Query psy16212
Match_columns 233
No_of_seqs 8 out of 10
Neff 1.6
Searched_HMMs 29240
Date Fri Aug 16 23:42:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rrb_A RAF-1 RBD, RAF proto-on 57.6 2.4 8.4E-05 33.2 0.3 10 217-226 23-32 (107)
2 2l05_A Serine/threonine-protei 57.5 2.3 7.9E-05 32.7 0.1 10 217-226 22-31 (95)
3 3ny5_A Serine/threonine-protei 49.1 3.8 0.00013 31.5 0.1 10 217-226 18-27 (96)
4 1qzp_A Dematin; villin headpie 19.3 30 0.001 24.5 0.6 21 122-142 22-42 (68)
5 1yu8_X Villin; alpha helix, 3- 16.7 33 0.0011 24.4 0.3 21 122-142 21-41 (67)
6 1zo0_A ODC-AZ, ornithine decar 16.7 43 0.0015 26.4 1.0 44 130-173 60-115 (126)
7 1ufz_A Hypothetical protein BA 16.3 1.5E+02 0.0052 22.1 3.8 44 123-191 27-71 (83)
8 2qif_A Copper chaperone COPZ; 15.9 1.1E+02 0.0038 16.8 2.4 20 168-187 50-69 (69)
9 3onr_A Protein transport prote 15.7 70 0.0024 23.1 1.8 24 144-168 48-71 (72)
10 2k6m_S Supervillin; SVHP, HP, 14.2 37 0.0013 24.1 -0.0 23 120-142 19-41 (67)
No 1
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=57.55 E-value=2.4 Score=33.18 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=8.7
Q ss_pred cccccccchh
Q psy16212 217 YYLPFQQHTC 226 (233)
Q Consensus 217 ~~~~~~~~~~ 226 (233)
-||||||||-
T Consensus 23 ~hLPNqQrT~ 32 (107)
T 1rrb_A 23 VFLPNKQRTV 32 (107)
T ss_dssp EECTTTCCEE
T ss_pred EECCCCCeEE
Confidence 5999999984
No 2
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=57.47 E-value=2.3 Score=32.71 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=8.6
Q ss_pred cccccccchh
Q psy16212 217 YYLPFQQHTC 226 (233)
Q Consensus 217 ~~~~~~~~~~ 226 (233)
-||||||||-
T Consensus 22 vhLPNqQrT~ 31 (95)
T 2l05_A 22 VFLPNKQRTV 31 (95)
T ss_dssp EEETTTEEEE
T ss_pred EECCCCCeEE
Confidence 4899999984
No 3
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=49.14 E-value=3.8 Score=31.53 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=8.5
Q ss_pred cccccccchh
Q psy16212 217 YYLPFQQHTC 226 (233)
Q Consensus 217 ~~~~~~~~~~ 226 (233)
-||||||+|-
T Consensus 18 vhLPNqQrT~ 27 (96)
T 3ny5_A 18 VFLPNKQRTV 27 (96)
T ss_dssp EEETTTEEEE
T ss_pred EECCCCceEE
Confidence 4899999984
No 4
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=19.28 E-value=30 Score=24.46 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=17.6
Q ss_pred hhhHHHhHHHhhhhHHHHHHH
Q psy16212 122 GEEVTQTRLESYLSALEFIEA 142 (233)
Q Consensus 122 ~~ev~q~r~e~~~~~~~~~~~ 142 (233)
-+.|..+++|.|||.-||.+.
T Consensus 22 P~gVD~~~lE~yLsdedF~~v 42 (68)
T 1qzp_A 22 PPGVDRMRLERHLSAEDFSRV 42 (68)
T ss_dssp CSSCCGGGCGGGBCHHHHHHH
T ss_pred CCCCCchHHHhhCCHHHHHHH
Confidence 356788999999999999764
No 5
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=16.75 E-value=33 Score=24.42 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=17.7
Q ss_pred hhhHHHhHHHhhhhHHHHHHH
Q psy16212 122 GEEVTQTRLESYLSALEFIEA 142 (233)
Q Consensus 122 ~~ev~q~r~e~~~~~~~~~~~ 142 (233)
-+.|..+++|.|||.-||.+.
