Query psy16214
Match_columns 470
No_of_seqs 957 out of 3209
Neff 11.0
Searched_HMMs 46136
Date Fri Aug 16 23:44:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0624|consensus 100.0 1.5E-68 3.2E-73 451.1 42.9 428 3-432 37-468 (504)
2 KOG0550|consensus 100.0 4.2E-61 9.1E-66 415.7 28.8 426 3-468 48-486 (486)
3 KOG4626|consensus 100.0 3.6E-41 7.7E-46 305.7 33.6 327 4-346 116-499 (966)
4 KOG4626|consensus 100.0 4.8E-39 1.1E-43 291.9 27.8 315 6-336 50-420 (966)
5 TIGR00990 3a0801s09 mitochondr 100.0 1.6E-34 3.6E-39 288.8 48.6 316 4-336 127-499 (615)
6 TIGR00990 3a0801s09 mitochondr 100.0 1.9E-32 4.2E-37 273.9 42.7 310 3-336 159-574 (615)
7 PRK15174 Vi polysaccharide exp 100.0 4.5E-32 9.7E-37 270.3 43.0 331 5-364 77-419 (656)
8 KOG0548|consensus 100.0 4.5E-32 9.8E-37 244.0 36.4 342 4-350 2-473 (539)
9 KOG0547|consensus 100.0 5.7E-32 1.2E-36 239.8 32.2 318 3-336 114-535 (606)
10 PRK11447 cellulose synthase su 100.0 7.1E-30 1.5E-34 271.3 46.7 318 9-346 274-680 (1157)
11 PRK11447 cellulose synthase su 100.0 4E-30 8.8E-35 273.2 44.2 318 3-336 302-703 (1157)
12 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-29 5.5E-34 265.5 47.6 336 6-346 433-813 (899)
13 PRK15174 Vi polysaccharide exp 100.0 1.6E-29 3.5E-34 252.0 39.2 274 3-304 109-386 (656)
14 TIGR02917 PEP_TPR_lipo putativ 100.0 3.7E-29 8.1E-34 264.3 43.7 315 4-336 499-835 (899)
15 PRK10049 pgaA outer membrane p 100.0 7.1E-28 1.5E-32 245.3 42.2 340 3-347 48-470 (765)
16 KOG1126|consensus 100.0 5.6E-29 1.2E-33 229.7 27.8 300 9-336 324-623 (638)
17 PRK11788 tetratricopeptide rep 100.0 6.6E-27 1.4E-31 222.7 38.1 300 4-332 35-346 (389)
18 KOG2002|consensus 100.0 3.9E-26 8.4E-31 218.6 35.4 340 3-346 306-725 (1018)
19 KOG0624|consensus 100.0 1.9E-26 4.1E-31 196.3 29.6 360 34-418 34-431 (504)
20 KOG0547|consensus 100.0 3.4E-26 7.3E-31 203.4 30.3 309 4-336 149-569 (606)
21 KOG1155|consensus 100.0 4.5E-25 9.7E-30 195.1 36.5 302 3-332 163-494 (559)
22 KOG2002|consensus 100.0 1.2E-24 2.6E-29 208.5 41.9 346 3-348 163-575 (1018)
23 PRK10049 pgaA outer membrane p 100.0 4.7E-25 1E-29 224.7 41.7 320 4-336 15-425 (765)
24 PRK11788 tetratricopeptide rep 100.0 7.2E-25 1.6E-29 208.7 38.7 277 38-338 35-316 (389)
25 KOG1126|consensus 100.0 6.5E-27 1.4E-31 216.1 23.4 272 6-305 355-626 (638)
26 PRK09782 bacteriophage N4 rece 100.0 1.9E-25 4.1E-30 227.7 36.4 285 22-338 459-745 (987)
27 PRK09782 bacteriophage N4 rece 100.0 2E-24 4.3E-29 220.3 40.9 302 3-336 375-709 (987)
28 KOG1155|consensus 99.9 2.5E-24 5.5E-29 190.4 32.2 310 10-347 233-551 (559)
29 KOG1173|consensus 99.9 1.1E-23 2.3E-28 191.1 29.8 289 36-349 242-535 (611)
30 KOG2076|consensus 99.9 1.1E-22 2.5E-27 193.8 37.1 317 3-334 138-513 (895)
31 PF13429 TPR_15: Tetratricopep 99.9 4.9E-25 1.1E-29 199.0 15.1 262 42-333 12-277 (280)
32 TIGR00540 hemY_coli hemY prote 99.9 6.9E-22 1.5E-26 187.5 36.4 303 4-333 84-399 (409)
33 KOG1174|consensus 99.9 3.8E-22 8.2E-27 174.2 30.4 307 11-346 203-514 (564)
34 PRK14574 hmsH outer membrane p 99.9 1.8E-21 3.9E-26 194.9 39.6 322 6-344 104-524 (822)
35 KOG2003|consensus 99.9 3.7E-22 8.1E-27 176.4 30.3 189 132-336 504-692 (840)
36 COG0484 DnaJ DnaJ-class molecu 99.9 3.1E-25 6.8E-30 195.9 9.5 99 355-458 3-104 (371)
37 PRK14574 hmsH outer membrane p 99.9 1E-20 2.2E-25 189.6 41.8 323 3-336 33-482 (822)
38 PRK12370 invasion protein regu 99.9 9.3E-22 2E-26 193.5 32.1 263 41-334 261-536 (553)
39 PF13429 TPR_15: Tetratricopep 99.9 4.4E-24 9.6E-29 192.8 14.5 263 7-299 11-277 (280)
40 PRK10747 putative protoheme IX 99.9 1.6E-20 3.5E-25 177.2 37.8 300 3-334 83-391 (398)
41 KOG1125|consensus 99.9 1.1E-22 2.3E-27 185.4 20.0 260 8-322 289-560 (579)
42 PRK12370 invasion protein regu 99.9 3.8E-21 8.2E-26 189.2 32.1 228 86-334 275-503 (553)
43 KOG0495|consensus 99.9 3.7E-20 7.9E-25 170.6 35.9 321 4-336 516-883 (913)
44 KOG2076|consensus 99.9 1.4E-19 3E-24 173.0 36.1 298 38-350 139-496 (895)
45 PRK11189 lipoprotein NlpI; Pro 99.9 2.5E-20 5.4E-25 168.5 28.4 232 53-316 41-283 (296)
46 KOG0548|consensus 99.9 1.7E-19 3.8E-24 163.3 32.9 330 41-387 5-476 (539)
47 KOG1174|consensus 99.9 5.3E-20 1.1E-24 160.9 27.6 279 3-310 231-511 (564)
48 KOG1129|consensus 99.9 1.6E-20 3.4E-25 159.5 22.0 265 46-336 187-461 (478)
49 KOG1173|consensus 99.9 1.6E-19 3.4E-24 164.2 29.5 336 5-368 142-522 (611)
50 KOG1156|consensus 99.9 4E-19 8.7E-24 164.0 32.0 332 5-336 8-437 (700)
51 KOG2003|consensus 99.9 1.3E-19 2.8E-24 160.4 27.7 296 6-330 421-719 (840)
52 TIGR00540 hemY_coli hemY prote 99.9 9.1E-19 2E-23 166.2 35.3 285 39-349 85-382 (409)
53 KOG1125|consensus 99.9 9.4E-21 2E-25 172.9 20.4 254 42-350 289-555 (579)
54 TIGR02521 type_IV_pilW type IV 99.9 1.6E-19 3.4E-24 159.2 26.8 203 3-217 30-234 (234)
55 KOG0550|consensus 99.9 1.6E-20 3.5E-25 164.2 19.5 327 38-411 49-401 (486)
56 KOG1129|consensus 99.9 1.8E-20 3.8E-25 159.2 18.6 272 13-313 188-472 (478)
57 PRK11189 lipoprotein NlpI; Pro 99.9 1.3E-19 2.9E-24 163.8 25.2 222 84-337 38-269 (296)
58 COG2956 Predicted N-acetylgluc 99.9 4.5E-18 9.7E-23 144.6 31.7 271 42-336 39-314 (389)
59 PRK10747 putative protoheme IX 99.9 3.5E-18 7.7E-23 161.3 34.9 269 7-300 121-391 (398)
60 TIGR02521 type_IV_pilW type IV 99.9 9.4E-19 2E-23 154.2 26.9 202 37-262 30-233 (234)
61 COG3063 PilF Tfp pilus assembl 99.9 9.6E-19 2.1E-23 142.1 24.0 208 4-223 35-244 (250)
62 KOG0713|consensus 99.8 2.3E-21 4.9E-26 166.2 8.3 71 353-428 13-83 (336)
63 KOG4162|consensus 99.8 7.6E-19 1.6E-23 165.3 25.1 292 20-339 460-789 (799)
64 COG3063 PilF Tfp pilus assembl 99.8 3.2E-18 6.8E-23 139.1 24.4 200 121-336 38-239 (250)
65 PLN02789 farnesyltranstransfer 99.8 4.3E-18 9.3E-23 153.3 28.0 219 38-282 37-267 (320)
66 PLN02789 farnesyltranstransfer 99.8 6.5E-18 1.4E-22 152.1 29.0 202 13-226 46-261 (320)
67 KOG0712|consensus 99.8 5.3E-21 1.1E-25 166.7 7.7 87 356-457 4-91 (337)
68 COG2956 Predicted N-acetylgluc 99.8 8.4E-17 1.8E-21 136.9 32.7 293 8-331 39-345 (389)
69 KOG0495|consensus 99.8 4.6E-16 9.9E-21 144.0 38.9 307 3-338 478-787 (913)
70 KOG1156|consensus 99.8 1.9E-16 4.1E-21 146.6 32.9 329 3-335 40-470 (700)
71 KOG4162|consensus 99.8 3.1E-16 6.7E-21 148.0 32.7 341 4-349 323-766 (799)
72 PLN03218 maturation of RBCL 1; 99.8 4.9E-15 1.1E-19 153.1 44.0 297 6-333 439-748 (1060)
73 cd05804 StaR_like StaR_like; a 99.8 1E-15 2.3E-20 143.8 34.5 311 3-335 5-338 (355)
74 KOG1840|consensus 99.8 6.2E-17 1.3E-21 152.0 25.7 252 68-333 195-479 (508)
75 KOG1840|consensus 99.8 7.3E-17 1.6E-21 151.5 25.0 244 5-299 200-479 (508)
76 PLN03218 maturation of RBCL 1; 99.8 1.4E-14 3E-19 149.8 43.1 301 3-336 471-786 (1060)
77 TIGR03302 OM_YfiO outer membra 99.8 1.1E-16 2.3E-21 141.0 23.0 188 2-218 31-235 (235)
78 PLN03081 pentatricopeptide (PP 99.8 1.4E-15 3.1E-20 155.0 33.3 306 5-336 159-526 (697)
79 PLN03081 pentatricopeptide (PP 99.8 2.5E-15 5.3E-20 153.2 34.2 291 7-334 262-558 (697)
80 PRK14288 chaperone protein Dna 99.8 1.5E-18 3.3E-23 159.6 9.2 68 356-428 3-70 (369)
81 KOG1127|consensus 99.7 7.7E-16 1.7E-20 148.7 25.9 306 16-336 470-882 (1238)
82 KOG0553|consensus 99.7 2.2E-17 4.8E-22 139.9 13.3 113 3-115 80-192 (304)
83 KOG1127|consensus 99.7 3.9E-16 8.4E-21 150.7 22.6 315 4-335 492-915 (1238)
84 PF12569 NARP1: NMDA receptor- 99.7 3.4E-15 7.3E-20 142.2 28.8 302 3-335 3-336 (517)
85 PTZ00037 DnaJ_C chaperone prot 99.7 3.9E-18 8.5E-23 158.1 8.1 88 355-456 27-114 (421)
86 TIGR03302 OM_YfiO outer membra 99.7 2.1E-15 4.4E-20 132.8 24.3 148 155-335 73-234 (235)
87 PRK14286 chaperone protein Dna 99.7 9.4E-18 2E-22 154.6 9.2 96 356-456 4-107 (372)
88 PRK14287 chaperone protein Dna 99.7 1.1E-17 2.3E-22 154.2 9.5 94 356-456 4-99 (371)
89 PRK14296 chaperone protein Dna 99.7 9.4E-18 2E-22 154.4 8.6 67 356-428 4-70 (372)
90 cd05804 StaR_like StaR_like; a 99.7 2.3E-14 5E-19 134.7 31.8 284 33-334 1-294 (355)
91 KOG2376|consensus 99.7 1.1E-13 2.4E-18 127.2 33.6 334 5-363 13-400 (652)
92 PRK14299 chaperone protein Dna 99.7 3.2E-17 6.8E-22 146.2 10.1 67 356-428 4-70 (291)
93 PRK14285 chaperone protein Dna 99.7 3E-17 6.4E-22 150.9 9.2 96 356-456 3-107 (365)
94 PLN03077 Protein ECB2; Provisi 99.7 2.1E-13 4.7E-18 142.5 39.2 192 128-344 434-664 (857)
95 COG3071 HemY Uncharacterized e 99.7 5.8E-13 1.3E-17 117.3 35.3 299 4-334 84-391 (400)
96 PLN03077 Protein ECB2; Provisi 99.7 8.4E-14 1.8E-18 145.5 36.0 304 3-333 353-720 (857)
97 PRK14278 chaperone protein Dna 99.7 3.4E-17 7.4E-22 151.2 9.5 94 356-456 3-99 (378)
98 PRK14279 chaperone protein Dna 99.7 2.9E-17 6.2E-22 152.3 8.7 66 356-426 9-74 (392)
99 PRK14301 chaperone protein Dna 99.7 4.4E-17 9.5E-22 150.2 9.6 94 356-455 4-103 (373)
100 KOG0553|consensus 99.7 4.7E-16 1E-20 131.9 13.8 120 231-354 80-200 (304)
101 KOG3785|consensus 99.7 2.1E-13 4.6E-18 117.8 30.0 302 13-333 31-422 (557)
102 KOG1915|consensus 99.7 7.3E-12 1.6E-16 112.4 40.6 329 4-336 73-469 (677)
103 PRK14294 chaperone protein Dna 99.7 7.7E-17 1.7E-21 148.6 9.6 94 355-454 3-101 (366)
104 PRK14282 chaperone protein Dna 99.7 7.5E-17 1.6E-21 148.9 9.3 69 355-427 3-71 (369)
105 PRK14720 transcript cleavage f 99.7 1.7E-14 3.7E-19 143.4 26.3 249 32-336 25-309 (906)
106 PRK14276 chaperone protein Dna 99.7 6.2E-17 1.3E-21 149.8 8.6 67 356-428 4-70 (380)
107 PRK15359 type III secretion sy 99.7 1.9E-15 4.2E-20 120.7 15.9 116 3-118 23-138 (144)
108 PRK14297 chaperone protein Dna 99.7 1.1E-16 2.3E-21 148.5 9.7 68 356-428 4-71 (380)
109 PRK14298 chaperone protein Dna 99.7 1E-16 2.2E-21 147.9 8.8 94 356-456 5-103 (377)
110 PRK14295 chaperone protein Dna 99.7 1E-16 2.3E-21 148.4 8.1 65 356-425 9-73 (389)
111 PRK14280 chaperone protein Dna 99.7 1.3E-16 2.8E-21 147.5 8.4 95 356-456 4-104 (376)
112 KOG1130|consensus 99.7 9.4E-15 2E-19 128.4 18.1 284 5-334 18-345 (639)
113 PRK15359 type III secretion sy 99.7 3.8E-15 8.3E-20 119.0 14.5 94 239-336 31-124 (144)
114 PRK10767 chaperone protein Dna 99.7 4.1E-16 8.8E-21 144.5 9.8 96 355-456 3-104 (371)
115 PRK14281 chaperone protein Dna 99.7 4E-16 8.6E-21 145.2 9.8 68 356-428 3-70 (397)
116 KOG3785|consensus 99.7 1.8E-13 3.8E-18 118.3 25.0 299 7-327 60-451 (557)
117 PRK14284 chaperone protein Dna 99.6 3.6E-16 7.8E-21 145.4 8.8 67 357-428 2-68 (391)
118 PRK10370 formate-dependent nit 99.6 8.3E-14 1.8E-18 117.4 21.7 152 158-336 22-176 (198)
119 PRK14277 chaperone protein Dna 99.6 7E-16 1.5E-20 143.2 9.2 67 356-427 5-71 (386)
120 KOG1915|consensus 99.6 1.8E-10 4E-15 103.6 42.2 326 5-348 108-514 (677)
121 PRK14292 chaperone protein Dna 99.6 1.1E-15 2.5E-20 141.5 9.9 90 356-456 2-98 (371)
122 KOG2376|consensus 99.6 1.2E-11 2.7E-16 114.0 35.6 323 8-350 83-505 (652)
123 KOG3060|consensus 99.6 6.3E-13 1.4E-17 109.9 23.9 173 127-315 61-236 (289)
124 PF12569 NARP1: NMDA receptor- 99.6 1.7E-12 3.6E-17 124.0 30.0 272 37-334 3-292 (517)
125 PRK14291 chaperone protein Dna 99.6 1.6E-15 3.5E-20 140.6 9.1 67 356-428 3-69 (382)
126 PRK15179 Vi polysaccharide bio 99.6 1.2E-13 2.5E-18 136.7 22.4 182 169-372 69-252 (694)
127 PRK14283 chaperone protein Dna 99.6 1.2E-15 2.7E-20 141.3 8.0 67 355-427 4-70 (378)
128 KOG0718|consensus 99.6 1.3E-15 2.8E-20 135.3 7.2 72 355-428 8-79 (546)
129 PRK10370 formate-dependent nit 99.6 2.7E-13 5.9E-18 114.3 21.0 125 131-267 52-179 (198)
130 KOG0719|consensus 99.6 1.8E-15 4E-20 121.9 7.1 77 356-435 14-90 (264)
131 PRK14290 chaperone protein Dna 99.6 2.9E-15 6.2E-20 138.2 9.4 95 356-455 3-102 (365)
132 PF04733 Coatomer_E: Coatomer 99.6 8.2E-14 1.8E-18 124.2 17.9 267 12-347 9-279 (290)
133 TIGR02349 DnaJ_bact chaperone 99.6 3.2E-15 6.9E-20 138.0 8.9 93 357-456 1-102 (354)
134 PRK14300 chaperone protein Dna 99.6 3.3E-15 7.2E-20 138.0 8.5 66 356-427 3-68 (372)
135 PRK04841 transcriptional regul 99.6 1E-11 2.2E-16 131.5 36.0 321 5-336 410-763 (903)
136 KOG4340|consensus 99.6 2.8E-12 6E-17 108.5 25.0 297 13-327 19-333 (459)
137 PRK14720 transcript cleavage f 99.6 3.3E-13 7.2E-18 134.3 22.9 192 3-197 30-268 (906)
138 PHA03102 Small T antigen; Revi 99.6 4.7E-15 1E-19 115.4 7.5 87 354-456 3-91 (153)
139 COG3071 HemY Uncharacterized e 99.6 6.9E-11 1.5E-15 104.4 33.8 279 41-349 87-373 (400)
140 KOG1128|consensus 99.6 1.4E-12 3.1E-17 122.9 24.8 221 36-299 396-616 (777)
141 COG5010 TadD Flp pilus assembl 99.6 8.2E-13 1.8E-17 110.3 20.6 183 133-332 48-230 (257)
142 KOG3060|consensus 99.6 1.4E-11 3.1E-16 102.0 27.3 199 16-226 24-231 (289)
143 TIGR02552 LcrH_SycD type III s 99.6 2.1E-13 4.5E-18 108.8 16.0 126 207-348 4-130 (135)
144 PRK14293 chaperone protein Dna 99.6 8.7E-15 1.9E-19 135.5 9.2 93 356-455 3-97 (374)
145 PTZ00341 Ring-infected erythro 99.6 7E-15 1.5E-19 143.2 8.5 79 355-440 572-650 (1136)
146 COG5010 TadD Flp pilus assembl 99.6 1.7E-12 3.8E-17 108.4 20.9 182 19-213 48-229 (257)
147 PRK15179 Vi polysaccharide bio 99.5 1.1E-12 2.3E-17 130.0 22.9 154 137-306 71-224 (694)
148 PRK15363 pathogenicity island 99.5 3.1E-13 6.8E-18 105.4 14.9 105 3-107 34-138 (157)
149 KOG0691|consensus 99.5 9E-15 1.9E-19 126.8 6.6 91 355-456 4-94 (296)
150 PRK14289 chaperone protein Dna 99.5 2.4E-14 5.3E-19 133.3 9.2 68 356-428 5-72 (386)
151 PRK10266 curved DNA-binding pr 99.5 2.1E-14 4.7E-19 129.2 8.2 65 356-426 4-68 (306)
152 KOG1128|consensus 99.5 9.5E-12 2.1E-16 117.5 25.6 220 6-264 400-619 (777)
153 KOG0715|consensus 99.5 1.6E-14 3.6E-19 127.0 6.9 86 357-455 44-129 (288)
154 KOG0717|consensus 99.5 2.4E-14 5.2E-19 127.4 7.2 71 354-428 6-76 (508)
155 PRK10866 outer membrane biogen 99.5 1.7E-11 3.6E-16 106.8 24.4 180 3-211 31-237 (243)
156 PLN03088 SGT1, suppressor of 99.5 6.1E-13 1.3E-17 123.1 16.2 113 4-116 2-114 (356)
157 KOG4648|consensus 99.5 1.2E-14 2.6E-19 124.9 4.3 220 5-225 98-340 (536)
158 TIGR02552 LcrH_SycD type III s 99.5 1.2E-12 2.7E-17 104.3 15.4 117 25-153 4-120 (135)
159 PF00226 DnaJ: DnaJ domain; I 99.5 4.7E-14 1E-18 95.4 6.0 64 357-424 1-64 (64)
160 PRK15363 pathogenicity island 99.5 2.5E-12 5.3E-17 100.5 15.5 94 239-336 42-135 (157)
161 PF13525 YfiO: Outer membrane 99.5 1.3E-11 2.7E-16 105.1 21.4 175 1-204 2-196 (203)
162 KOG1130|consensus 99.4 2.6E-12 5.7E-17 113.3 14.0 286 5-322 56-373 (639)
163 COG4783 Putative Zn-dependent 99.4 8.7E-11 1.9E-15 106.6 23.8 104 123-226 311-414 (484)
164 KOG0716|consensus 99.4 1.8E-13 4E-18 113.8 5.8 69 355-428 30-98 (279)
165 KOG4234|consensus 99.4 4.8E-12 1E-16 100.7 13.4 107 230-336 93-200 (271)
166 PF14938 SNAP: Soluble NSF att 99.4 4.7E-10 1E-14 100.9 27.8 174 128-335 84-268 (282)
167 PRK10866 outer membrane biogen 99.4 2E-10 4.3E-15 100.1 24.3 172 121-293 35-235 (243)
168 COG4783 Putative Zn-dependent 99.4 7.2E-11 1.6E-15 107.2 21.1 153 183-351 303-456 (484)
169 KOG0543|consensus 99.4 8.5E-12 1.8E-16 110.9 14.7 125 228-352 204-340 (397)
170 KOG4234|consensus 99.4 9.2E-12 2E-16 99.1 13.3 114 3-116 94-212 (271)
171 PLN03088 SGT1, suppressor of 99.4 1.2E-11 2.6E-16 114.6 16.0 113 236-352 6-119 (356)
172 KOG4340|consensus 99.4 5.3E-10 1.2E-14 94.9 23.3 161 5-179 45-205 (459)
173 PF13525 YfiO: Outer membrane 99.4 2E-10 4.2E-15 97.9 20.9 167 121-288 8-196 (203)
174 KOG0543|consensus 99.4 2.4E-11 5.2E-16 108.1 15.5 118 4-121 208-340 (397)
175 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.9E-11 4E-16 95.2 13.4 106 4-109 2-113 (119)
176 KOG2047|consensus 99.3 1.2E-07 2.6E-12 89.0 38.4 311 17-336 151-582 (835)
177 PF13414 TPR_11: TPR repeat; P 99.3 6E-12 1.3E-16 87.0 7.7 68 2-69 1-69 (69)
178 PRK04841 transcriptional regul 99.3 1.2E-08 2.6E-13 108.2 36.4 314 7-334 377-721 (903)
179 PF04733 Coatomer_E: Coatomer 99.3 1.2E-10 2.5E-15 104.0 16.8 190 19-225 81-275 (290)
180 TIGR03835 termin_org_DnaJ term 99.3 7.4E-12 1.6E-16 119.6 9.2 66 356-427 2-67 (871)
181 KOG2047|consensus 99.3 3.9E-07 8.4E-12 85.7 38.4 303 6-336 250-618 (835)
182 smart00271 DnaJ DnaJ molecular 99.3 1.3E-11 2.8E-16 82.4 6.7 59 357-419 2-60 (60)
183 PRK05014 hscB co-chaperone Hsc 99.3 2.8E-11 6E-16 98.2 9.6 69 357-425 2-72 (171)
184 KOG1941|consensus 99.3 3.3E-09 7.2E-14 92.5 21.7 317 3-368 5-350 (518)
185 cd00189 TPR Tetratricopeptide 99.2 1.3E-10 2.8E-15 86.3 11.6 99 6-104 2-100 (100)
186 PF13414 TPR_11: TPR repeat; P 99.2 4.3E-11 9.2E-16 82.7 7.9 67 269-335 2-69 (69)
187 PRK01356 hscB co-chaperone Hsc 99.2 6.5E-11 1.4E-15 95.3 9.7 68 356-425 2-71 (166)
188 PF12895 Apc3: Anaphase-promot 99.2 3.1E-11 6.7E-16 86.9 6.8 82 16-98 1-84 (84)
189 KOG4648|consensus 99.2 7.3E-12 1.6E-16 108.0 4.1 210 122-336 101-333 (536)
190 cd06257 DnaJ DnaJ domain or J- 99.2 3.9E-11 8.4E-16 78.5 6.7 55 357-416 1-55 (55)
191 PRK02603 photosystem I assembl 99.2 6.9E-10 1.5E-14 92.1 15.6 82 36-117 33-117 (172)
192 PRK15331 chaperone protein Sic 99.2 3.1E-10 6.6E-15 89.2 12.5 105 3-108 36-140 (165)
193 PF12895 Apc3: Anaphase-promot 99.2 7.1E-11 1.5E-15 85.0 8.2 83 245-330 2-84 (84)
194 PRK03578 hscB co-chaperone Hsc 99.2 1E-10 2.3E-15 94.9 9.7 75 355-429 5-84 (176)
195 PF14938 SNAP: Soluble NSF att 99.2 5.3E-09 1.2E-13 94.1 21.6 195 158-359 41-254 (282)
196 COG4235 Cytochrome c biogenesi 99.2 1.7E-09 3.6E-14 93.3 17.2 123 133-267 137-262 (287)
197 KOG0721|consensus 99.2 5.2E-11 1.1E-15 95.8 7.3 73 357-434 100-172 (230)
198 PF13432 TPR_16: Tetratricopep 99.2 1.4E-10 3E-15 79.0 8.0 65 8-72 1-65 (65)
199 TIGR02795 tol_pal_ybgF tol-pal 99.2 9.2E-10 2E-14 85.5 13.7 97 239-336 9-108 (119)
200 KOG3081|consensus 99.2 1.3E-07 2.8E-12 79.5 26.6 175 153-346 109-284 (299)
201 PF09976 TPR_21: Tetratricopep 99.2 4.9E-09 1.1E-13 84.2 17.9 126 121-259 14-145 (145)
202 PRK10803 tol-pal system protei 99.2 1.4E-09 2.9E-14 95.4 15.3 106 4-109 142-254 (263)
203 COG4785 NlpI Lipoprotein NlpI, 99.2 4E-09 8.6E-14 85.5 16.3 105 3-107 64-168 (297)
204 COG4105 ComL DNA uptake lipopr 99.1 6.4E-08 1.4E-12 81.8 24.0 189 3-220 33-238 (254)
205 COG4235 Cytochrome c biogenesi 99.1 3.5E-09 7.6E-14 91.3 16.8 121 201-337 137-260 (287)
206 PF09976 TPR_21: Tetratricopep 99.1 4E-09 8.6E-14 84.8 16.1 123 198-331 23-145 (145)
207 COG0457 NrfG FOG: TPR repeat [ 99.1 8.6E-07 1.9E-11 78.0 32.7 49 52-100 37-87 (291)
208 PRK11906 transcriptional regul 99.1 7.2E-09 1.6E-13 94.9 19.0 160 7-212 258-433 (458)
209 CHL00033 ycf3 photosystem I as 99.1 3.6E-09 7.7E-14 87.6 15.6 123 201-336 14-152 (168)
210 CHL00033 ycf3 photosystem I as 99.1 1.7E-09 3.8E-14 89.4 13.3 104 3-106 34-154 (168)
211 PRK00294 hscB co-chaperone Hsc 99.1 2.1E-10 4.6E-15 92.6 7.5 71 355-425 3-75 (173)
212 PRK02603 photosystem I assembl 99.1 2.7E-09 5.9E-14 88.6 14.4 98 238-336 41-152 (172)
213 COG0457 NrfG FOG: TPR repeat [ 99.1 6E-07 1.3E-11 79.0 30.8 225 17-264 36-268 (291)
214 PF13432 TPR_16: Tetratricopep 99.1 3.7E-10 8E-15 76.9 7.4 65 42-106 1-65 (65)
215 COG4785 NlpI Lipoprotein NlpI, 99.1 1.7E-08 3.6E-13 82.0 17.6 198 73-300 66-267 (297)
216 KOG0722|consensus 99.1 6E-11 1.3E-15 97.3 3.7 67 356-428 33-99 (329)
217 cd00189 TPR Tetratricopeptide 99.1 2.5E-09 5.4E-14 79.2 12.1 96 237-336 5-100 (100)
218 PHA02624 large T antigen; Prov 99.1 3E-10 6.4E-15 107.6 7.9 63 352-423 7-71 (647)
219 PF13512 TPR_18: Tetratricopep 99.1 7.2E-09 1.6E-13 79.7 13.5 107 2-108 8-135 (142)
220 COG1729 Uncharacterized protei 99.0 7.6E-09 1.7E-13 88.2 14.6 105 5-109 142-252 (262)
221 PRK15331 chaperone protein Sic 99.0 6.7E-09 1.4E-13 81.7 13.2 91 239-333 44-134 (165)
222 COG4105 ComL DNA uptake lipopr 99.0 3E-07 6.4E-12 77.8 23.6 171 121-292 37-226 (254)
223 PRK10153 DNA-binding transcrip 99.0 1.6E-08 3.4E-13 97.7 18.4 130 88-222 358-489 (517)
224 KOG0714|consensus 99.0 4.7E-10 1E-14 103.2 7.7 69 356-428 3-71 (306)
225 COG2214 CbpA DnaJ-class molecu 99.0 4.2E-10 9.1E-15 99.2 6.9 69 354-426 4-72 (237)
226 PRK10153 DNA-binding transcrip 99.0 3.4E-08 7.4E-13 95.4 20.1 87 248-339 400-488 (517)
227 KOG1070|consensus 99.0 3.9E-07 8.5E-12 92.7 27.8 220 52-300 1438-1664(1710)
228 PRK11906 transcriptional regul 99.0 3.1E-08 6.8E-13 90.9 18.2 164 156-335 259-438 (458)
229 COG3898 Uncharacterized membra 99.0 5E-06 1.1E-10 73.9 30.4 145 167-333 244-392 (531)
230 KOG4642|consensus 99.0 1.1E-09 2.3E-14 90.1 7.4 100 3-102 9-108 (284)
231 KOG1941|consensus 99.0 2.2E-07 4.8E-12 81.4 20.9 178 153-336 84-278 (518)
232 PRK10803 tol-pal system protei 99.0 2.2E-08 4.8E-13 87.9 15.2 107 120-226 144-257 (263)
233 KOG0720|consensus 99.0 8.3E-10 1.8E-14 99.1 5.9 68 353-426 232-299 (490)
234 KOG4555|consensus 99.0 5.4E-08 1.2E-12 72.2 13.9 100 5-104 44-147 (175)
235 PF14559 TPR_19: Tetratricopep 98.9 2.2E-09 4.8E-14 73.8 6.3 65 15-79 2-66 (68)
236 KOG3081|consensus 98.9 1.3E-06 2.9E-11 73.6 23.5 262 6-306 11-278 (299)
237 KOG0551|consensus 98.9 2E-08 4.2E-13 86.9 13.0 104 233-336 82-185 (390)
238 KOG2053|consensus 98.9 4E-05 8.7E-10 75.4 36.8 206 13-219 18-259 (932)
239 KOG0545|consensus 98.9 4.1E-08 8.9E-13 81.2 13.4 118 232-349 178-311 (329)
240 PF12688 TPR_5: Tetratrico pep 98.9 4.8E-08 1E-12 74.2 12.9 97 4-100 1-103 (120)
241 PF14559 TPR_19: Tetratricopep 98.9 5.1E-09 1.1E-13 72.0 6.9 67 48-114 1-67 (68)
242 KOG0376|consensus 98.9 3.9E-09 8.4E-14 96.1 7.7 116 2-117 2-117 (476)
243 PRK09430 djlA Dna-J like membr 98.9 1.6E-08 3.5E-13 88.7 11.4 64 354-417 198-263 (267)
244 KOG1070|consensus 98.9 2.1E-06 4.5E-11 87.7 27.0 216 22-262 1442-1664(1710)
245 COG3898 Uncharacterized membra 98.9 2.4E-05 5.1E-10 69.8 30.4 273 11-345 91-370 (531)
246 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 7.6E-08 1.7E-12 88.9 15.7 120 192-330 175-294 (395)
247 KOG2300|consensus 98.9 6E-05 1.3E-09 69.1 37.8 196 132-339 289-521 (629)
248 PTZ00100 DnaJ chaperone protei 98.9 4.3E-09 9.3E-14 77.5 5.9 52 355-415 64-115 (116)
249 KOG1308|consensus 98.9 6.4E-09 1.4E-13 90.3 7.8 111 236-350 118-228 (377)
250 KOG3617|consensus 98.9 1.1E-05 2.4E-10 78.3 30.0 296 16-330 740-1171(1416)
251 PF13371 TPR_9: Tetratricopept 98.9 1.3E-08 2.9E-13 71.0 8.2 69 11-79 2-70 (73)
252 COG1729 Uncharacterized protei 98.9 8.5E-08 1.8E-12 81.9 14.3 101 238-339 147-250 (262)
253 KOG4642|consensus 98.9 1.4E-08 3E-13 83.7 8.8 112 233-348 11-128 (284)
254 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.4E-07 3.1E-12 87.1 16.3 122 156-296 173-294 (395)
255 COG5407 SEC63 Preprotein trans 98.8 6.2E-09 1.3E-13 93.0 6.2 77 357-433 99-175 (610)
256 PF13371 TPR_9: Tetratricopept 98.8 2.9E-08 6.3E-13 69.3 8.1 68 45-112 2-69 (73)
257 KOG0551|consensus 98.8 2.8E-08 6.2E-13 85.9 9.5 106 2-107 79-188 (390)
258 KOG2471|consensus 98.8 1.5E-06 3.3E-11 79.2 20.2 320 3-331 239-682 (696)
259 PF13512 TPR_18: Tetratricopep 98.8 2.8E-07 6.2E-12 71.0 13.4 101 237-338 15-133 (142)
260 COG4700 Uncharacterized protei 98.8 2.5E-06 5.5E-11 67.9 18.8 169 167-351 71-246 (251)
261 KOG2053|consensus 98.8 3.5E-05 7.6E-10 75.8 30.2 227 49-303 20-259 (932)
262 KOG4555|consensus 98.8 3.8E-07 8.2E-12 67.8 13.1 94 239-336 50-147 (175)
263 KOG2471|consensus 98.8 2.1E-06 4.6E-11 78.3 20.2 290 6-317 19-382 (696)
264 PF12688 TPR_5: Tetratrico pep 98.8 4.1E-07 9E-12 69.1 13.5 96 236-332 5-103 (120)
265 TIGR00714 hscB Fe-S protein as 98.7 2.3E-08 5E-13 80.0 6.7 58 368-425 3-60 (157)
266 KOG0545|consensus 98.7 3.5E-07 7.6E-12 75.8 13.3 106 3-108 177-300 (329)
267 KOG2796|consensus 98.7 2.7E-05 5.9E-10 65.7 24.0 139 154-336 179-318 (366)
268 KOG2796|consensus 98.7 7.1E-06 1.5E-10 69.1 19.7 205 71-336 68-284 (366)
269 PF06552 TOM20_plant: Plant sp 98.7 3.6E-07 7.8E-12 72.7 11.2 95 20-114 7-122 (186)
270 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1.1E-07 2.4E-12 87.2 9.4 70 33-102 70-142 (453)
271 PF10300 DUF3808: Protein of u 98.6 3.6E-05 7.7E-10 74.2 26.2 165 158-335 194-378 (468)
272 KOG1586|consensus 98.6 2.7E-05 6E-10 64.5 21.1 185 18-224 28-233 (288)
273 KOG0376|consensus 98.6 6.9E-08 1.5E-12 88.2 6.6 113 236-352 8-121 (476)
274 PRK01773 hscB co-chaperone Hsc 98.6 1.5E-07 3.3E-12 76.2 7.7 70 356-425 2-73 (173)
275 PF13424 TPR_12: Tetratricopep 98.6 1E-07 2.2E-12 67.4 5.9 65 269-333 4-75 (78)
276 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 3.2E-07 7E-12 84.2 9.6 65 269-333 74-141 (453)
277 COG4700 Uncharacterized protei 98.6 1.4E-05 3E-10 63.7 17.0 147 133-297 71-220 (251)
278 PF13424 TPR_12: Tetratricopep 98.5 1.1E-07 2.4E-12 67.3 4.6 65 36-100 3-74 (78)
279 KOG4507|consensus 98.5 9.8E-06 2.1E-10 75.7 18.0 107 239-348 614-721 (886)
280 KOG1586|consensus 98.5 6.6E-05 1.4E-09 62.3 20.0 184 132-336 28-227 (288)
281 COG5269 ZUO1 Ribosome-associat 98.5 5.5E-07 1.2E-11 75.1 7.3 74 355-431 42-118 (379)
282 KOG3617|consensus 98.5 3.9E-05 8.5E-10 74.7 20.6 238 48-334 738-997 (1416)
283 KOG2610|consensus 98.4 9.9E-05 2.1E-09 64.6 20.5 165 121-297 106-274 (491)
284 PF06552 TOM20_plant: Plant sp 98.4 2.8E-06 6E-11 67.7 9.9 88 248-339 7-115 (186)
285 KOG1914|consensus 98.4 0.0021 4.6E-08 60.2 30.0 325 3-333 19-464 (656)
286 KOG1585|consensus 98.4 0.00016 3.5E-09 60.5 19.6 199 38-256 31-251 (308)
287 PF10345 Cohesin_load: Cohesin 98.4 0.0041 8.9E-08 62.7 34.1 310 3-321 58-466 (608)
288 KOG1308|consensus 98.3 2.7E-07 5.8E-12 80.5 3.0 100 5-104 115-214 (377)
289 PF02259 FAT: FAT domain; Int 98.3 0.0018 3.9E-08 60.8 28.6 168 150-336 144-341 (352)
290 KOG1585|consensus 98.3 0.00048 1E-08 57.7 20.3 213 72-327 31-250 (308)
291 PF13428 TPR_14: Tetratricopep 98.2 3.1E-06 6.8E-11 51.9 5.1 40 40-79 3-42 (44)
292 PF13281 DUF4071: Domain of un 98.2 0.0014 3.1E-08 60.0 23.2 178 151-336 140-337 (374)
293 PF13428 TPR_14: Tetratricopep 98.2 5.2E-06 1.1E-10 50.9 5.2 43 271-313 2-44 (44)
294 PF10345 Cohesin_load: Cohesin 98.2 0.011 2.5E-07 59.6 33.7 322 20-350 37-460 (608)
295 KOG1550|consensus 98.2 0.0037 8E-08 62.0 27.7 284 19-336 227-541 (552)
296 KOG1150|consensus 98.2 1.1E-05 2.4E-10 64.2 8.0 66 356-425 53-118 (250)
297 PF05843 Suf: Suppressor of fo 98.1 0.00013 2.7E-09 65.6 15.7 136 154-302 3-139 (280)
298 PF03704 BTAD: Bacterial trans 98.1 0.00035 7.6E-09 56.1 16.6 95 238-332 12-124 (146)
299 PF04184 ST7: ST7 protein; In 98.1 0.0005 1.1E-08 63.9 19.0 190 11-215 175-414 (539)
300 PF13431 TPR_17: Tetratricopep 98.1 3.2E-06 7E-11 48.2 3.2 32 293-324 2-33 (34)
301 PF04184 ST7: ST7 protein; In 98.1 0.00053 1.1E-08 63.7 18.9 96 239-336 266-378 (539)
302 PF08631 SPO22: Meiosis protei 98.1 0.0064 1.4E-07 54.7 25.6 233 83-331 4-273 (278)
303 PF13431 TPR_17: Tetratricopep 98.1 3.6E-06 7.9E-11 48.0 3.0 32 61-92 2-33 (34)
304 KOG2300|consensus 98.1 0.009 2E-07 55.4 32.0 324 38-366 7-431 (629)
305 KOG1258|consensus 98.1 0.012 2.6E-07 56.3 31.6 56 21-76 62-117 (577)
306 KOG0530|consensus 98.1 0.002 4.4E-08 54.7 19.9 167 134-316 59-233 (318)
307 KOG2610|consensus 98.1 0.00095 2.1E-08 58.7 18.4 159 157-331 108-274 (491)
308 PF05843 Suf: Suppressor of fo 98.0 0.00027 6E-09 63.4 15.6 138 74-223 3-144 (280)
309 COG2909 MalT ATP-dependent tra 98.0 0.013 2.9E-07 58.6 27.2 246 3-259 414-686 (894)
310 PF00515 TPR_1: Tetratricopept 98.0 1.4E-05 3.1E-10 45.8 4.4 32 5-36 2-33 (34)
311 PF13281 DUF4071: Domain of un 98.0 0.0057 1.2E-07 56.2 23.0 186 37-226 140-345 (374)
312 COG2976 Uncharacterized protei 98.0 0.002 4.3E-08 52.4 17.6 105 237-343 94-198 (207)
313 PF03704 BTAD: Bacterial trans 98.0 0.00029 6.2E-09 56.7 13.1 95 6-100 8-124 (146)
314 PF00515 TPR_1: Tetratricopept 98.0 1.9E-05 4.1E-10 45.3 4.5 31 272-302 3-33 (34)
315 KOG3616|consensus 98.0 0.0043 9.4E-08 60.3 22.4 33 302-334 993-1025(1636)
316 PF02259 FAT: FAT domain; Int 97.9 0.018 3.9E-07 54.0 29.8 270 11-302 5-341 (352)
317 PF07719 TPR_2: Tetratricopept 97.9 2.2E-05 4.8E-10 45.0 4.4 32 5-36 2-33 (34)
318 PF10300 DUF3808: Protein of u 97.9 0.00099 2.1E-08 64.4 18.1 162 84-261 200-376 (468)
319 COG3118 Thioredoxin domain-con 97.9 0.0013 2.9E-08 57.1 16.7 151 38-200 134-286 (304)
320 KOG0530|consensus 97.9 0.012 2.7E-07 50.1 22.3 182 15-196 54-269 (318)
321 PF07079 DUF1347: Protein of u 97.9 0.022 4.8E-07 52.5 34.9 141 7-147 9-157 (549)
322 PF07719 TPR_2: Tetratricopept 97.9 4.7E-05 1E-09 43.6 5.1 31 272-302 3-33 (34)
323 KOG0985|consensus 97.8 0.026 5.6E-07 57.2 26.2 238 10-295 1054-1337(1666)
324 KOG4507|consensus 97.8 0.0056 1.2E-07 58.0 20.4 99 8-106 217-317 (886)
325 KOG0985|consensus 97.8 0.015 3.3E-07 58.8 23.9 244 16-290 1087-1374(1666)
326 PF08631 SPO22: Meiosis protei 97.8 0.029 6.2E-07 50.5 25.8 155 133-297 102-273 (278)
327 COG3118 Thioredoxin domain-con 97.7 0.0029 6.2E-08 55.1 16.0 53 125-177 141-193 (304)
328 KOG3783|consensus 97.7 0.011 2.3E-07 55.8 19.8 252 21-303 250-524 (546)
329 COG2976 Uncharacterized protei 97.6 0.0061 1.3E-07 49.7 15.2 95 156-264 93-191 (207)
330 PF07079 DUF1347: Protein of u 97.6 0.055 1.2E-06 50.1 32.2 122 193-330 386-521 (549)
331 PF08424 NRDE-2: NRDE-2, neces 97.5 0.0083 1.8E-07 55.1 17.1 135 134-300 47-184 (321)
332 PF08424 NRDE-2: NRDE-2, neces 97.5 0.017 3.6E-07 53.1 19.0 167 139-334 6-184 (321)
333 PF12968 DUF3856: Domain of Un 97.5 0.013 2.8E-07 43.3 14.3 95 239-333 16-129 (144)
334 KOG0890|consensus 97.5 0.25 5.5E-06 55.2 29.4 302 9-334 1388-1732(2382)
335 KOG1310|consensus 97.5 0.00039 8.4E-09 64.7 7.6 105 3-107 373-480 (758)
336 COG2909 MalT ATP-dependent tra 97.5 0.15 3.3E-06 51.4 28.0 204 123-336 420-650 (894)
337 KOG1464|consensus 97.4 0.035 7.7E-07 47.6 18.0 234 51-318 40-286 (440)
338 PF13181 TPR_8: Tetratricopept 97.4 0.00031 6.8E-09 40.1 4.2 30 272-301 3-32 (34)
339 KOG3616|consensus 97.4 0.16 3.5E-06 50.0 30.7 111 271-391 766-883 (1636)
340 PF04910 Tcf25: Transcriptiona 97.4 0.039 8.4E-07 51.4 19.5 37 143-179 31-67 (360)
341 KOG0890|consensus 97.3 0.33 7.1E-06 54.3 28.1 291 8-314 1453-1799(2382)
342 PF13181 TPR_8: Tetratricopept 97.3 0.00034 7.4E-09 39.9 3.7 30 40-69 3-32 (34)
343 PRK13184 pknD serine/threonine 97.3 0.28 6.1E-06 51.3 31.6 100 10-110 481-590 (932)
344 PRK10941 hypothetical protein; 97.3 0.0032 6.9E-08 55.5 11.1 82 269-350 180-261 (269)
345 PRK15180 Vi polysaccharide bio 97.3 0.15 3.3E-06 47.6 27.3 105 245-350 711-823 (831)
346 PF04781 DUF627: Protein of un 97.3 0.003 6.5E-08 46.4 8.8 92 10-101 2-107 (111)
347 KOG1550|consensus 97.2 0.18 4E-06 50.2 23.7 265 4-303 244-542 (552)
348 PF09986 DUF2225: Uncharacteri 97.2 0.0093 2E-07 50.9 12.5 95 243-337 88-198 (214)
349 PF04910 Tcf25: Transcriptiona 97.2 0.024 5.2E-07 52.7 15.9 78 31-108 33-140 (360)
350 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.21 4.6E-06 46.3 21.6 71 26-99 290-360 (660)
351 COG0790 FOG: TPR repeat, SEL1 97.1 0.19 4.2E-06 45.6 21.8 174 13-200 50-236 (292)
352 KOG0568|consensus 97.1 0.00066 1.4E-08 55.6 4.4 58 354-417 45-103 (342)
353 PF13174 TPR_6: Tetratricopept 97.1 0.00073 1.6E-08 38.2 3.5 31 6-36 2-32 (33)
354 PF09613 HrpB1_HrpK: Bacterial 97.1 0.014 3E-07 46.3 11.3 86 4-89 10-95 (160)
355 PF04781 DUF627: Protein of un 97.1 0.0081 1.8E-07 44.2 9.2 95 239-334 3-108 (111)
356 PF14561 TPR_20: Tetratricopep 97.0 0.011 2.3E-07 42.5 9.3 67 23-89 7-75 (90)
357 PF13174 TPR_6: Tetratricopept 97.0 0.0014 3E-08 36.9 3.9 31 306-336 2-32 (33)
358 PRK10941 hypothetical protein; 97.0 0.011 2.5E-07 52.1 11.1 77 154-230 183-259 (269)
359 KOG1914|consensus 97.0 0.37 8E-06 45.9 30.2 226 95-335 268-503 (656)
360 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0078 1.7E-07 38.0 7.1 39 74-112 3-41 (53)
361 KOG0723|consensus 96.9 0.0026 5.7E-08 45.4 5.3 56 354-418 54-109 (112)
362 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0087 1.9E-07 37.8 7.0 35 273-307 4-38 (53)
363 PF13176 TPR_7: Tetratricopept 96.9 0.0021 4.5E-08 37.2 3.9 29 306-334 1-29 (36)
364 COG0790 FOG: TPR repeat, SEL1 96.9 0.35 7.5E-06 44.0 25.1 182 130-336 53-269 (292)
365 KOG1310|consensus 96.8 0.0054 1.2E-07 57.4 8.3 103 230-336 372-477 (758)
366 KOG3824|consensus 96.8 0.0042 9.2E-08 54.0 7.0 76 40-115 118-193 (472)
367 KOG3824|consensus 96.8 0.0077 1.7E-07 52.5 8.4 79 117-195 115-193 (472)
368 KOG2041|consensus 96.8 0.59 1.3E-05 46.0 23.2 228 64-330 685-936 (1189)
369 PF12968 DUF3856: Domain of Un 96.8 0.02 4.3E-07 42.4 9.1 92 9-100 14-128 (144)
370 KOG2041|consensus 96.7 0.67 1.5E-05 45.6 26.3 167 20-211 679-877 (1189)
371 KOG1463|consensus 96.7 0.44 9.5E-06 42.6 24.5 169 156-336 132-319 (411)
372 KOG2396|consensus 96.7 0.064 1.4E-06 50.3 13.8 95 135-229 88-183 (568)
373 PF13176 TPR_7: Tetratricopept 96.7 0.0043 9.3E-08 35.8 4.1 27 273-299 2-28 (36)
374 PF09613 HrpB1_HrpK: Bacterial 96.6 0.046 9.9E-07 43.5 11.0 94 123-217 15-108 (160)
375 KOG2396|consensus 96.6 0.67 1.5E-05 43.8 32.6 92 23-114 90-182 (568)
376 PRK11619 lytic murein transgly 96.6 1 2.2E-05 45.7 31.8 80 248-332 295-374 (644)
377 KOG1538|consensus 96.6 0.18 4E-06 48.8 16.4 183 76-296 636-830 (1081)
378 KOG1789|consensus 96.6 0.0034 7.5E-08 63.4 5.4 56 355-418 1280-1339(2235)
379 PF14561 TPR_20: Tetratricopep 96.5 0.051 1.1E-06 39.0 9.9 49 137-185 7-55 (90)
380 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.7 1.5E-05 43.1 32.6 187 140-333 290-495 (660)
381 COG4649 Uncharacterized protei 96.5 0.32 7E-06 39.1 16.6 144 44-196 64-210 (221)
382 KOG0529|consensus 96.4 0.74 1.6E-05 42.5 23.1 316 13-336 37-405 (421)
383 TIGR02561 HrpB1_HrpK type III 96.4 0.065 1.4E-06 41.8 10.3 84 6-89 12-95 (153)
384 KOG2581|consensus 96.4 0.42 9E-06 43.8 16.6 63 240-302 217-279 (493)
385 smart00028 TPR Tetratricopepti 96.3 0.0076 1.6E-07 33.3 4.0 27 42-68 5-31 (34)
386 PRK15180 Vi polysaccharide bio 96.3 0.07 1.5E-06 49.7 11.7 125 128-264 299-423 (831)
387 smart00028 TPR Tetratricopepti 96.3 0.0074 1.6E-07 33.3 3.7 32 5-36 2-33 (34)
388 PF15015 NYD-SP12_N: Spermatog 96.3 0.047 1E-06 49.9 10.1 95 238-332 182-290 (569)
389 KOG3192|consensus 96.2 0.0083 1.8E-07 46.3 4.3 73 353-425 5-79 (168)
390 KOG3364|consensus 96.2 0.14 3E-06 39.2 10.6 79 151-229 31-114 (149)
391 KOG4814|consensus 96.1 1.5 3.2E-05 42.9 22.5 95 7-101 357-457 (872)
392 TIGR02561 HrpB1_HrpK type III 96.1 0.1 2.2E-06 40.8 9.9 79 125-203 17-95 (153)
393 KOG1538|consensus 96.1 1.2 2.6E-05 43.5 18.9 225 6-258 587-843 (1081)
394 PF10602 RPN7: 26S proteasome 96.1 0.12 2.7E-06 42.7 11.3 104 153-262 37-143 (177)
395 KOG3783|consensus 96.0 1.5 3.2E-05 42.0 27.3 71 269-339 448-526 (546)
396 PF10602 RPN7: 26S proteasome 96.0 0.2 4.4E-06 41.4 12.1 102 233-335 37-144 (177)
397 KOG4814|consensus 96.0 1.8 3.8E-05 42.4 20.7 101 236-336 358-460 (872)
398 PF15015 NYD-SP12_N: Spermatog 96.0 0.051 1.1E-06 49.7 8.9 91 8-98 180-288 (569)
399 COG4649 Uncharacterized protei 95.9 0.7 1.5E-05 37.2 16.4 142 162-315 68-211 (221)
400 COG3914 Spy Predicted O-linked 95.9 0.82 1.8E-05 44.2 16.8 122 137-264 50-174 (620)
401 PF10579 Rapsyn_N: Rapsyn N-te 95.9 0.13 2.8E-06 35.2 8.5 65 234-299 8-72 (80)
402 KOG3364|consensus 95.9 0.33 7.2E-06 37.2 11.5 79 37-115 31-114 (149)
403 PF10579 Rapsyn_N: Rapsyn N-te 95.8 0.11 2.4E-06 35.5 7.8 65 3-67 5-72 (80)
404 COG4976 Predicted methyltransf 95.7 0.024 5.1E-07 47.4 5.3 56 281-336 6-61 (287)
405 PRK13184 pknD serine/threonine 95.7 3.4 7.4E-05 43.5 22.4 138 79-219 482-624 (932)
406 COG3914 Spy Predicted O-linked 95.7 0.93 2E-05 43.8 16.3 144 16-165 42-189 (620)
407 KOG1258|consensus 95.6 2.4 5.1E-05 41.3 29.7 61 55-115 62-122 (577)
408 COG4976 Predicted methyltransf 95.6 0.022 4.7E-07 47.7 4.9 58 49-106 6-63 (287)
409 COG2912 Uncharacterized conser 95.5 0.11 2.4E-06 45.1 8.9 83 269-351 180-262 (269)
410 COG5159 RPN6 26S proteasome re 95.4 1.6 3.5E-05 38.2 25.7 282 8-335 7-316 (421)
411 KOG2422|consensus 95.3 1.5 3.3E-05 42.3 16.3 141 145-302 277-451 (665)
412 KOG2422|consensus 95.3 2 4.4E-05 41.5 17.0 100 17-116 251-387 (665)
413 KOG0546|consensus 95.2 0.034 7.5E-07 49.7 5.1 114 237-350 227-356 (372)
414 KOG4151|consensus 95.2 0.15 3.2E-06 50.8 9.6 113 236-348 57-172 (748)
415 KOG0431|consensus 95.1 0.066 1.4E-06 51.1 7.0 75 337-414 372-448 (453)
416 PF09986 DUF2225: Uncharacteri 95.1 1.1 2.3E-05 38.4 13.7 74 239-312 125-208 (214)
417 KOG0546|consensus 95.0 0.058 1.2E-06 48.3 5.9 112 5-116 223-353 (372)
418 KOG1464|consensus 95.0 2.2 4.9E-05 37.0 18.2 224 17-284 40-286 (440)
419 KOG1839|consensus 94.9 0.33 7.1E-06 51.3 11.6 166 156-334 936-1129(1236)
420 COG5191 Uncharacterized conser 94.9 0.08 1.7E-06 46.5 6.1 90 140-229 95-185 (435)
421 PF13374 TPR_10: Tetratricopep 94.8 0.079 1.7E-06 31.5 4.6 29 271-299 3-31 (42)
422 PF12862 Apc5: Anaphase-promot 94.8 0.35 7.5E-06 35.2 8.7 59 241-299 7-70 (94)
423 PF12862 Apc5: Anaphase-promot 94.8 0.21 4.6E-06 36.3 7.5 67 280-346 8-83 (94)
424 COG5191 Uncharacterized conser 94.7 0.079 1.7E-06 46.5 5.8 89 27-115 96-185 (435)
425 PF13374 TPR_10: Tetratricopep 94.6 0.083 1.8E-06 31.4 4.3 31 304-334 2-32 (42)
426 PF04190 DUF410: Protein of un 94.6 3.1 6.8E-05 36.9 19.9 78 104-181 88-170 (260)
427 KOG1839|consensus 94.6 0.42 9E-06 50.5 11.4 173 3-213 931-1126(1236)
428 COG5159 RPN6 26S proteasome re 94.6 3 6.5E-05 36.6 18.3 209 122-336 7-238 (421)
429 COG2912 Uncharacterized conser 94.5 0.35 7.5E-06 42.2 9.2 71 156-226 185-255 (269)
430 PF04053 Coatomer_WDAD: Coatom 94.5 5 0.00011 38.7 19.0 156 128-330 271-428 (443)
431 COG3629 DnrI DNA-binding trans 94.4 0.53 1.2E-05 41.6 10.4 65 269-333 152-216 (280)
432 KOG0529|consensus 94.3 1.8 3.9E-05 40.1 13.5 134 133-267 90-230 (421)
433 PF10516 SHNi-TPR: SHNi-TPR; 94.3 0.081 1.8E-06 30.7 3.4 30 305-334 2-31 (38)
434 PF04053 Coatomer_WDAD: Coatom 94.0 2.9 6.3E-05 40.3 15.2 125 48-209 271-396 (443)
435 KOG4151|consensus 93.9 0.26 5.6E-06 49.1 8.0 114 4-117 53-172 (748)
436 PF07720 TPR_3: Tetratricopept 93.2 0.29 6.3E-06 28.0 4.4 22 5-26 2-23 (36)
437 COG3629 DnrI DNA-binding trans 93.1 0.61 1.3E-05 41.3 8.4 64 38-101 153-216 (280)
438 PF09670 Cas_Cas02710: CRISPR- 92.8 5.1 0.00011 37.8 14.7 62 6-67 133-198 (379)
439 PRK11619 lytic murein transgly 92.8 13 0.00027 38.0 34.1 90 239-333 319-436 (644)
440 KOG3807|consensus 92.7 7.4 0.00016 35.0 16.4 174 159-336 191-394 (556)
441 PF10516 SHNi-TPR: SHNi-TPR; 92.5 0.24 5.2E-06 28.8 3.4 28 40-67 3-30 (38)
442 PF07720 TPR_3: Tetratricopept 92.4 0.46 9.9E-06 27.2 4.5 30 40-69 3-34 (36)
443 PF11207 DUF2989: Protein of u 92.2 2 4.3E-05 35.8 9.7 46 245-290 153-198 (203)
444 PF07721 TPR_4: Tetratricopept 92.1 0.24 5.2E-06 25.9 2.9 22 74-95 3-24 (26)
445 PF07721 TPR_4: Tetratricopept 92.1 0.22 4.8E-06 26.0 2.8 21 307-327 4-24 (26)
446 COG1076 DjlA DnaJ-domain-conta 92.0 0.2 4.4E-06 41.3 3.8 58 356-413 113-172 (174)
447 COG4455 ImpE Protein of avirul 91.9 4.9 0.00011 33.9 11.5 67 160-226 9-75 (273)
448 COG5536 BET4 Protein prenyltra 91.8 6.5 0.00014 34.5 12.5 88 22-109 50-147 (328)
449 TIGR03504 FimV_Cterm FimV C-te 91.8 0.55 1.2E-05 28.3 4.5 25 308-332 3-27 (44)
450 PF04190 DUF410: Protein of un 91.7 9.1 0.0002 34.0 19.0 131 184-319 88-243 (260)
451 KOG2063|consensus 91.5 20 0.00043 37.5 18.7 123 40-162 506-636 (877)
452 COG4455 ImpE Protein of avirul 91.4 5.7 0.00012 33.6 11.3 56 281-336 12-67 (273)
453 COG3947 Response regulator con 91.4 1.2 2.5E-05 39.2 7.7 62 271-332 280-341 (361)
454 KOG2581|consensus 91.3 12 0.00027 34.8 16.8 66 154-219 211-280 (493)
455 COG1747 Uncharacterized N-term 91.3 15 0.00031 35.5 21.4 197 53-266 81-293 (711)
456 PF10255 Paf67: RNA polymerase 91.1 8.1 0.00018 36.5 13.6 60 155-214 125-192 (404)
457 COG4941 Predicted RNA polymera 91.1 11 0.00025 34.0 15.6 164 168-343 212-404 (415)
458 KOG2114|consensus 90.8 4.7 0.0001 40.9 12.2 161 12-178 342-516 (933)
459 PHA02537 M terminase endonucle 90.6 4.6 0.0001 34.7 10.6 112 241-352 92-226 (230)
460 COG1076 DjlA DnaJ-domain-conta 90.4 0.39 8.5E-06 39.6 4.0 54 372-425 19-72 (174)
461 KOG3807|consensus 90.2 14 0.0003 33.4 17.6 92 10-103 190-306 (556)
462 PF10255 Paf67: RNA polymerase 89.7 4.9 0.00011 37.9 10.9 59 7-66 125-192 (404)
463 COG3947 Response regulator con 89.4 1.9 4E-05 38.0 7.3 59 40-98 281-339 (361)
464 PF00244 14-3-3: 14-3-3 protei 89.4 14 0.0003 32.3 15.5 171 155-333 4-198 (236)
465 PF14863 Alkyl_sulf_dimr: Alky 89.3 1.3 2.8E-05 34.9 5.9 51 38-88 70-120 (141)
466 COG5536 BET4 Protein prenyltra 89.0 15 0.00033 32.3 15.6 176 41-226 34-233 (328)
467 smart00299 CLH Clathrin heavy 88.9 9.7 0.00021 29.9 14.9 120 161-315 16-136 (140)
468 PF10373 EST1_DNA_bind: Est1 D 88.9 1.9 4.1E-05 38.8 7.7 62 23-84 1-62 (278)
469 cd02682 MIT_AAA_Arch MIT: doma 88.2 2.2 4.7E-05 29.2 5.6 31 2-32 4-34 (75)
470 PF04097 Nic96: Nup93/Nic96; 87.3 34 0.00073 34.9 16.0 24 312-336 513-536 (613)
471 PF11207 DUF2989: Protein of u 87.0 17 0.00037 30.5 14.1 77 163-252 117-198 (203)
472 PF00244 14-3-3: 14-3-3 protei 86.8 20 0.00044 31.2 14.1 62 5-66 2-65 (236)
473 KOG0276|consensus 86.8 8.4 0.00018 37.7 10.5 50 46-100 645-694 (794)
474 KOG0686|consensus 86.5 12 0.00026 34.9 10.8 141 187-336 151-307 (466)
475 TIGR03504 FimV_Cterm FimV C-te 86.1 1.9 4.2E-05 26.0 4.0 27 273-299 2-28 (44)
476 PF11817 Foie-gras_1: Foie gra 86.1 13 0.00029 32.7 11.1 82 250-331 156-245 (247)
477 smart00386 HAT HAT (Half-A-TPR 85.8 1.8 3.9E-05 23.5 3.8 28 18-45 1-28 (33)
478 PHA02537 M terminase endonucle 85.6 9.1 0.0002 33.0 9.3 35 269-303 168-211 (230)
479 PF10373 EST1_DNA_bind: Est1 D 85.5 3.7 8E-05 36.9 7.6 60 57-116 1-60 (278)
480 KOG1463|consensus 85.3 29 0.00063 31.6 24.8 280 4-302 4-319 (411)
481 PF12739 TRAPPC-Trs85: ER-Golg 85.2 37 0.0008 32.7 14.7 167 75-264 211-402 (414)
482 KOG0889|consensus 85.1 1E+02 0.0022 37.7 27.4 83 269-351 2811-2901(3550)
483 TIGR02710 CRISPR-associated pr 84.7 35 0.00076 32.0 14.1 56 8-63 134-196 (380)
484 smart00386 HAT HAT (Half-A-TPR 84.7 3 6.4E-05 22.6 4.3 28 285-312 2-29 (33)
485 KOG1920|consensus 83.8 68 0.0015 34.6 19.5 18 12-29 685-702 (1265)
486 PF14863 Alkyl_sulf_dimr: Alky 83.8 3.7 8.1E-05 32.3 5.8 52 71-122 69-120 (141)
487 PF11817 Foie-gras_1: Foie gra 83.7 17 0.00036 32.1 10.6 61 237-297 183-245 (247)
488 PF09670 Cas_Cas02710: CRISPR- 82.8 30 0.00064 32.8 12.4 66 74-147 133-198 (379)
489 KOG0686|consensus 82.3 44 0.00096 31.3 14.2 97 234-331 152-256 (466)
490 KOG2063|consensus 81.9 44 0.00095 35.2 13.9 175 155-332 507-712 (877)
491 PF12739 TRAPPC-Trs85: ER-Golg 80.5 56 0.0012 31.4 15.7 96 6-101 210-329 (414)
492 smart00101 14_3_3 14-3-3 homol 80.3 40 0.00086 29.5 16.9 169 156-332 5-199 (244)
493 cd02681 MIT_calpain7_1 MIT: do 80.2 3 6.5E-05 28.7 3.6 30 3-32 5-34 (76)
494 PF10938 YfdX: YfdX protein; 80.0 30 0.00064 27.9 9.9 69 230-298 73-145 (155)
495 PF12854 PPR_1: PPR repeat 78.7 6.6 0.00014 22.0 4.2 26 72-97 7-32 (34)
496 PF12854 PPR_1: PPR repeat 78.4 6 0.00013 22.2 4.0 27 37-63 6-32 (34)
497 PF10952 DUF2753: Protein of u 78.4 13 0.00029 28.1 6.6 29 5-33 2-30 (140)
498 cd02682 MIT_AAA_Arch MIT: doma 78.3 7.8 0.00017 26.6 5.1 19 277-295 13-31 (75)
499 KOG1920|consensus 77.3 1.1E+02 0.0025 33.1 19.6 21 239-259 1006-1026(1265)
500 KOG0687|consensus 77.3 51 0.0011 29.9 11.0 103 152-263 104-212 (393)
No 1
>KOG0624|consensus
Probab=100.00 E-value=1.5e-68 Score=451.12 Aligned_cols=428 Identities=26% Similarity=0.353 Sum_probs=408.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
+++.++++|..++..|++..|+..|..|++.+|++..+++.+|.+|+.+|+...|+..+.+++++.|++..+....|.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNP---AIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA 159 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 159 (470)
+++|.++.|...|..+++.+|.+. ++...++.+............++..|+...|+..++.++++.|.+...+..++
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 999999999999999999999654 55566666666666777888889999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
.||...|+...||..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++..++..++.++.+....+-+
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ 319 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 319 (470)
......++|.++++..++.++.+|..+.+....+..++.|+..-+++.+|+..|.+++.++|+++.++..+|.+|+....
