.23 E-value=0.64 Score=34.85 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=58.2
Q ss_pred EEEEecCCccHHHH-HHHHhccC----CCCcEEEEeCchHHHHHHHHHHHhC--------CCeEEEecCCCCHHHHHHHH
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKK--------EFTVSAMHGDMDQNARDVIM 133 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~--------~~~~~~~~g~~~~~~r~~~~ 133 (224)
.....+....|-.. +.-++... .+.++||.++|++-+..+++.+.+. +..+..++|+.+..+..
T Consensus 44 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--- 120 (219)
T 1q0u_A 44 MVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL--- 120 (219)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---
T ss_pred EEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---
Confidence 44555555556654 33333322 3568999999999998888877553 56788889987543321
Q ss_pred HHhhcCCceEEEEcCC-----ccc-CCCCCCCCEEEE
Q psy1621 134 RQFRSGSSRVLITTDL-----LAR-GIDVQQVSLVIN 164 (224)
Q Consensus 134 ~~f~~~~~~ilv~t~~-----~~~-Gvdi~~~~~vi~ 164 (224)
+.+ .....|+|+|+. +.. .+++..+..+|.
T Consensus 121 ~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 121 EKL-NVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp CCC-SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred HHc-CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 111 235679999962 222 355666777664
No 112
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=85.96 E-value=0.95 Score=30.92 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=31.0
Q ss_pred CcEEEEe-CchHHHHHHHHHHHhCCCeEEEecCCCCH
Q psy1621 91 TQAVIFC-NTRRKVDWLTESMLKKEFTVSAMHGDMDQ 126 (224)
Q Consensus 91 ~~~iIf~-~t~~~~~~l~~~L~~~~~~~~~~~g~~~~ 126 (224)
.++++|| .+-..+...+..|+..|+++..+.||+..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57778889999999999999999999643
No 113
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=85.36 E-value=0.93 Score=29.15 Aligned_cols=35 Identities=6% Similarity=0.199 Sum_probs=31.0
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
.++++||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999988888888864
No 114
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=84.86 E-value=0.9 Score=30.06 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=31.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~ 124 (224)
+..+++++|.+-..+...+..|.+.|+....+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 356899999998888999999999999988888884
No 115
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=84.78 E-value=5 Score=32.78 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=61.2
Q ss_pred EEEEecCCccHHHH-HHHHhccC----CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
.++..+....|-.. +.-++... .+.++||.++++.-+..+++.+.+. +..+..++|+...... .+.+.
T Consensus 80 ~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 156 (414)
T 3eiq_A 80 VIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQ 156 (414)
T ss_dssp EEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHT
T ss_pred EEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHh
Confidence 34444555556644 33333322 4678999999999998888888664 5677888888765433 34556
Q ss_pred cCCceEEEEcCC-----c-ccCCCCCCCCEEEE
Q psy1621 138 SGSSRVLITTDL-----L-ARGIDVQQVSLVIN 164 (224)
Q Consensus 138 ~~~~~ilv~t~~-----~-~~Gvdi~~~~~vi~ 164 (224)
.+...|+|+|+. + ...++...+.+||.
T Consensus 157 ~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 157 MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp TTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred cCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 677889999962 2 22345556666664
No 116
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=84.71 E-value=1.1 Score=30.48 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=34.4
Q ss_pred HHHHhccC-CCCcEEEEeCchHH--HHHHHHHHHhCCCeEEEecCCC
Q psy1621 81 LCDLYGTL-SITQAVIFCNTRRK--VDWLTESMLKKEFTVSAMHGDM 124 (224)
Q Consensus 81 l~~ll~~~-~~~~~iIf~~t~~~--~~~l~~~L~~~~~~~~~~~g~~ 124 (224)
+.+.+..+ +..+++++|.+-.. +...+..|.+.|+.+..+.||+
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 44445555 45689999998776 7889999999999988888985
No 117
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=84.65 E-value=5 Score=32.67 Aligned_cols=96 Identities=14% Similarity=0.078 Sum_probs=61.9
Q ss_pred EEEEecCCccHHHH-HHHHhccC----CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
.+...+....|-.. +.-++... .+.++||.++++.-+..+++.+.+. +..+..++|+....+.... .
T Consensus 61 ~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~ 136 (400)
T 1s2m_A 61 ILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----L 136 (400)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----T
T ss_pred EEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----h
Confidence 45555555567653 33333222 4568999999999998888887654 6788889998876543221 2
Q ss_pred cCCceEEEEcCC-----c-ccCCCCCCCCEEEEeC
Q psy1621 138 SGSSRVLITTDL-----L-ARGIDVQQVSLVINYD 166 (224)
Q Consensus 138 ~~~~~ilv~t~~-----~-~~Gvdi~~~~~vi~~~ 166 (224)
.+...|+|+|+. + ....++.++++||.-.
T Consensus 137 ~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 137 NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 356789999962 2 2235566777776533
No 118
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=84.62 E-value=6.9 Score=26.07 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=31.7
Q ss_pred EEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 93 AVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 93 ~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
.++|....+-...+...++..|.++..+++......|...++.|.....
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgv 53 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGV 53 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCC
Confidence 3556666666666666666667777777777776666666666655433
No 119
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=84.14 E-value=2.5 Score=32.04 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=59.7
Q ss_pred EEEEecCCccHHHH-HHHHh---cc--CCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHh
Q psy1621 67 FYIYIEREDWKFDT-LCDLY---GT--LSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll---~~--~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.+...+....|-.. +.-++ .. ..+.++||.+++++-+..+++.+.+. +..+..++|+..... .....
T Consensus 69 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 145 (245)
T 3dkp_A 69 LLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPK 145 (245)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---Hhhhh
Confidence 45555555557654 33222 22 13457999999999999999888764 667777776532211 11222
Q ss_pred hcCCceEEEEcCC-----c---ccCCCCCCCCEEEEeC
Q psy1621 137 RSGSSRVLITTDL-----L---ARGIDVQQVSLVINYD 166 (224)
Q Consensus 137 ~~~~~~ilv~t~~-----~---~~Gvdi~~~~~vi~~~ 166 (224)
..+..+|+|+|+. + ...+++.++.++|.-.
T Consensus 146 ~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 146 SSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp SCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS
T ss_pred hcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeC
Confidence 3456789999962 1 1246777888777533
No 120
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=83.67 E-value=3.5 Score=37.75 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=52.4
Q ss_pred EEEecCCccHHH-HHHHHh-ccCCCCcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 68 YIYIEREDWKFD-TLCDLY-GTLSITQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 68 ~~~~~~~~~k~~-~l~~ll-~~~~~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
+....+.+.|.. ++.-++ ..+.+..++|.++|+.-|...++++.. .|+++..+.|+++.++|.... ..
T Consensus 100 Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~ 173 (844)
T 1tf5_A 100 IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AA 173 (844)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HS
T ss_pred EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CC
Confidence 334444444543 333333 445677899999999998887776644 589999999999987765442 25
Q ss_pred eEEEEcC
Q psy1621 142 RVLITTD 148 (224)
Q Consensus 142 ~ilv~t~ 148 (224)
.|+++|+
T Consensus 174 dIv~gTp 180 (844)
T 1tf5_A 174 DITYSTN 180 (844)
T ss_dssp SEEEEEH
T ss_pred CEEEECc
Confidence 7999997
No 121
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=83.51 E-value=1.4 Score=29.08 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=31.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..++++||.+-..+...+..|...|+ ++..+.||+
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 346899999999899999999999998 488899985
No 122
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=83.03 E-value=0.11 Score=40.03 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=31.5
Q ss_pred CcccceeecCCCCcc---cccccc--CccCcccccccccccHhhhhhhhhhHHHhhhhhhh
Q psy1621 1 MEELQMVCYPPGHGA---CADVHV--NVGARIGAGFNADINVEACADVDVNAAELRRRVLI 56 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i 56 (224)
+||++.+..+...+- ...++. .+...|.+++|||+++++.. +....+++|+.+
T Consensus 181 iDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~---~~~~~l~~p~~i 238 (245)
T 3dkp_A 181 VDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQ---WCKLNLDNVISV 238 (245)
T ss_dssp ESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHH---HHHHHSSSCEEE
T ss_pred EeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHH---HHHHhCCCCEEE
Confidence 488888776543322 112221 23467899999999998753 444666666544
No 123
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=82.89 E-value=3.4 Score=37.88 Aligned_cols=76 Identities=12% Similarity=-0.017 Sum_probs=52.1
Q ss_pred EEEecCCccHHH-HHHHHh-ccCCCCcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 68 YIYIEREDWKFD-TLCDLY-GTLSITQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 68 ~~~~~~~~~k~~-~l~~ll-~~~~~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
+......+.|.. ++.-++ ....+.+++|.++|+.-|...++.+.. .++++..+.|+++.++|.... ..
T Consensus 91 Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~ 164 (853)
T 2fsf_A 91 IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AA 164 (853)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HS
T ss_pred eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CC
Confidence 444444444544 333333 344567899999999988777776644 489999999999987655432 26
Q ss_pred eEEEEcCC
Q psy1621 142 RVLITTDL 149 (224)
Q Consensus 142 ~ilv~t~~ 149 (224)
.|+++|+.
T Consensus 165 dIvvgTpg 172 (853)
T 2fsf_A 165 DITYGTNN 172 (853)
T ss_dssp SEEEEEHH
T ss_pred CEEEECCc
Confidence 79999973
No 124
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=82.61 E-value=17 Score=29.50 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=61.5
Q ss_pred EEEEecCCccHHHH-HHHHhcc----CCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 67 FYIYIEREDWKFDT-LCDLYGT----LSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 67 ~~~~~~~~~~k~~~-l~~ll~~----~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
.+...+....|-.. +.-++.. ..+.++||.+++++-+..+++.+.+. +..+..++|+....+....+.
T Consensus 77 ~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 153 (410)
T 2j0s_A 77 VIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD--- 153 (410)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---
T ss_pred EEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh---
Confidence 45555555567743 3333332 24678999999999999998888664 467888999988766544332
Q ss_pred cCCceEEEEcC-----Cccc-CCCCCCCCEEEE
Q psy1621 138 SGSSRVLITTD-----LLAR-GIDVQQVSLVIN 164 (224)
Q Consensus 138 ~~~~~ilv~t~-----~~~~-Gvdi~~~~~vi~ 164 (224)
....|+|+|+ .+.. .++...+.+||.
T Consensus 154 -~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 154 -YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp -HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred -cCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 2357999996 2222 355666777664
No 125
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=82.55 E-value=0.075 Score=40.22 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=32.2
Q ss_pred CcccceeecCCCCcccccccc-CccCcccccccccccHhhhhhhhhhHHHhhhhhhh
Q psy1621 1 MEELQMVCYPPGHGACADVHV-NVGARIGAGFNADINVEACADVDVNAAELRRRVLI 56 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i 56 (224)
+||++.+..+........++. .+...|.+++|||+++++.. +....+.+|..+
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~---~~~~~~~~p~~i 214 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLE---VTTKFMRNPVRI 214 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHH---HHHHHCSSCEEE
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHH---HHHHHCCCCEEE
Confidence 488887665443333333332 13567899999999998643 344666665443
No 126
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=82.18 E-value=13 Score=27.48 Aligned_cols=117 Identities=10% Similarity=0.217 Sum_probs=77.5
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC----CcccCCCCCCCCEEEEeC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD----LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~----~~~~Gvdi~~~~~vi~~~ 166 (224)
.+.+++++.....+.+.+...+.+..+..+.+.+.. -....+.+ ....+|+||-- .+...+++|-+ +
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~--~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iPVV------~ 75 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTR--ASKIAFGL-QDEVDAIISRGATSDYIKKSVSIPSI------S 75 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHH--HHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSCEE------E
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHH--HHHHHHHh-cCCCeEEEECChHHHHHHHhCCCCEE------E
Confidence 467777888877776666666666677778887543 34445555 56678999843 45555666543 3
Q ss_pred CCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q psy1621 167 LPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPM 218 (224)
Q Consensus 167 ~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (224)
.+.|.-++++..-++-+.+. ..-++...+-...+..+++.++.++.....
T Consensus 76 I~~s~~Dil~al~~a~~~~~--kIavvg~~~~~~~~~~~~~ll~~~i~~~~~ 125 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN--ELALIAYKHSIVDKHEIEAMLGVKIKEFLF 125 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS--EEEEEEESSCSSCHHHHHHHHTCEEEEEEE
T ss_pred EcCCHhHHHHHHHHHHhhCC--cEEEEeCcchhhHHHHHHHHhCCceEEEEe
Confidence 57778888888888866543 333334455566678899999888776543
No 127
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=81.30 E-value=1.9 Score=28.40 Aligned_cols=37 Identities=14% Similarity=0.331 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+..++++||.+-..+...+..|.+.|+ ++..+.||+.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 457899999998889999999999998 4888999864
No 128
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=81.15 E-value=6.7 Score=30.84 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=60.2
Q ss_pred EEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhhcCCce
Q psy1621 67 FYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFRSGSSR 142 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ 142 (224)
.++..+....|-......+.. .+.++||.+++++-+..+++.+.+. +..+..++|+.+..+.... +. ...
T Consensus 34 ~lv~~~TGsGKT~~~~~~~~~-~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~ 107 (337)
T 2z0m_A 34 VVVRAKTGSGKTAAYAIPILE-LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NAD 107 (337)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCS
T ss_pred EEEEcCCCCcHHHHHHHHHHh-hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCC
Confidence 455555555576544333322 2578999999999999999888753 5688999999887654433 22 367
Q ss_pred EEEEcCCc-----c-cCCCCCCCCEEEE
Q psy1621 143 VLITTDLL-----A-RGIDVQQVSLVIN 164 (224)
Q Consensus 143 ilv~t~~~-----~-~Gvdi~~~~~vi~ 164 (224)
|+|+|+.. . ..+++...+.||.
T Consensus 108 i~v~T~~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 108 IVVATPGRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp EEEECHHHHHHHHHTTSCCGGGCSEEEE
T ss_pred EEEECHHHHHHHHHcCCcchhhCcEEEE
Confidence 99999631 2 2345566666664
No 129
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=80.83 E-value=5.2 Score=36.92 Aligned_cols=75 Identities=15% Similarity=0.067 Sum_probs=52.0
Q ss_pred EEEecCCccHHHH-HHHH-hccCCCCcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 68 YIYIEREDWKFDT-LCDL-YGTLSITQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 68 ~~~~~~~~~k~~~-l~~l-l~~~~~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
+....+.+.|-.+ +.-+ +..+.+..++|.++|+.-|...++++.. .|+++..+.|+++.++|.... ..
T Consensus 128 Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~ 201 (922)
T 1nkt_A 128 VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NA 201 (922)
T ss_dssp EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HS
T ss_pred EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CC
Confidence 4444444445432 2333 3445677899999999988777776644 589999999999987766543 25
Q ss_pred eEEEEcC
Q psy1621 142 RVLITTD 148 (224)
Q Consensus 142 ~ilv~t~ 148 (224)
.|+++|+
T Consensus 202 DIvygTp 208 (922)
T 1nkt_A 202 DITYGTN 208 (922)
T ss_dssp SEEEEEH
T ss_pred CEEEECc
Confidence 7999997
No 130
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=79.62 E-value=1.8 Score=30.37 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=31.0
Q ss_pred CCCcEEEEeCch--HHHHHHHHHHHhCCCeEEEecCCC
Q psy1621 89 SITQAVIFCNTR--RKVDWLTESMLKKEFTVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~--~~~~~l~~~L~~~~~~~~~~~g~~ 124 (224)
+..++++||.+- ..+...+..|+..|+++..+.||+
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~ 108 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGI 108 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcH
Confidence 356899999987 578889999999999999999995
No 131
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=79.49 E-value=1.7 Score=29.71 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=34.1
Q ss_pred HHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCC
Q psy1621 82 CDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMD 125 (224)
Q Consensus 82 ~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~ 125 (224)
.++.... +..++++||.+-..+...+..|.+.|+. +..+.||+.
T Consensus 73 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 73 EQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp HHHTTTCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred HHHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3333333 4578999999988889999999998884 888999963
No 132
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=78.34 E-value=11 Score=28.60 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=49.3
Q ss_pred EEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 67 FYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
.++..+.-..|-.....++... +.+++|+++++.-++.+.+.+.+.+.. +..++|+.. ....|+|
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v 176 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTV 176 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEE
Confidence 4444455555776665555544 578999999999999999998887777 888888753 2456888
Q ss_pred EcC
Q psy1621 146 TTD 148 (224)
Q Consensus 146 ~t~ 148 (224)
+|.
T Consensus 177 ~T~ 179 (237)
T 2fz4_A 177 STY 179 (237)
T ss_dssp EEH
T ss_pred EeH
Confidence 875
No 133
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=77.97 E-value=5.3 Score=37.08 Aligned_cols=75 Identities=11% Similarity=-0.026 Sum_probs=51.7
Q ss_pred EEecCCccHHH-HHHHH-hccCCCCcEEEEeCchHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHhhcCCce
Q psy1621 69 IYIEREDWKFD-TLCDL-YGTLSITQAVIFCNTRRKVDWLTESMLK----KEFTVSAMHGDMDQNARDVIMRQFRSGSSR 142 (224)
Q Consensus 69 ~~~~~~~~k~~-~l~~l-l~~~~~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ 142 (224)
......+.|.. ++.-+ +....+.+++|.++|+.-|...++.+.. .|+++..+.|+++.++|.... ...
T Consensus 97 aeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~D 170 (997)
T 2ipc_A 97 AEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LAD 170 (997)
T ss_dssp EECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSS
T ss_pred eeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCC
Confidence 33344344543 33333 3445677899999999988777766544 589999999999987766554 268
Q ss_pred EEEEcCC
Q psy1621 143 VLITTDL 149 (224)
Q Consensus 143 ilv~t~~ 149 (224)
|+++|+.
T Consensus 171 IvyGTpg 177 (997)
T 2ipc_A 171 VTYVTNS 177 (997)
T ss_dssp EEEEEHH
T ss_pred EEEECch
Confidence 9999973
No 134
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=77.77 E-value=2.5 Score=29.67 Aligned_cols=37 Identities=5% Similarity=0.116 Sum_probs=30.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+..++|+||.+-..+...+..|...|+ ++..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999988888899999999998 5889999974
No 135
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=77.71 E-value=3.4 Score=27.29 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=31.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
+..++++||.+-..+...+..|...|+....+.||+.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4578999999998999999999999985577889853
No 136
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=77.46 E-value=2 Score=29.64 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=31.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~ 124 (224)
+..++++||.+-..+...+..|.+.|+. +..+.||+
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 4568999999988888999999999985 99999985
No 137
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=76.68 E-value=3.6 Score=25.63 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=29.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~ 125 (224)
+..+++++|.+-..+...+..|.+.|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4578999999988899999999999885 5555 7743
No 138
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=76.56 E-value=2.8 Score=39.04 Aligned_cols=94 Identities=12% Similarity=0.110 Sum_probs=55.7
Q ss_pred EEEEecCCccHHHHHHHHh-ccC---C---CCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHH
Q psy1621 67 FYIYIEREDWKFDTLCDLY-GTL---S---ITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQ 135 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll-~~~---~---~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~ 135 (224)
.++..+....|-......+ ... + +.++||.++++.-+..+++.+.+. ++.+..+||+.+...+...+.
T Consensus 266 ~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~- 344 (936)
T 4a2w_A 266 ALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI- 344 (936)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH-
T ss_pred EEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc-
Confidence 3444555555665443333 222 2 678999999999988888777664 889999999986654322221
Q ss_pred hhcCCceEEEEcCC-----cccC-C-CCCCCCEEEE
Q psy1621 136 FRSGSSRVLITTDL-----LARG-I-DVQQVSLVIN 164 (224)
Q Consensus 136 f~~~~~~ilv~t~~-----~~~G-v-di~~~~~vi~ 164 (224)
+..+|+|+|+- +..+ + .+..+++||.
