RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1621
(224 letters)
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 148 bits (375), Expect = 3e-46
Identities = 106/161 (65%), Positives = 138/161 (85%)
Query: 64 IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGD 123
I+QFY+ +E E++K++ L DLY ++S+TQAVIFCNTRRKV+ LT + +FTVSA++ D
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 60
Query: 124 MDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGR 183
+ Q RD IM++FRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP+N+ENYIHRIGRGGR
Sbjct: 61 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 120
Query: 184 FGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224
FGRKGVAINFVT ED +++ E+FY+T+IEE+P ++A L+
Sbjct: 121 FGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 161
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 137 bits (345), Expect = 1e-41
Identities = 117/162 (72%), Positives = 142/162 (87%)
Query: 63 RIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHG 122
I+QF++ +ERE+WKFDTLCDLY TL+ITQAVIFCNT+RKVDWLTE M + FTVS+MHG
Sbjct: 7 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHG 66
Query: 123 DMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGG 182
DM Q R+ IM++FRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP+NRE YIHRIGR G
Sbjct: 67 DMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSG 126
Query: 183 RFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224
R+GRKGVAINFV +D R L+D EQ+Y+T+I+EMPMNVADLI
Sbjct: 127 RYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 168
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 120 bits (302), Expect = 3e-35
Identities = 67/162 (41%), Positives = 106/162 (65%), Gaps = 6/162 (3%)
Query: 63 RIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHG 122
IRQ+Y+ E K+ LC++YG+++I QA+IFC TRR WLT M++ VS + G
Sbjct: 5 NIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSG 64
Query: 123 DMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNR------ENYIH 176
++ R I+++FR G +VLITT++ ARGIDV+QV++V+N+DLP + E Y+H
Sbjct: 65 ELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLH 124
Query: 177 RIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPM 218
RIGR GRFG+KG+A N + ++ +L + +N+ I+++
Sbjct: 125 RIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNA 166
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 118 bits (297), Expect = 5e-33
Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 14/120 (11%)
Query: 92 QAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNAR----------DVIMRQFRSGSS 141
+ +IFC++++K D L ++ A + +D + + +G
Sbjct: 38 RHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDF 97
Query: 142 RVLITTDLLARG---IDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAED 198
+I + + + LP + + R GR GR G+ G+ E
Sbjct: 98 DSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGER 156
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 110 bits (275), Expect = 3e-31
Identities = 56/153 (36%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Query: 64 IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGD 123
I Q Y+ + E+ +F+ LC L ++FC T+R L + F A+HGD
Sbjct: 4 IEQSYVEVN-ENERFEALCRLLKNKEF-YGLVFCKTKRDTKELASMLRDIGFKAGAIHGD 61
Query: 124 MDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGR 183
+ Q+ R+ ++R F+ R+LI TD+++RGIDV ++ VINY LP N E+Y+HRIGR GR
Sbjct: 62 LSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR 121
Query: 184 FGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEM 216
G+KG AI+ + + + L+ E+ +I+++
Sbjct: 122 AGKKGKAISIINRREYKKLRYIERAMKLKIKKL 154
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 103 bits (257), Expect = 2e-28
Identities = 63/157 (40%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 64 IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGD 123
I Q+Y ++E E K L L+ L I QA+IFCN+ +V+ L + + ++ H
Sbjct: 7 ITQYYAFVE-ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHAR 65
Query: 124 MDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGR 183
M Q R+ + +FR G R L+ +DLL RGID+Q V++VIN+D P E Y+HRIGR GR
Sbjct: 66 MKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGR 125
Query: 184 FGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNV 220
FG G+AIN + D+ L EQ T I +P +
Sbjct: 126 FGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 162
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 102 bits (254), Expect = 3e-27
Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 17/166 (10%)
Query: 64 IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGD 123
+R + D TL + L T +I+ T + + + E LK +F