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999997776667778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhH
Q psy16214 320 YKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKL 398 (470)
Q Consensus 320 ~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~ 398 (470)
|+.|+..|++|.+.+++ ..+++.+.++++..+++.+++||++|||.++++..||.|||||+|.+||||...+ +++++
T Consensus 357 YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd--EeEKK 434 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQD--EEEKK 434 (504)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccC--HHHHH
Confidence 99999999999999998 7889999999999999999999999999999999999999999999999999987 67788
Q ss_pred HHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCC
Q psy16214 399 EQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMED 432 (470)
Q Consensus 399 ~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~ 432 (470)
.++++|-+|+.|-|||+||+||+.+|+|.||.++
T Consensus 435 kAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~ 468 (504)
T KOG0624|consen 435 KAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDP 468 (504)
T ss_pred HHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCCh
Confidence 9999999999999999999999999999999765
No 2
>KOG0550|consensus
Probab=100.00 E-value=4.2e-61 Score=415.70 Aligned_cols=426 Identities=47% Similarity=0.724 Sum_probs=384.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.++.....|+.++...+|.+|+..|+.||+..|+++..|.+++.+++..++|++|+-..++.++++|...+.+.+.++|+
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG---VASKTYKLMKA 159 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a 159 (470)
..+++..+|.+.++. ..++ ....|+..+++.+..+ |....+....+
T Consensus 128 ~a~~~~i~A~~~~~~--------~~~~-----------------------~~anal~~~~~~~~s~s~~pac~~a~~lka 176 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKS--------KQAY-----------------------KAANALPTLEKLAPSHSREPACFKAKLLKA 176 (486)
T ss_pred hhhHHHHHHHHHhhh--------hhhh-----------------------HHhhhhhhhhcccccccCCchhhHHHHhhh
Confidence 999999999988871 1111 0112333344444332 44557778899
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
.|+...+++++|+..--.++++++.+.++++..|.+++..++.+.|+.+|++++.++|++..........+.+..+.+.|
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ 319 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 319 (470)
+-.++.|++..|.++|..+|.++|++...++.+|.++|.+..++|+..+|+..|+.++.++|...+++..+|.|++.+++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHH
Q psy16214 320 YKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLE 399 (470)
Q Consensus 320 ~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~ 399 (470)
|++|+++|+++++...+.++.+.|++++..+++++++++|++||+.+.+++++|+++||++++.||||++..+ +++
T Consensus 337 ~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags----q~e 412 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS----QKE 412 (486)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch----hHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999884 678
Q ss_pred HHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCC-CCCCCCccchhHHHHHHHh-------cCCCCCCCCC--cceeee
Q psy16214 400 QEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDS-GMGGHAGANLFEQHMFQTY-------FDPGCRARGS--NVRFQY 468 (470)
Q Consensus 400 ~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~ 468 (470)
+|.+|+++++||.+|+||.+|.+||.|.|....+ |++|+|| +++|+.| |+||++++++ ||.|+|
T Consensus 413 aE~kFkevgeAy~il~d~~kr~r~dsg~dle~~~~~~a~~dp-----~~~~~a~qa~~~f~f~gg~~~n~~g~g~~f~f 486 (486)
T KOG0550|consen 413 AEAKFKEVGEAYTILSDPMKRVRFDSGQDLEEVGSGGAGFDP-----FNIFRAFQALVQFGFPGGFSENSSGFGFIFQF 486 (486)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhhcccccchhhhcCCCcCcCh-----hhhhhhcccceEEeccCCCCCCCCCcccccCC
Confidence 9999999999999999999999999999986543 4578999 5666555 4445554322 455555
No 3
>KOG4626|consensus
Probab=100.00 E-value=3.6e-41 Score=305.69 Aligned_cols=327 Identities=21% Similarity=0.178 Sum_probs=290.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------------
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR------------- 70 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------------- 70 (470)
++.+-++|+.+...|++++|+.+|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 5678888888888889999999999888888888888888888888888877777777777777665
Q ss_pred ---------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 71 ---------------------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF 129 (470)
Q Consensus 71 ---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 129 (470)
.+.+|.+||.++...|+...|+..|+++++++|+..+++..||.++.....++.|...+
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 44466777777777888888888888888889999999999999988888887777654
Q ss_pred ----------------------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH
Q psy16214 130 ----------------------EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD 187 (470)
Q Consensus 130 ----------------------~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 187 (470)
++|..+-|+..|+++++..|+.+.++.++|.++-..|+..+|..+|.+++.+.|+.++
T Consensus 276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had 355 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD 355 (966)
T ss_pred HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH
Confidence 3589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc
Q psy16214 188 AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN 267 (470)
Q Consensus 188 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 267 (470)
+.+++|.++...|.+++|...|.++++..|+...+..++ |.+|-++|++++|+.+|++++++.|.
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNL------------a~i~kqqgnl~~Ai~~YkealrI~P~--- 420 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNL------------ASIYKQQGNLDDAIMCYKEALRIKPT--- 420 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhH------------HHHHHhcccHHHHHHHHHHHHhcCch---
Confidence 999999999999999999999999999999999888888 99999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q psy16214 268 INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEA 346 (470)
Q Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~ 346 (470)
.+.++.++|.+|..+|+...|+.+|.+||.++|..++++.++|.+|...|+..+|+..|+.++++.|+ +++...+..+
T Consensus 421 -fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 421 -FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred -HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999998 6665444433
No 4
>KOG4626|consensus
Probab=100.00 E-value=4.8e-39 Score=291.89 Aligned_cols=315 Identities=19% Similarity=0.189 Sum_probs=251.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcC----------------------------------CchhHHHHHHHHHHHHc
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVC----------------------------------PNVAAYYGNRAACYMML 51 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~~a~~~~~~ 51 (470)
...+++...++.|+|.+|.++.......+ |.-.++|.++|.++...
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 35667777777777777777766655444 44478999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-
Q psy16214 52 GMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE- 130 (470)
Q Consensus 52 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~- 130 (470)
|++++|+..|+.+++++|++.++|.++|.++...|+.+.|..+|..+++++|+...+...++.+....|++.+|...+.
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888877766543
Q ss_pred ---------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHH
Q psy16214 131 ---------------------ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAV 189 (470)
Q Consensus 131 ---------------------~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 189 (470)
+|+...|+..|++++.++|....+++++|.+|...+.++.|+.+|.+++.+.|+++.++
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~ 289 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAH 289 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhc
Confidence 48999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccch
Q psy16214 190 FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ 269 (470)
Q Consensus 190 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 269 (470)
.++|.+|+.+|..+-||..|+++++++|..+.++.++ |+++-..|+..+|+.+|.+++.++|+ .
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nl------------anALkd~G~V~ea~~cYnkaL~l~p~----h 353 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNL------------ANALKDKGSVTEAVDCYNKALRLCPN----H 353 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHH------------HHHHHhccchHHHHHHHHHHHHhCCc----c
Confidence 9999999999999999999999999999999988887 55555555555555555555555555 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+.+.+++|.++.++|.+++|...|.++++..|....++.++|.+|...|++++|+.+|+.++.+.|.
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 3445555555555555555555555555555555555555555555555555555555555555554
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.6e-34 Score=288.78 Aligned_cols=316 Identities=21% Similarity=0.239 Sum_probs=278.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+..+..+|+.++..|+|++|+..|+++|...|+ +..+.++|.||..+|++++|+..++++++++|++..+++++|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 557889999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHH------------------------------HHHHHHHHH--------------
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQ------------------------------ESKALETMA-------------- 119 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~------------------------------~l~~~~~~~-------------- 119 (470)
.+|++++|+..|..++.+++.+..... .++..+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999999998877766554332111 111111000
Q ss_pred -------HHHHHHHHH---HhcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q psy16214 120 -------KNFEGASKA---FEANDYRTAMFYLDRAMDQ---GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186 (470)
Q Consensus 120 -------~~~~~a~~~---~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 186 (470)
.....+... ...+.|++|+..+++++.. .|....++..+|.++...|++++|+..+++++..+|.++
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 000001000 1236899999999999986 477788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc
Q psy16214 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI 266 (470)
Q Consensus 187 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 266 (470)
.+++.+|.++...|++++|+..|+++++.+|+++.++..+ |.+++..|++++|+..|++++.++|++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~kal~l~P~~- 432 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR------------AQLHFIKGEFAQAGKDYQKSIDLDPDF- 432 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCccC-
Confidence 9999999999999999999999999999999999998888 999999999999999999999999994
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 267 NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
..++.++|.++..+|++++|+..+++++...|+++.++..+|.++..+|++++|+..|++++++.|.
T Consensus 433 ---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 433 ---IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 5669999999999999999999999999999999999999999999999999999999999999986
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.9e-32 Score=273.89 Aligned_cols=310 Identities=17% Similarity=0.161 Sum_probs=266.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--------------- 67 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------- 67 (470)
++..+.++|.++...|+|++|+..++++++.+|++..+++.+|.+|..+|++++|+..+..++..
T Consensus 159 ~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
T TIGR00990 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERL 238 (615)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999987655433211
Q ss_pred --------------------------------------------------------------------------------
Q psy16214 68 -------------------------------------------------------------------------------- 67 (470)
Q Consensus 68 -------------------------------------------------------------------------------- 67 (470)
T Consensus 239 l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~ 318 (615)
T TIGR00990 239 LKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFE 318 (615)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHH
Confidence
Q ss_pred --------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy16214 68 --------DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMF 139 (470)
Q Consensus 68 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 139 (470)
.|....++..+|.++..+|++++|+..|+++++++|++...+..++.+ +...|++++|+.
T Consensus 319 ~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~------------~~~~g~~~eA~~ 386 (615)
T TIGR00990 319 KALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM------------NLELGDPDKAEE 386 (615)
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH------------HHHCCCHHHHHH
Confidence 233445566677777777777777777777777777777666555444 566799999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCCh
Q psy16214 140 YLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH 219 (470)
Q Consensus 140 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 219 (470)
.+++++..+|+++.++..+|.++...|++++|+..|++++.++|++..++..+|.++..+|++++|+..+++++...|++
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchH--HHHHHHHHH-HHHcCCHHHHHHHHHHH
Q psy16214 220 AKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININS--KLLHNRATV-LFKMGKYNEAIADCTLA 296 (470)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~~~~~la~~-~~~~g~~~~A~~~~~~a 296 (470)
+.++..+ |.++...|++++|+..|++++.+.|.+..... ..+...+.+ +...|++++|+..++++
T Consensus 467 ~~~~~~l------------g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 467 PDVYNYY------------GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred hHHHHHH------------HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9988888 99999999999999999999999987543211 223333333 44479999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 297 LEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 297 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+.++|++..++..+|.++..+|++++|+.+|++++++.++
T Consensus 535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999886
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=4.5e-32 Score=270.28 Aligned_cols=331 Identities=13% Similarity=0.065 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
+.++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..++.++..
T Consensus 77 ~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~ 156 (656)
T PRK15174 77 DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL 156 (656)
T ss_pred hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q psy16214 85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV-ASKTYKLMKAECLA 163 (470)
Q Consensus 85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~ 163 (470)
.|++++|+..+.+++...|+++.++..+ ..++..|++++|+..+++++...| ........++.++.
T Consensus 157 ~g~~~eA~~~~~~~~~~~P~~~~a~~~~-------------~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 157 MDKELQAISLARTQAQEVPPRGDMIATC-------------LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHH-------------HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 5555555555555555555444432111 124567999999999999999876 33445566788999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHH----HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 164 HLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDL----AVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 164 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
..|++++|+..+.+++..+|+++.++..+|.++...|++++ |+..|++++..+|++..++..+ |
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~l------------g 291 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLY------------A 291 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHH------------H
Confidence 99999999999999999999999999999999999999986 8999999999999999999888 9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ 319 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 319 (470)
.++...|++++|+..+++++...|++ ..++.++|.++...|++++|+..|++++..+|+++..+..+|.++...|+
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l~P~~----~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLATHPDL----PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence 99999999999999999999999994 56689999999999999999999999999999998888888999999999
Q ss_pred HHHHHHHHHHHHhcCCC------hhHHHHHHHHHHHhhccccc-chhhhccC
Q psy16214 320 YKECVIDAEKIYKMDNS------RENHNFLEEAKRLLKRSEVK-DYYKILGV 364 (470)
Q Consensus 320 ~~~A~~~~~~a~~~~p~------~~~~~~l~~~~~~~~~~~~~-~~y~~lg~ 364 (470)
+++|+..|+++++++|+ .+....+..+.......... ++..-|..
T Consensus 368 ~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~ 419 (656)
T PRK15174 368 TSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAG 419 (656)
T ss_pred HHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhc
Confidence 99999999999999987 23344444444444444333 45544444
No 8
>KOG0548|consensus
Probab=100.00 E-value=4.5e-32 Score=244.02 Aligned_cols=342 Identities=26% Similarity=0.366 Sum_probs=289.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+..+..+|+..+..|+|+.|+.+|+.+|.++|.+...|.++..+|..+|+|++|++...+.++++|.++.+|.++|..+.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH------------------------------------------
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN------------------------------------------ 121 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~------------------------------------------ 121 (470)
.+|+|++|+..|.+.++.+|+|......+...+.....
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 99999999999999999999999988888877622100
Q ss_pred ---------H---------------------------------------------------------HHHHHHHhcCCHH
Q psy16214 122 ---------F---------------------------------------------------------EGASKAFEANDYR 135 (470)
Q Consensus 122 ---------~---------------------------------------------------------~~a~~~~~~~~~~ 135 (470)
. ..+...+...++.
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 0 0001112226888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh-------HHHHHHHHHHhccCChHHHHHH
Q psy16214 136 TAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP-------DAVFVRGLCLYYDDKMDLAVNH 208 (470)
Q Consensus 136 ~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~ 208 (470)
.|++.+..++.++ .+...+.+.+-+|+..|.+.+++..+.++++...... .+...+|..+...++++.|+.+
T Consensus 242 ~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 242 TAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 9999999999999 8888899999999999999999999988877654432 2344466677788999999999
Q ss_pred HHHHHhhCCC--hHHHHHHHHHH------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHH
Q psy16214 209 FQLLLKLAPD--HAKAKETYKRA------------KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLH 274 (470)
Q Consensus 209 ~~~~l~~~p~--~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 274 (470)
|++++..... ........... .........|+.++..|+|..|+..|+++|..+|+ .+.+|.
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~----Da~lYs 396 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE----DARLYS 396 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc----hhHHHH
Confidence 9999875543 22222211111 12334455699999999999999999999999999 567799
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHh
Q psy16214 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLL 350 (470)
Q Consensus 275 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~ 350 (470)
|+|.||.+++.+..|+..++++++++|+...+|.+.|.++..+.+|++|.+.|+++++.+|+ .++...+.++....
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998 77777777776554
No 9
>KOG0547|consensus
Probab=100.00 E-value=5.7e-32 Score=239.81 Aligned_cols=318 Identities=24% Similarity=0.330 Sum_probs=221.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.+..+..+|+.+|..|+|++||++|+.||+++|+.+..|.+++.||..+|+|++.++.+.++++++|++..++++++.++
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH 193 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhc--------------------------------CCCChHHH---------------------
Q psy16214 83 IALGDAPTARSNLKALQEL--------------------------------DPDNPAIA--------------------- 109 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~--------------------------------~p~~~~~~--------------------- 109 (470)
..+|++++|+....-..-+ .|.-|.+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 9999999988654321110 01111000
Q ss_pred --------HHHHHHHHH-HHHHHHHHH-----------------------------------HHhcCCHHHHHHHHHHHH
Q psy16214 110 --------QESKALETM-AKNFEGASK-----------------------------------AFEANDYRTAMFYLDRAM 145 (470)
Q Consensus 110 --------~~l~~~~~~-~~~~~~a~~-----------------------------------~~~~~~~~~A~~~~~~~l 145 (470)
..+..++.. ...|..+.. ++-.|++-.|...++.+|
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 000000000 000000000 122366666777777777
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH
Q psy16214 146 DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET 225 (470)
Q Consensus 146 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 225 (470)
.++|.....++.++.+|...++.++-...|.++.+++|.++++|+.+|.+++.++++++|+..|++++.++|++...+..
T Consensus 354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 77777776677777777777777777777777777777777777777777777777777777777777777777666655
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q psy16214 226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN--- 302 (470)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 302 (470)
+ +...+++++++++...|+.+++..|+ .+.++...|.++..++++++|++.|.+++.+.|.
T Consensus 434 l------------~~a~Yr~~k~~~~m~~Fee~kkkFP~----~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 434 L------------CCALYRQHKIAESMKTFEEAKKKFPN----CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred H------------HHHHHHHHHHHHHHHHHHHHHHhCCC----CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 5 66666666777777777777777666 3444666677777777777777777777777666
Q ss_pred ---CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCC
Q psy16214 303 ---YLKALSRRCKCFH-ALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 303 ---~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++..+...|.+.. -.+++..|+..+++|++++|.
T Consensus 498 ~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK 535 (606)
T ss_pred ccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch
Confidence 4444444443332 236666777777777777765
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=7.1e-30 Score=271.34 Aligned_cols=318 Identities=18% Similarity=0.141 Sum_probs=246.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH--------------H
Q psy16214 9 EDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSK--------------G 74 (470)
Q Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 74 (470)
.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45778888888888888888888888888888888888888888888888888888888886542 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214 75 LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTY 154 (470)
Q Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 154 (470)
...+|.++...|++++|+..|++++.++|++..++..++.+ +...|++++|+..|+++++.+|.+..+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~------------~~~~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDV------------AMARKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------HHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 23457777888888888888888888888887777666665 555667777777777777777766554
Q ss_pred HHHH------------------------------------------HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHH
Q psy16214 155 KLMK------------------------------------------AECLAHLNRLQEAQEIANSILATDKQNPDAVFVR 192 (470)
Q Consensus 155 ~~~~------------------------------------------a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 192 (470)
+..+ |.++...|++++|+..|+++++.+|+++.+++.+
T Consensus 422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~L 501 (1157)
T PRK11447 422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRL 501 (1157)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4333 3344556888888888888888888888888888
Q ss_pred HHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHH--------------------------------HHHHHHHHHH
Q psy16214 193 GLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK--------------------------------LLKAKKEEGN 240 (470)
Q Consensus 193 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~--------------------------------~~~~~~~~~~ 240 (470)
|.++...|++++|+..+++++...|+++..+..+.... ........+.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 88888888888888888888888887776554331110 0112234577
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q psy16214 241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY 320 (470)
Q Consensus 241 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 320 (470)
.+...|++++|+.+++ ..|.+ ..++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++
T Consensus 582 ~l~~~G~~~eA~~~l~----~~p~~----~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 582 RLRDSGKEAEAEALLR----QQPPS----TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHCCCHHHHHHHHH----hCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 8888999999988876 46764 456889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-hhHHHHHHHH
Q psy16214 321 KECVIDAEKIYKMDNS-RENHNFLEEA 346 (470)
Q Consensus 321 ~~A~~~~~~a~~~~p~-~~~~~~l~~~ 346 (470)
++|+..++++++..|+ ......+..+
T Consensus 654 ~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 654 AAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 9999999999999886 3444444433
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4e-30 Score=273.21 Aligned_cols=318 Identities=15% Similarity=0.119 Sum_probs=281.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhH--------------HHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAA--------------YYGNRAACYMMLGMYTYALDDAKLAVSLD 68 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 68 (470)
+++.+..+|.+++..|++++|+.+|+++++.+|++.. ....+|.++...|++++|+..|+++++++
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5678999999999999999999999999999997642 22456888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH----------------------------
Q psy16214 69 PRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK---------------------------- 120 (470)
Q Consensus 69 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~---------------------------- 120 (470)
|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++....
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999998888877763210
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc
Q psy16214 121 --NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY 198 (470)
Q Consensus 121 --~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 198 (470)
....+..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...|.++..++.++..+..
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG 541 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 112344456789999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred cCChHHHHHHHHHHHh----------------------------------------hCCChHHHHHHHHHHHHHHHHHHH
Q psy16214 199 DDKMDLAVNHFQLLLK----------------------------------------LAPDHAKAKETYKRAKLLKAKKEE 238 (470)
Q Consensus 199 ~g~~~~A~~~~~~~l~----------------------------------------~~p~~~~~~~~~~~~~~~~~~~~~ 238 (470)
.+++++|+..++++.. ..|.++... ...
T Consensus 542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~------------~~L 609 (1157)
T PRK11447 542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRID------------LTL 609 (1157)
T ss_pred CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHH------------HHH
Confidence 9999999888776432 123333333 334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 318 (470)
|.++...|++++|+..|+++++.+|++ ..++..++.++...|++++|+..++++++..|+++.++..+|.++..+|
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~----~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGN----ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 999999999999999999999999994 5679999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q psy16214 319 QYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 319 ~~~~A~~~~~~a~~~~p~ 336 (470)
++++|+..|++++...|+
T Consensus 686 ~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred CHHHHHHHHHHHhhhCcc
Confidence 999999999999998765
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.6e-29 Score=265.54 Aligned_cols=336 Identities=18% Similarity=0.137 Sum_probs=234.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL 85 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 85 (470)
....++..+...|++++|+..+++.+...|.++.++..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 33444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH----------------------HHHhcCCHHHHHHHHHH
Q psy16214 86 GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS----------------------KAFEANDYRTAMFYLDR 143 (470)
Q Consensus 86 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~----------------------~~~~~~~~~~A~~~~~~ 143 (470)
|++++|+..+++++...|.+..++..++.++...++...|. .+...|++++|+..+++
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555555555555555555555555544333333332 23445777777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214 144 AMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK 223 (470)
Q Consensus 144 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 223 (470)
++...|.++.++..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++...+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 672 (899)
T TIGR02917 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672 (899)
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777766555
Q ss_pred HHHHHHH----------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHH
Q psy16214 224 ETYKRAK----------------------LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF 281 (470)
Q Consensus 224 ~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~ 281 (470)
..+..+. ........|.++...|++++|+..|++++...|++ ..+..++.++.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~ 747 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-----QNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHH
Confidence 4432221 01122234888999999999999999999998874 45778899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q psy16214 282 KMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEA 346 (470)
Q Consensus 282 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~ 346 (470)
..|++++|+..+++++..+|+++.++..+|.++..+|++++|+..|+++++..|+ ..+...+..+
T Consensus 748 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 813 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWL 813 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 4444444433
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.6e-29 Score=251.99 Aligned_cols=274 Identities=15% Similarity=0.100 Sum_probs=250.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
+++.+..+|..+...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l 187 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SF 187 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999998887765 48
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL 162 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 162 (470)
...|++++|+..+++++...|....... ...+..+...|++++|+..+.+++...|+++.++..+|.++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~-----------~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l 256 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESA-----------GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAY 256 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHH-----------HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 8999999999999999998764433211 11233467889999999999999999999999999999999
Q ss_pred HHcCCHHH----HHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214 163 AHLNRLQE----AQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238 (470)
Q Consensus 163 ~~~~~~~~----A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 238 (470)
...|++++ |+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~L------------ 324 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMY------------ 324 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------
Confidence 99999986 89999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL 304 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (470)
|.++...|++++|+..|++++...|.+ ...+..+|.++...|++++|+..|+++++.+|++.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~----~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVT----SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999999999999984 34566779999999999999999999999999874
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.7e-29 Score=264.29 Aligned_cols=315 Identities=17% Similarity=0.174 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+..++.+|..+...|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++.
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH----------------------HhcCCHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA----------------------FEANDYRTAMFYL 141 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~----------------------~~~~~~~~A~~~~ 141 (470)
..|++++|+..+++++...|.++..+..++.++...+.++.|... ...|++++|+..+
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777777776777776666666666655555554443 2347788888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHH
Q psy16214 142 DRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK 221 (470)
Q Consensus 142 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 221 (470)
++++...|++...+..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++...|++ .
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 737 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q 737 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence 888888888777777777777777888888877777777777777777777777777777777777777777777766 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16214 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301 (470)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (470)
....+ +.++...|++++|+..+++++...|++ ..++..+|.++..+|++++|+..|+++++.+|
T Consensus 738 ~~~~l------------~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 738 NAIKL------------HRALLASGNTAEAVKTLEAWLKTHPND----AVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 23333 555555556666666555555555552 34455555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 302 NYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 302 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+++.++..++.++...|+ .+|+..+++++++.|+
T Consensus 802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 555555555555555555 5555555555555554
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=7.1e-28 Score=245.26 Aligned_cols=340 Identities=15% Similarity=0.041 Sum_probs=251.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.+..+..+|..+...|++++|+..|++++..+|.++.++..++.++...|++++|+..++++++.+|+++. +..+|.++
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l 126 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVY 126 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-------------------------------c
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE-------------------------------A 131 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~-------------------------------~ 131 (470)
...|++++|+..+++++++.|+++.++..++.++...+..+.|+..+. .
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 999999999999999999999999988887777643333332222211 0
Q ss_pred CCH---HHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh-HHHHHHHHHHhccC
Q psy16214 132 NDY---RTAMFYLDRAMDQGVASKTY-------KLMKAECLAHLNRLQEAQEIANSILATDKQNP-DAVFVRGLCLYYDD 200 (470)
Q Consensus 132 ~~~---~~A~~~~~~~l~~~p~~~~~-------~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g 200 (470)
+++ ++|+..++.++...|.++.. .......+...|++++|+..|+++++..|..+ .+...+|.++...|
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 112 44555555555442222211 11111223444555666666666555543222 12233455555556
Q ss_pred ChHHHHHHHHHHHhhCCChH----HHHHH-----------------HHHHHH--------------------HHHHHHHH
Q psy16214 201 KMDLAVNHFQLLLKLAPDHA----KAKET-----------------YKRAKL--------------------LKAKKEEG 239 (470)
Q Consensus 201 ~~~~A~~~~~~~l~~~p~~~----~~~~~-----------------~~~~~~--------------------~~~~~~~~ 239 (470)
++++|+..|++++..+|.+. ..... +..+.. .......+
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 66666666555555544331 00000 000000 01122348
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ 319 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 319 (470)
.++...|++++|+..+++++...|.+ ..++..+|.++...|++++|+..+++++.++|++..+++.+|.++..+|+
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n----~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGN----QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 88999999999999999999999995 56799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHH
Q psy16214 320 YKECVIDAEKIYKMDNSRENHNFLEEAK 347 (470)
Q Consensus 320 ~~~A~~~~~~a~~~~p~~~~~~~l~~~~ 347 (470)
+++|...++++++..|+......+.+..
T Consensus 443 ~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 443 WRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999866666665544
No 16
>KOG1126|consensus
Probab=99.97 E-value=5.6e-29 Score=229.68 Aligned_cols=300 Identities=18% Similarity=0.200 Sum_probs=276.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214 9 EDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA 88 (470)
Q Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 88 (470)
.+|......-+..+|+..|.+.-...++...++..+|.+|+.+++|++|..+|+.+-++.|-..+..-....+++.+.+-
T Consensus 324 ~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~ 403 (638)
T KOG1126|consen 324 GEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE 403 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh
Confidence 33444455567789999999977778888899999999999999999999999999999999888888888888888876
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy16214 89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL 168 (470)
Q Consensus 89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 168 (470)
-+---.-+.++..+|+.|+.|..+|.++..+ ++++.|++.+++++.++|....++..+|.-+.....+
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ------------kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQ------------KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF 471 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhh------------hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH
Confidence 6666677788899999999999999996554 5677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248 (470)
Q Consensus 169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (470)
+.|..+|+.++..+|.+..+|+.+|.+|.++++++.|.-+|++|++++|.+......+ |.++.+.|+.
T Consensus 472 d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~------------g~~~~~~k~~ 539 (638)
T KOG1126|consen 472 DKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHI------------GRIQHQLKRK 539 (638)
T ss_pred HhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhh------------hHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999988888 9999999999
Q ss_pred HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16214 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328 (470)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 328 (470)
++|+..|++|+.++|.++ ...+.+|.++..++++++|+..+++..++-|++..+++.+|.+|.++|+.+.|+..|.
T Consensus 540 d~AL~~~~~A~~ld~kn~----l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 540 DKALQLYEKAIHLDPKNP----LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hHHHHHHHHHHhcCCCCc----hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 999999999999999965 4589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC
Q psy16214 329 KIYKMDNS 336 (470)
Q Consensus 329 ~a~~~~p~ 336 (470)
-|..++|.
T Consensus 616 ~A~~ldpk 623 (638)
T KOG1126|consen 616 WALDLDPK 623 (638)
T ss_pred HHhcCCCc
Confidence 99999997
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.97 E-value=6.6e-27 Score=222.72 Aligned_cols=300 Identities=15% Similarity=0.053 Sum_probs=258.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF----SKGLIRQI 79 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 79 (470)
....+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999998854332 35788999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HH
Q psy16214 80 KCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK-----TY 154 (470)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~ 154 (470)
.+|...|++++|+..|.++++..|.+..++..++.+ +...|++++|+..+.+++...|... ..
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEI------------YQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHH------------HHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 999999999999999999999988888777666655 5667889999999999998887653 35
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHH
Q psy16214 155 KLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-KAKETYKRAKLLK 233 (470)
Q Consensus 155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~ 233 (470)
+..+|.++...|++++|+..++++++..|++..+++.+|.++...|++++|+..+++++..+|.+. ..+..+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l------- 255 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL------- 255 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH-------
Confidence 667899999999999999999999999999999999999999999999999999999999888763 334444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC 313 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (470)
+.++...|++++|+..+++++...|+. ..+..++.++...|++++|+..++++++..|++......++..
T Consensus 256 -----~~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 256 -----MECYQALGDEAEGLEFLRRALEEYPGA-----DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred -----HHHHHHcCCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 889999999999999999999998873 2347899999999999999999999999999987655445444
Q ss_pred HHH--hCCHHHHHHHHHHHHh
Q psy16214 314 FHA--LGQYKECVIDAEKIYK 332 (470)
Q Consensus 314 ~~~--~g~~~~A~~~~~~a~~ 332 (470)
+.. .|+..+|+..+++.++
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhccCCccchhHHHHHHHHHH
Confidence 422 4588888888887775
No 18
>KOG2002|consensus
Probab=99.96 E-value=3.9e-26 Score=218.60 Aligned_cols=340 Identities=18% Similarity=0.143 Sum_probs=271.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
.++.+|.+|..+..+|+|++|..+|.+++..+|++ .-.++.+|..|+..|+++.|+.+|+++++..|++.++...+|.+
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 35678999999999999999999999999999988 77889999999999999999999999999999999999999999
Q ss_pred HHHcC----ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH------HHHHHH--------------------HHHhc
Q psy16214 82 NIALG----DAPTARSNLKALQELDPDNPAIAQESKALETMAK------NFEGAS--------------------KAFEA 131 (470)
Q Consensus 82 ~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~------~~~~a~--------------------~~~~~ 131 (470)
|...+ ..+.|..++.++++..|.+.++|..++.++.... .+..|. ..+..
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 98886 6688999999999999999999999998875432 233333 23456
Q ss_pred CCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC
Q psy16214 132 NDYRTAMFYLDRAMDQ-----GVAS-----KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK 201 (470)
Q Consensus 132 ~~~~~A~~~~~~~l~~-----~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 201 (470)
|++.+|...+..++.. +++. ....+++|.++...++++.|.+.|..+++.+|...+++..+|......++
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~ 545 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNN 545 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccC
Confidence 9999999999999877 2222 34588999999999999999999999999999999999999988888899
Q ss_pred hHHHHHHHHHHHhhCCChHHHHHHHHHHHH------------------------HHHHHHHHHHHHh------------c
Q psy16214 202 MDLAVNHFQLLLKLAPDHAKAKETYKRAKL------------------------LKAKKEEGNEKFV------------A 245 (470)
Q Consensus 202 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~------------~ 245 (470)
..+|...+..++..+..++.++..++.+.. .-+....|+++++ .
T Consensus 546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~k 625 (1018)
T KOG2002|consen 546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEK 625 (1018)
T ss_pred cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHH
Confidence 999999999999999999999888763311 1122334666654 2
Q ss_pred CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16214 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVI 325 (470)
Q Consensus 246 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 325 (470)
+.+++|+.+|.++|+.+|.| ..+-..+|.|+...|++.+|+..|.++.+--.+++.+|.++|.||..+|+|..|++
T Consensus 626 k~~~KAlq~y~kvL~~dpkN----~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKN----MYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcch----hhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHH
Confidence 56788999999999999984 45566677777777777777777777776666667777777777777777777777
Q ss_pred HHHHHHhcCC---ChhHHHHHHHH
Q psy16214 326 DAEKIYKMDN---SRENHNFLEEA 346 (470)
Q Consensus 326 ~~~~a~~~~p---~~~~~~~l~~~ 346 (470)
.|+.+++..- +.++...|.++
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHH
Confidence 7777776543 24454444444
No 19
>KOG0624|consensus
Probab=99.96 E-value=1.9e-26 Score=196.31 Aligned_cols=360 Identities=16% Similarity=0.241 Sum_probs=281.5
Q ss_pred CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHH
Q psy16214 34 CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESK 113 (470)
Q Consensus 34 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 113 (470)
+|.++.-++.+|..++..|++..|+..|..|++.+|++..++++.|.+|+.+|+..-|+..+.+++++.|+...+.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR---- 109 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR---- 109 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH----
Confidence 5667888999999999999999999999999999999999999999999999999999999999999999987775
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HH------------HHHHHHHHHcCCHHHHHHHHHHH
Q psy16214 114 ALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT---YK------------LMKAECLAHLNRLQEAQEIANSI 178 (470)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~------------~~~a~~~~~~~~~~~A~~~~~~~ 178 (470)
.+.+..++++|.+++|..-|+.++..+|++.. +. ......+...|++..|+.....+
T Consensus 110 --------iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 110 --------IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred --------HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 44455588999999999999999999995532 21 22334456679999999999999
Q ss_pred hhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 179 LATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA 258 (470)
Q Consensus 179 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 258 (470)
++..|=++..+..++.||...|++..||..++.+-++..++.....-+ +..++..|+.+.++...+++
T Consensus 182 lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki------------s~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 182 LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI------------SQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH------------HHHHHhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988777 99999999999999999999
Q ss_pred HhhcccCccchHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhCCHHHHHHH
Q psy16214 259 LKIDARNININSKL--------LHNRATVLFKMGKYNEAIADCTLALEKDPNYLK----ALSRRCKCFHALGQYKECVID 326 (470)
Q Consensus 259 l~~~p~~~~~~~~~--------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~ 326 (470)
++++|++....+.. ...-+......++|.++++..++.++.+|..+. ....+..|+..-|++.+|+..
T Consensus 250 LKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 250 LKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred HccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 99999976432110 011134456778999999999999999998543 455578899999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhhcc----cccchhhhccCCCCCCH--HHHHHHHHHHHHHcCCCCCCC---ccHHhh
Q psy16214 327 AEKIYKMDNSRENHNFLEEAKRLLKRS----EVKDYYKILGVTKNASS--DDIKKAYRKRALVHHPDRHTN---ATQAQK 397 (470)
Q Consensus 327 ~~~a~~~~p~~~~~~~l~~~~~~~~~~----~~~~~y~~lg~~~~~~~--~ei~~ay~~~~~~~~pd~~~~---~~~~~~ 397 (470)
+..+++++|+ ++..+..+++..+... ...+|-+.+.+..+-+. +-+.+|-|-+-..-.-|-.+- .+.+.+
T Consensus 330 C~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsK 408 (504)
T KOG0624|consen 330 CKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASK 408 (504)
T ss_pred HHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccH
Confidence 9999999994 5556666776665432 34566677666554322 111222111111111110000 123446
Q ss_pred HHHHHHHHHHHHHH--hhcCChh
Q psy16214 398 LEQEKLFKEVGEAY--GILSDPT 418 (470)
Q Consensus 398 ~~~~~~~~~i~~ay--~~l~d~~ 418 (470)
.++.+.|++++..+ +-..|++
T Consensus 409 qEI~KAYRKlAqkWHPDNFqdEe 431 (504)
T KOG0624|consen 409 QEITKAYRKLAQKWHPDNFQDEE 431 (504)
T ss_pred HHHHHHHHHHHHhcCCccccCHH
Confidence 67788888888877 5677776
No 20
>KOG0547|consensus
Probab=99.96 E-value=3.4e-26 Score=203.36 Aligned_cols=309 Identities=18% Similarity=0.170 Sum_probs=269.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHH------------------H
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLA------------------V 65 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a------------------l 65 (470)
+--|-+++-+|...|+|++.++..+++++++|+.+.+++.++.++..+|++.+|+.+..-. +
T Consensus 149 piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~L 228 (606)
T KOG0547|consen 149 PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVL 228 (606)
T ss_pred chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHH
Confidence 5567889999999999999999999999999999999999999999999999998755322 1
Q ss_pred hc--------------CCC-------------------------------------------------------------
Q psy16214 66 SL--------------DPR------------------------------------------------------------- 70 (470)
Q Consensus 66 ~~--------------~p~------------------------------------------------------------- 70 (470)
.. .|.
T Consensus 229 kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~ 308 (606)
T KOG0547|consen 229 KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLG 308 (606)
T ss_pred HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhh
Confidence 10 000
Q ss_pred -------C---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214 71 -------F---------SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDY 134 (470)
Q Consensus 71 -------~---------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 134 (470)
+ +.++...|..+.-.|++-.|...|+.+++++|.+...+..+ |..+....+.
T Consensus 309 ~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~------------a~~y~d~~~~ 376 (606)
T KOG0547|consen 309 SESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKR------------AAAYADENQS 376 (606)
T ss_pred hhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHH------------HHHHhhhhcc
Confidence 2 44666677777788999999999999999999988875444 4447778888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214 135 RTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK 214 (470)
Q Consensus 135 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 214 (470)
++-...|+++..++|.++.+++.+|.+++-++++++|+..|++++.++|++.-++..++.+.+++++++++...|+.+.+
T Consensus 377 ~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk 456 (606)
T KOG0547|consen 377 EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK 456 (606)
T ss_pred HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc--hHHHHHHHHHH-HHHcCCHHHHHH
Q psy16214 215 LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI--NSKLLHNRATV-LFKMGKYNEAIA 291 (470)
Q Consensus 215 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~la~~-~~~~g~~~~A~~ 291 (470)
..|+.++++..+ |.++..+++++.|++.|.+++.+.|....+ .+..+.+.|.+ ....+++..|+.
T Consensus 457 kFP~~~Evy~~f------------AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~ 524 (606)
T KOG0547|consen 457 KFPNCPEVYNLF------------AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAEN 524 (606)
T ss_pred hCCCCchHHHHH------------HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHH
Confidence 999999999999 999999999999999999999999982211 12223333333 235589999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 292 DCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 292 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++++|++++|..-.++..+|.+..++|+.++|++.|+++..+..+
T Consensus 525 Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 525 LLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988765
No 21
>KOG1155|consensus
Probab=99.96 E-value=4.5e-25 Score=195.10 Aligned_cols=302 Identities=15% Similarity=0.061 Sum_probs=185.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHH-----------------------------HHHHHHcCC
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNR-----------------------------AACYMMLGM 53 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----------------------------a~~~~~~g~ 53 (470)
++-.++..|.++.+.|..+.|+..+..++...|-+..+|..+ +.++..+.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 345688899999999999999999999999888765555444 344445556
Q ss_pred hHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16214 54 YTYALDDAKLAVSL-DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAN 132 (470)
Q Consensus 54 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 132 (470)
.++++..++..+.. -|.+...-...|.+.....++++|+..|+.+.+.+|-..+-...+..+......-
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~---------- 312 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK---------- 312 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh----------
Confidence 78888888888887 7888888889999999999999999999999999997766665555554333221
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q psy16214 133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL 212 (470)
Q Consensus 133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 212 (470)
.+-.-+...+..++.-.++....+|..|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|++|
T Consensus 313 --skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 --SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred --HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 111111223333344444444445555555555555555555555555555555555555555555555555555555
Q ss_pred HhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHH
Q psy16214 213 LKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIAD 292 (470)
Q Consensus 213 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (470)
++++|.+..+|..+ |.+|.-++...=|+-+|++|+...|. .+.+|..+|.||.++++.++|+.+
T Consensus 391 vdi~p~DyRAWYGL------------GQaYeim~Mh~YaLyYfqkA~~~kPn----DsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 391 VDINPRDYRAWYGL------------GQAYEIMKMHFYALYYFQKALELKPN----DSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred HhcCchhHHHHhhh------------hHHHHHhcchHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHhccHHHHHHH
Confidence 55555555555554 55555555555555555555555555 233455555555555555555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
|.+++.....+..++..+|.+|.++++.++|..+|++.++
T Consensus 455 ykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 455 YKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555555544555555555555555555555555555554
No 22
>KOG2002|consensus
Probab=99.96 E-value=1.2e-24 Score=208.51 Aligned_cols=346 Identities=18% Similarity=0.176 Sum_probs=299.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
++-.++-+|...+..|+|..|+.+|..++.++|.. ++....+|.|++.+++.+.|+..|+++++++|.++.++..||.+
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~ 242 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEV 242 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 45578888999999999999999999999999985 67889999999999999999999999999999999999999988
Q ss_pred HHHcCC---hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-------------------------HHHHHHHhcCC
Q psy16214 82 NIALGD---APTARSNLKALQELDPDNPAIAQESKALETMAKNF-------------------------EGASKAFEAND 133 (470)
Q Consensus 82 ~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~-------------------------~~a~~~~~~~~ 133 (470)
-....+ +..+...+.++...+|.||.+...|+..+...+++ ..|..+..+|+
T Consensus 243 ~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 243 DLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred HHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 776655 67899999999999999999998888877544443 44555566799
Q ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC----ChHHHHHH
Q psy16214 134 YRTAMFYLDRAMDQGVAS-KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD----KMDLAVNH 208 (470)
Q Consensus 134 ~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~ 208 (470)
+++|..+|..++..+|++ .-.++.+|..++..|+++.|+.+|+++++..|++.+....+|.+|...+ ..+.|..+
T Consensus 323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 999999999999999988 7788899999999999999999999999999999999999999998876 56889999
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHH--------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q psy16214 209 FQLLLKLAPDHAKAKETYKRAKLL--------------------------KAKKEEGNEKFVAGKNQEAFDIYTEALKI- 261 (470)
Q Consensus 209 ~~~~l~~~p~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~- 261 (470)
+.++++..|.+..+|..+.++... .-..+.|..++..|++.+|...+..|+..
T Consensus 403 l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 403 LGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 999999999999988877655321 12234588899999999999999999866
Q ss_pred ----cccC-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 262 ----DARN-ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 262 ----~p~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+++. ........+++|.++-.+++++.|.+.|..++..+|.++.++.++|......++..+|...++.++.++.+
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 2222 12234568999999999999999999999999999999999999998888889999999999999999987
Q ss_pred -hhHHHHHHHHHH
Q psy16214 337 -RENHNFLEEAKR 348 (470)
Q Consensus 337 -~~~~~~l~~~~~ 348 (470)
++++.++.....
T Consensus 563 np~arsl~G~~~l 575 (1018)
T KOG2002|consen 563 NPNARSLLGNLHL 575 (1018)
T ss_pred CcHHHHHHHHHHH
Confidence 788888875543
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=4.7e-25 Score=224.69 Aligned_cols=320 Identities=13% Similarity=0.014 Sum_probs=258.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+.....-..++...|++++|+..|.+++..+|..+.++..+|.++...|++++|+..++++++++|.++.++..++.++.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455556778889999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA 163 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 163 (470)
..|++++|+..++++++..|+++. +..++.+ +...|++++|+..++++++..|++..++..++.++.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~------------l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLALAYV------------YKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH------------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999 8666665 667899999999999999999999999999999887
Q ss_pred HcCCHHHHH----------------------------------------------HHHHHHhhcCCCChHH-------HH
Q psy16214 164 HLNRLQEAQ----------------------------------------------EIANSILATDKQNPDA-------VF 190 (470)
Q Consensus 164 ~~~~~~~A~----------------------------------------------~~~~~~l~~~p~~~~~-------~~ 190 (470)
..+..++|+ ..++.+++..|.++.. ..
T Consensus 162 ~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 162 NNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred HCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 777766544 4444444433333322 11
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhC---CChHHHHH---------------HHHHHHH---------HHHHHHHHHHHH
Q psy16214 191 VRGLCLYYDDKMDLAVNHFQLLLKLA---PDHAKAKE---------------TYKRAKL---------LKAKKEEGNEKF 243 (470)
Q Consensus 191 ~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~---------------~~~~~~~---------~~~~~~~~~~~~ 243 (470)
....+++..|++++|+..|+++++.. |.+...+. .+..+.. .......+.++.
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 11223467799999999999999886 33322211 1111110 011222345677
Q ss_pred hcCCHHHHHHHHHHHHhhcccCcc-----------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214 244 VAGKNQEAFDIYTEALKIDARNIN-----------INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK 312 (470)
Q Consensus 244 ~~~~~~~A~~~~~~al~~~p~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 312 (470)
..+++++|+..++++....|.... ....++..++.++...|++++|+..+++++...|.++.++..+|.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 889999999999998888764221 023567889999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 313 CFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 313 ~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++...|++++|+..++++++++|+
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999997
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=7.2e-25 Score=208.72 Aligned_cols=277 Identities=13% Similarity=0.003 Sum_probs=243.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALET 117 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 117 (470)
....+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..... . ..