T Consensus 345 ---~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liVi 377 (936)
T 4a2w_A 345 ---EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (936)
T ss_dssp ---HHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred ---cCCCEEEecHHHHHHHHHcCccccccCCCEEEE
Confidence 13579999963 1222 2 4556677664
No 139
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=76.52 E-value=2.6 Score=29.13 Aligned_cols=37 Identities=14% Similarity=0.324 Sum_probs=31.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+..+++++|.+-..+...+..|.+.|+ ++..+.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 457899999998889999999999998 4888999853
No 140
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=76.29 E-value=3.1 Score=29.05 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=30.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~ 124 (224)
+..++++||.+-..+...+..|...|+. +..+.||+
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 3567999999988999999999999984 88899984
No 141
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=76.16 E-value=1.9 Score=29.94 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=31.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..++++||.+-..+...+..|.+.|+ ++..+.||+
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 457899999998888899999999998 588999995
No 142
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=75.32 E-value=6.9 Score=32.83 Aligned_cols=68 Identities=15% Similarity=0.048 Sum_probs=50.3
Q ss_pred EEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 67 FYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
.++..+....|-......+... +.++||.|+++.-+..+++.+.+.+.. +..+||+... ...|+|
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~-~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv 176 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTV 176 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEE
Confidence 4445555555766555544433 579999999999999999999888888 9999998642 346778
Q ss_pred EcC
Q psy1621 146 TTD 148 (224)
Q Consensus 146 ~t~ 148 (224)
+|.
T Consensus 177 ~T~ 179 (472)
T 2fwr_A 177 STY 179 (472)
T ss_dssp EEH
T ss_pred EEc
Confidence 775
No 143
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=74.25 E-value=4.8 Score=35.72 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=59.0
Q ss_pred EEEEecCCccHHHHHHHH----hccC---CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHH
Q psy1621 67 FYIYIEREDWKFDTLCDL----YGTL---SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQ 135 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~l----l~~~---~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~ 135 (224)
.++..+....|-...... +... .+.++||.++++.-+....+.+.+. ++.+..++|+.+...+...+
T Consensus 31 ~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-- 108 (696)
T 2ykg_A 31 TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI-- 108 (696)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH--
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh--
Confidence 344555555565533222 2222 1278999999999888888877665 78999999988653322221
Q ss_pred hhcCCceEEEEcCC-----cccC-C-CCCCCCEEEEeC
Q psy1621 136 FRSGSSRVLITTDL-----LARG-I-DVQQVSLVINYD 166 (224)
Q Consensus 136 f~~~~~~ilv~t~~-----~~~G-v-di~~~~~vi~~~ 166 (224)
. ...+|+|+|+- +..| + ++.++++||.-.
T Consensus 109 -~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDE 144 (696)
T 2ykg_A 109 -V-ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 144 (696)
T ss_dssp -H-HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEET
T ss_pred -c-cCCCEEEECHHHHHHHHhcCcccccccccEEEEeC
Confidence 1 23689999973 2223 3 566677776533
No 144
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=74.07 E-value=23 Score=30.34 Aligned_cols=96 Identities=16% Similarity=0.102 Sum_probs=59.0
Q ss_pred EEEEEecCCccHHHH----HHHHh-ccC----CCCcEEEEeCchHHHHHHHHHHHhC--------CCeEEEecCCCCHHH
Q psy1621 66 QFYIYIEREDWKFDT----LCDLY-GTL----SITQAVIFCNTRRKVDWLTESMLKK--------EFTVSAMHGDMDQNA 128 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~----l~~ll-~~~----~~~~~iIf~~t~~~~~~l~~~L~~~--------~~~~~~~~g~~~~~~ 128 (224)
..+...+....|-.. +...+ ... .+.++||.++|++-+..+++.+.+. ...+..++|+.+...
T Consensus 113 ~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 192 (563)
T 3i5x_A 113 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 192 (563)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH
T ss_pred eEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH
Confidence 345555555567653 22222 221 1347999999999999998888762 345777888876543
Q ss_pred HHHHHHHhhcCCceEEEEcCCcc-----c--CCCCCCCCEEEE
Q psy1621 129 RDVIMRQFRSGSSRVLITTDLLA-----R--GIDVQQVSLVIN 164 (224)
Q Consensus 129 r~~~~~~f~~~~~~ilv~t~~~~-----~--Gvdi~~~~~vi~ 164 (224)
.++.+..+...|+|+|+..- . ...+..+.+||.
T Consensus 193 ---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 193 ---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp ---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred ---HHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 34445555678999997321 1 224555666664
No 145
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=72.92 E-value=25 Score=30.37 Aligned_cols=96 Identities=18% Similarity=0.127 Sum_probs=59.2
Q ss_pred EEEEEecCCccHHHH-HH---H-HhccC----CCCcEEEEeCchHHHHHHHHHHHhC--------CCeEEEecCCCCHHH
Q psy1621 66 QFYIYIEREDWKFDT-LC---D-LYGTL----SITQAVIFCNTRRKVDWLTESMLKK--------EFTVSAMHGDMDQNA 128 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~-l~---~-ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~--------~~~~~~~~g~~~~~~ 128 (224)
..+...+....|-.. +. . +.... .+.++||.++|++-+..+++.+.+. ...+..++|+.....
T Consensus 62 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 141 (579)
T 3sqw_A 62 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 141 (579)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH
T ss_pred eEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH
Confidence 445555565567653 22 2 22221 1347999999999999888887652 356777788766543
Q ss_pred HHHHHHHhhcCCceEEEEcCCc-----cc--CCCCCCCCEEEE
Q psy1621 129 RDVIMRQFRSGSSRVLITTDLL-----AR--GIDVQQVSLVIN 164 (224)
Q Consensus 129 r~~~~~~f~~~~~~ilv~t~~~-----~~--Gvdi~~~~~vi~ 164 (224)
.++.+..+...|+|+|+.. .. ...+..+.+||.
T Consensus 142 ---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 142 ---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp ---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred ---HHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 3445555567899999731 11 234556676664
No 146
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=70.68 E-value=3.3 Score=28.44 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=30.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
..++++||.+-..+...+..|.+.|+ ++..+.|++.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 56899999998888888999999998 5888889974
No 147
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=70.29 E-value=20 Score=23.45 Aligned_cols=46 Identities=7% Similarity=0.008 Sum_probs=33.6
Q ss_pred CCcEEEEeC------chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHH
Q psy1621 90 ITQAVIFCN------TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQ 135 (224)
Q Consensus 90 ~~~~iIf~~------t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~ 135 (224)
..+++||.. ....|..+.+.|.+.++....+.=...++.+....+.
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 468999998 4889999999999998877666544445555544443
No 148
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=67.44 E-value=24 Score=23.25 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=33.3
Q ss_pred CCcEEEEe------CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHH
Q psy1621 90 ITQAVIFC------NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMR 134 (224)
Q Consensus 90 ~~~~iIf~------~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~ 134 (224)
..+++||. ++...|..+.+.|.+.++....+.=...++.+..+.+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 47899999 5788899999999999887776654445555554443
No 149
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=66.74 E-value=22 Score=23.51 Aligned_cols=111 Identities=14% Similarity=0.026 Sum_probs=60.4
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc----CCceE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS----GSSRV 143 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~----~~~~i 143 (224)
+..++....-...+..++....+...+..+.+...+. +.+.+..+.+.++.-.++...-...++.+++ ....|
T Consensus 11 iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~---~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 87 (143)
T 3cnb_A 11 ILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAG---DLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIV 87 (143)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHH---HHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEE
T ss_pred EEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHH---HHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcE
Confidence 3445554445566667766523345355565555443 4445566788887766655445556666654 34566
Q ss_pred EEEcCCccc-----CCCCCCCCEEEEeCCCCChhHHHHHHhhccCC
Q psy1621 144 LITTDLLAR-----GIDVQQVSLVINYDLPSNRENYIHRIGRGGRF 184 (224)
Q Consensus 144 lv~t~~~~~-----Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~ 184 (224)
++.|..... .+.. ++..+ +..|.+...+.+++.++.+.
T Consensus 88 i~~s~~~~~~~~~~~~~~-g~~~~--l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 88 IAMTGALTDDNVSRIVAL-GAETC--FGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp EEEESSCCHHHHHHHHHT-TCSEE--EESSCCHHHHHHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHhc-CCcEE--EeCCCCHHHHHHHHHHHHHh
Confidence 666543211 1111 22222 23578888888877776543
No 150
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=66.13 E-value=7.5 Score=30.40 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=36.3
Q ss_pred HHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 80 TLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 80 ~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
.+...+...+..++++||.+-..+...+..|.+.|+ ++..+.||+.
T Consensus 171 ~l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 171 YVQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp HHHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 333344434567899999999999999999999998 6888999964
No 151
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=66.12 E-value=19 Score=30.35 Aligned_cols=91 Identities=9% Similarity=0.054 Sum_probs=58.7
Q ss_pred EEEEecCCccHHHHHHHHhcc---CCCCcEEEEeCchHHHHHHHHHHHhCC----CeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 67 FYIYIEREDWKFDTLCDLYGT---LSITQAVIFCNTRRKVDWLTESMLKKE----FTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~---~~~~~~iIf~~t~~~~~~l~~~L~~~~----~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
.++..+....|-......+.. ....++||.++++.-+..+++.+.+.+ ..+..++|+.+..++ ..+
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~ 203 (510)
T 2oca_A 131 RILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKN 203 (510)
T ss_dssp EEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCT
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------ccc
Confidence 444555555576655443332 134599999999999999999997752 368889998776543 356
Q ss_pred CceEEEEcCC-cccC--CCCCCCCEEEE
Q psy1621 140 SSRVLITTDL-LARG--IDVQQVSLVIN 164 (224)
Q Consensus 140 ~~~ilv~t~~-~~~G--vdi~~~~~vi~ 164 (224)
...|+|+|.- +... ..+.+...||.
T Consensus 204 ~~~I~i~T~~~l~~~~~~~~~~~~liIi 231 (510)
T 2oca_A 204 DAPVVVGTWQTVVKQPKEWFSQFGMMMN 231 (510)
T ss_dssp TCSEEEEEHHHHTTSCGGGGGGEEEEEE
T ss_pred CCcEEEEeHHHHhhchhhhhhcCCEEEE
Confidence 7789999963 2111 23444555554
No 152
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=65.68 E-value=10 Score=29.41 Aligned_cols=38 Identities=8% Similarity=0.144 Sum_probs=32.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCCH
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMDQ 126 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~~ 126 (224)
+..++++||.+-.++...+..|...|+ ++..+.|++..
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 457899999998888899999999998 58899999753
No 153
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=64.76 E-value=16 Score=34.73 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=50.8
Q ss_pred EEEEecCCccHHHHHHHHh-cc-CCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEE
Q psy1621 67 FYIYIEREDWKFDTLCDLY-GT-LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVL 144 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll-~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~il 144 (224)
.++..+....|-......+ .. ..+.++||.++++.-+...++.+.+....+..++|+.+. ++...|+
T Consensus 202 vLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~-----------~~~~~Il 270 (1108)
T 3l9o_A 202 VLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCL 270 (1108)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBC-----------CCSCSEE
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcccc-----------CCCCCEE
Confidence 4555555555765433222 22 246789999999999999999998876689999998762 3567889
Q ss_pred EEcC
Q psy1621 145 ITTD 148 (224)
Q Consensus 145 v~t~ 148 (224)
|+|+
T Consensus 271 V~Tp 274 (1108)
T 3l9o_A 271 VMTT 274 (1108)
T ss_dssp EEEH
T ss_pred EeCh
Confidence 9984
No 154
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=64.66 E-value=3.9 Score=30.01 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=34.1
Q ss_pred CCcEEEEeCchHHHHH-HHHHHHh---CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 90 ITQAVIFCNTRRKVDW-LTESMLK---KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~-l~~~L~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
+.++||.|+++.-++. +.+.+.+ .+..+..++|+.....+...+. ....|+|+|+
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5789999999988777 5554443 3678888888764332211111 1357889886
No 155
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=63.53 E-value=1.6 Score=38.91 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=45.5
Q ss_pred CcEEEEeCchHHHHHH-HHHHHhCC---CeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-c-----------ccCC
Q psy1621 91 TQAVIFCNTRRKVDWL-TESMLKKE---FTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL-L-----------ARGI 154 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l-~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~-~-----------~~Gv 154 (224)
.++||.++++.-+..+ ++.+.+.. +.+..++|+.+..++...+. +..+|+|+|+- + ...+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999988888 77776653 79999999976544332222 45789999873 1 2234
Q ss_pred CCCCCCEEEE
Q psy1621 155 DVQQVSLVIN 164 (224)
Q Consensus 155 di~~~~~vi~ 164 (224)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 5666777764
No 156
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=63.26 E-value=6.1 Score=27.95 Aligned_cols=35 Identities=9% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCcEEEEeCch---------HHHHHHHHHHHhCCCeEEEecCCC
Q psy1621 90 ITQAVIFCNTR---------RKVDWLTESMLKKEFTVSAMHGDM 124 (224)
Q Consensus 90 ~~~~iIf~~t~---------~~~~~l~~~L~~~~~~~~~~~g~~ 124 (224)
..++|+||.+- ..+..++..|.+.|+++..+.||+
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 56899999887 357788899999999999999994
No 157
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=62.51 E-value=15 Score=28.44 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=35.7
Q ss_pred HHHHHHhcc--C-CCCcEEEEeCchHHHHHHHHHHH-hCCC-eEEEecCCC
Q psy1621 79 DTLCDLYGT--L-SITQAVIFCNTRRKVDWLTESML-KKEF-TVSAMHGDM 124 (224)
Q Consensus 79 ~~l~~ll~~--~-~~~~~iIf~~t~~~~~~l~~~L~-~~~~-~~~~~~g~~ 124 (224)
+.+.+.+.. . +..++|+||.+-..+...+..|. ..|+ ++..+.|++
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 345555554 3 45789999999888888899998 8888 688999985
No 158
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=60.99 E-value=8.5 Score=28.99 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=32.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
+..++++||.+-..+...+..|...|.++..+.|++.
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 4578999999999999999999999977888899853
No 159
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=59.40 E-value=33 Score=27.38 Aligned_cols=92 Identities=11% Similarity=0.110 Sum_probs=57.7
Q ss_pred EEEEecCCccHHHHH-HHHhccC----CCCcEEEEeCchHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHhh
Q psy1621 67 FYIYIEREDWKFDTL-CDLYGTL----SITQAVIFCNTRRKVDWLTESMLKK----EFTVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l-~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
..+..+....|-... .-++... .+.++||.++++.-+..+++.+.+. +..+..++++..... .
T Consensus 47 ~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 118 (395)
T 3pey_A 47 MIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--------K 118 (395)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------S
T ss_pred EEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------c
Confidence 455555555676533 2333222 4568999999999999999888763 456777776643211 2
Q ss_pred cCCceEEEEcCCc------ccCCCCCCCCEEEEeC
Q psy1621 138 SGSSRVLITTDLL------ARGIDVQQVSLVINYD 166 (224)
Q Consensus 138 ~~~~~ilv~t~~~------~~Gvdi~~~~~vi~~~ 166 (224)
.....|+|+|+.. ...+++..++.||.-.
T Consensus 119 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 119 QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 2356799999631 3345667777776433
No 160
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=58.33 E-value=94 Score=27.51 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=56.3
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCC-C-eEEEec--------------------CCC-
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKE-F-TVSAMH--------------------GDM- 124 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~-~-~~~~~~--------------------g~~- 124 (224)
..-+.. ..|.-.+..++... +.++||.+++...|..+++.|+... . .+.++- ...
T Consensus 33 l~g~tg-s~kt~~~a~~~~~~-~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~ 110 (664)
T 1c4o_A 33 LLGATG-TGKTVTMAKVIEAL-GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDAS 110 (664)
T ss_dssp EEECTT-SCHHHHHHHHHHHH-TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCS
T ss_pred EEcCCC-cHHHHHHHHHHHHh-CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcc
Confidence 333444 34777777766553 3589999999999999999998762 2 343332 222
Q ss_pred -C---HHHHHHHHHHhhcCCceEEEEcCCcccC
Q psy1621 125 -D---QNARDVIMRQFRSGSSRVLITTDLLARG 153 (224)
Q Consensus 125 -~---~~~r~~~~~~f~~~~~~ilv~t~~~~~G 153 (224)
+ ...|..++.++.+++..|+|+|-.+-.|
T Consensus 111 ~~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~ 143 (664)
T 1c4o_A 111 INPEIERLRHSTTRSLLTRRDVIVVASVSAIYG 143 (664)
T ss_dssp CCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSC
T ss_pred cCHHHHHHHHHHHHHHHhCCCeEEEecHHHHhc
Confidence 2 4578888999877777788887544345
No 161
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=58.32 E-value=81 Score=26.80 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=66.2
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC-CCeEEEecCC-------CC-----HHHHHHHHHHhhcCCce
Q psy1621 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK-EFTVSAMHGD-------MD-----QNARDVIMRQFRSGSSR 142 (224)
Q Consensus 76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~~g~-------~~-----~~~r~~~~~~f~~~~~~ 142 (224)
.|.-.+..+.... +.++||.+++...|..+++.|+.. +..+.++-+. .+ ..+|..++.++.+++..
T Consensus 26 ~ka~~~a~l~~~~-~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ 104 (483)
T 3hjh_A 26 ACATLVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG 104 (483)
T ss_dssp HHHHHHHHHHHHS-SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSS
T ss_pred HHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCC
Confidence 3666666766553 468999999999999999999875 2234433221 11 24688888888888888
Q ss_pred EEEEcCCcccCCCCC-----CCCEEEEeCCCCChhHHHHHH
Q psy1621 143 VLITTDLLARGIDVQ-----QVSLVINYDLPSNRENYIHRI 178 (224)
Q Consensus 143 ilv~t~~~~~Gvdi~-----~~~~vi~~~~p~s~~~~~q~~ 178 (224)
|+|+|-.+-.+.=.| .....+..+...+...+.++.
T Consensus 105 ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L 145 (483)
T 3hjh_A 105 VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 (483)
T ss_dssp EEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHH
T ss_pred EEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHH
Confidence 888875433332222 234556666667776666654
No 162
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=57.88 E-value=25 Score=23.87 Aligned_cols=40 Identities=5% Similarity=0.025 Sum_probs=34.4
Q ss_pred eCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHh
Q psy1621 97 CNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 97 ~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
|.+++.|..+..+|...++....+.=.++++.|....+..
T Consensus 13 c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 13 TAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 4467778999999999999998888888899999888887
No 163
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=56.92 E-value=41 Score=22.45 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHHHhccCCCCcEEEEeC------chHHHHHHHHHHHhCCCe-EEEecCCCCHHHHHHHHH
Q psy1621 80 TLCDLYGTLSITQAVIFCN------TRRKVDWLTESMLKKEFT-VSAMHGDMDQNARDVIMR 134 (224)
Q Consensus 80 ~l~~ll~~~~~~~~iIf~~------t~~~~~~l~~~L~~~~~~-~~~~~g~~~~~~r~~~~~ 134 (224)
.+.++++. .+++||.. ....|..+.+.|.+.++. ...+.=...++.+..+.+
T Consensus 12 ~v~~~i~~---~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~ 70 (118)
T 2wem_A 12 QLDALVKK---DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 70 (118)
T ss_dssp HHHHHHHH---SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHH
T ss_pred HHHHHhcc---CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHH
Confidence 44555554 68999998 488899999999999884 666665555555554433
No 164
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=56.92 E-value=27 Score=32.69 Aligned_cols=72 Identities=10% Similarity=0.114 Sum_probs=47.6
Q ss_pred EEEEEecCCccHHHHHH-HHhcc-CCCCcEEEEeCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 66 QFYIYIEREDWKFDTLC-DLYGT-LSITQAVIFCNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~l~-~ll~~-~~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
..++..++...|-.... -+... ..+.++||.++++.-+...++.+.+. +..+..++|+.+. ++..
