BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16212
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10998|CP1_APLCA Cerebral peptide 1 OS=Aplysia californica PE=1 SV=2
Length = 209
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 25 KRASEEGKRASEEGKRGSK-EGKRALEEGKRASE--EGKRGSKEGKRASDEGKRASEEGK 81
KRA GKR S GS E KRA GKR E + GS++ KRA GKRA GK
Sbjct: 78 KRAPGWGKRFSGLMSEGSSLEAKRAPGWGKRGQEIDVDEDGSEQEKRAPGWGKRAPGWGK 137
Query: 82 RASEEGKRASEEGKRASEEGKRASEEGK 109
RA GKRA GKRA GKRA GK
Sbjct: 138 RAPGWGKRAPGWGKRAPGWGKRAPGWGK 165
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 25/45 (55%)
Query: 25 KRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRA 69
KRA GKRA GKR GKRA GKRA GKR GKR+
Sbjct: 123 KRAPGWGKRAPGWGKRAPGWGKRAPGWGKRAPGWGKRAPGWGKRS 167
>sp|Q5GC94|MAXSA_BOMMX Maximins-S type A OS=Bombina maxima PE=1 SV=1
Length = 235
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 19 RGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASE 78
+ L GKR++EE A + RGS +G + + A GKR ++E A D KR S
Sbjct: 79 QALSNGKRSAEEQDLAEDLVTRGSNKGFNFMVDMINALSNGKRSAEEQDLAEDLVKRGSN 138
Query: 79 EGK-------RASEEGKRASEEGKRASEEGKRASEEGKGVQLDIIKCRKCG 122
+G A GKR++EE A + R S +G +D+I+ G
Sbjct: 139 KGFNFMVDMINALSNGKRSAEEQDLAEDLVTRRSNKGFNFMVDMIQALSKG 189
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 21 LKEGKRASEEGKRASEEGKRGSKEGK-------RALEEGKRASEEGKRGSKEGKRASDEG 73
L + KR++EE A + KRGS +G +AL GKR++EE R S++G
Sbjct: 46 LDKEKRSAEEQNLAEDLVKRGSNKGFNFMVDMIQALSNGKRSAEEQDLAEDLVTRGSNKG 105
Query: 74 KRASEEGKRASEEGKRASEEGKRASEEGKRASEEGKGVQLDIIKCRKCG 122
+ A GKR++EE A + KR S +G +D+I G
Sbjct: 106 FNFMVDMINALSNGKRSAEEQDLAEDLVKRGSNKGFNFMVDMINALSNG 154
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 19 RGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASE 78
L GKR++EE A + KRGS +G + + A GKR ++E A D R S
Sbjct: 114 NALSNGKRSAEEQDLAEDLVKRGSNKGFNFMVDMINALSNGKRSAEEQDLAEDLVTRRSN 173
Query: 79 EGK-------RASEEGKRASEEGKRASEEGKRASEEGKGVQLDIIKCRKCG 122
+G +A +GKR++E+ A + R S +G +D+I+ G
Sbjct: 174 KGFNFMVDMIQALSKGKRSAEDQDLAEDLVTRGSNKGFNFMVDMIQALSKG 224
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 39 KRGSKEGK--RALEEGKRASEEGKRGSKEGKRASDEGKRASEEGKRASEEGKRASEEGKR 96
KRGS G + L++ KR++EE KR S++G + +A GKR++EE
Sbjct: 34 KRGSNTGFNFKTLDKEKRSAEEQNLAEDLVKRGSNKGFNFMVDMIQALSNGKRSAEEQDL 93
Query: 97 ASEEGKRASEEGKGVQLDIIKCRKCG 122
A + R S +G +D+I G
Sbjct: 94 AEDLVTRGSNKGFNFMVDMINALSNG 119
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 19 RGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASE 78
L GKR++EE A + R S +G + + +A +GKR +++ A D R S
Sbjct: 149 NALSNGKRSAEEQDLAEDLVTRRSNKGFNFMVDMIQALSKGKRSAEDQDLAEDLVTRGSN 208
Query: 79 EGKRASEEGKRASEEGKRASEEGK 102
+G + +A +GKR++E+ K
Sbjct: 209 KGFNFMVDMIQALSKGKRSAEQEK 232
>sp|Q5GC92|MAXSB_BOMMX Maximins-S type B/C OS=Bombina maxima PE=1 SV=1
Length = 305
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 19 RGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASE 78
L GKR++EE A RGS +G + + A GKR ++E A D R S