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~--~~--- 108 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ-R--LL--- 108 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-H--HH---
Confidence 45567779999999999999999999999999999999999999999999999999999998854332211 0 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH-----HHHHH
Q psy16214 118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD-----AVFVR 192 (470)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~l 192 (470)
.....+..+...|++++|+..+.++++..|....++..++.++...|++++|+..+.++++..|.+.. .+..+
T Consensus 109 --~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 109 --ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 12344556788899999999999999999999999999999999999999999999999998887633 56788
Q ss_pred HHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHH
Q psy16214 193 GLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKL 272 (470)
Q Consensus 193 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 272 (470)
|.++...|++++|+..++++++..|++..++..+ |.++...|++++|+..+++++..+|.+ ...+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~ 251 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILL------------GDLALAQGDYAAAIEALERVEEQDPEY---LSEV 251 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHChhh---HHHH
Confidence 9999999999999999999999999988887777 999999999999999999999988764 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChh
Q psy16214 273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE 338 (470)
Q Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 338 (470)
+..++.++...|++++|+..++++++..|+... +..++.++...|++++|+..++++++..|+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 788999999999999999999999999998754 48999999999999999999999999999743
No 25
>KOG1126|consensus
Probab=99.96 E-value=6.5e-27 Score=216.09 Aligned_cols=272 Identities=15% Similarity=0.109 Sum_probs=253.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL 85 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 85 (470)
.+..+|..||..++|++|..+|+.+-+..|-.....-....+++.+.+--+---..+..++.+|+.|+.|..+|.||..+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence 56789999999999999999999999999987777777788888888877766777889999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy16214 86 GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL 165 (470)
Q Consensus 86 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 165 (470)
++++.|+++|+++++++|...-++..+|.- +.....++.|..+|+.++..+|.+-.+|+.+|.+|.++
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE------------~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHE------------SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ 502 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCCh------------hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc
Confidence 999999999999999999998888777765 44556788889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16214 166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA 245 (470)
Q Consensus 166 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (470)
++++.|.-.|++++.++|.+..+...+|.++.+.|+.++|+..+++|+.++|.++...... +.+++..
T Consensus 503 ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~------------~~il~~~ 570 (638)
T KOG1126|consen 503 EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR------------ASILFSL 570 (638)
T ss_pred chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH------------HHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999998887 9999999
Q ss_pred CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305 (470)
Q Consensus 246 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (470)
+++++|+..+++.-++.|+ .+.+++.+|.+|.++|+.+.|+..|.-|..++|.-..
T Consensus 571 ~~~~eal~~LEeLk~~vP~----es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 571 GRYVEALQELEELKELVPQ----ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cchHHHHHHHHHHHHhCcc----hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 9999999999999999999 6778999999999999999999999999999997554
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.9e-25 Score=227.72 Aligned_cols=285 Identities=13% Similarity=0.063 Sum_probs=257.4
Q ss_pred HHHHHHHHHhhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy16214 22 KALKCYSEAISVCPN--VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQ 99 (470)
Q Consensus 22 ~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 99 (470)
.+...+.+++..+|. ++.+++++|.|+.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|++++
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 345566666777788 89999999999998 899999999999999999754 46677888889999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy16214 100 ELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL 179 (470)
Q Consensus 100 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 179 (470)
...|.+.. + +..+..+...|++++|+.++.+++...|........++......|++++|+..+++++
T Consensus 537 ~~~p~~~a-~------------~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 537 LHDMSNED-L------------LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred ccCCCcHH-H------------HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 87666543 3 2334457888999999999999999999998888777777778899999999999999
Q ss_pred hcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214 180 ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL 259 (470)
Q Consensus 180 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 259 (470)
+.+|+ +.++..+|.++...|++++|+..|++++.++|+++.++..+ |.++...|++++|+..|++++
T Consensus 604 ~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nL------------G~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 604 NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAAL------------GYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHH
Confidence 99996 99999999999999999999999999999999999999888 999999999999999999999
Q ss_pred hhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChh
Q psy16214 260 KIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE 338 (470)
Q Consensus 260 ~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 338 (470)
+..|++ +.++.++|.++..+|++++|+..|++++.+.|++..+....|.+.....+++.|.+.+++...++|..-
T Consensus 671 ~l~P~~----~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 671 KGLPDD----PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999994 567999999999999999999999999999999999999999999999999999999999999999743
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=2e-24 Score=220.32 Aligned_cols=302 Identities=12% Similarity=0.010 Sum_probs=260.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCC-------------------------h
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGM-------------------------Y 54 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~-------------------------~ 54 (470)
..+.+...+......|++.+|...|+.++...++- ......++.+|..... +
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 46778889999999999999999999999863322 2334467777766544 2
Q ss_pred ---HHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 55 ---TYALDDAKLAVSLDPR--FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF 129 (470)
Q Consensus 55 ---~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 129 (470)
..+...+.+++..+|. ++.+++.+|.|+.. +++.+|+..+.+++...|++.. ....+..+.
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-------------~L~lA~al~ 520 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-------------HRAVAYQAY 520 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-------------HHHHHHHHH
Confidence 2234445566666788 99999999999998 8999999999999999997532 233344567
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHH
Q psy16214 130 EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHF 209 (470)
Q Consensus 130 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 209 (470)
..|++++|+..+++++...|.. ..+..+|.++...|++++|+.++.++++.+|.+...+..++......|++++|+..+
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8899999999999988776664 456788999999999999999999999999999888888887778889999999999
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHH
Q psy16214 210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA 289 (470)
Q Consensus 210 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A 289 (470)
+++++.+|+ ...+..+ |.++.+.|++++|+..|++++..+|++ +.++.++|.++...|++++|
T Consensus 600 ~~AL~l~P~-~~a~~~L------------A~~l~~lG~~deA~~~l~~AL~l~Pd~----~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 600 TRSLNIAPS-ANAYVAR------------ATIYRQRHNVPAAVSDLRAALELEPNN----SNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHHHhCCC-HHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHH
Confidence 999999997 7777777 999999999999999999999999994 56799999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 290 IADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 290 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+..++++++++|+++.++.++|.++..+|++++|+..|+++++++|+
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999997
No 28
>KOG1155|consensus
Probab=99.95 E-value=2.5e-24 Score=190.36 Aligned_cols=310 Identities=16% Similarity=0.108 Sum_probs=271.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214 10 DGNTQYKLKQYSKALKCYSEAISV-CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA 88 (470)
Q Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 88 (470)
++.++......++++.-+...+.. -|.+.-.-...|.+.+...++++|+..|+..++.+|-...-.-....+++-..+-
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 455566666889999999998888 8899999999999999999999999999999999998777777777777766665
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy16214 89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL 168 (470)
Q Consensus 89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 168 (470)
.+-.-.-+.+.+++.-.++....++..+.. +++.++|+.+|+++++++|....+|..+|.-|..+.+.
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSl------------r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSL------------RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHH------------HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence 555555666777777777766666666444 35677888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248 (470)
Q Consensus 169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (470)
..|++.|+.+++++|.+..+|+.+|.+|..++-+.=|+-+|++++...|.++..|..+ |.+|.+.++.
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL------------G~CY~kl~~~ 448 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL------------GECYEKLNRL 448 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH------------HHHHHHhccH
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhCCHH
Q psy16214 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE-------KDPNYLKALSRRCKCFHALGQYK 321 (470)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~ 321 (470)
++|+++|.+++..... ...++..+|.+|.++++.++|..+|++.++ ..|....+...++.-+.+.++++
T Consensus 449 ~eAiKCykrai~~~dt----e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~ 524 (559)
T KOG1155|consen 449 EEAIKCYKRAILLGDT----EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD 524 (559)
T ss_pred HHHHHHHHHHHhcccc----chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH
Confidence 9999999999988776 457799999999999999999999999998 45667888889999999999999
Q ss_pred HHHHHHHHHHhcCCC-hhHHHHHHHHH
Q psy16214 322 ECVIDAEKIYKMDNS-RENHNFLEEAK 347 (470)
Q Consensus 322 ~A~~~~~~a~~~~p~-~~~~~~l~~~~ 347 (470)
+|..+...++.-++. .+....++++.
T Consensus 525 ~As~Ya~~~~~~~~e~eeak~LlReir 551 (559)
T KOG1155|consen 525 EASYYATLVLKGETECEEAKALLREIR 551 (559)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 999999999998766 55555555443
No 29
>KOG1173|consensus
Probab=99.94 E-value=1.1e-23 Score=191.06 Aligned_cols=289 Identities=17% Similarity=0.129 Sum_probs=233.1
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
++++.....+..++..++|.+..+.++..++.+|-+..++...--|+..+|+..+-...-.+.++..|+.+..|...|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 45666666677777777777777777777777776655554433366677776666666666677777777666555554
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214 116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC 195 (470)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 195 (470)
++-.+++.+|..++.++..++|....+|...|..+...+..++|+.+|..+-++-|......+.+|.-
T Consensus 322 ------------Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 322 ------------YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME 389 (611)
T ss_pred ------------HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 33446666666666677777777778888899999999999999999999999999999999999999
Q ss_pred HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc----cCccchHH
Q psy16214 196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA----RNININSK 271 (470)
Q Consensus 196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~ 271 (470)
|.++++++.|.++|.+++.+.|.++.+...+ |.+.+..+.|.+|+.+|+.++..-+ ..+ ....
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El------------gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p 456 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPSDPLVLHEL------------GVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEP 456 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCCcchhhhhh------------hheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhH
Confidence 9999999999999999999999999988887 9999999999999999999984322 222 2356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHH
Q psy16214 272 LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSR-ENHNFLEEAKRL 349 (470)
Q Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~ 349 (470)
++.++|.++.+++.+++|+..+++++.+.|.++.++..+|.+|..+|+++.|++.|.+++.+.|+. -+.+.|..+...
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999999999999999999999999999985 556666655433
No 30
>KOG2076|consensus
Probab=99.94 E-value=1.1e-22 Score=193.84 Aligned_cols=317 Identities=17% Similarity=0.138 Sum_probs=250.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.+..++..|+.++..|++++|..++.++|+.+|.++.+|+.+|.+|..+|+.++|+...-.|-.++|++...|..++...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK-----TYKLM 157 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~ 157 (470)
.++|++.+|.-+|.++++.+|.+.......+.+ +-+.|+...|...+.+++...|... .....
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L------------~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSL------------YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHH------------HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 999999999999999999999998876554444 5566777777777778887777221 12233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcC--CCChHHHHHHHHHHhccCChHHHHHHHHHHHh---------------------
Q psy16214 158 KAECLAHLNRLQEAQEIANSILATD--KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK--------------------- 214 (470)
Q Consensus 158 ~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--------------------- 214 (470)
.+..+...++-+.|++.++.++... -...+.+..++.+++....++.|.........
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 4566666666677777777777622 22334556666677777777766665544333
Q ss_pred -hC--CC----hHHH-HHHHH-----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy16214 215 -LA--PD----HAKA-KETYK-----------------------RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA 263 (470)
Q Consensus 215 -~~--p~----~~~~-~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 263 (470)
+. |+ +..+ ...+. ......-+.+.+..+...|++.+|+.++..+....+
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 00 00 0011 10000 001122334558999999999999999999887766
Q ss_pred cCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 264 RNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
.+ +..+|+.+|.||..+|.+++|++.|++++.+.|++.++...++.++..+|+.++|++.+.....-+
T Consensus 446 ~~---~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 446 YQ---NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred cc---chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 55 467899999999999999999999999999999999999999999999999999999999877444
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.93 E-value=4.9e-25 Score=199.04 Aligned_cols=262 Identities=19% Similarity=0.185 Sum_probs=120.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy16214 42 GNRAACYMMLGMYTYALDDAKLAVS-L-DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMA 119 (470)
Q Consensus 42 ~~~a~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 119 (470)
+.+|.+++..|++++|++.+.+.+. . .|+++..|..+|.+...+++++.|+..|++++..++.++..+..+..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l---- 87 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL---- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence 3557777777777777777755443 3 366777777777777777777777777777777776665554333322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CCChHHHHHHHHHHh
Q psy16214 120 KNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD--KQNPDAVFVRGLCLY 197 (470)
Q Consensus 120 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~ 197 (470)
+..+++++|+.++.++.+..+ ++..+.....++...++++++...++++.... +.++..|..+|.++.
T Consensus 88 ---------~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 88 ---------LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred ---------ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 345666777777766666543 35556667788899999999999999977654 678889999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q psy16214 198 YDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRA 277 (470)
Q Consensus 198 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la 277 (470)
..|+.++|+..++++++.+|+++.+...+ +.++...|+++++.+.++......|+++. ++..+|
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~~~~~~~~l------------~~~li~~~~~~~~~~~l~~~~~~~~~~~~----~~~~la 221 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPDDPDARNAL------------AWLLIDMGDYDEAREALKRLLKAAPDDPD----LWDALA 221 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT-HHHHHHH------------HHHHCTTCHHHHHHHHHHHHHHH-HTSCC----HCHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHH------------HHHHHHCCChHHHHHHHHHHHHHCcCHHH----HHHHHH
Confidence 99999999999999999999999998888 99999999999999988888888788665 488899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 278 TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
.++..+|++++|+.++++++..+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999998753
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.93 E-value=6.9e-22 Score=187.49 Aligned_cols=303 Identities=14% Similarity=0.058 Sum_probs=253.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-HHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS-KGLIRQIKCN 82 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 82 (470)
+......|...+..|+|+.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|+.. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 455678899999999999999999999999998888888999999999999999999999999999885 5666679999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----HH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKL----MK 158 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~----~~ 158 (470)
...|+++.|...++++++..|+++.++..++.+ +...|++++|+..+.+..+..+.++.... ..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~------------~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a 231 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEA------------YIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA 231 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999998777777 56678888888888888887554443321 12
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCC----CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH--HHHHHHHHH
Q psy16214 159 AECLAHLNRLQEAQEIANSILATDK----QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK--ETYKRAKLL 232 (470)
Q Consensus 159 a~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~--~~~~~~~~~ 232 (470)
..-+...+..+++...+.++....| +++.++..++..+...|++++|+..++++++..|++.... ...
T Consensus 232 ~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~------ 305 (409)
T TIGR00540 232 EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCL------ 305 (409)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHH------
Confidence 2222444455556667778877777 5899999999999999999999999999999999987532 111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHH
Q psy16214 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT--LALEKDPNYLKALSRR 310 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l 310 (470)
.......++...+++.++++++..|+++. ..++..+|+++.+.|++++|.++|+ .+++..|+... +..+
T Consensus 306 ------~~~~l~~~~~~~~~~~~e~~lk~~p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~L 376 (409)
T TIGR00540 306 ------PIPRLKPEDNEKLEKLIEKQAKNVDDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMA 376 (409)
T ss_pred ------HhhhcCCCChHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHH
Confidence 34445568889999999999999999652 2568899999999999999999999 57788888655 6699
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 311 CKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 311 a~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
|.++..+|+.++|.++|++++..
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 33
>KOG1174|consensus
Probab=99.92 E-value=3.8e-22 Score=174.19 Aligned_cols=307 Identities=11% Similarity=-0.008 Sum_probs=261.7
Q ss_pred HHHHHhcCC--HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214 11 GNTQYKLKQ--YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA 88 (470)
Q Consensus 11 g~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 88 (470)
+...+..++ +..+..++-.-...-|+|...+..+|.|++..|++.+|+..|+++..++|....+.-..|.++...|++
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence 334444444 444455555666677889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy16214 89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL 168 (470)
Q Consensus 89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 168 (470)
+.-......++.+......-|..-+. ..+..+++..|+.+.++++..+|.+...++..|.++...++.
T Consensus 283 e~~~~L~~~Lf~~~~~ta~~wfV~~~------------~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~ 350 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVKYTASHWFVHAQ------------LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERH 350 (564)
T ss_pred hhHHHHHHHHHhhhhcchhhhhhhhh------------hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccch
Confidence 98888888888877665555544333 367788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH-HHH-HhcC
Q psy16214 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG-NEK-FVAG 246 (470)
Q Consensus 169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 246 (470)
++|+-.|+.+..+.|...++|..+-.+|...|.+.+|...-+.+++.-|.+......+ | .++ ..-.
T Consensus 351 ~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~------------g~~V~~~dp~ 418 (564)
T KOG1174|consen 351 TQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF------------GTLVLFPDPR 418 (564)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh------------cceeeccCch
Confidence 9999999999999999999999999999999999999999999999999998877766 5 333 3334
Q ss_pred CHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16214 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVID 326 (470)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 326 (470)
--++|.+.+++++.+.|. ...+...++.++...|.+.+++..+++.+...|+ ...+..+|.++...+.+++|...
T Consensus 419 ~rEKAKkf~ek~L~~~P~----Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPI----YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred hHHHHHHHHHhhhccCCc----cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHH
Confidence 558899999999999999 6677889999999999999999999999999888 56889999999999999999999
Q ss_pred HHHHHhcCCCh-hHHHHHHHH
Q psy16214 327 AEKIYKMDNSR-ENHNFLEEA 346 (470)
Q Consensus 327 ~~~a~~~~p~~-~~~~~l~~~ 346 (470)
|.+|+.++|.+ ...+.+.+.
T Consensus 494 y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 494 YYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHhcCccchHHHHHHHHH
Confidence 99999999973 344555443
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=1.8e-21 Score=194.89 Aligned_cols=322 Identities=11% Similarity=0.033 Sum_probs=243.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL 85 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 85 (470)
.+..+|..+...|+|++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence 444557799999999999999999999999999999999999999999999999999999999986554 6667777677
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------------
Q psy16214 86 GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE----------------------------------- 130 (470)
Q Consensus 86 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------- 130 (470)
++..+|+..++++++.+|++.+++..+..+....+....|..+..
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 888779999999999999999887776666543333322222211
Q ss_pred ------------------------------------------cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Q psy16214 131 ------------------------------------------ANDYRTAMFYLDRAMDQG-VASKTYKLMKAECLAHLNR 167 (470)
Q Consensus 131 ------------------------------------------~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~ 167 (470)
.+++.+++..|+.+.... |-...+....|..|+..++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 144555555554444333 2233445556666666777
Q ss_pred HHHHHHHHHHHhhcCCC------ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC---------------ChHHHHHHH
Q psy16214 168 LQEAQEIANSILATDKQ------NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP---------------DHAKAKETY 226 (470)
Q Consensus 168 ~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---------------~~~~~~~~~ 226 (470)
.++|+.+|..++...|. +......+-.+++..+++++|..++++..+..| +.......
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l- 421 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL- 421 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH-
Confidence 77777777766654421 222234555666667777777777776666444 11112222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306 (470)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (470)
++.++...|++.+|.+.+++.+...|.| ..++..+|.++...|.+.+|...++.++.++|++..+
T Consensus 422 -----------~a~~~~~~gdl~~Ae~~le~l~~~aP~n----~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 422 -----------LVQSLVALNDLPTAQKKLEDLSSTAPAN----QNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred -----------HHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 3888899999999999999999999995 5669999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHH
Q psy16214 307 LSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLE 344 (470)
Q Consensus 307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~ 344 (470)
...+|.+++.++++.+|.....++++..|+......|.
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~ 524 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELD 524 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHH
Confidence 99999999999999999999999999999855444443
No 35
>KOG2003|consensus
Probab=99.92 E-value=3.7e-22 Score=176.35 Aligned_cols=189 Identities=15% Similarity=0.091 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q psy16214 132 NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL 211 (470)
Q Consensus 132 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 211 (470)
|++++|...|..++..+....++++++|..+..+|+.++|+.+|-++-.+--++.++++.++.+|..+.+..+|++.+.+
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555554444444555555555555555555555555555
Q ss_pred HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHH
Q psy16214 212 LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIA 291 (470)
Q Consensus 212 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (470)
+..+-|+++.++..+ |..|-+.|+-.+|..++-...+..|.+. .+...+|..|....-+++|+.
T Consensus 584 ~~slip~dp~ilskl------------~dlydqegdksqafq~~ydsyryfp~ni----e~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKL------------ADLYDQEGDKSQAFQCHYDSYRYFPCNI----ETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred hcccCCCCHHHHHHH------------HHHhhcccchhhhhhhhhhcccccCcch----HHHHHHHHHHHhhHHHHHHHH
Confidence 555555555554444 5555555555555555555455555432 224444555555555555555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 292 DCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 292 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+|+++--+.|+...-....+.|+.+.|+|.+|...|+..-...|.
T Consensus 648 y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 648 YFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 555555555555555555555555555555555555555555553
No 36
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.1e-25 Score=195.90 Aligned_cols=99 Identities=45% Similarity=0.702 Sum_probs=80.3
Q ss_pred ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcC-CC
Q psy16214 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIME-DS 433 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~-~~ 433 (470)
.++||++|||+++|+.+|||+|||++|++||||+++. .++++++|++|++||||||||+||+.||..++... .+
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g-----~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~g 77 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG-----DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAG 77 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccC
Confidence 4789999999999999999999999999999999995 36899999999999999999999999998666543 23
Q ss_pred CCCC--CCccchhHHHHHHHhcCCCCC
Q psy16214 434 GMGG--HAGANLFEQHMFQTYFDPGCR 458 (470)
Q Consensus 434 ~~~~--~~~~~~~~~~~~~~~~~~~~~ 458 (470)
|++| +.+++...+++|.+||+||++
T Consensus 78 g~gg~g~~~fgg~~~DIF~~~FgGg~~ 104 (371)
T COG0484 78 GFGGFGFGGFGGDFGDIFEDFFGGGGG 104 (371)
T ss_pred CcCCCCcCCCCCCHHHHHHHhhcCCCc
Confidence 3332 232221128999999975544
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=1e-20 Score=189.56 Aligned_cols=323 Identities=11% Similarity=-0.040 Sum_probs=247.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.++..+..+...++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+..+++++.-.|.....+..+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 56788999999999999999999999999999999655558888999999999999999999944455555666668899
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh---------------------cCCHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE---------------------ANDYRTAMFYL 141 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------~~~~~~A~~~~ 141 (470)
...|++++|++.|+++++.+|+++.++..++.++...+....|...+. .++..+|+..+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999999999999999999888787766666666555433 25666699999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-----------------------------------------------
Q psy16214 142 DRAMDQGVASKTYKLMKAECLAHLNRLQEAQEI----------------------------------------------- 174 (470)
Q Consensus 142 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~----------------------------------------------- 174 (470)
+++++.+|++..++..+..++...|-...|.+.
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 999999999988877777666665554433333
Q ss_pred -HHHHhhcCCCCh------------------------------------------HHHHHHHHHHhccCChHHHHHHHHH
Q psy16214 175 -ANSILATDKQNP------------------------------------------DAVFVRGLCLYYDDKMDLAVNHFQL 211 (470)
Q Consensus 175 -~~~~l~~~p~~~------------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~ 211 (470)
++.++...+..| .+....|..|+..+++++|+.+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 333333222211 1223344445555555555555555
Q ss_pred HHhhCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc------------cCccchHHHHHH
Q psy16214 212 LLKLAPD----HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA------------RNININSKLLHN 275 (470)
Q Consensus 212 ~l~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~~~~~ 275 (470)
++.-.|. .... ........+++..+++++|..++++.....| .|++ ...+...
T Consensus 353 ~~~~~~~~~~~~~~~----------~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d-~~~~~~l 421 (822)
T PRK14574 353 LYYSDGKTFRNSDDL----------LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD-WIEGQTL 421 (822)
T ss_pred HhhccccccCCCcch----------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc-HHHHHHH
Confidence 5543321 0000 0012237788999999999999999987555 1222 3577888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 276 RATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 276 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++.++...|++.+|++.+++.+...|.++.++..+|.++...|.+..|...++.+..++|.
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=99.91 E-value=9.3e-22 Score=193.48 Aligned_cols=263 Identities=16% Similarity=0.048 Sum_probs=200.6
Q ss_pred HHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHhcCCCChHH
Q psy16214 41 YGNRAACYMML---GMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG---------DAPTARSNLKALQELDPDNPAI 108 (470)
Q Consensus 41 ~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~l~~~p~~~~~ 108 (470)
++.+|...+.. +.+++|+..|+++++++|+++.++..+|.++..++ ++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 44455544332 34678888888888888888888888888776443 3788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHH
Q psy16214 109 AQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDA 188 (470)
Q Consensus 109 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 188 (470)
+..++.+ +...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++++|.++..
T Consensus 341 ~~~lg~~------------~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 341 LGLLGLI------------NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred HHHHHHH------------HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 8766665 5556788888888888888888888888888999999999999999999999999988877
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc
Q psy16214 189 VFVRGLCLYYDDKMDLAVNHFQLLLKLA-PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN 267 (470)
Q Consensus 189 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 267 (470)
+..++.+++..|++++|+..+++++... |+++..+..+ |.++...|++++|...+.++....|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~l------------a~~l~~~G~~~eA~~~~~~~~~~~~~--- 473 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQ------------VMFLSLKGKHELARKLTKEISTQEIT--- 473 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHH------------HHHHHhCCCHHHHHHHHHHhhhccch---
Confidence 7777777777888899999998888764 6777777776 88888889999999988887777776
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 268 INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
...++..++.++...|+ +|...+++.++.......-......++.-.|+.+.|..+ +++.+..
T Consensus 474 -~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 474 -GLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred -hHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 34557777888887774 666666666554333222233377888888888887777 6666554
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=4.4e-24 Score=192.82 Aligned_cols=263 Identities=23% Similarity=0.227 Sum_probs=120.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAISV--CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
.+..|..++..|++++|++.+.+.+.. .|+++..|..+|.+...+++++.|+..|++++..++.++..+..++.+ ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 346699999999999999999776554 488999999999999999999999999999999999999999999988 79
Q ss_pred cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q psy16214 85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG--VASKTYKLMKAECL 162 (470)
Q Consensus 85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~ 162 (470)
.+++++|+.++.++.+..+ ++..+.....+ +...++++++...++++.... +.++.++..+|.++
T Consensus 90 ~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDG-DPRYLLSALQL------------YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY 156 (280)
T ss_dssp -----------------------------H-------------HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred ccccccccccccccccccc-ccchhhHHHHH------------HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 9999999999999887654 34444333332 566788999999999977654 67889999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK 242 (470)
Q Consensus 163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (470)
...|++++|+.+++++++.+|+++.++..++.++...|+.+++...+.......|+++..+..+ |.++
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~l------------a~~~ 224 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDAL------------AAAY 224 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHH------------HHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHH------------HHHh
Confidence 9999999999999999999999999999999999999999999999999888888888888888 9999
Q ss_pred HhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 243 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
...|++++|+.+|++++...|+++ .++..+|.++...|+.++|..+..+++..
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~d~----~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPDDP----LWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT-H----HHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccc----ccccccccccccccccccccccccccccc
Confidence 999999999999999999999954 56899999999999999999999988753
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.91 E-value=1.6e-20 Score=177.16 Aligned_cols=300 Identities=13% Similarity=0.079 Sum_probs=241.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH-HHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKG-LIRQIKC 81 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~ 81 (470)
.+...+..|...+..|+|++|.+...++-+..+.....+...+.+....|+++.|..++.++.+.+|+...+ ....+.+
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 345678889999999999999988888766543333344444666699999999999999999999998544 3455999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH-----
Q psy16214 82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKL----- 156 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~----- 156 (470)
+...|+++.|...++++.+..|+++.+...+..+ +...|++++|+..+.++.+..+.++....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~------------~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~ 230 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA------------YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQ 230 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998877777 45557888888888888877665543222
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Q psy16214 157 ---MKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLK 233 (470)
Q Consensus 157 ---~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 233 (470)
.+........+-+...+.++...+..|+++.+...++..+...|+.++|...++++++..| ++.....+
T Consensus 231 a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~------- 302 (398)
T PRK10747 231 AWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLI------- 302 (398)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHH-------
Confidence 1122222334455566666666667788999999999999999999999999999999555 44433333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC 313 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (470)
+. ...++.+++++..++.++..|++ +.++..+|.++...+++.+|.++|+++++..|++ ..+..++.+
T Consensus 303 -----~~--l~~~~~~~al~~~e~~lk~~P~~----~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~ 370 (398)
T PRK10747 303 -----PR--LKTNNPEQLEKVLRQQIKQHGDT----PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADA 370 (398)
T ss_pred -----hh--ccCCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHH
Confidence 33 35599999999999999999995 4569999999999999999999999999999996 456789999
Q ss_pred HHHhCCHHHHHHHHHHHHhcC
Q psy16214 314 FHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 314 ~~~~g~~~~A~~~~~~a~~~~ 334 (470)
+..+|+.++|..+|++++.+.
T Consensus 371 ~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 371 LDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999998764
No 41
>KOG1125|consensus
Probab=99.91 E-value=1.1e-22 Score=185.43 Aligned_cols=260 Identities=17% Similarity=0.165 Sum_probs=195.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy16214 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD 87 (470)
Q Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 87 (470)
+..|..+++.|+..+|+-+|+.+++.+|.++++|..||.+....++-..|+..+++|++++|++.+++..||.+|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy16214 88 APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR 167 (470)
Q Consensus 88 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~ 167 (470)
-.+|+.++.+-+...|........ -..+.+.. ...+.+...
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a-----------------~~~~~~~~---------~~s~~~~~~------------- 409 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSA-----------------GENEDFEN---------TKSFLDSSH------------- 409 (579)
T ss_pred HHHHHHHHHHHHHhCccchhcccc-----------------CccccccC---------CcCCCCHHH-------------
Confidence 999999999888877653221000 00000000 001111111
Q ss_pred HHHHHHHHHHHhhcCC--CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16214 168 LQEAQEIANSILATDK--QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA 245 (470)
Q Consensus 168 ~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (470)
+..-.+.|-.+....| .++++...||.+|...|+|++|+.+|+.+|...|++...|..+ |-++...
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL------------GAtLAN~ 477 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL------------GATLANG 477 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh------------hHHhcCC
Confidence 1223344555555666 6788888888888888888888888888888888888888888 8888888
Q ss_pred CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHH
Q psy16214 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY----------LKALSRRCKCFH 315 (470)
Q Consensus 246 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~ 315 (470)
.+.++|+..|++|+++.|. ..++++++|.+++.+|.|++|+++|-.||.+.+.. -.+|-.|=.++.
T Consensus 478 ~~s~EAIsAY~rALqLqP~----yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als 553 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQLQPG----YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALS 553 (579)
T ss_pred cccHHHHHHHHHHHhcCCC----eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHH
Confidence 8888888888888888888 55678888888888888888888888888875541 235555555555
Q ss_pred HhCCHHH
Q psy16214 316 ALGQYKE 322 (470)
Q Consensus 316 ~~g~~~~ 322 (470)
.+++.+.
T Consensus 554 ~~~~~D~ 560 (579)
T KOG1125|consen 554 AMNRSDL 560 (579)
T ss_pred HcCCchH
Confidence 5665553
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.90 E-value=3.8e-21 Score=189.19 Aligned_cols=228 Identities=13% Similarity=-0.014 Sum_probs=201.8
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy16214 86 GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL 165 (470)
Q Consensus 86 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 165 (470)
+++++|+..|+++++++|+++.++..++.++...+.... ....+++++|+..++++++.+|+++.++..+|.++...
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~---~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI---FDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC---cccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 467999999999999999999999999988766543211 12456789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16214 166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA 245 (470)
Q Consensus 166 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (470)
|++++|+..++++++++|+++.+++.+|.++...|++++|+..++++++++|.++.....+ +.+++..
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~------------~~~~~~~ 419 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK------------LWITYYH 419 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH------------HHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999988765554 6667788
Q ss_pred CCHHHHHHHHHHHHhhc-ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16214 246 GKNQEAFDIYTEALKID-ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV 324 (470)
Q Consensus 246 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 324 (470)
|++++|+..+++++... |+ .+.++.++|.++..+|++++|...+.++....|....++..++.+|...|+ +|.
T Consensus 420 g~~eeA~~~~~~~l~~~~p~----~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~ 493 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQD----NPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RAL 493 (553)
T ss_pred cCHHHHHHHHHHHHHhcccc----CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHH
Confidence 99999999999999875 55 345689999999999999999999999999999999999999999999884 788
Q ss_pred HHHHHHHhcC
Q psy16214 325 IDAEKIYKMD 334 (470)
Q Consensus 325 ~~~~~a~~~~ 334 (470)
..++++++..
T Consensus 494 ~~l~~ll~~~ 503 (553)
T PRK12370 494 PTIREFLESE 503 (553)
T ss_pred HHHHHHHHHh
Confidence 8777776643
No 43
>KOG0495|consensus
Probab=99.90 E-value=3.7e-20 Score=170.61 Aligned_cols=321 Identities=17% Similarity=0.071 Sum_probs=267.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
-..|..-+..+...+-++-|+..|..+|+..|....+|...+..--.-|..++-...+++++..-|.....|+..+..+.
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 35688889999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh---------------------cCCHHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE---------------------ANDYRTAMFYLD 142 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------~~~~~~A~~~~~ 142 (470)
..|+...|...+..+++.+|++.++|..-..+......++.|..++. .++.++|+.+++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999887777766666666666544 388999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHH
Q psy16214 143 RAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA 222 (470)
Q Consensus 143 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 222 (470)
.+++..|+...+|+.+|.++.+.++.+.|...|...++..|+.+..|..++.+-...|+.-.|...++++.-.+|++...
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~l 755 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALL 755 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc--------------------------hHHHHHHH
Q psy16214 223 KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI--------------------------NSKLLHNR 276 (470)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------------------~~~~~~~l 276 (470)
|... ...-++.|+.+.|.....+|++.+|++..+ ++.++...
T Consensus 756 wle~------------Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllai 823 (913)
T KOG0495|consen 756 WLES------------IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAI 823 (913)
T ss_pred HHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHH
Confidence 8776 777888999999999999999999885322 23444455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 277 ATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 277 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
|..+....++++|.++|.+++..+|++.++|...-..+...|.-++-.+.+.++..-.|.
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 555555555555555555555555555555555555555555555555555555555554
No 44
>KOG2076|consensus
Probab=99.89 E-value=1.4e-19 Score=172.99 Aligned_cols=298 Identities=15% Similarity=0.093 Sum_probs=229.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALET 117 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 117 (470)
...+...|..++..|++++|...+..+|..+|.++.+|+.||.+|.++|+.++|...+-.|-.++|.+.+.|..++.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl-- 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL-- 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 456677788888999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh-----HHHHHH
Q psy16214 118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP-----DAVFVR 192 (470)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l 192 (470)
..+.|++.+|.-+|.++++.+|.+....+.++.+|.++|+...|...+.+++...|... +.....
T Consensus 217 ----------s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 217 ----------SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred ----------HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 55668888999999999999999999999999999999999999999999999999321 233445
Q ss_pred HHHHhccCChHHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHHHH-----------------------------------
Q psy16214 193 GLCLYYDDKMDLAVNHFQLLLKLAPD--HAKAKETYKRAKLLKAK----------------------------------- 235 (470)
Q Consensus 193 a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~----------------------------------- 235 (470)
+..+...++-+.|++.+..++....+ .......+..+......
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 67778888889999999999883221 11112222100000000
Q ss_pred ----------------HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 236 ----------------KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 236 ----------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
...+.+..+.....+++..+..--...|. ....++..++.++...|++.+|+.++..++..
T Consensus 367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~---d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVS---DDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChh---hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 00011222222333333322221111122 25688999999999999999999999999887
Q ss_pred CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHh
Q psy16214 300 DPN-YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLL 350 (470)
Q Consensus 300 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~ 350 (470)
.+. +..+|+.+|.||..+|.+++|+.+|++++.+.|+ .+++-.|...+..+
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQL 496 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc
Confidence 654 3779999999999999999999999999999998 66666665554443
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.89 E-value=2.5e-20 Score=168.52 Aligned_cols=232 Identities=14% Similarity=0.067 Sum_probs=114.5
Q ss_pred ChHHHHHHHHHHHhcC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 53 MYTYALDDAKLAVSLD---PR-FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA 128 (470)
Q Consensus 53 ~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 128 (470)
..+.++..+.+++... |. .+..|+.+|.++...|++++|+..|+++++++|+++.++..++.+ +
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~------------~ 108 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIY------------L 108 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH------------H
Confidence 4444555555555322 21 134455555555555555555555555555555554443332222 2
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHH
Q psy16214 129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNH 208 (470)
Q Consensus 129 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 208 (470)
...|++++|+..++++++++|++..++..+|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKEN 187 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHH
Confidence 233333333333333344444444455566666666777777777777777777766532111 1223345566777777
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHH----hhcccCccchHHHHHHHHHHHHH
Q psy16214 209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEA--FDIYTEAL----KIDARNININSKLLHNRATVLFK 282 (470)
Q Consensus 209 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A--~~~~~~al----~~~p~~~~~~~~~~~~la~~~~~ 282 (470)
+.+.+...+..... . +...+..|++.++ +..+.+.+ ++.|. ...+|+++|.++..
T Consensus 188 l~~~~~~~~~~~~~---~------------~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~----~~ea~~~Lg~~~~~ 248 (296)
T PRK11189 188 LKQRYEKLDKEQWG---W------------NIVEFYLGKISEETLMERLKAGATDNTELAER----LCETYFYLAKYYLS 248 (296)
T ss_pred HHHHHhhCCccccH---H------------HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHHHHHHH
Confidence 75555432221111 1 3333334443222 22222222 22222 34567777777777
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Q psy16214 283 MGKYNEAIADCTLALEKDP-NYLKALSRRCKCFHA 316 (470)
Q Consensus 283 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 316 (470)
+|++++|+.+|+++++.+| ++++..+.+..+...
T Consensus 249 ~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 249 LGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 7777777777777777765 445544444444433
No 46
>KOG0548|consensus
Probab=99.89 E-value=1.7e-19 Score=163.30 Aligned_cols=330 Identities=21% Similarity=0.271 Sum_probs=227.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy16214 41 YGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120 (470)
Q Consensus 41 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 120 (470)
.-..|...+..|+|+.|+..|..+|.++|.+...|.+...+|..+|+|++|++.-.+.++++|+-+..|..+|..
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa----- 79 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAA----- 79 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHH-----
Confidence 345688889999999999999999999999999999999999999999999999999999999999988777666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------HHHHHHHHH
Q psy16214 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR------------------------LQEAQEIAN 176 (470)
Q Consensus 121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~------------------------~~~A~~~~~ 176 (470)
++-.|+|++|+..|.+.++.+|++..+...++.++..... .+.+.....
T Consensus 80 -------~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 80 -------LFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred -------HHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 5566777777777777777777777776666666522100 000111111
Q ss_pred HHhhcCCCC--------------------------------------------------------------hHHHHHHHH
Q psy16214 177 SILATDKQN--------------------------------------------------------------PDAVFVRGL 194 (470)
Q Consensus 177 ~~l~~~p~~--------------------------------------------------------------~~~~~~la~ 194 (470)
+.+..+|.+ ....-.+|.
T Consensus 153 ~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 111111100 012345667
Q ss_pred HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHH----------------------------H-HHHHHHHHHHHHHhc
Q psy16214 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA----------------------------K-LLKAKKEEGNEKFVA 245 (470)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~----------------------------~-~~~~~~~~~~~~~~~ 245 (470)
..+...++..|+++|..+++++ .+.........+ . ........|..+...
T Consensus 233 aaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 7777777777777777777766 333222211110 0 111122247888999
Q ss_pred CCHHHHHHHHHHHHhhccc-----------------------CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214 246 GKNQEAFDIYTEALKIDAR-----------------------NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302 (470)
Q Consensus 246 ~~~~~A~~~~~~al~~~p~-----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (470)
++++.|+.+|.+++...-+ ++. .+.--...|..++..|+|..|+..|.++|..+|+
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe-~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPE-KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChh-HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 9999999999998854322 111 1334445689999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHH--HHHHhhccc--ccchhhhccCCCCCCHHHHHHHHH
Q psy16214 303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEE--AKRLLKRSE--VKDYYKILGVTKNASSDDIKKAYR 378 (470)
Q Consensus 303 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~--~~~~~~~~~--~~~~y~~lg~~~~~~~~ei~~ay~ 378 (470)
++.+|.++|.||..+|.+..|+.+.+++++++|+ -+...+++ +...+++-. ...|.+.+.+. .+..++...|+
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~ 467 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYR 467 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 9999999999999999999999999999999996 22223333 333333221 23344444443 55567777777
Q ss_pred HHHHHcCCC
Q psy16214 379 KRALVHHPD 387 (470)
Q Consensus 379 ~~~~~~~pd 387 (470)
+.....+-+
T Consensus 468 rc~~a~~~~ 476 (539)
T KOG0548|consen 468 RCVEAQRGD 476 (539)
T ss_pred HHHHHhhcC
Confidence 766655333
No 47
>KOG1174|consensus
Probab=99.88 E-value=5.3e-20 Score=160.94 Aligned_cols=279 Identities=14% Similarity=0.049 Sum_probs=254.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
++..+..+|.+++..|++.+|+..|+++..++|.+....-..|..+...|+++.--......+..+.....-|+--+..+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 56778899999999999999999999999999999999999999999999999999999999998888888899899999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL 162 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 162 (470)
+..+++..|+.+-++++..+|.+..++...|.+ ++..++.++|+-.|+.+..+.|.....+..+..+|
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~l------------L~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRL------------LIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHH------------HHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 999999999999999999999999998666666 67778889999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChHHHHHHH-HHHhc-cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214 163 AHLNRLQEAQEIANSILATDKQNPDAVFVRG-LCLYY-DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN 240 (470)
Q Consensus 163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 240 (470)
+..|++.+|.-..+.+++.-|.++.++..+| .++.. ----++|.+.+++++.+.|....+...+ +.
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~------------AE 446 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLI------------AE 446 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHH------------HH
Confidence 9999999999999999999999999999997 44443 3446899999999999999999988887 99
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214 241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR 310 (470)
Q Consensus 241 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (470)
.+...|.+..++.++++.+...|+. .++..+|.++...+.+.+|+++|..|+.++|++..++..+
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~~~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLIIFPDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHhhCccchHHHHHHHHHhhcccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 9999999999999999999999874 5688999999999999999999999999999987665443
No 48
>KOG1129|consensus
Probab=99.88 E-value=1.6e-20 Score=159.46 Aligned_cols=265 Identities=15% Similarity=0.118 Sum_probs=232.1
Q ss_pred HHHHHcCChHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 46 ACYMMLGMYTYALDDAKLAVSLD---PR-------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
.+++...+...|-..+...++++ |. +.+-...+|+||+.+|-+.+|.+.++..++..|. ++.+..++.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHH
Confidence 45667777777777666665542 21 2233457899999999999999999999987764 4555555555
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214 116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC 195 (470)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 195 (470)
+....++..|+..+...++..|.+...+...|+++..++++++|+++|+.+++.+|.+.++.-.+|.-
T Consensus 266 ------------Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 266 ------------YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG 333 (478)
T ss_pred ------------HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence 44557788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHH
Q psy16214 196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN 275 (470)
Q Consensus 196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 275 (470)
|+..++++-|+.+|++++.+--.+++...++ |.+.+..++++-++..|++++....+.. ..+.+|++
T Consensus 334 yfY~~~PE~AlryYRRiLqmG~~speLf~Ni------------gLCC~yaqQ~D~~L~sf~RAlstat~~~-~aaDvWYN 400 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMGAQSPELFCNI------------GLCCLYAQQIDLVLPSFQRALSTATQPG-QAADVWYN 400 (478)
T ss_pred cccCCChHHHHHHHHHHHHhcCCChHHHhhH------------HHHHHhhcchhhhHHHHHHHHhhccCcc-hhhhhhhc
Confidence 9999999999999999999999999999888 9999999999999999999997754322 25789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 276 RATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 276 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+|.+....|++.-|..+|+-++..+|++.+++.++|.+-.+.|+.++|..+++.+..+.|.
T Consensus 401 lg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 401 LGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred cceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 49
>KOG1173|consensus
Probab=99.88 E-value=1.6e-19 Score=164.19 Aligned_cols=336 Identities=15% Similarity=0.087 Sum_probs=272.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC-----------------ChHHHHHHHHHHH--
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-----------------MYTYALDDAKLAV-- 65 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-----------------~~~~A~~~~~~al-- 65 (470)
...+.+|.+|....+.++|...|.+|+..++.+.++...+-...+..- ...+-++.+-++.
T Consensus 142 sic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~ 221 (611)
T KOG1173|consen 142 SICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLC 221 (611)
T ss_pred ceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhh
Confidence 346778999999999999999999999999988766655544433222 1111111111111
Q ss_pred --------hcCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 66 --------SLDP--------RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF 129 (470)
Q Consensus 66 --------~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 129 (470)
..+| ++.......+..+...+++.+..+.....++.+|-+...+-... | .++
T Consensus 222 k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i-----------a-~l~ 289 (611)
T KOG1173|consen 222 KNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI-----------A-CLY 289 (611)
T ss_pred hhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH-----------H-HHH
Confidence 0122 25667788899999999999999999999999998887653221 1 356
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHH
Q psy16214 130 EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHF 209 (470)
Q Consensus 130 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 209 (470)
+.|+..+-...-.++++..|+.+-.|+..|..|...|++++|..++.++..++|....+|...|..+...+..++|+.+|
T Consensus 290 el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 290 ELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred HhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHH
Confidence 66777777777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHH
Q psy16214 210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA 289 (470)
Q Consensus 210 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A 289 (470)
..|.++-|........+ |.-|...++++-|...|.+|+.+.|.+|- ++..+|.+.+..+.|.+|
T Consensus 370 ~tAarl~~G~hlP~LYl------------gmey~~t~n~kLAe~Ff~~A~ai~P~Dpl----v~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 370 FTAARLMPGCHLPSLYL------------GMEYMRTNNLKLAEKFFKQALAIAPSDPL----VLHELGVVAYTYEEYPEA 433 (611)
T ss_pred HHHHHhccCCcchHHHH------------HHHHHHhccHHHHHHHHHHHHhcCCCcch----hhhhhhheeehHhhhHHH
Confidence 99999999988877777 99999999999999999999999999664 589999999999999999
Q ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhcc--cccchh
Q psy16214 290 IADCTLALEKD-------PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKRS--EVKDYY 359 (470)
Q Consensus 290 ~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~~--~~~~~y 359 (470)
..+|+.++..- +.....+.++|.++.+++.+++|+.+|++++.+.|. ......+.-+...++.- ....+.
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 99999999442 223567899999999999999999999999999997 66777777666666532 234455
Q ss_pred hhccCCCCC
Q psy16214 360 KILGVTKNA 368 (470)
Q Consensus 360 ~~lg~~~~~ 368 (470)
+.|.+.+..
T Consensus 514 KaL~l~p~n 522 (611)
T KOG1173|consen 514 KALALKPDN 522 (611)
T ss_pred HHHhcCCcc
Confidence 666665544
No 50
>KOG1156|consensus
Probab=99.88 E-value=4e-19 Score=163.99 Aligned_cols=332 Identities=16% Similarity=0.126 Sum_probs=253.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
..++..+...+..++|...+...+.+++..|++++.+...|..+..+|+-++|......++..++.+...|.-+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 36888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH----------------------HHHHHHhcCCHHHHHHHHH
Q psy16214 85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE----------------------GASKAFEANDYRTAMFYLD 142 (470)
Q Consensus 85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~----------------------~a~~~~~~~~~~~A~~~~~ 142 (470)
..+|++|+++|..|+.++|+|..++..++.+....+.++ .|......|++..|+..++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888776554443 2333444577777777777
Q ss_pred HHHHhC---CCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214 143 RAMDQG---VASK-----TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK 214 (470)
Q Consensus 143 ~~l~~~---p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 214 (470)
...+.. |... ........++...|.+++|++.+..--...-+.....-..+.++...+++++|+..+...+.
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 666554 3222 23444556667777777777766654433334445566778899999999999999999999
Q ss_pred hCCChHHHHHHHHHHHH-HHHHHHHHHHHH---------------------hcCCHHHH---------------------
Q psy16214 215 LAPDHAKAKETYKRAKL-LKAKKEEGNEKF---------------------VAGKNQEA--------------------- 251 (470)
Q Consensus 215 ~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~A--------------------- 251 (470)
.+|++...+..+..+.. .......-...+ .-.++...
T Consensus 248 rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~ 327 (700)
T KOG1156|consen 248 RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR 327 (700)
T ss_pred hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH
Confidence 99999887777655542 111111000000 00011111
Q ss_pred --------HHHHHHHHh-----hccc------------CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214 252 --------FDIYTEALK-----IDAR------------NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306 (470)
Q Consensus 252 --------~~~~~~al~-----~~p~------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (470)
...+++.+. +.+. .|....+.++.++.-+...|+++.|..+++.|+...|+.++.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl 407 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL 407 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence 112222210 0111 122235777788999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 307 LSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+...|+++...|++++|..++..+.+++-.
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 999999999999999999999999999864
No 51
>KOG2003|consensus
Probab=99.88 E-value=1.3e-19 Score=160.39 Aligned_cols=296 Identities=15% Similarity=0.034 Sum_probs=258.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHc--CChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMML--GMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.-..++..++++|+++.|++.+.-.-+.+... ..+-.++...++.+ .++..|..+...++.++.-++.++.+.|.+-
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 34567889999999999999998766655433 44556777777664 4799999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL 162 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 162 (470)
+..|++++|.+.|+.++.-+....++++.++.. +-..|+.++|+.+|-++-.+--++.+++..++.+|
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt------------~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLT------------AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhccc------------HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999887777776555554 45568888999999998888889999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK 242 (470)
Q Consensus 163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (470)
..+.+..+|++++.++..+-|++|.++..+|.+|-+.|+-.+|..++-...+..|.+......+ |..|
T Consensus 569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl------------~ayy 636 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWL------------AAYY 636 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHH------------HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888 9999
Q ss_pred HhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Q psy16214 243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322 (470)
Q Consensus 243 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 322 (470)
....-+++|+.+|+++.-+.|+ .+.-...++.|+.+.|+|.+|.+.|+..-...|.+.+.+.-+-++.-.+|-. +
T Consensus 637 idtqf~ekai~y~ekaaliqp~----~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d 711 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPN----QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-D 711 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCcc----HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-h
Confidence 9999999999999999999998 4455677899999999999999999999999999999999988888877753 3
Q ss_pred HHHHHHHH
Q psy16214 323 CVIDAEKI 330 (470)
Q Consensus 323 A~~~~~~a 330 (470)
|.++-.+.
T Consensus 712 ~key~~kl 719 (840)
T KOG2003|consen 712 AKEYADKL 719 (840)
T ss_pred HHHHHHHH
Confidence 44444433
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.87 E-value=9.1e-19 Score=166.23 Aligned_cols=285 Identities=12% Similarity=0.057 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-HHHHHHHHHHH
Q psy16214 39 AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALET 117 (470)
Q Consensus 39 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~ 117 (470)
......|...+..|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~-------- 156 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE-------- 156 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH--------
Confidence 34456788888999999999999999999999888899999999999999999999999999888875 332
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHH----HHH
Q psy16214 118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF----VRG 193 (470)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~----~la 193 (470)
...+...+..|+++.|+..++.+++..|+++.++..++.++...|++++|.+.+.+..+..+.++.... ...
T Consensus 157 ----~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~ 232 (409)
T TIGR00540 157 ----IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE 232 (409)
T ss_pred ----HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 223555788999999999999999999999999999999999999999999999999987655544332 222
Q ss_pred HHHhccCChHHHHHHHHHHHhhCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccch
Q psy16214 194 LCLYYDDKMDLAVNHFQLLLKLAP----DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ 269 (470)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 269 (470)
.-....+..+++...+..+....| +++.....+ +..+...|++++|++.++++++..|++....
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~------------a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~ 300 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIAL------------AEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS 300 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHH------------HHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence 222344555566678888888777 477777777 9999999999999999999999999875321
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHhcCCChhHHHHHHH
Q psy16214 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL--KALSRRCKCFHALGQYKECVIDAE--KIYKMDNSRENHNFLEE 345 (470)
Q Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~p~~~~~~~l~~ 345 (470)
............++...+++.++++++..|+++ ..+..+|+++...|++++|.++|+ ++++..|+++....+..
T Consensus 301 --~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 301 --LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred --hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 112233344456888999999999999999999 889999999999999999999999 68889998776666654
Q ss_pred HHHH
Q psy16214 346 AKRL 349 (470)
Q Consensus 346 ~~~~ 349 (470)
+...
T Consensus 379 ll~~ 382 (409)
T TIGR00540 379 AFDQ 382 (409)
T ss_pred HHHH
Confidence 4333
No 53
>KOG1125|consensus
Probab=99.87 E-value=9.4e-21 Score=172.88 Aligned_cols=254 Identities=18% Similarity=0.132 Sum_probs=181.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy16214 42 GNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN 121 (470)
Q Consensus 42 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 121 (470)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.++...++-..|+..++++++++|+|.+++..|+..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS------ 362 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS------ 362 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH------
Confidence 45677777788888888888888888888888888888888877777777777777777777777665333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC
Q psy16214 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK 201 (470)
Q Consensus 122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 201 (470)
+...|.-.+|+.++.+-+...|........ . ..++ +... .-......
T Consensus 363 ------ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a--~---~~~~---------------~~~~-------~s~~~~~~ 409 (579)
T KOG1125|consen 363 ------YTNEGLQNQALKMLDKWIRNKPKYVHLVSA--G---ENED---------------FENT-------KSFLDSSH 409 (579)
T ss_pred ------HhhhhhHHHHHHHHHHHHHhCccchhcccc--C---cccc---------------ccCC-------cCCCCHHH
Confidence 333344444555555555444432211100 0 0000 0000 00011111
Q ss_pred hHHHHHHHHHHHhhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHH
Q psy16214 202 MDLAVNHFQLLLKLAP--DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV 279 (470)
Q Consensus 202 ~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~ 279 (470)
+..-.+.|-.+....| .++++...+ |.+|...++|++|+.+|+.||...|+ +..+|..||.+
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~L------------GVLy~ls~efdraiDcf~~AL~v~Pn----d~~lWNRLGAt 473 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGL------------GVLYNLSGEFDRAVDCFEAALQVKPN----DYLLWNRLGAT 473 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhh------------HHHHhcchHHHHHHHHHHHHHhcCCc----hHHHHHHhhHH
Confidence 2234455666666677 677888888 99999999999999999999999999 56779999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----------hhHHHHHHHHHH
Q psy16214 280 LFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-----------RENHNFLEEAKR 348 (470)
Q Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----------~~~~~~l~~~~~ 348 (470)
+..-.+.++|+..|++|+++.|.++.+++++|.+++.+|.|++|+.+|-.|+.+.+. ..++..|+.+..
T Consensus 474 LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als 553 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALS 553 (579)
T ss_pred hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999764 235566654444
Q ss_pred Hh
Q psy16214 349 LL 350 (470)
Q Consensus 349 ~~ 350 (470)
.+
T Consensus 554 ~~ 555 (579)
T KOG1125|consen 554 AM 555 (579)
T ss_pred Hc
Confidence 44
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.87 E-value=1.6e-19 Score=159.18 Aligned_cols=203 Identities=19% Similarity=0.101 Sum_probs=183.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.+..+..+|..++..|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELD--PDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAE 160 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 160 (470)
...|++++|+..+.+++... +.....+.. .+..+...|++++|+..+.+++...|.+...+..++.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 177 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLEN------------AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence 99999999999999999753 233334333 3445788899999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC
Q psy16214 161 CLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP 217 (470)
Q Consensus 161 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 217 (470)
++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 178 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999999999999999888899999999999999999999998887766544
No 55
>KOG0550|consensus
Probab=99.87 E-value=1.6e-20 Score=164.23 Aligned_cols=327 Identities=19% Similarity=0.231 Sum_probs=252.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALET 117 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 117 (470)
+.-...+|..++...+|.+|+..+..|+++.|+++..|...+.+++..|++++|....++.+++.|..+......+++..