T Consensus 56 ~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~-----------~~~~ 124 (997)
T 4a4z_A 56 SVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQI-----------NPDA 124 (997)
T ss_dssp EEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEE-----------CTTS
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcc-----------CCCC
Confidence 34555555555764322 22211 24578999999999999999999886 5689999998642 2345
Q ss_pred eEEEEcC
Q psy1621 142 RVLITTD 148 (224)
Q Consensus 142 ~ilv~t~ 148 (224)
+|+|+|+
T Consensus 125 ~IlV~Tp 131 (997)
T 4a4z_A 125 NCLIMTT 131 (997)
T ss_dssp SEEEEEH
T ss_pred CEEEECH
Confidence 6666664
No 165
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=56.89 E-value=50 Score=23.48 Aligned_cols=84 Identities=14% Similarity=0.259 Sum_probs=55.9
Q ss_pred EEecCCccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy1621 69 IYIEREDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLIT 146 (224)
Q Consensus 69 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~ 146 (224)
..+.+.+.-...+.+.+... ..+.+.|.+.+..++..+.+.|.+.|+.+..+.++.. .+ ...|.+.
T Consensus 38 ~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~ 105 (174)
T 3dmn_A 38 VVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVV 105 (174)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEE
T ss_pred EEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEE
Confidence 33433332344444444321 3567888999999999999999998888877765431 12 2358899
Q ss_pred cCCcccCCCCCCCCEEEEeCC
Q psy1621 147 TDLLARGIDVQQVSLVINYDL 167 (224)
Q Consensus 147 t~~~~~Gvdi~~~~~vi~~~~ 167 (224)
|--...|+.+ +.|+.++.
T Consensus 106 t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 106 PSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp EGGGCTTCCE---EEEEEETC
T ss_pred EccccCCcCC---CEEEEecC
Confidence 9988999886 56666654
No 166
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=56.60 E-value=45 Score=22.87 Aligned_cols=56 Identities=2% Similarity=-0.035 Sum_probs=38.9
Q ss_pred HHHHHHHhccCCCCcEEEEeC------chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHh
Q psy1621 78 FDTLCDLYGTLSITQAVIFCN------TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 78 ~~~l~~ll~~~~~~~~iIf~~------t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.+.+.+++.. .+++||+. +...|..+.+.|.+.++....+.=...++.+..+.+..
T Consensus 25 ~~~v~~~i~~---~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~ 86 (135)
T 2wci_A 25 IEKIQRQIAE---NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYA 86 (135)
T ss_dssp HHHHHHHHHH---CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhcc---CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHH
Confidence 3444455444 57888977 68889999999999988877776655666555554444
No 167
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=56.50 E-value=54 Score=25.10 Aligned_cols=65 Identities=8% Similarity=0.188 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhh-c----CCceEEEEcC----------CcccCCCCCCCCEEEEeC
Q psy1621 102 KVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFR-S----GSSRVLITTD----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 102 ~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~-~----~~~~ilv~t~----------~~~~Gvdi~~~~~vi~~~ 166 (224)
..+-+.+.|.+.++.+..+.+..+.+.-....+.+. . .....++|.+ +-..|+.+|+--.|+-||
T Consensus 149 R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D 228 (295)
T 3hcw_A 149 RIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIEIPKDVMTATFN 228 (295)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHHTTCCTTTTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEEECChHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 345556667788888777777777766555555543 2 2567777766 346799998755566555
No 168
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=55.98 E-value=12 Score=29.43 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=43.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+.+-+|||.|+...++.+.+.|+..|+.+. .+..++.++-.+.+++|.+.
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQFACM 91 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHHHTC
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHhc
Confidence 457899999999999999999999999975 56688899999999998753
No 169
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=54.98 E-value=80 Score=26.25 Aligned_cols=95 Identities=9% Similarity=0.034 Sum_probs=58.2
Q ss_pred eEEEEEecCCccHHHH-HHHHhccC----CCCcEEEEeCchHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHH
Q psy1621 65 RQFYIYIEREDWKFDT-LCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKK-----EFTVSAMHGDMDQNARDVIMR 134 (224)
Q Consensus 65 ~~~~~~~~~~~~k~~~-l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~ 134 (224)
...+...+....|-.. +.-++... ...++||.+++++-+..+++.+.+. +..+....++.....
T Consensus 132 ~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 205 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER------ 205 (479)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT------
T ss_pred CcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc------
Confidence 3455555666667765 44454443 2337999999999999887776552 456666666543211
Q ss_pred HhhcCCceEEEEcCCcc-------cCCCCCCCCEEEEeC
Q psy1621 135 QFRSGSSRVLITTDLLA-------RGIDVQQVSLVINYD 166 (224)
Q Consensus 135 ~f~~~~~~ilv~t~~~~-------~Gvdi~~~~~vi~~~ 166 (224)
.......|+|+|+-.- ..+++.++.+||.-.
T Consensus 206 -~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 243 (479)
T 3fmp_B 206 -GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (479)
T ss_dssp -TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECC
T ss_pred -cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEEC
Confidence 1123457999997321 356677788777533
No 170
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=54.64 E-value=17 Score=28.00 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=31.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..++++||.+-..+...+..|...|+ ++..+.|++
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 457899999998888899999999998 588888985
No 171
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=54.59 E-value=67 Score=24.24 Aligned_cols=118 Identities=9% Similarity=0.234 Sum_probs=72.0
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCC--CeEEEecCCCCHHHHHHHHHH-hhcCCceEEEEcC----CcccCCCCCCCCEEE
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKKE--FTVSAMHGDMDQNARDVIMRQ-FRSGSSRVLITTD----LLARGIDVQQVSLVI 163 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~~--~~~~~~~g~~~~~~r~~~~~~-f~~~~~~ilv~t~----~~~~Gvdi~~~~~vi 163 (224)
.+.++.++.....+...+...+.+ ..+..+.+.+.. -....+. ...+..+|+||-- .+...+++|-+
T Consensus 13 ~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~--av~~a~~~~~~~~~dVIISRGgta~~Lr~~~~iPVV---- 86 (225)
T 2pju_A 13 KPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEK--AVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVI---- 86 (225)
T ss_dssp CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHH--HHHHHHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEE----
T ss_pred CCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHH--HHHHHHHHHhcCCCeEEEeCChHHHHHHhhCCCCEE----
Confidence 356555666655554444444333 456666677533 2332333 4445578999843 45555666533
Q ss_pred EeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q psy1621 164 NYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPM 218 (224)
Q Consensus 164 ~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (224)
+.+.|.-++++.+-++.+.+. ..++ +...+-...+..+++.++.++.....
T Consensus 87 --~I~vs~~Dil~aL~~a~~~~~-kIav-Vg~~~~~~~~~~i~~ll~~~i~~~~~ 137 (225)
T 2pju_A 87 --LIKPSGYDVLQFLAKAGKLTS-SIGV-VTYQETIPALVAFQKTFNLRLDQRSY 137 (225)
T ss_dssp --EECCCHHHHHHHHHHTTCTTS-CEEE-EEESSCCHHHHHHHHHHTCCEEEEEE
T ss_pred --EecCCHHHHHHHHHHHHhhCC-cEEE-EeCchhhhHHHHHHHHhCCceEEEEe
Confidence 357788889999988877643 3333 34455667788899999988776543
No 172
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=53.98 E-value=40 Score=21.52 Aligned_cols=53 Identities=8% Similarity=-0.036 Sum_probs=36.1
Q ss_pred CcEEEEe------CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceE
Q psy1621 91 TQAVIFC------NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRV 143 (224)
Q Consensus 91 ~~~iIf~------~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~i 143 (224)
.+++||. +....|..+...|.+.++.+..+.-...++.+....+.+.......
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ 75 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQ 75 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCE
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCe
Confidence 5788888 4677888999999888887777766656665555555443333333
No 173
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=53.67 E-value=7.6 Score=25.95 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=28.4
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC------C-CeEEEecCCCC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKK------E-FTVSAMHGDMD 125 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~------~-~~~~~~~g~~~ 125 (224)
.+++++|.+-..+...+..|.+. | .++..+.||+.
T Consensus 73 ~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 73 VPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 48999999988888888888877 3 37888999864
No 174
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=53.23 E-value=36 Score=26.50 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+...++.+.+.|++.|+.+ .++..++.++-.+.+++|.+.
T Consensus 47 t~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~ 86 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQLM 86 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 4578999999999999997 466788999999999999753
No 175
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=52.21 E-value=17 Score=29.48 Aligned_cols=92 Identities=10% Similarity=0.028 Sum_probs=56.8
Q ss_pred EEEEEecCCccHHHH-HHHHhccC----CCCcEEEEeCchHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHH
Q psy1621 66 QFYIYIEREDWKFDT-LCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKK-----EFTVSAMHGDMDQNARDVIMRQ 135 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~-l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~ 135 (224)
..++..+....|-.. +.-++... .+.++||.+++++-+..+++.+.+. +..+...+++.....
T Consensus 66 ~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 138 (412)
T 3fht_A 66 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER------- 138 (412)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------
T ss_pred eEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------
Confidence 345555665567654 33333222 3458999999999999988877663 456777777654321
Q ss_pred hhcCCceEEEEcCCc------c-cCCCCCCCCEEEE
Q psy1621 136 FRSGSSRVLITTDLL------A-RGIDVQQVSLVIN 164 (224)
Q Consensus 136 f~~~~~~ilv~t~~~------~-~Gvdi~~~~~vi~ 164 (224)
.......|+|+|+.. . ..+++..+.+||.
T Consensus 139 ~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 139 GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 123456799999731 1 3455566777664
No 176
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=51.79 E-value=53 Score=23.78 Aligned_cols=39 Identities=8% Similarity=0.179 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
+...++.+++.|++.|+.+. ++..++.++-.+.+++|.+
T Consensus 63 ~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 63 AEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 45889999999999999975 5677889999999999864
No 177
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=51.27 E-value=51 Score=21.95 Aligned_cols=52 Identities=13% Similarity=0.046 Sum_probs=35.0
Q ss_pred HHHHHhccCCCCcEEEEeCc------hHHHHHHHHHHHhCCCe---EEEecCCCCHHHHHHHHH
Q psy1621 80 TLCDLYGTLSITQAVIFCNT------RRKVDWLTESMLKKEFT---VSAMHGDMDQNARDVIMR 134 (224)
Q Consensus 80 ~l~~ll~~~~~~~~iIf~~t------~~~~~~l~~~L~~~~~~---~~~~~g~~~~~~r~~~~~ 134 (224)
.+.++++. .+++||..+ ..-|..+.+.|.+.++. +..+.=...++.+....+
T Consensus 8 ~v~~~i~~---~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~ 68 (121)
T 3gx8_A 8 AIEDAIES---APVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68 (121)
T ss_dssp HHHHHHHS---CSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHH
T ss_pred HHHHHhcc---CCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHH
Confidence 34444443 689999984 88899999999888876 555554445555554433
No 178
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=50.78 E-value=47 Score=21.40 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=33.9
Q ss_pred CcEEEEeC------chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHh
Q psy1621 91 TQAVIFCN------TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 91 ~~~iIf~~------t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.+++||.. +...|..+...|...++....+.=...++.+....+..
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 57888876 56678889999999998888877766666555554444
No 179
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=49.88 E-value=49 Score=21.26 Aligned_cols=110 Identities=8% Similarity=0.119 Sum_probs=62.7
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc----CCceE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS----GSSRV 143 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~----~~~~i 143 (224)
+..++....-...+..++.... . .+..+.+.+++ .+.+.+..+.+..+.-.++.......++.+++ ....|
T Consensus 6 ilivdd~~~~~~~l~~~L~~~g-~-~v~~~~~~~~a---~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 6 ALIVEDYQAAAETFKELLEMLG-F-QADYVMSGTDA---LHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp EEEECSCHHHHHHHHHHHHHTT-E-EEEEESSHHHH---HHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred EEEEcCCHHHHHHHHHHHHHcC-C-CEEEECCHHHH---HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 3445554445666777776643 2 34445554433 34556667788888766665555556666653 34567
Q ss_pred EEEcCCcccCCCCC----CCCEEEEeCCCCChhHHHHHHhhccCCC
Q psy1621 144 LITTDLLARGIDVQ----QVSLVINYDLPSNRENYIHRIGRGGRFG 185 (224)
Q Consensus 144 lv~t~~~~~Gvdi~----~~~~vi~~~~p~s~~~~~q~~GR~~R~g 185 (224)
++.|....... .. ++.. .+.-|.+...+.+++.++.+.+
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~--~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDF--YLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSE--EEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCcchhH-HHHHHHhhHH--heeCCCCHHHHHHHHHHhhccC
Confidence 77665443332 11 1222 3456889999999998887654
No 180
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=49.87 E-value=82 Score=23.90 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=62.8
Q ss_pred hhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeC-----chHHHHHHHHHHHhCCCe--EEEecCC
Q psy1621 51 RRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCN-----TRRKVDWLTESMLKKEFT--VSAMHGD 123 (224)
Q Consensus 51 ~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~-----t~~~~~~l~~~L~~~~~~--~~~~~g~ 123 (224)
..|++..+.........++..++.. -...+.+.+.+....++.++.. .....+-+.+.|.+.+.. ...+.+.
T Consensus 88 ~iPvV~i~~~~~~~~~~~V~~D~~~-~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 166 (289)
T 3k9c_A 88 RVPALVVARASGLPGVGAVRGDDVA-GITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVTGG 166 (289)
T ss_dssp TSCEEEESSCCSSTTSEEEEECHHH-HHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCC
T ss_pred CCCEEEEcCCCCCCCCCEEEeChHH-HHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEECC
Confidence 4566655544332233445555433 3334444444443344443332 233445566667777765 4566777
Q ss_pred CCHHHHHHHHHHhhc--CCceEEEEcC----------CcccCCCCCCCCEEEEeC
Q psy1621 124 MDQNARDVIMRQFRS--GSSRVLITTD----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 124 ~~~~~r~~~~~~f~~--~~~~ilv~t~----------~~~~Gvdi~~~~~vi~~~ 166 (224)
.+.+.-.+..+++-+ .+...++|++ +-..|+.+|+--.|+-+|
T Consensus 167 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D 221 (289)
T 3k9c_A 167 TTETEGAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYD 221 (289)
T ss_dssp SSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 777766666666543 3566777765 346799998654555444
No 181
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=49.66 E-value=83 Score=24.08 Aligned_cols=59 Identities=10% Similarity=0.073 Sum_probs=42.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHH-HHHHHHHhh--cCCceEEEEcC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNA-RDVIMRQFR--SGSSRVLITTD 148 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~-r~~~~~~f~--~~~~~ilv~t~ 148 (224)
+-++++.-.+.+.++.+++.+.+.+.++..+.++++..+ -+...+... -|.++|||..-
T Consensus 31 Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 31 DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 457777777888899999999998889999999887543 233333322 27899998754
No 182
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=49.35 E-value=56 Score=25.90 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=39.8
Q ss_pred CcEEEEeCc-----------hHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 91 TQAVIFCNT-----------RRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 91 ~~~iIf~~t-----------~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
+-+|||+|. ...++.+++.|++.|+.+. ++-.++.++-.+.+++|.+
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 458888876 6789999999999999975 6668899999999999964
No 183
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=49.22 E-value=21 Score=27.59 Aligned_cols=36 Identities=8% Similarity=-0.006 Sum_probs=28.9
Q ss_pred CCCcEEEEeCchHH-HHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRRK-VDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~-~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..++||||.+-.. +..++..|+..|+ ++..+.||+
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 45789999987655 7888888999988 688888864
No 184
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=47.77 E-value=26 Score=29.09 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=35.2
Q ss_pred HHHHHHhcc--C-CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 79 DTLCDLYGT--L-SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 79 ~~l~~ll~~--~-~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+.+.+.+.. . +..++|+||.+-..+...+..|...|+ ++..+.|++.
T Consensus 189 ~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 189 EQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 344444432 2 456899999998888899999998888 6888888753
No 185
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=47.41 E-value=76 Score=28.28 Aligned_cols=89 Identities=10% Similarity=-0.030 Sum_probs=58.2
Q ss_pred EEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhC-CCeEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy1621 67 FYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKK-EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLI 145 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv 145 (224)
.....+.-..|-..+...+.+ .+.++||.++++.-+..+++.+.+. +..+...+|+.. ..+..+|++
T Consensus 235 vlv~ApTGSGKT~a~~l~ll~-~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV 302 (666)
T 3o8b_A 235 AHLHAPTGSGKSTKVPAAYAA-QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTY 302 (666)
T ss_dssp EEEECCTTSCTTTHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEE
T ss_pred EEEEeCCchhHHHHHHHHHHH-CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEE
Confidence 344445555565544433322 3458999999999999998877543 666777777643 356678999
Q ss_pred EcCC---cccCCCCCCCCEEEEeCC
Q psy1621 146 TTDL---LARGIDVQQVSLVINYDL 167 (224)
Q Consensus 146 ~t~~---~~~Gvdi~~~~~vi~~~~ 167 (224)
+|+- ....+++.++++||.-..
T Consensus 303 ~TPGrLl~~~~l~l~~l~~lVlDEA 327 (666)
T 3o8b_A 303 STYGKFLADGGCSGGAYDIIICDEC 327 (666)
T ss_dssp EEHHHHHHTTSCCTTSCSEEEETTT
T ss_pred ECcHHHHhCCCcccCcccEEEEccc
Confidence 9873 223456667787776444
No 186
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=47.27 E-value=21 Score=28.48 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=35.6
Q ss_pred HHHHHHhccC-CCCcEEEEeCchHHHHHHHHHHHh-CCC-eEEEecCCC
Q psy1621 79 DTLCDLYGTL-SITQAVIFCNTRRKVDWLTESMLK-KEF-TVSAMHGDM 124 (224)
Q Consensus 79 ~~l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~-~~~-~~~~~~g~~ 124 (224)
+.|.+.+... +..++|+||.+-.++...+..|.+ .|+ ++..+.|++
T Consensus 247 ~~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~ 295 (318)
T 3hzu_A 247 EELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSW 295 (318)
T ss_dssp HHHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHH
T ss_pred HHHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcH
Confidence 3455555444 457899999999999999999987 788 488899984
No 187
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=47.15 E-value=70 Score=22.80 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
|...++.+.+.|...|+.+ .++-.++.++-.+.++.|.+.
T Consensus 53 t~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 53 THLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHHh
Confidence 3677899999999999997 556778889989999998644
No 188
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=47.09 E-value=45 Score=25.61 Aligned_cols=73 Identities=8% Similarity=0.038 Sum_probs=45.9
Q ss_pred EEecCCccHHHHHHHHhcc---CCCCcEEEEeCchHHHHHHHHHHHhCCC----eEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 69 IYIEREDWKFDTLCDLYGT---LSITQAVIFCNTRRKVDWLTESMLKKEF----TVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 69 ~~~~~~~~k~~~l~~ll~~---~~~~~~iIf~~t~~~~~~l~~~L~~~~~----~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
+..+....|-.....++.. ....++||.+++++-++.+.+.+.+.+. .+..++|+....+ -..+..
T Consensus 133 l~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 205 (282)
T 1rif_A 133 LNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDA 205 (282)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTC
T ss_pred EEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCC
Confidence 3334444566554433332 1345899999999999998888877532 5667777654322 112456
Q ss_pred eEEEEcC
Q psy1621 142 RVLITTD 148 (224)
Q Consensus 142 ~ilv~t~ 148 (224)
.|+|+|.
T Consensus 206 ~I~v~T~ 212 (282)
T 1rif_A 206 PVVVGTW 212 (282)
T ss_dssp SEEEECH
T ss_pred cEEEEch
Confidence 7999987
No 189
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=47.01 E-value=89 Score=23.45 Aligned_cols=115 Identities=4% Similarity=0.152 Sum_probs=59.8
Q ss_pred hhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCc------hHHHHHHHHHHHhCCCeEEEecCCC
Q psy1621 51 RRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNT------RRKVDWLTESMLKKEFTVSAMHGDM 124 (224)
Q Consensus 51 ~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t------~~~~~~l~~~L~~~~~~~~~~~g~~ 124 (224)
..|++..+...+.....++..+... -...+.+.+.+....++.++... ....+-+.+.+.+.++.+..+.+..
