RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16210
         (517 letters)



>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal
           domain {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 191

 Score = 28.6 bits (63), Expect = 1.3
 Identities = 6/71 (8%), Positives = 16/71 (22%), Gaps = 2/71 (2%)

Query: 356 GQVHAGLLKDGTEVAMKIQYPGVAKGIESDIDNLIGVMKIWNVFPEGMFL--DNLVEVAK 413
             V     +   E  +K    G     +       G +    +           L ++  
Sbjct: 14  SAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG 73

Query: 414 KELGWEVDYKR 424
             +     ++ 
Sbjct: 74  LAVPKVYAWEG 84


>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 272

 Score = 28.5 bits (63), Expect = 2.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 354 SIGQVHAGLLKDGTEVAMKI 373
             G+V  G     T+VA+K 
Sbjct: 25  QFGEVWMGYYNGHTKVAVKS 44


>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase
           {Pseudomonas nautica [TaxId: 2743]}
          Length = 166

 Score = 27.9 bits (61), Expect = 2.3
 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 189 DEDVARAPGAPKPIPKAKNKPQLNPVAKQRKVPSSRLGRMVSF-GSLAAGLGVGTIAEVT 247
           D  + RA    +PIPK       N + +  KV    LG+M  F   L+       I+  T
Sbjct: 1   DNLMERANSMFEPIPKYPPVIDGNELTQA-KV---ELGKMEFFEPRLS---SSHLISCNT 53

Query: 248 RRTLGFGDSSLSVGTTLDSAFINPANAERIVNT 280
              +G G       +        P N+  + N 
Sbjct: 54  CHNVGLGGDDELPTSIGHGWQKGPRNSPTVFNA 86


>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 263

 Score = 28.1 bits (62), Expect = 2.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 356 GQVHAGLLKDGTEVAMKI 373
           G VH G   +  +VA+K 
Sbjct: 19  GLVHLGYWLNKDKVAIKT 36


>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 258

 Score = 27.7 bits (61), Expect = 3.5
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 356 GQVHAGLLKDGTEVAMKI 373
           G V  G  +   +VA+K+
Sbjct: 18  GVVKYGKWRGQYDVAIKM 35


>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 285

 Score = 27.4 bits (60), Expect = 3.9
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 356 GQVHAGLLKDGTEVAMKI 373
           G+V  G     T VA+K 
Sbjct: 31  GEVWMGTWNGTTRVAIKT 48


>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium
           falciparum) [TaxId: 5833]}
          Length = 286

 Score = 27.2 bits (59), Expect = 5.1
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 14/96 (14%)

Query: 356 GQVHAGLLKDGTEVAMKI-----QYPGVAKGIESDIDNL-----IGVMKIWNVFPEGMFL 405
           G V+      G   A+K      +  G+      +I  L       ++K+++V      L
Sbjct: 16  GVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRL 75

Query: 406 DNLVEVAKKELGWEVDYKR----EAECTRKFKELVE 437
             + E   ++L   +D                +L+ 
Sbjct: 76  VLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLN 111


>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
           (RecD) {Escherichia coli [TaxId: 562]}
          Length = 359

 Score = 26.8 bits (58), Expect = 7.6
 Identities = 19/98 (19%), Positives = 40/98 (40%)

Query: 18  LVANAGIKHQTLEIQQKWTNSSFKSLASNLDQSLKSTSTTPCALLNANVLKEAAERSSVV 77
           L  +AG  H  L + +   N +   L +     +         LL +  +    E + ++
Sbjct: 41  LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMI 100

Query: 78  LDGVKAFVFKEAGSERDVSEFEQDSQYSEPVDSTPIPQ 115
           L G + ++ +   +ER V+ F  +  ++  VD   + Q
Sbjct: 101 LCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQ 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,804,774
Number of extensions: 82971
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 8
Length of query: 517
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 428
Effective length of database: 1,185,626
Effective search space: 507447928
Effective search space used: 507447928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.5 bits)