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 45567788899999999999999999999999999999999999999999999999999999999999888877777776
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC---CCChHHHHHHHH
Q psy16214 118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD---KQNPDAVFVRGL 194 (470)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~ 194 (470)
..+....|...++..+.. ....|+..+++++..+ |....+....+.
T Consensus 129 a~~~~i~A~~~~~~~~~~-------------------------------~~anal~~~~~~~~s~s~~pac~~a~~lka~ 177 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAY-------------------------------KAANALPTLEKLAPSHSREPACFKAKLLKAE 177 (486)
T ss_pred hhHHHHHHHHHhhhhhhh-------------------------------HHhhhhhhhhcccccccCCchhhHHHHhhhh
Confidence 666665555554421111 1222333344433322 333456677889
Q ss_pred HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc------
Q psy16214 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI------ 268 (470)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------ 268 (470)
|+...+++++|+..--..+++++.+..+.... |.+++...+.+.|+.+|++++.++|++...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr------------g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVR------------GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhc------------ccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 99999999999999999999999999998887 999999999999999999999999986432
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHH
Q psy16214 269 --NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY----LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNF 342 (470)
Q Consensus 269 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 342 (470)
....+-..|.-.++.|++..|.+.|..+|.++|++ +..|.+++.+..++|+..+|+...+.+++++|+ -+...
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikal 324 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKAL 324 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHH
Confidence 13566677888999999999999999999999987 677999999999999999999999999999985 34444
Q ss_pred HHHHHHHhhc----ccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCC-------ccHHhhHHHHHHHHHHHHHH
Q psy16214 343 LEEAKRLLKR----SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTN-------ATQAQKLEQEKLFKEVGEAY 411 (470)
Q Consensus 343 l~~~~~~~~~----~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~-------~~~~~~~~~~~~~~~i~~ay 411 (470)
+.++...+-- ....++-+.+....+ -+|++..+++.+.+...|-++ ...+...++.+.++.+.-++
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s---~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~ 401 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD---CEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVH 401 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHh
Confidence 5555444322 234566666666555 467777777766665554443 11223344566666666666
No 56
>KOG1129|consensus
Probab=99.87 E-value=1.8e-20 Score=159.16 Aligned_cols=272 Identities=18% Similarity=0.122 Sum_probs=237.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhcC---Cc-------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 13 TQYKLKQYSKALKCYSEAISVC---PN-------VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 13 ~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.++...+...|-......++.+ |. +...-..+|.||+++|-+.+|.+.++.+++..| .++.+..++++|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence 4556667777766555555432 21 234446789999999999999999999999877 688999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL 162 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 162 (470)
.+..++..|+..+...++..|.+.......++++.. .+++++|+++|+.+++.+|.+.++...+|.-|
T Consensus 267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea------------m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y 334 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA------------MEQQEDALQLYKLVLKLHPINVEAIACIAVGY 334 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH------------HHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence 999999999999999999999999888777776444 46778888999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHHHHHH
Q psy16214 163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP---DHAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
+..++.+-|+.+|+++++..-.+++.+.++|.|.+..++++-++..|++++.... .-.++|.++ |
T Consensus 335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl------------g 402 (478)
T KOG1129|consen 335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL------------G 402 (478)
T ss_pred ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc------------c
Confidence 9999999999999999999999999999999999999999999999999998654 235677777 9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC 313 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (470)
.+....|++..|..+|+-++..+++ ++.++.++|.+-.+.|+.++|..+++.+-...|...+..++++.+
T Consensus 403 ~vaV~iGD~nlA~rcfrlaL~~d~~----h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 403 FVAVTIGDFNLAKRCFRLALTSDAQ----HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred eeEEeccchHHHHHHHHHHhccCcc----hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 9999999999999999999999999 678899999999999999999999999999999988877776543
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=1.3e-19 Score=163.78 Aligned_cols=222 Identities=14% Similarity=0.071 Sum_probs=177.8
Q ss_pred HcCChHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDN----PAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA 159 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 159 (470)
..+..+.++..+.+++...|-+ +..+ +..+..+...|++++|+..|+++++.+|+++.++..+|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~------------~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 105 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLH------------YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLG 105 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHH------------HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3457788999999999754433 3334 34444577889999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
.++...|++++|+..++++++++|++..++.++|.++...|++++|+..++++++.+|+++... .. .
T Consensus 106 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~------------~ 172 (296)
T PRK11189 106 IYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LW------------L 172 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HH------------H
Confidence 9999999999999999999999999999999999999999999999999999999999987421 11 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHH--HHHH----HHHHHhCCCCHHHHHHHHHH
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA--IADC----TLALEKDPNYLKALSRRCKC 313 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~----~~al~~~p~~~~~~~~la~~ 313 (470)
......+++++|+..+.+++...+.+. |. .+.+...+|++..+ +..+ +..+++.|..+.+|+.+|.+
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~~~~~~~------~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~ 245 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYEKLDKEQ------WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKY 245 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHhhCCccc------cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 234456889999999988775433211 21 35555666765443 3222 23346677788999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCh
Q psy16214 314 FHALGQYKECVIDAEKIYKMDNSR 337 (470)
Q Consensus 314 ~~~~g~~~~A~~~~~~a~~~~p~~ 337 (470)
+..+|++++|+.+|+++++++|.+
T Consensus 246 ~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 246 YLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCch
Confidence 999999999999999999999853
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=4.5e-18 Score=144.56 Aligned_cols=271 Identities=13% Similarity=0.046 Sum_probs=235.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy16214 42 GNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN 121 (470)
Q Consensus 42 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 121 (470)
+..|.-++-..+.++|+..|-..++.+|...+++..||.++.+.|..+.|+..-+.+++ .|+-+.....++ .
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lA-------l 110 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLA-------L 110 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHH-------H
Confidence 45677777888999999999999999999999999999999999999999998777665 555544332222 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHH
Q psy16214 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN-----PDAVFVRGLCL 196 (470)
Q Consensus 122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~ 196 (470)
.+.+..++..|-++.|...|..+.+...-...++..+..+|....+|++|++..++..++.+.. +..++.++..+
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 5667778888999999999998888777778889999999999999999999999999998876 45688899999
Q ss_pred hccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHH
Q psy16214 197 YYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNR 276 (470)
Q Consensus 197 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~l 276 (470)
....+.+.|+..+.++++.+|....+...+ |.+....|+|+.|++.++.+++.+|.- .+.+...+
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~l------------G~v~~~~g~y~~AV~~~e~v~eQn~~y---l~evl~~L 255 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIIL------------GRVELAKGDYQKAVEALERVLEQNPEY---LSEVLEML 255 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhh------------hHHHHhccchHHHHHHHHHHHHhChHH---HHHHHHHH
Confidence 999999999999999999999999998888 999999999999999999999988874 57788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 277 ATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 277 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
..||..+|+.++.+..+.++.+..+. +.+...++..-....-.+.|..++.+-+...|+
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 99999999999999999999998877 556667777777888889999999999999997
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.86 E-value=3.5e-18 Score=161.31 Aligned_cols=269 Identities=14% Similarity=0.003 Sum_probs=220.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAY-YGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL 85 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 85 (470)
+...+......|+++.|..+|.++.+.+|++..+ ....+..+...|++++|+..++++++.+|+++.++..++.+|...
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3444666699999999999999999999987543 345599999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 86 GDAPTARSNLKALQELDPDNPAIAQESK-ALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH 164 (470)
Q Consensus 86 g~~~~A~~~~~~~l~~~p~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 164 (470)
|++++|++.+.++.+..+.++.....+. ..+.. .........+-+.....++......|+++.+...++..+..
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~-----l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG-----LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE 275 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-----HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999988776655433211 11111 01111222344455555555556678899999999999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16214 165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV 244 (470)
Q Consensus 165 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (470)
.|+.++|...++++++. |.++......+.+ ..++++++++.+++.++.+|+++.....+ |.++..
T Consensus 276 ~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~l------------grl~~~ 340 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTL------------GQLLMK 340 (398)
T ss_pred CCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHH
Confidence 99999999999999994 5466655555554 45999999999999999999999999888 999999
Q ss_pred cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214 245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300 (470)
Q Consensus 245 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (470)
.++|++|.+.|+++++..|++ ..+..++.++..+|+.++|..+|++++.+.
T Consensus 341 ~~~~~~A~~~le~al~~~P~~-----~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 341 HGEWQEASLAFRAALKQRPDA-----YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999984 346789999999999999999999998764
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.85 E-value=9.4e-19 Score=154.17 Aligned_cols=202 Identities=15% Similarity=0.118 Sum_probs=183.3
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214 37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116 (470)
Q Consensus 37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 116 (470)
.+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..++.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~- 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF- 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-
Confidence 4788999999999999999999999999999999999999999999999999999999999999999998877666555
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy16214 117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQG--VASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL 194 (470)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 194 (470)
+...|++++|+..+.+++... +.....+..+|.++...|++++|...+.+++...|.++.++..+|.
T Consensus 109 -----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 177 (234)
T TIGR02521 109 -----------LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177 (234)
T ss_pred -----------HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence 567789999999999998753 5566788889999999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262 (470)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 262 (470)
++...|++++|+..+++++...|.++..+... +.++...|+.++|..+.+.+....
T Consensus 178 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERYQQTYNQTAESLWLG------------IRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999988877776665 888889999999999888776554
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=9.6e-19 Score=142.09 Aligned_cols=208 Identities=16% Similarity=0.052 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+.....+|..|+..|++..|...++++|+.+|++..+|..+|.+|...|+.+.|-+.|++|++++|++..++.+.|.-++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQEL--DPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC 161 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 161 (470)
.+|++++|...|++++.. .|.....+..++.+ .++.|+.+.|..+|+++++.+|+.+.....++..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C------------al~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLC------------ALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH------------HhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 999999999999999872 23344555555544 7888999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK 223 (470)
Q Consensus 162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 223 (470)
++..|+|-.|..+++......+-..+.+.....+--..|+.+.+-.+=.++-+..|.+....
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999988888888888888888999999999888888888888877643
No 62
>KOG0713|consensus
Probab=99.85 E-value=2.3e-21 Score=166.24 Aligned_cols=71 Identities=48% Similarity=0.784 Sum_probs=65.3
Q ss_pred ccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 353 ~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
...++||++|||+++|+..|||+||||+|+++||||++++ +.|.++|++|+.||||||||+||+.||..++
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd-----p~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD-----PNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 3568999999999999999999999999999999999984 4678889999999999999999999999554
No 63
>KOG4162|consensus
Probab=99.84 E-value=7.6e-19 Score=165.31 Aligned_cols=292 Identities=20% Similarity=0.096 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214 20 YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP-RFSKGLIRQIKCNIALGDAPTARSNLKAL 98 (470)
Q Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 98 (470)
..++++.++++++.+|+|+.+.+.++.-|...++...|+...++++++++ +++.+|..+|.++...+++.+|+.....+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999955 56899999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHH
Q psy16214 99 QELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK---------TYKLMKAECLAHLNRLQ 169 (470)
Q Consensus 99 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---------~~~~~~a~~~~~~~~~~ 169 (470)
+.-.|+|.........+. ..-++.++|+..+...+....... ......+.......+..
T Consensus 540 l~E~~~N~~l~~~~~~i~------------~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIE------------LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHhhhhhhhchhhhhhh------------hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 999998776554444432 224566666666655554433221 12222333333334444
Q ss_pred HHHHHHHHHhhc---------------------CCCC-----hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214 170 EAQEIANSILAT---------------------DKQN-----PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK 223 (470)
Q Consensus 170 ~A~~~~~~~l~~---------------------~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 223 (470)
+|+..+..+... .|.+ ...|...+..+...++.++|..++.++-.++|.....+
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~ 687 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVY 687 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHH
Confidence 555544443321 1111 24677889999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCC
Q psy16214 224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIA--DCTLALEKDP 301 (470)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p 301 (470)
... |..+...|++.+|.+.|..++.++|+++. ....+|.++.+.|+..-|.. .+..+++++|
T Consensus 688 ~~~------------G~~~~~~~~~~EA~~af~~Al~ldP~hv~----s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 688 YLR------------GLLLEVKGQLEEAKEAFLVALALDPDHVP----SMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHh------------hHHHHHHHhhHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 887 99999999999999999999999999654 58889999999998888877 9999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhH
Q psy16214 302 NYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSREN 339 (470)
Q Consensus 302 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 339 (470)
.++++|+.+|.++..+|+.++|.++|..+++++++..+
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999999999987443
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=3.2e-18 Score=139.10 Aligned_cols=200 Identities=18% Similarity=0.165 Sum_probs=175.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC
Q psy16214 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD 200 (470)
Q Consensus 121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 200 (470)
.+..+..++..|++..|...++++++.+|++..++..+|.+|...|+.+.|-+.|+++++++|++.+++++.|..++.+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 46777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHH
Q psy16214 201 KMDLAVNHFQLLLK--LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRAT 278 (470)
Q Consensus 201 ~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~ 278 (470)
++++|...|++++. ..|.....+.++ |.+.++.|+++.|.++|++++..+|+.+ .....++.
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~------------G~Cal~~gq~~~A~~~l~raL~~dp~~~----~~~l~~a~ 181 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENL------------GLCALKAGQFDQAEEYLKRALELDPQFP----PALLELAR 181 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhh------------HHHHhhcCCchhHHHHHHHHHHhCcCCC----hHHHHHHH
Confidence 99999999999987 335555666666 9999999999999999999999999854 45788899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 279 VLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 279 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.+++.|+|..|..+++......+-....+....++-..+|+-+.|.++=.+.....|.
T Consensus 182 ~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 182 LHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999988888888888888888888999999888888888888887
No 65
>PLN02789 farnesyltranstransferase
Probab=99.84 E-value=4.3e-18 Score=153.26 Aligned_cols=219 Identities=15% Similarity=0.056 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG-DAPTARSNLKALQELDPDNPAIAQESKALE 116 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 116 (470)
..++..+-.++...+++++|+..+.++|+++|.+..+|..++.++..+| ++++++..+.++++.+|++..+|...+.+.
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 3444444444556678888888888999999998888888888888888 578888888888888888888887777664
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy16214 117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCL 196 (470)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 196 (470)
...+. ..+++++.+++++++.+|.+..+|..++.++...|+++++++.+.++|+.+|.+..+|..++.++
T Consensus 117 ~~l~~----------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 117 EKLGP----------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HHcCc----------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence 32211 12356788888999999999999999999999999999999999999999999999999999887
Q ss_pred hcc---CCh----HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcccC
Q psy16214 197 YYD---DKM----DLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV----AGKNQEAFDIYTEALKIDARN 265 (470)
Q Consensus 197 ~~~---g~~----~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~ 265 (470)
... |.+ ++++.+..+++..+|++..+|..+ +.++.. .++..+|++.+.+++...|.
T Consensus 187 ~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl------------~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~- 253 (320)
T PLN02789 187 TRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYL------------RGLFKDDKEALVSDPEVSSVCLEVLSKDSN- 253 (320)
T ss_pred HhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHH------------HHHHhcCCcccccchhHHHHHHHhhcccCC-
Confidence 665 222 456777777777777777777776 555544 23445566666666665555
Q ss_pred ccchHHHHHHHHHHHHH
Q psy16214 266 ININSKLLHNRATVLFK 282 (470)
Q Consensus 266 ~~~~~~~~~~la~~~~~ 282 (470)
.+.++..++.++..
T Consensus 254 ---s~~al~~l~d~~~~ 267 (320)
T PLN02789 254 ---HVFALSDLLDLLCE 267 (320)
T ss_pred ---cHHHHHHHHHHHHh
Confidence 33445555666553
No 66
>PLN02789 farnesyltranstransferase
Probab=99.84 E-value=6.5e-18 Score=152.08 Aligned_cols=202 Identities=11% Similarity=0.024 Sum_probs=181.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh--H
Q psy16214 13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA--P 89 (470)
Q Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~ 89 (470)
++...+.+++|+..+.++|.++|.+..+|..++.++..++ ++++++..++++++.+|++..+|..++.++..+|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 4567789999999999999999999999999999999999 689999999999999999999999999999999874 7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---C
Q psy16214 90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL---N 166 (470)
Q Consensus 90 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~---~ 166 (470)
+++.++.++++.+|+|..+|...+.+.. ..+++++++..++++++.+|.+..+|..++.++... +
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~------------~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLR------------TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHH------------HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc
Confidence 8899999999999999999988887744 346688999999999999999999999999998776 3
Q ss_pred CH----HHHHHHHHHHhhcCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 167 RL----QEAQEIANSILATDKQNPDAVFVRGLCLYY----DDKMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 167 ~~----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
.+ ++++.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.++.+...+
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l 261 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDL 261 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHH
Confidence 33 578889999999999999999999999987 4556789999999999999998888877
No 67
>KOG0712|consensus
Probab=99.83 E-value=5.3e-21 Score=166.67 Aligned_cols=87 Identities=45% Similarity=0.740 Sum_probs=72.4
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCc-CCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIM-EDSG 434 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~-~~~~ 434 (470)
..+|.+|+|..+|+..|||||||+++++|||||+++ +.++|++|++||||||||+||+.||+.++.. .+||
T Consensus 4 ~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--------~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~ 75 (337)
T KOG0712|consen 4 TKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--------AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG 75 (337)
T ss_pred cccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC
Confidence 578999999999999999999999999999999987 6789999999999999999999999977643 3333
Q ss_pred CCCCCccchhHHHHHHHhcCCCC
Q psy16214 435 MGGHAGANLFEQHMFQTYFDPGC 457 (470)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~ 457 (470)
+||.++ . |++||+.|+
T Consensus 76 ~~~g~~------~-f~~~F~~g~ 91 (337)
T KOG0712|consen 76 GGGGFG------G-FSQFFGFGG 91 (337)
T ss_pred CCCCCc------c-HHHhccCCC
Confidence 333322 2 888887544
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=8.4e-17 Score=136.90 Aligned_cols=293 Identities=16% Similarity=0.097 Sum_probs=238.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----HHHHHHHHHHH
Q psy16214 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-----SKGLIRQIKCN 82 (470)
Q Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 82 (470)
+-.|.-++-..+.++|+..|...++.+|...++...+|..+.+.|..+.|+..-+..++ .|+. ..+...||.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 45678888899999999999999999999999999999999999999999998776554 5654 45788999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK-----TYKLM 157 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~ 157 (470)
+..|-++.|...|..+.....--..+...+..+| -...+|++|++..++..+..+... ..+..
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IY------------Q~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIY------------QATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHH------------HHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 9999999999999998876555566666666664 344677888888888888877653 56778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHH
Q psy16214 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-KAKETYKRAKLLKAKK 236 (470)
Q Consensus 158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~ 236 (470)
+|..+....+.+.|...+.++++.+|++..+-..+|.+....|+++.|++.++.+++.+|+.. .+...+
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L---------- 255 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML---------- 255 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH----------
Confidence 888889999999999999999999999999999999999999999999999999999999864 344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA 316 (470)
Q Consensus 237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 316 (470)
..+|.+.|+.++.+..+.++.+..+.. .+...++..-....-.+.|..++.+-+...|+.- ..+.+-.....
T Consensus 256 --~~~Y~~lg~~~~~~~fL~~~~~~~~g~-----~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~ 327 (389)
T COG2956 256 --YECYAQLGKPAEGLNFLRRAMETNTGA-----DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLA 327 (389)
T ss_pred --HHHHHHhCCHHHHHHHHHHHHHccCCc-----cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhc
Confidence 889999999999999999999988763 3456667777777778899999999999999843 44444333332
Q ss_pred ---hCCHHHHHHHHHHHH
Q psy16214 317 ---LGQYKECVIDAEKIY 331 (470)
Q Consensus 317 ---~g~~~~A~~~~~~a~ 331 (470)
.|...+.+..+++.+
T Consensus 328 daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 328 DAEEGRAKESLDLLRDMV 345 (389)
T ss_pred cccccchhhhHHHHHHHH
Confidence 233444444444443
No 69
>KOG0495|consensus
Probab=99.83 E-value=4.6e-16 Score=143.98 Aligned_cols=307 Identities=14% Similarity=0.038 Sum_probs=275.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCP---NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI 79 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 79 (470)
+-+.|+..|..+-..|..-.+..+...+|.+-- +.-..|..-+..+...+-++-|...|..+++..|.....|...+
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~ 557 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAA 557 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 345677777777777777777777777766532 34667888899999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 80 KCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA 159 (470)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 159 (470)
..-..-|..++-...+++++...|.....|...+.. ....|+...|...+..+++.+|++.++|+...
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake------------~w~agdv~~ar~il~~af~~~pnseeiwlaav 625 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE------------KWKAGDVPAARVILDQAFEANPNSEEIWLAAV 625 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH------------HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999999999999999999999999888887544443 56669999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
.+.....+++.|..++.++-...| ...+|+.-+.+...+++.++|+..++++++..|+....+..+ |
T Consensus 626 Kle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lml------------G 692 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLML------------G 692 (913)
T ss_pred HHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHH------------h
Confidence 999999999999999999988665 478899999999999999999999999999999999999988 9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ 319 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 319 (470)
.++.+.++.+.|.+.|...++..|..+. +|..++.+-.+.|....|...++++.-.+|.+...|+...++-++.|+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ip----LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKCPNSIP----LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN 768 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCch----HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC
Confidence 9999999999999999999999999654 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChh
Q psy16214 320 YKECVIDAEKIYKMDNSRE 338 (470)
Q Consensus 320 ~~~A~~~~~~a~~~~p~~~ 338 (470)
.+.|.....+|++-.|+..
T Consensus 769 ~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 769 KEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHHHHHHHHHHHHhCCccc
Confidence 9999999999999999843
No 70
>KOG1156|consensus
Probab=99.81 E-value=1.9e-16 Score=146.55 Aligned_cols=329 Identities=17% Similarity=0.061 Sum_probs=256.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
-++.+-.+|..+...|+-++|..+...++..++.+...|.-+|.++....+|++|+++|+.|+.++|++...+..++.+.
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH------------------------------hcC
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF------------------------------EAN 132 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~------------------------------~~~ 132 (470)
.++++++.....-.+.+++.|.....|...+..+...+.+..|...+ +.|
T Consensus 120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999888888888777776666655432 236
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH-HHHHH
Q psy16214 133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV-NHFQL 211 (470)
Q Consensus 133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~ 211 (470)
.+++|++.+...-...-+........+.++..++++++|+..+...+..+|++...+..+-.++..-.+.-+++ ..|..
T Consensus 200 ~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 200 SLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred cHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 66666666655544444555667778999999999999999999999999999887777666664222222233 33333
Q ss_pred HHhhCCChH------------------------------------HHHHH---------HHHH-----------------
Q psy16214 212 LLKLAPDHA------------------------------------KAKET---------YKRA----------------- 229 (470)
Q Consensus 212 ~l~~~p~~~------------------------------------~~~~~---------~~~~----------------- 229 (470)
.-+..|... ..... +.++
T Consensus 280 ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 280 LSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred HhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 222111100 00000 0000
Q ss_pred ---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214 230 ---------KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300 (470)
Q Consensus 230 ---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (470)
..+......+..+...|+++.|..+++.|+...|+ ..+.+...|.++...|++++|..++..+-+++
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT----liEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT----LIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch----HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 11222233477778889999999999999999999 67779999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214 301 PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 301 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 335 (470)
-.+.-+-..-|.-..+.++.++|.+...+..+..-
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 77766666789999999999999999888776653
No 71
>KOG4162|consensus
Probab=99.80 E-value=3.1e-16 Score=147.97 Aligned_cols=341 Identities=16% Similarity=0.094 Sum_probs=267.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHH-
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLD--PRFSKGLIRQIK- 80 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~- 80 (470)
+..|-.+...+...|+|+.+.+.|++++...-.....|+.++.++...|....|+...+..+... |+++..+...+.
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmaskl 402 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKL 402 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHH
Confidence 45566777888889999999999999998887888999999999999999999999999999988 777776666554
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy16214 81 CNIALGDAPTARSNLKALQELDPD-----NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYK 155 (470)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 155 (470)
|....+..++++.+..+++..... .+..+..+|..|...... .-....+.....++++.++++++.+|+++.+.
T Consensus 403 c~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~-a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ-ANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc-CCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 556789999999999999884421 122333344333222100 00011222345688999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHH------------
Q psy16214 156 LMKAECLAHLNRLQEAQEIANSILATD-KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA------------ 222 (470)
Q Consensus 156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------------ 222 (470)
+.++.-|...++.+.|.....++++.+ ..++.+|..++.++...+++.+|+.....++...|++...
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~ 561 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFN 561 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcc
Confidence 999999999999999999999999994 5678899999999999999999999999999887773211
Q ss_pred ---------------HHH-------HHHH---------------------------------------------------
Q psy16214 223 ---------------KET-------YKRA--------------------------------------------------- 229 (470)
Q Consensus 223 ---------------~~~-------~~~~--------------------------------------------------- 229 (470)
|.. +.+.
T Consensus 562 ~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~ 641 (799)
T KOG4162|consen 562 DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPG 641 (799)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCC
Confidence 110 0000
Q ss_pred ------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16214 230 ------KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303 (470)
Q Consensus 230 ------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (470)
.....+.-.+..+...++.++|..++.++-.++|. .+..|+..|.++...|+..+|.+.|..++.++|++
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l----~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL----SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh----hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 00001112366667778888888888888888887 56789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHH--HHHHHHhcCCC-hhHHHHHHHHHHH
Q psy16214 304 LKALSRRCKCFHALGQYKECVI--DAEKIYKMDNS-RENHNFLEEAKRL 349 (470)
Q Consensus 304 ~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~p~-~~~~~~l~~~~~~ 349 (470)
+.+...+|.++...|+..-|.. .+..+++++|. ++++..|......
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988888 99999999998 8888888766433
No 72
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.80 E-value=4.9e-15 Score=153.12 Aligned_cols=297 Identities=11% Similarity=0.034 Sum_probs=196.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP-RFSKGLIRQIKCNI 83 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 83 (470)
.|..+-..+...|++++|..+|..+.+... .+...|..+..+|.+.|+.++|...|++..+... .+...|..+...|.
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 444555566677777777777777766532 2456677777777777777777777777776542 25667777777777
Q ss_pred HcCChHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQEL--DPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ----GVASKTYKLM 157 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~ 157 (470)
+.|++++|+..|...... .|+ ...+..+... +.+.|++++|...+..+... .|+ ...+..
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a------------~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyna 584 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISA------------CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGA 584 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH------------HHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence 777777777777776543 333 3333333333 44557778888888777653 333 456666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHH
Q psy16214 158 KAECLAHLNRLQEAQEIANSILATD-KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL--APDHAKAKETYKRAKLLKA 234 (470)
Q Consensus 158 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~ 234 (470)
+...|.+.|++++|.++|+.+.+.+ +.+...|..+...|.+.|++++|+..|.+.... .|+. ..+..+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-~TynsL-------- 655 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-VFFSAL-------- 655 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHH--------
Confidence 7777888888888888888877765 445677777888888888888888888877764 4543 233333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q psy16214 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK--DPNYLKALSRRCK 312 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~ 312 (470)
...+.+.|++++|.+++.++.+..... ...+|..+..+|.+.|++++|+..|++.... .| +..+|..+..
T Consensus 656 ----I~a~~k~G~~eeA~~l~~eM~k~G~~p---d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~ 727 (1060)
T PLN03218 656 ----VDVAGHAGDLDKAFEILQDARKQGIKL---GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALIT 727 (1060)
T ss_pred ----HHHHHhCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Confidence 566667777777777777766543211 2455677777777777777777777766543 33 3566777777
Q ss_pred HHHHhCCHHHHHHHHHHHHhc
Q psy16214 313 CFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 313 ~~~~~g~~~~A~~~~~~a~~~ 333 (470)
.|.+.|++++|.+.|+++...
T Consensus 728 gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHc
Confidence 777777777777777766543
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.79 E-value=1e-15 Score=143.82 Aligned_cols=311 Identities=14% Similarity=-0.050 Sum_probs=225.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI 79 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 79 (470)
-+..+..+|..+...|+++.|...+.++....|.+ .......+.++...|++++|+..++++++.+|++..++.. +
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-H 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-h
Confidence 35678899999999999999999999998887754 5567788999999999999999999999999999887775 5
Q ss_pred HHHHHcCChH----HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy16214 80 KCNIALGDAP----TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYK 155 (470)
Q Consensus 80 ~~~~~~g~~~----~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 155 (470)
..+..+|++. .+...+.......|........+ +..+...|++++|+..+++++...|++..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~ 151 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML------------AFGLEEAGQYDRAEEAARRALELNPDDAWAV 151 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH
Confidence 5555555444 44444443223444444443333 3347788999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh----HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q psy16214 156 LMKAECLAHLNRLQEAQEIANSILATDKQNP----DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKL 231 (470)
Q Consensus 156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 231 (470)
..+|.++...|++++|+..+.+++...|.++ ..+..+|.++...|++++|+..+++++...|...........+..
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASL 231 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHH
Confidence 9999999999999999999999999887543 346689999999999999999999998766632222111000000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH--H-HHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Q psy16214 232 LKAKKEEGNEKFVAGKNQEAFDI--Y-TEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN------ 302 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~A~~~--~-~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 302 (470)
...+...|....+... . .......|. ..........+.++...|+.++|...++........
T Consensus 232 -------l~~~~~~g~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 302 (355)
T cd05804 232 -------LWRLELAGHVDVGDRWEDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQ 302 (355)
T ss_pred -------HHHHHhcCCCChHHHHHHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh
Confidence 1122222322211111 1 111111122 112233346888999999999999999887664322
Q ss_pred ---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214 303 ---YLKALSRRCKCFHALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 303 ---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 335 (470)
...+....+.++...|++++|+..+..++.+..
T Consensus 303 ~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 303 PARDVGLPLAEALYAFAEGNYATALELLGPVRDDLA 338 (355)
T ss_pred hHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999998753
No 74
>KOG1840|consensus
Probab=99.79 E-value=6.2e-17 Score=152.01 Aligned_cols=252 Identities=17% Similarity=0.081 Sum_probs=195.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy16214 68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA-IAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMD 146 (470)
Q Consensus 68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 146 (470)
.|....+...++..|...|++++|+..++.++++-.+... -...++.. .-..|..+...+++.+|+..|++++.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~-----l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASM-----LNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHH-----HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5666778888999999999999999999999987111000 00011111 11345667888999999999999987
Q ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC--------CChHHHHHHHHHHhccCChHHHHHHHH
Q psy16214 147 Q--------GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK--------QNPDAVFVRGLCLYYDDKMDLAVNHFQ 210 (470)
Q Consensus 147 ~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~ 210 (470)
+ +|....++.++|.+|...|++++|..++++++.+.. .-...+..++.++..++++++|+.+++
T Consensus 270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 6 455567899999999999999999999999987632 234568889999999999999999999
Q ss_pred HHHhhCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc----CccchHHHHHHHHHHHH
Q psy16214 211 LLLKLAP-----DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR----NININSKLLHNRATVLF 281 (470)
Q Consensus 211 ~~l~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~la~~~~ 281 (470)
+++++.- +++..-. ...+.|.+++.+|++++|.+.+++++.+... ........+.++|..+.
T Consensus 350 ~al~i~~~~~g~~~~~~a~---------~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAK---------IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred HHHHHHHhhccccchHHHH---------HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 9988542 2212111 1233499999999999999999999977522 12224677889999999
Q ss_pred HcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 282 KMGKYNEAIADCTLALEK-------DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 282 ~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
+++++.+|...|.+++.+ .|+....+.+|+.+|..+|++++|+++..+++..
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999876 4566788999999999999999999999999854
No 75
>KOG1840|consensus
Probab=99.78 E-value=7.3e-17 Score=151.55 Aligned_cols=244 Identities=16% Similarity=0.063 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------C
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISV--------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--------D 68 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~ 68 (470)
.....+|..|..+|+|+.|+..++.+++. .|.-......+|.+|..++++.+|+..|++|+.+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35566999999999999999999999988 6666666677999999999999999999999986 4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q psy16214 69 PRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG 148 (470)
Q Consensus 69 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 148 (470)
|..+.++.+||.+|...|++++|..++++++++.... .....
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--------------------------------------~~~~~ 321 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--------------------------------------LGASH 321 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--------------------------------------hccCh
Confidence 4556789999999999999999999999988754220 00112
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--------CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC---
Q psy16214 149 VASKTYKLMKAECLAHLNRLQEAQEIANSILATD--------KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP--- 217 (470)
Q Consensus 149 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--- 217 (470)
|.-...+..++.++...+++++|+.++.+++++. |.-+..+.++|.+|..+|++++|.+.+++++....
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 3334456677888888888888888888877653 23356889999999999999999999999988542
Q ss_pred -----ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cccCccchHHHHHHHHHHHHHcCCHHH
Q psy16214 218 -----DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI----DARNININSKLLHNRATVLFKMGKYNE 288 (470)
Q Consensus 218 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~la~~~~~~g~~~~ 288 (470)
........+ |..+.+.+++.+|...|.+++.+ .|+++. ....+.+||.+|..+|++++
T Consensus 402 ~~~~~~~~~~l~~l------------a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~-~~~~~~nL~~~Y~~~g~~e~ 468 (508)
T KOG1840|consen 402 GKKDYGVGKPLNQL------------AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD-VTYTYLNLAALYRAQGNYEA 468 (508)
T ss_pred cCcChhhhHHHHHH------------HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHcccHHH
Confidence 112223333 88999999999999999998865 344444 36789999999999999999
Q ss_pred HHHHHHHHHHh
Q psy16214 289 AIADCTLALEK 299 (470)
Q Consensus 289 A~~~~~~al~~ 299 (470)
|+++.+.++..
T Consensus 469 a~~~~~~~~~~ 479 (508)
T KOG1840|consen 469 AEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHH
Confidence 99999998854
No 76
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.78 E-value=1.4e-14 Score=149.78 Aligned_cols=301 Identities=11% Similarity=-0.026 Sum_probs=249.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--DPRFSKGLIRQI 79 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la 79 (470)
+...+..+-..+.+.|++++|..+|+++.+... .+...|..+...|.+.|++++|+..|....+. .| +...|..+.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI 549 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALI 549 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence 455677888899999999999999999987643 26788999999999999999999999998765 44 477899999
Q ss_pred HHHHHcCChHHHHHHHHHHHh----cCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHH
Q psy16214 80 KCNIALGDAPTARSNLKALQE----LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG-VASKTY 154 (470)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~ 154 (470)
..|.+.|++++|.+.+..... +.|+ ...+..+... +.+.|++++|...++.+.+.. +.+...
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~a------------y~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKA------------CANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHH------------HHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 999999999999999999875 3444 3333333333 567899999999999999885 456778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC-CChHHHHHHHHHHHH
Q psy16214 155 KLMKAECLAHLNRLQEAQEIANSILAT--DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA-PDHAKAKETYKRAKL 231 (470)
Q Consensus 155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~ 231 (470)
+..+...|.+.|++++|+.+|.++... .| +...+..+...+...|++++|...+..+.+.. +.+...+..+
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL----- 690 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL----- 690 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----
Confidence 888999999999999999999999876 34 46688899999999999999999999998754 2234455555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Q psy16214 232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKI--DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK--DPNYLKAL 307 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 307 (470)
...|.+.|++++|+++|++.... .|+ ...|..+...|.+.|++++|++.+++.... .|+ ..+|
T Consensus 691 -------I~ay~k~G~~eeA~~lf~eM~~~g~~Pd-----vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty 757 (1060)
T PLN03218 691 -------MGACSNAKNWKKALELYEDIKSIKLRPT-----VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITY 757 (1060)
T ss_pred -------HHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHH
Confidence 88999999999999999988654 343 567999999999999999999999998765 344 6678
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 308 SRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 308 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
..+..++.+.|++++|...+..+.+....
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 88889999999999999999999886543
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.77 E-value=1.1e-16 Score=141.00 Aligned_cols=188 Identities=17% Similarity=0.129 Sum_probs=156.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH---HH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA---AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSK---GL 75 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~ 75 (470)
..++.++.+|..++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4678899999999999999999999999999999875 68899999999999999999999999999998765 79
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214 76 IRQIKCNIAL--------GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ 147 (470)
Q Consensus 76 ~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 147 (470)
+.+|.++... |++++|++.+++++..+|++...+..+..+.......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~------------------------- 165 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL------------------------- 165 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH-------------------------
Confidence 9999999886 8899999999999999999987654443332211100
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCC
Q psy16214 148 GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218 (470)
Q Consensus 148 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 218 (470)
......+|.++...|++.+|+..+++++...|++ +.+++.+|.++...|++++|+.+++.+....|+
T Consensus 166 ----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 166 ----AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1123467888889999999999999999887765 478899999999999999999988887766553
No 78
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.77 E-value=1.4e-15 Score=154.97 Aligned_cols=306 Identities=13% Similarity=0.036 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--C------------
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP--R------------ 70 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~------------ 70 (470)
..+..+...|.+.|++++|...|++... | +...|..+...|.+.|++++|+..|++.++..+ +
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 3445555666666666666666666532 2 345566666666666666666666666554321 1
Q ss_pred ----------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 71 ----------------------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA 128 (470)
Q Consensus 71 ----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 128 (470)
+..++..+...|.+.|++++|...|+... +.+...|..+...+...+..+.|...
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 11233445556666666666666666542 23445555555554444444444333
Q ss_pred H-----------------------hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q psy16214 129 F-----------------------EANDYRTAMFYLDRAMDQG-VASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ 184 (470)
Q Consensus 129 ~-----------------------~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 184 (470)
+ ..|.+++|...+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~ 389 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---K 389 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---C
Confidence 2 2366666666666666654 44455666677777777777777777776653 2
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLK--LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262 (470)
Q Consensus 185 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 262 (470)
+..+|..+...|...|+.++|+..|++... ..|+..... .+ ...+...|..++|.++|+...+..
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-~l------------l~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL-AV------------LSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH-HH------------HHHHhcCCcHHHHHHHHHHHHHhc
Confidence 455677777777777777777777777655 345543322 22 445556666666666666665432
Q ss_pred ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 263 p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+-.| ....|..+..++.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++++++.|+
T Consensus 457 g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 457 RIKP--RAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred CCCC--CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 2222 1234566666666666666666666543 1223 2445666666666666666666666666666664
No 79
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.76 E-value=2.5e-15 Score=153.23 Aligned_cols=291 Identities=12% Similarity=-0.023 Sum_probs=230.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLD-PRFSKGLIRQIKCNIAL 85 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 85 (470)
+..+...|.+.|++++|...|++.. +.+..+|..+...|...|++++|+..|++..+.. .-+..++..+..++...
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 4456677888888888888887663 3456778888888888888888888888876542 12456777788888888
Q ss_pred CChHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 86 GDAPTARSNLKALQELD-PDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH 164 (470)
Q Consensus 86 g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 164 (470)
|++++|.+.+..+++.. +.+...+..+... +.+.|++++|...|+++.+ .+...|..+...|.+
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~------------y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDL------------YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGN 403 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHH------------HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH
Confidence 88888888888887754 3344454444444 5667889999999988754 355678889999999
Q ss_pred cCCHHHHHHHHHHHhhcCC-CChHHHHHHHHHHhccCChHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214 165 LNRLQEAQEIANSILATDK-QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL---APDHAKAKETYKRAKLLKAKKEEGN 240 (470)
Q Consensus 165 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~~~ 240 (470)
.|+.++|++.++++..... -+...+..+...+...|..++|..+|+...+. .|+. ..+..+ ..
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~-~~y~~l------------i~ 470 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA-MHYACM------------IE 470 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc-cchHhH------------HH
Confidence 9999999999999887532 24566778888899999999999999998764 3432 234444 88
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q psy16214 241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY 320 (470)
Q Consensus 241 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 320 (470)
.+.+.|++++|.+.+++. ...|+ ..+|..+..++...|+++.|...+++.+.+.|++...|..++.+|...|++
T Consensus 471 ~l~r~G~~~eA~~~~~~~-~~~p~-----~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA-PFKPT-----VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHhcCCHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 899999999999998764 22332 467999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q psy16214 321 KECVIDAEKIYKMD 334 (470)
Q Consensus 321 ~~A~~~~~~a~~~~ 334 (470)
++|.+.++...+..
T Consensus 545 ~~A~~v~~~m~~~g 558 (697)
T PLN03081 545 AEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999887653
No 80
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.5e-18 Score=159.65 Aligned_cols=68 Identities=50% Similarity=0.765 Sum_probs=62.0
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
.+||++|||.++++.+||++|||++|++||||+++.. .+++++|++|++||+||+||+||+.||..++
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~-----~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-----KEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----cHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 6899999999999999999999999999999998741 3578899999999999999999999998543
No 81
>KOG1127|consensus
Probab=99.75 E-value=7.7e-16 Score=148.66 Aligned_cols=306 Identities=11% Similarity=-0.010 Sum_probs=237.9
Q ss_pred hcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16214 16 KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL 95 (470)
Q Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 95 (470)
..++...|...|-++++++|+.+.++..+|..|...-+...|..+|.+|.++||.+..+.-..+..|....+++.|....
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34557888999999999999999999999999998889999999999999999999999999999999999999998886
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy16214 96 KALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIA 175 (470)
Q Consensus 96 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 175 (470)
..+-+..|.....+. ....+..+++.++...|+..++.+++.+|.+...|..+|.+|...|++..|++.+
T Consensus 550 l~~~qka~a~~~k~n----------W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKEN----------WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVF 619 (1238)
T ss_pred HHHhhhchHHHHHhh----------hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhh
Confidence 666665554332211 1224445778899999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH-----------------------------------
Q psy16214 176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA----------------------------------- 220 (470)
Q Consensus 176 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------------------------- 220 (470)
.++..++|.+.-..+..+.+....|+|.+|+..+...+.......
T Consensus 620 ~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 620 TKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred hhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999999988888888888888888888887766544221110
Q ss_pred --------------HHHHHHHHH--------------------------------------------------HHHHHHH
Q psy16214 221 --------------KAKETYKRA--------------------------------------------------KLLKAKK 236 (470)
Q Consensus 221 --------------~~~~~~~~~--------------------------------------------------~~~~~~~ 236 (470)
..|...+.. .....+.
T Consensus 700 ~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~Wy 779 (1238)
T KOG1127|consen 700 SFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWY 779 (1238)
T ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHH
Confidence 000000000 0001111
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy16214 237 EEGNEKFV--------AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALS 308 (470)
Q Consensus 237 ~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 308 (470)
+.|..|+. ..+...|+.++.++++++.+ +...|..+|.+ ...|++.-|..+|-+++...|....+|.
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an----n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~ 854 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN----NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWL 854 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc----cHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhee
Confidence 22444433 12335788888888888888 44568888887 5668888888999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 309 RRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 309 ~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++|.++....+++.|...+.++..++|.
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhhhhcCch
Confidence 9999999999999999999999999996
No 82
>KOG0553|consensus
Probab=99.75 E-value=2.2e-17 Score=139.91 Aligned_cols=113 Identities=41% Similarity=0.532 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.++.+...|+.+++.++|.+|+..|++||.++|+++..|.++|.+|.++|.++.|++.++.+|.+||.+.++|.+||.+|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
..+|++++|++.|+++++++|++...+..|...
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999999999999999999999776655544
No 83
>KOG1127|consensus
Probab=99.74 E-value=3.9e-16 Score=150.67 Aligned_cols=315 Identities=12% Similarity=0.062 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF--SKGLIRQIKC 81 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~ 81 (470)
+-++-.+|..|...-+...|..+|.+|.+++|.++.+.-..+..|....+++.|...+-.+-+..|.. ...|..+|..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 34677888888888889999999999999999887777777777777777666666655555555433 2344456666
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH----------------------HHHHHHHhcCCHHHHHH
Q psy16214 82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF----------------------EGASKAFEANDYRTAMF 139 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~----------------------~~a~~~~~~~~~~~A~~ 139 (470)
|...++...|+..|+.++..+|++...|..++..|...|.+ ..|......|.|.+|+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 66666666666666666666666666666666654333222 22222333466666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHhh-------c----------------------CC
Q psy16214 140 YLDRAMDQGVASKTYKLMKAECLAHLN-------RLQEAQEIANSILA-------T----------------------DK 183 (470)
Q Consensus 140 ~~~~~l~~~p~~~~~~~~~a~~~~~~~-------~~~~A~~~~~~~l~-------~----------------------~p 183 (470)
.+...+............+|+++.+.- -...|...+++.+. . .|
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 666666666655566666666655431 12222222222211 0 01
Q ss_pred C-----------------------------------------ChHHHHHHHHHHhc--------cCChHHHHHHHHHHHh
Q psy16214 184 Q-----------------------------------------NPDAVFVRGLCLYY--------DDKMDLAVNHFQLLLK 214 (470)
Q Consensus 184 ~-----------------------------------------~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~ 214 (470)
+ ++..|+++|..|++ +.+...|+.++.++++
T Consensus 732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~ 811 (1238)
T KOG1127|consen 732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS 811 (1238)
T ss_pred cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 1 02346677766654 2233578888999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16214 215 LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294 (470)
Q Consensus 215 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (470)
++.++...|..+ |.+ ...|++.-|..+|-+++...|. ..-.|.|+|.++.+..+++-|...+.
T Consensus 812 L~ann~~~WnaL------------GVl-sg~gnva~aQHCfIks~~sep~----~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 812 LCANNEGLWNAL------------GVL-SGIGNVACAQHCFIKSRFSEPT----CHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred HhhccHHHHHHH------------HHh-hccchhhhhhhhhhhhhhcccc----chhheeccceeEEecccHHHhhHHHH
Confidence 998888888887 766 6668999999999999999999 45679999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214 295 LALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 295 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 335 (470)
++..++|.+...|...+.+....|+.-+++..+....++..
T Consensus 875 ~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~ 915 (1238)
T KOG1127|consen 875 SVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS 915 (1238)
T ss_pred hhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence 99999999999999999999999999999999998555443
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.74 E-value=3.4e-15 Score=142.21 Aligned_cols=302 Identities=14% Similarity=0.074 Sum_probs=214.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
..+.+.-...++...|++++|+++++.....-++...++-.+|.+++.+|++++|...|...|+.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45677888899999999999999999998888889999999999999999999999999999999999999999999888
Q ss_pred HHcC-----ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhCCCCHHHHH
Q psy16214 83 IALG-----DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYR-TAMFYLDRAMDQGVASKTYKL 156 (470)
Q Consensus 83 ~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~l~~~p~~~~~~~ 156 (470)
.... +.+.-...|+......|....+....-.... -..+. .+..++...+.. ..|.+..
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~-------------g~~F~~~~~~yl~~~l~K--gvPslF~ 147 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE-------------GDEFKERLDEYLRPQLRK--GVPSLFS 147 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCC-------------HHHHHHHHHHHHHHHHhc--CCchHHH
Confidence 4333 4677788888888888875544222111100 01111 122233333322 2333444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhc---------------CCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCCh
Q psy16214 157 MKAECLAHLNRLQEAQEIANSILAT---------------DKQN--PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH 219 (470)
Q Consensus 157 ~~a~~~~~~~~~~~A~~~~~~~l~~---------------~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 219 (470)
.+-.+|....+..-...++...+.. .|.. ..+++.+|..|...|++++|+.++++++...|..
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~ 227 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL 227 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Confidence 4433443322222222222222111 1111 2356788888888999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 220 AKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
++.+... |.++-..|++.+|.+.++.+-.+++.+..+ -...+..+++.|+.++|...+..-...
T Consensus 228 ~ely~~K------------arilKh~G~~~~Aa~~~~~Ar~LD~~DRyi----NsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 228 VELYMTK------------ARILKHAGDLKEAAEAMDEARELDLADRYI----NSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHH------------HHHHHHCCCHHHHHHHHHHHHhCChhhHHH----HHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 8887776 889999999999999999999888886544 444577888889999998888776554
Q ss_pred C--CCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214 300 D--PNY-------LKALSRRCKCFHALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 300 ~--p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 335 (470)
+ |.. .+.....|.+|.+.|++..|+..|..+.+...
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3 211 33445578899999999999998888887754
No 85
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.74 E-value=3.9e-18 Score=158.11 Aligned_cols=88 Identities=36% Similarity=0.638 Sum_probs=72.3
Q ss_pred ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCC
Q psy16214 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSG 434 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~ 434 (470)
..+||++|||.++++.+|||+|||++|++||||++.+ .++|++|++||+|||||+||+.||..+...-.++
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---------~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~ 97 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---------PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGG 97 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---------HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccC
Confidence 4699999999999999999999999999999999753 3689999999999999999999998554321122
Q ss_pred CCCCCccchhHHHHHHHhcCCC
Q psy16214 435 MGGHAGANLFEQHMFQTYFDPG 456 (470)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~ 456 (470)
+++.|+ .++|..||++|
T Consensus 98 ~~~~d~-----~d~f~~~Fggg 114 (421)
T PTZ00037 98 EQPADA-----SDLFDLIFGGG 114 (421)
T ss_pred CCCcch-----hhhHHHhhccc
Confidence 233455 77889988754
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.73 E-value=2.1e-15 Score=132.83 Aligned_cols=148 Identities=24% Similarity=0.247 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH---HHHHHHHHHhcc--------CChHHHHHHHHHHHhhCCChHHHH
Q psy16214 155 KLMKAECLAHLNRLQEAQEIANSILATDKQNPD---AVFVRGLCLYYD--------DKMDLAVNHFQLLLKLAPDHAKAK 223 (470)
Q Consensus 155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~ 223 (470)
++.+|.++...|++++|+..++++++..|+++. +++.+|.++... |++++|+..+++++..+|++....
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 344455555555555555555555555554443 455555555443 678888888888888888876655
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16214 224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303 (470)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (470)
..+..+.... .. .......+|.++...|++.+|+..+++++...|+.
T Consensus 153 ~a~~~~~~~~----------------~~-----------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 153 DAKKRMDYLR----------------NR-----------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHHHHHHHHH----------------HH-----------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 4331111100 00 01123456677777777777777777777775543
Q ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214 304 ---LKALSRRCKCFHALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 304 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 335 (470)
+.+++.+|.++..+|++++|..+++.+....|
T Consensus 200 ~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 200 PATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 46777777777777777777777766665554
No 87
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=9.4e-18 Score=154.59 Aligned_cols=96 Identities=42% Similarity=0.732 Sum_probs=73.4
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cC-C-
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-ME-D- 432 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~-~- 432 (470)
.+||++|||.++++.++|++|||+++++||||+++. ..+++++|++|++||+||+||+||+.||..++. .. .
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~ 78 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG-----NKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGA 78 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----chHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhcccc
Confidence 589999999999999999999999999999999864 235788999999999999999999999984432 11 1
Q ss_pred CC--CCCCCcc-chh--HHHHHHHhcCCC
Q psy16214 433 SG--MGGHAGA-NLF--EQHMFQTYFDPG 456 (470)
Q Consensus 433 ~~--~~~~~~~-~~~--~~~~~~~~~~~~ 456 (470)
++ .+++.++ +.| .+++|+.||++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~d~f~~ffgg~ 107 (372)
T PRK14286 79 GGFGQGAYTDFSDIFGDFGDIFGDFFGGG 107 (372)
T ss_pred CCCCCCCcccccccccchhhHHHHhhCCC
Confidence 11 1111111 011 168899999754
No 88
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=1.1e-17 Score=154.17 Aligned_cols=94 Identities=45% Similarity=0.733 Sum_probs=73.3
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCC-
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSG- 434 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~- 434 (470)
.+||++|||.++++.+||++|||+++++||||++++ ..++++|++|++||++|+||+||+.||..++....++
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~------~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~ 77 (371)
T PRK14287 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA------PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGF 77 (371)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccccc
Confidence 689999999999999999999999999999999764 3577899999999999999999999998554211111
Q ss_pred -CCCCCccchhHHHHHHHhcCCC
Q psy16214 435 -MGGHAGANLFEQHMFQTYFDPG 456 (470)
Q Consensus 435 -~~~~~~~~~~~~~~~~~~~~~~ 456 (470)
++|+++++.| +++|++||++|
T Consensus 78 ~~~~~~~f~~~-~d~f~~~fgg~ 99 (371)
T PRK14287 78 GGGGAGDFGGF-SDIFDMFFGGG 99 (371)
T ss_pred CCCCCccccch-HHHHHhhhccc
Confidence 1111111112 68899999754
No 89
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=9.4e-18 Score=154.38 Aligned_cols=67 Identities=42% Similarity=0.654 Sum_probs=61.8
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
++||++|||.++++.++|++|||++|++||||++++ ..++++|++|++||+|||||+||+.||..+.
T Consensus 4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~------~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS------PDAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------chHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 699999999999999999999999999999999864 3578899999999999999999999999543
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.72 E-value=2.3e-14 Score=134.71 Aligned_cols=284 Identities=13% Similarity=-0.057 Sum_probs=206.5
Q ss_pred cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHH
Q psy16214 33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIA 109 (470)
Q Consensus 33 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 109 (470)
.+|+.+.++..+|.++...|+.+.|...+.++....|.+ .+.....+.++...|++++|...++++++..|++..++
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 379999999999999999999999999999988887754 55677889999999999999999999999999998665
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHH
Q psy16214 110 QESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAV 189 (470)
Q Consensus 110 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 189 (470)
.. +..+...+ ...+....+...+.......|.....+..+|.++...|++++|+..+++++...|+++.++
T Consensus 81 ~~-~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~ 151 (355)
T cd05804 81 KL-HLGAFGLG--------DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAV 151 (355)
T ss_pred HH-hHHHHHhc--------ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH
Confidence 43 22211111 1134444555555554466778888888899999999999999999999999999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccch
Q psy16214 190 FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ 269 (470)
Q Consensus 190 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 269 (470)
..+|.++...|++++|+..+++++...|.++..... .+...+.++...|++++|+..|++++...|.....
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~--------~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~- 222 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH--------NWWHLALFYLERGDYEAALAIYDTHIAPSAESDPA- 222 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH--------HHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChH-
Confidence 999999999999999999999999988754322110 01122899999999999999999998766632211
Q ss_pred HHH--HHHHHHHHHHcCCHHHHHHH--H-HHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 270 SKL--LHNRATVLFKMGKYNEAIAD--C-TLALEKDPN--YLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 270 ~~~--~~~la~~~~~~g~~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
... ...+...+...|....+..+ . .......|. ........+.++...|+.++|...++.+....
T Consensus 223 ~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 223 LDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111 11222333334432222222 1 111111122 22333468889999999999999998876643
No 91
>KOG2376|consensus
Probab=99.72 E-value=1.1e-13 Score=127.23 Aligned_cols=334 Identities=14% Similarity=0.103 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
..++..-+.+...++|++|+....+++...|++..++...-.|++..++|++|+...++-....-.+ ...+..|.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 4667777888899999999999999999999999999999999999999999996555433221111 122789999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH 164 (470)
Q Consensus 85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 164 (470)
++..++|+.+++ ..++.+..+.... |..+++.++|++|+..|+.+++.+.++.+.......+-..
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~------------AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELR------------AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA 156 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 999999999999 3455555454333 4448889999999999999998877776554422221111
Q ss_pred cCCHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHhhC--------CChHHHHHHHHHHHHHHHH
Q psy16214 165 LNRLQEAQEIANSILATDKQ-NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA--------PDHAKAKETYKRAKLLKAK 235 (470)
Q Consensus 165 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~ 235 (470)
. -..+ . ..+.+...|. +.+.+++.+.++...|+|.+|++.+++++++. .+.......+..+.
T Consensus 157 a--~l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir----- 227 (652)
T KOG2376|consen 157 A--ALQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR----- 227 (652)
T ss_pred H--hhhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH-----
Confidence 1 0111 1 3444444554 57799999999999999999999999995432 11122222222222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchH---------------------------------------------
Q psy16214 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININS--------------------------------------------- 270 (470)
Q Consensus 236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------------------------------------------- 270 (470)
..++.++..+|+.++|...|...++.+|.+....+
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 22388999999999999999999988776543211
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q psy16214 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLL 350 (470)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~ 350 (470)
.++.+.+...+..+.-+.+.+.+...-...|...-..........+...+.+|...+....+-+|.......|..++..+
T Consensus 308 ~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 308 AIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 22223333333333333332222222222232222222222222222356667777777777777665666666666666
Q ss_pred hcccccchhhhcc
Q psy16214 351 KRSEVKDYYKILG 363 (470)
Q Consensus 351 ~~~~~~~~y~~lg 363 (470)
..+......++|.
