BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16214
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 122/433 (28%), Positives = 197/433 (45%), Gaps = 18/433 (4%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAK 62
EKH E G Q + AL + A+ P N AYY RA ++ +G AL D
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY-RRATVFLAMGKSKAALPDLT 84
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
+ L F+ +++ + G A + K + + NP+ +E +A + K+
Sbjct: 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSD 141
Query: 123 E------GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
E A AF + DY A+ +LD+ ++ V + ++AEC ++A I++
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA--ISD 199
Query: 177 SILATDKQNPDA-VFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXX 234
A+ +N + F + LYY +L+++ + LKL DH + YK+
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259
Query: 235 XXXXGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294
E G+ +A Y +K + + K K EAI C+
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319
Query: 295 LALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM-DNSRENHNFLEEAKRLLKRS 353
L+ +P+ + AL R + + Y E + D E + +N ++ LE+A+RLLK+S
Sbjct: 320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379
Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
+ +DYYKILGV +NA +I KAYRK AL HPD N + +K EK F ++ A +
Sbjct: 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK--AEKKFIDIAAAKEV 437
Query: 414 LSDPTKRSRYDRG 426
LSDP R ++D G
Sbjct: 438 LSDPEMRKKFDDG 450
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 122/433 (28%), Positives = 195/433 (45%), Gaps = 18/433 (4%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAK 62
EKH E G Q + AL + A+ P N AYY RA ++ G AL D
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY-RRATVFLAXGKSKAALPDLT 84
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
+ L F+ +++ + G A + K + + NP+ +E +A + K+
Sbjct: 85 KVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSD 141
Query: 123 EG------ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
E A AF + DY A+ +LD+ ++ V + ++AEC ++A I++
Sbjct: 142 EXQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA--ISD 199
Query: 177 SILATDKQNPDA-VFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXX 234
A+ +N + F + LYY +L+++ + LKL DH + YK+
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259
Query: 235 XXXXGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294
E G+ +A Y K + + K K EAI C+
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319
Query: 295 LALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM-DNSRENHNFLEEAKRLLKRS 353
L+ +P+ + AL R + + Y E + D E + +N ++ LE+A+RLLK+S
Sbjct: 320 EVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379
Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
+ +DYYKILGV +NA +I KAYRK AL HPD N + +K EK F ++ A +
Sbjct: 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK--AEKKFIDIAAAKEV 437
Query: 414 LSDPTKRSRYDRG 426
LSDP R ++D G
Sbjct: 438 LSDPEXRKKFDDG 450
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 7/80 (8%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
KDYY+ LG+ + AS ++IK+AYR++AL +HPD++ +K FKE+ EAY +LS
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEK------FKEIAEAYDVLS 56
Query: 416 DPTKRSRYDR-GEDIMEDSG 434
DP KR +DR GE+ ++ SG
Sbjct: 57 DPRKREIFDRYGEEGLKGSG 76
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
AE+ K N +K K Y A+K YS+AI + P+ A YYGNR+ Y+ Y YAL+DA
Sbjct: 21 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATR 80
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDP 103
A+ LD ++ KG R+ N+ALG A + + + ++ P
Sbjct: 81 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 120
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
N+ F A + A Y++A++++ N + NR+ + Y A+ D T A+E
Sbjct: 28 ANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALNDATRAIE 83
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
D Y+K RR ALG+++ + D E + K+
Sbjct: 84 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 118
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
AE+ K N +K K Y A+K YS+AI + P+ A YYGNR+ Y+ Y YAL DA
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDP 103
A+ LD ++ KG R+ N+ALG A + + + ++ P
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 112
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
N+ F A + A Y++A++++ N + NR+ + Y A+ D T A+E
Sbjct: 20 ANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIE 75
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
D Y+K RR ALG+++ + D E + K+
Sbjct: 76 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
S + +YY++LGV +AS +DIKKAYRK AL HPD++ + K E EK FK V EAY
Sbjct: 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPD----NKEEAEKKFKLVSEAYE 61
Query: 413 ILSDPTKRSRYDR 425
+LSD KRS YDR
Sbjct: 62 VLSDSKKRSLYDR 74
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
YY+IL V ++AS+DDIKKAYR++AL HPD++ + K EK FKEV EAY +LSD
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPD----NKEFAEKKFKEVAEAYEVLSDK 59
Query: 418 TKRSRYDR-GEDIMEDSGMG 436
KR YDR G + + +G G
Sbjct: 60 HKREIYDRYGREGLTGTGTG 79
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
AE+ K N +K K Y A+K YS+AI + P+ A YYGNR+ Y+ Y YAL DA
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDP 103
A+ LD ++ KG R+ N+ALG A + + + ++ P
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 105
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK 299