T Consensus 80 ~iPvV~~~~~~~~~~~~~V~~D~~~-~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~ 158 (277)
T 3cs3_A 80 GHSIVVLDRTTEHRNIRQVLLDNRG-GATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQGDF 158 (277)
T ss_dssp TCEEEESSSCCCSTTEEEEEECHHH-HHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCEEEEecCCCCCCCCEEEeCcHH-HHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCeeEEeCCC
Confidence 3455554443332222344444332 23334444444444455444432 2233445556777777665566776
Q ss_pred CHHHHHHHHHHh-hc--CCceEEEEcC----------CcccCCCCCCCCEEEEeC
Q psy1621 125 DQNARDVIMRQF-RS--GSSRVLITTD----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 125 ~~~~r~~~~~~f-~~--~~~~ilv~t~----------~~~~Gvdi~~~~~vi~~~ 166 (224)
+.+.-....+.+ .. .+...++|++ +-..|+.+|+--.|+-+|
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 213 (277)
T 3cs3_A 159 TEPSGYAAAKKILSQPQTEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFD 213 (277)
T ss_dssp SHHHHHHHHHHHTTSCCCSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSS
T ss_pred ChhHHHHHHHHHHhcCCCCCcEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeC
Confidence 666555555554 43 3567777765 346788888654555454
No 190
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=46.80 E-value=19 Score=32.03 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=59.5
Q ss_pred EEEEecCCccHHHHHH-HHhccC-CCCcEEEEeCchHHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621 67 FYIYIEREDWKFDTLC-DLYGTL-SITQAVIFCNTRRKVDWLTESMLK---KEFTVSAMHGDMDQNARDVIMRQFRSGSS 141 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~-~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 141 (224)
.++..+....|-.... -++... .+.++++.++++.-+...++.++. .+.++..++|+....++ ..+..
T Consensus 43 ~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~ 115 (702)
T 2p6r_A 43 LLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDC 115 (702)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTC
T ss_pred EEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCC
Confidence 4555555555665442 222222 467999999999999999998843 36789999998765432 12467
Q ss_pred eEEEEcC-----CcccCCC-CCCCCEEEEe
Q psy1621 142 RVLITTD-----LLARGID-VQQVSLVINY 165 (224)
Q Consensus 142 ~ilv~t~-----~~~~Gvd-i~~~~~vi~~ 165 (224)
+|+|+|+ .+..+-. +.++.+||.-
T Consensus 116 ~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiD 145 (702)
T 2p6r_A 116 DIIVTTSEKADSLIRNRASWIKAVSCLVVD 145 (702)
T ss_dssp SEEEEEHHHHHHHHHTTCSGGGGCCEEEET
T ss_pred CEEEECHHHHHHHHHcChhHHhhcCEEEEe
Confidence 8999997 2223322 5567777743
No 191
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=46.75 E-value=27 Score=24.34 Aligned_cols=47 Identities=11% Similarity=0.231 Sum_probs=26.0
Q ss_pred HHHHHHHhccCCCCcEEE-Ee-CchHHHH----HHHHHHHhCCC---eEEEecCCCC
Q psy1621 78 FDTLCDLYGTLSITQAVI-FC-NTRRKVD----WLTESMLKKEF---TVSAMHGDMD 125 (224)
Q Consensus 78 ~~~l~~ll~~~~~~~~iI-f~-~t~~~~~----~l~~~L~~~~~---~~~~~~g~~~ 125 (224)
+..+...+... ..+.|| +| .+-..+. .++..|.+.|+ ++..+.||+.
T Consensus 56 ~~~l~~~l~~~-~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 56 YEKLAKTLFEE-KKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp HHHHHHHHHHT-TCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHH
T ss_pred HHHHHHHhccc-CCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHH
Confidence 33344444332 334444 48 3433333 44477777785 7888999964
No 192
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=46.14 E-value=52 Score=20.50 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=38.1
Q ss_pred HHHHHHHHhccCCCCcEEEEeC--chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHh
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCN--TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~--t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.+.-+.+.+++ .+.+.+||+| +...+..+...-++.|...-++.+.. +++-.+....|
T Consensus 39 dirdiiksmkd-ngkplvvfvngasqndvnefqneakkegvsydvlkstd-peeltqrvref 98 (112)
T 2lnd_A 39 DIRDIIKSMKD-NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTD-PEELTQRVREF 98 (112)
T ss_dssp HHHHHHHHHTT-CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCC-HHHHHHHHHHH
T ss_pred hHHHHHHHHHh-cCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCC-HHHHHHHHHHH
Confidence 44444444444 4678999998 45667788888888888888787765 44444444444
No 193
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=46.10 E-value=12 Score=25.43 Aligned_cols=35 Identities=9% Similarity=0.251 Sum_probs=27.4
Q ss_pred CCcEEEEeCchHH---------HHHHHHHHHhCCCeEEEecCCC
Q psy1621 90 ITQAVIFCNTRRK---------VDWLTESMLKKEFTVSAMHGDM 124 (224)
Q Consensus 90 ~~~~iIf~~t~~~---------~~~l~~~L~~~~~~~~~~~g~~ 124 (224)
..++++||.+-.. +..+++.|...|+++..+.||+
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~ 126 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 126 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCH
Confidence 4689999987554 3567788888888999999984
No 194
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=45.78 E-value=43 Score=25.66 Aligned_cols=36 Identities=6% Similarity=0.032 Sum_probs=28.0
Q ss_pred CCCcEEEEeCch-HHHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTR-RKVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~-~~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..+++|||.+- ..+..++..|...|+ ++..+.||+
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 113 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGR 113 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCH
Confidence 456899999874 357778888988888 688888874
No 195
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=45.75 E-value=32 Score=26.36 Aligned_cols=36 Identities=6% Similarity=-0.047 Sum_probs=28.6
Q ss_pred CCCcEEEEeCchH-HHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRR-KVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~-~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..+++|||.+-. .+..++..|+..|+ ++..+.||+
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 4567899998765 77888889999988 588888874
No 196
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=45.34 E-value=98 Score=23.47 Aligned_cols=60 Identities=10% Similarity=0.106 Sum_probs=42.4
Q ss_pred HHHHHHHHhccC---------CCCcEEEEeCchHHHHHHHHHHHhCC--CeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 77 KFDTLCDLYGTL---------SITQAVIFCNTRRKVDWLTESMLKKE--FTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 77 k~~~l~~ll~~~---------~~~~~iIf~~t~~~~~~l~~~L~~~~--~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+...|..++... ..+.+.|++++-..+++..+.|.+.+ -++.++ ....++.++...+.++
T Consensus 4 ~v~~L~~lL~g~~~p~~il~grd~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~---~~~~~~~~i~~~l~~~ 74 (227)
T 3gr1_A 4 MAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQVLARGDYDKNARVI---NENEENKRISIWLDTY 74 (227)
T ss_dssp CSHHHHHHTCSCSCSCEEEECTTSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEE---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCcEEEEEccccHHHHHHHHHHhcCCcCCeEEE---ehHHHHHHHHHHHHhc
Confidence 445556666433 34679999999999999999998876 455555 4566777777777654
No 197
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=45.34 E-value=58 Score=22.71 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
|...++.+.+.|.+.|+.+. ++..++.++-.+.++.|.+.
T Consensus 39 t~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHHh
Confidence 55678999999999999965 56678899999999999754
No 198
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=44.82 E-value=19 Score=32.17 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=60.3
Q ss_pred eEEEEEecCCccHHHHH-HHHhccC--CCCcEEEEeCchHHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 65 RQFYIYIEREDWKFDTL-CDLYGTL--SITQAVIFCNTRRKVDWLTESMLK---KEFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 65 ~~~~~~~~~~~~k~~~l-~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~---~~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
...++..+....|-... .-++... .+.++++.++++.-+..+++.++. .+..+..++|+.....+. .
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~ 112 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------L 112 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------G
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------c
Confidence 34555556556676543 2333221 357999999999999999998853 378999999987654431 2
Q ss_pred CCceEEEEcCC-----cccCCC-CCCCCEEEEeC
Q psy1621 139 GSSRVLITTDL-----LARGID-VQQVSLVINYD 166 (224)
Q Consensus 139 ~~~~ilv~t~~-----~~~Gvd-i~~~~~vi~~~ 166 (224)
++.+|+|+|+- +..+.. +..+++||.-.
T Consensus 113 ~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 146 (720)
T 2zj8_A 113 GKYDIIIATAEKFDSLLRHGSSWIKDVKILVADE 146 (720)
T ss_dssp GGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEET
T ss_pred CCCCEEEECHHHHHHHHHcChhhhhcCCEEEEEC
Confidence 45789999972 222222 45566666433
No 199
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=44.70 E-value=88 Score=22.73 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=39.8
Q ss_pred CCCcEEEEeCc--------------hHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 89 SITQAVIFCNT--------------RRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 89 ~~~~~iIf~~t--------------~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+.+.+|||.+. ...++.+.+.|..+|+.+.. |-.++.++-.+.+++|.+.
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~-~~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKC-FNDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHTS
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHhhh
Confidence 34568888774 36799999999999999754 5578899999999998754
No 200
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=44.63 E-value=19 Score=31.16 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=34.7
Q ss_pred HHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCC
Q psy1621 83 DLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 83 ~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
+.+..+ +..++++||.+-..+...+..|++.|+.+..+.|++.
T Consensus 533 ~~~~~l~~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~ 576 (588)
T 3ics_A 533 DRLEEVPVDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFK 576 (588)
T ss_dssp TCGGGSCSSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred HHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHH
Confidence 333334 3568999999999999999999999999888889864
No 201
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=44.36 E-value=40 Score=26.74 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=33.2
Q ss_pred HHHHHhccC---CCCcEEEEeCchH-HHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 80 TLCDLYGTL---SITQAVIFCNTRR-KVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 80 ~l~~ll~~~---~~~~~iIf~~t~~-~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
.+.+.+... +..++||||.+-. .+...+..|+..|+ ++..+.||+
T Consensus 98 ~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 98 QFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 444444442 4578999998765 68888899999988 588888874
No 202
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=44.35 E-value=20 Score=30.79 Aligned_cols=37 Identities=8% Similarity=0.202 Sum_probs=32.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
+..++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 3568999999999999999999999999999999853
No 203
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=44.26 E-value=44 Score=25.61 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=30.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh-CCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLK-KEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~-~~~-~~~~~~g~~ 124 (224)
+..++|+||.+-..+...+..|.+ .|+ ++..+.|++
T Consensus 225 ~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 225 NSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 457899999998888888888985 788 588999984
No 204
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=44.21 E-value=66 Score=21.18 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=45.3
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc----CCceE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS----GSSRV 143 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~----~~~~i 143 (224)
+..++....-...+..++......-.+..+.+..++. +.+....+.+.++.-.++.......++.+++ ....|
T Consensus 8 ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~---~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 8 VLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKAL---YQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHH---HHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHH---HHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCE
Confidence 4445554445566677776654333455555555443 4455566778787777766666667777765 23455
Q ss_pred EEEcC
Q psy1621 144 LITTD 148 (224)
Q Consensus 144 lv~t~ 148 (224)
++.|.
T Consensus 85 i~~s~ 89 (144)
T 3kht_A 85 VILTD 89 (144)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 55554
No 205
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=43.71 E-value=32 Score=26.56 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=28.1
Q ss_pred CCCcEEEEeCchH-HHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRR-KVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~-~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..++|+||.+-. .+...+..|+..|+ ++..+.||+
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 115 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGR 115 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 4568999998765 57788888988888 588888864
No 206
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=42.83 E-value=1.7e+02 Score=25.87 Aligned_cols=108 Identities=9% Similarity=0.109 Sum_probs=65.4
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCC--CeEEEec--------------------CCC-
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKE--FTVSAMH--------------------GDM- 124 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~--~~~~~~~--------------------g~~- 124 (224)
..-+.. ..|.-.+..++... +.++||.+++...|..+++.|+..- ..+.++- ...
T Consensus 37 l~g~~g-s~k~~~~a~~~~~~-~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~ 114 (661)
T 2d7d_A 37 LLGATG-TGKTFTVSNLIKEV-NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAS 114 (661)
T ss_dssp EEECTT-SCHHHHHHHHHHHH-CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEE
T ss_pred EECcCC-cHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhcc
Confidence 333444 33766666666553 3589999999999999999998762 2343332 111
Q ss_pred -C---HHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC----CCEEEEeCCCCChhHHHHH
Q psy1621 125 -D---QNARDVIMRQFRSGSSRVLITTDLLARGIDVQQ----VSLVINYDLPSNRENYIHR 177 (224)
Q Consensus 125 -~---~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~~----~~~vi~~~~p~s~~~~~q~ 177 (224)
+ ...|..++.++.+++..|+|+|-.+-.|+=-|. ....+..+...+...+.++
T Consensus 115 ~~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~ 175 (661)
T 2d7d_A 115 INDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRK 175 (661)
T ss_dssp ECHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHH
Confidence 1 457889999987776668888765435543221 1233344444454444443
No 207
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=42.35 E-value=34 Score=30.46 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=58.8
Q ss_pred EEEEEecCCccHHHHHHH-HhccC--CCCcEEEEeCchHHHHHHHHHHHh---CCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 66 QFYIYIEREDWKFDTLCD-LYGTL--SITQAVIFCNTRRKVDWLTESMLK---KEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~l~~-ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
..++..+....|-..... ++... .+.++++.++++.-+...++.++. .+..+..++|+....++ .+ +
T Consensus 48 ~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~ 120 (715)
T 2va8_A 48 RLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--K 120 (715)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--G
T ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--C
Confidence 345556666667665533 22221 367999999999999988888743 37889999998766442 11 3
Q ss_pred CceEEEEcC-----CcccCCC-CCCCCEEEE
Q psy1621 140 SSRVLITTD-----LLARGID-VQQVSLVIN 164 (224)
Q Consensus 140 ~~~ilv~t~-----~~~~Gvd-i~~~~~vi~ 164 (224)
..+|+|+|+ .+..+.. +.++++||.
T Consensus 121 ~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi 151 (715)
T 2va8_A 121 NYDIIITTYEKLDSLWRHRPEWLNEVNYFVL 151 (715)
T ss_dssp GCSEEEECHHHHHHHHHHCCGGGGGEEEEEE
T ss_pred CCCEEEEcHHHHHHHHhCChhHhhccCEEEE
Confidence 568999997 2222222 445666664
No 208
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=41.52 E-value=94 Score=22.19 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
+...++.+.+.|.+.|+.+ .++..++.++-.+.+++|.+
T Consensus 56 t~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 56 GDVDHSTLVTLFKLLGYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp HHHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 3457899999999999997 56678889999999999876
No 209
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=41.48 E-value=64 Score=25.74 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=40.0
Q ss_pred CCCcEEEEeCc------------hHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 89 SITQAVIFCNT------------RRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 89 ~~~~~iIf~~t------------~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
+.+-+|||.|. ...++.+.+.|++.|+.+ .++..++.++-.+.+++|.+
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTI-FPYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEE-EEECSCCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEccCCCHHHHHHHHHHHHH
Confidence 34567887765 378999999999999997 56778999999999999964
No 210
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=41.29 E-value=1.3e+02 Score=23.73 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhCCCe----EEEecCCCCHHHHHHHHHHh-hc-CCceEEEEcC----------CcccCCCCCCCCEEEE
Q psy1621 101 RKVDWLTESMLKKEFT----VSAMHGDMDQNARDVIMRQF-RS-GSSRVLITTD----------LLARGIDVQQVSLVIN 164 (224)
Q Consensus 101 ~~~~~l~~~L~~~~~~----~~~~~g~~~~~~r~~~~~~f-~~-~~~~ilv~t~----------~~~~Gvdi~~~~~vi~ 164 (224)
...+-+.+.|.+.++. .....+..+.+.-....+++ .. .....++|.+ +-..|+.+|+--.|+-
T Consensus 223 ~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvig 302 (366)
T 3h5t_A 223 DRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTG 302 (366)
T ss_dssp HHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 3455566667777654 23334555665555555554 32 3567777765 3578999987555665
Q ss_pred eC
Q psy1621 165 YD 166 (224)
Q Consensus 165 ~~ 166 (224)
||
T Consensus 303 fD 304 (366)
T 3h5t_A 303 FD 304 (366)
T ss_dssp EE
T ss_pred EC
Confidence 55
No 211
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=40.91 E-value=81 Score=25.11 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+...++.+++.|++.|+.+. ++-.++.++-.+.+++|.+.
T Consensus 82 t~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 82 TNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 37889999999999999974 56688999999999999754
No 212
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=40.82 E-value=59 Score=30.49 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=48.3
Q ss_pred EEEEecCCccHHHHHHHHh-cc-CCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEE
Q psy1621 67 FYIYIEREDWKFDTLCDLY-GT-LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVL 144 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll-~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~il 144 (224)
.++..+....|-....-.+ .. ..+.++|+.+++++-+...++.+.+....+..++|+.+.. ....|+
T Consensus 104 vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~Iv 172 (1010)
T 2xgj_A 104 VLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCL 172 (1010)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEE
T ss_pred EEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEE
Confidence 4555555555765432222 21 1467999999999999999998877644888899987532 245688
Q ss_pred EEcC
Q psy1621 145 ITTD 148 (224)
Q Consensus 145 v~t~ 148 (224)
|+|+
T Consensus 173 V~Tp 176 (1010)
T 2xgj_A 173 VMTT 176 (1010)
T ss_dssp EEEH
T ss_pred EEcH
Confidence 8886
No 213
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=40.70 E-value=64 Score=19.99 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHh
Q psy1621 102 KVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 102 ~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
.+..+.+.|.+.++....+.=..+++.+....+..
T Consensus 20 ~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~ 54 (93)
T 1t1v_A 20 QQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLA 54 (93)
T ss_dssp HHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh
Confidence 33788888999988877777666666666665554
No 214
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=40.55 E-value=81 Score=24.51 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+...++.+++.|++.|+.+. ++-.++.++-.+.+++|.+.
T Consensus 54 ~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 54 TNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 47889999999999999974 56688999999999999754
No 215
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=39.88 E-value=77 Score=20.67 Aligned_cols=108 Identities=9% Similarity=0.091 Sum_probs=61.7
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc----CCceE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS----GSSRV 143 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~----~~~~i 143 (224)
+..++........+..++.... .. +..+.+...+ .+.+.+..+.+..+.-.++.......++.+++ ....|
T Consensus 9 iLivdd~~~~~~~l~~~l~~~g-~~-v~~~~~~~~a---~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (140)
T 3grc_A 9 ILICEDDPDIARLLNLMLEKGG-FD-SDMVHSAAQA---LEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAI 83 (140)
T ss_dssp EEEECSCHHHHHHHHHHHHHTT-CE-EEEECSHHHH---HHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCC-Ce-EEEECCHHHH---HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 4455555445666777776633 23 4455554443 34556667788888766665555566666654 35567
Q ss_pred EEEcCCcc------cCCCCCCCCEEEEeCCCCChhHHHHHHhhccC
Q psy1621 144 LITTDLLA------RGIDVQQVSLVINYDLPSNRENYIHRIGRGGR 183 (224)
Q Consensus 144 lv~t~~~~------~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R 183 (224)
++.|.... ..+.. ++.. .+..|.+...+.+++.++-+
T Consensus 84 i~~s~~~~~~~~~~~~~~~-g~~~--~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 84 VVVSANAREGELEFNSQPL-AVST--WLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp EEECTTHHHHHHHHCCTTT-CCCE--EECSSCCHHHHHHHHHHHHH
T ss_pred EEEecCCChHHHHHHhhhc-CCCE--EEeCCCCHHHHHHHHHHHHH
Confidence 77765321 22222 2222 34568888888887776543
No 216
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=39.82 E-value=19 Score=28.21 Aligned_cols=37 Identities=8% Similarity=-0.008 Sum_probs=30.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~ 125 (224)
+..++|+||.+-.++...+..|...|+. +..+.|++.
T Consensus 239 ~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 239 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp TTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 4578999999988888888889988884 888999853
No 217
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=39.75 E-value=1.2e+02 Score=23.88 Aligned_cols=63 Identities=6% Similarity=0.104 Sum_probs=41.6
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
-.++|-+.+.+.+......+.+.+..+..-+.+.++++...+.+. .+ +..++++.+ ++.|+|+
T Consensus 89 aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~a-a~-~~~~~~a~N-~SiGv~l 151 (288)
T 3ijp_A 89 TEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADF-AK-YTTIVKSGN-MSLGVNL 151 (288)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHH-HT-TSEEEECSC-CCHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-hC-cCCEEEECC-CcHHHHH
Confidence 356776667777777777888889998887778887765554444 33 366766655 3445444
No 218
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=39.72 E-value=18 Score=28.62 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=34.3
Q ss_pred HHHHHHhcc--C-CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 79 DTLCDLYGT--L-SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 79 ~~l~~ll~~--~-~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+.+.+.+.. . +..++++||.+-.++...+..|...|+ ++..+.|++.