T Consensus 388 s~gn~~~A~~il~ 400 (652)
T KOG2376|consen 388 SQGNPEVALEILS 400 (652)
T ss_pred hcCCHHHHHHHHH
Confidence 6666555555554
No 92
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=3.2e-17 Score=146.18 Aligned_cols=67 Identities=55% Similarity=0.798 Sum_probs=61.4
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
.+||++||+..+++.++|++|||+++++||||++++ ..++++|+.|++||++|+|+++|+.||..+.
T Consensus 4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS------PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 689999999999999999999999999999999864 3578899999999999999999999998443
No 93
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=3e-17 Score=150.89 Aligned_cols=96 Identities=46% Similarity=0.804 Sum_probs=74.2
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCc-C-CC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIM-E-DS 433 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~-~-~~ 433 (470)
++||++||+...++.++|++|||+++++||||+++.. ..++++|++|++||+||+|++||..||..++.. . .+
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~ 77 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-----KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGG 77 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-----HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCC
Confidence 5899999999999999999999999999999998652 357889999999999999999999999954421 1 11
Q ss_pred C---C-CCCCccc-hh--HHHHHHHhcCCC
Q psy16214 434 G---M-GGHAGAN-LF--EQHMFQTYFDPG 456 (470)
Q Consensus 434 ~---~-~~~~~~~-~~--~~~~~~~~~~~~ 456 (470)
+ + +|+++++ .| .+++|+.||+++
T Consensus 78 ~~~~~~~g~~~~~~~~~~~~d~f~~~fgg~ 107 (365)
T PRK14285 78 GFEGFSGGFSGFSDIFEDFGDIFDSFFTGN 107 (365)
T ss_pred CccccCCCccccccccccHHHHHHHhhcCC
Confidence 1 1 2333321 11 267899999753
No 94
>PLN03077 Protein ECB2; Provisional
Probab=99.71 E-value=2.1e-13 Score=142.45 Aligned_cols=192 Identities=14% Similarity=0.016 Sum_probs=126.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHH------------------
Q psy16214 128 AFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAV------------------ 189 (470)
Q Consensus 128 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~------------------ 189 (470)
+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++++...+.+...+
T Consensus 434 y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 3445677777777766533 2344566666677777777777777777664322222222
Q ss_pred -----------------HHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy16214 190 -----------------FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAF 252 (470)
Q Consensus 190 -----------------~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 252 (470)
..+...|.+.|+.++|...|+.. +.+...|..+ ...|...|+.++|+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~l------------I~~~~~~G~~~~A~ 574 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNIL------------LTGYVAHGKGSMAV 574 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHH------------HHHHHHcCCHHHHH
Confidence 33445666677777777777664 3344455555 77788888888888
Q ss_pred HHHHHHHhh--cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16214 253 DIYTEALKI--DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP--NYLKALSRRCKCFHALGQYKECVIDAE 328 (470)
Q Consensus 253 ~~~~~al~~--~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~ 328 (470)
++|++..+. .|+. .++..+-.++.+.|++++|..+|+...+..+ .+...|..+..++.+.|++++|.+.++
T Consensus 575 ~lf~~M~~~g~~Pd~-----~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 575 ELFNRMVESGVNPDE-----VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHcCCCCCc-----ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 888887753 3442 3466666778888888888888888874322 235678888888888888888888888
Q ss_pred HHHhcCCChhHHHHHH
Q psy16214 329 KIYKMDNSRENHNFLE 344 (470)
Q Consensus 329 ~a~~~~p~~~~~~~l~ 344 (470)
+. .+.|+..++..|-
T Consensus 650 ~m-~~~pd~~~~~aLl 664 (857)
T PLN03077 650 KM-PITPDPAVWGALL 664 (857)
T ss_pred HC-CCCCCHHHHHHHH
Confidence 75 4667755544443
No 95
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=5.8e-13 Score=117.25 Aligned_cols=299 Identities=15% Similarity=0.080 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR-FSKGLIRQIKCN 82 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 82 (470)
+......|..-+..|+|.+|.....+.-+..+.....+..-+.+--++|+++.|-.++.++-+..++ .......++.++
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4566778888999999999999999998888887888888899999999999999999999998444 456788899999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHH--HHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK-TYK--LMKA 159 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~--~~~a 159 (470)
...|+++.|.....++++..|.++.+.....++ ++..|+|.....++.++-+..--+. +.. ...+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~------------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a 231 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRA------------YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA 231 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHH------------HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 999999999999999999999999998766666 5666777777777777666533222 111 1111
Q ss_pred HH--HHHcCC---HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Q psy16214 160 EC--LAHLNR---LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA 234 (470)
Q Consensus 160 ~~--~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 234 (470)
.. +.+..+ .+.-..+++..-..-.+++.+...++.-+...|+.++|.+..+.+++..-+... ..
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L-~~---------- 300 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL-CR---------- 300 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH-HH----------
Confidence 11 112222 222223455544445567888888999999999999999999999987665441 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCF 314 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 314 (470)
-.-...-++...=++..++.++..|+++ .++..+|..+++.+.|.+|..+++.+++..|+ ...+..+|.++
T Consensus 301 ----~~~~l~~~d~~~l~k~~e~~l~~h~~~p----~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~ 371 (400)
T COG3071 301 ----LIPRLRPGDPEPLIKAAEKWLKQHPEDP----LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADAL 371 (400)
T ss_pred ----HHhhcCCCCchHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHH
Confidence 1223466888888999999999999965 56999999999999999999999999998877 67889999999
Q ss_pred HHhCCHHHHHHHHHHHHhcC
Q psy16214 315 HALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 315 ~~~g~~~~A~~~~~~a~~~~ 334 (470)
.++|+..+|...++.++.+.
T Consensus 372 ~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 372 DQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHcCChHHHHHHHHHHHHHh
Confidence 99999999999999998543
No 96
>PLN03077 Protein ECB2; Provisional
Probab=99.71 E-value=8.4e-14 Score=145.49 Aligned_cols=304 Identities=11% Similarity=-0.028 Sum_probs=186.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCchh----------------------------------HHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISV--CPNVA----------------------------------AYYGNRAA 46 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~----------------------------------~~~~~~a~ 46 (470)
++..|..+...+.+.|++++|+.+|++.... .|+.. .++..+..
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3456778888888999999999999877553 35432 22333344
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 47 CYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS 126 (470)
Q Consensus 47 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~ 126 (470)
.|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|+..|++.+...+.+...+..+.......+..+.+.
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 44555555555555544321 233445555555555555555555555554322222222222222222222222221
Q ss_pred -----------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--
Q psy16214 127 -----------------------KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT-- 181 (470)
Q Consensus 127 -----------------------~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-- 181 (470)
.+.+.|+.++|...++.. +.+...|..+...|...|+.++|+.+|++..+.
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 233457777777777664 445666777777777778888888877777654
Q ss_pred CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL---APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA 258 (470)
Q Consensus 182 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 258 (470)
.|+ ...+..+-..+...|..++|..+|+...+. .|+. ..+..+ ...+.+.|++++|.+.+++.
T Consensus 586 ~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~-~~y~~l------------v~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 586 NPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL-KHYACV------------VDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred CCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch-HHHHHH------------HHHHHhCCCHHHHHHHHHHC
Confidence 233 334455555677777777787777777633 3332 233344 77778888888888887764
Q ss_pred HhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 259 LKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 259 l~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
...|+ ..+|..+-.++...++.+.+....++++++.|+++..+..++.+|...|++++|.+..+...+.
T Consensus 652 -~~~pd-----~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 652 -PITPD-----PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred -CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 23443 4556666667777788888888888888888888888888888888888888888887777654
No 97
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3.4e-17 Score=151.24 Aligned_cols=94 Identities=45% Similarity=0.753 Sum_probs=73.7
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCC-CC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMED-SG 434 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~-~~ 434 (470)
++||++|||+.+++.++|++|||+++++||||++++ .+++++|++|++||+||+|+++|+.||..++.... ++
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~------~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~ 76 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD------EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGG 76 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc------HHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccC
Confidence 589999999999999999999999999999999864 35788999999999999999999999996543211 11
Q ss_pred -CCCCC-ccchhHHHHHHHhcCCC
Q psy16214 435 -MGGHA-GANLFEQHMFQTYFDPG 456 (470)
Q Consensus 435 -~~~~~-~~~~~~~~~~~~~~~~~ 456 (470)
++|+. +++.| +++|+.||++|
T Consensus 77 ~~~g~~~~f~~~-~d~f~~ffgg~ 99 (378)
T PRK14278 77 GGGGFGGGFGGL-GDVFEAFFGGG 99 (378)
T ss_pred CCCCCCcCcCch-hHHHHHHhCCC
Confidence 11211 11112 57899999754
No 98
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.9e-17 Score=152.27 Aligned_cols=66 Identities=52% Similarity=0.770 Sum_probs=61.4
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRG 426 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~ 426 (470)
++||++|||.++++.+|||+|||+++++||||+++++ +.++++|++|++||+|||||+||+.||..
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~ 74 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-----PAAEERFKAVSEAHDVLSDPAKRKEYDET 74 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-----hHHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence 6999999999999999999999999999999998752 35788999999999999999999999984
No 99
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=4.4e-17 Score=150.23 Aligned_cols=94 Identities=47% Similarity=0.775 Sum_probs=73.2
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cCC-C
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-MED-S 433 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~~-~ 433 (470)
.+||++||++.+++.++|++|||+++++||||+++++ .+++++|++|++||+||+||.+|+.||..+.. ... +
T Consensus 4 ~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~ 78 (373)
T PRK14301 4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-----PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNG 78 (373)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-----hHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCC
Confidence 6899999999999999999999999999999998752 35788999999999999999999999984432 111 1
Q ss_pred CCCCC----CccchhHHHHHHHhcCC
Q psy16214 434 GMGGH----AGANLFEQHMFQTYFDP 455 (470)
Q Consensus 434 ~~~~~----~~~~~~~~~~~~~~~~~ 455 (470)
+++|+ ++++.| +++|++||++
T Consensus 79 ~~~g~~~~~~~~~~f-~d~f~~~fg~ 103 (373)
T PRK14301 79 GFGGFSSAEDIFSHF-SDIFGDLFGF 103 (373)
T ss_pred CCCCcccccccccch-HHHHHHHhhc
Confidence 11222 222223 6788888863
No 100
>KOG0553|consensus
Probab=99.69 E-value=4.7e-16 Score=131.95 Aligned_cols=120 Identities=35% Similarity=0.527 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214 231 LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR 310 (470)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (470)
....++.+|+-+.+.++|.+|+..|.+||.++|+++ ..|+++|.+|.++|.++.|++.|+.++.++|.+.++|.++
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA----VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA----VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 445567779999999999999999999999999954 5699999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhccc
Q psy16214 311 CKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKRSE 354 (470)
Q Consensus 311 a~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~~~ 354 (470)
|.+|..+|++++|++.|+++++++|+ ...+..|..++..+.+..
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999998 566888988888886554
No 101
>KOG3785|consensus
Probab=99.69 E-value=2.1e-13 Score=117.77 Aligned_cols=302 Identities=16% Similarity=0.109 Sum_probs=206.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q psy16214 13 TQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTA 91 (470)
Q Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 91 (470)
.++...+|..|+..++-.+..+... ...-..+|.|++.+|+|++|+..|+-+...+.-+.+.+.++|.|+.-+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 4567889999999999888776543 356677899999999999999999999887777889999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHH------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214 92 RSNLKALQELDPDNPAIAQESKALE------------------TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT 153 (470)
Q Consensus 92 ~~~~~~~l~~~p~~~~~~~~l~~~~------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 153 (470)
.....++ |+++--...+-.+. ....++..|...+.+-.|++|++.|.+++..+|....
T Consensus 111 ~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 111 KSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 9887765 33332111111111 1133455666677778999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc----------------------------------
Q psy16214 154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD---------------------------------- 199 (470)
Q Consensus 154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------------------------------- 199 (470)
+...+|.||.++.-|+-+.+.+.--++..|+++-+....+..+++.
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 9999999999999999999999988888888877766666555442
Q ss_pred --------------------------------CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16214 200 --------------------------------DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGK 247 (470)
Q Consensus 200 --------------------------------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (470)
++..+|+...+ .++|..+.-+.. +|.+....|+
T Consensus 267 FrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~Eyil------------Kgvv~aalGQ 331 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYIL------------KGVVFAALGQ 331 (557)
T ss_pred EeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHH------------HHHHHHHhhh
Confidence 22222222221 122222222221 2444444444
Q ss_pred HHHHHHHHHHH---HhhcccCccc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Q psy16214 248 NQEAFDIYTEA---LKIDARNINI--NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322 (470)
Q Consensus 248 ~~~A~~~~~~a---l~~~p~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 322 (470)
-....++++-| +.+-..+... ...-...+|.+++-..++++.+.++...-...-++....+++|.++...|++.+
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHH
Confidence 32222222221 1111100000 011244567777777788888888877777777777788888888888888888
Q ss_pred HHHHHHHHHhc
Q psy16214 323 CVIDAEKIYKM 333 (470)
Q Consensus 323 A~~~~~~a~~~ 333 (470)
|.+.|-++-..
T Consensus 412 aEelf~~is~~ 422 (557)
T KOG3785|consen 412 AEELFIRISGP 422 (557)
T ss_pred HHHHHhhhcCh
Confidence 88887766543
No 102
>KOG1915|consensus
Probab=99.69 E-value=7.3e-12 Score=112.45 Aligned_cols=329 Identities=15% Similarity=0.052 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
...|..-|.--..++++..|.+.|++|+..+..+...|...+.+-++......|...+.+|+.+-|.-...|+.....--
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34567777777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh---------------------cCCHHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE---------------------ANDYRTAMFYLD 142 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------~~~~~~A~~~~~ 142 (470)
.+|+...|.+.|++-++..|+. .+|..........+..+.|...++ .|+..-|...|.
T Consensus 153 ~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 9999999999999999988864 334444333333333333333222 244555555555
Q ss_pred HHHHh-------------------------------------CCCC--HHHHHHHHHHHHHcCCH---HHHH-----HHH
Q psy16214 143 RAMDQ-------------------------------------GVAS--KTYKLMKAECLAHLNRL---QEAQ-----EIA 175 (470)
Q Consensus 143 ~~l~~-------------------------------------~p~~--~~~~~~~a~~~~~~~~~---~~A~-----~~~ 175 (470)
++++. -|.+ ..++-.....--+-|+. ++++ -.|
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 55444 3433 11221111111222332 1222 134
Q ss_pred HHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy16214 176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIY 255 (470)
Q Consensus 176 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 255 (470)
++.++.+|.+.++|+..-.+....|+.+.-.+.|++++...|....-......+.....+ .-..-+...+.+.+.+.|
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinY--alyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINY--ALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHH
Confidence 556677888888999888888888999999999999998777643322211111111100 011122345666666666
Q ss_pred HHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214 256 TEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 256 ~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 335 (470)
+.++.+-|......+.+|...|....++.+...|...+-.||-..|. ..++.....+-.++++++.....|++.++..|
T Consensus 390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 66666666655545555655555555555555555555555555554 23333334444444555555555555555544
Q ss_pred C
Q psy16214 336 S 336 (470)
Q Consensus 336 ~ 336 (470)
+
T Consensus 469 e 469 (677)
T KOG1915|consen 469 E 469 (677)
T ss_pred H
Confidence 3
No 103
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=7.7e-17 Score=148.61 Aligned_cols=94 Identities=46% Similarity=0.803 Sum_probs=73.1
Q ss_pred ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cCCC
Q psy16214 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-MEDS 433 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~~~ 433 (470)
.++||++|||..+++.++|++|||+++++||||++++. ..++++|++|++||+||+||++|+.||..++. ...+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~ 77 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-----KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGT 77 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----hHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCC
Confidence 36899999999999999999999999999999998752 35788999999999999999999999985432 1111
Q ss_pred C---CCCCCc-cchhHHHHHHHhcC
Q psy16214 434 G---MGGHAG-ANLFEQHMFQTYFD 454 (470)
Q Consensus 434 ~---~~~~~~-~~~~~~~~~~~~~~ 454 (470)
+ ++|+++ ++.| +++|+.||+
T Consensus 78 ~~~~~~~~~~~~~~~-~d~f~~~fg 101 (366)
T PRK14294 78 GFSGFSGFDDIFSSF-GDIFEDFFG 101 (366)
T ss_pred CCCCcCccccchhhh-hhhHHHhhc
Confidence 1 122221 1112 578999887
No 104
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=7.5e-17 Score=148.87 Aligned_cols=69 Identities=52% Similarity=0.883 Sum_probs=62.2
Q ss_pred ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE 427 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~ 427 (470)
..+||++|||.++++.++|++|||+++++||||+++.. +..++++|++|++||++|+||+||+.||..+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g 71 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN----RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG 71 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc----hhHHHHHHHHHHHHHHHhcChhhHHHHhhcC
Confidence 36899999999999999999999999999999998642 2357899999999999999999999999844
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.69 E-value=1.7e-14 Score=143.39 Aligned_cols=249 Identities=13% Similarity=0.073 Sum_probs=203.5
Q ss_pred hcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214 32 SVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE 111 (470)
Q Consensus 32 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 111 (470)
..+|.+..++..+...+...+++++|+..++.+++.+|+....++.+|.++.+.+++.+|... .++...+.+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~---- 98 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK---- 98 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc----
Confidence 457889999999999999999999999999999999999999999999999999998888877 66665555432
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHH
Q psy16214 112 SKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFV 191 (470)
Q Consensus 112 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 191 (470)
+ .++.++...+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++.+
T Consensus 99 ----------------------~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn 155 (906)
T PRK14720 99 ----------------------W-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKK 155 (906)
T ss_pred ----------------------h-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHH
Confidence 2 35555566666678888899999999999999999999999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc---
Q psy16214 192 RGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI--- 268 (470)
Q Consensus 192 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--- 268 (470)
+|..+... +.++|+.++.+++.. ++..+++..+.+++.+.+..+|.+.+.
T Consensus 156 ~AY~~ae~-dL~KA~~m~~KAV~~--------------------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~ 208 (906)
T PRK14720 156 LATSYEEE-DKEKAITYLKKAIYR--------------------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLR 208 (906)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHH--------------------------HHhhhcchHHHHHHHHHHhcCcccchHHHH
Confidence 99999999 999999999998764 334457777777788877777775543
Q ss_pred -------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------------------
Q psy16214 269 -------------NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL------------------ 317 (470)
Q Consensus 269 -------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------------ 317 (470)
...++.-+=.+|...++|++++..++.+++.+|++..+...++.||...
T Consensus 209 i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~ 288 (906)
T PRK14720 209 IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGN 288 (906)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhcccc
Confidence 1223333447888999999999999999999999999999999999843
Q ss_pred --CCHHHHHHHHHHHHhcCCC
Q psy16214 318 --GQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 318 --g~~~~A~~~~~~a~~~~p~ 336 (470)
.++..|+..|++.+..+|.
T Consensus 289 ~~~~~~~~i~~fek~i~f~~G 309 (906)
T PRK14720 289 NRKPVKDCIADFEKNIVFDTG 309 (906)
T ss_pred CCccHHHHHHHHHHHeeecCC
Confidence 2345666666666665554
No 106
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=6.2e-17 Score=149.83 Aligned_cols=67 Identities=51% Similarity=0.751 Sum_probs=61.4
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
.+||++|||.+.++.+||++|||+++++||||++++ ..++++|++|++||++|+||+||+.||..++
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~------~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE------PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 689999999999999999999999999999999875 2467889999999999999999999998443
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=1.9e-15 Score=120.72 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=109.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
++..++..|..+...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l 102 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL 102 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETM 118 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 118 (470)
..+|++++|+..|.+++.+.|+++..+..++.+...
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999998777776443
No 108
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=1.1e-16 Score=148.46 Aligned_cols=68 Identities=51% Similarity=0.866 Sum_probs=62.2
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
.+||++|||..+++.++|++|||+++++||||+++. ...++++|++|++||++|+||++|+.||..++
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-----~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG-----NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 589999999999999999999999999999999875 23578899999999999999999999998543
No 109
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=1e-16 Score=147.86 Aligned_cols=94 Identities=43% Similarity=0.738 Sum_probs=72.4
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cCCC-
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-MEDS- 433 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~~~- 433 (470)
++||++||+...++.+||++|||+++++||||++++ ..++++|++|++||++|+||+||+.||..+.. ...+
T Consensus 5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~ 78 (377)
T PRK14298 5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE------PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQY 78 (377)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC------hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccccccc
Confidence 699999999999999999999999999999999864 34678999999999999999999999985432 1111
Q ss_pred C-CCCCC--ccchhHHHHHHHhcCCC
Q psy16214 434 G-MGGHA--GANLFEQHMFQTYFDPG 456 (470)
Q Consensus 434 ~-~~~~~--~~~~~~~~~~~~~~~~~ 456 (470)
+ .+++. .++.| +++|++||+||
T Consensus 79 ~~~~~~~~~~~~~~-~d~f~~~Fgg~ 103 (377)
T PRK14298 79 SAEDIFRGADFGGF-GDIFEMFFGGG 103 (377)
T ss_pred CcccccccCCcCcc-hhhhHhhhcCC
Confidence 0 00010 11112 57899999754
No 110
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1e-16 Score=148.42 Aligned_cols=65 Identities=54% Similarity=0.850 Sum_probs=60.5
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR 425 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~ 425 (470)
.+||++|||.++++.++|++|||+++++||||+++.. ..++++|++|++||+||+||++|+.||.
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-----AKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-----hhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 5899999999999999999999999999999998652 3578899999999999999999999996
No 111
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1.3e-16 Score=147.52 Aligned_cols=95 Identities=42% Similarity=0.705 Sum_probs=72.5
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCc-CCC-
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIM-EDS- 433 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~-~~~- 433 (470)
.+||++|||..+++.++|++|||+++++||||++++ ..++++|++|++||++|+||+||+.||..++.. ..+
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~------~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~ 77 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE------EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGF 77 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCc
Confidence 689999999999999999999999999999999865 247889999999999999999999999954421 111
Q ss_pred CCCCC--Cccc-hh-HHHHHHHhcCCC
Q psy16214 434 GMGGH--AGAN-LF-EQHMFQTYFDPG 456 (470)
Q Consensus 434 ~~~~~--~~~~-~~-~~~~~~~~~~~~ 456 (470)
+.+|+ ++++ .| .+++|.+||+||
T Consensus 78 ~~~~~~~~~~~~~~~~~d~f~~~fgg~ 104 (376)
T PRK14280 78 GGGGFGGGDFGGGFGFEDIFSSFFGGG 104 (376)
T ss_pred CCCCCCCCCccccccchhhHHHHhCCc
Confidence 11110 0110 01 168899999754
No 112
>KOG1130|consensus
Probab=99.66 E-value=9.4e-15 Score=128.43 Aligned_cols=284 Identities=17% Similarity=0.132 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----AAYYGNRAACYMMLGMYTYALDDAKLAVSL------DPRFSKG 74 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~~ 74 (470)
-.+...|..+++.|++...+..|+.|++.-.++ ..+|..+|.+|+.+++|++|+++-..-+.+ .-..+++
T Consensus 18 leLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 18 LELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 346678999999999999999999999987665 567889999999999999999876543332 2233566
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214 75 LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTY 154 (470)
Q Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 154 (470)
--++|.++.-+|.|++|+.+..+-+.+... ++. ... ...+
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~are-------LgD------rv~---------------------------e~RA 137 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARE-------LGD------RVL---------------------------ESRA 137 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHH-------HhH------HHh---------------------------hhHH
Confidence 678999999999999999998876653211 110 000 1122
Q ss_pred HHHHHHHHHHcCC--------------------HHHHHHHHHHHhhcCCC------ChHHHHHHHHHHhccCChHHHHHH
Q psy16214 155 KLMKAECLAHLNR--------------------LQEAQEIANSILATDKQ------NPDAVFVRGLCLYYDDKMDLAVNH 208 (470)
Q Consensus 155 ~~~~a~~~~~~~~--------------------~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~ 208 (470)
++++|.+|...|+ ++.|.++|..-+++... ...++-++|..|+.+|+|+.|+..
T Consensus 138 lYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~ 217 (639)
T KOG1130|consen 138 LYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHF 217 (639)
T ss_pred HhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHH
Confidence 3333333333322 23344444444433222 245778899999999999999998
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cccCccchHHHHHHHHHHHHHcCCH
Q psy16214 209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI--DARNININSKLLHNRATVLFKMGKY 286 (470)
Q Consensus 209 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~la~~~~~~g~~ 286 (470)
-+.-+.+...... +.....++.+.|+++.-.|+++.|+++|+..+.+ .-.+....+...+.+|..|.-+.++
T Consensus 218 H~~RL~ia~efGD------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~ 291 (639)
T KOG1130|consen 218 HKLRLEIAQEFGD------RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV 291 (639)
T ss_pred HHHHHHHHHHhhh------HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH
Confidence 8877765443322 1222233445599999999999999999998754 3334444678889999999999999
Q ss_pred HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 287 NEAIADCTLALEKD------PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 287 ~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
++|+.+..+-+.+. .....+++.+|.++-.+|..++|+.+.++.+++.
T Consensus 292 ~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 292 QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999887663 3347889999999999999999999998888764
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=3.8e-15 Score=119.03 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=45.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 318 (470)
|.++...|++++|+..|++++..+|. ...++..+|.++..+|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPW----SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 44444444444444444444444444 23334444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHhcCCC
Q psy16214 319 QYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 319 ~~~~A~~~~~~a~~~~p~ 336 (470)
++++|+..|++++++.|+
T Consensus 107 ~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 444444444444444444
No 114
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=4.1e-16 Score=144.50 Aligned_cols=96 Identities=49% Similarity=0.851 Sum_probs=73.5
Q ss_pred ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cC-C
Q psy16214 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-ME-D 432 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~-~ 432 (470)
..+||++||+...++.++|++|||+++++||||+++++ ..++++|++|++||++|+|+++|..||..+.. .. .
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~ 77 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-----KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQG 77 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----HHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccC
Confidence 36899999999999999999999999999999998642 34788999999999999999999999985432 11 1
Q ss_pred C---CCCCCCcc-chhHHHHHHHhcCCC
Q psy16214 433 S---GMGGHAGA-NLFEQHMFQTYFDPG 456 (470)
Q Consensus 433 ~---~~~~~~~~-~~~~~~~~~~~~~~~ 456 (470)
+ |++|++++ ++| +++|++||++|
T Consensus 78 ~~~~~~~~~~~~~~~f-~~~f~~~fgg~ 104 (371)
T PRK10767 78 GGGGGFGGGGGFGDIF-GDIFGDIFGGG 104 (371)
T ss_pred CCCCCCCCccccccch-hhhhhhhccCC
Confidence 1 11121111 223 67888888653
No 115
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=4e-16 Score=145.18 Aligned_cols=68 Identities=53% Similarity=0.863 Sum_probs=61.9
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
.+||++||++..++.++|++|||+++++||||++++. ..++++|++|++||++|+|+++|+.||..+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-----KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-----hHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 5899999999999999999999999999999998752 3577899999999999999999999998443
No 116
>KOG3785|consensus
Probab=99.65 E-value=1.8e-13 Score=118.30 Aligned_cols=299 Identities=15% Similarity=0.114 Sum_probs=188.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh--------------cCCC--
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVS--------------LDPR-- 70 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--------------~~p~-- 70 (470)
-.-+|.+++..|+|++|+..|+-+...+.-+.+.+.++|.|++-+|.|.+|.....++-+ ++..
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 344689999999999999999999887777788999999999999998888876655422 1110
Q ss_pred ----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc---------
Q psy16214 71 ----------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEA--------- 131 (470)
Q Consensus 71 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------- 131 (470)
..+-...+|.+++..-.|++|+..|.+++.-+|+.......++-++.....+..+...+..
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 1123345566666666788888888888887777666555555555444333332222110
Q ss_pred ---------------C----------------CH-----------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 132 ---------------N----------------DY-----------------RTAMFYLDRAMDQGVASKTYKLMKAECLA 163 (470)
Q Consensus 132 ---------------~----------------~~-----------------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 163 (470)
| .| +.|+..+-.++.. -+++..+++..|.
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL~iYyL 296 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNLIIYYL 296 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhheeeec
Confidence 1 11 2222222222222 3467888999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHH---HhhCCC------hHHHHHHHHHHHHHHH
Q psy16214 164 HLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL---LKLAPD------HAKAKETYKRAKLLKA 234 (470)
Q Consensus 164 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~---l~~~p~------~~~~~~~~~~~~~~~~ 234 (470)
..++.++|+.+++. ++|..|.-+...|.+....|+--...++++-+ +.+-.. ........
T Consensus 297 ~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm-------- 365 (557)
T KOG3785|consen 297 NQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM-------- 365 (557)
T ss_pred ccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH--------
Confidence 99999999998875 68999999999999999888765544444433 222211 11222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q psy16214 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD-PNYLKALSRRCKC 313 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 313 (470)
+..++-..++++.+.++...-....++. ...+++|.++...|++.+|.+.|-+.-... .+.......+|+|
T Consensus 366 ----As~fFL~~qFddVl~YlnSi~sYF~NdD----~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArC 437 (557)
T KOG3785|consen 366 ----ASYFFLSFQFDDVLTYLNSIESYFTNDD----DFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARC 437 (557)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhcCcc----hhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHH
Confidence 5556666666666666655444433322 236667777777777777777665544333 2223344556777
Q ss_pred HHHhCCHHHHHHHH
Q psy16214 314 FHALGQYKECVIDA 327 (470)
Q Consensus 314 ~~~~g~~~~A~~~~ 327 (470)
|...+..+.|...+
T Consensus 438 yi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMM 451 (557)
T ss_pred HHhcCCchHHHHHH
Confidence 77777776665544
No 117
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=3.6e-16 Score=145.36 Aligned_cols=67 Identities=58% Similarity=0.877 Sum_probs=61.5
Q ss_pred chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
+||++|||..+++.++|++|||+++++||||++++ ...++++|+.|++||++|+|++||+.||..++
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~-----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG-----DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----chHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 79999999999999999999999999999999875 23578899999999999999999999998543
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.64 E-value=8.3e-14 Score=117.44 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=127.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q psy16214 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237 (470)
Q Consensus 158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 237 (470)
-+-.|+..|+++......+... +|.. -+...++.++++..++++++.+|++...|..+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~L----------- 79 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALL----------- 79 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHH-----------
Confidence 3456778888877654443221 1211 11236778899999999999999999999998
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVL-FKMGK--YNEAIADCTLALEKDPNYLKALSRRCKCF 314 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~ 314 (470)
|.++...|++++|+..|++++++.|++ ..++..+|.++ ...|+ +++|...++++++.+|+++.++..+|.++
T Consensus 80 -g~~~~~~g~~~~A~~a~~~Al~l~P~~----~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~ 154 (198)
T PRK10370 80 -GEYYLWRNDYDNALLAYRQALQLRGEN----AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDA 154 (198)
T ss_pred -HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 999999999999999999999999994 56699999975 67777 59999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCC
Q psy16214 315 HALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 315 ~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
...|++++|+..|++++++.|.
T Consensus 155 ~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 155 FMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999987
No 119
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=7e-16 Score=143.20 Aligned_cols=67 Identities=55% Similarity=0.865 Sum_probs=61.7
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE 427 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~ 427 (470)
.+||++|||..+++.++|++|||+++++||||++++. ..++++|++|++||+||+|++||+.||..+
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 71 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-----KEAEQKFKEINEAYEILSDPQKRAQYDQFG 71 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-----hHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 6999999999999999999999999999999998752 357889999999999999999999999844
No 120
>KOG1915|consensus
Probab=99.63 E-value=1.8e-10 Score=103.63 Aligned_cols=326 Identities=15% Similarity=0.107 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------------
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR-------------- 70 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------- 70 (470)
..|..-+..-++......|..++++|+.+-|.-...|+.....--.+|+..-|.+.|++-++..|+
T Consensus 108 tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy 187 (677)
T KOG1915|consen 108 TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY 187 (677)
T ss_pred hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 345666777778888888888888888888888888888888888888888888888888887775
Q ss_pred ------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHHHHHHHHHH
Q psy16214 71 ------------------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA---IAQESKALETMAKNFEGASKAF 129 (470)
Q Consensus 71 ------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~~~~~~a~~~~ 129 (470)
....|...|..-...|+...|..+|.++++.-.++.. .....+.....++.++.|...+
T Consensus 188 keieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iy 267 (677)
T KOG1915|consen 188 KEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIY 267 (677)
T ss_pred hHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345555566666667777777777777665444332 2222233333333333333322
Q ss_pred h-------c-----------------CC---HHHHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214 130 E-------A-----------------ND---YRTAMF-----YLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANS 177 (470)
Q Consensus 130 ~-------~-----------------~~---~~~A~~-----~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 177 (470)
+ . |+ .++++. .|+..++.+|.+-+.|+....+....|+.+.-.+.|++
T Consensus 268 kyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 268 KYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 1 11 222222 45667788999999999999999999999999999999
Q ss_pred HhhcCCCChH-------HHHHHHHHH---hccCChHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 178 ILATDKQNPD-------AVFVRGLCL---YYDDKMDLAVNHFQLLLKLAPDH----AKAKETYKRAKLLKAKKEEGNEKF 243 (470)
Q Consensus 178 ~l~~~p~~~~-------~~~~la~~~---~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~ 243 (470)
++...|...+ ++..+-.++ +...+.+.+...|+.++++-|.. ...|..+ +....
T Consensus 348 AIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmy------------A~feI 415 (677)
T KOG1915|consen 348 AIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMY------------AQFEI 415 (677)
T ss_pred HHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHH------------HHHHH
Confidence 9998776433 222222222 45789999999999999998864 4455555 77778
Q ss_pred hcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16214 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKEC 323 (470)
Q Consensus 244 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 323 (470)
++.+...|.+.+-.|+-.+|.+. ++-....+-.++++++.+...|++-+...|.+..+|...|..-..+|+.+.|
T Consensus 416 Rq~~l~~ARkiLG~AIG~cPK~K-----lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIGKCPKDK-----LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHcccHHHHHHHHHHhccCCchh-----HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence 88888999999999999988853 4555566677888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHH
Q psy16214 324 VIDAEKIYKMDNSRENHNFLEEAKR 348 (470)
Q Consensus 324 ~~~~~~a~~~~p~~~~~~~l~~~~~ 348 (470)
...|+-|++. |.-+..+.|-++..
T Consensus 491 RaifelAi~q-p~ldmpellwkaYI 514 (677)
T KOG1915|consen 491 RAIFELAISQ-PALDMPELLWKAYI 514 (677)
T ss_pred HHHHHHHhcC-cccccHHHHHHHhh
Confidence 9999888864 44455555544444
No 121
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=1.1e-15 Score=141.51 Aligned_cols=90 Identities=42% Similarity=0.722 Sum_probs=73.0
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCC--
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDS-- 433 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~-- 433 (470)
.+||++||+...++.++|++|||+++++||||++.+ ..++++|+.|++||++|+||.+|+.||..+.....+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~------~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~ 75 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE------KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMP 75 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCccccccc
Confidence 489999999999999999999999999999999864 357889999999999999999999999854321100
Q ss_pred C---CC--CCCccchhHHHHHHHhcCCC
Q psy16214 434 G---MG--GHAGANLFEQHMFQTYFDPG 456 (470)
Q Consensus 434 ~---~~--~~~~~~~~~~~~~~~~~~~~ 456 (470)
+ .+ ++|| .++|++||+++
T Consensus 76 ~~~~~~~~~~d~-----~d~f~~~fg~~ 98 (371)
T PRK14292 76 GGDPFGGMGFDP-----MDIFEQLFGGA 98 (371)
T ss_pred CCcccCccCCCh-----HHHHHHhhCCC
Confidence 1 11 2345 68999999754
No 122
>KOG2376|consensus
Probab=99.63 E-value=1.2e-11 Score=113.97 Aligned_cols=323 Identities=15% Similarity=0.077 Sum_probs=208.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------
Q psy16214 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR----------------- 70 (470)
Q Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------------- 70 (470)
++++.+.|+.+..++|+..++ ..++.+..+....|.+++++|+|++|+..|+..++.+.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 789999999999999999999 456666778899999999999999999999988654221
Q ss_pred --------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 71 --------------FSKGLIRQIKCNIALGDAPTARSNLKALQEL--------DPDNPAIAQESKALETMAKNFEGASKA 128 (470)
Q Consensus 71 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~a~~~ 128 (470)
..+.+++.|.++...|+|.+|++.+++++.+ +.+..+....+..+ ..+.|-.+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I-----rvQlayVl 234 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI-----RVQLAYVL 234 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH-----HHHHHHHH
Confidence 3557889999999999999999999999432 22223444444444 35556667
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHH-------------------------------------------------HHH
Q psy16214 129 FEANDYRTAMFYLDRAMDQGVASKTYKL-------------------------------------------------MKA 159 (470)
Q Consensus 129 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~-------------------------------------------------~~a 159 (470)
...|+.++|...|...++.+|.+..... +.+
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999988888776653322 122
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHHHH
Q psy16214 160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-KAKETYKRAKLLKAKKEE 238 (470)
Q Consensus 160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~ 238 (470)
.+.+..+.-+.+.+.....-...|...-..........+...+.+|+..+..+...+|... .+....
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~------------ 382 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLR------------ 382 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHH------------
Confidence 2222222222222222222222222221122222222223367777777777777777763 233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhccc---CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDAR---NININSKLLHNRATVLFKMGKYNEAIADCTLALEK-------DPNYLKALS 308 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~ 308 (470)
+.+.+.+|+++.|++.+...+..... +....+.+-..+-..+.+.++...|...+.+++.- .+.....+.
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 88889999999999999944311110 00112233444555566666655565555555543 333344566
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHh
Q psy16214 309 RRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLL 350 (470)
Q Consensus 309 ~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~ 350 (470)
..+....+.|+-++|...+++.++.+|+ .++...+--+...+
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 6777888889999999999999999986 55555554444444
No 123
>KOG3060|consensus
Probab=99.62 E-value=6.3e-13 Score=109.85 Aligned_cols=173 Identities=21% Similarity=0.129 Sum_probs=116.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH
Q psy16214 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV 206 (470)
Q Consensus 127 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 206 (470)
..+..++..-|..+++++....|.+..+....|..+...|++++|+++|+..+..+|.+..++-..-.+...+|+.-+|+
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aI 140 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAI 140 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHH
Confidence 34555666667777777666667777777777777777777777777777777777777666666666666667767777
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcC--
Q psy16214 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG-- 284 (470)
Q Consensus 207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g-- 284 (470)
+.+...++..+.+.++|..+ +.+|+..|+|++|.-++++.+-+.|.++ ..+..+|.+++-+|
T Consensus 141 k~ln~YL~~F~~D~EAW~eL------------aeiY~~~~~f~kA~fClEE~ll~~P~n~----l~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 141 KELNEYLDKFMNDQEAWHEL------------AEIYLSEGDFEKAAFCLEELLLIQPFNP----LYFQRLAEVLYTQGGA 204 (289)
T ss_pred HHHHHHHHHhcCcHHHHHHH------------HHHHHhHhHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHhhH
Confidence 77777777777777777666 7777777777777777777777777633 34566666666555
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 285 -KYNEAIADCTLALEKDPNYLKALSRRCKCFH 315 (470)
Q Consensus 285 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (470)
++.-|.++|.++++++|.+..+++.+-.|-.
T Consensus 205 eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 205 ENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 3455667777777777766666655544443
No 124
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.61 E-value=1.7e-12 Score=123.96 Aligned_cols=272 Identities=15% Similarity=0.073 Sum_probs=203.9
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214 37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116 (470)
Q Consensus 37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 116 (470)
+.+++.....++...|++++|++.++.....-++....+...|.++..+|++++|...|..++..+|+|...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45778888999999999999999999988888888999999999999999999999999999999999999888777764
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214 117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQE-AQEIANSILATDKQNPDAVFVRGLC 195 (470)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~-A~~~~~~~l~~~p~~~~~~~~la~~ 195 (470)
.... -+.....+.....|+......|....+...- ..+..-..+.. +..++...+. ..-|.+...+-.+
T Consensus 83 g~~~-------~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~-L~~~~g~~F~~~~~~yl~~~l~--KgvPslF~~lk~L 152 (517)
T PF12569_consen 83 GLQL-------QLSDEDVEKLLELYDELAEKYPRSDAPRRLP-LDFLEGDEFKERLDEYLRPQLR--KGVPSLFSNLKPL 152 (517)
T ss_pred hhhc-------ccccccHHHHHHHHHHHHHhCccccchhHhh-cccCCHHHHHHHHHHHHHHHHh--cCCchHHHHHHHH
Confidence 3322 1222356677888888888888765544321 11112223333 3334444443 3455666666666
Q ss_pred HhccCChHHHHHHHHHHHh---hC------------CChHH--HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 196 LYYDDKMDLAVNHFQLLLK---LA------------PDHAK--AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA 258 (470)
Q Consensus 196 ~~~~g~~~~A~~~~~~~l~---~~------------p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 258 (470)
|....+..-....+..... .. |.... ++..+ +..|-..|++++|+++++++
T Consensus 153 y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l------------Aqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 153 YKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL------------AQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred HcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH------------HHHHHHhCCHHHHHHHHHHH
Confidence 5533333222222222221 11 11111 22333 88999999999999999999
Q ss_pred HhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 259 LKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 259 l~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
|...|+ ...+|...|.++...|++.+|.+.++.+-.+++.+-.+-...+..+++.|+.++|...+.....-+
T Consensus 221 I~htPt----~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 221 IEHTPT----LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HhcCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 999999 566799999999999999999999999999999999999999999999999999999999887665
No 125
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=1.6e-15 Score=140.57 Aligned_cols=67 Identities=55% Similarity=0.856 Sum_probs=61.6
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
++||++||+...++.++|++|||+++++||||++++ ..++++|+.|++||++|+||+||+.||....
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN------PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 689999999999999999999999999999999875 3467899999999999999999999998543
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.61 E-value=1.2e-13 Score=136.68 Aligned_cols=182 Identities=9% Similarity=-0.045 Sum_probs=153.9
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248 (470)
Q Consensus 169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (470)
.+++.-+.......|.+++++.++|.+....|.+++|...++.++++.|++..++..+ +.++.+.+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~------------a~~L~~~~~~ 136 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILM------------LRGVKRQQGI 136 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHH------------HHHHHHhccH
Confidence 3444455555667899999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16214 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328 (470)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 328 (470)
++|+..+++++..+|+ ++..++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+
T Consensus 137 eeA~~~~~~~l~~~p~----~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~ 212 (694)
T PRK15179 137 EAGRAEIELYFSGGSS----SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQ 212 (694)
T ss_pred HHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999 567799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC--hhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHH
Q psy16214 329 KIYKMDNS--RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDD 372 (470)
Q Consensus 329 ~a~~~~p~--~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~e 372 (470)
++++...+ ....+.+.+. ...-.+|+.|+.....-...
T Consensus 213 ~a~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 252 (694)
T PRK15179 213 AGLDAIGDGARKLTRRLVDL------NADLAALRRLGVEGDGRDVP 252 (694)
T ss_pred HHHHhhCcchHHHHHHHHHH------HHHHHHHHHcCcccccCCCc
Confidence 99998765 2222333222 22235677777665444333
No 127
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=1.2e-15 Score=141.34 Aligned_cols=67 Identities=51% Similarity=0.778 Sum_probs=61.7
Q ss_pred ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE 427 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~ 427 (470)
.++||++||+..+++.+||++|||+++++||||++++ ..++++|++|++||++|+|++||+.||..+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G 70 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE------EGAEEKFKEISEAYAVLSDDEKRQRYDQFG 70 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence 4699999999999999999999999999999999764 357889999999999999999999999843
No 128
>KOG0718|consensus
Probab=99.60 E-value=1.3e-15 Score=135.33 Aligned_cols=72 Identities=40% Similarity=0.713 Sum_probs=67.6
Q ss_pred ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
..++|.+|++++++++++|++|||++++.+||||+.+ ++.|+.||++|..|.+||||||||.+|..||.-+.
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~d--pd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~ 79 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTD--PDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE 79 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCC--hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 3589999999999999999999999999999999988 78899999999999999999999999999998443
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.60 E-value=2.7e-13 Score=114.30 Aligned_cols=125 Identities=12% Similarity=0.148 Sum_probs=100.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHH-hccCC--hHHHHH
Q psy16214 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCL-YYDDK--MDLAVN 207 (470)
Q Consensus 131 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 207 (470)
.++.++++..+.+++..+|++...|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 355667777788888888888888888888888888888888888888888888888888888864 56666 488888
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc
Q psy16214 208 HFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN 267 (470)
Q Consensus 208 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 267 (470)
.++++++.+|++..++..+ |..++..|++++|+.+++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~L------------A~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLL------------ASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 8888888888888888777 88888888888888888888888776543
No 130
>KOG0719|consensus
Probab=99.60 E-value=1.8e-15 Score=121.95 Aligned_cols=77 Identities=43% Similarity=0.731 Sum_probs=70.1
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGM 435 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~~ 435 (470)
.+.|.+|||.+++++.+|++||+++++.||||+.+ .+++.++..+|+.++.+|.||||+++|+.||+-+-+++-+|+
T Consensus 14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~---eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd~~~d 90 (264)
T KOG0719|consen 14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH---EEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDDESGD 90 (264)
T ss_pred cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch---hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCCccch
Confidence 48899999999999999999999999999999986 477888999999999999999999999999998877754443
No 131
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=2.9e-15 Score=138.20 Aligned_cols=95 Identities=44% Similarity=0.700 Sum_probs=72.7
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCc-CCC-
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIM-EDS- 433 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~-~~~- 433 (470)
.+||++|||..+++..||++|||+++++||||++++. ...++++|+.|++||++|+|+.+|..||..+... ..+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~ 78 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN----KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGG 78 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----hhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCC
Confidence 5899999999999999999999999999999997642 3358899999999999999999999999954421 111
Q ss_pred -CCC--CCCccchhHHHHHHHhcCC
Q psy16214 434 -GMG--GHAGANLFEQHMFQTYFDP 455 (470)
Q Consensus 434 -~~~--~~~~~~~~~~~~~~~~~~~ 455 (470)
+++ +++.++-| .++|..||++
T Consensus 79 ~~~~~~~~~~~~~~-~d~f~~~fg~ 102 (365)
T PRK14290 79 SNFNWDNFTHFSDI-NDIFNQIFGG 102 (365)
T ss_pred CCccccccccccch-hHHHHHHhcC
Confidence 111 11100111 6789998875
No 132
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.59 E-value=8.2e-14 Score=124.16 Aligned_cols=267 Identities=21% Similarity=0.216 Sum_probs=173.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q psy16214 12 NTQYKLKQYSKALKCYSEAISVCPN-VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPT 90 (470)
Q Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 90 (470)
..+|..|+|..++..++ ....+|. .......+..+++.+|+++..+..+... .+....+...++..+....+-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence 45566777777776666 2233332 3445666777777777777655444321 12233444444444433333344
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy16214 91 ARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQE 170 (470)
Q Consensus 91 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~ 170 (470)
++..++..+.... .+.++.+....|.++...|++++
T Consensus 85 ~l~~l~~~~~~~~--------------------------------------------~~~~~~~~~~~A~i~~~~~~~~~ 120 (290)
T PF04733_consen 85 ALEELKELLADQA--------------------------------------------GESNEIVQLLAATILFHEGDYEE 120 (290)
T ss_dssp HHHHHHHCCCTS-----------------------------------------------CHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHHhcc--------------------------------------------ccccHHHHHHHHHHHHHcCCHHH
Confidence 4443333322111 01223344556677777888888
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC--CH
Q psy16214 171 AQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG--KN 248 (470)
Q Consensus 171 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 248 (470)
|++.+.+. .+.+.......++...++++.|.+.++..-+.+.+........ +.+.+..| ++
T Consensus 121 AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~------------awv~l~~g~e~~ 183 (290)
T PF04733_consen 121 ALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAE------------AWVNLATGGEKY 183 (290)
T ss_dssp HHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHH------------HHHHHHHTTTCC
T ss_pred HHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHH------------HHHHHHhCchhH
Confidence 88877654 5677778888888899999999999988888877765544433 55555544 68
Q ss_pred HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-HHHHHHH
Q psy16214 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY-KECVIDA 327 (470)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~ 327 (470)
.+|.-.|++.....+. .+.++..++.+++.+|+|++|...+.+++..+|+++.++.+++.+...+|+. +.+.+++
T Consensus 184 ~~A~y~f~El~~~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHHhccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 8999999997766655 4566888999999999999999999999999999999999999999999988 6677788
Q ss_pred HHHHhcCCChhHHHHHHHHH
Q psy16214 328 EKIYKMDNSRENHNFLEEAK 347 (470)
Q Consensus 328 ~~a~~~~p~~~~~~~l~~~~ 347 (470)
.++...+|+......+....
T Consensus 260 ~qL~~~~p~h~~~~~~~~~~ 279 (290)
T PF04733_consen 260 SQLKQSNPNHPLVKDLAEKE 279 (290)
T ss_dssp HHCHHHTTTSHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHH
Confidence 88888888866555554433
No 133
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.59 E-value=3.2e-15 Score=137.96 Aligned_cols=93 Identities=49% Similarity=0.829 Sum_probs=71.5
Q ss_pred chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cCCC-C
Q psy16214 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-MEDS-G 434 (470)
Q Consensus 357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~~~-~ 434 (470)
+||++||+...++.++|++|||+++++||||++++ ..++++|+.|++||++|+|+.+|..||..+.. ...+ +
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~ 74 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD------KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGG 74 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------ccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCc
Confidence 58999999999999999999999999999999863 34678999999999999999999999984332 2111 1
Q ss_pred --CCCCCcc-----chhHHHHHHHhcCCC
Q psy16214 435 --MGGHAGA-----NLFEQHMFQTYFDPG 456 (470)
Q Consensus 435 --~~~~~~~-----~~~~~~~~~~~~~~~ 456 (470)
.++++++ +.| +++|.+||+++
T Consensus 75 ~~~~~~~~~~~~~~~~~-~~~f~~~fg~~ 102 (354)
T TIGR02349 75 GGGGGFNGFDIGFFGDF-GDIFGDFFGGG 102 (354)
T ss_pred CCCCCcCCccccCcCch-hhhHHHHhccC
Confidence 1122221 112 57899999753
No 134
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=3.3e-15 Score=137.98 Aligned_cols=66 Identities=52% Similarity=0.766 Sum_probs=60.4
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE 427 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~ 427 (470)
.+||++|||..+++.++|++|||+++++||||++.. ..++++|++|++||++|+|+.+|+.||..+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G 68 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA------KDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------cCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence 589999999999999999999999999999999764 236779999999999999999999999944
No 135
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.58 E-value=1e-11 Score=131.49 Aligned_cols=321 Identities=15% Similarity=0.031 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPN---------VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---- 71 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---- 71 (470)
......+..++..|++++|...+..+....+. .......++.++...|++++|...+++++...|..
T Consensus 410 ~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (903)
T PRK04841 410 RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS 489 (903)
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH
Confidence 34456788888999999999999988654221 23455667888899999999999999999864442
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214 72 -SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA 150 (470)
Q Consensus 72 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 150 (470)
..+...+|.++...|++++|...+.+++............ .. .....+..++..|+++.|...+.+++.....
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~-~~-----~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA-LW-----SLLQQSEILFAQGFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH-HH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 2356778899999999999999999998764432221111 11 1234456678899999999999998876221
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-----ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC
Q psy16214 151 --------SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ-----NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP 217 (470)
Q Consensus 151 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 217 (470)
....+..+|.++...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.+
T Consensus 564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 1234557889999999999999999998775332 244566789999999999999999999977543
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16214 218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL 297 (470)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (470)
............. ......+...|+.+.|...+.......+.........+..++.++...|++++|+..+++++
T Consensus 644 ~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 644 NGRYHSDWIANAD-----KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred cccccHhHhhHHH-----HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3211000000000 00134455678999999998776653322221122335678999999999999999999998
Q ss_pred HhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 298 EKD------PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 298 ~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
... +....++..+|.++...|+.++|...+.+++++...
T Consensus 719 ~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 719 ENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 862 223568889999999999999999999999998865
No 136
>KOG4340|consensus
Probab=99.58 E-value=2.8e-12 Score=108.49 Aligned_cols=297 Identities=13% Similarity=0.143 Sum_probs=226.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214 13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR 92 (470)
Q Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 92 (470)
.+.+..+|..||+++..-.+.+|.+-..+..+|.||+...+|..|..+|++.-.+.|......+..|..+++.+.+..|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy16214 93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQ 172 (470)
Q Consensus 93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~ 172 (470)
.+...... ++....... ..+.| ..+..+++..+...+++.-. .+......+.|.+.++.|+++.|+
T Consensus 99 rV~~~~~D----~~~L~~~~l-------qLqaA-IkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 99 RVAFLLLD----NPALHSRVL-------QLQAA-IKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHhcC----CHHHHHHHH-------HHHHH-HhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHH
Confidence 98877644 233322211 12223 34555666666655544321 256678888999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh----hCCChH--------HHH-----HHHHHHHHHHHH
Q psy16214 173 EIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK----LAPDHA--------KAK-----ETYKRAKLLKAK 235 (470)
Q Consensus 173 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----~~p~~~--------~~~-----~~~~~~~~~~~~ 235 (470)
+-|+.+++..--++-.-++++.++++.++++.|+++....++ ..|+.. ++. ..+.....+...
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 999999999988999999999999999999999998877665 444321 111 122233345555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcccC-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARN-ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCF 314 (470)
Q Consensus 236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 314 (470)
.-++.++++.++++.|.+.+.. +.|.. .+..+..+.+++..-. .+++.+...-+.-.+.++|--.+++.++-.+|
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLY 320 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5668899999999999877654 33332 1223456777776543 46677888888888999998788898998888
Q ss_pred HHhCCHHHHHHHH
Q psy16214 315 HALGQYKECVIDA 327 (470)
Q Consensus 315 ~~~g~~~~A~~~~ 327 (470)
.+..-++-|...+
T Consensus 321 CKNeyf~lAADvL 333 (459)
T KOG4340|consen 321 CKNEYFDLAADVL 333 (459)
T ss_pred hhhHHHhHHHHHH
Confidence 8888777776544
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.58 E-value=3.3e-13 Score=134.34 Aligned_cols=192 Identities=12% Similarity=-0.020 Sum_probs=144.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----------
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS---------- 72 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------- 72 (470)
+.+++..+...+...+++++|+..++.+++.+|+...+++.+|.++.+.+++.+|... .++..-+.+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999998887766 6666655544
Q ss_pred ---------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh--------cCCHH
Q psy16214 73 ---------KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE--------ANDYR 135 (470)
Q Consensus 73 ---------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~ 135 (470)
.+++.+|.||-++|+.++|...|+++++++|+|+.+...++..+... +++.|..++. .++|.
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~ 186 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYV 186 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcch
Confidence 89999999999999999999999999999999999999999987776 6666655533 35666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHH--------HH------------HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214 136 TAMFYLDRAMDQGVASKTYKLM--------KA------------ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC 195 (470)
Q Consensus 136 ~A~~~~~~~l~~~p~~~~~~~~--------~a------------~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 195 (470)
.+..++.+.+..+|.+...+.. ++ .+|...++|++++.+++.+++.+|.+..+...++.+
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~ 266 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF 266 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 6666666666666665543211 11 334444445555555555555555554444444444
Q ss_pred Hh
Q psy16214 196 LY 197 (470)
Q Consensus 196 ~~ 197 (470)
|.
T Consensus 267 y~ 268 (906)
T PRK14720 267 YK 268 (906)
T ss_pred HH
Confidence 43
No 138
>PHA03102 Small T antigen; Reviewed
Probab=99.58 E-value=4.7e-15 Score=115.44 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=72.0
Q ss_pred cccchhhhccCCCCC--CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcC
Q psy16214 354 EVKDYYKILGVTKNA--SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIME 431 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~--~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~ 431 (470)
+.++++.+||++.++ +..+|+++||++++++|||++.+ +++|+.|++||++|+|+.+|..||..+....
