Query psy16212
Match_columns 233
No_of_seqs 8 out of 10
Neff 1.6
Searched_HMMs 13730
Date Fri Aug 16 23:42:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16212.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16212hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jn6a1 a.4.1.19 (A:1-89) Unch 34.3 1.6 0.00012 28.7 -2.0 37 182-218 5-41 (89)
2 d1ufza_ a.5.9.1 (A:) HBS1-like 20.4 51 0.0037 23.0 3.8 27 166-192 46-72 (83)
3 d1yu5x1 a.14.1.1 (X:10-76) Vil 16.0 17 0.0012 24.4 0.3 21 122-142 21-41 (67)
4 d1qzpa_ a.14.1.1 (A:) Dematin 14.6 22 0.0016 23.9 0.6 20 123-142 23-42 (68)
5 d1sb6a_ d.58.17.1 (A:) Copper 14.4 61 0.0044 19.4 2.7 60 111-186 5-64 (64)
6 d1jzua_ b.60.1.1 (A:) Lipocali 13.1 30 0.0022 22.3 0.9 24 204-227 130-153 (157)
7 d2cc6a1 d.230.2.1 (A:2-65) Fla 12.4 38 0.0028 22.3 1.3 19 143-161 44-62 (64)
8 d1lmja2 g.3.11.1 (A:47-88) Fib 12.2 30 0.0022 20.3 0.7 14 214-227 29-42 (42)
9 d1ivsa1 a.2.7.3 (A:797-862) Va 11.4 95 0.0069 19.0 3.1 24 124-147 42-65 (66)
10 d2azeb1 e.63.1.2 (B:201-301) T 11.4 54 0.0039 22.7 2.0 21 129-149 5-25 (101)
No 1
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=34.25 E-value=1.6 Score=28.74 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=31.8
Q ss_pred hhhhhhccceeeecccccCcccchhhhhhccCCcccc
Q psy16212 182 KYDVEKKLCSIRMSMKSSGLKEKKLVETYGIRPSGYY 218 (233)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (233)
+|+.|-|+--|++.+...|+.-..+.+.|||.|+-.|
T Consensus 5 ~Ys~EfK~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~ 41 (89)
T d2jn6a1 5 TYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLK 41 (89)
T ss_dssp CCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHCCCHHHHH
Confidence 5888989988999888789999999999999887554
No 2
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.37 E-value=51 Score=23.02 Aligned_cols=27 Identities=22% Similarity=0.555 Sum_probs=19.9
Q ss_pred CCCcchhHHHhhhhhhhhhhhhcccee
Q psy16212 166 GQSLVPESIQKSLMDIKYDVEKKLCSI 192 (233)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (233)
|.++--+.+-+..|..+|||+|-|-.|
T Consensus 46 GDsvpe~~lv~avlk~dydvekALd~v 72 (83)
T d1ufza_ 46 GDAVPDDILTEAILKHKFDVQKALSVV 72 (83)
T ss_dssp TTTSCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cccCCHHHHHHHHHHccCCHHHHHHHH
Confidence 555444557788899999999987543
No 3
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=15.95 E-value=17 Score=24.39 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=17.8
Q ss_pred hhhHHHhHHHhhhhHHHHHHH
Q psy16212 122 GEEVTQTRLESYLSALEFIEA 142 (233)
Q Consensus 122 ~~ev~q~r~e~~~~~~~~~~~ 142 (233)
-+-|..+++|.|||.-||.+.
T Consensus 21 P~gVD~~~lE~yLsd~dF~~v 41 (67)
T d1yu5x1 21 PRGVDPSRKENHLSDEDFKAV 41 (67)
T ss_dssp CTTCCTTCGGGGSCHHHHHHH
T ss_pred CCCCChHHHHhhCCHHHHHHH
Confidence 356888999999999999864
No 4
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.64 E-value=22 Score=23.93 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=16.9
Q ss_pred hhHHHhHHHhhhhHHHHHHH
Q psy16212 123 EEVTQTRLESYLSALEFIEA 142 (233)
Q Consensus 123 ~ev~q~r~e~~~~~~~~~~~ 142 (233)
+.|..+++|.|||.-+|.+.
