RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16211
(340 letters)
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 141
Score = 28.5 bits (63), Expect = 0.56
Identities = 11/64 (17%), Positives = 24/64 (37%)
Query: 172 ELFQFRYMQTDPNWSNFFYNKDTKQLILLDFGATRAYSKEFMDQYIQVIKAGADGDKDKV 231
+ Q W D++ + G R + EF+ + ++ + G + KV
Sbjct: 65 AMIQVLMAGHRSGWKCMVICGDSEDQCVSPCGVCRQFINEFVVKDFPIVMLNSTGSRSKV 124
Query: 232 LTIS 235
+T+
Sbjct: 125 MTMG 128
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 27.3 bits (60), Expect = 3.0
Identities = 18/128 (14%), Positives = 46/128 (35%), Gaps = 14/128 (10%)
Query: 89 VEVAKKELGWEVDYKREAECTRKFKE--LVEPYPYYFVPTVIDELSTGQILTTELIEGVP 146
+ K + +V K+E + ++ + + + ++ E I G+
Sbjct: 35 AKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEEL-------VMIFEFISGLD 87
Query: 147 VDQCVDLDYE--SRKHICKLVMELC--LRELFQFRYMQTDPNWSNFFY-NKDTKQLILLD 201
+ + ++ + + I V ++C L+ L D N Y + + + +++
Sbjct: 88 IFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIE 147
Query: 202 FGATRAYS 209
FG R
Sbjct: 148 FGQARQLK 155
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase,
C-terminal domain {Agrobacterium tumefaciens [TaxId:
358]}
Length = 266
Score = 26.8 bits (59), Expect = 3.5
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 192 KDTKQLILLDFGATRAYSKEFMDQYIQVIKA----GADG 226
++ L + DFG R +S + ++ +K G
Sbjct: 24 RELPGLRISDFGTRRRHSFLWQRWCVEALKEGIGPAFTG 62
>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 272
Score = 26.9 bits (59), Expect = 3.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 34 SIGQVHAGLLKDGTEVAMKI 53
G+V G T+VA+K
Sbjct: 25 QFGEVWMGYYNGHTKVAVKS 44
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human
(Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 26.6 bits (58), Expect = 3.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 36 GQVHAGLLKDGTEVAMKI 53
G VH G + +VA+K
Sbjct: 19 GLVHLGYWLNKDKVAIKT 36
>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 26.2 bits (57), Expect = 5.2
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 36 GQVHAGLLKDGTEVAMKI 53
G+V G T VA+K
Sbjct: 31 GEVWMGTWNGTTRVAIKT 48
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 266
Score = 26.1 bits (57), Expect = 5.5
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 197 LILLDFGATRAYSKEFMDQYIQVIKAGADG 226
+ +FG R S + D +Q I +G
Sbjct: 23 IRFSEFGTRRRRSLKAQDLIMQGIMKAVNG 52
>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal
domain {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 191
Score = 25.9 bits (56), Expect = 5.6
Identities = 6/71 (8%), Positives = 16/71 (22%), Gaps = 2/71 (2%)
Query: 36 GQVHAGLLKDGTEVAMKIQYPGVAKGIESDIDNLIGVMKIWNVFPEGMFL--DNLVEVAK 93
V + E +K G + G + + L ++
Sbjct: 14 SAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG 73
Query: 94 KELGWEVDYKR 104
+ ++
Sbjct: 74 LAVPKVYAWEG 84
>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 26.2 bits (57), Expect = 5.8
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 36 GQVHAGLLKDGTEVAMKI 53
G V G + +VA+K+
Sbjct: 18 GVVKYGKWRGQYDVAIKM 35
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 270
Score = 26.1 bits (57), Expect = 6.2
Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 11/147 (7%)
Query: 82 GMFLDNLVEVAKKELGWEVDYKREAECTRK----FKELVEPY--PYYFVPTVIDELSTGQ 135
G+ + VEVA EL K E + ++ K L P +Y +
Sbjct: 28 GLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCI 87
Query: 136 ILTTELIEGVPVDQCVD----LDYESRKHICKLVMELCLR-ELFQFRYMQTDPNWSNFFY 190
+L TEL+ + + + + + C+ +++ + D N F
Sbjct: 88 VLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFI 147
Query: 191 NKDTKQLILLDFGATRAYSKEFMDQYI 217
T + + D G F I
Sbjct: 148 TGPTGSVKIGDLGLATLKRASFAKAVI 174
>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain
{Bacillus sp. [TaxId: 1409]}
Length = 357
Score = 26.0 bits (56), Expect = 7.8
Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 16/107 (14%)
Query: 174 FQFRYMQT-DPNWSNFFYNKDTKQLILLDFGA------------TRAYSKEFMDQYIQVI 220
Q R M T W N++ + D+G+ A + E D + I
Sbjct: 35 VQLRGMSTHGLQWFGEIVNENAFVALSNDWGSNMIRLAMYIGENGYATNPEVKDLVYEGI 94
Query: 221 KAGADGDKDKVLTISRKMGFLTGYESKIMEEAHVNTVMILSEVFSEK 267
+ + + I G + + +++ + +
Sbjct: 95 ELAF---EHDMYVIVDWHVHAPGDPRADVYSGAYDFFEEIADHYKDH 138
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 175
Score = 25.6 bits (55), Expect = 8.3
Identities = 9/65 (13%), Positives = 21/65 (32%)
Query: 54 QYPGVAKGIESDIDNLIGVMKIWNVFPEGMFLDNLVEVAKKELGWEVDYKREAECTRKFK 113
P K + ++ +++ + +L L + K+ G +K K
Sbjct: 110 DIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGSLDFFKSLNAGELKKA 169
Query: 114 ELVEP 118
+P
Sbjct: 170 APADP 174
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.416
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,318,631
Number of extensions: 63559
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 15
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)