N+ F A + A Y++A++++ N + NR+ + Y A+ D T A+E
Sbjct: 14 NDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 300 DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
D Y+K RR ALG+++ + D E + K+
Sbjct: 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 149/362 (41%), Gaps = 18/362 (4%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAK 62
EKH E G Q + AL + A+ P N AYY RA ++ G AL D
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY-RRATVFLAXGKSKAALPDLT 61
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
++L F+ +++ + G A + K + + NP+ +E +A + K
Sbjct: 62 KVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKAD 118
Query: 123 EG------ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
E A AF+ DY A+ +LD+ ++ V + ++AEC + E ++ +
Sbjct: 119 EXQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI---KEGEPRKAIS 175
Query: 177 SILATDKQNPD--AVFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXX 233
+ A K D F + LYY +L+++ + LKL DH + YK+
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235
Query: 234 XXXXXGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
E G+ +A Y K + + K K EAI C
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295
Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM-DNSRENHNFLEEAKRLLKR 352
+ L+ +P+ + AL R + + Y E + D E + +N ++ LE+A+RLLK+
Sbjct: 296 SEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355
Query: 353 SE 354
S+
Sbjct: 356 SQ 357
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 10/71 (14%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRH--TNATQAQKLEQEKLFKEVGEAYGIL 414
DYY+ILGV++ AS +D+KKAYR+ AL HPD++ AT+A FK +G AY +L
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEA--------FKAIGTAYAVL 59
Query: 415 SDPTKRSRYDR 425
S+P KR +YD+
Sbjct: 60 SNPEKRKQYDQ 70
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
DYY++L V + ASS+ IKKAYRK AL HPD++ K E E+ FK+V EAY +LSD
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE----NKEEAERRFKQVAEAYEVLSD 65
Query: 417 PTKRSRYDR 425
KR YDR
Sbjct: 66 AKKRDIYDR 74
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 12/98 (12%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPT 418
Y +LG+ KNA+SDDIKK+YRK AL +HPD++ + +A FKE+ A+ IL+D T
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAA-----DKFKEINNAHAILTDAT 74
Query: 419 KRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPG 456
KR+ YD+ G G A F + TYF G
Sbjct: 75 KRNIYDK-------YGSLGLYVAEQFGEENVNTYFVSG 105
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A++ K GN +K Y A++ Y+EA+ P A Y NRAAC L + ALDD
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN 105
+ LD +F KG IR+ C +A+ + A+ + ++DP N
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GNE F G A Y EA+K D N + L NRA L K+ ++ A+ DC +
Sbjct: 20 GNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIR 75
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE 338
D ++K R+ C A+ ++ + E ++D S E
Sbjct: 76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 9/120 (7%)
Query: 105 NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH 164
NP +AQE K ++ F+ DY TAM + + A+ + + +A CL
Sbjct: 9 NPELAQEEK---------NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK 59
Query: 165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE 224
L Q A + ++ + D + + CL + A ++ L++ P + +A+E
Sbjct: 60 LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 262 DARNININSKLLH---NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318
+AR IN +L N+ FK G Y A+ A+++DP S R C L
Sbjct: 2 NARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM 61
Query: 319 QYKECVIDAEKIYKMDN 335
+++ + D + ++D+
Sbjct: 62 EFQRALDDCDTCIRLDS 78
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY+ILGV+K A +I+KAY++ A+ +HPDR+ +A E FKE+ EAY +L+
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA-----EAKFKEIKEAYEVLT 57
Query: 416 DPTKRSRYDR-GEDIMEDSG 434
D KR+ YD+ G E G
Sbjct: 58 DSQKRAAYDQYGHAAFEQGG 77
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 8/69 (11%)
Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
YY +LGV NA+ +++KKAYRK AL +HPD++ N E EK FK++ +AY +LSD
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN-------EGEK-FKQISQAYEVLSDA 59
Query: 418 TKRSRYDRG 426
KR YD+G
Sbjct: 60 KKRELYDKG 68
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 5/70 (7%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY+ILGV+K A +I+KAY++ A+ +HPDR+ +A E FKE+ EAY +L+
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA-----EAKFKEIKEAYEVLT 57
Query: 416 DPTKRSRYDR 425
D KR+ YD+
Sbjct: 58 DSQKRAAYDQ 67
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 5/70 (7%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY+ILGV+K A +I+KAY++ A+ +HPDR+ +A E FKE+ EAY +L+
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA-----EAKFKEIKEAYEVLT 57
Query: 416 DPTKRSRYDR 425
D KR+ YD+
Sbjct: 58 DSQKRAAYDQ 67
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
AE+ K +GN Q K++ + A+ Y +AI + P A Y+ NRAA Y LG Y A+ D +
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN 105
A+ +DP +SK R +L A + K ELDPDN
Sbjct: 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GNE+ + A Y +A++++ N+ NRA K+G Y A+ DC A+
Sbjct: 19 GNEQMKVENFEAAVHFYGKAIELNP----ANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVK 356
DP Y KA R +L ++ E V +K ++D E + K LK +E+K
Sbjct: 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY------KSNLKIAELK 126
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From
Aspergillus Fumigatus