Sbjct: 79 NALSNGKRSAEEQDLAEHLVTRGSNKGFNFMVDMINALSNGKRSAEEQDLAEDLVTRGSN 138
Query: 79 EGK-------RASEEGKRASEEGKRASEEGKRASEEGKGVQLDIIKCRKCG 122
+G +A +GKR++E+ A + R S +G +D+I+ G
Sbjct: 139 KGFNFMVDMIQALSKGKRSAEDQDLAEDLVTRGSNKGFNFMVDMIQALSNG 189
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 19 RGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASE 78
L GKR++EE A + RGS +G + + +A +GKR +++ A D R S
Sbjct: 114 NALSNGKRSAEEQDLAEDLVTRGSNKGFNFMVDMIQALSKGKRSAEDQDLAEDLVTRGSN 173
Query: 79 EGK-------RASEEGKRASEEGKRASEEGKRASEEGKGVQLDIIKCRKCG 122
+G +A GKR++EE A R S +G +D+I G
Sbjct: 174 KGFNFMVDMIQALSNGKRSAEEQDLAEHLVTRGSNKGFNFMVDMINALSNG 224
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 19 RGLKEGKRASEEGKRASEEGKRGSKEGK-------RALEEGKRASEEGKRGSKEGKRASD 71
+ L +GKR++E+ A + RGS +G +AL GKR++EE R S+
Sbjct: 149 QALSKGKRSAEDQDLAEDLVTRGSNKGFNFMVDMIQALSNGKRSAEEQDLAEHLVTRGSN 208
Query: 72 EGKRASEEGKRASEEGKRASEEGKRASEEGKRASEEGKGVQLDIIKCRKCG 122
+G + A GKR++EE + + R S +G +D+I G
Sbjct: 209 KGFNFMVDMINALSNGKRSAEEQDLSEDLVTRGSNKGFNFMVDMINALSNG 259
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 19 RGLKEGKRASEEGKRASEEGKRGSKEGKR-------ALEEGKRASEEGKRGSKEGKRASD 71
+ L GKR++EE A RGS +G AL GKR++EE R S+
Sbjct: 184 QALSNGKRSAEEQDLAEHLVTRGSNKGFNFMVDMINALSNGKRSAEEQDLSEDLVTRGSN 243
Query: 72 EGKRASEEGKRASEEGKRASEEGKRASEEGKRASEEGKGVQLDIIKCRKCG 122
+G + A GKR++EE + R S +G +D+I+ G
Sbjct: 244 KGFNFMVDMINALSNGKRSAEEQDLVEDLVTRRSNKGFNFMVDMIQALSKG 294
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 21 LKEGKRASEEGKRASEEGKRGSKEGKR-------ALEEGKRASEEGKRGSKEGKRASDEG 73
L + KR++EE A RGS +G AL GKR++EE R S++G
Sbjct: 46 LDKEKRSAEEQNLAEHLVTRGSNKGFNFMVDMINALSNGKRSAEEQDLAEHLVTRGSNKG 105
Query: 74 KRASEEGKRASEEGKRASEEGKRASEEGKRASEEGKGVQLDIIKCRKCG 122
+ A GKR++EE A + R S +G +D+I+ G
Sbjct: 106 FNFMVDMINALSNGKRSAEEQDLAEDLVTRGSNKGFNFMVDMIQALSKG 154
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 39 KRGSKEGK--RALEEGKRASEEGKRGSKEGKRASDEGKRASEEGKRASEEGKRASEEGKR 96
KRGS G + L++ KR++EE R S++G + A GKR++EE
Sbjct: 34 KRGSNTGFNFKTLDKEKRSAEEQNLAEHLVTRGSNKGFNFMVDMINALSNGKRSAEEQDL 93
Query: 97 ASEEGKRASEEGKGVQLDIIKCRKCG 122
A R S +G +D+I G
Sbjct: 94 AEHLVTRGSNKGFNFMVDMINALSNG 119
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 19 RGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASE 78
L GKR++EE + + RGS +G + + A GKR ++E D R S
Sbjct: 219 NALSNGKRSAEEQDLSEDLVTRGSNKGFNFMVDMINALSNGKRSAEEQDLVEDLVTRRSN 278
Query: 79 EGKRASEEGKRASEEGKRASEEGK 102
+G + +A +GKR++E+ K
Sbjct: 279 KGFNFMVDMIQALSKGKRSAEQEK 302
>sp|Q5GC91|MAXSD_BOMMX Maximins-S type D OS=Bombina maxima PE=1 SV=1
Length = 270
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 19 RGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASE 78
L GKR++EE A + RGS +G + + +A +GKR +++ A D R S
Sbjct: 79 NALSNGKRSAEEQDLAEDLVTRGSNKGFNFMVDMIQALSKGKRSAEDQDLAEDLVTRGSN 138
Query: 79 EGK-------RASEEGKRASEEGKRASEEGKRASEEGKGVQLDIIKCRKCG 122
+G +A GKR++EE A R S +G +D+I G