T Consensus 21 P~gVD~~~lE~yLsdedF~~v 41 (67)
T 1yu8_X 21 PRGVDPSAKENHLSDEDFKAV 41 (67)
T ss_dssp CTTCCTTCGGGGSCHHHHHHH
T ss_pred CcccChHHHHhcCCHHHHHHH
Confidence 356788999999999999864
No 6
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=16.67 E-value=43 Score=26.36 Aligned_cols=44 Identities=39% Similarity=0.563 Sum_probs=33.4
Q ss_pred HHhhhhHHHHHHHHHhhc-------cc-----ccceeeeeecceeeccCCCcchhH
Q psy16212 130 LESYLSALEFIEAQLDRM-------KH-----TSYRTTLEVGFESIHSGQSLVPES 173 (233)
Q Consensus 130 ~e~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 173 (233)
-|+.++-|||-|.+|.-- |. +--||-.-+|||-++.|..++|.+
T Consensus 60 Ke~fv~LLEfAEe~L~~~~V~v~f~K~r~dr~~l~rtF~f~GFe~v~P~hp~~P~~ 115 (126)
T 1zo0_A 60 KDSFAALLEFAEEQLRADHVFICFPKNREDRAALLRTFSFLGFEIVRPGHPLVPKR 115 (126)
T ss_dssp SHHHHHHHHHHHHHHCCCCEEEEECCCSSCHHHHHHHHTTTCCEEECCCCSSCSSC
T ss_pred hHHHHHHHHHHHHhcCCCEEEEEEecCCcchHhhheeeeecceEEeCCCCCCCCCC
Confidence 378899999999998521 11 223566679999999999999964
No 7
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=16.30 E-value=1.5e+02 Score=22.06 Aligned_cols=44 Identities=32% Similarity=0.572 Sum_probs=28.6
Q ss_pred hhHHHhHHHhhhhHHHHHHHHHhhcccccceeeeeecceeeccCCCcchh-HHHhhhhhhhhhhhhccce
Q psy16212 123 EEVTQTRLESYLSALEFIEAQLDRMKHTSYRTTLEVGFESIHSGQSLVPE-SIQKSLMDIKYDVEKKLCS 191 (233)
Q Consensus 123 ~ev~q~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 191 (233)
-++.||||.+=|..+.-| -|.+ ||+ .+-...|.-+||++|-|--
T Consensus 27 s~~d~arL~SCLd~iR~V------------------------lGds-V~e~~Lv~ailk~dfD~ekALd~ 71 (83)
T 1ufz_A 27 SEIDQARLYSCLDHMREV------------------------LGDA-VPDDILTEAILKHKFDVQKALSV 71 (83)
T ss_dssp CHHHHHHHHHHHHHHHHH------------------------TTTT-SCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH------------------------Hccc-CCHHHHHHHHHHhcCCHHHHHHH
Confidence 457888887765544322 1444 444 4566788999999998753
No 8
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=15.94 E-value=1.1e+02 Score=16.83 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=13.8
Q ss_pred CcchhHHHhhhhhhhhhhhh
Q psy16212 168 SLVPESIQKSLMDIKYDVEK 187 (233)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~ 187 (233)
.+-++.|.+.+-++-|+++|
T Consensus 50 ~~~~~~i~~~i~~~G~~~~~ 69 (69)
T 2qif_A 50 KVSVKDIADAIEDQGYDVAK 69 (69)
T ss_dssp TCCHHHHHHHHHHTTCEECC
T ss_pred CCCHHHHHHHHHHcCCCccC
Confidence 34567777777778887654
No 9
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=15.73 E-value=70 Score=23.12 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=16.9
Q ss_pred HhhcccccceeeeeecceeeccCCC
Q psy16212 144 LDRMKHTSYRTTLEVGFESIHSGQS 168 (233)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (233)
++.=+-+.|+.+|.|||.- +.+|+
T Consensus 48 v~dgkv~~yqv~lKV~F~l-e~~~~ 71 (72)
T 3onr_A 48 VDSAGKITYRIKLEVSFKM-RPSQP 71 (72)
T ss_dssp ECTTCCEEEEEEEEEEEEC-CTTSC
T ss_pred EeCCcEEEEEEEEEEEEEE-cCCCC
Confidence 4445678899999999974 33443
No 10
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=14.16 E-value=37 Score=24.10 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=18.4
Q ss_pred cchhhHHHhHHHhhhhHHHHHHH
Q psy16212 120 KCGEEVTQTRLESYLSALEFIEA 142 (233)
Q Consensus 120 ~~~~ev~q~r~e~~~~~~~~~~~ 142 (233)
..-+.|..+++|.|||.-||.+.
T Consensus 19 ~lP~gVD~~~lE~yLsdedF~~v 41 (67)
T 2k6m_S 19 PLPEGVDPLKLEIYLTDEDFEFA 41 (67)
T ss_dssp CCCSSSBTTBCGGGSCHHHHHHH
T ss_pred CCCCCCCchHHHhhCCHHHHHHH
Confidence 33466788899999999999763
Done!