Length = 164
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
++K K +GN K+YSKA+ Y++A+S+ P Y NRAA Y G + A +DA+L
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 64 AVSLDPRFSKGLIR 77
A +DP++SK R
Sbjct: 71 ATVVDPKYSKAWSR 84
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GN + +A D+YT+AL I N L NRA G++ +A D LA
Sbjct: 18 GNAAMARKEYSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQHEKAAEDAELATV 73
Query: 299 KDPNYLKALSRRCKCFHALGQYK 321
DP Y KA SR + YK
Sbjct: 74 VDPKYSKAWSRLGLARFDMADYK 96
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 8/69 (11%)
Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
YY +LGV +AS +++KKAYRK AL HPD++ + + FK++ +AY +LSD
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ--------FKQISQAYEVLSDE 61
Query: 418 TKRSRYDRG 426
KR YD+G
Sbjct: 62 KKRQIYDQG 70
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 8/67 (11%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPT 418
Y +LGV+ +A+ ++KK YRK AL +HPD+ T T+ FKE+ EA+ IL+DP
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEK--------FKEISEAFEILNDPQ 62
Query: 419 KRSRYDR 425
KR YD+
Sbjct: 63 KREIYDQ 69
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
DYY+ILGV +NAS +IKKAY + A +HPD + + +A +EK F ++ EAY +LSD
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKA----KEK-FSQLAEAYEVLSD 62
Query: 417 PTKRSRYD 424
KR +YD
Sbjct: 63 EVKRKQYD 70
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
SA++ KE GN + ++Y +A CY AI+ P VA YY NRA CY+ + AL D +
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK 96
A+ LD + K +C + + A +NL+
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 96
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GN FV K EA Y A+ RN + + NRA KM + +A+ADC ALE
Sbjct: 11 GNRLFVGRKYPEAAACYGRAI---TRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
D +KA +C + Y E + + ++ Y +
Sbjct: 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGIL 414
++++Y +LGV+K ASS +I++A++K AL HPD++ N A F ++ AY +L
Sbjct: 1 IQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAH-----GDFLKINRAYEVL 55
Query: 415 SDPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMFQTYFD 454
D R +YD+ GE +ED+ GG + + ++ F Y D
Sbjct: 56 KDEDLRKKYDKYGEKGLEDN-QGGQYESWSYYRYDFGIYDD 95
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
YY ILGV K+AS IKKA+ K A+ +HPD++ + + E F+E+ EAY LSD
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP------DAEAKFREIAEAYETLSDA 62
Query: 418 TKRSRYD 424
+R YD
Sbjct: 63 NRRKEYD 69
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
SE+KDYY I+GV IK AYR+ A +HPD +++ + E FKEV EA+
Sbjct: 2 SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD------VSKEPDAEARFKEVAEAWE 55
Query: 413 ILSDPTKRSRYDR 425
+LSD +R+ YD+
Sbjct: 56 VLSDEQRRAEYDQ 68
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
SA++ KE GN + ++Y +A CY AI+ P VA YY NRA CY+ + AL D +
Sbjct: 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK 96
A+ LD + K +C + + A +NL+
Sbjct: 68 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 101
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GN FV K EA Y A+ RN + + NRA KM + +A+ADC ALE
Sbjct: 16 GNRLFVGRKYPEAAACYGRAI---TRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALE 71
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDY 358
D +KA +C + Y E + + ++ Y + + NF ++ L+ ++ K +
Sbjct: 72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIAKKKRW 130
Query: 359 YKI 361
I
Sbjct: 131 NSI 133
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GN + G Q+A + Y +AL++D N + +N +K G Y +AI ALE
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNN----ASAWYNLGNAYYKQGDYQKAIEYYQKALE 71
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
DPN KA RR ++ G Y++ + D +K ++D
Sbjct: 72 LDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
SAE K GN YK Y KA++ Y +A+ + PN A+ + N Y G Y A++ +
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN 105
A+ LDP +K R+ GD A + + ELDP+N
Sbjct: 68 KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
++ N +K G Y +AI ALE DPN A ++ G Y++ + +K
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 330 IYKMD 334
++D
Sbjct: 69 ALELD 73
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+++Y +LGV+K ASS +I++A++K AL HPD++ N A F ++ AY +L
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAH-----GDFLKINRAYEVLK 75
Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMFQTYFD 454
D R +YD+ GE +ED+ GG + + ++ F Y D
Sbjct: 76 DEDLRKKYDKYGEKGLEDN-QGGQYESWSYYRYDFGIYDD 114
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
D Y++LGV++ AS DIKKAY+K A HPD++ + E F ++ +AY ILS+
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG------AEDRFIQISKAYEILSN 71
Query: 417 PTKRSRYD 424
KR+ YD
Sbjct: 72 EEKRTNYD 79
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLH-NRATVLFKMGKYNEAIADCTLAL 297
GNE F G A YT+AL +DA + +LH NRA K+ Y++A + + A+
Sbjct: 35 GNELFKCGDYGGALAAYTQALGLDA--TPQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92
Query: 298 EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
EKD +KAL RR + LG+ + V+D ++ ++
Sbjct: 93 EKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISV--CP-NVAAYYGNRAACYMMLGMYTYALD 59
S E+ +++GN +K Y AL Y++A+ + P + A + NRAAC++ L Y A
Sbjct: 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET 86
Query: 60 DAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMA 119
+A A+ D K L R+ + LG A +L+ L+P N K +
Sbjct: 87 EASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN-------KVFQEAL 139