Sbjct: 139 KGFNFMVDMIQALSNGKRSAEEQDLAEHLVTRGSNKGFNFMVDMINALSNG 189
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 19 RGLKEGKRASEEGKRASEEGKRGSKEGK-------RALEEGKRASEEGKRGSKEGKRASD 71
+ L GKR++EE A RGS +G AL GKR++EE R S+
Sbjct: 149 QALSNGKRSAEEQDLAEHLVTRGSNKGFNFMVDMINALSNGKRSAEEQDLVEDLVTRRSN 208
Query: 72 EGKRASEEGKRASEEGKRASEEGKRASEEGKRASEEGKGVQLDIIKCRKCG 122
+G + +A +GKR++EE A + R S +G +D+I+ G
Sbjct: 209 KGFNFMVDMIQALSKGKRSAEEQDLAEDLVTRGSNKGFNFMVDMIQALSKG 259
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 19 RGLKEGKRASEEGKRASEEGKRGSKEGK-------RALEEGKRASEEGKRGSKEGKRASD 71
+ L +GKR++E+ A + RGS +G +AL GKR++EE R S+
Sbjct: 114 QALSKGKRSAEDQDLAEDLVTRGSNKGFNFMVDMIQALSNGKRSAEEQDLAEHLVTRGSN 173
Query: 72 EGKRASEEGKRASEEGKRASEEGKRASEEGKRASEEGKGVQLDIIKCRKCG 122
+G + A GKR++EE + R S +G +D+I+ G
Sbjct: 174 KGFNFMVDMINALSNGKRSAEEQDLVEDLVTRRSNKGFNFMVDMIQALSKG 224
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 21 LKEGKRASEEGKRASEEGKRGSKEGKR-------ALEEGKRASEEGKRGSKEGKRASDEG 73
L + KR++EE A RGS +G AL GKR++EE R S++G
Sbjct: 46 LDKEKRSAEEQNLAEHLVTRGSNKGFNFMVDMINALSNGKRSAEEQDLAEDLVTRGSNKG 105
Query: 74 KRASEEGKRASEEGKRASEEGKRASEEGKRASEEGKGVQLDIIKCRKCG 122
+ +A +GKR++E+ A + R S +G +D+I+ G
Sbjct: 106 FNFMVDMIQALSKGKRSAEDQDLAEDLVTRGSNKGFNFMVDMIQALSNG 154
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 39 KRGSKEGK--RALEEGKRASEEGKRGSKEGKRASDEGKRASEEGKRASEEGKRASEEGKR 96
KRGS G + L++ KR++EE R S++G + A GKR++EE
Sbjct: 34 KRGSNTGFNFKTLDKEKRSAEEQNLAEHLVTRGSNKGFNFMVDMINALSNGKRSAEEQDL 93
Query: 97 ASEEGKRASEEGKGVQLDIIKCRKCG 122
A + R S +G +D+I+ G
Sbjct: 94 AEDLVTRGSNKGFNFMVDMIQALSKG 119
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 19 RGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASE 78
L GKR++EE + R S +G + + +A +GKR ++E A D R S
Sbjct: 184 NALSNGKRSAEEQDLVEDLVTRRSNKGFNFMVDMIQALSKGKRSAEEQDLAEDLVTRGSN 243
Query: 79 EGKRASEEGKRASEEGKRASEEGK 102
+G + +A +GKR++E+ K
Sbjct: 244 KGFNFMVDMIQALSKGKRSAEQEK 267
>sp|Q5HJU7|PLS_STAAC Putative surface protein SACOL0050 OS=Staphylococcus aureus (strain
COL) GN=SACOL0050 PE=4 SV=1
Length = 1548
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 22 KEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASEEGK 81
+E +A+EE + E K ++E +A EE +A+EE + + K ++E A E K
Sbjct: 146 EETDKATEEAPKTEETDKATTEEAPKA-EETDKATEEAPKTEETDKATTEEAPAAEETSK 204
Query: 82 RASEEGKRASEEGKRASEEG 101
A+EE +A E K A+EE
Sbjct: 205 AATEEAPKAEETSKAATEEA 224
Score = 40.0 bits (92), Expect = 0.013, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 2 SKESSEVPGTITPKEGKRGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKR 61
++E ++ T +E + K +EE +A EE + ++E + E K +EE +
Sbjct: 113 TEEKADTTEQATTEEAPKAEGTDKVETEEAPKA-EETDKATEEAPKTEETDKATTEEAPK 171
Query: 62 GSKEGKRASDEGKRASEEGKRASEEGKRASEEGKRASEEGKRASEEGKG 110
++E +A++E + E K +EE A E K A+EE +A E K
Sbjct: 172 -AEETDKATEEAPKTEETDKATTEEAPAAEETSKAATEEAPKAEETSKA 219
Score = 36.2 bits (82), Expect = 0.18, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 24/128 (18%)