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHH
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 344444442 2 457899999987777788888988888 6888888854
No 219
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=39.62 E-value=78 Score=20.72 Aligned_cols=108 Identities=11% Similarity=0.015 Sum_probs=52.9
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC--CceEEE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG--SSRVLI 145 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~--~~~ilv 145 (224)
+..++....-...+..++....+-.++-.+.+...+ .+.+....+.+..+.-.++...-...++.+++. ...|++
T Consensus 12 iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a---l~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 88 (143)
T 2qv0_A 12 VIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDV---LKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVF 88 (143)
T ss_dssp EEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHH---HHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHH---HHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEE
Confidence 444555443556666666653333333244444433 344555667787777666544445555665542 334555
Q ss_pred EcCCccc---CCCCCCCCEEEEeCCCCChhHHHHHHhhc
Q psy1621 146 TTDLLAR---GIDVQQVSLVINYDLPSNRENYIHRIGRG 181 (224)
Q Consensus 146 ~t~~~~~---Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~ 181 (224)
.|..... .+. .++..+ +..|.+...+.+.+.++
T Consensus 89 ~s~~~~~~~~~~~-~g~~~~--l~KP~~~~~l~~~i~~~ 124 (143)
T 2qv0_A 89 ITAWKEHAVEAFE-LEAFDY--ILKPYQESRIINMLQKL 124 (143)
T ss_dssp EESCCTTHHHHHH-TTCSEE--EESSCCHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHh-CCcceE--EeCCCCHHHHHHHHHHH
Confidence 5543110 011 122222 23466766666666554
No 220
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=39.56 E-value=97 Score=22.93 Aligned_cols=47 Identities=6% Similarity=0.124 Sum_probs=34.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCC--CeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKE--FTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~--~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
.+.+.|++++-..+++..+.|.+.+ -++.++- ...++.++...+.++
T Consensus 26 D~~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi~---~~~e~~~i~~~L~~~ 74 (197)
T 3gr0_A 26 DKMLYVAAQNERDTLWARQVLARGDYDKNARVIN---ENEENKRISIWLDTY 74 (197)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHHTCTTTEEEEC---HHHHHHHHHHHHHHH
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCCCCCcEEee---hHHHHHHHHHHHHhc
Confidence 4679999999999999999997765 3454444 456666666666554
No 221
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=39.10 E-value=1.2e+02 Score=24.75 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=38.6
Q ss_pred CCCcEEEEeCch-------HHHHHHHHHHHhCCCeEEEe---------cCCCCHHHHH-HHHHHhhcCCceEEEEcC
Q psy1621 89 SITQAVIFCNTR-------RKVDWLTESMLKKEFTVSAM---------HGDMDQNARD-VIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 89 ~~~~~iIf~~t~-------~~~~~l~~~L~~~~~~~~~~---------~g~~~~~~r~-~~~~~f~~~~~~ilv~t~ 148 (224)
+++.+-|++++. +..+...+.|++.|+.+... .++ ++++|. ...+.|...+++.++|+-
T Consensus 42 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 42 VGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSG-TIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp TTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCC-CHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 456777777662 34566677888888877542 123 455555 455567888999888875
No 222
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=38.86 E-value=46 Score=28.20 Aligned_cols=91 Identities=10% Similarity=0.074 Sum_probs=50.5
Q ss_pred EEEEEecCCccHHHH-HHHHhccC----CCCcEEEEeCchHHHHHHHHHHHhCC----CeEEEecCCCCHHHHHHHHHHh
Q psy1621 66 QFYIYIEREDWKFDT-LCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKKE----FTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~-l~~ll~~~----~~~~~iIf~~t~~~~~~l~~~L~~~~----~~~~~~~g~~~~~~r~~~~~~f 136 (224)
..++..+....|-.. +.-++... .+.++|+.++++.-+..+++.+.+.. ..+....++.....
T Consensus 160 ~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 231 (508)
T 3fho_A 160 NMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG-------- 231 (508)
T ss_dssp CEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-----------------
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc--------
Confidence 344555555556654 33333322 34589999999999999999887752 23333333321111
Q ss_pred hcCCceEEEEcCCc------ccCCCCCCCCEEEE
Q psy1621 137 RSGSSRVLITTDLL------ARGIDVQQVSLVIN 164 (224)
Q Consensus 137 ~~~~~~ilv~t~~~------~~Gvdi~~~~~vi~ 164 (224)
......|+|+|+.. ...+++..++.||.
T Consensus 232 ~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 232 AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp -CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 12356899999631 22456667777764
No 223
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=38.30 E-value=87 Score=20.84 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=54.2
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHH------HhCCCeEEEecCCCCHHHHHHHHHHhhc---
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESM------LKKEFTVSAMHGDMDQNARDVIMRQFRS--- 138 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L------~~~~~~~~~~~g~~~~~~r~~~~~~f~~--- 138 (224)
+..++........+..++........+..+.+..++....+.. ....+.+.++.-.++...-...++.+++
T Consensus 7 ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~ 86 (152)
T 3heb_A 7 IVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPH 86 (152)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTT
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhccc
Confidence 3445554445666777776654332344555555443322210 2345677777666655445555666554
Q ss_pred -CCceEEEEcCCcc-----cCCCCCCCCEEEEeCCCCChhHHHHHHhhcc
Q psy1621 139 -GSSRVLITTDLLA-----RGIDVQQVSLVINYDLPSNRENYIHRIGRGG 182 (224)
Q Consensus 139 -~~~~ilv~t~~~~-----~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~ 182 (224)
....|++.|.... ..+.. ++..+ +.-|.+...+.+++.+++
T Consensus 87 ~~~~pii~~t~~~~~~~~~~~~~~-g~~~~--l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 87 TRRSPVVILTTTDDQREIQRCYDL-GANVY--ITKPVNYENFANAIRQLG 133 (152)
T ss_dssp TTTSCEEEEESCCCHHHHHHHHHT-TCSEE--EECCSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHC-CCcEE--EeCCCCHHHHHHHHHHHH
Confidence 2445555554221 11111 12222 234666666666555443
No 224
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=38.01 E-value=47 Score=27.51 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=34.7
Q ss_pred HHHHHhc--cC-CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 80 TLCDLYG--TL-SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 80 ~l~~ll~--~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
.|.+.+. .. +..++++||.+-..+...+..|...|+ ++..+.|++
T Consensus 345 ~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~ 393 (423)
T 2wlr_A 345 DITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGW 393 (423)
T ss_dssp HHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccH
Confidence 4455553 22 457899999998888888889999998 588899984
No 225
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=37.25 E-value=33 Score=29.49 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=31.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecC-CC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHG-DM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g-~~ 124 (224)
+..+++++|.+-..+...+..|++.|+++..+.| |+
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~ 357 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSE 357 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCCh
Confidence 4578999999888888888899999999999999 75
No 226
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=37.19 E-value=48 Score=24.64 Aligned_cols=33 Identities=6% Similarity=-0.124 Sum_probs=27.6
Q ss_pred CCcEEEEeCchH-HHHHHHHHHHhCCC-eEEEecCC
Q psy1621 90 ITQAVIFCNTRR-KVDWLTESMLKKEF-TVSAMHGD 123 (224)
Q Consensus 90 ~~~~iIf~~t~~-~~~~l~~~L~~~~~-~~~~~~g~ 123 (224)
..+++++|.+-. .+..++..|+ .|+ ++..+.||
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 578999998866 7888888899 888 48888888
No 227
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=37.19 E-value=1.3e+02 Score=24.16 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=37.7
Q ss_pred CCCcEEEEeCch-------HHHHHHHHHHHhCCCeEEEe---------cCCCCHHHHH-HHHHHhhcCCceEEEEcC
Q psy1621 89 SITQAVIFCNTR-------RKVDWLTESMLKKEFTVSAM---------HGDMDQNARD-VIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 89 ~~~~~iIf~~t~-------~~~~~l~~~L~~~~~~~~~~---------~g~~~~~~r~-~~~~~f~~~~~~ilv~t~ 148 (224)
+++.+-|.+++. +..+...+.|++.|+.+..- .++ ++++|. ...+.|...+++.++|+-
T Consensus 12 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 12 YGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSG-SIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp TTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCC-CHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 355666666654 34556667788888876542 123 455555 455567888999988875
No 228
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=37.10 E-value=91 Score=20.72 Aligned_cols=112 Identities=12% Similarity=0.137 Sum_probs=61.3
Q ss_pred EEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc--CCceEE
Q psy1621 67 FYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS--GSSRVL 144 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~--~~~~il 144 (224)
.+..++....-...+..++........+..+.+..++ .+.+.+..+.+.++.-.++...-...++.+++ ....|+
T Consensus 22 ~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a---l~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 98 (150)
T 4e7p_A 22 KVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEA---IQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVV 98 (150)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHH---HHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHH---HHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 4555555554566677777654433445556665544 34556667788888776665555555555553 244555
Q ss_pred EEcCCcc-----cCCCCCCCCEEEEeCCCCChhHHHHHHhhccCC
Q psy1621 145 ITTDLLA-----RGIDVQQVSLVINYDLPSNRENYIHRIGRGGRF 184 (224)
Q Consensus 145 v~t~~~~-----~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~ 184 (224)
+.|.... ..+.. ++..+ +.-|.+...+.+++.++.+.
T Consensus 99 ~ls~~~~~~~~~~~~~~-g~~~~--l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 99 VVTTFKRAGYFERAVKA-GVDAY--VLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp EEESCCCHHHHHHHHHT-TCSEE--EETTSCHHHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHC-CCcEE--EecCCCHHHHHHHHHHHHcC
Confidence 5554221 11111 12222 23477777777777766553
No 229
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=36.92 E-value=1.1e+02 Score=23.73 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=39.6
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 90 ITQAVIFCNT--------------RRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 90 ~~~~iIf~~t--------------~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
.+-+|||.|. ...++.+.+.|++.|+.+. ++..++.++-.+.+++|.+.
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 4567888764 4789999999999999975 56688999999999998653
No 230
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=36.83 E-value=83 Score=20.19 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=50.5
Q ss_pred EecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceE
Q psy1621 70 YIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRV 143 (224)
Q Consensus 70 ~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~i 143 (224)
.+...+.--..+.++..+....+++|..|.+.-...+.+.+++.|+.+..+--.....+-+..-....+....+
T Consensus 31 dvndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyev 104 (134)
T 2lci_A 31 DVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEV 104 (134)
T ss_dssp EECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEE
T ss_pred ecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeee
Confidence 34433323344455555667889999999999888888999999999988888777766554444444444443
No 231
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=36.65 E-value=1.2e+02 Score=21.97 Aligned_cols=114 Identities=4% Similarity=-0.145 Sum_probs=66.4
Q ss_pred EEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc---CCceE
Q psy1621 67 FYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS---GSSRV 143 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~---~~~~i 143 (224)
.+..++++..-...+..++....+..++..+.+ ..+.+...+....+.+..+.-.|+...-...++.+++ ....|
T Consensus 9 ~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~--~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~i 86 (225)
T 3klo_A 9 NVRMLSDVCMQSRLLKEALESKLPLALEITPFS--ELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKE 86 (225)
T ss_dssp EEEEESCCSHHHHHHHHHHHHHSSEEEEEECGG--GHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEE
T ss_pred EEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCC--cHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcE
Confidence 345555555466677777764343444333322 2223333344556788888888887777777777765 35666
Q ss_pred EEEcCCcc-----cCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCC
Q psy1621 144 LITTDLLA-----RGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFG 185 (224)
Q Consensus 144 lv~t~~~~-----~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g 185 (224)
++.|.... .++.. +++ -.+.-|.++..+..++.++.+.+
T Consensus 87 i~lt~~~~~~~~~~~~~~-Ga~--~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 87 VIINCPQDIEHKLLFKWN-NLA--GVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp EEEEECTTCCHHHHTTST-TEE--EEEETTCCHHHHHHHHHHHHTTC
T ss_pred EEEECCcchhHHHHHHHh-CCC--EEEecCCCHHHHHHHHHHHHCCC
Confidence 66664322 22222 122 23446889999999998876643
No 232
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=36.00 E-value=1.4e+02 Score=22.59 Aligned_cols=115 Identities=11% Similarity=0.060 Sum_probs=58.9
Q ss_pred hhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCc------hHHHHHHHHHHHhCCCeE---EEec
Q psy1621 51 RRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNT------RRKVDWLTESMLKKEFTV---SAMH 121 (224)
Q Consensus 51 ~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t------~~~~~~l~~~L~~~~~~~---~~~~ 121 (224)
..|++..+.........++..++.. -...+.+.+.+....++.++... ....+-+.+.|.+.++.+ ....
T Consensus 88 ~iPvV~~~~~~~~~~~~~V~~D~~~-~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~ 166 (294)
T 3qk7_A 88 NFPFLALGRSHLPKPYAWFDFDNHA-GASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQK 166 (294)
T ss_dssp TCCEEEESCCCCSSCCEEEEECHHH-HHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEE
T ss_pred CCCEEEECCCCCCCCCCEEEcChHH-HHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeec
Confidence 3455555543333333444555433 33344444444444444444322 233444555666666542 2445
Q ss_pred CCCCHHHHHHHHHHh-hc-CCceEEEEcC----------CcccCCCCCCCCEEEEeC
Q psy1621 122 GDMDQNARDVIMRQF-RS-GSSRVLITTD----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 122 g~~~~~~r~~~~~~f-~~-~~~~ilv~t~----------~~~~Gvdi~~~~~vi~~~ 166 (224)
+..+.+.-....+++ .. .....++|++ +-..|+.+|+--.|+-||
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 167 ADPTRPGGYLAASRLLALEVPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp ECSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEET
T ss_pred CCCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 666665555555554 43 3566777765 356799998655555554
No 233
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=35.99 E-value=1.5e+02 Score=23.77 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=36.6
Q ss_pred CCcEEEEeCc-------hHHHHHHHHHHHhCCCeEEEec---------CCCCHHHHH-HHHHHhhcCCceEEEEcC
Q psy1621 90 ITQAVIFCNT-------RRKVDWLTESMLKKEFTVSAMH---------GDMDQNARD-VIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 90 ~~~~iIf~~t-------~~~~~~l~~~L~~~~~~~~~~~---------g~~~~~~r~-~~~~~f~~~~~~ilv~t~ 148 (224)
++.+-|++++ .+..+...+.|++.|+.+.... ++ ++++|. ...+.|...+++.++|+-
T Consensus 12 GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 12 GDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASS-SISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp TCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSC-CHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred cCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCC-CHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 4555555554 3456666778888888765421 22 355555 455557888999888865
No 234
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=35.86 E-value=1.4e+02 Score=23.10 Aligned_cols=62 Identities=6% Similarity=0.101 Sum_probs=40.7
Q ss_pred cEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q psy1621 92 QAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDV 156 (224)
Q Consensus 92 ~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi 156 (224)
.++|-+.+.+.+......+.+.+..+..-+.+.++++...+.+.-+ +..++++.+ ++.|+|+
T Consensus 75 DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~--~~~vv~a~N-~s~Gv~l 136 (272)
T 4f3y_A 75 DYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGE--KIALVFSAN-MSVGVNV 136 (272)
T ss_dssp SEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTT--TSEEEECSC-CCHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhc--cCCEEEECC-CCHHHHH
Confidence 4666666677777777777888989888788888876655544433 356666655 3444443
No 235
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=35.21 E-value=1.6e+02 Score=22.86 Aligned_cols=64 Identities=9% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCeEE---EecCCCCHHHHHHHHHHhhcCCceEEEEcC----------CcccCCCCCCCCEEEEeCC
Q psy1621 104 DWLTESMLKKEFTVS---AMHGDMDQNARDVIMRQFRSGSSRVLITTD----------LLARGIDVQQVSLVINYDL 167 (224)
Q Consensus 104 ~~l~~~L~~~~~~~~---~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~----------~~~~Gvdi~~~~~vi~~~~ 167 (224)
+-+.+.|.+.++.+. .+.+..+.+.-....+.+-+.....++|.+ +-..|+.+|+--.|+-||-
T Consensus 200 ~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~~~d~~A~g~~~al~~~G~~vP~disvig~D~ 276 (332)
T 2o20_A 200 VGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGAN 276 (332)
T ss_dssp HHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEESSC
T ss_pred HHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEECChHHHHHHHHHHHHcCCCCccCEEEEEeCC
Confidence 345556677776432 345665655544444444322666677755 2467999887556666653
No 236
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=34.98 E-value=1.5e+02 Score=23.51 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=37.2
Q ss_pred CCCcEEEEeCc-------hHHHHHHHHHHHhCCCeEEEe---------cCCCCHHHHH-HHHHHhhcCCceEEEEcC
Q psy1621 89 SITQAVIFCNT-------RRKVDWLTESMLKKEFTVSAM---------HGDMDQNARD-VIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 89 ~~~~~iIf~~t-------~~~~~~l~~~L~~~~~~~~~~---------~g~~~~~~r~-~~~~~f~~~~~~ilv~t~ 148 (224)
+++++-|.+++ .+..+...+.|++.|+++..- .++ ++++|. ...+.|.+.+++.++|+-
T Consensus 11 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 11 QGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSS-SIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp TTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSC-CHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccC-CHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 35566666655 244566667788888776542 123 355554 555568888999888874
No 237
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=34.90 E-value=1.7e+02 Score=24.01 Aligned_cols=44 Identities=9% Similarity=0.050 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCeEEEecCC---CCHHHHHHHHHHhhcCCceEEEE
Q psy1621 103 VDWLTESMLKKEFTVSAMHGD---MDQNARDVIMRQFRSGSSRVLIT 146 (224)
Q Consensus 103 ~~~l~~~L~~~~~~~~~~~g~---~~~~~r~~~~~~f~~~~~~ilv~ 146 (224)
.+.+.+.|.+.++.+..+.+. -+.+.-.+..+.+++...+++|+
T Consensus 61 ~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 107 (407)
T 1vlj_A 61 YDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLG 107 (407)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 445555555555555444331 12334444455555555555554
No 238
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=34.50 E-value=1.1e+02 Score=23.42 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+...++.+++.|++.|+.+. .+-.++.++-.+.+++|.+.
T Consensus 39 ~~~D~~~l~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 39 TDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 45589999999999999974 66788999999999999754
No 239
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.46 E-value=77 Score=20.55 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=31.1
Q ss_pred cEEEEeC-chHHHH------HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHh
Q psy1621 92 QAVIFCN-TRRKVD------WLTESMLKKEFTVSAMHGDMDQNARDVIMRQF 136 (224)
Q Consensus 92 ~~iIf~~-t~~~~~------~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f 136 (224)
+++||+. ....|. .+.+.|..+++....+.=...++.+....+.+
T Consensus 9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 9 VIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred EEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 4666652 333444 78889999998888877776777777666654
No 240
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=33.46 E-value=1.7e+02 Score=22.71 Aligned_cols=64 Identities=14% Similarity=0.255 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCeE---EEecCCCCHHHHHHHHHHhh--cCCceEEEEcC----------CcccCCCCCCCCEEEEeC
Q psy1621 103 VDWLTESMLKKEFTV---SAMHGDMDQNARDVIMRQFR--SGSSRVLITTD----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 103 ~~~l~~~L~~~~~~~---~~~~g~~~~~~r~~~~~~f~--~~~~~ilv~t~----------~~~~Gvdi~~~~~vi~~~ 166 (224)
.+-+.+.|.+.++.+ ..+.+..+.+.-.+..+.+- ..+...++|.+ +-..|+.+|+--.|+-||
T Consensus 200 ~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 200 LAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 344555667776543 24566666666555555553 33566777765 346799998655566555
No 241
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=33.41 E-value=1.6e+02 Score=22.41 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=39.1
Q ss_pred cEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC-CceEEEEcC
Q psy1621 92 QAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG-SSRVLITTD 148 (224)
Q Consensus 92 ~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~-~~~ilv~t~ 148 (224)
.++|=+.+.+.+......+.+.+..+.+-..+++.++...+.+.-++. ...++++.+
T Consensus 47 DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N 104 (245)
T 1p9l_A 47 EVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPN 104 (245)
T ss_dssp CEEEECSCTTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSC
T ss_pred cEEEEccChHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECC
Confidence 466634466666777777778888888777788887666655555544 667777766
No 242
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=32.52 E-value=38 Score=23.54 Aligned_cols=38 Identities=3% Similarity=0.038 Sum_probs=24.0
Q ss_pred CCCcEEEEeC-chHHHHHHHHHH--------HhCCC-eEEEecCCCCH
Q psy1621 89 SITQAVIFCN-TRRKVDWLTESM--------LKKEF-TVSAMHGDMDQ 126 (224)
Q Consensus 89 ~~~~~iIf~~-t~~~~~~l~~~L--------~~~~~-~~~~~~g~~~~ 126 (224)
+..++++||. +-......+..| +..|+ ++..+.||+..