Sbjct: 1 VRNV-EDVAVNDESISTLSSILEKLG-TGGIIYARTGEEAEEIYE-SLKNKF-----RIG 52
Query: 124 MDQNARDVIMRQFRSGSSRVLITT----DLLARGIDVQQ-VSLVINYDLPSNRENYIHRI 178
+ + +F G LI T L RG+D+ + + + P ++ I
Sbjct: 53 IVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTI 108
Query: 179 GRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224
+ V + + ++ I+E+ + ++
Sbjct: 109 EDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVM 154
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 96.9 bits (240), Expect = 7e-25
Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 17/151 (11%)
Query: 74 EDWKFDTLCDLYGTL----SITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNAR 129
+ K D L ++ ++ ++F N R + ++K G +
Sbjct: 141 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 200
Query: 130 --------DVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRG 181
+I+ +F G VL+ T + G+DV +V LV+ Y+ + I R GR
Sbjct: 201 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRT 260
Query: 182 GRFGRKGVAINFVTAEDKRTLKDTEQFYNTR 212
GR G I + +D ++++R
Sbjct: 261 GR-HMPGRVIILMAKGT----RDEAYYWSSR 286
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 90.9 bits (224), Expect = 1e-23
Identities = 53/158 (33%), Positives = 93/158 (58%), Gaps = 2/158 (1%)
Query: 64 IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGD 123
++Q+Y+ ++ ++ K L DL L Q VIF + ++ L + ++++ F A+H
Sbjct: 2 LQQYYVKLK-DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG 60
Query: 124 MDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGR 183
M Q R +QF+ R+L+ T+L RG+D+++V++ NYD+P + + Y+HR+ R GR
Sbjct: 61 MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 120
Query: 184 FGRKGVAINFVTAE-DKRTLKDTEQFYNTRIEEMPMNV 220
FG KG+AI FV+ E D + L D + + I E+P +
Sbjct: 121 FGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 81.5 bits (200), Expect = 1e-19
Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 6/131 (4%)
Query: 65 RQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDM 124
I ++ K L ++ + +IF V +++ + A+
Sbjct: 69 EARRIAFNSKN-KIRKLREILERHRKDKIIIFTRHNELVYRISKVF-----LIPAITHRT 122
Query: 125 DQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRF 184
+ R+ I+ FR+G R ++++ +L GIDV ++ + + YI R+GR R
Sbjct: 123 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP 182
Query: 185 GRKGVAINFVT 195
+
Sbjct: 183 SKGKKEAVLYE 193
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 76.3 bits (187), Expect = 2e-18
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 92 QAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151
+ +IFC++++K D L ++ A + +D + + V++ TD L
Sbjct: 37 RHLIFCHSKKKCDELAAKLVALGINAVAYYRGLD-------VSVIPTNGDVVVVATDALM 89
Query: 152 RGIDVQQVS---LVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDK 199
G S + P + + R GR GR G+ G+ FV ++
Sbjct: 90 TGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGER 138
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 77.8 bits (190), Expect = 2e-18
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 1/160 (0%)
Query: 60 SMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSA 119
S R Y+ +E+ D L +I+CN+R KV+ + K + +A
Sbjct: 1 SFDRPNIRYMLMEKFK-PLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAA 59
Query: 120 MHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIG 179
H ++ N R + +F+ ++++ T GI+ V V+++D+P N E+Y G
Sbjct: 60 YHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETG 119
Query: 180 RGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMN 219
R GR G A+ F D L+ + +
Sbjct: 120 RAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIER 159
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 67.5 bits (164), Expect = 9e-15
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 92 QAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151
+ ++ T++ + LT+ + + V+ +H ++ R I+R R G VL+ +LL
Sbjct: 33 RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 92
Query: 152 RGIDVQQVSLVINYDLP-----SNRENYIHRIGRGGRFGRKGVAINFVTA--------ED 198
G+D+ +VSLV D + + I IGR R V + T ++
Sbjct: 93 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADTITKSMEIAIQE 152
Query: 199 KRTLKDTEQFYNTRIEEMPMNV 220
+ + ++ YN + +P V
Sbjct: 153 TKRRRAIQEEYNRKHGIVPRTV 174
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 64.9 bits (157), Expect = 4e-13
Identities = 26/190 (13%), Positives = 46/190 (24%), Gaps = 30/190 (15%)
Query: 30 GFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWK--FDTLCDLYGT 87
G+ + A A S I I W + + D G
Sbjct: 121 GYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKG- 179
Query: 88 LSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITT 147
+ V F + + + + + K V + + ++TT