Query: 120 KNFEGASKA 128
+N G S
Sbjct: 140 RNISGPSSG 148
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A + K GN + K +++A+K Y AI + PN +Y N +ACY+ G ++
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL 98
A+ + P SK L+R+ N +LG+ A +L L
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 217 PDHAKAK--ETYKRXXXXXXXXXXGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLH 274
PD A+ K +R GN F A EA Y A+++D S
Sbjct: 8 PDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS---- 63
Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVID 326
N + G + I T ALE P++ KAL RR +LG + + + D
Sbjct: 64 NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein
1 Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%)
Query: 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL 67
K GN ++ Y +A+K Y+EAI P A Y NRAACY L + AL D + + L
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79
Query: 68 DPRFSKGLIRQ 78
+P F KG R+
Sbjct: 80 EPTFIKGYTRK 90
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GNE F G +A YTEA+K + ++ +KL NRA K+ ++ A+ DC ++
Sbjct: 23 GNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQ 78
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336
+P ++K +R+ A+ Y + + +K +D+S
Sbjct: 79 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 272 LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIY 331
++ N+ F+ G Y +A+ T A++++P K S R C+ L +++ + D E+
Sbjct: 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI 77
Query: 332 KMDNSRENHNFLEEAKRLLKRSE-VKDYYKILGVTKNA 368
+++ + F++ R E +KDY K + V + A
Sbjct: 78 QLEPT-----FIKGYTRKAAALEAMKDYTKAMDVYQKA 110
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A + K GN + K +++A+K Y AI + PN +Y N +ACY+ G ++
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL 98
A+ + P SK L+R+ N +LG+ A +L L
Sbjct: 81 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 217 PDHAKAK--ETYKRXXXXXXXXXXGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLH 274
PD A+ K +R GN F A EA Y A+++D N + +
Sbjct: 4 PDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-----NEPVFY 58
Query: 275 -NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVID 326
N + G + I T ALE P++ KAL RR +LG + + + D
Sbjct: 59 SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 111
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
E+KDYY ILGV IK AYR+ A +HPD +++ + E FK++ EA+ +
Sbjct: 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPD------VSKENDAEAKFKDLAEAWEV 79
Query: 414 LSDPTKRSRYDRGEDIMEDSGMG 436
L D +R+ YD+ D G G
Sbjct: 80 LKDEQRRAEYDQLWQHRNDPGFG 102
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNEKFVAG 246
+A + G Y D A+ ++Q L+L P A+A GN + G
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA------------WYNLGNAYYKQG 49
Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306
EA + Y +AL++D R+ ++ +N +K G Y+EAI ALE DP +A
Sbjct: 50 DYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Query: 307 LSRRCKCFHALGQYKECVIDAEKIYKMD 334
++ G Y E + +K ++D
Sbjct: 106 WYNLGNAYYKQGDYDEAIEYYQKALELD 133
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRX 229
EA E L D ++ +A + G Y D A+ ++Q L+L P A+A
Sbjct: 19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA------- 71
Query: 230 XXXXXXXXXGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA 289
GN + G EA + Y +AL++D R+ ++ +N +K G Y+EA
Sbjct: 72 -----WYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEA 122
Query: 290 IADCTLALEKDP 301
I ALE DP
Sbjct: 123 IEYYQKALELDP 134
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
SAE GN YK Y +A++ Y +A+ + P A + N Y G Y A++ +
Sbjct: 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDP 103
A+ LDPR ++ GD A + ELDP
Sbjct: 94 KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
GN YK Y +A++ Y +A+ + P A + N Y G Y A++ + A+ LDPR
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDP 103
++ GD A + ELDP
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
SAE GN YK Y +A++ Y +A+ + P A + N Y G Y A++ +
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Query: 63 LAVSLDPR 70
A+ LDPR
Sbjct: 128 KALELDPR 135
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%)
Query: 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL 67
KE GN + AL+CYSEAI + P+ Y NR+A Y G Y A +D V L
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 68 DPRFSKGLIRQ 78
P + KG R+
Sbjct: 68 KPDWGKGYSRK 78
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GN+ G +A Y+EA+K+D N L NR+ K G Y +A D ++
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 299 KDPNYLKALSRRCKCFHALGQYKE 322
P++ K SR+ L +++E
Sbjct: 67 LKPDWGKGYSRKAAALEFLNRFEE 90
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 350 LKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQ-EKLFKEVG 408
L+++ KD+Y ILG +A+ D+K+ Y+K L++HPD+ + A +E+ + F E+
Sbjct: 10 LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEID 69
Query: 409 EAYGILSDPTKRSRYD 424
+A+ IL + + +YD
Sbjct: 70 QAWKILGNEETKKKYD 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQ-EKLFKEVGEAYGIL 414
KD+Y ILG +A+ D+K+ Y+K L++HPD+ + A +E+ + F E+ +A+ IL
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 415 SDPTKRSRYD--RGEDIMEDSG 434
+ + YD R ED + + G
Sbjct: 70 GNEETKREYDLQRCEDDLRNVG 91
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKI---DARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
G E F A YTE +K DAR + NRA L K+ + EAIADC
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS-------NRAAALAKLMSFPEAIADCNK 63
Query: 296 ALEKDPNYLKALSRRCKCFHALGQY 320