Query: 3 KESSEVPGTITPKEGKRGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRG 62
K + E P T +E + E +EE +A+EE + + K EE A E K
Sbjct: 150 KATEEAPKT---EETDKATTEEAPKAEETDKATEEAPKTEETDKATTEEAPAAEETSKAA 206
Query: 63 SKEGKRASDEGKRASEEG---------------------KRASEEGKRASEEGKRASEEG 101
++E +A + K A+EE K +EE +A E K A+E+
Sbjct: 207 TEEAPKAEETSKAATEEAPKAEETEKTATEEAPKTEETDKVETEEAPKAEETSKAATEKA 266
Query: 102 KRASEEGK 109
+A E K
Sbjct: 267 PKAEETNK 274
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 51/108 (47%)
Query: 2 SKESSEVPGTITPKEGKRGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKR 61
++E+ + T E +E +A+ E +EE + ++E + E K +EE
Sbjct: 139 TEEAPKAEETDKATEEAPKTEETDKATTEEAPKAEETDKATEEAPKTEETDKATTEEAPA 198
Query: 62 GSKEGKRASDEGKRASEEGKRASEEGKRASEEGKRASEEGKRASEEGK 109
+ K A++E +A E K A+EE +A E K A+EE + E K
Sbjct: 199 AEETSKAATEEAPKAEETSKAATEEAPKAEETEKTATEEAPKTEETDK 246
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 47/95 (49%)
Query: 18 KRGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRAS 77
K +E +A E K A+EE + + K A EE + E K ++E +A + K A+
Sbjct: 204 KAATEEAPKAEETSKAATEEAPKAEETEKTATEEAPKTEETDKVETEEAPKAEETSKAAT 263
Query: 78 EEGKRASEEGKRASEEGKRASEEGKRASEEGKGVQ 112
E+ +A E K +EE A E K A+EE V+
Sbjct: 264 EKAPKAEETNKVETEEAPAAEETNKAATEETPAVE 298
>sp|Q6ZQQ6|WDR87_HUMAN WD repeat-containing protein 87 OS=Homo sapiens GN=WDR87 PE=1 SV=3
Length = 2873
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 25 KRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASEEGKRAS 84
++ +EE + EE K KRA E KRA EE K +E K A +E + A EE K A
Sbjct: 1559 QQVTEEQRHIQEEHKWARIHRKRARAEKKRAQEERKLAQEEEKLAQEERQLAQEERKLAQ 1618
Query: 85 EEGKRASEEGKRASEEGKRASEE 107
K ++ + A EGK A +E
Sbjct: 1619 AYVKITQDDREMAQAEGKFAQKE 1641
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 25 KRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASEEGKRAS 84
KRA E KRA EE K +E K A EE + A EE K K D+ + A EGK A
Sbjct: 1580 KRARAEKKRAQEERKLAQEEEKLAQEERQLAQEERKLAQAYVKITQDDREMAQAEGKFAQ 1639
Query: 85 EE------GKRASEEGKRASEEGKRASEEGKGV 111
+E G++ S+E ++ +++ K+ +++ + V
Sbjct: 1640 KEETLAQRGEKLSQEAEKLAQKRKKLAKKWEKV 1672
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 32/65 (49%)
Query: 50 EEGKRASEEGKRGSKEGKRASDEGKRASEEGKRASEEGKRASEEGKRASEEGKRASEEGK 109
EE + EE K KRA E KRA EE K A EE K A EE + A EE K A K
Sbjct: 1563 EEQRHIQEEHKWARIHRKRARAEKKRAQEERKLAQEEEKLAQEERQLAQEERKLAQAYVK 1622
Query: 110 GVQLD 114
Q D
Sbjct: 1623 ITQDD 1627
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%)
Query: 32 KRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASEEGKRASEEGKRAS 91
++ +EE + +E K A KRA E KR +E K A +E K A EE + A EE K A
Sbjct: 1559 QQVTEEQRHIQEEHKWARIHRKRARAEKKRAQEERKLAQEEEKLAQEERQLAQEERKLAQ 1618
Query: 92 EEGKRASEEGKRASEEGKGVQ 112
K ++ + A EGK Q
Sbjct: 1619 AYVKITQDDREMAQAEGKFAQ 1639
>sp|P80544|PLS_STAAU Surface protein OS=Staphylococcus aureus GN=pls PE=1 SV=2
Length = 1637
Score = 38.1 bits (87), Expect = 0.052, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 28 SEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASEEGKRASEEG 87