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~---------~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD---------EEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch---------hHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 346789999999999 99999999999999999999754 4589999999999999999999999765543
Q ss_pred CCCCCCCCccchhHHHHHHHhcCCC
Q psy16214 432 DSGMGGHAGANLFEQHMFQTYFDPG 456 (470)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (470)
.++. ..| +..|.+.||++
T Consensus 74 ~~~~--~~~-----~~~f~~~fg~~ 91 (153)
T PHA03102 74 SEEE--DVP-----SGYVGATFGDR 91 (153)
T ss_pred cccc--ccH-----HHHhhhhcCCc
Confidence 2222 237 78888878654
No 139
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=6.9e-11 Score=104.38 Aligned_cols=279 Identities=15% Similarity=0.086 Sum_probs=211.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy16214 41 YGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120 (470)
Q Consensus 41 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 120 (470)
..+-|..-+..|+|.+|.....++-+..+...-++..-+.+-.+.|+++.|-.++.++-+..+++....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v----------- 155 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAV----------- 155 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHH-----------
Confidence 344466667789999999999999888888888888889999999999999999999999865554322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH-H--HHH---HHH
Q psy16214 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD-A--VFV---RGL 194 (470)
Q Consensus 121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~--~~~---la~ 194 (470)
....+...+..++++.|...+.++++..|.++.++.....+|...|+|.+...++.++-+..--+.+ . +-. .|.
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 2555667889999999999999999999999999999999999999999999999988776543322 1 111 111
Q ss_pred HHh--ccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHH
Q psy16214 195 CLY--YDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKL 272 (470)
Q Consensus 195 ~~~--~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 272 (470)
+-. ..+..+.=..+++..-..-..++.....+ +.-+...|+.++|.+....+++..-+. .+
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~------------a~~li~l~~~~~A~~~i~~~Lk~~~D~-----~L 298 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAY------------AERLIRLGDHDEAQEIIEDALKRQWDP-----RL 298 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHhccCh-----hH
Confidence 111 11112221223332222222334444444 888899999999999999999876552 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q psy16214 273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRL 349 (470)
Q Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~ 349 (470)
....+ ...-++...=++..++.++..|+++..+..+|..+.+.+.|.+|..+++.+++..|+......+..+...
T Consensus 299 ~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 299 CRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQ 373 (400)
T ss_pred HHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 22222 3467888999999999999999999999999999999999999999999999999997777777555333
No 140
>KOG1128|consensus
Probab=99.57 E-value=1.4e-12 Score=122.93 Aligned_cols=221 Identities=19% Similarity=0.142 Sum_probs=171.4
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
.....-..++..+...|-...|+..|++. ..|-....||...|+..+|.....+-++ .|+++..|..+|.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 34556678899999999999999999875 5566789999999999999999999998 77888888888888
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214 116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC 195 (470)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 195 (470)
......++.|..+.+ ..+..+...+|......++|+++.+.++..++++|-....|+.+|.+
T Consensus 467 ~~d~s~yEkawElsn------------------~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ 528 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSN------------------YISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCA 528 (777)
T ss_pred ccChHHHHHHHHHhh------------------hhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHH
Confidence 666555555544432 11223445556666667788888888888888888888888888888
Q ss_pred HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHH
Q psy16214 196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN 275 (470)
Q Consensus 196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 275 (470)
..+.++++.|..+|..++.++|++..+|.++ +..|...++-.+|...+.+|++.+-.+. .+|.|
T Consensus 529 ALqlek~q~av~aF~rcvtL~Pd~~eaWnNl------------s~ayi~~~~k~ra~~~l~EAlKcn~~~w----~iWEN 592 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTLEPDNAEAWNNL------------STAYIRLKKKKRAFRKLKEALKCNYQHW----QIWEN 592 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCCchhhhhhh------------hHHHHHHhhhHHHHHHHHHHhhcCCCCC----eeeec
Confidence 8888888888888888888888888888877 7778888888888888888887776544 34777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 276 RATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 276 la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
.-.+....|.+++|++.|.+.+.+
T Consensus 593 ymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 593 YMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHh
Confidence 777777888888888888877765
No 141
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.57 E-value=8.2e-13 Score=110.33 Aligned_cols=183 Identities=15% Similarity=0.075 Sum_probs=166.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q psy16214 133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL 212 (470)
Q Consensus 133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 212 (470)
+...+...+-.....+|.+..+ ..++..+...|+-+.+.....++...+|.+...+..+|...+..|++..|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344666667778889999999 999999999999999999999999999999999988999999999999999999999
Q ss_pred HhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHH
Q psy16214 213 LKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIAD 292 (470)
Q Consensus 213 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (470)
....|++...+..+ |.+|.+.|++++|...|.+++++.|.++ .+..|+|..+.-.|+++.|..+
T Consensus 127 ~~l~p~d~~~~~~l------------gaaldq~Gr~~~Ar~ay~qAl~L~~~~p----~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 127 ARLAPTDWEAWNLL------------GAALDQLGRFDEARRAYRQALELAPNEP----SIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred hccCCCChhhhhHH------------HHHHHHccChhHHHHHHHHHHHhccCCc----hhhhhHHHHHHHcCCHHHHHHH
Confidence 99999999999998 9999999999999999999999999955 5599999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
+..+...-+.+..+..+++.+....|++++|.....+-+.
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 9999999888999999999999999999999877655443
No 142
>KOG3060|consensus
Probab=99.57 E-value=1.4e-11 Score=101.96 Aligned_cols=199 Identities=17% Similarity=0.083 Sum_probs=171.0
Q ss_pred hcCCHHHHHHHHHHHhhcC------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q psy16214 16 KLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP 89 (470)
Q Consensus 16 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 89 (470)
...+.++-+++....+... |+....+-....+.+..|+.+-|..++++.....|++.......|..+...|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 3456777777777776543 3445566677888889999999999999998888999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy16214 90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ 169 (470)
Q Consensus 90 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~ 169 (470)
+|+++|+..++-+|+|..++..... ..-.+|+.-+|++.+...++..+.+.++|..++++|...|+|.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlA------------ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLA------------ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHH------------HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence 9999999999999999887642222 2445678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHhccC---ChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 170 EAQEIANSILATDKQNPDAVFVRGLCLYYDD---KMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 170 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
+|.-++++++-..|.++..+..+|.+++-.| +..-|.++|.++++++|.+..++..+
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 9999999999999999999999999998776 56789999999999999776665544
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.56 E-value=2.1e-13 Score=108.83 Aligned_cols=126 Identities=20% Similarity=0.273 Sum_probs=112.8
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCH
Q psy16214 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY 286 (470)
Q Consensus 207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~ 286 (470)
..+++++..+|++......+ |..++..|++++|+..+++++..+|. ...++..+|.++..+|++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~~~~ 67 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYAL------------AYNLYQQGRYDEALKLFQLLAAYDPY----NSRYWLGLAACCQMLKEY 67 (135)
T ss_pred hhHHHHHcCChhhHHHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHH
Confidence 46889999999998887777 99999999999999999999999998 456799999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH
Q psy16214 287 NEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKR 348 (470)
Q Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~ 348 (470)
++|+.++++++..+|+++..++.+|.++...|++++|+..++++++++|+ ........++..
T Consensus 68 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 68 EEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 333444444433
No 144
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=8.7e-15 Score=135.48 Aligned_cols=93 Identities=39% Similarity=0.712 Sum_probs=71.2
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cCCC-
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-MEDS- 433 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~~~- 433 (470)
.+||++||+...++.++|++|||+++++||||++++ ..++++|+.|++||++|+||.+|+.||..++. ...+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~ 76 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE------PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAA 76 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCC
Confidence 589999999999999999999999999999999865 23678999999999999999999999985432 1111
Q ss_pred CCCCCCccchhHHHHHHHhcCC
Q psy16214 434 GMGGHAGANLFEQHMFQTYFDP 455 (470)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~ 455 (470)
+.+++.+++.| +++|..||++
T Consensus 77 ~~~~~~~~~~~-~d~f~~~fg~ 97 (374)
T PRK14293 77 GFPDMGDMGGF-ADIFETFFSG 97 (374)
T ss_pred CcCCcccccch-HHHHHHHhcc
Confidence 11111111112 5788888863
No 145
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.56 E-value=7e-15 Score=143.24 Aligned_cols=79 Identities=30% Similarity=0.337 Sum_probs=66.9
Q ss_pred ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCC
Q psy16214 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSG 434 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~ 434 (470)
..+||.+||+.++++..+|++|||++|++||||++++. .+..+|+.|++||+|||||.+|+.||..+.. +..+
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~------~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~-Gl~~ 644 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN------EGFHKFKKINEAYQILGDIDKKKMYNKFGYD-GIKG 644 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHhCCHHHHHHHhhcccc-ccCC
Confidence 46899999999999999999999999999999998762 3677999999999999999999999995443 1223
Q ss_pred CCCCCc
Q psy16214 435 MGGHAG 440 (470)
Q Consensus 435 ~~~~~~ 440 (470)
++-.||
T Consensus 645 ~~~iDP 650 (1136)
T PTZ00341 645 VNFIHP 650 (1136)
T ss_pred CCccCH
Confidence 344688
No 146
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=1.7e-12 Score=108.40 Aligned_cols=182 Identities=15% Similarity=0.026 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214 19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL 98 (470)
Q Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 98 (470)
+-..+...+-.....+|.+..+ .+++..+...|+-+.++....++...+|.+...+..+|......|++..|+..+.++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344666666777889999888 999999999999999999999999999999999888999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214 99 QELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSI 178 (470)
Q Consensus 99 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 178 (470)
..+.|++..+|..++.+ +.+.|+++.|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+
T Consensus 127 ~~l~p~d~~~~~~lgaa------------ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 127 ARLAPTDWEAWNLLGAA------------LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred hccCCCChhhhhHHHHH------------HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999777776 677788899999999999999999999999999999999999999999999
Q ss_pred hhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy16214 179 LATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLL 213 (470)
Q Consensus 179 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 213 (470)
....+.+..+..+++.+....|++++|.....+-+
T Consensus 195 ~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 195 YLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 99888899999999999999999999988765543
No 147
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.55 E-value=1.1e-12 Score=129.98 Aligned_cols=154 Identities=11% Similarity=0.027 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC
Q psy16214 137 AMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA 216 (470)
Q Consensus 137 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 216 (470)
++..+.......|.++.++.++|.+....|++++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33344444556777778888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214 217 PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296 (470)
Q Consensus 217 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (470)
|++......+ |.++.+.|++++|+.+|++++...|+ ...++..+|.++..+|+.++|...|+++
T Consensus 151 p~~~~~~~~~------------a~~l~~~g~~~~A~~~y~~~~~~~p~----~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 151 SSSAREILLE------------AKSWDEIGQSEQADACFERLSRQHPE----FENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred CCCHHHHHHH------------HHHHHHhcchHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888777777 88888888888888888888876666 4566788888888888888888888888
Q ss_pred HHhCCCCHHH
Q psy16214 297 LEKDPNYLKA 306 (470)
Q Consensus 297 l~~~p~~~~~ 306 (470)
++...+-...
T Consensus 215 ~~~~~~~~~~ 224 (694)
T PRK15179 215 LDAIGDGARK 224 (694)
T ss_pred HHhhCcchHH
Confidence 8776554444
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.54 E-value=3.1e-13 Score=105.44 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=99.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.-+.++..|..++..|++++|...|+.+...+|.++..|+++|.|+..+|+|.+|+..|.+++.++|+++.+++++|.|+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPA 107 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~ 107 (470)
+..|+.+.|.+.|+.++.....++.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccChh
Confidence 9999999999999999997744443
No 149
>KOG0691|consensus
Probab=99.54 E-value=9e-15 Score=126.84 Aligned_cols=91 Identities=35% Similarity=0.630 Sum_probs=76.0
Q ss_pred ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCC
Q psy16214 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSG 434 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~ 434 (470)
..+||.+||+..++++.+|+++||..+++|||||+++++ .+.++|..+.+||+||+|+++|..||.-......+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP-----~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~ 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP-----QAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence 468999999999999999999999999999999999843 388999999999999999999999998655433222
Q ss_pred CCCCCccchhHHHHHHHhcCCC
Q psy16214 435 MGGHAGANLFEQHMFQTYFDPG 456 (470)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~ 456 (470)
+-.|+ .++|++-|++.
T Consensus 79 -~~~d~-----~~~~r~~f~~d 94 (296)
T KOG0691|consen 79 -GREDQ-----ADGFRKKFGSD 94 (296)
T ss_pred -hhhhH-----HHHHHHHhhhh
Confidence 33577 77777777643
No 150
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=2.4e-14 Score=133.28 Aligned_cols=68 Identities=56% Similarity=0.926 Sum_probs=62.0
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
.+||++||+...++.+||++|||+++++||||+++.+ .+++++|++|++||++|+|+++|+.||..+.
T Consensus 5 ~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 5 RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-----KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 6899999999999999999999999999999998752 3578899999999999999999999998443
No 151
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.53 E-value=2.1e-14 Score=129.22 Aligned_cols=65 Identities=45% Similarity=0.691 Sum_probs=60.4
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRG 426 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~ 426 (470)
++||++||+...++.++|+++||+++++||||++.+ ..++++|++|++||++|+|+.+|+.||.-
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~------~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~ 68 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE------PDAEARFKEVAEAWEVLSDEQRRAEYDQL 68 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 689999999999999999999999999999999754 25788999999999999999999999973
No 152
>KOG1128|consensus
Probab=99.52 E-value=9.5e-12 Score=117.52 Aligned_cols=220 Identities=14% Similarity=0.047 Sum_probs=190.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL 85 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 85 (470)
.-..+|..++..|-...|+..|++. ..|-....||...|+..+|.....+-++ .|.++..|..+|.+....
T Consensus 400 ~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh
Confidence 3457788999999999999999874 5677889999999999999999999998 677788888888887776
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy16214 86 GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL 165 (470)
Q Consensus 86 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 165 (470)
.-|++|.++.+.... .+. ...+...+..++|+++..+++..++++|-....|+.+|.+..+.
T Consensus 471 s~yEkawElsn~~sa------rA~------------r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 471 SLYEKAWELSNYISA------RAQ------------RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred HHHHHHHHHhhhhhH------HHH------------HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 666666666654322 111 22222345679999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16214 166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA 245 (470)
Q Consensus 166 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (470)
++++.|.+.|..++.+.|++.++|.+++.+|...++-.+|...++++++.+-++...|.++ -.+....
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENy------------mlvsvdv 600 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENY------------MLVSVDV 600 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeech------------hhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998 8888999
Q ss_pred CCHHHHHHHHHHHHhhccc
Q psy16214 246 GKNQEAFDIYTEALKIDAR 264 (470)
Q Consensus 246 ~~~~~A~~~~~~al~~~p~ 264 (470)
|.+++|++.|.+.+.+...
T Consensus 601 ge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred ccHHHHHHHHHHHHHhhhh
Confidence 9999999999998866443
No 153
>KOG0715|consensus
Probab=99.52 E-value=1.6e-14 Score=127.04 Aligned_cols=86 Identities=44% Similarity=0.634 Sum_probs=72.2
Q ss_pred chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCCCC
Q psy16214 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMG 436 (470)
Q Consensus 357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~~~ 436 (470)
++|++|||..+++..|||+||+++++++|||.+.+. .++++|++|.+|||+|+|++||+.||.-.-.. .+..
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~------~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~--~~~~ 115 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK------EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ--HGEF 115 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc------chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc--cccc
Confidence 899999999999999999999999999999999872 78999999999999999999999999755432 1222
Q ss_pred CCCccchhHHHHHHHhcCC
Q psy16214 437 GHAGANLFEQHMFQTYFDP 455 (470)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~ 455 (470)
+.+| .+.|..+|++
T Consensus 116 ~g~~-----~~~~~~~~~~ 129 (288)
T KOG0715|consen 116 GGNP-----FDVFLEFFGG 129 (288)
T ss_pred cCCc-----cchHHHhhcc
Confidence 3377 5666666655
No 154
>KOG0717|consensus
Probab=99.51 E-value=2.4e-14 Score=127.42 Aligned_cols=71 Identities=41% Similarity=0.729 Sum_probs=65.2
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
..+.||.+|||...+++.+|+++||++||+|||||+++. -+++...|+.|..||+|||||..|+-||.+..
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~----ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR----IEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc----HHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 346799999999999999999999999999999998763 45789999999999999999999999999876
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.51 E-value=1.7e-11 Score=106.78 Aligned_cols=180 Identities=14% Similarity=0.062 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHH---HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAY---YGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLI 76 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 76 (470)
+++.++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 57789999999999999999999999999999987544 4899999999999999999999999998877 56789
Q ss_pred HHHHHHHHcC---------------C---hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy16214 77 RQIKCNIALG---------------D---APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAM 138 (470)
Q Consensus 77 ~la~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 138 (470)
.+|.++..++ + ..+|+..|++.++..|+..-+......+......+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l---------------- 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL---------------- 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH----------------
Confidence 9998875554 1 24688999999999998765432222221111000
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhccCChHHHHHHHHH
Q psy16214 139 FYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGLCLYYDDKMDLAVNHFQL 211 (470)
Q Consensus 139 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 211 (470)
..--+..|..|.+.|.|.-|+.-++.+++..|+. .+++..++.+|..+|..++|......
T Consensus 175 -------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 175 -------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred -------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1112346677777777777777777777777765 45677777777777777777766543
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.51 E-value=6.1e-13 Score=123.13 Aligned_cols=113 Identities=27% Similarity=0.435 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+..+...|..++..|+|++|+.+|++++..+|+++.+++++|.++..+|++++|+..+++++.++|.++.+++.+|.++.
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALE 116 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 116 (470)
.+|++++|+..|+++++++|+++.+...+..+.
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999877766663
No 157
>KOG4648|consensus
Probab=99.50 E-value=1.2e-14 Score=124.87 Aligned_cols=220 Identities=20% Similarity=0.218 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
..+.+.|+.||++|.|++||.+|.+++..+|.++..+.++|.+|+++.+|..|...|..++.++..+..+|.+.+.+-..
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-----------------------HHHHHHHhcCCHHHHHHHH
Q psy16214 85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF-----------------------EGASKAFEANDYRTAMFYL 141 (470)
Q Consensus 85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~-----------------------~~a~~~~~~~~~~~A~~~~ 141 (470)
+|...+|.+.++.++.+.|++.+....++.+......- ..+...+..+.++.++..+
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~ 257 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDV 257 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEe
Confidence 99999999999999999999888776666554321100 0000111223444444444
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHH
Q psy16214 142 DRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK 221 (470)
Q Consensus 142 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 221 (470)
.+-+.....+..+... +..+...-++++++....+.+...|.........+.+---.|...++...++.++.+.|.+..
T Consensus 258 ~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 258 VSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred eccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccccc
Confidence 4433333333333333 555666667777777777766666655444444444445556666666777777777776655
Q ss_pred HHHH
Q psy16214 222 AKET 225 (470)
Q Consensus 222 ~~~~ 225 (470)
....
T Consensus 337 ~~~~ 340 (536)
T KOG4648|consen 337 PKET 340 (536)
T ss_pred chhh
Confidence 4433
No 158
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.50 E-value=1.2e-12 Score=104.29 Aligned_cols=117 Identities=18% Similarity=0.140 Sum_probs=77.3
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy16214 25 KCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD 104 (470)
Q Consensus 25 ~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 104 (470)
+.|++++..+|++..+.+.+|.+++..|++++|+..+++++..+|.++.++..+|.++..+|++++|+..+++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35667777777777777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214 105 NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT 153 (470)
Q Consensus 105 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 153 (470)
++..+..++.+ +...|++++|+..++++++.+|++..
T Consensus 84 ~~~~~~~la~~------------~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAEC------------LLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHhccccch
Confidence 66554333333 33344444444444444444444433
No 159
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.50 E-value=4.7e-14 Score=95.44 Aligned_cols=64 Identities=47% Similarity=0.816 Sum_probs=59.5
Q ss_pred chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhcc
Q psy16214 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYD 424 (470)
Q Consensus 357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd 424 (470)
++|++||+...++.++|+++|+++++.+|||+....+ ..++..|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~----~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE----AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH----HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh----hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 4799999999999999999999999999999987643 568899999999999999999999998
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.48 E-value=2.5e-12 Score=100.48 Aligned_cols=94 Identities=11% Similarity=0.030 Sum_probs=90.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 318 (470)
|..++..|++++|...|+-+..++|. +...|++||.|+..+|++++|+..|.+++.++|+++.++.+.|.|++.+|
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~----~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAW----SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 99999999999999999999999999 45669999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q psy16214 319 QYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 319 ~~~~A~~~~~~a~~~~p~ 336 (470)
+.+.|.+.|+.++.....
T Consensus 118 ~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 118 NVCYAIKALKAVVRICGE 135 (157)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999998744
No 161
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.48 E-value=1.3e-11 Score=105.15 Aligned_cols=175 Identities=16% Similarity=0.110 Sum_probs=119.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHH
Q psy16214 1 ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKG 74 (470)
Q Consensus 1 e~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 74 (470)
+.+++.++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|++..|+..+++.++..|++ +.+
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 3568899999999999999999999999999998875 7789999999999999999999999999999987 468
Q ss_pred HHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16214 75 LIRQIKCNIALG-----------DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDR 143 (470)
Q Consensus 75 ~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 143 (470)
++.+|.++..+. ...+|+..|+..+...|+++-+......+......+
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l--------------------- 140 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL--------------------- 140 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH---------------------
Confidence 899999876653 345899999999999999876543222221111100
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh---HHHHHHHHHHhccCChHH
Q psy16214 144 AMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP---DAVFVRGLCLYYDDKMDL 204 (470)
Q Consensus 144 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~ 204 (470)
..--+..|..|.+.|.|..|+..++.+++..|+.+ +++..++.++..+|..+.
T Consensus 141 --------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 141 --------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp --------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred --------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 01123355556666666666666666666666553 345556666666666553
No 162
>KOG1130|consensus
Probab=99.44 E-value=2.6e-12 Score=113.26 Aligned_cols=286 Identities=19% Similarity=0.147 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISV------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP------RFS 72 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~ 72 (470)
..|..+|++|+..++|++|+++-..=|.+ .-..+..--++|.++-.+|.|++|+.++.+-+.+.. ...
T Consensus 56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~ 135 (639)
T KOG1130|consen 56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLES 135 (639)
T ss_pred HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh
Confidence 35788999999999999999876544432 122356677899999999999999999988776532 236
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---
Q psy16214 73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV--- 149 (470)
Q Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--- 149 (470)
.+++++|.+|...|+.-.-..-- +....+.++.. .++.|+++|..-+++..
T Consensus 136 RAlYNlgnvYhakGk~~g~~~pe----e~g~f~~ev~~----------------------al~~Av~fy~eNL~l~~~lg 189 (639)
T KOG1130|consen 136 RALYNLGNVYHAKGKCTGLEAPE----EKGAFNAEVTS----------------------ALENAVKFYMENLELSEKLG 189 (639)
T ss_pred HHHhhhhhhhhhcccccCCCChh----hcccccHHHHH----------------------HHHHHHHHHHHHHHHHHHhh
Confidence 78999999999887632110000 00001111110 11122222222222211
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH
Q psy16214 150 ---ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN------PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220 (470)
Q Consensus 150 ---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 220 (470)
....++-++|..|+-+|+|+.|+..-+.-+.+.... -.++.++|.++...|+++.|+++|+..+.+.-.
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie-- 267 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE-- 267 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH--
Confidence 122456678888999999999998887766654332 357889999999999999999999988764321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16214 221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLALE 298 (470)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (470)
.-.+....+.-+..|+.|.-..++++||.++.+-+.+... +..-...+++.+|.++..+|..++|+.+.++.++
T Consensus 268 ----lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 268 ----LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred ----hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1122223333444599999999999999999987765432 2222468899999999999999999999888876
Q ss_pred h-----CCC-CHHHHHHHHHHHHHhCCHHH
Q psy16214 299 K-----DPN-YLKALSRRCKCFHALGQYKE 322 (470)
Q Consensus 299 ~-----~p~-~~~~~~~la~~~~~~g~~~~ 322 (470)
+ +|. ...+..++...-..+|..+.
T Consensus 344 ~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 344 SSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 5 222 35566777777777776554
No 163
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.43 E-value=8.7e-11 Score=106.60 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCCh
Q psy16214 123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKM 202 (470)
Q Consensus 123 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 202 (470)
..|+..+..++++.|+..++.++...|+++.++...+.+++..++..+|++.+++++.+.|+.+..++++|.+++..|++
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence 33444555555555555555555555555555556666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 203 DLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 203 ~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
.+|+..++..+..+|+++..|..+
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~L 414 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLL 414 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHH
Confidence 666666666666666666666655
No 164
>KOG0716|consensus
Probab=99.43 E-value=1.8e-13 Score=113.82 Aligned_cols=69 Identities=51% Similarity=0.779 Sum_probs=62.9
Q ss_pred ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
+-++|.+||+.++++.++|||+||++++++|||++.+. .++..+|++|+.||.+|+|+.||..||+-+.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~-----P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN-----PEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC-----chhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 45789999999999999999999999999999999884 3577889999999999999999999998644
No 165
>KOG4234|consensus
Probab=99.42 E-value=4.8e-12 Score=100.69 Aligned_cols=107 Identities=38% Similarity=0.559 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy16214 230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI-NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALS 308 (470)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 308 (470)
......+..|+-++..|+|++|...|..||.+.|.-+ ...+.+|.++|.++++++.++.|+..|.++|+++|.+..++.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 3445556679999999999999999999999998744 335788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 309 RRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 309 ~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++|.+|.++..+++|+..|+++++++|+
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999997
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.42 E-value=4.7e-10 Score=100.93 Aligned_cols=174 Identities=17% Similarity=0.234 Sum_probs=113.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc-CChHHHH
Q psy16214 128 AFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-DKMDLAV 206 (470)
Q Consensus 128 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~ 206 (470)
.+...++++|+.++++++ .+|...|++..|..+ +..+|.+|... |++++|+
T Consensus 84 ~~k~~~~~~Ai~~~~~A~--------------~~y~~~G~~~~aA~~--------------~~~lA~~ye~~~~d~e~Ai 135 (282)
T PF14938_consen 84 CYKKGDPDEAIECYEKAI--------------EIYREAGRFSQAAKC--------------LKELAEIYEEQLGDYEKAI 135 (282)
T ss_dssp HHHHTTHHHHHHHHHHHH--------------HHHHHCT-HHHHHHH--------------HHHHHHHHCCTT--HHHHH
T ss_pred HHHhhCHHHHHHHHHHHH--------------HHHHhcCcHHHHHHH--------------HHHHHHHHHHHcCCHHHHH
Confidence 444456666666666554 345666766666544 45567788888 8999999
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc---hHHHHHHHHHHHHHc
Q psy16214 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI---NSKLLHNRATVLFKM 283 (470)
Q Consensus 207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~la~~~~~~ 283 (470)
.+|++++.+.......... .......+.++...++|++|++.|++.....-+++.. ....+...+.|++..
T Consensus 136 ~~Y~~A~~~y~~e~~~~~a------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~ 209 (282)
T PF14938_consen 136 EYYQKAAELYEQEGSPHSA------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM 209 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHH------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCChhhH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence 9999998864322211111 1112233899999999999999999998754332211 224567788899999
Q ss_pred CCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH--HhCCHHHHHHHHHHHHhcCC
Q psy16214 284 GKYNEAIADCTLALEKDPNY-----LKALSRRCKCFH--ALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 284 g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~p 335 (470)
|++..|...+++....+|.. ......+-.++. ....+..|+..|.+..+++|
T Consensus 210 ~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 210 GDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp T-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 99999999999999998865 344555555554 35678899999998888875
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.42 E-value=2e-10 Score=100.10 Aligned_cols=172 Identities=14% Similarity=0.103 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh---HHHHHHHH
Q psy16214 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYK---LMKAECLAHLNRLQEAQEIANSILATDKQNP---DAVFVRGL 194 (470)
Q Consensus 121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~ 194 (470)
.+..|...+..|++++|+..|++++...|..+.+. +.+|.++...+++++|+..+++.++.+|+++ .+++.+|.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 46788889999999999999999999999987654 8899999999999999999999999999875 57888998
Q ss_pred HHhccC---------------C---hHHHHHHHHHHHhhCCChHHHHHHHHHHHHH-----HHHHHHHHHHHhcCCHHHH
Q psy16214 195 CLYYDD---------------K---MDLAVNHFQLLLKLAPDHAKAKETYKRAKLL-----KAKKEEGNEKFVAGKNQEA 251 (470)
Q Consensus 195 ~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A 251 (470)
++...+ | ..+|+..|+..++..|++..+.....++..+ ......|..|++.|.|..|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA 194 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAV 194 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 864443 1 2478899999999999987665544333222 2222335555666666666
Q ss_pred HHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy16214 252 FDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293 (470)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (470)
+.-++.+++..|+.+. ...++..+..+|..+|..++|....
T Consensus 195 ~~r~~~v~~~Yp~t~~-~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 195 VNRVEQMLRDYPDTQA-TRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHCCCCch-HHHHHHHHHHHHHHcCChHHHHHHH
Confidence 6666666655555443 3455555556666666555555444
No 168
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.40 E-value=7.2e-11 Score=107.15 Aligned_cols=153 Identities=26% Similarity=0.301 Sum_probs=135.5
Q ss_pred CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262 (470)
Q Consensus 183 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 262 (470)
|....+++..+..++..|++++|...++.++...|+++..+... +.+++..++..+|.+.+++++..+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~------------~~i~~~~nk~~~A~e~~~kal~l~ 370 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELA------------GDILLEANKAKEAIERLKKALALD 370 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcC
Confidence 67788999999999999999999999999999999999988888 999999999999999999999999
Q ss_pred ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHH
Q psy16214 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHN 341 (470)
Q Consensus 263 p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~ 341 (470)
|. ...++.++|.++.+.|++.+|+..++..+..+|+++..|..+|++|..+|+..+|...+-....+... .....
T Consensus 371 P~----~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 371 PN----SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAII 446 (484)
T ss_pred CC----ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHH
Confidence 98 45679999999999999999999999999999999999999999999999999999999888888876 55666
Q ss_pred HHHHHHHHhh
Q psy16214 342 FLEEAKRLLK 351 (470)
Q Consensus 342 ~l~~~~~~~~ 351 (470)
.+..+....+
T Consensus 447 ~l~~A~~~~~ 456 (484)
T COG4783 447 FLMRASQQVK 456 (484)
T ss_pred HHHHHHHhcc
Confidence 6666655543
No 169
>KOG0543|consensus
Probab=99.40 E-value=8.5e-12 Score=110.92 Aligned_cols=125 Identities=32% Similarity=0.398 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214 228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI-----------NINSKLLHNRATVLFKMGKYNEAIADCTLA 296 (470)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (470)
++.......+.|+.+++.|+|..|...|++++..-.... .....++.|++.|+.++++|.+|+..|+++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 344555566679999999999999999999986533211 113468999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhc
Q psy16214 297 LEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKR 352 (470)
Q Consensus 297 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~ 352 (470)
|.++|+|..+++++|.++..+|+++.|+..|+++++++|+ .++...|..+....+.
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 6666666666655543
No 170
>KOG4234|consensus
Probab=99.40 E-value=9.2e-12 Score=99.13 Aligned_cols=114 Identities=28% Similarity=0.462 Sum_probs=105.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIR 77 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (470)
.+..+...|+.+|..|+|++|...|..||...|.. ...|.++|.+++.++.++.|+..+.++|+++|.+..++.+
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R 173 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER 173 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence 46778999999999999999999999999999974 5688999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214 78 QIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116 (470)
Q Consensus 78 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 116 (470)
.|.+|..+..+++|++.|+++++.+|....+.....++-
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 999999999999999999999999999887766665553
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.39 E-value=1.2e-11 Score=114.58 Aligned_cols=113 Identities=27% Similarity=0.439 Sum_probs=104.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFH 315 (470)
Q Consensus 236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (470)
...|..++..|++++|+.+|++++..+|+ ...++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++.
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPN----NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 34599999999999999999999999999 45679999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhc
Q psy16214 316 ALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKR 352 (470)
Q Consensus 316 ~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~ 352 (470)
.+|++++|+..|+++++++|+ ..+...+..+...++.
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999998 7778888888777754
No 172
>KOG4340|consensus
Probab=99.38 E-value=5.3e-10 Score=94.91 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
..+..+|.+|+...+|..|..+|++.-...|......+..+.+++..+.+..|+.........+.-.....-.-+-+.++
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs 124 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS 124 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999999999999999999999999999999999987765543211112233333444445
Q ss_pred cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH 164 (470)
Q Consensus 85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 164 (470)
.+++..+....++.-.- +..... ...+-..++.|+++.|++-|+.+++...-.+.+-+++|.++++
T Consensus 125 e~Dl~g~rsLveQlp~e--n~Ad~~------------in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~ 190 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSE--NEADGQ------------INLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS 190 (459)
T ss_pred cccCcchHHHHHhccCC--Cccchh------------ccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh
Confidence 55555554444432110 112222 1222224555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHh
Q psy16214 165 LNRLQEAQEIANSIL 179 (470)
Q Consensus 165 ~~~~~~A~~~~~~~l 179 (470)
.+++..|+++..+++
T Consensus 191 ~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 191 SRQYASALKHISEII 205 (459)
T ss_pred hhhHHHHHHHHHHHH
Confidence 555555555555444
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.37 E-value=2e-10 Score=97.86 Aligned_cols=167 Identities=20% Similarity=0.231 Sum_probs=119.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh---HHHHHHHH
Q psy16214 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVAS---KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP---DAVFVRGL 194 (470)
Q Consensus 121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~ 194 (470)
.+..|...+..|+|.+|+..|++++...|.+ ..+.+.+|.++...|++++|+..+++.++..|+++ .+++.+|.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 4788888999999999999999999998876 47889999999999999999999999999999885 57888898
Q ss_pred HHhccC-----------ChHHHHHHHHHHHhhCCChHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 195 CLYYDD-----------KMDLAVNHFQLLLKLAPDHAKAKETYKRAKL-----LKAKKEEGNEKFVAGKNQEAFDIYTEA 258 (470)
Q Consensus 195 ~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a 258 (470)
+++... ...+|+..|+..+...|++..+.....++.. .......|..|++.|.+..|+..++.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 876542 3458999999999999998776554433322 222333466666666666666666666
Q ss_pred HhhcccCccchHHHHHHHHHHHHHcCCHHH
Q psy16214 259 LKIDARNININSKLLHNRATVLFKMGKYNE 288 (470)
Q Consensus 259 l~~~p~~~~~~~~~~~~la~~~~~~g~~~~ 288 (470)
++..|+.+. ...++..++.++.++|..+.
T Consensus 168 ~~~yp~t~~-~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 168 IENYPDTPA-AEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHSTTSHH-HHHHHHHHHHHHHHTT-HHH
T ss_pred HHHCCCCch-HHHHHHHHHHHHHHhCChHH
Confidence 666666544 24566666666666666553
No 174
>KOG0543|consensus
Probab=99.37 E-value=2.4e-11 Score=108.11 Aligned_cols=118 Identities=31% Similarity=0.431 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN---------------VAAYYGNRAACYMMLGMYTYALDDAKLAVSLD 68 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 68 (470)
+......|+.+++.|+|..|+..|++++..-+. -..++.+++.|+.++++|.+|+..+.++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 456788999999999999999999999875321 15688999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy16214 69 PRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN 121 (470)
Q Consensus 69 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 121 (470)
|++..++++.|.++..+|+++.|+..|++++++.|.|..+...+..+......
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888777554433
No 175
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.36 E-value=1.9e-11 Score=95.15 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLIR 77 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 77 (470)
++.++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..+++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5789999999999999999999999999999876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChHHH
Q psy16214 78 QIKCNIALGDAPTARSNLKALQELDPDNPAIA 109 (470)
Q Consensus 78 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 109 (470)
+|.++..+|++++|+..+.+++...|+++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999999987654
No 176
>KOG2047|consensus
Probab=99.34 E-value=1.2e-07 Score=89.02 Aligned_cols=311 Identities=10% Similarity=0.021 Sum_probs=195.9
Q ss_pred cCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------------------------CCC--
Q psy16214 17 LKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL------------------------DPR-- 70 (470)
Q Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------------~p~-- 70 (470)
.+-.+.++..|++-|+..|... ...-..+...+++++|.+.+...+.. +|+
T Consensus 151 ~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~ 227 (835)
T KOG2047|consen 151 HGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKV 227 (835)
T ss_pred CCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchh
Confidence 3445567777777777776653 33345566778888888877766543 222
Q ss_pred -------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHH--HHH---
Q psy16214 71 -------------------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPD---NPAIAQESKALETMAK--NFE--- 123 (470)
Q Consensus 71 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~--~~~--- 123 (470)
....|..||..|++.|.+++|...|++++..--. ...++...+......- ..+
T Consensus 228 ~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~ 307 (835)
T KOG2047|consen 228 QSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELAD 307 (835)
T ss_pred cccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1346788999999999999999999999874322 2222222221111000 000
Q ss_pred -------------HHHHH--------------------------------HhcCCHHHHHHHHHHHHHh-CCCC-----H
Q psy16214 124 -------------GASKA--------------------------------FEANDYRTAMFYLDRAMDQ-GVAS-----K 152 (470)
Q Consensus 124 -------------~a~~~--------------------------------~~~~~~~~A~~~~~~~l~~-~p~~-----~ 152 (470)
..... +..++..+-+..|..++.. +|.. .
T Consensus 308 ~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 308 EESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPG 387 (835)
T ss_pred hcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChh
Confidence 00000 1127788888888888765 5533 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH--------
Q psy16214 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQN----PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-------- 220 (470)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------- 220 (470)
..|...|..|...|+.+.|..+++++++..-.. ..+|...|..-+...+++.|+++++++...-....
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 678889999999999999999999998865332 56889999999999999999999999876432211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214 221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300 (470)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (470)
.+...+- +.+..+..-+......|-++.....|++.+.+.-- .+.+..|.|..+....-+++|.+.|++.+.+.
T Consensus 468 pvQ~rlh--rSlkiWs~y~DleEs~gtfestk~vYdriidLria----TPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 468 PVQARLH--RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA----TPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred cHHHHHH--HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 1111110 01111111244555566777777777777766555 34456777777777777788888888877775
Q ss_pred --CCCHHHHHHHHHH---HHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 301 --PNYLKALSRRCKC---FHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 301 --p~~~~~~~~la~~---~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
|.-.++|...-.. -+.--..+.|...|++|++..|.
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 3444444433222 22334567788888888887774
No 177
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.33 E-value=6e-12 Score=87.02 Aligned_cols=68 Identities=34% Similarity=0.502 Sum_probs=58.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-MYTYALDDAKLAVSLDP 69 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p 69 (470)
++++.|..+|..++..|+|++|+.+|+++++.+|+++.+++++|.++..+| ++.+|+..++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 357788888888888888888888888888888888888888888888888 68888888888888887
No 178
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=1.2e-08 Score=108.21 Aligned_cols=314 Identities=12% Similarity=-0.033 Sum_probs=211.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------CHHHHH
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAIS-VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR---------FSKGLI 76 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~ 76 (470)
+...|..+...|++..+...+..+-. ....++.....++.++...|++++|...+..+...-+. ......
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 44455666666776665555544310 11123445567788888999999999999888764221 133455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----
Q psy16214 77 RQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVAS----- 151 (470)
Q Consensus 77 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----- 151 (470)
.++.++...|++++|...+++++...+....... +.. ....+..+...|++++|...+.+++......
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~a-----~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~ 529 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSR--IVA-----TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY 529 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH--HHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH
Confidence 6788889999999999999999986554322111 111 1234455677899999999999998663321
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--------ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHH
Q psy16214 152 -KTYKLMKAECLAHLNRLQEAQEIANSILATDKQ--------NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA 222 (470)
Q Consensus 152 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 222 (470)
...+..++.++...|++++|...+.+++..... ....+..+|.++...|++++|...+.+++.........
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 235567899999999999999999998875221 12345678889999999999999999998764322110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 223 KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ---SKLLHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
.. .......+.++...|++++|...+.++..+.+...... ..........+...|+.+.|..++......
T Consensus 610 ~~-------~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 682 (903)
T PRK04841 610 QQ-------LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP 682 (903)
T ss_pred HH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence 00 01112238889999999999999999977644321100 111111234455688999999988776553
Q ss_pred CCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 300 DPNYL----KALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 300 ~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
.+... ..+..++.++...|++++|...+++++...
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 32222 225678999999999999999999999874
No 179
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.31 E-value=1.2e-10 Score=104.03 Aligned_cols=190 Identities=19% Similarity=0.179 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy16214 19 QYSKALKCYSEAISVC--PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK 96 (470)
Q Consensus 19 ~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (470)
+-+.++..++..+... +.++......|.++...|++++|+..+.+. .+.+.......+++.+++++.|.+.++
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444433222 234556667778888889999999888754 567888889999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy16214 97 ALQELDPDNPAIAQESKALETMAKNFEGASKAFEA--NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEI 174 (470)
Q Consensus 97 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~ 174 (470)
.+.+.+.+..-.... .|...+.. ..+.+|...|+.+....+.++.++..+|.+++.+|+|++|...
T Consensus 156 ~~~~~~eD~~l~qLa------------~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~ 223 (290)
T PF04733_consen 156 NMQQIDEDSILTQLA------------EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEEL 223 (290)
T ss_dssp HHHCCSCCHHHHHHH------------HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHhcCCcHHHHHHH------------HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 998887665443322 22223333 3699999999999888889999999999999999999999999
Q ss_pred HHHHhhcCCCChHHHHHHHHHHhccCCh-HHHHHHHHHHHhhCCChHHHHHH
Q psy16214 175 ANSILATDKQNPDAVFVRGLCLYYDDKM-DLAVNHFQLLLKLAPDHAKAKET 225 (470)
Q Consensus 175 ~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~ 225 (470)
+.+++..+|++++++.+++.+....|+. +.+.+++.++...+|+++.+...
T Consensus 224 L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 224 LEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999999999999998 56777888888899998876544
No 180
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.30 E-value=7.4e-12 Score=119.63 Aligned_cols=66 Identities=42% Similarity=0.793 Sum_probs=60.7
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE 427 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~ 427 (470)
++||++||+...++..+|+++||++++++|||++.. ..+..+|+.|++||++|+|+.+|+.||..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~------~eAeekFqeINEAYEVLSDP~KRa~YD~fG 67 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA------PDAASIFAEINEANDVLSNPKKRANYDKYG 67 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence 589999999999999999999999999999999875 346778999999999999999999999854
No 181
>KOG2047|consensus
Probab=99.28 E-value=3.9e-07 Score=85.74 Aligned_cols=303 Identities=11% Similarity=0.014 Sum_probs=218.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---hh-----HHHHHHHHHHHHcC-------------ChHHHHHHHHHH
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPN---VA-----AYYGNRAACYMMLG-------------MYTYALDDAKLA 64 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~-----~~~~~~a~~~~~~g-------------~~~~A~~~~~~a 64 (470)
.|..+|..|...|.|++|...|++++..--. .. -+.+.-..+...++ +.+-.+..|+..
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l 329 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL 329 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH
Confidence 5788999999999999999999999975321 11 11111111222222 123333444443
Q ss_pred ------------HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCh-----HHHHHHHHHHHHHHHHHHHH
Q psy16214 65 ------------VSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE-LDPDNP-----AIAQESKALETMAKNFEGAS 126 (470)
Q Consensus 65 ------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~-----~~~~~l~~~~~~~~~~~~a~ 126 (470)
+..+|++..-|.....++ .|+..+-+..|..++. .+|.-+ ..|..++.+
T Consensus 330 m~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl----------- 396 (835)
T KOG2047|consen 330 MNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL----------- 396 (835)
T ss_pred HhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHH-----------
Confidence 345788888887776655 6788888999988875 566543 344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC------------------
Q psy16214 127 KAFEANDYRTAMFYLDRAMDQGVAS----KTYKLMKAECLAHLNRLQEAQEIANSILATDKQ------------------ 184 (470)
Q Consensus 127 ~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------------------ 184 (470)
+-..|+.+.|...++++....-.. ..+|..-|..-+...+++.|+++++.+......
T Consensus 397 -Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 397 -YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred -HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 566788888999999998774322 578888999999999999999999998764222
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR 264 (470)
Q Consensus 185 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 264 (470)
+..+|...+......|-++.....|.+++.+.--.|....++ |..+....-++++.+.|++.+.+.+-
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny------------AmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY------------AMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH------------HHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 134677788888888999999999999999888888888888 88888888899999999999988643
Q ss_pred CccchHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 265 NININSKLLH---NRATVLFKMGKYNEAIADCTLALEKDPNY--LKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 265 ~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.. ...+|. .....-+.--..+.|...|++|++..|.. -..++..+..-..-|--..|+..|++|..--+.
T Consensus 544 p~--v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 544 PN--VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred cc--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence 22 233333 33333344457899999999999988743 335566777777889999999999998776554
No 182
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.28 E-value=1.3e-11 Score=82.39 Aligned_cols=59 Identities=61% Similarity=0.943 Sum_probs=53.8
Q ss_pred chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhh
Q psy16214 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTK 419 (470)
Q Consensus 357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~ 419 (470)
++|.+||+..+++.++|+++|+++++.+|||++... ...++..|..|++||++|+||.+
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~----~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD----KEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----hHHHHHHHHHHHHHHHHHcCCCC
Confidence 689999999999999999999999999999998753 46688899999999999999853
No 183
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=2.8e-11 Score=98.20 Aligned_cols=69 Identities=25% Similarity=0.497 Sum_probs=63.0
Q ss_pred chhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214 357 DYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR 425 (470)
Q Consensus 357 ~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~ 425 (470)
+||.+||++.. .+..+|+++|+++++++|||++.+.++..+..+...+..|++||++|+||.+|..|+-
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 68999999985 6778999999999999999999887777777788999999999999999999999974
No 184
>KOG1941|consensus
Probab=99.25 E-value=3.3e-09 Score=92.55 Aligned_cols=317 Identities=15% Similarity=0.120 Sum_probs=220.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCC--CHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSL----DPR--FSK 73 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~--~~~ 73 (470)
.+......|..++...++++|+..+.+.+..-.+. ...+-.+..+...+|.|++++...--.+.. +.. ..+
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999998765443 334555667788889988887765443332 222 246
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214 74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT 153 (470)
Q Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 153 (470)
++.++++.+..+-++.+++.+-+..+.+....+.- ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~-----------------------------------------~~gq 123 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ-----------------------------------------LGGQ 123 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc-----------------------------------------ccch
Confidence 78888888888888888888887777655443310 1112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH-HHHHHH
Q psy16214 154 YKLMKAECLAHLNRLQEAQEIANSILATDKQN------PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-KAKETY 226 (470)
Q Consensus 154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~ 226 (470)
....++.++..++.++++++.|+.+++...++ ..++..+|.++....|+++|+.+..++.++..... .-|..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~- 202 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL- 202 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH-
Confidence 34447788888888888999998888765443 24778899999999999999999988887543221 00110
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q psy16214 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID--ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN-- 302 (470)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 302 (470)
..........+..+..+|..-.|.++.+++.++. ..+..+.+.....+|.+|...|+.+.|..-|+.|......
T Consensus 203 --kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 203 --KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG 280 (518)
T ss_pred --HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence 0111223345888999999999999999998653 3444456788888999999999999999999999876322
Q ss_pred ----CHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHhhcccccchhhhccCCCCC
Q psy16214 303 ----YLKALSRRCKCFHALGQYKE-----CVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNA 368 (470)
Q Consensus 303 ----~~~~~~~la~~~~~~g~~~~-----A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 368 (470)
...++...++++....-..+ |++.-++++++..+....-...++...+ ...|+.+|+..+.
T Consensus 281 drmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrl-----a~iYrs~gl~d~~ 350 (518)
T KOG1941|consen 281 DRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRL-----ASIYRSKGLQDEL 350 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHH-----HHHHHhccchhHH
Confidence 25667777777776655554 8888888888765533333333333333 4456666655433
No 185
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.24 E-value=1.3e-10 Score=86.30 Aligned_cols=99 Identities=35% Similarity=0.451 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL 85 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 85 (470)
.++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCC
Q psy16214 86 GDAPTARSNLKALQELDPD 104 (470)
Q Consensus 86 g~~~~A~~~~~~~l~~~p~ 104 (470)
|+++.|...+.+++...|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988763
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.24 E-value=4.3e-11 Score=82.71 Aligned_cols=67 Identities=34% Similarity=0.487 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCC
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG-QYKECVIDAEKIYKMDN 335 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p 335 (470)
.+.+|..+|.++...|++++|+..|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35679999999999999999999999999999999999999999999999 79999999999999988
No 187
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.23 E-value=6.5e-11 Score=95.29 Aligned_cols=68 Identities=25% Similarity=0.457 Sum_probs=59.4
Q ss_pred cchhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214 356 KDYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR 425 (470)
Q Consensus 356 ~~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~ 425 (470)
.+||.+||++.. ++..+++++|+++++++|||+..+ +..+..+...+..|++||++|+||.+|+.|+-
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~--~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT--LQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 478999999986 678999999999999999999865 44455566789999999999999999999954
No 188
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.22 E-value=3.1e-11 Score=86.94 Aligned_cols=82 Identities=27% Similarity=0.415 Sum_probs=73.9
Q ss_pred hcCCHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH
Q psy16214 16 KLKQYSKALKCYSEAISVCPN--VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARS 93 (470)
Q Consensus 16 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 93 (470)
.+|+|++|+.+|++++..+|. +...++.+|.|++..|+|++|+..+++ ...+|.++...+.+|.|+..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 577888899999999999999999999 88899888999999999999999999999
Q ss_pred HHHHH
Q psy16214 94 NLKAL 98 (470)
Q Consensus 94 ~~~~~ 98 (470)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 189
>KOG4648|consensus
Probab=99.22 E-value=7.3e-12 Score=107.95 Aligned_cols=210 Identities=16% Similarity=0.058 Sum_probs=173.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC
Q psy16214 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK 201 (470)
Q Consensus 122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 201 (470)
-+.+..++.+|.|++|+.+|.+.+..+|.++..+.++|.+|++..++..|...+..++.++.....+|..++.+...+|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 56677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-----------------------HHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 202 MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA-----------------------KKEEGNEKFVAGKNQEAFDIYTEA 258 (470)
Q Consensus 202 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~A~~~~~~a 258 (470)
..+|.+.++.+|++.|++......+..+..... ....|..+...+.++.++.++..-
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~ 260 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSP 260 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeecc
Confidence 999999999999999998877666554422110 112256666667777777777665
Q ss_pred HhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 259 LKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 259 l~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+.....+. .+-.+ +..+.+..+++.++..+.+++..+|.........+.+-.-+|...++...++.++.+.|.
T Consensus 261 ~A~~~~~~----~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~ 333 (536)
T KOG4648|consen 261 RATIDDSN----QLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPA 333 (536)
T ss_pred ccccCccc----cCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccc
Confidence 55444422 22223 677788888999999999999999988888888888888888899999999999999987
No 190
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.22 E-value=3.9e-11 Score=78.47 Aligned_cols=55 Identities=58% Similarity=0.921 Sum_probs=50.7
Q ss_pred chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCC
Q psy16214 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416 (470)
Q Consensus 357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d 416 (470)
++|++||+...++.++|+++|+++++.||||+.... ..+...|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-----~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-----PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999999999998762 5678999999999999987
No 191
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.22 E-value=6.9e-10 Score=92.13 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214 36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES 112 (470)
Q Consensus 36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 112 (470)
..+.+++.+|.++...|++++|+..|+++++..|+. ..++..+|.++..+|++++|+..+.+++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345566667777777777777777777776665542 34666677777777777777777777777766666666555
Q ss_pred HHHHH
Q psy16214 113 KALET 117 (470)
Q Consensus 113 ~~~~~ 117 (470)
+.++.
T Consensus 113 g~~~~ 117 (172)
T PRK02603 113 AVIYH 117 (172)
T ss_pred HHHHH
Confidence 55543
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=99.22 E-value=3.1e-10 Score=89.17 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.-+..+..|..++..|++++|...|+-....+|.++..+..+|.|+..+++|++|+..|..+..++++++...+..|.|+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAI 108 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~ 108 (470)
+.+|+.+.|..+|..++. .|.+..+
T Consensus 116 l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred HHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 999999999999999998 4555443
No 193
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.21 E-value=7.1e-11 Score=85.04 Aligned_cols=83 Identities=34% Similarity=0.492 Sum_probs=74.4
Q ss_pred cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16214 245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV 324 (470)
Q Consensus 245 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 324 (470)
.|+++.|+..+++++...|.++ ....++.+|.|++.+|++++|+..+++ ...+|.++...+.+|.|+..+|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 6899999999999999999754 456788899999999999999999999 8889999999999999999999999999
Q ss_pred HHHHHH
Q psy16214 325 IDAEKI 330 (470)
Q Consensus 325 ~~~~~a 330 (470)
..++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
No 194
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.20 E-value=1e-10 Score=94.94 Aligned_cols=75 Identities=33% Similarity=0.522 Sum_probs=66.2
Q ss_pred ccchhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhcc---CCCCC
Q psy16214 355 VKDYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYD---RGEDI 429 (470)
Q Consensus 355 ~~~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd---~~~~~ 429 (470)
..+||.+||++.. .+..+|+++|+++++++|||++...++.++..+...+..|++||++|+||.+|..|+ .|.+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~~ 84 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDV 84 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCCC
Confidence 3689999999985 578899999999999999999987777777778888999999999999999999998 45554
No 195
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.20 E-value=5.3e-09 Score=94.12 Aligned_cols=195 Identities=17% Similarity=0.236 Sum_probs=131.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCC--C----hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q psy16214 158 KAECLAHLNRLQEAQEIANSILATDKQ--N----PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKL 231 (470)
Q Consensus 158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 231 (470)
.|.+|...+++++|...|.++....-. + ...+...+.++... ++++|+.++++++.+.-....... .
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~------a 113 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ------A 113 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH------H
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH------H
Confidence 566777778888888888777554321 1 23455666666555 999999999999875322211111 1
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q psy16214 232 LKAKKEEGNEKFVA-GKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY----- 303 (470)
Q Consensus 232 ~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 303 (470)
.....+.|.+|... +++++|+++|++|+..... .+.....++..+|.++..+|+|++|++.|+++....-++
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 11223349999998 9999999999999987432 222346788899999999999999999999998753221
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHHhhcccccchh
Q psy16214 304 --LKALSRRCKCFHALGQYKECVIDAEKIYKMDNS---RENHNFLEEAKRLLKRSEVKDYY 359 (470)
Q Consensus 304 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~l~~~~~~~~~~~~~~~y 359 (470)
...++..+.|++..|++..|...+++....+|+ ..-...+..+.......+...+-
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~ 254 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFT 254 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence 245677888999999999999999999999986 33344555555555555444443
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.7e-09 Score=93.27 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC---hHHHHHHH
Q psy16214 133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK---MDLAVNHF 209 (470)
Q Consensus 133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 209 (470)
..+..+.-++..+..+|++.+-|..+|.+|+.+|++..|...|.+++++.|++++.+..+|.+++...+ ..++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 355566667777788888888888888888888888888888888888888888888888887765543 45777888
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc
Q psy16214 210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN 267 (470)
Q Consensus 210 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 267 (470)
++++..+|++..+...+ |..++..|+|.+|+..++..+...|.+.+
T Consensus 217 ~~al~~D~~~iral~lL------------A~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLL------------AFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHH------------HHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 88888888888888887 88888888888888888888887776544
No 197
>KOG0721|consensus
Probab=99.19 E-value=5.2e-11 Score=95.77 Aligned_cols=73 Identities=32% Similarity=0.562 Sum_probs=66.2
Q ss_pred chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCC
Q psy16214 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSG 434 (470)
Q Consensus 357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~ 434 (470)
+-|++||++..+++.||||+||.+..++||||++.. ...++.|..|+.||..|+|++.|..|..-+.++++++
T Consensus 100 DPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~-----~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq~ 172 (230)
T KOG0721|consen 100 DPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE-----EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQA 172 (230)
T ss_pred CcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc-----chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCccc
Confidence 459999999999999999999999999999998762 4678899999999999999999999999888887654
No 198
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.18 E-value=1.4e-10 Score=78.96 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q psy16214 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS 72 (470)
Q Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 72 (470)
+.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35677777777777777777777777777777777777777777777777777777777777653
No 199
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.18 E-value=9.2e-10 Score=85.52 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=54.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY---LKALSRRCKCFH 315 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 315 (470)
|..+...|++++|+..|.+++...|+++. ...+++.+|.++...|++++|+..+++++..+|++ +.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 55555555555555555555555554332 13445555666666666666666666655555543 445555566666
Q ss_pred HhCCHHHHHHHHHHHHhcCCC
Q psy16214 316 ALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 316 ~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.+|++++|+..++++++..|+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcC
Confidence 666666666666666665555
No 200
>KOG3081|consensus
Probab=99.17 E-value=1.3e-07 Score=79.53 Aligned_cols=175 Identities=21% Similarity=0.165 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q psy16214 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL 232 (470)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 232 (470)
..+..-|.++...+++++|++..... .+.++...-..++.++.+.+-|.+.+++....+.+.......-
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~------ 177 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQ------ 177 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH------
Confidence 45556678899999999999988763 3456666677888999999999999999998876654322111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK 312 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 312 (470)
++ .......+++.+|.-+|++.-...|. .+.+....+.|++.+++|++|...++.++..++++++++.++..