A+EKDPN+++A R+ A+ +Y
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEY 88
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%)
Query: 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDA 61
+ AE+ + +G + + A+K Y+E I P A Y NRAA L + A+ D
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 62 KLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD 104
A+ DP F + IR+ IA+ + +A L A + D +
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 104
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPT 418
Y +LGV A+ IK AY ++ ++HPDR++ + +A + F + +AY +L T
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAA-----ERFTRISQAYVVLGSAT 74
Query: 419 KRSRYDRGEDIMEDSGMGG 437
R +YDRG ++ D + G
Sbjct: 75 LRRKYDRG--LLSDEDLRG 91
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKI---DARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
G E F A YTE +K DAR + NRA L K+ + EAIADC
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS-------NRAAALAKLMSFPEAIADCNK 198
Query: 296 ALEKDPNYLKALSRRCKCFHALGQY 320
A+EKDPN+++A R+ A+ +Y
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEY 223
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
AE+ + +G + + A+K Y+E I P A Y NRAA L + A+ D
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD 104
A+ DP F + IR+ IA+ + +A L A + D +
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A+K K +GN YK +Q+ +A++ Y++A + ++ Y NRAA G Y A+
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLND 63
Query: 64 AV 65
AV
Sbjct: 64 AV 65
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GN+ + A + EA + Y +A ++ ++I L+NRA ++ G+Y AI+ A+E
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELH-KDIT----YLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 299 KD----PNY---LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLK 351
+ +Y K+ +R +H LG K+ + +K + + L A++ LK
Sbjct: 67 QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELK 126
Query: 352 RSEVKDY 358
++E + Y
Sbjct: 127 KAEAEAY 133
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GN + G EA + Y +AL++D N ++ +N +K G Y+EAI ALE
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
DPN +A ++ G Y E + +K ++D
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
SAE GN YK Y +A++ Y +A+ + PN A + N Y G Y A++ +
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN 105
A+ LDP ++ GD A + ELDP+N
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
++ +N +K G Y+EAI ALE DPN +A ++ G Y E + +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 330 IYKMD 334
++D
Sbjct: 69 ALELD 73
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL 67
K+ GN ++ K+Y A+K Y+ A+ + + +Y N +ACY+ +G ++ + A+ L
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 68 DPRFSKGLIRQIKCNIALGDAPTARSNLKAL 98
P +SK L+R+ N LG A +L L
Sbjct: 69 KPDYSKVLLRRASANEGLGKFADAMFDLSVL 99
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GN+ F K +A Y AL++ + N + +G + + T ALE
Sbjct: 13 GNQFFRNKKYDDAIKYYNWALELKEDPV-----FYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVID 326
P+Y K L RR LG++ + + D
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFD 95
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAY---------------YGNRAACYMMLG 52
KE G +K +Y +AL Y + +S +++ + N A C++ L
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 53 MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
++ A++ A+ LD KGL R+ + ++A+ D AR++ + + +L P+N A
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
N A K+ ++ AI C ALE D N K L RR + A+ ++ D +K+ ++
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQL 259
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALD 59
EK KE GN+ +K Y +A+ CY + I+ P Y N+A + LG YT A+
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL 297
GN F G +EA Y + + +N S N+A L K+G+Y +AI C L
Sbjct: 11 GNSLFKQGLYREAVHCYDQLITAQPQNPVGYS----NKAMALIKLGEYTQAIQMCQQGL 65
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAY---------------YGNRAACYMMLG 52
KE G +K +Y +AL Y + +S +++ + N A C++ L
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 53 MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
++ A++ A+ LD KGL R+ + ++A+ D AR++ + + +L P+N A
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
N A K+ ++ AI C ALE D N K LSRR + A+ ++ D +K+ ++
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 351 KRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEA 410
+ + +DYY +LG + +S + I ++ RAL HPD+H +A + F+++ +A
Sbjct: 15 RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAV-----ETFQKLQKA 69
Query: 411 YGILSDPTKRSRYD 424
IL++ R+RYD
Sbjct: 70 KEILTNEESRARYD 83
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
GN + + + +A+ Y A+S+ PN A +GN A Y G+ A+D + A+ L P
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 71 FSKGLIRQIKCNIA 84
F CN+A
Sbjct: 270 FPDAY-----CNLA 278
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
GN L + +A CY +AI PN A + N + G A+ + AV+LDP
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Query: 71 FSKGLI 76
F I
Sbjct: 202 FLDAYI 207
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 124/324 (38%), Gaps = 45/324 (13%)
Query: 30 AISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP 89
AI P +A Y N Y G A++ + A+ L P F G I +A GD
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS----KAFEAN-DYRTAMFYLDRA 144
A + + +PD + + L E A KA E ++ A L
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 145 MD-QG-VASKTYKLMKAECL------AHLNR---LQEAQEIANSILATDKQ---NPDAVF 190