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 3467888897 544444444444 33677 78889999743
No 243
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=32.31 E-value=1.7e+02 Score=22.30 Aligned_cols=114 Identities=9% Similarity=0.153 Sum_probs=61.3
Q ss_pred hhhhhhccCcccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCc------hHHHHHHHHHHHhCCCeEE---Eec
Q psy1621 51 RRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNT------RRKVDWLTESMLKKEFTVS---AMH 121 (224)
Q Consensus 51 ~~~~~i~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t------~~~~~~l~~~L~~~~~~~~---~~~ 121 (224)
..|++..+..... ...++..++.. -...+.+.+.+....++.++... ....+-+.+.|.+.++.+. ...
T Consensus 94 ~iPvV~i~~~~~~-~~~~V~~D~~~-~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~ 171 (303)
T 3kke_A 94 GVPAVTINSRVPG-RVGSVILDDQK-GGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVD 171 (303)
T ss_dssp TSCEEEESCCCTT-CCCEEEECHHH-HHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEE
T ss_pred CCCEEEECCcCCC-CCCEEEECcHH-HHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEe
Confidence 4566655554443 33344454433 33334444444444454444332 2334445556777766532 455
Q ss_pred CCCCHHHHHHHHHHh-----hc--CCceEEEEcC----------CcccCCCCCCCCEEEEeC
Q psy1621 122 GDMDQNARDVIMRQF-----RS--GSSRVLITTD----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 122 g~~~~~~r~~~~~~f-----~~--~~~~ilv~t~----------~~~~Gvdi~~~~~vi~~~ 166 (224)
+..+.+.-....+++ -+ .+...++|++ +-..|+.+|+--.|+-+|
T Consensus 172 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D 233 (303)
T 3kke_A 172 AGWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIVGIN 233 (303)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred cCCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEc
Confidence 666666655555655 32 3566777765 346899998755666665
No 244
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=31.61 E-value=1.3e+02 Score=22.58 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=37.0
Q ss_pred HHHHHHHHhccCCCCcEEEEeC-----chHHHHHHHHHHHhCCCeEEEecCC
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCN-----TRRKVDWLTESMLKKEFTVSAMHGD 123 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~-----t~~~~~~l~~~L~~~~~~~~~~~g~ 123 (224)
|+....++.......+++||+| |.++...+.++....+.++..+-.+
T Consensus 148 ~i~~~lki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vL~IE~~ 199 (220)
T 3s5u_A 148 KVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQR 199 (220)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESGGGGCCHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 6666677777788899999998 6778888888887777777776665
No 245
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=31.60 E-value=30 Score=29.49 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=53.7
Q ss_pred HHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC
Q psy1621 78 FDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQ 157 (224)
Q Consensus 78 ~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvdi~ 157 (224)
.+.|.+.++. .+.++++.+.|...++.+.+.|...++.+...... ..+..| .+.++...+..|+-+|
T Consensus 371 ~~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~----------~~~~~g--~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASDR--GRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG----------GGCCTT--CEEEEESCCCSCEEET
T ss_pred HHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch----------hhcCCC--cEEEEEcccccCcccC
Confidence 3455555543 24689999999999999999999988775544321 112333 4667777899999999
Q ss_pred CCCEEEEeC
Q psy1621 158 QVSLVINYD 166 (224)
Q Consensus 158 ~~~~vi~~~ 166 (224)
+...++..+
T Consensus 438 ~~klaVITE 446 (483)
T 3hjh_A 438 VRNLALICE 446 (483)
T ss_dssp TTTEEEEEH
T ss_pred CCCEEEEEc
Confidence 888877644
No 246
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=31.36 E-value=72 Score=24.56 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+...++.+.+.|++.|+.+. ++-.++.++-.+.+++|.+.
T Consensus 42 ~~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 42 TNVDCENLTRVLKQLDFEVT-VYKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp -CCHHHHHHHHHHHTTCEEE-EEEECSHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 34678889999999999864 56678888888888888754
No 247
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=31.26 E-value=34 Score=27.97 Aligned_cols=37 Identities=8% Similarity=0.045 Sum_probs=30.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCCH
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMDQ 126 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~~ 126 (224)
..++++||.+-.++...+..|...|+ ++..+.|++..
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 283 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSE 283 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHH
Confidence 56899999998888888888988998 48888998753
No 248
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=30.97 E-value=1.6e+02 Score=21.85 Aligned_cols=115 Identities=11% Similarity=0.083 Sum_probs=59.7
Q ss_pred hhhhhhccCcc-cceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCch----HHHHHHHHHHHhCCCeEE--EecCC
Q psy1621 51 RRRVLIVGDSM-TRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTR----RKVDWLTESMLKKEFTVS--AMHGD 123 (224)
Q Consensus 51 ~~~~~i~~~~~-~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~----~~~~~l~~~L~~~~~~~~--~~~g~ 123 (224)
..|++..+... ......++..+... -...+.+.+.+....++.++.... ...+-+.+.+.+.+.... .+.+.
T Consensus 79 ~iPvV~~~~~~~~~~~~~~V~~D~~~-~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~ 157 (280)
T 3gyb_A 79 LPPFVIAGTRITQASTHDSVANDDFR-GAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYLGP 157 (280)
T ss_dssp CCCEEEESCCCSSSCSTTEEEECHHH-HHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCSC
T ss_pred CCCEEEECCCCCCCCCCCEEEechHH-HHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCcccccCC
Confidence 45555544433 22222334444333 334444555444444554444432 233445556666665433 35566
Q ss_pred CCHHHHHHHHHHh-hc-CCceEEEEcC----------CcccCCCCCCCCEEEEeC
Q psy1621 124 MDQNARDVIMRQF-RS-GSSRVLITTD----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 124 ~~~~~r~~~~~~f-~~-~~~~ilv~t~----------~~~~Gvdi~~~~~vi~~~ 166 (224)
.+.+.-.+..+++ +. .+...++|++ +-..|+.+|+--.|+-+|
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 158 AVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 6666655555554 33 3567777765 346789988755666666
No 249
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=30.44 E-value=1.1e+02 Score=19.63 Aligned_cols=66 Identities=5% Similarity=0.105 Sum_probs=32.8
Q ss_pred EecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHh-------CCCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 70 YIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLK-------KEFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 70 ~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~-------~~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
.++....-...+...+........+..+.+...+. +.+.+ ..+.+..+.-.++...-...++.+++
T Consensus 7 ivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~---~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 79 (140)
T 1k68_A 7 LVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAM---AYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKS 79 (140)
T ss_dssp EECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHH---HHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHH---HHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHc
Confidence 34444434556666666543222444555544333 34444 45667776665554334445555543
No 250
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=30.06 E-value=1.2e+02 Score=19.81 Aligned_cols=66 Identities=12% Similarity=0.205 Sum_probs=31.8
Q ss_pred EecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHh----------CCCeEEEecCCCCHHHHHHHHHHhhc
Q psy1621 70 YIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLK----------KEFTVSAMHGDMDQNARDVIMRQFRS 138 (224)
Q Consensus 70 ~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~----------~~~~~~~~~g~~~~~~r~~~~~~f~~ 138 (224)
.++....-...+...+........+..+.+..++. +.+.+ ..+.+.++.-.++.......++.+++
T Consensus 11 ivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al---~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 86 (149)
T 1k66_A 11 VVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQAL---DFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQ 86 (149)
T ss_dssp EECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHH---HHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTT
T ss_pred EEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHH---HHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHh
Confidence 34443334555566665543221344454544333 33333 45566666655554444455555554
No 251
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=29.91 E-value=1.2e+02 Score=20.04 Aligned_cols=112 Identities=9% Similarity=-0.055 Sum_probs=59.9
Q ss_pred EEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc--CCceE
Q psy1621 66 QFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS--GSSRV 143 (224)
Q Consensus 66 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~--~~~~i 143 (224)
..+..++....-...+..++.......++..+.+..++.. .+.+..+.+..+.-.++...-...++.+++ ....|
T Consensus 16 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~---~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~i 92 (152)
T 3eul_A 16 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALE---LIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRV 92 (152)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHH---HHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEE
T ss_pred EEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHH---HHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeE
Confidence 3455566555456667777766443344445666655543 444456777777766554444555555553 34456
Q ss_pred EEEcCCccc-----CCCCCCCCEEEEeCCCCChhHHHHHHhhccC
Q psy1621 144 LITTDLLAR-----GIDVQQVSLVINYDLPSNRENYIHRIGRGGR 183 (224)
Q Consensus 144 lv~t~~~~~-----Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R 183 (224)
++.|..... .+.. ++..+ +..|.+...+.+++-++.+
T Consensus 93 i~~s~~~~~~~~~~~~~~-g~~~~--l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 93 LLISAHDEPAIVYQALQQ-GAAGF--LLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp EEEESCCCHHHHHHHHHT-TCSEE--EETTCCHHHHHHHHHHHHH
T ss_pred EEEEccCCHHHHHHHHHc-CCCEE--EecCCCHHHHHHHHHHHHc
Confidence 665543211 1111 12222 2357777777777766544
No 252
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=29.77 E-value=1e+02 Score=18.96 Aligned_cols=108 Identities=9% Similarity=0.062 Sum_probs=52.0
Q ss_pred EecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc----CCceEEE
Q psy1621 70 YIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS----GSSRVLI 145 (224)
Q Consensus 70 ~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~----~~~~ilv 145 (224)
.++........+...+.... .. +..+.+.+.+. +.+.+..+.+..+.-.++.......++.+++ ....+++
T Consensus 6 iv~~~~~~~~~l~~~l~~~g-~~-v~~~~~~~~~~---~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~ 80 (119)
T 2j48_A 6 LLEEEDEAATVVCEMLTAAG-FK-VIWLVDGSTAL---DQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVL 80 (119)
T ss_dssp EECCCHHHHHHHHHHHHHTT-CE-EEEESCHHHHH---HHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEE
T ss_pred EEeCCHHHHHHHHHHHHhCC-cE-EEEecCHHHHH---HHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEE
Confidence 34444435556666666532 33 34555544443 3344445677777665544334445555543 2345555
Q ss_pred EcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccC
Q psy1621 146 TTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGR 183 (224)
Q Consensus 146 ~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R 183 (224)
.|+..... ..-.....-.+..|.+...+.+++.++.+
T Consensus 81 ~~~~~~~~-~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 81 FLGEPPVD-PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EESSCCSS-HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred EeCCCCch-hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 55432221 11000111123457777777777766543
No 253
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=29.76 E-value=1.1e+02 Score=22.09 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCC
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGS 140 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~ 140 (224)
|...++.+.+.|.++|+.+. +|-.++.++-.+.++.|.+..
T Consensus 67 t~~D~~~L~~~F~~LgF~V~-v~~dlt~~em~~~l~~~s~~d 107 (173)
T 2ql9_A 67 TDKDAEALFKCFRSLGFDVI-VYNDCSCAKMQDLLKKASEED 107 (173)
T ss_dssp HHHHHHHHHHHHHHHTEEEE-EEESCCHHHHHHHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHhh
Confidence 45678999999999999974 556788888888899887553
No 254
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=29.20 E-value=73 Score=25.96 Aligned_cols=37 Identities=5% Similarity=-0.097 Sum_probs=27.1
Q ss_pred CCCcEEEEe-CchHH-HHHHHHHHHhCCCeEEEecCCCC
Q psy1621 89 SITQAVIFC-NTRRK-VDWLTESMLKKEFTVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~-~t~~~-~~~l~~~L~~~~~~~~~~~g~~~ 125 (224)
+..+++||| .+-.. +..++..|+..|+++..+.||+.
T Consensus 94 ~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 94 GELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp SSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 457899999 44323 34677788888889999999963
No 255
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=29.12 E-value=2e+02 Score=22.30 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=49.5
Q ss_pred HHHHHHhccCCCCcEEEEeCc------hHHHHHHHHHHHhCCCeEEEec-CCCCHHHHHHHHHHh-hcCCceEEEEcC--
Q psy1621 79 DTLCDLYGTLSITQAVIFCNT------RRKVDWLTESMLKKEFTVSAMH-GDMDQNARDVIMRQF-RSGSSRVLITTD-- 148 (224)
Q Consensus 79 ~~l~~ll~~~~~~~~iIf~~t------~~~~~~l~~~L~~~~~~~~~~~-g~~~~~~r~~~~~~f-~~~~~~ilv~t~-- 148 (224)
..+.+.+.+....++.++... ....+-+.+.|.+.+.. ..+. +..+.+.-....+++ ..+....++|.+
T Consensus 163 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~nd~ 241 (333)
T 3jvd_A 163 FQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAE-VTFHFGHYSVESGEEMAQVVFNNGLPDALIVASPR 241 (333)
T ss_dssp HHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE-EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCHH
T ss_pred HHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC-EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECCHH
Confidence 344455554444444444322 22344455667777877 4555 777766655555554 443466666655
Q ss_pred --------CcccCCCCCCCCEEEEeC
Q psy1621 149 --------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 149 --------~~~~Gvdi~~~~~vi~~~ 166 (224)
+-..|+.+|+--.|+-||
T Consensus 242 ~A~g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 242 LMAGVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 356799998755566555
No 256
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=28.87 E-value=80 Score=26.40 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=33.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 88 LSITQAVIFCNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 88 ~~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
....++||.|++ .-+..+.+.+.+. +..+..+||+... ...+...|+|+|.
T Consensus 84 ~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~~v~~~~g~~~~---------~~~~~~~ivi~t~ 136 (500)
T 1z63_A 84 NELTPSLVICPL-SVLKNWEEELSKFAPHLRFAVFHEDRSK---------IKLEDYDIILTTY 136 (500)
T ss_dssp TCCSSEEEEECS-TTHHHHHHHHHHHCTTSCEEECSSSTTS---------CCGGGSSEEEEEH
T ss_pred CCCCCEEEEccH-HHHHHHHHHHHHHCCCceEEEEecCchh---------ccccCCcEEEeeH
Confidence 345789999995 4667777777665 4578888887532 1123446777775
No 257
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=28.75 E-value=1.2e+02 Score=23.47 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 100 RRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 100 ~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
...++.+.+.|++.|+.+. ++-.++.++-.+.+++|.+.
T Consensus 45 ~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 83 (277)
T 1nw9_B 45 NIDCEKLRRRFSSLHFMVE-VKGDLTAKKMVLALLELARQ 83 (277)
T ss_dssp HHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCEEE-EEcCCCHHHHHHHHHHHHHh
Confidence 4689999999999999974 56788999999999999754
No 258
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=28.75 E-value=82 Score=22.06 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=51.3
Q ss_pred HHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q psy1621 77 KFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGI 154 (224)
Q Consensus 77 k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gv 154 (224)
+.....+++... .+.+++|.|.+.++++.+-+.|-........-|+-.... ......|+++++...
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~L~~~~~~--- 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEG---------PRGGAPVEIAWPQKR--- 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCS---------STTCCSEEEECTTSC---
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCC---------CCCCCCEEEeCCCCC---
Confidence 555566666443 578999999999999999999987755555555421110 012346888875421
Q ss_pred CCCCCCEEEEeCCCC
Q psy1621 155 DVQQVSLVINYDLPS 169 (224)
Q Consensus 155 di~~~~~vi~~~~p~ 169 (224)
.-+..+++|+.+.-.
T Consensus 92 ~~~~~~vLinL~~~~ 106 (150)
T 3sxu_A 92 SSSRRDILISLRTSF 106 (150)
T ss_dssp CCSCCSEEEECCSSC
T ss_pred CCCcCCEEEECCCCC
Confidence 112456788877543
No 259
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=28.70 E-value=69 Score=24.89 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=27.2
Q ss_pred CCCcEEEEeCc--hH-HHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNT--RR-KVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t--~~-~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..++||||.+ -. .+..++..|+..|+ ++..+.||+
T Consensus 91 ~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 130 (296)
T 1rhs_A 91 NDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGF 130 (296)
T ss_dssp TTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCH
Confidence 45689999987 33 36678888888888 588888875
No 260
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=28.32 E-value=1.4e+02 Score=23.20 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+...++.+.+.|++.|+.+ .++-.++.++-.+.+++|.+.
T Consensus 67 t~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 67 TDVDAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhh
Confidence 4568999999999999996 467778999999999999764
No 261
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=28.29 E-value=81 Score=27.03 Aligned_cols=36 Identities=8% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~ 124 (224)
+..++++||.+-..+...+..|+..|+ ++..+.||+
T Consensus 62 ~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~ 98 (539)
T 1yt8_A 62 RDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGL 98 (539)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCH
Confidence 457899999987788899999999998 588888865
No 262
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=28.10 E-value=57 Score=22.50 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=32.3
Q ss_pred CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 98 NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 98 ~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
.|.-++..+.+. .|+.+..+...- .+-+..+.+..++|++..+|-|..
T Consensus 36 AT~gTa~~L~e~---~Gl~v~~v~k~~-~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 36 ATGTTGRRIEEA---TGLTVEKLLSGP-LGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp ECHHHHHHHHHH---HCCCCEECSCGG-GTHHHHHHHHHHTTCEEEEEEECC
T ss_pred EccHHHHHHHHh---hCceEEEEEecC-CCCcchHHHHHHCCCccEEEEccC
Confidence 455555444331 588887776432 134678999999999998887764
No 263
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=28.08 E-value=1.8e+02 Score=21.85 Aligned_cols=88 Identities=9% Similarity=0.132 Sum_probs=43.3
Q ss_pred HHHHHHhccCCCCcEEEEeCc------hHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHH---hhcC-CceEEEEcC
Q psy1621 79 DTLCDLYGTLSITQAVIFCNT------RRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQ---FRSG-SSRVLITTD 148 (224)
Q Consensus 79 ~~l~~ll~~~~~~~~iIf~~t------~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~---f~~~-~~~ilv~t~ 148 (224)
..+.+.+.+....++.++... ....+-+.+.|.+.++.+..+.+..+.+.-....+. +..+ +...++|.+
T Consensus 113 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 192 (285)
T 3c3k_A 113 EYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLLKSAVKPDAIFAIS 192 (285)
T ss_dssp HHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEECSSSSHHHHHHHHHHHHSSSSCCSEEEESS
T ss_pred HHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCceEeecCCChHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 334444444444444444332 122333445566666543334454444333344444 4433 566777765
Q ss_pred ----------CcccCCCCCCCCEEEEeC
Q psy1621 149 ----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 149 ----------~~~~Gvdi~~~~~vi~~~ 166 (224)
+-..|+.+|+--.|+-+|
T Consensus 193 d~~A~g~~~al~~~g~~vP~di~vvg~d 220 (285)
T 3c3k_A 193 DVLAAGAIQALTESGLSIPQDVAVVGFD 220 (285)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 235788888654555454
No 264
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=27.98 E-value=74 Score=21.94 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=27.0
Q ss_pred HHHHhCCCeEEEecCCCCHHHH----HHHHHHhhcCCceEEEEcCC
Q psy1621 108 ESMLKKEFTVSAMHGDMDQNAR----DVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 108 ~~L~~~~~~~~~~~g~~~~~~r----~~~~~~f~~~~~~ilv~t~~ 149 (224)
++|++.|+.+..+..... ..+ ..+.+.+++|++..+|-|+.
