RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16212
         (233 letters)



>d2igsa1 d.2.1.11 (A:4-215) Hypothetical protein PA2222 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 212

 Score = 29.3 bits (65), Expect = 0.29
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 110 GVQLDIIKCRKCGEEVTQTRLESYLSALEFIEAQ-----LDRMKHTSYRTTLEVGFESIH 164
           G ++   K R C  E+    L S    L+ I+A+     LDR K +      +VGF +  
Sbjct: 75  GFRMVNEKERVCNVEILPL-LTSMAQNLDRIKARFGSGYLDRFKGSPNVYPTDVGFSTDA 133

Query: 165 SG 166
           SG
Sbjct: 134 SG 135


>d1zo0a1 d.108.1.7 (A:94-219) Ornithine decarboxylase antizyme {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 126

 Score = 27.4 bits (61), Expect = 0.72
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 131 ESYLSALEFIEAQL-----------DRMKHTSY-RTTLEVGFESIHSGQSLVPESIQKSL 178
           +S+ + LEF E QL           +R    +  RT   +GFE +  G  LVP+      
Sbjct: 61  DSFAALLEFAEEQLRADHVFICFPKNREDRAALLRTFSFLGFEIVRPGHPLVPKRPDACF 120

Query: 179 MDIKYDVE 186
           M   Y +E
Sbjct: 121 MV--YTLE 126


>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId:
           7130]}
          Length = 166

 Score = 26.4 bits (58), Expect = 2.4
 Identities = 7/58 (12%), Positives = 23/58 (39%)

Query: 43  KEGKRALEEGKRASEEGKRGSKEGKRASDEGKRASEEGKRASEEGKRASEEGKRASEE 100
                  +    +S      S    +A +  ++A +  ++ +EE ++A  + ++ +  
Sbjct: 46  GSDSVLQQLSAFSSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANA 103


>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 67

 Score = 24.7 bits (54), Expect = 3.1
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 123 EEVTQTRLESYLSALEFIEA 142
             V  +R E++LS  +F   
Sbjct: 22  RGVDPSRKENHLSDEDFKAV 41


>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 68

 Score = 24.7 bits (54), Expect = 3.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 123 EEVTQTRLESYLSALEFIEA 142
             V + RLE +LSA +F   
Sbjct: 23  PGVDRMRLERHLSAEDFSRV 42


>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 50

 Score = 24.3 bits (53), Expect = 3.4
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 5/25 (20%)

Query: 110 GVQLDIIKCRKCG-EEVT----QTR 129
           G Q D+  C KC  +  T    QTR
Sbjct: 4   GTQTDLFTCGKCKKKNCTYTQVQTR 28


>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId:
           562]}
          Length = 477

 Score = 26.1 bits (57), Expect = 4.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 123 EEVTQTRLESYLSALEFIEAQLDRMKHTSYRTTLEVGF 160
           E      L+  + A++ + A+ DR+     RT  E  F
Sbjct: 439 EGAISEHLQIGIRAIDLLRAEGDRLHSRKLRTFNEPPF 476


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.125    0.332 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 780,021
Number of extensions: 35151
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 14
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.4 bits)