RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16211
(340 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-05
Identities = 45/318 (14%), Positives = 93/318 (29%), Gaps = 74/318 (23%)
Query: 63 ESDIDNLIGVM-----KIWNVFPEGMFLDN---LVEVAKKE-LGWEVDYKREAECTRKFK 113
S L + ++ F E + N L+ K E + + E +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 114 ELVEPYPYYFVP---------TVIDELSTGQILTTELIEGVPVDQCVDLDYESRKHICKL 164
+ + Y V + EL + + I+GV S K +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---IDGVL---------GSGKTW--V 166
Query: 165 VMELCLRELFQFRYMQTDPN---WSNF-FYNKDTKQLILLDFGATRAYSKEFMDQYIQVI 220
+++CL Q + W N N L +L ++ + Q
Sbjct: 167 ALDVCLSYKVQCKM----DFKIFWLNLKNCNSPETVLEML---------QKLLYQIDPNW 213
Query: 221 KAGADGDKDKVLTISRKMGFLTGYESKIMEEAHVNTVMILSEVFSEKIGE-FDFGGQD-- 277
+ +D + L I L + + + N +++L V + K F+ +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRL---LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 278 TT--KRITELVPTILNHRLCPPPEEIYSLHRKLSGVFLLCSKLKVKM----AC--YPML- 328
TT K++T+ + + + ++ + L + + P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 329 ----------KDVYDNYK 336
+DN+K
Sbjct: 331 SIIAESIRDGLATWDNWK 348
Score = 39.1 bits (90), Expect = 0.002
Identities = 38/305 (12%), Positives = 88/305 (28%), Gaps = 86/305 (28%)
Query: 62 IESDIDNLIGVMKIWNVFPEGMF-LDNLVEVAKKELGWEV-DYKREAEC-----TRKFKE 114
I S L ++K + + L N V + W + C TR FK+
Sbjct: 227 IHSIQAELRRLLK-SKPYENCLLVLLN---VQNAKA-WNAFNLS----CKILLTTR-FKQ 276
Query: 115 LVE--PYPYYFVPTVIDELSTGQILTTELIEGVPVDQCVDLDYES-RKHICK---LVMEL 168
+ + ++ T LT + ++ + + + +D + + + + +
Sbjct: 277 VTDFLSAATTTHISLDHHSMT---LTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 169 CLRELFQFRYMQTDPN-WSNF-FYNKDTKQLIL------LDFGATRAYSKEFM----DQY 216
+ + W N+ N D I+ L+ R +
Sbjct: 333 IAESI------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 217 IQVIKAGADGDKDKVLTISRKMGFLTGYESKIMEEAHVNTVMILSEVFSEKIGEFDFGGQ 276
I +L++ + K ++++++ + E +
Sbjct: 387 I----------PTILLSL------IWFDVIKSDVM------VVVNKLHKYSLVEKQ--PK 422
Query: 277 DTTKRITELVPTILNH----RLCPPPEEIYSLHRKLSGVFLLCSKLKVKMACYPMLKDVY 332
++T I L E Y+LHR + + + ++
Sbjct: 423 ESTISI---------PSIYLELKVKLENEYALHRSI----VDHYNIPKTFDSDDLIPPYL 469
Query: 333 DNYKF 337
D Y +
Sbjct: 470 DQYFY 474
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 48/296 (16%), Positives = 98/296 (33%), Gaps = 96/296 (32%)
Query: 26 DLKPFAAASIGQVHAGLLKDGTEVAMKIQYPGVAKGIESDIDNLIGVMKIWNVFPEGMFL 85
+L+ + + G GL+ A+ I ES ++ + + +F
Sbjct: 262 ELRSYLKGATGHS-QGLV-----TAVAIA---ETDSWESFFVSVRKAITV-------LFF 305
Query: 86 DNLVEVAKKELGWEVDYKREAECTRKFKELVEPYPYYFVP--TVIDELSTGQILTTELIE 143
+G C E YP +P + D L E
Sbjct: 306 ----------IGVR--------CY-------EAYPNTSLPPSILEDSLENN--------E 332
Query: 144 GVPVDQ--CVDLDYESRKHICKLVMELCLRELFQFRYMQTDPNWSNFFYNKDTKQLILLD 201
GVP +L +++ + V + L + ++ S N K L++
Sbjct: 333 GVPSPMLSISNL---TQEQVQDYVNKTN-SHLPAGKQVEI----SLV--NGA-KNLVVS- 380
Query: 202 FGATRA-YSKEFMDQYIQVIKAGADGDKDKVLTISRK----MGFL---TGYESKIMEEAH 253
G ++ Y ++ ++ KA + D+ ++ RK FL + + S ++ A