+EE +A K ++E +A E K +EE + ++E +A++E + E K +EE
Sbjct: 125 TEEAPKAEGTDKVETEEAPKAEETDKATTEEAPK-AEETDKATEEAPKTEETDKATTEEA 183
Query: 88 KRASEEGKRASEEGKRASEEGKG 110
A E K A+EE +A E K
Sbjct: 184 PAAEETSKAATEEAPKAEETSKA 206
Score = 36.2 bits (82), Expect = 0.21, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 22 KEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEG-------- 73
+E +A+EE + E K ++E A E K A+EE + + K A++E
Sbjct: 160 EETDKATEEAPKTEETDKATTEEAPAAEETSKAATEEAPKAEETSKAATEEAPKAEETEK 219
Query: 74 ------KRASEEGKRASEEGKRASEEGKRASEEGKRASEEGK 109
+ E K +EE +A E K A+E+ +A E K
Sbjct: 220 TATEEAPKTEETDKVETEEAPKAEETSKAATEKAPKAEETNK 261
Score = 35.8 bits (81), Expect = 0.28, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 45/94 (47%)
Query: 15 KEGKRGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGK 74
+E + +E + E K +EE + K A EE +A E K ++E +A + K
Sbjct: 160 EETDKATEEAPKTEETDKATTEEAPAAEETSKAATEEAPKAEETSKAATEEAPKAEETEK 219
Query: 75 RASEEGKRASEEGKRASEEGKRASEEGKRASEEG 108
A+EE + E K +EE +A E K A+E+
Sbjct: 220 TATEEAPKTEETDKVETEEAPKAEETSKAATEKA 253
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 2 SKESSEVPGT--ITPKEGKRGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEG 59
++E+ + GT + +E + + K +EE +A EE + ++E + E K +EE
Sbjct: 125 TEEAPKAEGTDKVETEEAPKAEETDKATTEEAPKA-EETDKATEEAPKTEETDKATTEEA 183
Query: 60 KRGSKEGKRASDEGKRASEEGKRASEEGKRASEEGKRASEEGKRASEEGK 109
+ K A++E +A E K A+EE +A E K A+EE + E K
Sbjct: 184 PAAEETSKAATEEAPKAEETSKAATEEAPKAEETEKTATEEAPKTEETDK 233
Score = 32.7 bits (73), Expect = 2.3, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 47/95 (49%)
Query: 18 KRGLKEGKRASEEGKRASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRAS 77
K +E +A E K A+EE + + K A EE + E K ++E +A + K A+
Sbjct: 191 KAATEEAPKAEETSKAATEEAPKAEETEKTATEEAPKTEETDKVETEEAPKAEETSKAAT 250
Query: 78 EEGKRASEEGKRASEEGKRASEEGKRASEEGKGVQ 112
E+ +A E K +EE A E K A+EE V+
Sbjct: 251 EKAPKAEETNKVETEEAPAAEETNKAATEETPAVE 285
>sp|A4WEY3|IF2_ENT38 Translation initiation factor IF-2 OS=Enterobacter sp. (strain 638)
GN=infB PE=3 SV=1
Length = 898
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 21 LKEGKRASEEGKR-ASEEGKRGSKEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASEE 79
LK + A+E+ KR A+++ KR + E + ++ E K E R +E A+E
Sbjct: 131 LKAEREAAEKAKRDANDKAKRDAAEKDKV--SNQQTDEMTKTAQTEKARRENE---AAEL 185
Query: 80 GKRASEEGKRASEE-GKRASEEGKRASEEGKGV 111
++A EE +R EE +R +EE +R +EE GV
Sbjct: 186 KRKAEEEARRKLEEDARRVAEEARRMAEENAGV 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.125 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,314,539
Number of Sequences: 539616
Number of extensions: 3433364
Number of successful extensions: 27354
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 984
Number of HSP's that attempted gapping in prelim test: 18137
Number of HSP's gapped (non-prelim): 5776
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 59 (27.3 bits)