Sbjct: 180 ----KTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDW----DFVVTT 231
Query: 148 DLLARGIDV---------QQVSLVINYDLPSN----------RENYIHRIGRGGRFGRKG 188
D+ G + + + VI D + R GR GR +
Sbjct: 232 DISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNE 291
Query: 189 VAINFVTAED 198
E
Sbjct: 292 NDQYIYMGEP 301
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 62.8 bits (152), Expect = 5e-13
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 92 QAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151
+ ++ T R + LT +++ +H ++D R ++R R G L+ +LL
Sbjct: 33 RTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR 92
Query: 152 RGIDVQQVSLVINYDL-----PSNRENYIHRIGRGGRF--GRKGVAINFVTAEDKRTLKD 204
G+D+ +VSLV D + + I IGR R G + + V+ +R +++
Sbjct: 93 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEE 152
Query: 205 TEQ 207
T +
Sbjct: 153 TNR 155
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 51.8 bits (123), Expect = 6e-09
Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 39/152 (25%)
Query: 92 QAVIFCNTRRKVDWLTESMLKKEFT------------------------------VSAMH 121
++F +TRR + + + H
Sbjct: 42 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 101
Query: 122 GDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI-------NYDLPSNRENY 174
+ R V+ FR G+ +V++ T LA G+++ +++ Y Y
Sbjct: 102 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEY 161
Query: 175 IHRIGRGGRFGR--KGVAINFVTAEDKRTLKD 204
GR GR G +G AI V D+
Sbjct: 162 KQMAGRAGRPGMDERGEAIIIVGKRDREIAVK 193
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 41.8 bits (98), Expect = 2e-05
Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 10/116 (8%)
Query: 91 TQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLL 150
++ + +++ + K ++ + +I + G+ V I T++
Sbjct: 35 QPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMA 92
Query: 151 ARGIDVQQVSLVINYD--------LPSNRENYIHRIGRGGRFGRKGVAINFVTAED 198
RG D++ V +R GR GR G G+ +++ ED
Sbjct: 93 GRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 38.0 bits (87), Expect = 5e-04
Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Query: 76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQ 135
D + + T + + V+ N + +D + + + + G M R I+ +
Sbjct: 104 LVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVER 163
Query: 136 FRSGSS---RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRK 187
F + SS ++++ G+++ + ++ +D N N + R R G+K
Sbjct: 164 FNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQK 218
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 37.3 bits (86), Expect = 9e-04
Identities = 17/131 (12%), Positives = 36/131 (27%), Gaps = 21/131 (16%)
Query: 92 QAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLA 151
F + R + + S+ K +V ++ + + ++ TD+
Sbjct: 38 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKT----FEREYPTIKQKKPDFILATDIAE 93
Query: 152 RGIDVQQVSLVINYDLPSNRENY----------IHRIGRG------GRFGRKGVAINFVT 195
G ++ V V++ RI GR GR
Sbjct: 94 MGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSY 152
Query: 196 AEDKRTLKDTE 206
+ T ++
Sbjct: 153 YYSEPTSENNA 163
>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 180
Score = 25.4 bits (55), Expect = 5.1
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 63 RIRQFYIYIEREDWKF 78
++RQFY+ + W +
Sbjct: 2 KLRQFYVAAQSIRWNY 17
>d1f0la2 d.166.1.1 (A:1-187) Diphtheria toxin, N-terminal domain
{Corynebacterium diphtheriae [TaxId: 1717]}
Length = 187
Score = 25.1 bits (54), Expect = 5.7
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 102 KVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLIT 146
KVD +KKE +S M+Q + +++F G+SRV+++
Sbjct: 95 KVD--NAETIKKELGLSLTEPLMEQVGTEEFIKRFGDGASRVVLS 137
>d1fxwf_ c.23.10.3 (F:) Platelet-activating factor acetylhydrolase
{Cow (Bos taurus), alpha2 [TaxId: 9913]}
Length = 212
Score = 24.6 bits (52), Expect = 9.3
Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 10/126 (7%)
Query: 53 RVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLK 112
VL VGDSM ++ Q Y E W+ +L+ L I +T R V W ++
Sbjct: 36 DVLFVGDSMVQLMQQY-----EIWR-----ELFSPLHALNFGIGGDTTRHVLWRLKNGEL 85
Query: 113 KEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRE 172
+ + + N + + G ++ + + + L+ + P+
Sbjct: 86 ENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLR 145
Query: 173 NYIHRI 178
++
Sbjct: 146 QKNAKV 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.410
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 860,051
Number of extensions: 38440
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 25
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.2 bits)