T Consensus 178 -aw---v~la~ggek~qdAfyifeE~s~k~~~----T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 178 -AW---VKLATGGEKIQDAFYIFEELSEKTPP----TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred -HH---HHHhccchhhhhHHHHHHHHhcccCC----ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 00 12222345788999999998876555 35678999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHH-HHHHHHHhcCCChhHHHHHHHH
Q psy16214 313 CFHALGQYKECV-IDAEKIYKMDNSRENHNFLEEA 346 (470)
Q Consensus 313 ~~~~~g~~~~A~-~~~~~a~~~~p~~~~~~~l~~~ 346 (470)
+-...|...++. +.+.+....+|+......+.+.
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ek 284 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEK 284 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 999999876665 4556666777876655555433
No 201
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.17 E-value=4.9e-09 Score=84.22 Aligned_cols=126 Identities=23% Similarity=0.167 Sum_probs=104.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHH
Q psy16214 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVAS---KTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGL 194 (470)
Q Consensus 121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 194 (470)
.+..+...+..++...+...++.++..+|+. ..+.+.+|.++...|++++|+..|+.++...|+. +.+.+.++.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3555555667889999999999999999998 4677889999999999999999999999987655 457889999
Q ss_pred HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL 259 (470)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 259 (470)
+++..|++++|+..++.+ ...+-.+.+.... |.++...|++++|+..|++++
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~------------Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELL------------GDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHH------------HHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999763 2333334444444 999999999999999999875
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.16 E-value=1.4e-09 Score=95.43 Aligned_cols=106 Identities=10% Similarity=0.015 Sum_probs=97.0
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHH
Q psy16214 4 AEKHKEDGNTQ-YKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLI 76 (470)
Q Consensus 4 a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 76 (470)
...++..|..+ +..|+|++|+..|+..++.+|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 36788888887 66799999999999999999997 5899999999999999999999999999988874 78999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCChHHH
Q psy16214 77 RQIKCNIALGDAPTARSNLKALQELDPDNPAIA 109 (470)
Q Consensus 77 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 109 (470)
.+|.++..+|++++|...|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999999999999999987653
No 203
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=4e-09 Score=85.51 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.+..+++.|..|-..|-+.-|.--|++++.+.|..+.+++.+|..+...|+|+.|.+.|...++++|.+.-++.+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPA 107 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~ 107 (470)
+--|++.-|.+.+.+-.+.+|++|-
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChH
Confidence 7777777777777777776776653
No 204
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.15 E-value=6.4e-08 Score=81.75 Aligned_cols=189 Identities=16% Similarity=0.089 Sum_probs=134.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS---KGLI 76 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 76 (470)
.+..|+..|...++.|+|++|+..|+.+...+|.. ..+...++.++++.+++++|+..+++-+.+.|+++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 57889999999999999999999999999998875 67889999999999999999999999999998874 4677
Q ss_pred HHHHHHHHcC--------ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q psy16214 77 RQIKCNIALG--------DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG 148 (470)
Q Consensus 77 ~la~~~~~~g--------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 148 (470)
..|.++...= -..+|+..|+..+...|++.-+-.....+......
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~--------------------------- 165 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA--------------------------- 165 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH---------------------------
Confidence 7788766432 24578889999999999986543332222111110
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH
Q psy16214 149 VASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220 (470)
Q Consensus 149 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 220 (470)
-...-...|..|.+.|.+-.|+.-++.+++..|+. .+++..+..+|..+|-.++|.+.-.-+-...|++.
T Consensus 166 --LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 166 --LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred --HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 01122345666666777777777777766665554 34566666666777776666655544444444443
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.5e-09 Score=91.30 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=110.8
Q ss_pred ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHH
Q psy16214 201 KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVL 280 (470)
Q Consensus 201 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~ 280 (470)
+.+.-+.-++.-+..+|++...|..+ |.+|+..|++..|...|.+++++.|+++ .++..+|.++
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~L------------g~~ym~~~~~~~A~~AY~~A~rL~g~n~----~~~~g~aeaL 200 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLL------------GRAYMALGRASDALLAYRNALRLAGDNP----EILLGLAEAL 200 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHH------------HHHHHHhcchhHHHHHHHHHHHhCCCCH----HHHHHHHHHH
Confidence 46677888899999999999999999 9999999999999999999999999955 5588889888
Q ss_pred HHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCh
Q psy16214 281 FKMGK---YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSR 337 (470)
Q Consensus 281 ~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 337 (470)
+.+.+ ..++...+++++.++|+++.+.+.+|..+...|+|.+|+..++..++..|..
T Consensus 201 ~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 201 YYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 76653 6789999999999999999999999999999999999999999999999873
No 206
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.14 E-value=4e-09 Score=84.78 Aligned_cols=123 Identities=19% Similarity=0.150 Sum_probs=86.1
Q ss_pred ccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q psy16214 198 YDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRA 277 (470)
Q Consensus 198 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la 277 (470)
..++...+...++..+...|+++...... ...|.+++..|++++|+..|+.++...|+. .+...+...++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~---------l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAA---------LQLAKAAYEQGDYDEAKAALEKALANAPDP-ELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHH---------HHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-HHHHHHHHHHH
Confidence 46777777777777777777774332221 112777788888888888888887766443 33456777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16214 278 TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIY 331 (470)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 331 (470)
.++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888888888888888865 33334456677778888888888888888888764
No 207
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.13 E-value=8.6e-07 Score=78.03 Aligned_cols=49 Identities=24% Similarity=0.180 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214 52 GMYTYALDDAKLAVSLDPR--FSKGLIRQIKCNIALGDAPTARSNLKALQE 100 (470)
Q Consensus 52 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 100 (470)
+.+..+...+..++...+. ........+..+...+++..+...+...+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALE 87 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444555555555554444 244445555555555555555555555443
No 208
>PRK11906 transcriptional regulator; Provisional
Probab=99.13 E-value=7.2e-09 Score=94.94 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHh---hcCCchhHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCC
Q psy16214 7 HKEDGNTQYKLKQ---YSKALKCYSEAI---SVCPNVAAYYGNRAACYMML---------GMYTYALDDAKLAVSLDPRF 71 (470)
Q Consensus 7 ~~~~g~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~ 71 (470)
++..|...+..+. ...|+.+|.+++ .++|..+.+|..++.|++.. ....+|....+++++++|.+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 3455555544432 345566666666 66666666666666666543 12345555666666666666
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy16214 72 SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVAS 151 (470)
Q Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 151 (470)
+.++..+|.++...++++.|+..|++++.++|+...
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~-------------------------------------------- 373 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIAS-------------------------------------------- 373 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHH--------------------------------------------
Confidence 666666666666666666666666666655555554
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH-HhccCChHHHHHHHHHH
Q psy16214 152 KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC-LYYDDKMDLAVNHFQLL 212 (470)
Q Consensus 152 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~~ 212 (470)
+++..|.+....|+.++|++.++++++++|....+-...-.+ .+...-.+.|+..|-+-
T Consensus 374 --~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 374 --LYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 455555556666666666666666666666554433332222 34445556666665443
No 209
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.12 E-value=3.6e-09 Score=87.55 Aligned_cols=123 Identities=17% Similarity=0.204 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHHHhhCCChHH--HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHH
Q psy16214 201 KMDLAVNHFQLLLKLAPDHAK--AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRAT 278 (470)
Q Consensus 201 ~~~~A~~~~~~~l~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~ 278 (470)
.+..+...+...++..+.... .+..+ |.++...|++++|+..|++++.+.|+... .+.++.++|.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------g~~~~~~g~~~~A~~~~~~al~l~~~~~~-~~~~~~~lg~ 80 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRD------------GMSAQSEGEYAEALQNYYEAMRLEIDPYD-RSYILYNIGL 80 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhccccchh-hHHHHHHHHH
Confidence 355555555555554444432 23333 99999999999999999999988775432 3568999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HhCCHH-------HHHHHHHHHHhcCCC
Q psy16214 279 VLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFH-------ALGQYK-------ECVIDAEKIYKMDNS 336 (470)
Q Consensus 279 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~a~~~~p~ 336 (470)
++..+|++++|+..+++++.++|.....+..+|.++. .+|+++ +|+..|++++..+|.
T Consensus 81 ~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999999999998 777766 666666677777875
No 210
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.11 E-value=1.7e-09 Score=89.42 Aligned_cols=104 Identities=23% Similarity=0.147 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN---VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI 79 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 79 (470)
.+..++.+|..+...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|+..+++++.++|.....+..+|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4677899999999999999999999999988765 3468999999999999999999999999999999999999999
Q ss_pred HHHH-------HcCChH-------HHHHHHHHHHhcCCCCh
Q psy16214 80 KCNI-------ALGDAP-------TARSNLKALQELDPDNP 106 (470)
Q Consensus 80 ~~~~-------~~g~~~-------~A~~~~~~~l~~~p~~~ 106 (470)
.++. .+|+++ +|+.++++++..+|.+.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 8888 777766 55666666777777654
No 211
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.11 E-value=2.1e-10 Score=92.62 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=64.6
Q ss_pred ccchhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214 355 VKDYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR 425 (470)
Q Consensus 355 ~~~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~ 425 (470)
..+||.++|++.. .+..+|+++||++++++|||++...++.++..+...+..|++||++|+||.+|..|+-
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 3689999999986 5679999999999999999999887777788888999999999999999999999994
No 212
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.11 E-value=2.7e-09 Score=88.56 Aligned_cols=98 Identities=22% Similarity=0.330 Sum_probs=87.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL 317 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 317 (470)
.|..+...|++++|+.+|++++...|+.+. ...++.++|.++..+|++++|+..+++++...|+++.++..+|.++..+
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPND-RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 399999999999999999999998776432 3578999999999999999999999999999999999999999999998
Q ss_pred CC--------------HHHHHHHHHHHHhcCCC
Q psy16214 318 GQ--------------YKECVIDAEKIYKMDNS 336 (470)
Q Consensus 318 g~--------------~~~A~~~~~~a~~~~p~ 336 (470)
|+ +++|++++++++.++|+
T Consensus 120 g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 120 GEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred CChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 88 57778888888888875
No 213
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.11 E-value=6e-07 Score=79.03 Aligned_cols=225 Identities=25% Similarity=0.282 Sum_probs=150.2
Q ss_pred cCCHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214 17 LKQYSKALKCYSEAISVCPN--VAAYYGNRAACYMMLGMYTYALDDAKLAVS--LDPRFSKGLIRQIKCNIALGDAPTAR 92 (470)
Q Consensus 17 ~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 92 (470)
.+.+..+...+..++...+. ........+..+...+.+..+...+...+. ..+.....+...+.++...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46788888899988888876 378889999999999999999999999997 78888999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHH
Q psy16214 93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV---ASKTYKLMKAECLAHLNRLQ 169 (470)
Q Consensus 93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~~a~~~~~~~~~~ 169 (470)
..+..++...+.+.......... .+...++++.|+..+.+++...| .........+..+...++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALG-----------ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHH-----------HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHH
Confidence 99999999877763222111110 35556666666666666665554 23344444444455556666
Q ss_pred HHHHHHHHHhhcCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214 170 EAQEIANSILATDKQ-NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248 (470)
Q Consensus 170 ~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (470)
.|+..+.+++...+. ....+..++.++...++++.|+..+..++...|......... +..+...+.+
T Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 252 (291)
T COG0457 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL------------ALLLLELGRY 252 (291)
T ss_pred HHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhH------------HHHHHHcCCH
Confidence 666666666666665 455555666666666666666666666665555522222222 3333344445
Q ss_pred HHHHHHHHHHHhhccc
Q psy16214 249 QEAFDIYTEALKIDAR 264 (470)
Q Consensus 249 ~~A~~~~~~al~~~p~ 264 (470)
+++...+.+++...|.
T Consensus 253 ~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 253 EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 5555555555555543
No 214
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.10 E-value=3.7e-10 Score=76.86 Aligned_cols=65 Identities=25% Similarity=0.211 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q psy16214 42 GNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP 106 (470)
Q Consensus 42 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 106 (470)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999875
No 215
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=1.7e-08 Score=82.00 Aligned_cols=198 Identities=16% Similarity=0.097 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q psy16214 73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK 152 (470)
Q Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 152 (470)
..++..|..|-.+|-+.-|.-.|.+++.+.|+-+++...+|.. +...|+++.|.+.|+..++++|...
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Y------------l~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY------------LTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHH------------HHhcccchHHHHHhhhHhccCCcch
Confidence 3445555555556666666666666666666655555555444 3334555555555555566666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHH-HHHhhCCChHHHHHHHHHHHH
Q psy16214 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQ-LLLKLAPDHAKAKETYKRAKL 231 (470)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~l~~~p~~~~~~~~~~~~~~ 231 (470)
.+..++|..++.-|++.-|.+.+.+-.+.+|++|---..+-.. ...-++.+|...+. ++...+.+. ..|..
T Consensus 134 Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~-WG~~i------ 205 (297)
T COG4785 134 YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQ-WGWNI------ 205 (297)
T ss_pred HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhh-hhHHH------
Confidence 6666777777777777777777777777777776422222111 22334555555443 333333221 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214 232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI---NINSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (470)
+-+-.|+..+ ...++++..-..++. .....+++.+|..+...|+.++|...|+-++..+
T Consensus 206 ---------V~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 206 ---------VEFYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ---------HHHHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1111122211 112222222211111 1134677888888888888888888888877654
No 216
>KOG0722|consensus
Probab=99.10 E-value=6e-11 Score=97.27 Aligned_cols=67 Identities=42% Similarity=0.753 Sum_probs=60.8
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
.++|.+|||.++++.++|.+|||+++++||||++++.+ ..+.|+.|+.||++|.|.+.|..||=.-|
T Consensus 33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e------~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE------SKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch------hhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 68899999999999999999999999999999999832 33789999999999999999999996544
No 217
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.09 E-value=2.5e-09 Score=79.22 Aligned_cols=96 Identities=34% Similarity=0.523 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA 316 (470)
Q Consensus 237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 316 (470)
..|..+...|++++|+..++++++..|.+ ..++..+|.++...+++++|+..+++++...|.+..++..+|.++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDN----ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 34899999999999999999999999984 46799999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCC
Q psy16214 317 LGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 317 ~g~~~~A~~~~~~a~~~~p~ 336 (470)
.|++++|...+.++++..|.
T Consensus 81 ~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 81 LGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHhHHHHHHHHHHHHccCCC
Confidence 99999999999999998873
No 218
>PHA02624 large T antigen; Provisional
Probab=99.08 E-value=3e-10 Score=107.62 Aligned_cols=63 Identities=29% Similarity=0.460 Sum_probs=57.7
Q ss_pred cccccchhhhccCCCCC--CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhc
Q psy16214 352 RSEVKDYYKILGVTKNA--SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423 (470)
Q Consensus 352 ~~~~~~~y~~lg~~~~~--~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~y 423 (470)
..+..++|++||+..++ +..+|+++||++++++|||++.+ +++|++|++||++|+|+.++.+|
T Consensus 7 ree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd---------eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 7 REESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD---------EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred hHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc---------HHHHHHHHHHHHHHhcHHHhhhc
Confidence 34567899999999999 99999999999999999999654 56899999999999999999999
No 219
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.06 E-value=7.2e-09 Score=79.74 Aligned_cols=107 Identities=15% Similarity=0.108 Sum_probs=97.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS---KGL 75 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 75 (470)
..+..++..|...+..|+|++|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++.++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 467889999999999999999999999999998864 67899999999999999999999999999999874 588
Q ss_pred HHHHHHHHHcCC---------------hHHHHHHHHHHHhcCCCChHH
Q psy16214 76 IRQIKCNIALGD---------------APTARSNLKALQELDPDNPAI 108 (470)
Q Consensus 76 ~~la~~~~~~g~---------------~~~A~~~~~~~l~~~p~~~~~ 108 (470)
+..|.++..+.. ...|...|++++...|++.-+
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999999876 889999999999999998754
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.05 E-value=7.6e-09 Score=88.16 Aligned_cols=105 Identities=20% Similarity=0.152 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLIRQ 78 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 78 (470)
+.+|+.|..++..|+|..|...|...++..|++ +.+++.+|.+++.+|+++.|...|..+++..|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 458999999999999999999999999999986 7899999999999999999999999999987765 6889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChHHH
Q psy16214 79 IKCNIALGDAPTARSNLKALQELDPDNPAIA 109 (470)
Q Consensus 79 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 109 (470)
|.|...+|+.++|...|+++++..|+...+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999988764
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=99.05 E-value=6.7e-09 Score=81.73 Aligned_cols=91 Identities=14% Similarity=0.036 Sum_probs=86.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 318 (470)
|.-++..|++++|...|+-....+|.++ +.+..||.|+..+++|++|+..|..+..++++++...+..|.|++.+|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~----~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNP----DYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 8899999999999999999999999954 559999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q psy16214 319 QYKECVIDAEKIYKM 333 (470)
Q Consensus 319 ~~~~A~~~~~~a~~~ 333 (470)
+.++|..+|+.+++.
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999999983
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.04 E-value=3e-07 Score=77.81 Aligned_cols=171 Identities=15% Similarity=0.177 Sum_probs=120.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH---HHHHHHH
Q psy16214 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASK---TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD---AVFVRGL 194 (470)
Q Consensus 121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~ 194 (470)
.+..+...++.|+|++|+..|+.+....|..+ .+.+.++.++++.+++++|+...++-+.++|++++ +++..|.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 47788889999999999999999999987664 67888999999999999999999999999998865 6778888
Q ss_pred HHhccC-----C---hHHHHHHHHHHHhhCCChHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy16214 195 CLYYDD-----K---MDLAVNHFQLLLKLAPDHAKAKETYKRAKL-----LKAKKEEGNEKFVAGKNQEAFDIYTEALKI 261 (470)
Q Consensus 195 ~~~~~g-----~---~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 261 (470)
+++..= | ..+|+..++..+...|++.-+.....++.. .......|..|.+.|.+..|+..++.+++.
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 876532 2 347888899999999998655443322211 112222355566666666666666666655
Q ss_pred cccCccchHHHHHHHHHHHHHcCCHHHHHHH
Q psy16214 262 DARNININSKLLHNRATVLFKMGKYNEAIAD 292 (470)
Q Consensus 262 ~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (470)
.|+... ...++..+..+|..+|-.++|...
T Consensus 197 y~~t~~-~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 197 YPDTSA-VREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred cccccc-hHHHHHHHHHHHHHhCChHHHHHH
Confidence 444332 234555555556666655555443
No 223
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.04 E-value=1.6e-08 Score=97.72 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Q psy16214 88 APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ--GVASKTYKLMKAECLAHL 165 (470)
Q Consensus 88 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~ 165 (470)
...|+.+|+++++++|++..++..++.++.....+.. ....+...+.....+++.. .|..+.++..+|..+...
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~----~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP----LDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 4455555555555555555555544444322211110 0011234455555565553 777788898899999999
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHH
Q psy16214 166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA 222 (470)
Q Consensus 166 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 222 (470)
|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|.++..
T Consensus 434 g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999999 58899999999999999999999999999999998863
No 224
>KOG0714|consensus
Probab=99.04 E-value=4.7e-10 Score=103.20 Aligned_cols=69 Identities=57% Similarity=0.879 Sum_probs=62.2
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
.++|++|++...++..+|++||+++++.||||+++. . +..++.+|++++++|++|+|+.+|..||.-.+
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~---~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPS---P-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCC---c-hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 589999999999999999999999999999999665 2 44566699999999999999999999999776
No 225
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.2e-10 Score=99.24 Aligned_cols=69 Identities=55% Similarity=0.873 Sum_probs=63.0
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRG 426 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~ 426 (470)
...++|.+||+...++..+|+++||++++++|||+++.... .++++|+.|++||++|+|+.+|..||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~----~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK----VAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh----HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 34689999999999999999999999999999999987332 6889999999999999999999999983
No 226
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.03 E-value=3.4e-08 Score=95.43 Aligned_cols=87 Identities=9% Similarity=0.035 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhh--cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16214 248 NQEAFDIYTEALKI--DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVI 325 (470)
Q Consensus 248 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 325 (470)
...+.....+++.+ +|. .+.++..+|..+...|++++|...+++|+.++|+ ..+|..+|.++...|++++|++
T Consensus 400 l~~a~~~~~~a~al~~~~~----~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 400 LAALSTELDNIVALPELNV----LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred HHHHHHHHHHhhhcccCcC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 34455555565554 344 3456777888888888888888888888888884 7888888888888888888988
Q ss_pred HHHHHHhcCCChhH
Q psy16214 326 DAEKIYKMDNSREN 339 (470)
Q Consensus 326 ~~~~a~~~~p~~~~ 339 (470)
.|++|+.++|....
T Consensus 475 ~~~~A~~L~P~~pt 488 (517)
T PRK10153 475 AYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHhcCCCCch
Confidence 88888888887443
No 227
>KOG1070|consensus
Probab=99.03 E-value=3.9e-07 Score=92.69 Aligned_cols=220 Identities=15% Similarity=0.113 Sum_probs=175.7
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCh----HHHHHHHHHHHHHHHHHHHH
Q psy16214 52 GMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE-LDPDNP----AIAQESKALETMAKNFEGAS 126 (470)
Q Consensus 52 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~----~~~~~l~~~~~~~~~~~~a~ 126 (470)
++-.+..+.|++.+.-+|+..-.|...-.-++++++.++|.+..++++. +++... .+|..+-.+...
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~-------- 1509 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA-------- 1509 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh--------
Confidence 3344567789999999999999999999999999999999999999986 444332 233222222111
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH
Q psy16214 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV 206 (470)
Q Consensus 127 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 206 (470)
-|.-+...+.|+++.+.+ +...++..+..+|...+++++|.++++..++...+...+|..++..++..++-+.|.
T Consensus 1510 ----yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1510 ----YGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred ----hCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHH
Confidence 134445566777776654 334567778899999999999999999999988888899999999999999999999
Q ss_pred HHHHHHHhhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcC
Q psy16214 207 NHFQLLLKLAPD--HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG 284 (470)
Q Consensus 207 ~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g 284 (470)
..+.+|++.-|. +....... +..-++.|+.+.+..+|+..+...|. ...+|.-....-.+.|
T Consensus 1585 ~lL~rAL~~lPk~eHv~~Iskf------------AqLEFk~GDaeRGRtlfEgll~ayPK----RtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKF------------AQLEFKYGDAERGRTLFEGLLSAYPK----RTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHH------------HHHHhhcCCchhhHHHHHHHHhhCcc----chhHHHHHHHHHHccC
Confidence 999999999888 44444444 88889999999999999999999998 5677998899999999
Q ss_pred CHHHHHHHHHHHHHhC
Q psy16214 285 KYNEAIADCTLALEKD 300 (470)
Q Consensus 285 ~~~~A~~~~~~al~~~ 300 (470)
+.+.+...|++++.+.
T Consensus 1649 ~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1649 DIKYVRDLFERVIELK 1664 (1710)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999998874
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=99.02 E-value=3.1e-08 Score=90.86 Aligned_cols=164 Identities=13% Similarity=0.057 Sum_probs=126.4
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHh---hcCCCChHHHHHHHHHHhcc---------CChHHHHHHHHHHHhhCCChH
Q psy16214 156 LMKAECLAHLNR---LQEAQEIANSIL---ATDKQNPDAVFVRGLCLYYD---------DKMDLAVNHFQLLLKLAPDHA 220 (470)
Q Consensus 156 ~~~a~~~~~~~~---~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~ 220 (470)
+.+|...+..+. ...|+.++.+++ .++|....++..++.|++.. .+..+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 556666555443 467889999999 89999999999999988643 234577788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214 221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300 (470)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (470)
.+...+ |.+....++++.|+..|++|+.++|+ .+.+|+..|.++...|+.++|++.++++++++
T Consensus 339 ~a~~~~------------g~~~~~~~~~~~a~~~f~rA~~L~Pn----~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 339 KILAIM------------GLITGLSGQAKVSHILFEQAKIHSTD----IASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred HHHHHH------------HHHHHhhcchhhHHHHHHHHhhcCCc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 888877 88888888888888888888888888 56778888888888888888888888888888
Q ss_pred CCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCC
Q psy16214 301 PNYLKALSRRCKC-FHALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 301 p~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~p 335 (470)
|.-..+-...-++ .+-....++|+..|-+-.+...
T Consensus 403 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (458)
T PRK11906 403 PRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESES 438 (458)
T ss_pred chhhHHHHHHHHHHHHcCCchhhhHHHHhhcccccc
Confidence 8876665555555 5556667778877766554433
No 229
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.00 E-value=5e-06 Score=73.92 Aligned_cols=145 Identities=15% Similarity=0.072 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16214 167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246 (470)
Q Consensus 167 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (470)
+...|.....+++++.|+....-..-+..++..|+..++-.+++.+.+..|.- .++. ..++.+.|
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~ia~--------------lY~~ar~g 308 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-DIAL--------------LYVRARSG 308 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-HHHH--------------HHHHhcCC
Confidence 35566666667777777777766667777777777777777777777766643 2221 11222333
Q ss_pred CHHHHHHHHHH---HHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHH
Q psy16214 247 KNQEAFDIYTE---ALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL-GQYKE 322 (470)
Q Consensus 247 ~~~~A~~~~~~---al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~ 322 (470)
+ .++.-+++ .-.+.|+ +......++..-+.-|++..|..-.+.+....|. ..++..++.+-... |+-.+
T Consensus 309 d--ta~dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~ 381 (531)
T COG3898 309 D--TALDRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGK 381 (531)
T ss_pred C--cHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHH
Confidence 3 23333333 2344555 3455666777777777777777777777777776 34566667666654 77777
Q ss_pred HHHHHHHHHhc
Q psy16214 323 CVIDAEKIYKM 333 (470)
Q Consensus 323 A~~~~~~a~~~ 333 (470)
+..++-++++-
T Consensus 382 vR~wlAqav~A 392 (531)
T COG3898 382 VRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhcC
Confidence 77777777764
No 230
>KOG4642|consensus
Probab=99.00 E-value=1.1e-09 Score=90.05 Aligned_cols=100 Identities=34% Similarity=0.465 Sum_probs=95.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.++.+.+.|+.++....|..|+.+|.++|.++|..+..+.+++.|++++.+++.+...+.++++++|+...+++.+|.+.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcC
Q psy16214 83 IALGDAPTARSNLKALQELD 102 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~ 102 (470)
.....+++|+..+.++..+.
T Consensus 89 l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhhccccHHHHHHHHHHHHH
Confidence 99999999999999997643
No 231
>KOG1941|consensus
Probab=98.98 E-value=2.2e-07 Score=81.42 Aligned_cols=178 Identities=13% Similarity=0.092 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHH
Q psy16214 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNP-----DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYK 227 (470)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 227 (470)
.++.+++..+...-++.+++.+.+..+.+....+ .+...++.++..++.++++++.|+++++..-++.+....+
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl- 162 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL- 162 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee-
Confidence 4677888888888999999999888877644333 5777899999999999999999999998765544332211
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc------CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q psy16214 228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR------NININSKLLHNRATVLFKMGKYNEAIADCTLALEKD- 300 (470)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 300 (470)
+-....|..+-...++++|+-+..+|..+... +......+++.++.++..+|+.-.|.++++++.++.
T Consensus 163 -----qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 163 -----QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred -----ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 11122288999999999999999999876432 122245678899999999999999999999998762
Q ss_pred -----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 301 -----PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 301 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+.....+.-+|.+|...|+.+.|..-|+.|.....+
T Consensus 238 ~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 238 QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 344677888999999999999999999999987643
No 232
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.98 E-value=2.2e-08 Score=87.87 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=95.8
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHH
Q psy16214 120 KNFEGASKA-FEANDYRTAMFYLDRAMDQGVAS---KTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVR 192 (470)
Q Consensus 120 ~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l 192 (470)
..+..|..+ +..++|++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|.++++.+|++ +++++.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 346677766 56799999999999999999998 5799999999999999999999999999988875 7899999
Q ss_pred HHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 193 GLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 193 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
|.++...|++++|+..|+++++..|++..+....
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~ 257 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ 257 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9999999999999999999999999988765543
No 233
>KOG0720|consensus
Probab=98.97 E-value=8.3e-10 Score=99.08 Aligned_cols=68 Identities=35% Similarity=0.641 Sum_probs=63.4
Q ss_pred ccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCC
Q psy16214 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRG 426 (470)
Q Consensus 353 ~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~ 426 (470)
.+..+.|.+||+..++++.+|||.||++|..-||||+.. +.|++.|+.+..|||++||++||..||.-
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~------~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI------PRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC------hhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 346899999999999999999999999999999999986 57899999999999999999999999963
No 234
>KOG4555|consensus
Probab=98.96 E-value=5.4e-08 Score=72.23 Aligned_cols=100 Identities=22% Similarity=0.287 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF----SKGLIRQIK 80 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 80 (470)
..+-..|..+...|+.+.|++.|.++|.+.|..+.+|.+++.++.-.|+.++|+..+++++++.... ..++...|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3466778999999999999999999999999999999999999999999999999999999985443 457889999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC
Q psy16214 81 CNIALGDAPTARSNLKALQELDPD 104 (470)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~l~~~p~ 104 (470)
+|..+|+.+.|...|+.+-++...
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCH
Confidence 999999999999999999887654
No 235
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.95 E-value=2.2e-09 Score=73.83 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=36.5
Q ss_pred HhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214 15 YKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI 79 (470)
Q Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 79 (470)
+..|+|++|+..|++++..+|++..+++.+|.||+..|++++|...+++++..+|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555555555555555555555555555555555555555555555555555555555444444
No 236
>KOG3081|consensus
Probab=98.94 E-value=1.3e-06 Score=73.60 Aligned_cols=262 Identities=15% Similarity=0.117 Sum_probs=182.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL 85 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 85 (470)
.+|.. +.+|..|+|..++..-++.-... ........+..+|+.+|++..-+......- .....+...++.....-
T Consensus 11 ~LF~i-Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 11 ELFNI-RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELE 85 (299)
T ss_pred hHHHH-HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCc
Confidence 34443 56677899999888877764443 667778888899999999877666554332 12234455555555555
Q ss_pred CChHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 86 GDAPTARSNLKALQELDPDNPA-IAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH 164 (470)
Q Consensus 86 g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 164 (470)
++.++-+..+...+........ .+ ....|..++..+++++|+..+... .+.++...-..|+.+
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~-----------~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLID-----------LLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLK 149 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHH-----------HHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHH
Confidence 5555555544444332222221 22 234456688889999999877763 445666677888999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214 165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY----DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN 240 (470)
Q Consensus 165 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 240 (470)
+.+.+-|...++++.+.+.+ ..+..+|..+.. .++...|.-+|+..-...|..+...... +.
T Consensus 150 ~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~------------Av 215 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQ------------AV 215 (299)
T ss_pred HHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccH------------HH
Confidence 99999999999999887654 344445554432 3468889999999888666666666555 89
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHH
Q psy16214 241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAI-ADCTLALEKDPNYLKA 306 (470)
Q Consensus 241 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~ 306 (470)
+++.+++|++|...++.++..++++ +..+.|+-.+-...|...++. ..+.+....+|+++.+
T Consensus 216 ~~l~~~~~eeAe~lL~eaL~kd~~d----petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 216 CHLQLGRYEEAESLLEEALDKDAKD----PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHhcCHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9999999999999999999999995 456889888888888876655 4556666677887644
No 237
>KOG0551|consensus
Probab=98.94 E-value=2e-08 Score=86.89 Aligned_cols=104 Identities=36% Similarity=0.561 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK 312 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 312 (470)
..+.+.|+-|++.++|..|+.+|.+.|+....++.+++.+|.|+|.|...+|+|..|+..|.+++.++|++..++++-|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 313 CFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 313 ~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
|++.+.++.+|+.+++..+.++..
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999888754
No 238
>KOG2053|consensus
Probab=98.94 E-value=4e-05 Score=75.36 Aligned_cols=206 Identities=15% Similarity=0.020 Sum_probs=134.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214 13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR 92 (470)
Q Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 92 (470)
-....++|.+|+....+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+-.+-.||..++++++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 34677899999999999999999999999999999999999999998888877788888899999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHH----HHHHHHHhc----------------------------CCHHHHHHH
Q psy16214 93 SNLKALQELDPDNPAIAQESKALETMAKNF----EGASKAFEA----------------------------NDYRTAMFY 140 (470)
Q Consensus 93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~----~~a~~~~~~----------------------------~~~~~A~~~ 140 (470)
.+|++++..+|. .+....+-..+...+.+ ..|+.+++. --..-|...
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 999999999999 55554444444333322 223333221 001112222
Q ss_pred HHHHHHhC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHH-Hhh-cCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC
Q psy16214 141 LDRAMDQG-VASK-TYKLMKAECLAHLNRLQEAQEIANS-ILA-TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA 216 (470)
Q Consensus 141 ~~~~l~~~-p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~-~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 216 (470)
.++.++.. +-.. .=....-.++...|++++|...+.. ... ..+.+...-......+...+++.+-.+...+++...
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 33333332 1110 0011123344555666666666622 222 222333333344455556666666666666666666
Q ss_pred CCh
Q psy16214 217 PDH 219 (470)
Q Consensus 217 p~~ 219 (470)
+++
T Consensus 257 ~Dd 259 (932)
T KOG2053|consen 257 NDD 259 (932)
T ss_pred Ccc
Confidence 665
No 239
>KOG0545|consensus
Probab=98.91 E-value=4.1e-08 Score=81.22 Aligned_cols=118 Identities=27% Similarity=0.337 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------cccCccc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16214 232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKI--------DARNINI------NSKLLHNRATVLFKMGKYNEAIADCTLAL 297 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (470)
......+|+-++..|+|.+|...|..|+.. .|.++.. ...++.|.+.|++..|+|-++++.+..++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 334455699999999999999999998732 4554432 24678899999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHH
Q psy16214 298 EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS--RENHNFLEEAKRL 349 (470)
Q Consensus 298 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~l~~~~~~ 349 (470)
..+|.+..+++.+|.++...=+..+|...+.++++++|+ +-+...|+..+..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r 311 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENR 311 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 4445555444433
No 240
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.91 E-value=4.8e-08 Score=74.17 Aligned_cols=97 Identities=18% Similarity=0.014 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN---VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR---FSKGLIR 77 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 77 (470)
|+.+++.|..+-..|+.++|+.+|++++...+. ...+++.+|.++..+|++++|+..+++++...|+ +......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 467899999999999999999999999997544 3678999999999999999999999999999888 7788888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q psy16214 78 QIKCNIALGDAPTARSNLKALQE 100 (470)
Q Consensus 78 la~~~~~~g~~~~A~~~~~~~l~ 100 (470)
++.++...|++++|+..+..++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 241
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.90 E-value=5.1e-09 Score=71.97 Aligned_cols=67 Identities=24% Similarity=0.326 Sum_probs=61.0
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy16214 48 YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA 114 (470)
Q Consensus 48 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 114 (470)
++..|++++|+..|++++..+|++..+++.+|.||...|++++|...+.+++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999998887765554
No 242
>KOG0376|consensus
Probab=98.90 E-value=3.9e-09 Score=96.12 Aligned_cols=116 Identities=32% Similarity=0.479 Sum_probs=109.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
..++.+...|+.++..+.|+.|+..|.+||+++|+.+..+.+++.+++..+++..|+.++.++++++|....+|++.|.+
T Consensus 2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a 81 (476)
T KOG0376|consen 2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTA 81 (476)
T ss_pred chhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHH
Confidence 35778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214 82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALET 117 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 117 (470)
...++.+.+|...|+....+.|+++.+...+..+..
T Consensus 82 ~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 82 VMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999999999998776666643
No 243
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.90 E-value=1.6e-08 Score=88.71 Aligned_cols=64 Identities=30% Similarity=0.517 Sum_probs=56.5
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCC--ccHHhhHHHHHHHHHHHHHHhhcCCh
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTN--ATQAQKLEQEKLFKEVGEAYGILSDP 417 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~--~~~~~~~~~~~~~~~i~~ay~~l~d~ 417 (470)
...++|++||+..+++.++||++||+++++||||+... .+++..+.++++|++|++||++|+..
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44789999999999999999999999999999999754 35666778999999999999999753
No 244
>KOG1070|consensus
Probab=98.89 E-value=2.1e-06 Score=87.67 Aligned_cols=216 Identities=13% Similarity=0.085 Sum_probs=181.0
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHcCChHHHHHHHH
Q psy16214 22 KALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-DPRF----SKGLIRQIKCNIALGDAPTARSNLK 96 (470)
Q Consensus 22 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 96 (470)
+..+-|++.+..+|+++..|...-.-.+.+++.++|.+.+++|+.. ++.. ...|..+-.....-|.-+...+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 4466788889999999999999999999999999999999999974 4443 2344444444455566677788899
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16214 97 ALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176 (470)
Q Consensus 97 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 176 (470)
+|.+.... ..++..|..+ |-..+.+++|.++++..++.......+|..++..++..++-+.|...+.
T Consensus 1522 RAcqycd~-~~V~~~L~~i------------y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1522 RACQYCDA-YTVHLKLLGI------------YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred HHHHhcch-HHHHHHHHHH------------HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 98875422 2333333333 4455788899999999999998999999999999999999999999999
Q ss_pred HHhhcCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy16214 177 SILATDKQ--NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDI 254 (470)
Q Consensus 177 ~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 254 (470)
++++.-|. +.+..-..|.+-++.|+.+.+...|+..+..+|.-.+.|..+ ...-.+.++.+-+..+
T Consensus 1589 rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY------------id~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY------------IDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHH------------HHHHHccCCHHHHHHH
Confidence 99999998 788888999999999999999999999999999999999998 8888899999999999
Q ss_pred HHHHHhhc
Q psy16214 255 YTEALKID 262 (470)
Q Consensus 255 ~~~al~~~ 262 (470)
|++++.+.
T Consensus 1657 feRvi~l~ 1664 (1710)
T KOG1070|consen 1657 FERVIELK 1664 (1710)
T ss_pred HHHHHhcC
Confidence 99998764
No 245
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.89 E-value=2.4e-05 Score=69.76 Aligned_cols=273 Identities=18% Similarity=0.124 Sum_probs=137.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCC
Q psy16214 11 GNTQYKLKQYSKALKCYSEAISVCPN--VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-SKGLIRQIKCNIALGD 87 (470)
Q Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~ 87 (470)
|.+.-..|+-..|...-.++-++-.. .+.++..-+.+-+..|+++.|.+-|+..+. +|.. .-.+..|-.--..+|.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhccc
Confidence 44444556666666665555433222 234444455666666777777776665543 3321 1112222223345666
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcC
Q psy16214 88 APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT-YKLMKAECLAHLN 166 (470)
Q Consensus 88 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~~a~~~~~~~ 166 (470)
.+.|+.+-+++....|.-+.++...-.. ....|+|+.|+++++......--... +-..+
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~------------r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r-------- 229 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEA------------RCAAGDWDGALKLVDAQRAAKVIEKDVAERSR-------- 229 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHH------------HHhcCChHHHHHHHHHHHHHHhhchhhHHHHH--------
Confidence 7777777777666666655544222211 23345555555444433222100000 00000
Q ss_pred CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16214 167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246 (470)
Q Consensus 167 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (470)
.-.+...+... ..-+...|...-.+++++.|+....-..- +..++..|
T Consensus 230 -------------------AvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~A------------Aralf~d~ 277 (531)
T COG3898 230 -------------------AVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVA------------ARALFRDG 277 (531)
T ss_pred -------------------HHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHH------------HHHHHhcc
Confidence 00111111111 12335566666667777777766655544 66777777
Q ss_pred CHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16214 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT---LALEKDPNYLKALSRRCKCFHALGQYKEC 323 (470)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---~al~~~p~~~~~~~~la~~~~~~g~~~~A 323 (470)
+..++-.+++.+.+..|.. .+ +.+|....--+.++.-++ +...+.|++.+..+.++..-+.-|++..|
T Consensus 278 ~~rKg~~ilE~aWK~ePHP-----~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~A 348 (531)
T COG3898 278 NLRKGSKILETAWKAEPHP-----DI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAA 348 (531)
T ss_pred chhhhhhHHHHHHhcCCCh-----HH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHH
Confidence 7777777777777666641 11 223332222223333333 33345677777777777777777777777
Q ss_pred HHHHHHHHhcCCChhHHHHHHH
Q psy16214 324 VIDAEKIYKMDNSRENHNFLEE 345 (470)
Q Consensus 324 ~~~~~~a~~~~p~~~~~~~l~~ 345 (470)
..--+.+..+.|...+.-++..
T Consensus 349 Ra~Aeaa~r~~pres~~lLlAd 370 (531)
T COG3898 349 RAKAEAAAREAPRESAYLLLAD 370 (531)
T ss_pred HHHHHHHhhhCchhhHHHHHHH
Confidence 7777777777776444444433
No 246
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.88 E-value=7.6e-08 Score=88.88 Aligned_cols=120 Identities=21% Similarity=0.318 Sum_probs=103.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHH
Q psy16214 192 RGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSK 271 (470)
Q Consensus 192 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 271 (470)
+-.++...++++.|+..+++..+.+|+. ...+ +.++...++-.+|+..+.+++...|.+ +.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev---~~~L------------A~v~l~~~~E~~AI~ll~~aL~~~p~d----~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEV---AVLL------------ARVYLLMNEEVEAIRLLNEALKENPQD----SE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcH---HHHH------------HHHHHhcCcHHHHHHHHHHHHHhCCCC----HH
Confidence 3444556788999999999999988863 3334 888888899999999999999999884 66
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214 272 LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI 330 (470)
Q Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 330 (470)
++...+..+...++++.|+...++++.+.|++...|+.|+.+|..+|++++|+..+..+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 78889999999999999999999999999999999999999999999999999877733
No 247
>KOG2300|consensus
Probab=98.88 E-value=6e-05 Score=69.09 Aligned_cols=196 Identities=16% Similarity=0.075 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHHHhC------CCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhhc---CCC-------ChH
Q psy16214 132 NDYRTAMFYLDRAMDQG------VASK--------TYKLMKAECLAHLNRLQEAQEIANSILAT---DKQ-------NPD 187 (470)
Q Consensus 132 ~~~~~A~~~~~~~l~~~------p~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~-------~~~ 187 (470)
|-+++|.++-++++... |... ..+..++.|-.-.|++.+|++....+.+. .|. .+.
T Consensus 289 gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ 368 (629)
T KOG2300|consen 289 GYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQ 368 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHH
Confidence 55666666666666441 1111 12334555666677777777776665543 333 244
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc
Q psy16214 188 AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN 267 (470)
Q Consensus 188 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 267 (470)
+.+.+|......+.++.|...|..+++....... + .....+.+.+|...++-+.-.+.++ .+.|.+..
T Consensus 369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl-~--------a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~ 436 (629)
T KOG2300|consen 369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL-Q--------AFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTN 436 (629)
T ss_pred HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH-H--------HHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCC
Confidence 5667777777777788888887777765432211 1 1111234888888776555444443 34444321
Q ss_pred ------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214 268 ------INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 268 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 335 (470)
..+.+++..|...+.++++.+|...+.+.++...- ....+..++.+....|+..++.+..+-++.+..
T Consensus 437 s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 437 SLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 13466777888899999999999999999987521 145567789999999999999999988888765
Q ss_pred C-hhH
Q psy16214 336 S-REN 339 (470)
Q Consensus 336 ~-~~~ 339 (470)
. +++
T Consensus 517 Ki~Di 521 (629)
T KOG2300|consen 517 KIPDI 521 (629)
T ss_pred cCCCc
Confidence 4 444
No 248
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.88 E-value=4.3e-09 Score=77.50 Aligned_cols=52 Identities=31% Similarity=0.460 Sum_probs=46.2
Q ss_pred ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcC
Q psy16214 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~ 415 (470)
..++|++||+..+++.++|+++||++++++|||+..+ ...|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs---------~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS---------TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999998543 346889999999983
No 249
>KOG1308|consensus
Probab=98.87 E-value=6.4e-09 Score=90.34 Aligned_cols=111 Identities=28% Similarity=0.398 Sum_probs=100.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFH 315 (470)
Q Consensus 236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (470)
...+.-.+..|.++.|++.|..++.++|. .+.++..++.+++++++...|+..|..++.++|+...-+-.++.+..
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~----~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPP----LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCc----hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 33477778899999999999999999999 56779999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q psy16214 316 ALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLL 350 (470)
Q Consensus 316 ~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~ 350 (470)
.+|++++|..++..+++++-+.++...|.+..-..
T Consensus 194 llg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a 228 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYDEANSATLKEVFPNA 228 (377)
T ss_pred HhhchHHHHHHHHHHHhccccHHHHHHHHHhccch
Confidence 99999999999999999998888877776654433
No 250
>KOG3617|consensus
Probab=98.87 E-value=1.1e-05 Score=78.28 Aligned_cols=296 Identities=15% Similarity=0.101 Sum_probs=170.6
Q ss_pred hcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHH------------HHHHhcCCCCHHHHHHHHHHHH
Q psy16214 16 KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDA------------KLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~la~~~~ 83 (470)
..|+.+.|.+..+-+ .+..+|-++|....+..+.+-|.-++ +++.+ +|+ +.-...|.+..
T Consensus 740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAi 811 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAI 811 (1416)
T ss_pred EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHH
Confidence 346666666555433 23456667776666666655554332 23322 332 22233455556
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--------------------HHHHHHHhcCCHHHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF--------------------EGASKAFEANDYRTAMFYLDR 143 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~A~~~~~~ 143 (470)
.+|-.++|...|.+.-.. ..+..++...+.+ ..|..+-..++.+.|+++|++
T Consensus 812 eLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 666677777666665432 2222233222222 333333344666677776664
Q ss_pred H----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh---------------------cC
Q psy16214 144 A----------MDQGVA----------SKTYKLMKAECLAHLNRLQEAQEIANSILA---------------------TD 182 (470)
Q Consensus 144 ~----------l~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~---------------------~~ 182 (470)
+ +..+|. ++..|..-|..+...|+.+.|+.+|..+-. ..
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh
Confidence 3 333443 345666778888899999999999987633 23
Q ss_pred CCChHHHHHHHHHHhccCChHHHHHHHHHHHh------hCCChHH--HHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Q psy16214 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK------LAPDHAK--AKETYKRAKLLKAKKEEGNEKFVAG-KNQEAFD 253 (470)
Q Consensus 183 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~ 253 (470)
..+..+.+.+|..|...|++.+|+..|.++-. +..++.. -...+.....-......+..|...| +...|+.
T Consensus 964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVm 1043 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVM 1043 (1416)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHH
Confidence 34566889999999999999999999887643 3322211 1111111111111112233333343 5555555
Q ss_pred HHHHH------H-----------------hhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHh-----
Q psy16214 254 IYTEA------L-----------------KIDARNININSKLLHNRATVLFKMGKYNEAIADCTL------ALEK----- 299 (470)
Q Consensus 254 ~~~~a------l-----------------~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~----- 299 (470)
+|.+| + .++|. ..+.++..-+..+....+|++|...+-. |+++
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~---sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~n 1120 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG---SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRN 1120 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC---CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55443 1 12232 2466777778888888899998876543 4443
Q ss_pred -----------CCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214 300 -----------DPN---------YLKALSRRCKCFHALGQYKECVIDAEKI 330 (470)
Q Consensus 300 -----------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 330 (470)
.|. -..++..+|.+..++|.|..|.+-|.+|
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 111 1467888999999999999998888765
No 251
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.87 E-value=1.3e-08 Score=71.01 Aligned_cols=69 Identities=25% Similarity=0.392 Sum_probs=46.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI 79 (470)
Q Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 79 (470)
...++..++|++|+.++++++..+|+++..+..+|.++..+|++.+|+..++++++..|+++.+...++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 345666677777777777777777777777777777777777777777777777777776665554443
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.87 E-value=8.5e-08 Score=81.86 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=93.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q psy16214 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY---LKALSRRCKCF 314 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 314 (470)
.+.-++..|+|..|...|..-++..|++.. .+.++++||.+++.+|++++|...|..+++..|++ +++++.+|.|.
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKYPNSTY-TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 388889999999999999999999998776 48999999999999999999999999999988776 78999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCChhH
Q psy16214 315 HALGQYKECVIDAEKIYKMDNSREN 339 (470)
Q Consensus 315 ~~~g~~~~A~~~~~~a~~~~p~~~~ 339 (470)
..+|+.++|...|+++++..|..+.
T Consensus 226 ~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 226 GRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999998443
No 253
>KOG4642|consensus
Probab=98.86 E-value=1.4e-08 Score=83.68 Aligned_cols=112 Identities=26% Similarity=0.380 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK 312 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 312 (470)
....+.|+.++...+|..|+.+|.++|.++|..+ ..|.+++.|++++++++.+...+.+++++.|+...+++.+|.
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~----~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA----SYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcc----hhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence 3445669999999999999999999999999954 459999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhcC------CChhHHHHHHHHHH
Q psy16214 313 CFHALGQYKECVIDAEKIYKMD------NSRENHNFLEEAKR 348 (470)
Q Consensus 313 ~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~l~~~~~ 348 (470)
+++....+++|+..++++..+. +..++...|..++.
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~ 128 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKK 128 (284)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence 9999999999999999997653 22677777777654
No 254
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.85 E-value=1.4e-07 Score=87.09 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=106.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH
Q psy16214 156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK 235 (470)
Q Consensus 156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 235 (470)
..+..++...++++.|+..++++.+.+|+ +...++.++...++..+|+..+.+++...|.+...+...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q--------- 240 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ--------- 240 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH---------
Confidence 34556667789999999999999988764 667789999999999999999999999999997777666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296 (470)
Q Consensus 236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (470)
+..+...++++.|+.+.++++...|+ ....|..|+.+|..+|+++.|+..++.+
T Consensus 241 ---a~fLl~k~~~~lAL~iAk~av~lsP~----~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 241 ---AEFLLSKKKYELALEIAKKAVELSPS----EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ---HHHHHhcCCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999 4567999999999999999999877743
No 255
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.82 E-value=6.2e-09 Score=92.96 Aligned_cols=77 Identities=32% Similarity=0.543 Sum_probs=72.3
Q ss_pred chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCC
Q psy16214 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDS 433 (470)
Q Consensus 357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~ 433 (470)
+-|++||+..+.+..+||++||++..++||||.+.-.++.+.+.|++++.|+.||+.|+|+..|+.|-..+.|++++
T Consensus 99 DPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQ 175 (610)
T COG5407 99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQ 175 (610)
T ss_pred ChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCc
Confidence 56999999999999999999999999999999988788999999999999999999999999999999988887763
No 256
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.81 E-value=2.9e-08 Score=69.28 Aligned_cols=68 Identities=26% Similarity=0.384 Sum_probs=63.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214 45 AACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES 112 (470)
Q Consensus 45 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 112 (470)
..+|+..+++++|+..+++++.++|+++..+..+|.++..+|++.+|+..++++++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999998875433
No 257
>KOG0551|consensus
Probab=98.81 E-value=2.8e-08 Score=85.90 Aligned_cols=106 Identities=34% Similarity=0.490 Sum_probs=96.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---Cc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVC---PN-VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIR 77 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (470)
+.|+.+...|+.+++.++|..|+..|++.|+.. |+ ++..|.++|.|.+.+|+|..|+..+.+++.++|.+..++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 357889999999999999999999999999874 33 47889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChH
Q psy16214 78 QIKCNIALGDAPTARSNLKALQELDPDNPA 107 (470)
Q Consensus 78 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 107 (470)
-|.|++.+.++.+|...++..+.++.....
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 999999999999999999998876654433
No 258
>KOG2471|consensus
Probab=98.79 E-value=1.5e-06 Score=79.24 Aligned_cols=320 Identities=16% Similarity=0.045 Sum_probs=193.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHH-hhcCCc--------hhHHHHHHHHHHHHcCChHHHHHHHHHHHh-------
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEA-ISVCPN--------VAAYYGNRAACYMMLGMYTYALDDAKLAVS------- 66 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------- 66 (470)
++..++.+...++..|+|.+|.+.+... |...|. .-..|.++|.+++++|.|.-+..+|.+|++
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999999988654 222232 234678999999999999999999999996
Q ss_pred --cCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH---HHHHHH---
Q psy16214 67 --LDP---------RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE---GASKAF--- 129 (470)
Q Consensus 67 --~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~---~a~~~~--- 129 (470)
+.| ...+..++.|..|...|++-.|.++|.++....-.+|..|..++.+-.....-. ......
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~ 398 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRS 398 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccc
Confidence 112 246789999999999999999999999999999999999999998865432111 100000
Q ss_pred -------hcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH-----cCCHHHHHHHHHHH----------------
Q psy16214 130 -------EANDYRTAMFYLDRAMDQGVA---SKTYKLMKAECLAH-----LNRLQEAQEIANSI---------------- 178 (470)
Q Consensus 130 -------~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~---------------- 178 (470)
.+|+-...+..-+.... .|. -+..-...|.+..+ ...-..--..+.-+
T Consensus 399 ~i~~~vig~g~rr~~m~~~nt~~~-~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~ 477 (696)
T KOG2471|consen 399 EIRVHVIGKGNRRQLMIEENTYVE-LAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGN 477 (696)
T ss_pred cceeeeecccchhheeecccceec-cccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCC
Confidence 00110000000000000 000 01111112222211 11100000000000
Q ss_pred -------------hhcCCCCh-----------HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Q psy16214 179 -------------LATDKQNP-----------DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA 234 (470)
Q Consensus 179 -------------l~~~p~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 234 (470)
+...|+.+ .++-..+.+-..+|+.-.|+..-.+.+.. |+-..++..++.+
T Consensus 478 ~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHi----- 551 (696)
T KOG2471|consen 478 TTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHI----- 551 (696)
T ss_pred CCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHH-----
Confidence 00001111 23455666778899999999999888875 3444444444322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----------------------hccc----------Cc-cchHHHHHHHHHHH
Q psy16214 235 KKEEGNEKFVAGKNQEAFDIYTEALK-----------------------IDAR----------NI-NINSKLLHNRATVL 280 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~A~~~~~~al~-----------------------~~p~----------~~-~~~~~~~~~la~~~ 280 (470)
-.|.++....+..+|..++.--+- ++|. .+ .....+++++|.++
T Consensus 552 --YAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~ 629 (696)
T KOG2471|consen 552 --YAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAAL 629 (696)
T ss_pred --HHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHH
Confidence 225666677778888777654220 0110 00 01235677888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16214 281 FKMGKYNEAIADCTLALEKDP--NYLKALSRRCKCFHALGQYKECVIDAEKIY 331 (470)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 331 (470)
.-+|++++|..++..+..+-| ..+++....-.+-+.+|+...|...+++..