T Consensus 61 ~~L~~~Gi~v~~v~k~~e-gg~~~~~~~i~d~i~~g~i~lVInt~~ 105 (143)
T 2yvq_A 61 DWLNANNVPATPVAWPSQ-EGQNPSLSSIRKLIRDGSIDLVINLPN 105 (143)
T ss_dssp HHHHHTTCCCEEECCGGG-C-----CBCHHHHHHTTSCCEEEECCC
T ss_pred HHHHHcCCeEEEEEeccC-CCcccccccHHHHHHCCCceEEEECCC
Confidence 456677887777663211 002 45888899999988887764
No 265
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=27.78 E-value=1.3e+02 Score=22.80 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=36.5
Q ss_pred HHHHHHHHhccCCCCcEEEEeC-----chHHHHHHHHHHHhCCCeEEEecCC
Q psy1621 77 KFDTLCDLYGTLSITQAVIFCN-----TRRKVDWLTESMLKKEFTVSAMHGD 123 (224)
Q Consensus 77 k~~~l~~ll~~~~~~~~iIf~~-----t~~~~~~l~~~L~~~~~~~~~~~g~ 123 (224)
|+....++..+....+++||+| |.++...+.+.....+.++..+-.+
T Consensus 148 ki~~~lki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vLlIE~~ 199 (229)
T 3qhq_A 148 KCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPR 199 (229)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESCGGGCCHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 6666677777888899999998 6778888888887777777666655
No 266
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=27.73 E-value=43 Score=28.11 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-eEEEecCCCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEF-TVSAMHGDMD 125 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~~g~~~ 125 (224)
+..+++++|.+-.++...+..|+..|+ ++..+.|++.
T Consensus 426 ~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 456899999999999999999999888 4888989853
No 267
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=27.62 E-value=1.3e+02 Score=19.53 Aligned_cols=114 Identities=9% Similarity=-0.007 Sum_probs=62.2
Q ss_pred EEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHh-----CCCeEEEecCCCCHHHHHHHHHHhhc---
Q psy1621 67 FYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLK-----KEFTVSAMHGDMDQNARDVIMRQFRS--- 138 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~-----~~~~~~~~~g~~~~~~r~~~~~~f~~--- 138 (224)
.+..++....-...+..++........+..+.+..++. +.+.+ ..+.+.++.-.++.......++.+++
T Consensus 11 ~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~---~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 11 SVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAI---NKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHH---HHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHH---HHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 34455554445566667776644322455565655544 33444 56677777766655444455555544
Q ss_pred ---CCceEEEEcCCccc-----CCCCCCCCEEEEeCCCCChhHHHHHHhhccCCC
Q psy1621 139 ---GSSRVLITTDLLAR-----GIDVQQVSLVINYDLPSNRENYIHRIGRGGRFG 185 (224)
Q Consensus 139 ---~~~~ilv~t~~~~~-----Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g 185 (224)
....|++.|..... .+...++.. .+.-|.+...+.+++.++...+
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~--~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDY--YVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCE--EECSSCCHHHHHHHHHHHHCC-
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcce--eeeCCCCHHHHHHHHHHHHHhc
Confidence 45566666653211 111111222 2446888888888888776643
No 268
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=27.28 E-value=2e+02 Score=21.55 Aligned_cols=89 Identities=4% Similarity=0.068 Sum_probs=46.2
Q ss_pred HHHHHHhccCCCCcEEEEeCc------hHHHHHHHHHHHhCCCeEE---Ee--cCCC----CHHHHHHHHHHhhcCCceE
Q psy1621 79 DTLCDLYGTLSITQAVIFCNT------RRKVDWLTESMLKKEFTVS---AM--HGDM----DQNARDVIMRQFRSGSSRV 143 (224)
Q Consensus 79 ~~l~~ll~~~~~~~~iIf~~t------~~~~~~l~~~L~~~~~~~~---~~--~g~~----~~~~r~~~~~~f~~~~~~i 143 (224)
..+.+.+.+....++.++... ....+-+.+.+++.++.+. .+ .+.. +.+......+.+.+.....
T Consensus 111 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a 190 (288)
T 2qu7_A 111 YIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKG 190 (288)
T ss_dssp HHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCE
Confidence 344455544444454444422 2233445556667766432 33 5555 4444344444433326677
Q ss_pred EEEcC----------CcccCCCCCCCCEEEEeCC
Q psy1621 144 LITTD----------LLARGIDVQQVSLVINYDL 167 (224)
Q Consensus 144 lv~t~----------~~~~Gvdi~~~~~vi~~~~ 167 (224)
++|++ +-..|+.+|+--.|+-+|.
T Consensus 191 i~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 224 (288)
T 2qu7_A 191 IVATNHLLLLGALQAIKESEKEIKKDVIIVGFDD 224 (288)
T ss_dssp EEECSHHHHHHHHHHHHHSSCCBTTTBEEEEESC
T ss_pred EEECCcHHHHHHHHHHHHhCCCCCCceEEEEeCC
Confidence 77765 2467888886555666654
No 269
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=27.00 E-value=1.4e+02 Score=24.08 Aligned_cols=62 Identities=10% Similarity=0.164 Sum_probs=40.6
Q ss_pred HHHHhccC-CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCCHHHHHHHHHHhhcCCce
Q psy1621 81 LCDLYGTL-SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMDQNARDVIMRQFRSGSSR 142 (224)
Q Consensus 81 l~~ll~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~~~~r~~~~~~f~~~~~~ 142 (224)
+.++.... ..+-++||++-....+.+.+.+.+.+++ +..+.++.+.++..++.+.-++...+
T Consensus 70 v~ea~~~~p~~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~r 133 (334)
T 3mwd_B 70 MADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVT 133 (334)
T ss_dssp HHHHHHHCTTCCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHHhhcCCCCcEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 33444333 2467888888877777778888767775 55558899887666666655544443
No 270
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=26.96 E-value=1.4e+02 Score=19.74 Aligned_cols=107 Identities=8% Similarity=-0.051 Sum_probs=55.8
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHh-CCCeEEEecCCCCHHHHHHHHHHhhc--CCceEE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLK-KEFTVSAMHGDMDQNARDVIMRQFRS--GSSRVL 144 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~-~~~~~~~~~g~~~~~~r~~~~~~f~~--~~~~il 144 (224)
+..++....-...+..++....+...+..+.+...+. +.+.+ ..+.+.++.-.++...-...++.++. ....|+
T Consensus 6 iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~---~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 82 (154)
T 2qsj_A 6 VLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDAL---AFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVA 82 (154)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHH---HHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEE
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHH---HHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEE
Confidence 3444544445566667776643333455555555443 44555 56778887776665554555555543 345666
Q ss_pred EEcCCc---------ccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCC
Q psy1621 145 ITTDLL---------ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRF 184 (224)
Q Consensus 145 v~t~~~---------~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~ 184 (224)
+.|... ..|++ . .+..|.+...+.+++.++.+.
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~-----~--~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 83 LISGETDHELIRAALEAGAD-----G--FIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EC-----CHHHHHHHHTTCC-----B--BCCTTSCHHHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHccCC-----E--EEeCCCCHHHHHHHHHHHHcC
Confidence 665432 22322 1 245688888888888877654
No 271
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=26.75 E-value=1.1e+02 Score=26.26 Aligned_cols=71 Identities=8% Similarity=-0.025 Sum_probs=36.5
Q ss_pred EEEEecCCccHHHHHHHHh----ccC-------CCCcEEEEeCchHHHHHHH-HHHHhCCCeEEEecCCCCHHHHHHHHH
Q psy1621 67 FYIYIEREDWKFDTLCDLY----GTL-------SITQAVIFCNTRRKVDWLT-ESMLKKEFTVSAMHGDMDQNARDVIMR 134 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll----~~~-------~~~~~iIf~~t~~~~~~l~-~~L~~~~~~~~~~~g~~~~~~r~~~~~ 134 (224)
.....+....|-.....++ ... ...++||.+++++-++.+. +.+...+..+..++++.
T Consensus 201 ~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~---------- 270 (590)
T 3h1t_A 201 SLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGK---------- 270 (590)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTTTCSSEEECCC------------
T ss_pred eEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhcchhhhhhhccC----------
Confidence 3444555555765544333 322 4578999999999888888 77766666666666432
Q ss_pred HhhcCCceEEEEcCC
Q psy1621 135 QFRSGSSRVLITTDL 149 (224)
Q Consensus 135 ~f~~~~~~ilv~t~~ 149 (224)
..+...|+|+|.-
T Consensus 271 --~~~~~~I~v~T~~ 283 (590)
T 3h1t_A 271 --VVKSREIYFAIYQ 283 (590)
T ss_dssp --CCSSCSEEEEEGG
T ss_pred --CCCCCcEEEEEhh
Confidence 2345678888864
No 272
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=25.98 E-value=65 Score=23.85 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=41.8
Q ss_pred HHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHH----HHHHHHHHhhcCCceEEEEcCCc
Q psy1621 81 LCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQN----ARDVIMRQFRSGSSRVLITTDLL 150 (224)
Q Consensus 81 l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~----~r~~~~~~f~~~~~~ilv~t~~~ 150 (224)
..+-.++..-..++|...+-+++..+++.+....+-+..+|.+.... --.+..+.+.+...+|+.+|-++
T Consensus 35 a~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~tH~l 108 (201)
T 1vp8_A 35 AVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSHIL 108 (201)
T ss_dssp HHHHHHHHTCCEEEEECSSSHHHHHHHHHCTTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECCCTT
T ss_pred HHHHHHHcCCCEEEEEeCCChHHHHHHHHhcCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEEeccc
Confidence 33444444667888888889999888887722223334455433210 01234455666678888888764
No 273
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=25.24 E-value=1.8e+02 Score=20.44 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=28.1
Q ss_pred HHHHh-CCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy1621 108 ESMLK-KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDL 149 (224)
Q Consensus 108 ~~L~~-~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~ 149 (224)
+.|.+ .|+.+..+...- ..-+..+.+..++|++..+|-|..
T Consensus 50 ~~L~e~~Gl~v~~v~k~~-eGG~p~I~d~I~~geIdlVInt~~ 91 (152)
T 1b93_A 50 NLISRATGMNVNAMLSGP-MGGDQQVGALISEGKIDVLIFFWD 91 (152)
T ss_dssp HHHHHHHCCCCEEECCGG-GTHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHhCceeEEEEecC-CCCCchHHHHHHCCCccEEEEcCC
Confidence 34444 688887776432 113568999999999987776653
No 274
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=25.17 E-value=2.2e+02 Score=21.48 Aligned_cols=62 Identities=11% Similarity=0.121 Sum_probs=43.6
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd 155 (224)
..++|=+.+.+.+....+.+.+.+..+..-+.+.++++. ..++.+.+ +..++++.+ ++.|+|
T Consensus 54 ~DVvIDFT~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~-~~l~~~a~-~~~vv~apN-fSlGvn 115 (228)
T 1vm6_A 54 PDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHL-QMLRELSK-EVPVVQAYN-FSIGIN 115 (228)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHHTCEEEECCCSCCHHHH-HHHHHHTT-TSEEEECSC-CCHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHH-HHHHHHHh-hCCEEEecc-ccHHHH
Confidence 458885667778888888888889998888888888765 44555543 377777765 334443
No 275
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.15 E-value=2.1e+02 Score=21.29 Aligned_cols=116 Identities=11% Similarity=0.224 Sum_probs=59.2
Q ss_pred hhhhhhccCccccee-EEEEEecCCccHHHHHHHHhccCCCCcEEEEeCc------hHHHHHHHHHHHhCCCeE---EEe
Q psy1621 51 RRRVLIVGDSMTRIR-QFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNT------RRKVDWLTESMLKKEFTV---SAM 120 (224)
Q Consensus 51 ~~~~~i~~~~~~~i~-~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t------~~~~~~l~~~L~~~~~~~---~~~ 120 (224)
..|++..+....... ..++..+... -...+.+.+.+....++.++... ....+-+.+.|.+.+..+ ...
T Consensus 92 ~iPvV~~~~~~~~~~~~~~V~~D~~~-~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~ 170 (292)
T 3k4h_A 92 NFPFVLIGKPYDRKDEITYVDNDNYT-AAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYIL 170 (292)
T ss_dssp TCCEEEESCCSSCTTTSCEEECCHHH-HHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEE
T ss_pred CCCEEEECCCCCCCCCCCEEEECcHH-HHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEE
Confidence 345554443332221 2233344332 33344444444444455444432 223444556677766542 234
Q ss_pred cCCCCHHHHHHHHHHh-hcC-CceEEEEcC----------CcccCCCCCCCCEEEEeCC
Q psy1621 121 HGDMDQNARDVIMRQF-RSG-SSRVLITTD----------LLARGIDVQQVSLVINYDL 167 (224)
Q Consensus 121 ~g~~~~~~r~~~~~~f-~~~-~~~ilv~t~----------~~~~Gvdi~~~~~vi~~~~ 167 (224)
.+..+.+.-.+..+++ ..+ +...++|++ +-..|+.+|+--.|+-+|-
T Consensus 171 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d~ 229 (292)
T 3k4h_A 171 HFDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNN 229 (292)
T ss_dssp ECCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred ecCCCHHHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHHHHHhCCCCCCeEEEEEecC
Confidence 5666666655555554 333 566777765 3567899987556666663
No 276
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=25.14 E-value=2.2e+02 Score=21.39 Aligned_cols=88 Identities=9% Similarity=0.168 Sum_probs=47.2
Q ss_pred HHHHHHhccCCCCcEEEEeCch-------HHHHHHHHHHHhCCCeEE---EecCCCCHHHHHHHHHHhh-c-CCceEEEE
Q psy1621 79 DTLCDLYGTLSITQAVIFCNTR-------RKVDWLTESMLKKEFTVS---AMHGDMDQNARDVIMRQFR-S-GSSRVLIT 146 (224)
Q Consensus 79 ~~l~~ll~~~~~~~~iIf~~t~-------~~~~~l~~~L~~~~~~~~---~~~g~~~~~~r~~~~~~f~-~-~~~~ilv~ 146 (224)
..+.+.+.+....++.++.... ...+-+.+.|.+.++.+. .+.+..+.+.-....+++- . .+...++|
T Consensus 122 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 201 (289)
T 2fep_A 122 YDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILS 201 (289)
T ss_dssp HHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEE
T ss_pred HHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3344444444444554444332 223445556777765432 3456666665555555543 3 35667777
Q ss_pred cC----------CcccCCCCCCCCEEEEeC
Q psy1621 147 TD----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 147 t~----------~~~~Gvdi~~~~~vi~~~ 166 (224)
++ +-..|+.+|+--.|+-+|
T Consensus 202 ~~d~~A~g~~~al~~~G~~vP~di~vvg~D 231 (289)
T 2fep_A 202 ATDEMALGIIHAAQDQGLSIPEDLDIIGFD 231 (289)
T ss_dssp SSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 65 245788888644555554
No 277
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=24.69 E-value=1.8e+02 Score=22.68 Aligned_cols=53 Identities=6% Similarity=0.016 Sum_probs=35.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCCHHHHHHHHHHhhcCCce
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMDQNARDVIMRQFRSGSSR 142 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~~~~r~~~~~~f~~~~~~ 142 (224)
..+-++||++.... ..+.+.+.+.+.+ +..+..+.+.++..++.+.-++...+
T Consensus 70 ~~Dv~ii~vp~~~~-~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~ 123 (294)
T 2yv1_A 70 DANASVIFVPAPFA-KDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK 123 (294)
T ss_dssp CCCEEEECCCHHHH-HHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEccCHHHH-HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 34567778776654 4555555667887 66678899887777777666554443
No 278
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=24.49 E-value=1.3e+02 Score=27.11 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=37.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHh--------hcCCceEEEEcCC
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKK--EFTVSAMHGDMDQNARDVIMRQF--------RSGSSRVLITTDL 149 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f--------~~~~~~ilv~t~~ 149 (224)
..+++||.|+ ...+..+.+.+.+. +..+..+||.............+ ..++..|+|+|..
T Consensus 285 ~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~ 354 (800)
T 3mwy_W 285 QNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYE 354 (800)
T ss_dssp CCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTT
T ss_pred CCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHH
Confidence 4678999998 55566666666654 56888888876543333222222 2345568998863
No 279
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=24.45 E-value=1.4e+02 Score=18.81 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=33.2
Q ss_pred CCcEEEEe-CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHH
Q psy1621 90 ITQAVIFC-NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQ 135 (224)
Q Consensus 90 ~~~~iIf~-~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~ 135 (224)
..+++||. +....|..+...|.+.++....+.=...++.+....+.
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~ 61 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAAR 61 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHH
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHH
Confidence 45777776 56888999999999888887777766666655544433
No 280
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=24.30 E-value=46 Score=23.15 Aligned_cols=36 Identities=8% Similarity=0.259 Sum_probs=25.0
Q ss_pred CCcE--EEEeC-chHHHHHHHHHHHh----------CCC-eEEEecCCCC
Q psy1621 90 ITQA--VIFCN-TRRKVDWLTESMLK----------KEF-TVSAMHGDMD 125 (224)
Q Consensus 90 ~~~~--iIf~~-t~~~~~~l~~~L~~----------~~~-~~~~~~g~~~ 125 (224)
..++ +++|. +-..+...+..|.+ .|+ ++..+.||+.
T Consensus 87 ~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 87 GKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred CCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 3454 45687 76677777787765 376 6889999964
No 281
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=24.11 E-value=3e+02 Score=24.06 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=33.6
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC---CCeEEEecCCCCHHHHHHHHHHhhcC-----CceEEEEcC
Q psy1621 91 TQAVIFCNTRRKVDWLTESMLKK---EFTVSAMHGDMDQNARDVIMRQFRSG-----SSRVLITTD 148 (224)
Q Consensus 91 ~~~iIf~~t~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~r~~~~~~f~~~-----~~~ilv~t~ 148 (224)
.++||.|++ ..+..+.+.+.+. ...+..++++. ..++...+..|... ...|+|+|.
T Consensus 115 ~~~LiV~P~-sll~qW~~E~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~vvi~ty 178 (644)
T 1z3i_X 115 DKVIVVSPS-SLVRNWYNEVGKWLGGRVQPVAIDGGS-KDEIDSKLVNFISQQGMRIPTPILIISY 178 (644)
T ss_dssp SCEEEEECH-HHHHHHHHHHHHHHGGGCCEEEECSSC-HHHHHHHHHHHHCCCSSCCSCCEEEEEH
T ss_pred CcEEEEecH-HHHHHHHHHHHHHcCCCeeEEEEeCCC-HHHHHHHHHHHHHhcCCCCCCcEEEeeH
Confidence 468999986 5555555555543 35566677664 44444455555432 356888885
No 282
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=24.08 E-value=2.1e+02 Score=22.00 Aligned_cols=63 Identities=13% Similarity=0.254 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCeEE---EecCCCCHHHHHHHHHHh-hcC-CceEEEEcC----------CcccCCCCCCCCEEEEeC
Q psy1621 104 DWLTESMLKKEFTVS---AMHGDMDQNARDVIMRQF-RSG-SSRVLITTD----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 104 ~~l~~~L~~~~~~~~---~~~g~~~~~~r~~~~~~f-~~~-~~~ilv~t~----------~~~~Gvdi~~~~~vi~~~ 166 (224)
+-+.+.|.+.++.+. .+.+..+.+.-....+.+ ..+ +...++|.+ +-..|+.+|+--.|+-||
T Consensus 198 ~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvvg~D 275 (332)
T 2hsg_A 198 KGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFD 275 (332)
T ss_dssp HHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCCHHHHCEEEEES
T ss_pred HHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 345556666665432 345666665555555554 333 566677765 245788877533455554
No 283
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=23.71 E-value=1.5e+02 Score=19.11 Aligned_cols=110 Identities=11% Similarity=0.098 Sum_probs=62.1
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHh-CCCeEEEecCCCC-HHHHHHHHHHhhc----CCc
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLK-KEFTVSAMHGDMD-QNARDVIMRQFRS----GSS 141 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~-~~~~~~~~~g~~~-~~~r~~~~~~f~~----~~~ 141 (224)
+..++....-...+..++....+..+ +.+.+..++ .+.+.+ ..+.+..+.-.++ ...-...++.+++ ...