Sbjct: 381 -GPPQSLYG---LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA- 435
Query: 254 VNTVMILSEVFSEKIGEFD-----------FGGQD---TTKRITE-LVPTILNHRL 294
+ +I ++ + F+ F G D + I+E +V I+ +
Sbjct: 436 --SDLINKDLVKNNV-SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 35.8 bits (82), Expect = 0.020
Identities = 33/238 (13%), Positives = 63/238 (26%), Gaps = 73/238 (30%)
Query: 124 VPTVIDELSTGQILTTELIEGVP-VDQCVDLDYESRKHICKLVMELCLRELFQFRYMQTD 182
VPT L + + +P + D E EL + L + +
Sbjct: 22 VPT--ASFFIASQLQEQFNKILPEPTEGFAADDEPTT-----PAELVGKFL-GYVSSLVE 73
Query: 183 PNWSNFFYNKDTKQLILLDFGATRAYSKEFMDQY-----IQVIKAGADGDKDKVLTISRK 237
P+ Q++ L EF + Y I + A + D T+ +
Sbjct: 74 PS-----KVGQFDQVLNLCL-------TEFENCYLEGNDIHALAAKLLQENDT--TLVKT 119
Query: 238 MGFLTGY---------------ESKIMEEAHVNTVMILSEVFSEKIGEFDFGGQ-DTTKR 281
+ Y S + ++ + FGGQ +T
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA----QLVAI------FGGQGNTDDY 169
Query: 282 ITELVPTILNHRLCPPPEEIYSLHRKLSGVFL------LCSKLKVKMACYPMLKDVYD 333
EL ++Y + L G + L ++ + + +
Sbjct: 170 FEEL-------------RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Score = 31.6 bits (71), Expect = 0.52
Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 94/266 (35%)
Query: 112 FKELVEPYPYYFVPTVIDEL--STGQILTTELIE-----------GVPV-------DQCV 151
F+EL + Y Y ++ +L + + L +ELI G+ +
Sbjct: 170 FEELRDLYQTY--HVLVGDLIKFSAETL-SELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 152 DLDYESRKHI-CKLVMELCLRELFQF----RYMQTDPNWSNFFYNKDTKQLILLDFGATR 206
D DY I C L + + +L + + + P L GAT
Sbjct: 227 DKDYLLSIPISCPL---IGVIQLAHYVVTAKLLGFTP--GELR-----SYLK----GAT- 271
Query: 207 AYSKEFMDQYIQVIKA----GADGDKD------KVLTISRKMGFLTGYESKIMEEAHVNT 256
+S+ ++ A D + K +T+ F G EA+ NT
Sbjct: 272 GHSQG-------LVTAVAIAETDSWESFFVSVRKAITVL----FFIGVRCY---EAYPNT 317
Query: 257 VMILSEV-FSEKIGEFDFGGQDT---------TKRITELVPTILNHRLCPPPEEIY-SLH 305
+ S + S + E G + +++ + V N L P +++ SL
Sbjct: 318 SLPPSILEDSLENNE----GVPSPMLSISNLTQEQVQDYV-NKTNSHL-PAGKQVEISLV 371
Query: 306 ---RK--LSG----VFLLCSKL-KVK 321
+ +SG ++ L L K K
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAK 397
Score = 27.7 bits (61), Expect = 6.8
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 18/108 (16%)
Query: 9 VLVTELGP--DWKSKLSSLDLKPFAAASIGQ----VH-AGLLKDGTEVAMKI-QYPGVAK 60
+ + E D KSK FA S+G+ A ++ E +++ Y G+
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS--IESLVEVVFYRGMTM 1793
Query: 61 GIESDIDNL-IGVMKIWNVFPEGMF-------LDNLVEVAKKELGWEV 100
+ D L + + P + L +VE K GW V
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC,
heterodimer, chaperone; 1.90A {Homo sapiens}
Length = 58
Score = 29.0 bits (65), Expect = 0.32
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 271 FDFGGQDTTKRITELVPTILNH 292
F G TK++TE++P+ILN
Sbjct: 36 FTITGHAETKQLTEMLPSILNQ 57
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo
sapiens}
Length = 66
Score = 29.0 bits (65), Expect = 0.38
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 271 FDFGGQDTTKRITELVPTILNHRLCPPPEEIYSL 304
F G TK++TE++P+ILN + + SL
Sbjct: 36 FTITGHAETKQLTEMLPSILNQ---LGADSLTSL 66