+ QG + + KA L A++N L+EA+ ++ A + +P+
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 191 VRG--LCLYYDDKM-DLAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNEKFVAGK 247
V G C+YY+ + DLA++ ++ ++L P A N G
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA------------YCNLANALKEKGS 286
Query: 248 NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA- 306
EA D Y AL++ ++ L+N A + + G EA+ ALE P + A
Sbjct: 287 VAEAEDCYNTALRL----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 307 ------LSRRCKCFHALGQYKECV 324
L ++ K AL YKE +
Sbjct: 343 SNLASVLQQQGKLQEALMHYKEAI 366
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 28/175 (16%)
Query: 245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL 304
AG + A Y AL+ + + S L +L +G+ EA A A+E PN+
Sbjct: 114 AGDMEGAVQAYVSALQYNPDLYCVRSDL----GNLLKALGRLEEAKACYLKAIETQPNFA 169
Query: 305 KALSRRCKCFHALGQYKECVIDAEKIYKMDNSREN-----HNFLEEAKRLLKRSEVKDYY 359
A S F+A G+ + EK +D + + N L+EA R+ R+ V Y
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA-RIFDRA-VAAYL 227
Query: 360 KILGVTKN--ASSDDIKKAYRKRALV---------------HHPDRHTNATQAQK 397
+ L ++ N ++ Y ++ L+ H PD + N A K
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 282
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL 67
+E GN + ++ Y KAL+ + P AA + N A+ G AL K A+ +
Sbjct: 316 REQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
Query: 68 DPRFS 72
P F+
Sbjct: 369 SPTFA 373
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 344 EEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDR 388
E+A + + KD + +LGV AS D++ KAYRK A++ HPD+
Sbjct: 15 EQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 15/115 (13%)
Query: 8 KEDGNTQYKLKQYSKALKCYSEAISVCPN---------------VAAYYGNRAACYMMLG 52
KE G +K +Y +A+ Y + +S + A + N A CY+ L
Sbjct: 272 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 53 MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
YT A++ A+ LD KGL R+ + + + + +A+ + + + E++P N A
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GN + G EA + Y +AL++ N ++ +N +K G Y+EAI ALE
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 299 KDPNYLKALSRRCKCFHALGQYKECV 324
PN +A ++ G Y E +
Sbjct: 72 LYPNNAEAWYNLGNAYYKQGDYDEAI 97
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
SAE GN YK Y +A++ Y +A+ + PN A + N Y G Y A++ +
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN 105
A+ L P ++ GD A + EL P+N
Sbjct: 68 KALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 110
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV 324
++ +N +K G Y+EAI ALE PN +A ++ G Y E +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 15/115 (13%)
Query: 8 KEDGNTQYKLKQYSKALKCYSEAISVCPN---------------VAAYYGNRAACYMMLG 52
KE G +K +Y +A+ Y + +S + A + N A CY+ L
Sbjct: 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 53 MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
YT A++ A+ LD KGL R+ + + + + +A+ + + + E++P N A
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GN + G EA + Y +AL++D N ++ +N +K G Y+EAI ALE
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 299 KDPN 302
DPN
Sbjct: 72 LDPN 75
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
++ +N +K G Y+EAI ALE DPN +A ++ G Y E + +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 330 IYKMD-NSRENHNFLEEAKR 348
++D N+ E L AK+
Sbjct: 69 ALELDPNNAEAKQNLGNAKQ 88
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
SAE GN YK Y +A++ Y +A+ + PN A + N Y G Y A++ +
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 63 LAVSLDPR 70
A+ LDP
Sbjct: 68 KALELDPN 75
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAI----------------SVCPNVAAYYGNRA 45
L +E K GNT +K + + A+K Y++ + + P + N
Sbjct: 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 280
Query: 46 ACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN 105
AC + + + A+D A+ +DP +K L R+ + L + A ++LK QE+ P++
Sbjct: 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340
Query: 106 PAIAQE 111
AI E
Sbjct: 341 KAIQAE 346
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
N KM + A+ C ALE DP+ KAL RR + + L +Y + + D +K
Sbjct: 278 NIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
GN + G EA + Y +AL++D R+ ++ +N +K G Y+EAI ALE
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 299 KDP 301
DP
Sbjct: 66 LDP 68
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
SAE GN YK Y +A++ Y +A+ + P A + N Y G Y A++ +
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 63 LAVSLDPR 70
A+ LDPR
Sbjct: 62 KALELDPR 69
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328
+++ +N +K G Y+EAI ALE DP +A ++ G Y E + +
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 329 KIYKMD 334
K ++D
Sbjct: 62 KALELD 67
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
A CL L R EA N +L +++NP A+F RG +MD A + F+ K APD
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ 319
N A L K+ +Y+EAI C + L ++ KAL RR K LGQ
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ 279
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 359 YKILGVTKNA-SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
Y +L V + + KAYR A HHPDR N + +KL E+ F+ + AY L D
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN--KEEKLLAEERFRVIATAYETLKDD 75
Query: 418 TKRSRYD 424
++ YD
Sbjct: 76 EAKTNYD 82
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A+ + GNT +++ AL+CY+ AI + P A + N A+ + G A+ +
Sbjct: 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136
Query: 64 AVSLDPRFSKGLIRQIKCNIA 84
A+ L P F CN+A