T Consensus 23 ~gVD~~~lE~yLsd~dF~~v 42 (68)
T d1qzpa_ 23 PGVDRMRLERHLSAEDFSRV 42 (68)
T ss_dssp SSCCGGGCGGGBCHHHHHHH
T ss_pred CCCChHHHHhhCCHHHHHHH
Confidence 45778899999999999764
No 5
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}
Probab=14.35 E-value=61 Score=19.44 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=34.3
Q ss_pred eeEeeeeeecchhhHHHhHHHhhhhHHHHHHHHHhhcccccceeeeeecceeeccCCCcchhHHHhhhhhhhhhhh
Q psy16212 111 VQLDIIKCRKCGEEVTQTRLESYLSALEFIEAQLDRMKHTSYRTTLEVGFESIHSGQSLVPESIQKSLMDIKYDVE 186 (233)
Q Consensus 111 irid~iK~R~~~~ev~q~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (233)
+.+.+..|-.|-..++++ |.+++.+. + ....|.-+.-.+. ..+-|+.|++.|-+.-|++|
T Consensus 5 l~V~gM~C~~C~~~Ie~~-----l~~~~gv~-------~--v~v~~~~~~v~v~--~~~~~~~i~~~i~~~GY~ve 64 (64)
T d1sb6a_ 5 LTVPTIACEACAEAVTKA-----VQNEDAQA-------T--VQVDLTSKKVTIT--SALGEEQLRTAIASAGHEVE 64 (64)
T ss_dssp EECTTTTSSSCTHHHHHH-----HHHHCTTC-------E--EEEETTTTEEEEE--SSSCHHHHHHHHHHHCCCCC
T ss_pred EEECCccchhHHHHHHHH-----HhcCCCee-------E--EEccCCCCEEEEc--cCCCHHHHHHHHHHcCCCCC
Confidence 566778888888766543 44443321 1 1111111111121 23678999999999999886
No 6
>d1jzua_ b.60.1.1 (A:) Lipocalin q83 {Common quail (Coturnix coturnix) [TaxId: 9091]}
Probab=13.08 E-value=30 Score=22.34 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=19.5
Q ss_pred chhhhhhccCCcccccccccchhh
Q psy16212 204 KKLVETYGIRPSGYYLPFQQHTCL 227 (233)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~ 227 (233)
+++++.+||.++-.+.+-|+-+|.
T Consensus 130 ~~~~~~~G~~~~~i~~~~q~~~C~ 153 (157)
T d1jzua_ 130 RKLAGERNYTDEMVAMLPRQEECT 153 (157)
T ss_dssp HHHHHHHTCSGGGCEECCCSSSSC
T ss_pred HHHHHHcCCCHHHEEECCCCCccC
Confidence 467888999999888777877895
No 7
>d2cc6a1 d.230.2.1 (A:2-65) Flavin-binding protein dodecin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=12.41 E-value=38 Score=22.28 Aligned_cols=19 Identities=26% Similarity=0.670 Sum_probs=15.3
Q ss_pred HHhhcccccceeeeeecce
Q psy16212 143 QLDRMKHTSYRTTLEVGFE 161 (233)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~ 161 (233)
.++.=+.+.|+.+|.|||.
T Consensus 44 ~v~dgkv~~yqv~lKv~F~ 62 (64)
T d2cc6a1 44 EIGAVEERTYQTEVQVAFE 62 (64)
T ss_dssp ECTTSSSCEEEEEEEEEEE
T ss_pred EEeCCcEEEEEEEEEEEEE
Confidence 3455677899999999995
No 8
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.24 E-value=30 Score=20.35 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=11.5
Q ss_pred Ccccccccccchhh
Q psy16212 214 PSGYYLPFQQHTCL 227 (233)
Q Consensus 214 ~~~~~~~~~~~~~~ 227 (233)
|.||.|--.+++|+
T Consensus 29 ~~Gy~l~~d~~~Cv 42 (42)
T d1lmja2 29 PPGHQLSPNISACI 42 (42)
T ss_dssp CTTSCCCSSSCCCC
T ss_pred CCCCeECcCCCccC
Confidence 67888888888885
No 9
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=11.45 E-value=95 Score=18.99 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=18.0
Q ss_pred hHHHhHHHhhhhHHHHHHHHHhhc
Q psy16212 124 EVTQTRLESYLSALEFIEAQLDRM 147 (233)
Q Consensus 124 ev~q~r~e~~~~~~~~~~~~~~~~ 147 (233)
+.++.+++.+...++.|+.+|..|
T Consensus 42 ~~~k~kl~~~~~~~~~l~~~l~~L 65 (66)
T d1ivsa1 42 EAEEARLKENLEQAERIREALSQI 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677788888888888888765
No 10
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.43 E-value=54 Score=22.72 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=17.1
Q ss_pred HHHhhhhHHHHHHHHHhhccc
Q psy16212 129 RLESYLSALEFIEAQLDRMKH 149 (233)
Q Consensus 129 r~e~~~~~~~~~~~~~~~~~~ 149 (233)
.|.++|+.|+.-|..||++.+
T Consensus 5 ~L~~El~~L~~~E~~LD~li~ 25 (101)
T d2azeb1 5 GLTQDLRQLQESEQQLDHLMN 25 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999998753
Done!