T Consensus 7 ilivdd~~~~~~~l~~~L~~~~~~~v-~~~~~~~~a---~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~ 82 (140)
T 3lua_A 7 VLLIDYFEYEREKTKIIFDNIGEYDF-IEVENLKKF---YSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANT 82 (140)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCCCEE-EEECSHHHH---HTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTC
T ss_pred EEEEeCCHHHHHHHHHHHHhccCccE-EEECCHHHH---HHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCC
Confidence 34455544455667777766233344 355554433 344555 6778888888888 7777777777765 345
Q ss_pred eEEEEcCCccc-----CCCCCCCCEEEEeCCCCChhHHHHHHhhccCC
Q psy1621 142 RVLITTDLLAR-----GIDVQQVSLVINYDLPSNRENYIHRIGRGGRF 184 (224)
Q Consensus 142 ~ilv~t~~~~~-----Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~ 184 (224)
.|++.|..... .+.. ++..+ +.-|.+...+.+++.++.+.
T Consensus 83 ~ii~ls~~~~~~~~~~~~~~-g~~~~--l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 83 PVIIATKSDNPGYRHAALKF-KVSDY--ILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHS-CCSEE--EESSCCTTHHHHHHHHHHCC
T ss_pred CEEEEeCCCCHHHHHHHHHc-CCCEE--EECCCCHHHHHHHHHHHHHh
Confidence 56666543211 1111 12222 33577777777777766543
No 284
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=23.69 E-value=2.4e+02 Score=21.41 Aligned_cols=59 Identities=8% Similarity=0.111 Sum_probs=41.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHH-HHHHHHHHhh--cCCceEEEEcC
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQN-ARDVIMRQFR--SGSSRVLITTD 148 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~-~r~~~~~~f~--~~~~~ilv~t~ 148 (224)
+-++++.-.+.+.++...+.+.+.+.++..+..+++.+ +-+..++... -|.+++||..-
T Consensus 33 Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 33 GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 44666666667778888888988888888888887654 3344444433 27889998754
No 285
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=23.64 E-value=2.3e+02 Score=21.16 Aligned_cols=65 Identities=12% Similarity=0.235 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCeEE---EecCCCCHHHHHHHHHHhhc--C--CceEEEEcC----------CcccCCCCCCCCEEEEe
Q psy1621 103 VDWLTESMLKKEFTVS---AMHGDMDQNARDVIMRQFRS--G--SSRVLITTD----------LLARGIDVQQVSLVINY 165 (224)
Q Consensus 103 ~~~l~~~L~~~~~~~~---~~~g~~~~~~r~~~~~~f~~--~--~~~ilv~t~----------~~~~Gvdi~~~~~vi~~ 165 (224)
.+-+.+.+++.++.+. .+.+..+.+.-....+.+-+ . ....++|.+ +-..|+.+|+--.|+-+
T Consensus 144 ~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~vP~di~vig~ 223 (287)
T 3bbl_A 144 LQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLTIGTDLAIIGF 223 (287)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 3445556677765432 34566666655555555533 3 567777765 24678998865556655
Q ss_pred CC
Q psy1621 166 DL 167 (224)
Q Consensus 166 ~~ 167 (224)
|.
T Consensus 224 d~ 225 (287)
T 3bbl_A 224 DD 225 (287)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 286
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=23.45 E-value=1.6e+02 Score=19.36 Aligned_cols=111 Identities=12% Similarity=0.014 Sum_probs=59.8
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc--CCceEEE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS--GSSRVLI 145 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~--~~~~ilv 145 (224)
+..++....-...+..++....+..++..+.+...+. +.+.+..+.+.++.-.++...-...++.+++ ....|++
T Consensus 8 ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~---~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (153)
T 3cz5_A 8 IMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAY---RLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILI 84 (153)
T ss_dssp EEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHH---HHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred EEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHH---HHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEE
Confidence 3445554445566677776534444443566655443 4455666778777765554333444455443 3455666
Q ss_pred EcCCcc-----cCCCCCCCCEEEEeCCCCChhHHHHHHhhccCC
Q psy1621 146 TTDLLA-----RGIDVQQVSLVINYDLPSNRENYIHRIGRGGRF 184 (224)
Q Consensus 146 ~t~~~~-----~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~ 184 (224)
.|.... ..+. .++..+ +..|.+...+.+++.++.+.
T Consensus 85 ls~~~~~~~~~~~~~-~g~~~~--l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 85 FTMHQGSAFALKAFE-AGASGY--VTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp EESCCSHHHHHHHHH-TTCSEE--EETTSCTTHHHHHHHHHTTT
T ss_pred EECCCCHHHHHHHHH-CCCcEE--EecCCCHHHHHHHHHHHHhC
Confidence 554321 1111 122222 34588888888888887664
No 287
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=23.36 E-value=1.2e+02 Score=24.02 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621 99 TRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG 139 (224)
Q Consensus 99 t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 139 (224)
+...++.+++.|++.|+.+. ++-.++.++-.+.+++|.+.
T Consensus 92 ~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 131 (305)
T 1f1j_A 92 TDKDAEALFKCFRSLGFDVI-VYNDCSCAKMQDLLKKASEE 131 (305)
T ss_dssp HHHHHHHHHHHHHHHTEEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 45789999999999999974 56778889988999998754
No 288
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=22.71 E-value=2.4e+02 Score=21.05 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=47.5
Q ss_pred HHHHHHhccCCCCcEEEEeCc------hHHHHHHHHHHHhCCCeEE---EecCCCCHHHHHHHHHHhh-cCCceEEEEcC
Q psy1621 79 DTLCDLYGTLSITQAVIFCNT------RRKVDWLTESMLKKEFTVS---AMHGDMDQNARDVIMRQFR-SGSSRVLITTD 148 (224)
Q Consensus 79 ~~l~~ll~~~~~~~~iIf~~t------~~~~~~l~~~L~~~~~~~~---~~~g~~~~~~r~~~~~~f~-~~~~~ilv~t~ 148 (224)
..+.+.+.+....++.++... ....+-+.+.+.+.++.+. .+.+..+.+.-....+.+- ..+...++|++
T Consensus 114 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~~ 193 (290)
T 3clk_A 114 YQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIAAS 193 (290)
T ss_dssp HHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEESS
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEECC
Confidence 344455544443444443321 2334455566777776532 4456666665555555554 34566677765
Q ss_pred ----------CcccCCCCCCCCEEEEeC
Q psy1621 149 ----------LLARGIDVQQVSLVINYD 166 (224)
Q Consensus 149 ----------~~~~Gvdi~~~~~vi~~~ 166 (224)
+-..|+.+|+--.|+-+|
T Consensus 194 d~~a~g~~~al~~~g~~vP~di~vvg~d 221 (290)
T 3clk_A 194 DMTAIGILNQASSFGIEVPKDLSIVSID 221 (290)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred cHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 346788888644555554
No 289
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=22.56 E-value=2.9e+02 Score=21.84 Aligned_cols=59 Identities=2% Similarity=-0.057 Sum_probs=35.7
Q ss_pred CCcEEEEeCc----hHHHHHHHHHHHhCCCeEEE---------ecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 90 ITQAVIFCNT----RRKVDWLTESMLKKEFTVSA---------MHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 90 ~~~~iIf~~t----~~~~~~l~~~L~~~~~~~~~---------~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
++.+-|++++ .+..+...+.|++.|+.+.. +.++.+.+......+.|...+++.++|+-
T Consensus 17 Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 88 (311)
T 1zl0_A 17 DGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLR 88 (311)
T ss_dssp CSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESC
T ss_pred cCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 3444444443 34456666778888877664 22343344444555568888999888875
No 290
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=22.28 E-value=2.8e+02 Score=21.60 Aligned_cols=52 Identities=8% Similarity=0.064 Sum_probs=34.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCe-EEEecCCCCHHHHHHHHHHhhcCCce
Q psy1621 90 ITQAVIFCNTRRKVDWLTESMLKKEFT-VSAMHGDMDQNARDVIMRQFRSGSSR 142 (224)
Q Consensus 90 ~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~~g~~~~~~r~~~~~~f~~~~~~ 142 (224)
.+-+++|++.... ..+.+.+.+.+.+ +..+..+.+.++..++.+.-++..++
T Consensus 72 ~DvaIi~vp~~~~-~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~ 124 (297)
T 2yv2_A 72 INTSIVFVPAPFA-PDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT 124 (297)
T ss_dssp CCEEEECCCGGGH-HHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred CCEEEEecCHHHH-HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 4667788877554 4555555667887 66678899887766666666554443
No 291
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=21.80 E-value=2.3e+02 Score=21.90 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=34.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCeE-EEecCCCCHHHHHHHHHHhhcCCce
Q psy1621 89 SITQAVIFCNTRRKVDWLTESMLKKEFTV-SAMHGDMDQNARDVIMRQFRSGSSR 142 (224)
Q Consensus 89 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~-~~~~g~~~~~~r~~~~~~f~~~~~~ 142 (224)
..+-++||++.....+.+.+ +.+.+.++ ..+..+.+.++..++.+.-++...+
T Consensus 64 ~~D~viI~tP~~~~~~~~~e-a~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~ 117 (288)
T 2nu8_A 64 GATASVIYVPAPFCKDSILE-AIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVR 117 (288)
T ss_dssp CCCEEEECCCGGGHHHHHHH-HHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEecCHHHHHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 34678888887765555544 45567775 5567788877766666666554443
No 292
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=21.75 E-value=2.3e+02 Score=24.81 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=37.1
Q ss_pred CCccHHHHHHHHhccC--CCCcEEEEeCchHHHHHHHHHHHhCCCeEEEe
Q psy1621 73 REDWKFDTLCDLYGTL--SITQAVIFCNTRRKVDWLTESMLKKEFTVSAM 120 (224)
Q Consensus 73 ~~~~k~~~l~~ll~~~--~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~ 120 (224)
....|-..+..++..+ .+.++||.++|-+.++.+.+.|...+.++..+
T Consensus 214 PGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRl 263 (646)
T 4b3f_X 214 PGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 263 (646)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEe
Confidence 3345877777666544 56799999999999999999998887766554
No 293
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=21.73 E-value=1.7e+02 Score=18.86 Aligned_cols=110 Identities=11% Similarity=-0.022 Sum_probs=59.7
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc----CCceE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS----GSSRV 143 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~----~~~~i 143 (224)
+..++....-...+..++.... .. +..+.+...+ .+.+.+..+.+.++.-.++.......++.+++ ....|
T Consensus 10 iLivdd~~~~~~~l~~~L~~~g-~~-v~~~~~~~~a---~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pi 84 (142)
T 3cg4_A 10 VMIVDDDAHVRIAVKTILSDAG-FH-IISADSGGQC---IDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAI 84 (142)
T ss_dssp EEEECSCHHHHHHHHHHHHHTT-CE-EEEESSHHHH---HHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCC-eE-EEEeCCHHHH---HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCE
Confidence 4445554445667777776643 33 4455555443 34555667788887766654444555666554 34566
Q ss_pred EEEcCCcccCC--CCCCCCEEEEeCCCCChhHHHHHHhhcc
Q psy1621 144 LITTDLLARGI--DVQQVSLVINYDLPSNRENYIHRIGRGG 182 (224)
Q Consensus 144 lv~t~~~~~Gv--di~~~~~vi~~~~p~s~~~~~q~~GR~~ 182 (224)
++.|....... ..-.....-.+..|.+...+.+++.++.
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 85 VMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp EEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 66665432221 1111222223456888888777776553
No 294
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=21.67 E-value=57 Score=30.41 Aligned_cols=74 Identities=8% Similarity=-0.042 Sum_probs=41.1
Q ss_pred CCccHHHHHHHHh----ccCCCCcEEEEeCchHHHHHHHHHH-HhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy1621 73 REDWKFDTLCDLY----GTLSITQAVIFCNTRRKVDWLTESM-LKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITT 147 (224)
Q Consensus 73 ~~~~k~~~l~~ll----~~~~~~~~iIf~~t~~~~~~l~~~L-~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t 147 (224)
....|--....++ ......++||.|++ .-+......+ ...+..+..+||+.....+......| ....|+|+|
T Consensus 179 tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~~~~~~~~~~~~~~~~--~~~dIvI~T 255 (968)
T 3dmq_A 179 VGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPF--DTEQLVICS 255 (968)
T ss_dssp TTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECCHHHHHHHHHTTCSSS--TTCSEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEccchhhhhhhhccccc--ccCCEEEEc
Confidence 3344654333333 23345689999999 6666666666 55688888888753222111110111 245788888
Q ss_pred CC
Q psy1621 148 DL 149 (224)
Q Consensus 148 ~~ 149 (224)
..
T Consensus 256 ~~ 257 (968)
T 3dmq_A 256 LD 257 (968)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 295
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=20.88 E-value=1.8e+02 Score=18.77 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=56.2
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhc----CCceE
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRS----GSSRV 143 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~----~~~~i 143 (224)
+..++....-...+..++... .. +..+.+..++. +.+.+..+.+.++.-.++.......++.+++ ....|
T Consensus 6 iLivdd~~~~~~~l~~~l~~~--~~-v~~~~~~~~a~---~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 6 ILIIDQQDFSRIELKNFLDSE--YL-VIESKNEKEAL---EQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp EEEECSCHHHHHHHHHHHTTT--SE-EEEESSHHHHH---HHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred EEEEeCCHHHHHHHHHHHHhc--ce-EEEeCCHHHHH---HHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 344555444566677777664 33 34455544443 3444556788888877776666666777664 34566
Q ss_pred EEEcCCccc-----CCCCCCCCEEEEeCCCCChhHHHHHHhhccC
Q psy1621 144 LITTDLLAR-----GIDVQQVSLVINYDLPSNRENYIHRIGRGGR 183 (224)
Q Consensus 144 lv~t~~~~~-----Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R 183 (224)
++.|..... .++. ++..+ +.-|.+...+.+++.++.+
T Consensus 80 i~~s~~~~~~~~~~~~~~-g~~~~--l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHS-GADDY--LTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp EEEECC----CTTTTTTC-CCSEE--EESSCCHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhc-CCCee--eeCCCCHHHHHHHHHHHHh
Confidence 666553221 2222 22222 3358888888887766543
No 296
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=20.87 E-value=4e+02 Score=23.65 Aligned_cols=58 Identities=9% Similarity=-0.059 Sum_probs=43.0
Q ss_pred EEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCH
Q psy1621 67 FYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQ 126 (224)
Q Consensus 67 ~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~ 126 (224)
.++..+....|-..+...+... .+.++.++++.-|..+++.+.+.+..+..++|+...
T Consensus 158 vlv~apTGSGKT~~al~~l~~~--~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~ 215 (677)
T 3rc3_A 158 IFHSGPTNSGKTYHAIQKYFSA--KSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV 215 (677)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS--SSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhc--CCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE
Confidence 3444455566776555544432 355888999999999999999999999999998543
No 297
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=20.79 E-value=1.9e+02 Score=19.17 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=33.8
Q ss_pred HHHHHHhccCCCCcEEEEeCc------hHHHHHHHHHHHhCCC-eEEEecCCCCHHHHHHHHHHhh
Q psy1621 79 DTLCDLYGTLSITQAVIFCNT------RRKVDWLTESMLKKEF-TVSAMHGDMDQNARDVIMRQFR 137 (224)
Q Consensus 79 ~~l~~ll~~~~~~~~iIf~~t------~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~r~~~~~~f~ 137 (224)
+.+.++++. .+++||..+ ..-|..+.+.|...+. ....+.-...++.|.. +..+.
T Consensus 11 e~i~~~i~~---~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~-l~~~s 72 (118)
T 2wul_A 11 EQLDALVKK---DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQG-IKDYS 72 (118)
T ss_dssp HHHHHHHHH---SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHH-HHHHH
T ss_pred HHHHHHHhc---CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHH-HHHhc
Confidence 345555554 689999753 5667778888888876 3455544444554444 44444
No 298
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=20.55 E-value=88 Score=22.99 Aligned_cols=35 Identities=6% Similarity=0.226 Sum_probs=24.5
Q ss_pred CCcE--EEEeC-chHHHHHHHHHHHh----------CCC-eEEEecCCC
Q psy1621 90 ITQA--VIFCN-TRRKVDWLTESMLK----------KEF-TVSAMHGDM 124 (224)
Q Consensus 90 ~~~~--iIf~~-t~~~~~~l~~~L~~----------~~~-~~~~~~g~~ 124 (224)
..++ |+||. +-..+...+..|.+ .|+ ++..+.||+
T Consensus 109 d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~ 157 (211)
T 1qb0_A 109 DKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 157 (211)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred CCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHH
Confidence 4555 66788 66666677777764 476 688899984
No 299
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=20.51 E-value=59 Score=21.79 Aligned_cols=111 Identities=11% Similarity=0.101 Sum_probs=62.6
Q ss_pred EEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy1621 68 YIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITT 147 (224)
Q Consensus 68 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t 147 (224)
+..++.+..-...+..++.... ..++-.+.+-+++- +.+.+..+.+..+.=.|+...-..+.+..++..+.|++.|
T Consensus 11 ILiVdD~~~~~~~l~~~L~~~G-~~v~~~a~~g~eAl---~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 11 VLVVEDESMIAMLIEDTLCELG-HEVAATASRMQEAL---DIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp EEEESSSTTTSHHHHHHHHHHC-CCCCBCSCCHHHHH---HHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred EEEEeCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHH---HHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 4455555545666777776532 33321234444443 4455677888888777765555556666666667777777
Q ss_pred CCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccC
Q psy1621 148 DLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGR 183 (224)
Q Consensus 148 ~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R 183 (224)
......... .....-...-|.++....+++.|..|
T Consensus 87 a~~~~~~~~-~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 87 GYGSKGLDT-RYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp TTCTTSCCS-SSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred cCccHHHHH-hCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 543322221 11111124578888888888777654
No 300
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=20.27 E-value=3.3e+02 Score=21.73 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=33.5
Q ss_pred CchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy1621 98 NTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTD 148 (224)
Q Consensus 98 ~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~ 148 (224)
++++.++.+.+.+++.+..+.+--||=+.-+-.+... +..+..-|.|-|.
T Consensus 70 ~~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA-~~~~~p~i~IPTT 119 (370)
T 1jq5_A 70 ASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVA-DELDAYIVIVPTA 119 (370)
T ss_dssp CBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHH-HHHTCEEEEEESS
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHH-HhcCCCEEEeccc
Confidence 3667888888888888877666555545555555555 4456666777776
No 301
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=20.22 E-value=2.3e+02 Score=19.90 Aligned_cols=56 Identities=9% Similarity=0.026 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHhCCCeEEEec-CCCCHHHHHHHHHH-hhcCCceEEEEcCCcccCCC
Q psy1621 100 RRKVDWLTESMLKKEFTVSAMH-GDMDQNARDVIMRQ-FRSGSSRVLITTDLLARGID 155 (224)
Q Consensus 100 ~~~~~~l~~~L~~~~~~~~~~~-g~~~~~~r~~~~~~-f~~~~~~ilv~t~~~~~Gvd 155 (224)
......+++.|.+.|+.+..+. -....+.-...+.. ...++.+++++|--.+.|-|
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~~ 96 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPT 96 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTT
T ss_pred cchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccCCC
Confidence 3455678999999998764432 23334444444443 34567889999987777754
No 302
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=20.16 E-value=1.2e+02 Score=23.60 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=26.5
Q ss_pred CCCcEEEEeCch---HHHHHHHHHHHhCCCe-EEEecCCC
Q psy1621 89 SITQAVIFCNTR---RKVDWLTESMLKKEFT-VSAMHGDM 124 (224)
Q Consensus 89 ~~~~~iIf~~t~---~~~~~l~~~L~~~~~~-~~~~~g~~ 124 (224)
+..++||||.+. ..+..++..|+..|+. +..+.||+
T Consensus 106 ~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~ 145 (302)
T 3olh_A 106 AATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGL 145 (302)
T ss_dssp SSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCH
Confidence 456799999642 2467788888888884 88888864
Done!