Sbjct: 137 ALKLKPDFPDAY-----CNLA 152
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL 67
+E GN + ++ Y KAL+ + P AA + N A+ G AL K A+ +
Sbjct: 20 REQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72
Query: 68 DPRFSKGLIRQIKCNIALGDAPTA-RSNLKALQELDPDNPAIAQESKALETMAKNFEGAS 126
P F+ + D A + +A+Q NPA A L ++ K+
Sbjct: 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ----INPAFADAHSNLASIHKDSGNIP 128
Query: 127 KAFEANDYRTAM 138
+A + YRTA+
Sbjct: 129 EAIAS--YRTAL 138
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%)
Query: 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMY 54
K KE GN YK K + ALK Y +A + P Y N+AA Y G Y
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY 54
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQ--EKLFKEVGEAY 411
+K +G+ + + +KK YRK LV HPD+ T Q EQ + +F E+ +A+
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKAT----GQPYEQYAKMIFMELNDAW 170
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%)
Query: 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMY 54
K KE GN YK K + ALK Y +A + P Y N+AA Y G Y
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY 54
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQ--EKLFKEVGEAYGILSD 416
+K +G + + +KK YRK LV HPD+ T Q EQ + +F E+ +A+ +
Sbjct: 39 WKPVGXADLVTPEQVKKVYRKAVLVVHPDKAT----GQPYEQYAKXIFXELNDAWSEFEN 94
Query: 417 PTKRSRY 423
++ Y
Sbjct: 95 QGQKPLY 101
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein,
T-Mod(Vmy), In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein,
T-Mod(Vmy), In Complex With Meevf Peptide
Length = 128
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%)
Query: 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYT 55
K KE GN YK K + ALK Y +A + P Y N+AA Y G Y
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYN 55
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQ--EKLFKEVGEAYGILSD 416
+K +G+ + + +KK YRK LV HPD+ T Q EQ + +F E+ +A+ +
Sbjct: 52 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKAT----GQPYEQYAKMIFMELNDAWSEFEN 107
Query: 417 PTKRSRY 423
++ Y
Sbjct: 108 QGQKPLY 114
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
Length = 127
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYM 49
K+ GN YK K + KA Y +AI + P+ +Y N+AA Y
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF 53
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALV--HHPDRHTNATQAQKLEQEKLFKEVGEA 410
S +Y+++ G+ D + + RAL HPD A++ +L + ++ +A
Sbjct: 1 SNAXNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDA 60
Query: 411 YGILSDPTKRSRY 423
Y L DP +R+ Y
Sbjct: 61 YQTLKDPLRRAEY 73
>pdb|3BVO|A Chain A, Crystal Structure Of Human Co-Chaperone Protein Hscb
pdb|3BVO|B Chain B, Crystal Structure Of Human Co-Chaperone Protein Hscb
Length = 207
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 337 RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRAL--VHHPDRHTNATQ 394
RE+ F + + L +DY+ + ++ D K +R + L + HPD + +Q
Sbjct: 24 REDRFFCPQCRALQAPDPTRDYFSLXDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQ 83
Query: 395 AQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
+K EK V +AY L P R Y
Sbjct: 84 TEKDFSEKHSTLVNDAYKTLLAPLSRGLY 112
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 16/122 (13%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYG----------------NRAA 46
SA KE+GN +K + ++A+ Y EA+ + + N A
Sbjct: 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96
Query: 47 CYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP 106
CY Y A+D A + +D K L + N+ G A+ NL L+P+N
Sbjct: 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156
Query: 107 AI 108
I
Sbjct: 157 DI 158
>pdb|2XCB|A Chain A, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCB|B Chain B, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCC|A Chain A, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
pdb|2XCC|B Chain B, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
Length = 142
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLD-- 68
G QY+ ++ A K + + A Y+ AC LG+Y AL +D
Sbjct: 25 GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84
Query: 69 -PRFSKGLIRQIKCNIALGDAPTARSNL 95
PRF +C++ LGD A S
Sbjct: 85 EPRFP---FHAAECHLQLGDLDGAESGF 109
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
Length = 106
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 373 IKKAYRKRALVHHPDR--HTNATQAQKLEQEKLFKEVGEAY 411
++K+Y++ L+ HPD+ A+ QK EK+F+ + EA+
Sbjct: 57 VRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW 97
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP 217
++C ++ L EA+E ++ +L ++ N A+F R K+D A +LLL+ P
Sbjct: 70 SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 18/114 (15%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVC--------PNVAAY----------YGNR 44
S E ++ GN + K Y +A+ Y +A++ P + Y N
Sbjct: 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANM 69
Query: 45 AACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL 98
+ CY+ +G A + + + + K L R+ K IA A +LK L
Sbjct: 70 SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQ--EKLFKEVGEAY 411
+K +G+ + + +KK YRK LV HP + T Q EQ + +F E+ +A+
Sbjct: 37 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKAT----GQPYEQYAKMIFMELNDAW 87
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQ--EKLFKEVGEAY 411
+K +G+ + + +KK YRK LV HP + T Q EQ + +F E+ +A+
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKAT----GQPYEQYAKMIFMELNDAW 86