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex,
layered beta- sheets, transferas; HET: SEP TPO; 3.20A
{Solanum pimpinellifolium} PDB: 3hgk_A*
Length = 321
Score = 29.1 bits (66), Expect = 1.9
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 36 GQVHAGLLKDGTEVAMK 52
G+V+ G+L+DG +VA+K
Sbjct: 53 GKVYKGVLRDGAKVALK 69
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase,
protein kinase, transferase; HET: SEP TPO ANP; 2.20A
{Arabidopsis thaliana} PDB: 3tl8_A*
Length = 326
Score = 29.1 bits (66), Expect = 2.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 36 GQVHAGLLKDGTEVAMK 52
G+V+ G L DGT VA+K
Sbjct: 44 GKVYKGRLADGTLVAVK 60
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.4
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 24/51 (47%)
Query: 19 KSKLSSLD--LKPFAAASIGQVHAGLLKDGTEVAMKIQYPGVAKGIESDID 67
K L L LK +A S A P +A I++ ++
Sbjct: 19 KQALKKLQASLKLYADDS-----A---------------PALA--IKATME 47
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio
parahaemolyticus RIMD 2210633, STR genomics, PSI-2,
protein structure initiative; 1.48A {Vibrio
parahaemolyticus}
Length = 165
Score = 26.9 bits (59), Expect = 6.8
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 86 DNLVEVAKKELGWEVDYKREAECTRKFKELVEPYPYYFVP 125
N+ ++ DY + + KE+V Y
Sbjct: 19 QNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIAS 58
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase;
transcription hydrolase complex, nucleotide-binding;
2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Length = 109
Score = 26.4 bits (58), Expect = 7.1
Identities = 11/65 (16%), Positives = 27/65 (41%)
Query: 11 VTELGPDWKSKLSSLDLKPFAAASIGQVHAGLLKDGTEVAMKIQYPGVAKGIESDIDNLI 70
V+++ D + + S F + ++ LK G VA+ Q + + + D ++
Sbjct: 43 VSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMV 102
Query: 71 GVMKI 75
++
Sbjct: 103 YGFEV 107
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2
d.41.2.2
Length = 441
Score = 27.4 bits (61), Expect = 8.5
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 176 FRYMQTDPNWSNFFYNKDTK-------QLILLDFGATRAYSKEFMDQYIQVIKAGADGDK 228
F+++ D ++ N + K + +FG R S + D +Q I +G+
Sbjct: 156 FKFVDIDWDYENQLEQAEKKAETLFDNGIRFSEFGTRRRRSLKAQDLIMQGIMKAVNGNP 215
Query: 229 DK 230
D+
Sbjct: 216 DR 217
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
3sdj_A*
Length = 434
Score = 27.1 bits (60), Expect = 8.8
Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 155 YESRKHICKLVMELCLRELFQF 176
+ + + + +ELC L
Sbjct: 78 ETTDRFLY-IALELCNLNLQDL 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.416
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,377,509
Number of extensions: 330393
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's gapped: 655
Number of HSP's successfully gapped: 36
Length of query: 340
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 246
Effective length of database: 4,077,219
Effective search space: 1002995874
Effective search space used: 1002995874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)