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 373 IKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
++K YR+ HHPD ++ + +AY L DP +RS+Y
Sbjct: 35 LRKEYRQLQAQHHPDMAQQGSEQSS--------TLNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 373 IKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
++K YR+ HHPD ++ + +AY L DP +RS+Y
Sbjct: 27 LRKEYRQLQAQHHPDMAQQGSEQSS--------TLNQAYHTLKDPLRRSQY 69
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALV--HHPDRHTNATQAQKLEQEKLFKEVGEAYGIL 414
DY+ + G+ D + R + L +HPD+ + +QA++L + + +A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 415 SDPTKRSRY 423
P R+ Y
Sbjct: 62 RHPLMRAEY 70
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 107 AIAQESKALE---TMAKNFEGASKAFEAND-YRTAMFYLDRAMDQGVASKTYKLMKAECL 162
A+A KALE + A + GA + + Y+ A ++A+ G+ + M L
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL 135
Query: 163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA 222
L + + A + ++ + +A F G+CL + +D A++ F + + P HA A
Sbjct: 136 VKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 37/88 (42%)
Query: 135 RTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL 194
+ A+ YL RA++ + CLA+ L EA ++ D + DA + G+
Sbjct: 142 KLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGV 201
Query: 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKA 222
Y + + A+ + + PDH A
Sbjct: 202 TYAYKENREKALEMLDKAIDIQPDHMLA 229
>pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4
Length = 361
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 297 LEKDPNYLKALSRRCKCFHAL----GQYKECVIDAEKIY--KMDNSRENHNFLEEAKRLL 350
L K+ N L+ ++ + K + L +Y E V + KI ++ + N LEE K L
Sbjct: 207 LSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKSKIPHGRIVTMKRNSRNLEEIKPYL 266
Query: 351 KRSEVKDYYKI-----LGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKL 403
R+ + YYK+ + A ++D+ R R H + T +++ KL Q+ L
Sbjct: 267 FRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKIL 324
>pdb|4AM9|A Chain A, Crystal Structure Of The Yersinia Enterocolitica Type Iii
Secretion Chaperone Sycd In Complex With A Peptide Of
The Translocator Yopd
Length = 148
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 14 QYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMMLGMYTYALDDAKLAVSLD---P 69
QY+ +Y A K + +A+ V + + ++ AC +G Y A+ +D P
Sbjct: 31 QYQSGKYEDAHKVF-QALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIKEP 89
Query: 70 RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETM 118
RF +C + G+ A S L QEL + P + S + +M
Sbjct: 90 RFP---FHAAECLLQKGELAEAESGLFLAQELIANKPEFKELSTRVSSM 135
>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|C Chain C, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|E Chain E, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|G Chain G, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|I Chain I, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|K Chain K, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|M Chain M, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|O Chain O, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
Length = 71
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 356 KDYYKILGVTKNA-SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKE 406
K+ +IL +T+N + +K+ +RK L +HPD+ + A K+ + K F E
Sbjct: 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLE 65
>pdb|2D0V|A Chain A, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|D Chain D, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|I Chain I, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
Length = 597
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDR----------HTNATQAQKLEQE-KLFK 405
D + GV S+ K +KR L+ HPDR + + A KL+ +FK
Sbjct: 300 DEWDFAGVNVIMLSEQTDKTGKKRKLLTHPDRNGIVYTLDRENGDLISADKLDDTVNVFK 359
Query: 406 EVGEAYGI-LSDPTKRSRYD-RGEDIMEDSGMGGH 438
V G+ + DP +R D +G DI S MG H
Sbjct: 360 TVDLKTGLPVRDPEYGTRMDHKGTDICP-SAMGYH 393
>pdb|2VGX|A Chain A, Structure Of The Yersinia Enterocolitica Type Iii
Secretion Translocator Chaperone Sycd
Length = 148
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 40 YYGNRAACYMMLGMYTYALDDAKLAVSLD---PRFSKGLIRQIKCNIALGDAPTARSNLK 96
++ AC +G Y A+ +D PRF +C + G+ A S L
Sbjct: 57 FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP---FHAAECLLQXGELAEAESGLF 113
Query: 97 ALQELDPDNPAIAQESKALETM 118
QEL + P + S + +M
Sbjct: 114 LAQELIANXPEFXELSTRVSSM 135
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 79/212 (37%), Gaps = 37/212 (17%)
Query: 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDR 143
+LG AR++ + PD P + T A NF+ A +AF+ ++ LD
Sbjct: 55 SLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFD------SVLELD- 107
Query: 144 AMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMD 203
TY AHLNR IA DK D + L Y DD D
Sbjct: 108 --------PTYN------YAHLNR-----GIALYYGGRDKLAQDDL----LAFYQDDPND 144
Query: 204 LAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNE--KFVAGKNQEAFDIYTEALKI 261
+ + L + D +AKE K+ G +F G E E LK
Sbjct: 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE--QTLXERLKA 202
Query: 262 DARNININSKLLHNRATVLFKMGKYNEAIADC 293
DA + N+ L + + F +GKY ++ D
Sbjct: 203 DATD---NTSLAEHLSETNFYLGKYYLSLGDL 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,314,885
Number of Sequences: 62578
Number of extensions: 521130
Number of successful extensions: 1574
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1325
Number of HSP's gapped (non-prelim): 213
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)