T Consensus 630 alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 630 ALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 888888888888888877766 456666666666677788888877776653
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.79 E-value=2.8e-07 Score=71.03 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q psy16214 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY---LKALSRRCKC 313 (470)
Q Consensus 237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 313 (470)
..|...++.|+|.+|++.|+......|..+. ...+...++.+|++.+++++|+..+++-++++|++ ..+++.+|.+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEY-AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3499999999999999999999999988665 46889999999999999999999999999999988 5689999999
Q ss_pred HHHhCC---------------HHHHHHHHHHHHhcCCChh
Q psy16214 314 FHALGQ---------------YKECVIDAEKIYKMDNSRE 338 (470)
Q Consensus 314 ~~~~g~---------------~~~A~~~~~~a~~~~p~~~ 338 (470)
+..... ..+|...|+++++..|+++
T Consensus 94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 999877 8899999999999999844
No 260
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.78 E-value=2.5e-06 Score=67.85 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh-hCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16214 167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK-LAPDHAKAKETYKRAKLLKAKKEEGNEKFVA 245 (470)
Q Consensus 167 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (470)
+.+.......+.+...|. ..-.+.+|..+...|++.+|...|++++. +..+++.....+ ++..+..
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLgl------------A~Aqfa~ 137 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGL------------AQAQFAI 137 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHH------------HHHHHhh
Confidence 444444444455555553 33456677777777888888888777776 445555555555 7777777
Q ss_pred CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16214 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVI 325 (470)
Q Consensus 246 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 325 (470)
+++..|...+++..+.+|.-. .+.....+|.++...|++.+|...|+.++...|. +.+....+..+.++|+..+|..
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r--~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFR--SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccC--CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 888888888887777766533 2344666788888888888888888888888777 6777778888888887777665
Q ss_pred HHHHH----HhcCCC--hhHHHHHHHHHHHhh
Q psy16214 326 DAEKI----YKMDNS--RENHNFLEEAKRLLK 351 (470)
Q Consensus 326 ~~~~a----~~~~p~--~~~~~~l~~~~~~~~ 351 (470)
-+..+ .+-.|. ...+++++.+-..++
T Consensus 215 q~~~v~d~~~r~~~H~rkh~reW~~~A~~~~~ 246 (251)
T COG4700 215 QYVAVVDTAKRSRPHYRKHHREWIKTANERLK 246 (251)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 55443 333332 444555555544443
No 261
>KOG2053|consensus
Probab=98.77 E-value=3.5e-05 Score=75.79 Aligned_cols=227 Identities=17% Similarity=0.078 Sum_probs=168.0
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 49 MMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA 128 (470)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 128 (470)
...+++.+|+..+.+.++..|+...+....|.++.++|+.++|..+++..-...+++......+..+ +
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~------------y 87 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNV------------Y 87 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHH------------H
Confidence 4678999999999999999999999999999999999999999988888877888877766666665 4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHH-HHHHhccCChH----
Q psy16214 129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVR-GLCLYYDDKMD---- 203 (470)
Q Consensus 129 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~---- 203 (470)
.+.+++++|+.+|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..|+++-.+... ..+.......+
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccccc
Confidence 5567888999999999999999 88888888999999998877666666667788887654444 33333333333
Q ss_pred -----HHHHHHHHHHhhC-CChHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhcccCccchHHHHHH
Q psy16214 204 -----LAVNHFQLLLKLA-PDHAKA-KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL-KIDARNININSKLLHN 275 (470)
Q Consensus 204 -----~A~~~~~~~l~~~-p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~ 275 (470)
-|...+++.++.. +-...+ ...+ -.++..++++++|...+..-+ +..+.- +...-..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly------------l~iL~~~~k~~eal~~l~~~la~~l~~~---~~~l~~~ 231 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILY------------LLILELQGKYQEALEFLAITLAEKLTSA---NLYLENK 231 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHH------------HHHHHhcccHHHHHHHHHHHHHHhcccc---chHHHHH
Confidence 2444455555544 211111 1111 456677899999999995433 333321 2233445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16214 276 RATVLFKMGKYNEAIADCTLALEKDPNY 303 (470)
Q Consensus 276 la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (470)
....+..++++.+-.+...+++...+++
T Consensus 232 ~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 232 KLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 6777888999999999999999999997
No 262
>KOG4555|consensus
Probab=98.77 E-value=3.8e-07 Score=67.82 Aligned_cols=94 Identities=23% Similarity=0.270 Sum_probs=86.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY----LKALSRRCKCF 314 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 314 (470)
|..+...|+.+.|++.|.+++.+.|. .+.+|.+++.++.-+|+.++|++.+++++++.... ..++..+|.+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~----raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE----RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc----chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 88899999999999999999999999 67789999999999999999999999999996443 56789999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCC
Q psy16214 315 HALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 315 ~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
..+|+-+.|...|+.+.++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999988764
No 263
>KOG2471|consensus
Probab=98.76 E-value=2.1e-06 Score=78.31 Aligned_cols=290 Identities=13% Similarity=0.072 Sum_probs=194.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHH-HHcCChHHHHHHHHHHHhc-----CC----------
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACY-MMLGMYTYALDDAKLAVSL-----DP---------- 69 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~-----~p---------- 69 (470)
.+...+...+..++|+..++.++..-.++.++..++++++.+. +..|.+... ..++....+ .|
T Consensus 19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~~gld~~ 97 (696)
T KOG2471|consen 19 SLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVSSGLSLK 97 (696)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchhcchhhh
Confidence 4556677788899999999999999888887777777777654 445543322 222222111 11
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----ChH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 70 RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD----NPA-IAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRA 144 (470)
Q Consensus 70 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 144 (470)
.....+++.|.+++....+..|++........-.. ... .......++......++|..++. ++.+.
T Consensus 98 ~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~---------vL~~~ 168 (696)
T KOG2471|consen 98 QGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLN---------VLAEI 168 (696)
T ss_pred cchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH
Confidence 23457788899998888888888877665542211 111 11111122222222333332221 11111
Q ss_pred HHh------------------CC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy16214 145 MDQ------------------GV------------ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL 194 (470)
Q Consensus 145 l~~------------------~p------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 194 (470)
+.. -| -...+.......+++..+...+....+.+.....+++.++...+.
T Consensus 169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq 248 (696)
T KOG2471|consen 169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQ 248 (696)
T ss_pred HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHH
Confidence 111 01 011344556677788888888888888888888899999999999
Q ss_pred HHhccCChHHHHHHHHHH-HhhCCC------hHH--HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hc--
Q psy16214 195 CLYYDDKMDLAVNHFQLL-LKLAPD------HAK--AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK-ID-- 262 (470)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~-l~~~p~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~-- 262 (470)
.++..|++.+|.+.+... +...|. -.. .|.++ |.++++.+.|.-+..+|.+|++ .+
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl------------GcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL------------GCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc------------ceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999987654 222332 111 23344 9999999999999999999995 21
Q ss_pred ------ccC-----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214 263 ------ARN-----ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL 317 (470)
Q Consensus 263 ------p~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 317 (470)
|.. ..-...++++.|..|...|+.-.|.++|.+++.....+|..|.++|.|.+..
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 110 0113578999999999999999999999999999999999999999998753
No 264
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.76 E-value=4.1e-07 Score=69.09 Aligned_cols=96 Identities=24% Similarity=0.227 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q psy16214 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN---YLKALSRRCK 312 (470)
Q Consensus 236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 312 (470)
++.+.++-..|+.++|+.+|++++........ ...++..+|.++..+|++++|+..+++++...|+ +..+...++.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGAD-RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 34499999999999999999999997655443 4678999999999999999999999999999898 7888888999
Q ss_pred HHHHhCCHHHHHHHHHHHHh
Q psy16214 313 CFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 313 ~~~~~g~~~~A~~~~~~a~~ 332 (470)
++...|++++|+..+-.++.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999988775
No 265
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.75 E-value=2.3e-08 Score=79.99 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214 368 ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR 425 (470)
Q Consensus 368 ~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~ 425 (470)
.+..+|+++|++++.++|||+....++..+..+...+..|++||++|+||.+|+.|+-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 4568999999999999999998776666777788999999999999999999999987
No 266
>KOG0545|consensus
Probab=98.74 E-value=3.5e-07 Score=75.84 Aligned_cols=106 Identities=25% Similarity=0.389 Sum_probs=95.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCc----------hhHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISV--------CPN----------VAAYYGNRAACYMMLGMYTYALDDAKLA 64 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~----------~~~~~~~~a~~~~~~g~~~~A~~~~~~a 64 (470)
.+..+...|+.+|..|+|.+|...|..||.. .|. ....+.+.+.|++..|+|-++++.+..+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999743 333 3567889999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHH
Q psy16214 65 VSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI 108 (470)
Q Consensus 65 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 108 (470)
+..+|.+.++++..|.++...-+.++|...|.++++++|.-..+
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999999999999999999999999999976554
No 267
>KOG2796|consensus
Probab=98.72 E-value=2.7e-05 Score=65.68 Aligned_cols=139 Identities=21% Similarity=0.228 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q psy16214 154 YKLMKAECLAHLNRLQEAQEIANSILATD-KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL 232 (470)
Q Consensus 154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 232 (470)
+.+.++.++.-.+.|.-.+..+.++++.+ |..+.....+|.+.++.||.+.|..+++++-+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~--------------- 243 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ--------------- 243 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh---------------
Confidence 34445556666666666666666666655 44455555666666666666666666654432111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK 312 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 312 (470)
.++ +......+..+.+.++.-.+++.+|...+.+++..+|.++.+..+.|.
T Consensus 244 ---------------------------kL~--~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 244 ---------------------------KLD--GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred ---------------------------hhh--ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 011 111123445566666666677777777777777777777777777777
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 313 CFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 313 ~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
|++.+|+...|++.++.++++.|.
T Consensus 295 cllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCc
Confidence 777777777777777777777776
No 268
>KOG2796|consensus
Probab=98.69 E-value=7.1e-06 Score=69.09 Aligned_cols=205 Identities=13% Similarity=0.055 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA 150 (470)
Q Consensus 71 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 150 (470)
+...|...-.++.++..+++|..-+...-+++..+-.. +---.+.|+
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Y---------------------------------ey~p~iyp~ 114 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYY---------------------------------EYYPHVYPG 114 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceee---------------------------------eeccccCCC
Confidence 35566667777888888888887777666655433211 000111222
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHH
Q psy16214 151 S------KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE 224 (470)
Q Consensus 151 ~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 224 (470)
. .......|.+....|+..+.+.-+..+... .-.+-.........+..+..+++-+. .+..
T Consensus 115 rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy 181 (366)
T KOG2796|consen 115 RRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRLG------RVMY 181 (366)
T ss_pred CcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH------HHHH
Confidence 1 123444677777788877777666554431 11112222233334666777766543 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C
Q psy16214 225 TYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK----D 300 (470)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~ 300 (470)
.+ ..++.-.+.|.-.+..+.+.++.+|.. .+.+...+|.+-++.|+.+.|..+++.+-+. +
T Consensus 182 ~~------------~~~llG~kEy~iS~d~~~~vi~~~~e~---~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~ 246 (366)
T KOG2796|consen 182 SM------------ANCLLGMKEYVLSVDAYHSVIKYYPEQ---EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD 246 (366)
T ss_pred HH------------HHHHhcchhhhhhHHHHHHHHHhCCcc---cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence 44 778888888999999999999877433 4567888999999999999999999855433 2
Q ss_pred --CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 301 --PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 301 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.....+..+.+.++.-.+++.+|...+.+++..+|.
T Consensus 247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~ 284 (366)
T KOG2796|consen 247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR 284 (366)
T ss_pred ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC
Confidence 334667788889999999999999999999999997
No 269
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.67 E-value=3.6e-07 Score=72.70 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q psy16214 20 YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGM----------YTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD-- 87 (470)
Q Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 87 (470)
|+.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|+.|+.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6889999999999999999999999999987744 5678888999999999999999999999988764
Q ss_pred ---------hHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy16214 88 ---------APTARSNLKALQELDPDNPAIAQESKA 114 (470)
Q Consensus 88 ---------~~~A~~~~~~~l~~~p~~~~~~~~l~~ 114 (470)
|++|..+|+++...+|++......|..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 788999999999999999876544443
No 270
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.67 E-value=1.1e-07 Score=87.20 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=65.1
Q ss_pred cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy16214 33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKG---LIRQIKCNIALGDAPTARSNLKALQELD 102 (470)
Q Consensus 33 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~ 102 (470)
.+|+++.+++++|.+|+.+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999999854 9999999999999999999999999973
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.64 E-value=3.6e-05 Score=74.24 Aligned_cols=165 Identities=13% Similarity=0.061 Sum_probs=125.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHH-------HHHHH-HH--h--ccCChHHHHHHHHHHHhhCCChHHHHHH
Q psy16214 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAV-------FVRGL-CL--Y--YDDKMDLAVNHFQLLLKLAPDHAKAKET 225 (470)
Q Consensus 158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-------~~la~-~~--~--~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 225 (470)
+..+.--.|+-+.++..+.++.+. ++--... +.... .+ . ...+.+.|...+.......|+.......
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 334444568999999999998773 2221111 11111 11 1 3456788999999999999998777666
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H
Q psy16214 226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-L 304 (470)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~ 304 (470)
. |.++...|+.++|++.|++++.....-+.+....++.+++++..+.+|++|..++.+.++.+.-+ .
T Consensus 273 ~------------gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 273 E------------GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred H------------HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 6 99999999999999999999976666666667889999999999999999999999999876554 3
Q ss_pred HHHHHHHHHHHHhCCH-------HHHHHHHHHHHhcCC
Q psy16214 305 KALSRRCKCFHALGQY-------KECVIDAEKIYKMDN 335 (470)
Q Consensus 305 ~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~p 335 (470)
-..+..|.|+..+++. ++|...+.++-.+..
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 4456678899999999 888888887766543
No 272
>KOG1586|consensus
Probab=98.63 E-value=2.7e-05 Score=64.46 Aligned_cols=185 Identities=20% Similarity=0.233 Sum_probs=119.9
Q ss_pred CCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CC--CCHHHHHHHHHHHHHcCChHHH
Q psy16214 18 KQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL----DP--RFSKGLIRQIKCNIALGDAPTA 91 (470)
Q Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A 91 (470)
+.|++|.++|.++- ..|...+++..|=..|.++-+. +. +-...|...+.||.+. ++++|
T Consensus 28 ~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEA 92 (288)
T ss_pred cchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHH
Confidence 46778887777763 3344444455554455444432 11 1244566667777655 89999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHH-HHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHH
Q psy16214 92 RSNLKALQELDPDNPAIAQESKALETMAKN-FEGASKAFE-ANDYRTAMFYLDRAMDQGVASK------TYKLMKAECLA 163 (470)
Q Consensus 92 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~------~~~~~~a~~~~ 163 (470)
+.++++++++..+ +|+.....+. .+.|..+-. ..++++|+.+|+++-+...... ..++..|..-.
T Consensus 93 v~cL~~aieIyt~-------~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 93 VNCLEKAIEIYTD-------MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred HHHHHHHHHHHHh-------hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 9999998875543 3333222221 122222222 2577888888888876543322 33455667777
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCh-------HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHH
Q psy16214 164 HLNRLQEAQEIANSILATDKQNP-------DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE 224 (470)
Q Consensus 164 ~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 224 (470)
.+++|.+|+..|+++....-+++ +.++.-|.|++...+.-.+...+++-.+++|.....+.
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 88999999999999988766553 34567788888889999999999999999998776554
No 273
>KOG0376|consensus
Probab=98.62 E-value=6.9e-08 Score=88.18 Aligned_cols=113 Identities=29% Similarity=0.504 Sum_probs=104.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFH 315 (470)
Q Consensus 236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (470)
.++++..+..+.++.|+..|.++|+++|+. +..+.+++.++.+.+++..|+..+.++++++|....+|++.|.+..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnc----a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNC----AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcc----eeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 455889999999999999999999999994 4559999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhc
Q psy16214 316 ALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKR 352 (470)
Q Consensus 316 ~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~ 352 (470)
.++++.+|...|++...+.|+ ..+...+.++....++
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 7788888888776654
No 274
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.61 E-value=1.5e-07 Score=76.17 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=64.4
Q ss_pred cchhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214 356 KDYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR 425 (470)
Q Consensus 356 ~~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~ 425 (470)
.+|+.++|++.. .+...+++.|+.+...+|||+....++.++..+...=..|++||.+|+||-+|+.|=-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 478999999875 7889999999999999999999988888888888899999999999999999999976
No 275
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.60 E-value=1e-07 Score=67.45 Aligned_cols=65 Identities=26% Similarity=0.440 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEK---D----PNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
.+.++.++|.++..+|++++|+.+|++++++ . |..+.++.++|.++..+|++++|+.++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567888888888888888888888888865 1 122567888888888888888888888888875
No 276
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.57 E-value=3.2e-07 Score=84.21 Aligned_cols=65 Identities=22% Similarity=0.203 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA---LSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
.+..++++|.+|..+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677788888888888888888888888888877744 788888888888888888888887776
No 277
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.56 E-value=1.4e-05 Score=63.73 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-cCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q psy16214 133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA-TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL 211 (470)
Q Consensus 133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 211 (470)
+.+..+....+.+...|.... .+.+|..+...|++.+|...|++++. +...++..+..++...+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 334444444455555554433 44577777777777777777777664 3456667777777777777777777777777
Q ss_pred HHhhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHH
Q psy16214 212 LLKLAPDH--AKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA 289 (470)
Q Consensus 212 ~l~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A 289 (470)
+.+.+|.. +.....+ |.++...|++.+|...|+.++...|. +......+..+.++|+..+|
T Consensus 150 l~e~~pa~r~pd~~Ll~------------aR~laa~g~~a~Aesafe~a~~~ypg-----~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 150 LMEYNPAFRSPDGHLLF------------ARTLAAQGKYADAESAFEVAISYYPG-----PQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HhhcCCccCCCCchHHH------------HHHHHhcCCchhHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhcchhHH
Confidence 77766642 3334444 77777777777777777777777766 33445556777777776666
Q ss_pred HHHHHHHH
Q psy16214 290 IADCTLAL 297 (470)
Q Consensus 290 ~~~~~~al 297 (470)
..-+....
T Consensus 213 ~aq~~~v~ 220 (251)
T COG4700 213 NAQYVAVV 220 (251)
T ss_pred HHHHHHHH
Confidence 55544433
No 278
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.54 E-value=1.1e-07 Score=67.27 Aligned_cols=65 Identities=28% Similarity=0.310 Sum_probs=36.5
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214 36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSL----DP---RFSKGLIRQIKCNIALGDAPTARSNLKALQE 100 (470)
Q Consensus 36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 100 (470)
+-+.++.++|.+|..+|++++|+..|++++++ .+ ....++.++|.++..+|++++|+++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455566666666666666666666666543 11 1234555666666666666666666666654
No 279
>KOG4507|consensus
Probab=98.53 E-value=9.8e-06 Score=75.74 Aligned_cols=107 Identities=18% Similarity=0.095 Sum_probs=92.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 318 (470)
|..+...|+...|+.++..|+...|.... ....++|.++.+.|-..+|-..+.+++.++...+-.++.+|++++.+.
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~---v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQD---VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhc---ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 33344568999999999999999887543 347889999999999999999999999999888999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH
Q psy16214 319 QYKECVIDAEKIYKMDNS-RENHNFLEEAKR 348 (470)
Q Consensus 319 ~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~ 348 (470)
+.+.|++.++.|++++|+ .++.+-|..+..
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999998 666666655544
No 280
>KOG1586|consensus
Probab=98.50 E-value=6.6e-05 Score=62.28 Aligned_cols=184 Identities=15% Similarity=0.112 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-----CCC-hHHHHHHHHHHhccCChHHH
Q psy16214 132 NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD-----KQN-PDAVFVRGLCLYYDDKMDLA 205 (470)
Q Consensus 132 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~-~~~~~~la~~~~~~g~~~~A 205 (470)
+.+++|.+++.++ |..|....+|+.|-..|.++-... ..+ ...+...+.+| +..++++|
T Consensus 28 ~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEA 92 (288)
T ss_pred cchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHH
Confidence 4667777666654 334444455555555554443321 111 23344444444 45599999
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhcccCccc--hHHHHHHHHHHHHH
Q psy16214 206 VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA-GKNQEAFDIYTEALKIDARNINI--NSKLLHNRATVLFK 282 (470)
Q Consensus 206 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~la~~~~~ 282 (470)
+.++++++++..+-...... ..-+.+.|.+|... .++++|+.+|+++-+....+... ....+...+..-..
T Consensus 93 v~cL~~aieIyt~~Grf~~a------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMA------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHH------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 99999999876554332211 12223347777665 89999999999998664432211 23556666777788
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 283 MGKYNEAIADCTLALEKDPNYL-------KALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 283 ~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+++|.+|+..|++.....-++. .-++.-|.|++...+.-.+...+++..+++|+
T Consensus 167 leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 9999999999999988765553 34566788999989999999999999999998
No 281
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.5e-07 Score=75.08 Aligned_cols=74 Identities=28% Similarity=0.431 Sum_probs=61.1
Q ss_pred ccchhhhccCCC---CCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcC
Q psy16214 355 VKDYYKILGVTK---NASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIME 431 (470)
Q Consensus 355 ~~~~y~~lg~~~---~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~ 431 (470)
..+.|-+||++. .+.+..|.++.++...+||||+..... ...+...|+.|..|++||||+.+|..||+...+.+
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g---~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ad 118 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG---NKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDAD 118 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC---CCCcHHHHHHHHHHHHHhccHHHHhhccccccccC
Confidence 367899999875 677899999999999999999873211 13467789999999999999999999999776554
No 282
>KOG3617|consensus
Probab=98.46 E-value=3.9e-05 Score=74.65 Aligned_cols=238 Identities=14% Similarity=0.081 Sum_probs=157.8
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH------------HHHhcCCCChHHHHHHHHH
Q psy16214 48 YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK------------ALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 48 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~------------~~l~~~p~~~~~~~~l~~~ 115 (470)
|...|+.+.|.+..+-. .....|-++|....+..+.+-|.-++- ++.+ +|++.++
T Consensus 738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e~ea------- 804 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEEDEA------- 804 (1416)
T ss_pred EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcchhh-------
Confidence 44568888887766532 234678888888888877777665543 2222 2322221
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214 116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC 195 (470)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 195 (470)
.-|....+.|..++|..+|.+.-+. -.+-.+|...|.|++|.++.+.--+++- -..|++.|.-
T Consensus 805 -------kvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~ 867 (1416)
T KOG3617|consen 805 -------KVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKY 867 (1416)
T ss_pred -------HHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccceeh--hhhHHHHHHH
Confidence 1233355667777787777775432 3456678888999999888765333221 3467888888
Q ss_pred HhccCChHHHHHHHHHH----------HhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Q psy16214 196 LYYDDKMDLAVNHFQLL----------LKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN 265 (470)
Q Consensus 196 ~~~~g~~~~A~~~~~~~----------l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 265 (470)
+...++.+.|+++|+++ +.-+|.....+....+-..+.. =-|..+...|+.+.|+.+|..|-
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~--WWgqYlES~GemdaAl~~Y~~A~------ 939 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYS--WWGQYLESVGEMDAALSFYSSAK------ 939 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHH--HHHHHHhcccchHHHHHHHHHhh------
Confidence 88889999999999875 2222322111111100000000 01777778899999999998652
Q ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
-|+.+-.+..-+|+.++|-...++ ..+..+.+.+|+.|...|++.+|+.+|.+|-...
T Consensus 940 ------D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 940 ------DYFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred ------hhhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 277778888889999998776554 5677899999999999999999999998876543
No 283
>KOG2610|consensus
Probab=98.44 E-value=9.9e-05 Score=64.61 Aligned_cols=165 Identities=10% Similarity=0.007 Sum_probs=131.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCCh---HHHHHHHHHH
Q psy16214 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT-DKQNP---DAVFVRGLCL 196 (470)
Q Consensus 121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~---~~~~~la~~~ 196 (470)
....+...+.+|+..+|-...+++++..|.+.-++..--.+++.+|+...-...+++++.. +|+-| .+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3445566778899999999999999999999888887788899999999999999999877 66553 3444566777
Q ss_pred hccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHH
Q psy16214 197 YYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNR 276 (470)
Q Consensus 197 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~l 276 (470)
...|-+++|.+.-+++++++|.+..+.... +.++...+++.++.+...+.-..-....-..+.-|..-
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~------------aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~ 253 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAK------------AHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT 253 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHH------------HHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH
Confidence 889999999999999999999988877776 88888899999999988775433222211123446777
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q psy16214 277 ATVLFKMGKYNEAIADCTLAL 297 (470)
Q Consensus 277 a~~~~~~g~~~~A~~~~~~al 297 (470)
+.++..-+.|+.|++.|..-+
T Consensus 254 Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 254 ALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhhhcccchhHHHHHHHHHH
Confidence 889999999999999998765
No 284
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.41 E-value=2.8e-06 Score=67.75 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214 248 NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK----------YNEAIADCTLALEKDPNYLKALSRRCKCFHAL 317 (470)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 317 (470)
++.|.+.++.....+|.+ +..+++-|.++..+.+ +++|+.-|++|+.++|+...+++.+|.+|..+
T Consensus 7 FE~ark~aea~y~~nP~D----adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD----ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh----HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 678899999999999995 5557777777776643 57788899999999999999999999999877
Q ss_pred CC-----------HHHHHHHHHHHHhcCCChhH
Q psy16214 318 GQ-----------YKECVIDAEKIYKMDNSREN 339 (470)
Q Consensus 318 g~-----------~~~A~~~~~~a~~~~p~~~~ 339 (470)
+. |++|..+|++|...+|+++.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 54 78999999999999998554
No 285
>KOG1914|consensus
Probab=98.38 E-value=0.0021 Score=60.20 Aligned_cols=325 Identities=9% Similarity=-0.043 Sum_probs=175.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH-HHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLI-RQIKC 81 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~la~~ 81 (470)
+.++|+.+-..+-.+ -+++..+.|++.+...|..+.+|.......+...+|+.-...|.+++..--+ ...|. .+..+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YV 96 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYV 96 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHH
Confidence 456677776665544 8888888888888888888888888888888888888888888888764322 33332 22333
Q ss_pred HHHcCChHHHHHHH----HHHHh---cCCCChHHHHHHHHHHHH---HH------HHHHHHHHHh---------------
Q psy16214 82 NIALGDAPTARSNL----KALQE---LDPDNPAIAQESKALETM---AK------NFEGASKAFE--------------- 130 (470)
Q Consensus 82 ~~~~g~~~~A~~~~----~~~l~---~~p~~~~~~~~l~~~~~~---~~------~~~~a~~~~~--------------- 130 (470)
-...++...+.+.. +-++. .++....+|......... .+ +++.....++
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 33444444444333 33332 334444455444433311 00 1111111110
Q ss_pred ---------------------cCCHHHHHHHHHHHHHh-------CCC----C-------HHHHHHHHHHHHHc------
Q psy16214 131 ---------------------ANDYRTAMFYLDRAMDQ-------GVA----S-------KTYKLMKAECLAHL------ 165 (470)
Q Consensus 131 ---------------------~~~~~~A~~~~~~~l~~-------~p~----~-------~~~~~~~a~~~~~~------ 165 (470)
...|..|...++..... +|. . .+.|.+....-...
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~ 256 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLD 256 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccc
Confidence 12334444444333221 111 0 01121111111110
Q ss_pred CC--HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC--------------hHHHHHHHHHHHhhCCC-hHHHHHHHHH
Q psy16214 166 NR--LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK--------------MDLAVNHFQLLLKLAPD-HAKAKETYKR 228 (470)
Q Consensus 166 ~~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~l~~~p~-~~~~~~~~~~ 228 (470)
|. -..-.=.+++++..-+-.+++|+..+..+...++ .+++..+|++++...-. +......+..
T Consensus 257 ~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~ 336 (656)
T KOG1914|consen 257 GTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALAD 336 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 0123345566666666677777766655555444 56777777777653221 1111111111
Q ss_pred HHHHHH--------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHH-HH
Q psy16214 229 AKLLKA--------------------------KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV-LF 281 (470)
Q Consensus 229 ~~~~~~--------------------------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~-~~ 281 (470)
...... +...-+...+..-...|...|.+|-+..-. ...++..-|.+ |.
T Consensus 337 ~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~----~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 337 YEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT----RHHVFVAAALMEYY 412 (656)
T ss_pred hHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC----cchhhHHHHHHHHH
Confidence 100000 000022222333445566666665443222 11233333332 55
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 282 KMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 282 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
..++.+-|...|+-.+...++.+..-......+..+++-..|...|++++..
T Consensus 413 cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 413 CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 6889999999999999999999999999999999999999999999999987
No 286
>KOG1585|consensus
Probab=98.38 E-value=0.00016 Score=60.46 Aligned_cols=199 Identities=16% Similarity=0.077 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF------SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE 111 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 111 (470)
+..|..-+.+|....+|++|...+.++++-..++ .+++-..+.+...+..+.++..+++++..+.-.+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~------ 104 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC------ 104 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh------
Confidence 4556666788888899999999999998654332 4567777788888889999999999987754222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----
Q psy16214 112 SKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVAS------KTYKLMKAECLAHLNRLQEAQEIANSILAT---- 181 (470)
Q Consensus 112 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---- 181 (470)
|......-.+++|-..++..++++|+.+|++++.+.... .+.+...++++.+..++.+|...+.+-...
T Consensus 105 -GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 105 -GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC 183 (308)
T ss_pred -CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence 111222224677788899999999999999998774433 245566788899999999998887764332
Q ss_pred --CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC----CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy16214 182 --DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA----PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIY 255 (470)
Q Consensus 182 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 255 (470)
.++....+.....+++...+|..|..+++.+.++. |++......+ ...+..|+.++....+
T Consensus 184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL-------------L~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL-------------LTAYDEGDIEEIKKVL 250 (308)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH-------------HHHhccCCHHHHHHHH
Confidence 33334456666677777889999999999877643 3444433332 3445667777766655
Q ss_pred H
Q psy16214 256 T 256 (470)
Q Consensus 256 ~ 256 (470)
.
T Consensus 251 ~ 251 (308)
T KOG1585|consen 251 S 251 (308)
T ss_pred c
Confidence 4
No 287
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.37 E-value=0.0041 Score=62.71 Aligned_cols=310 Identities=15% Similarity=0.093 Sum_probs=188.3
Q ss_pred cHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhcCCc--h----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---C-
Q psy16214 3 SAEKHKEDGNTQY-KLKQYSKALKCYSEAISVCPN--V----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR---F- 71 (470)
Q Consensus 3 ~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~- 71 (470)
++...+.+|..++ ...+++.|..++++++.+... . ..+.+.++.++.+.+... |+..++++++...+ .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 5677888999988 788999999999999887633 2 334456688888887777 99999999886443 2
Q ss_pred HHHHHHH--HHHHHHcCChHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214 72 SKGLIRQ--IKCNIALGDAPTARSNLKALQELDP--DNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ 147 (470)
Q Consensus 72 ~~~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 147 (470)
....+++ ...+...+++..|++.++.+..... .++.+.. +.. +..+...+..+..+++++.++++...
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v-~~~-------l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV-LAS-------LSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH-HHH-------HHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 2222222 3333334799999999999888663 4444322 111 23344456667777788888777433
Q ss_pred CC----------CCHHHHHHHH--HHHHHcCCHHHHHHHHHHH---hhc---CC---C---C-----------------h
Q psy16214 148 GV----------ASKTYKLMKA--ECLAHLNRLQEAQEIANSI---LAT---DK---Q---N-----------------P 186 (470)
Q Consensus 148 ~p----------~~~~~~~~~a--~~~~~~~~~~~A~~~~~~~---l~~---~p---~---~-----------------~ 186 (470)
.. ....++..+- .+....|++..+...+++. +.. .+ . + +
T Consensus 209 ~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~ 288 (608)
T PF10345_consen 209 ARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTP 288 (608)
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCce
Confidence 11 1223333333 3456677776666655443 211 11 0 0 0
Q ss_pred -------------HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH---------H---HHHHHH--HHHHHHHHHHHH
Q psy16214 187 -------------DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA---------K---AKETYK--RAKLLKAKKEEG 239 (470)
Q Consensus 187 -------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---------~---~~~~~~--~~~~~~~~~~~~ 239 (470)
-++..-|.+....+..++|.+++.++++.-.+.. . +..... .........-.+
T Consensus 289 ~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~ 368 (608)
T PF10345_consen 289 LVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQI 368 (608)
T ss_pred eEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1233445556667777788888888876321111 0 111111 111122223347
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccC-----ccchHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCC---
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARN-----ININSKLLHNRATVLFKMGKYNEAIADCT--------LALEKDPNY--- 303 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~--- 303 (470)
...+-.+++..|....+.+....... ....+.+++..|..+...|+.+.|+..|. .+....+.+
T Consensus 369 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ 448 (608)
T PF10345_consen 369 WCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELY 448 (608)
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHH
Confidence 77788899999999888877654322 12246788899999999999999999998 333333333
Q ss_pred HHHHHHHHHHHHHhCCHH
Q psy16214 304 LKALSRRCKCFHALGQYK 321 (470)
Q Consensus 304 ~~~~~~la~~~~~~g~~~ 321 (470)
.-+..++..++...+...
T Consensus 449 ila~LNl~~I~~~~~~~~ 466 (608)
T PF10345_consen 449 ILAALNLAIILQYESSRD 466 (608)
T ss_pred HHHHHHHHHHhHhhcccc
Confidence 334556667776655533
No 288
>KOG1308|consensus
Probab=98.34 E-value=2.7e-07 Score=80.49 Aligned_cols=100 Identities=23% Similarity=0.355 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
......+...+..|.+++||+.|..+|.++|..+..+..++.+++.+++...|+..|..+++++|+....|-..+.+...
T Consensus 115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 115 NDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL 194 (377)
T ss_pred HHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCC
Q psy16214 85 LGDAPTARSNLKALQELDPD 104 (470)
Q Consensus 85 ~g~~~~A~~~~~~~l~~~p~ 104 (470)
+|++++|...+..+.+++-+
T Consensus 195 lg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhchHHHHHHHHHHHhcccc
Confidence 99999999999999987643
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.32 E-value=0.0018 Score=60.76 Aligned_cols=168 Identities=14% Similarity=0.100 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC----CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH-HHHH
Q psy16214 150 ASKTYKLMKAECLAHLNRLQEAQEIANSILATDK----QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-KAKE 224 (470)
Q Consensus 150 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~ 224 (470)
.....+...+.+....|+++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+....... ....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4445666677777777777777777777666442 1456666677777777777777777776666222211 1000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hhcccCccchHHHHHHHHHHHHHc------CCHHHHHHHHHHH
Q psy16214 225 TYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL--KIDARNININSKLLHNRATVLFKM------GKYNEAIADCTLA 296 (470)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~a 296 (470)
. .....+-.. .+.... ..........+.++..+|...... +..++++..|.++
T Consensus 224 ~---------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a 284 (352)
T PF02259_consen 224 N---------------AELKSGLLE----SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEA 284 (352)
T ss_pred H---------------HHHhhcccc----ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 0 000000000 000000 001111222457777888877777 8899999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCH-----------------HHHHHHHHHHHhcCCC
Q psy16214 297 LEKDPNYLKALSRRCKCFHALGQY-----------------KECVIDAEKIYKMDNS 336 (470)
Q Consensus 297 l~~~p~~~~~~~~la~~~~~~g~~-----------------~~A~~~~~~a~~~~p~ 336 (470)
++++|+...+|+..|..+..+=+. ..|+..|-+++...+.
T Consensus 285 ~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 285 TKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999998887654221 3467777777777665
No 290
>KOG1585|consensus
Probab=98.28 E-value=0.00048 Score=57.74 Aligned_cols=213 Identities=12% Similarity=0.014 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214 72 SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS-KAFEANDYRTAMFYLDRAMDQGVA 150 (470)
Q Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~l~~~p~ 150 (470)
...|..-+.+|....++++|..++.++.+-..+|...++. +.. ++.|. ..-+...+.++..+++++...
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-AKa------yEqaamLake~~klsEvvdl~eKAs~l--- 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-AKA------YEQAAMLAKELSKLSEVVDLYEKASEL--- 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-HHH------HHHHHHHHHHHHHhHHHHHHHHHHHHH---
Confidence 4566777889999999999999999998766665544321 221 22222 223335566666666665433
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q psy16214 151 SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK 230 (470)
Q Consensus 151 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 230 (470)
|...|..+.|...++++-+ ....-++++|+.+|++++.+-..+.........+.
T Consensus 101 -----------Y~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g 154 (308)
T KOG1585|consen 101 -----------YVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG 154 (308)
T ss_pred -----------HHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3444444444443333322 23344555555555555554333222222111111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc--cCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH
Q psy16214 231 LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA--RNININSKLLHNRATVLFKMGKYNEAIADCTLALEK----DPNYL 304 (470)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~ 304 (470)
.. ++++.+..++.+|-..+.+-..... .+.......+.....+++...+|..|..+++..-++ .|++.
T Consensus 155 k~------sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~ 228 (308)
T KOG1585|consen 155 KC------SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS 228 (308)
T ss_pred Hh------hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH
Confidence 11 5555555555555554444322110 011112344444445555555666666666665544 23444
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Q psy16214 305 KALSRRCKCFHALGQYKECVIDA 327 (470)
Q Consensus 305 ~~~~~la~~~~~~g~~~~A~~~~ 327 (470)
.++-+|-..| ..|+.++....+
T Consensus 229 r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 229 RSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHh-ccCCHHHHHHHH
Confidence 4444444433 345555544433
No 291
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.23 E-value=3.1e-06 Score=51.88 Aligned_cols=40 Identities=23% Similarity=0.110 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214 40 YYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI 79 (470)
Q Consensus 40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 79 (470)
++..+|.+|..+|++++|+..|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444443
No 292
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.18 E-value=0.0014 Score=60.00 Aligned_cols=178 Identities=13% Similarity=0.064 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CCCChHHHHHHHHHHhc---cCChHHHHHHHHH-HHhhCCChHHH
Q psy16214 151 SKTYKLMKAECLAHLNRLQEAQEIANSILAT----DKQNPDAVFVRGLCLYY---DDKMDLAVNHFQL-LLKLAPDHAKA 222 (470)
Q Consensus 151 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~l~~~p~~~~~ 222 (470)
++.+...+-.+|....+|+.-+.+.+.+-.. .++.+.+.+..|.++.+ .|+.++|+..+.. +....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4456677778899999999999999888776 55677888899999988 8999999999999 44566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Q psy16214 223 KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL----- 297 (470)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al----- 297 (470)
+...+++..-.-. + + ........++|+..|.++..++|+.- .-.|++.++...|.-.+....+++..
T Consensus 220 ~gL~GRIyKD~~~-~-s-~~~d~~~ldkAi~~Y~kgFe~~~~~Y-----~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ 291 (374)
T PF13281_consen 220 LGLLGRIYKDLFL-E-S-NFTDRESLDKAIEWYRKGFEIEPDYY-----SGINAATLLMLAGHDFETSEELRKIGVKLSS 291 (374)
T ss_pred HHHHHHHHHHHHH-H-c-CccchHHHHHHHHHHHHHHcCCcccc-----chHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 7777444322100 0 0 01122348999999999999997631 23456666666665333222222221
Q ss_pred ---Hh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 298 ---EK----DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 298 ---~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+. .-++...+-.++.+..-.|++++|+..+++++++.|.
T Consensus 292 llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 292 LLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 11 2344667777889999999999999999999999875
No 293
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.17 E-value=5.2e-06 Score=50.89 Aligned_cols=43 Identities=21% Similarity=0.111 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC 313 (470)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (470)
.++..+|.+|..+|++++|+..|+++++.+|+++.++..+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4688899999999999999999999999999999999888753
No 294
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.16 E-value=0.011 Score=59.56 Aligned_cols=322 Identities=14% Similarity=0.062 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHhhc-CCc---hhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCC--CCH----HHHHHHHHHHHHcCCh
Q psy16214 20 YSKALKCYSEAISV-CPN---VAAYYGNRAACYM-MLGMYTYALDDAKLAVSLDP--RFS----KGLIRQIKCNIALGDA 88 (470)
Q Consensus 20 ~~~A~~~~~~al~~-~p~---~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g~~ 88 (470)
...|+.+++.+++. .+. .+.+++.+|.+++ ...+++.|..++++++.+.. +.. .+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35567888877742 222 3678899999988 68999999999999988763 333 3455678899888877
Q ss_pred HHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHH
Q psy16214 89 PTARSNLKALQELDPDN-PAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG--VASKTYK----LMKAEC 161 (470)
Q Consensus 89 ~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~----~~~a~~ 161 (470)
. |...+++.++...+. ...|...-++. .+...+..+++..|+..++.+.... +.++.+. ...+.+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll-------~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLL-------KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHH-------HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 7 999999998865542 12222222221 1112222379999999999888775 3444332 334566
Q ss_pred HHHcCCHHHHHHHHHHHhhcC------CC----ChHHHHHHHH--HHhccCChHHHHHHHHHH---HhhCCChH------
Q psy16214 162 LAHLNRLQEAQEIANSILATD------KQ----NPDAVFVRGL--CLYYDDKMDLAVNHFQLL---LKLAPDHA------ 220 (470)
Q Consensus 162 ~~~~~~~~~A~~~~~~~l~~~------p~----~~~~~~~la~--~~~~~g~~~~A~~~~~~~---l~~~p~~~------ 220 (470)
+...+..+++++.++.+.... |+ ...+|..+-. +....|++..+...+++. +....+.+
T Consensus 189 ~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~ 268 (608)
T PF10345_consen 189 HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWD 268 (608)
T ss_pred HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcC
Confidence 667787888888888774321 11 1234443333 345677766666554433 33111110
Q ss_pred --------------------HH--HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc-------Cccc---
Q psy16214 221 --------------------KA--KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR-------NINI--- 268 (470)
Q Consensus 221 --------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~--- 268 (470)
.. |.....+.. ..+.--|......+..+.|.+++.++++.-.+ .+..
T Consensus 269 ~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~-L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~ 347 (608)
T PF10345_consen 269 EDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYA-LVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLS 347 (608)
T ss_pred CCeeEEeecccccccCCCceeEEeecCHHHHHH-HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHH
Confidence 00 101111111 11112266777777777888888887743211 1110
Q ss_pred ------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16214 269 ------------NSKLLHNRATVLFKMGKYNEAIADCTLALEKD---PN------YLKALSRRCKCFHALGQYKECVIDA 327 (470)
Q Consensus 269 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~ 327 (470)
...+....+.+..-.+++..|......+.... |. .+.+++..|..+...|+.+.|...|
T Consensus 348 ~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y 427 (608)
T PF10345_consen 348 EASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQY 427 (608)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12455567888889999999998888777652 22 3778999999999999999999999
Q ss_pred H--------HHHhcCCChhH--HHHHHHHHHHh
Q psy16214 328 E--------KIYKMDNSREN--HNFLEEAKRLL 350 (470)
Q Consensus 328 ~--------~a~~~~p~~~~--~~~l~~~~~~~ 350 (470)
. .+....+..+. ...|..+-...
T Consensus 428 ~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~ 460 (608)
T PF10345_consen 428 QKPRFLLCEAANRKSKFRELYILAALNLAIILQ 460 (608)
T ss_pred hhhHHhhhhhhccCCcchHHHHHHHHHHHHHhH
Confidence 8 55555555554 33344443333
No 295
>KOG1550|consensus
Probab=98.16 E-value=0.0037 Score=61.98 Aligned_cols=284 Identities=19% Similarity=0.161 Sum_probs=194.7
Q ss_pred CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHc-----CChHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC--
Q psy16214 19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMML-----GMYTYALDDAKLAVSL-----DPRFSKGLIRQIKCNIALG-- 86 (470)
Q Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 86 (470)
+...|..+++.+.+. .+..+...+|.||..- .+.+.|+.+++.+.+. .-.++.+.+.+|.+|..-.
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888888765 4678888899998865 6899999999998771 1125668889999998853
Q ss_pred ---ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 87 ---DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA 163 (470)
Q Consensus 87 ---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 163 (470)
+...|..+|.++-... ++.+...++.++.... ...++..|..+|..+... ....+.+.++.||.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~---------~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT---------KERDYRRAFEYYSLAAKA--GHILAIYRLALCYE 371 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC---------ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence 6788999999988765 4555666666643321 225678899999888765 45667777888876
Q ss_pred Hc----CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc-CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214 164 HL----NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238 (470)
Q Consensus 164 ~~----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 238 (470)
.- .+...|..++.++...+ ++.+.+.++.++... +.++.+...+.....+--+........ +. ..
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~--l~------~~ 441 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAY--LL------DQ 441 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHH--HH------Hh
Confidence 53 57889999999999877 556566666555332 777777766655544433222211111 00 00
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214 239 GNEKFV----AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM----GKYNEAIADCTLALEKDPNYLKALSRR 310 (470)
Q Consensus 239 ~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (470)
...... ..+...+...+.++.... +..+...+|.+|..- .+++.|...|.++.... +...+++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g------~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nl 512 (552)
T KOG1550|consen 442 SEEDLFSRGVISTLERAFSLYSRAAAQG------NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNL 512 (552)
T ss_pred ccccccccccccchhHHHHHHHHHHhcc------CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhh
Confidence 101111 125566777777665443 235677888887754 36999999999998877 8999999
Q ss_pred HHHHHHh---CCHHHHHHHHHHHHhcCCC
Q psy16214 311 CKCFHAL---GQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 311 a~~~~~~---g~~~~A~~~~~~a~~~~p~ 336 (470)
|.++..- .....|.++|.++.+.+..
T Consensus 513 g~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 513 GYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred hhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 9999742 2278999999999987764
No 296
>KOG1150|consensus
Probab=98.16 E-value=1.1e-05 Score=64.23 Aligned_cols=66 Identities=29% Similarity=0.526 Sum_probs=57.6
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR 425 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~ 425 (470)
-+-|.+|.+....+.++|++.||++++.-||||+++ +.+.|.+.|-.+..||..|-|+..|.+-+.
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~D----d~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPD----DAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcc----cHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 356899999999999999999999999999999987 345788999999999999999986655443
No 297
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.14 E-value=0.00013 Score=65.60 Aligned_cols=136 Identities=13% Similarity=0.074 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc-cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q psy16214 154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY-DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL 232 (470)
Q Consensus 154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 232 (470)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y------ 76 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEY------ 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHH------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHH------
Confidence 455555666666667777777777776555667777777777555 4555557777777777777777777766
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (470)
...+...++.+.|..+|++++..-|.... ...+|......-...|+.+....+.+++.+..|.
T Consensus 77 ------~~~l~~~~d~~~aR~lfer~i~~l~~~~~-~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 77 ------LDFLIKLNDINNARALFERAISSLPKEKQ-SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp ------HHHHHHTT-HHHHHHHHHHHCCTSSCHHH-CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred ------HHHHHHhCcHHHHHHHHHHHHHhcCchhH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 66667777777777777777766554321 1234444455555555555555555555555544
No 298
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.12 E-value=0.00035 Score=56.15 Aligned_cols=95 Identities=25% Similarity=0.284 Sum_probs=74.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccCcc------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 238 EGNEKFVAGKNQEAFDIYTEALKIDARNIN------------------INSKLLHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
.+......++.+.++..+.+++.+...+.- ....+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 366667788999999999999976532110 02355667788889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 300 DPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 300 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
+|.+-.++..+..+|...|+..+|+..|+++..
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998854
No 299
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.12 E-value=0.0005 Score=63.88 Aligned_cols=190 Identities=16% Similarity=0.069 Sum_probs=119.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------------------
Q psy16214 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR-------------------- 70 (470)
Q Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------------- 70 (470)
-....+..+...-++.-.+|++++|+.+.+|..+|.-. .....+|...++++++....
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR 252 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence 34456788999999999999999999999998887632 22345666666666553110
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16214 71 -----FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN--PAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDR 143 (470)
Q Consensus 71 -----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 143 (470)
...+..++|.|..++|+.++|++.++.+++..|.. ..+...+... +++.+.|.++...+.+
T Consensus 253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~------------LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA------------LLELQAYADVQALLAK 320 (539)
T ss_pred cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH------------HHhcCCHHHHHHHHHH
Confidence 13355678999999999999999999999877752 3344444433 5666777777766666
Q ss_pred HHHh-CCCCHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHhhcCCCChHHHHHHHH------HHhccC
Q psy16214 144 AMDQ-GVASKTYKLMKAECLAHL-NR---------------LQEAQEIANSILATDKQNPDAVFVRGL------CLYYDD 200 (470)
Q Consensus 144 ~l~~-~p~~~~~~~~~a~~~~~~-~~---------------~~~A~~~~~~~l~~~p~~~~~~~~la~------~~~~~g 200 (470)
.-++ -|.+..+.+..|.+-.+. ++ -..|++.+.++++.+|..+..+..+=. -..+.|
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrG 400 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRG 400 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCC
Confidence 5333 245555555444433221 11 123667788888888877765443221 123445
Q ss_pred ChHHHHHHHHHHHhh
Q psy16214 201 KMDLAVNHFQLLLKL 215 (470)
Q Consensus 201 ~~~~A~~~~~~~l~~ 215 (470)
+ .+|+.+---.+..
T Consensus 401 D-SEAiaYAf~hL~h 414 (539)
T PF04184_consen 401 D-SEAIAYAFFHLQH 414 (539)
T ss_pred c-HHHHHHHHHHHHH
Confidence 4 5666655444443
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.12 E-value=3.2e-06 Score=48.19 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=27.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16214 293 CTLALEKDPNYLKALSRRCKCFHALGQYKECV 324 (470)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 324 (470)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888875
No 301
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.11 E-value=0.00053 Score=63.73 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=74.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH-
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK-DPNYLKALSRRCKCFHA- 316 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~- 316 (470)
+.+..+.|+.++|++.++..++..|... ...++.++..+++.++.|.++...+.+.-++ -|+.+...+..|.+..+
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~--~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLD--NLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccc--hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 8899999999999999999998877533 3468999999999999999999999886544 36666666666554433
Q ss_pred hCC---------------HHHHHHHHHHHHhcCCC
Q psy16214 317 LGQ---------------YKECVIDAEKIYKMDNS 336 (470)
Q Consensus 317 ~g~---------------~~~A~~~~~~a~~~~p~ 336 (470)
.++ -..|++.+.+|++.+|-
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 121 23577889999999985
No 302
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.09 E-value=0.0064 Score=54.67 Aligned_cols=233 Identities=13% Similarity=0.063 Sum_probs=144.4
Q ss_pred HHcCChHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhC----C---CC--
Q psy16214 83 IALGDAPTARSNLKALQELD-PDNPAIAQESKALETMAKNFEGASKAFEAN-DYRTAMFYLDRAMDQG----V---AS-- 151 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~----p---~~-- 151 (470)
...|+.+.|..++.++-... ..++.....++.+. +.-+...+..+ +++.|+.+++++.+.- + ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~-----yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC-----YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 46788899999998887766 55666666666663 55666688888 9999999999998772 1 11
Q ss_pred -----HHHHHHHHHHHHHcCCHH---HHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC-ChHHH
Q psy16214 152 -----KTYKLMKAECLAHLNRLQ---EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP-DHAKA 222 (470)
Q Consensus 152 -----~~~~~~~a~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~ 222 (470)
..++..++.++...+.++ +|...++.+-...|+.+..+...-.+....++.+.+...+.+++..-+ .....
T Consensus 79 ~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~ 158 (278)
T PF08631_consen 79 GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH
Confidence 245677888998887754 566666677777888888887666777778999999999999987654 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cccCccchHHHHHHHHHHHHHcCCHHHH--HHHHHHHHH
Q psy16214 223 KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI--DARNININSKLLHNRATVLFKMGKYNEA--IADCTLALE 298 (470)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~~al~ 298 (470)
...+. ..-.+.......|...+...+.. .|........+...+-......++.... ++.....+.
T Consensus 159 ~~~l~-----------~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~ 227 (278)
T PF08631_consen 159 DSILH-----------HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLS 227 (278)
T ss_pred HHHHH-----------HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHH
Confidence 22221 11112223456677777776643 2221101112222222222222222222 333322222
Q ss_pred ----h--CCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16214 299 ----K--DPNY-------LKALSRRCKCFHALGQYKECVIDAEKIY 331 (470)
Q Consensus 299 ----~--~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~ 331 (470)
. .|-. ...+.+.|...++.++|++|..+|+-++
T Consensus 228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1 2222 2346677999999999999999999776
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.09 E-value=3.6e-06 Score=47.97 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=17.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214 61 AKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR 92 (470)
Q Consensus 61 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 92 (470)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 304
>KOG2300|consensus
Probab=98.08 E-value=0.009 Score=55.40 Aligned_cols=324 Identities=14% Similarity=0.073 Sum_probs=188.5
Q ss_pred hHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCC---HHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214 38 AAYYGNRAACYMMLG--MYTYALDDAKLAVSLDPRF---SKGLIRQIKCN-IALGDAPTARSNLKALQELDPDNPAIAQE 111 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 111 (470)
+.++..+|..+...+ +...++++++......|.+ +..+..+|.++ ....+.+.|...++++..+...-+..+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 456677778888888 7888888888888877765 44566676654 45778888998888888765544433221
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCC
Q psy16214 112 SKALETMAKNFEGASKAFEA-NDYRTAMFYLDRAMDQGVASKT----YKLMKAECLAHLNRLQEAQEIANSILAT-DKQN 185 (470)
Q Consensus 112 l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~ 185 (470)
.-..+.. .+..+... ..+..+...+.+++++....+. ..+.++.++....++..|++.+.-.... ++..
T Consensus 87 Kf~a~Sl-----La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~ 161 (629)
T KOG2300|consen 87 KFQAASL-----LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHIC 161 (629)
T ss_pred hhHHHHH-----HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhh
Confidence 1111111 11112222 2677778888888888766653 4566888888888999888875432211 1111
Q ss_pred ---hHHHHHH--HHHHhccCC---hHHHHHHHHHHHhhCCChHHHHHH-------------------------HHHHHHH
Q psy16214 186 ---PDAVFVR--GLCLYYDDK---MDLAVNHFQLLLKLAPDHAKAKET-------------------------YKRAKLL 232 (470)
Q Consensus 186 ---~~~~~~l--a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~-------------------------~~~~~~~ 232 (470)
..+.+.+ +.++...-+ ...+.....+..+....++.-... ++++...
T Consensus 162 ~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~s 241 (629)
T KOG2300|consen 162 FPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDS 241 (629)
T ss_pred hHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHH
Confidence 1111111 222222222 222233233333222111111110 0000000
Q ss_pred HHHH-----------------------HH----HHHH-------HhcCCHHHHHHHHHHHHhhcccCcc----------c
Q psy16214 233 KAKK-----------------------EE----GNEK-------FVAGKNQEAFDIYTEALKIDARNIN----------I 268 (470)
Q Consensus 233 ~~~~-----------------------~~----~~~~-------~~~~~~~~A~~~~~~al~~~p~~~~----------~ 268 (470)
.... -+ +.+| ...|-+++|.++-++++......+. .
T Consensus 242 iqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~ 321 (629)
T KOG2300|consen 242 IQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMF 321 (629)
T ss_pred HhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 0000 00 1111 2346677888877777754222111 1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChh
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEK---DPN-------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE 338 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 338 (470)
....+-++..|-.-.|++.+|++....+.+. .|. .+..++.+|......+.++.|...|..|.++-.+.+
T Consensus 322 km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~d 401 (629)
T KOG2300|consen 322 KMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESID 401 (629)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHH
Confidence 2345667788888999999999888777664 454 256777888888889999999999999999887755
Q ss_pred HHH--HHHHHHHHhhcccccchhhhccCCC
Q psy16214 339 NHN--FLEEAKRLLKRSEVKDYYKILGVTK 366 (470)
Q Consensus 339 ~~~--~l~~~~~~~~~~~~~~~y~~lg~~~ 366 (470)
... .+.-+...+...+..++|++|..-.
T Consensus 402 l~a~~nlnlAi~YL~~~~~ed~y~~ld~i~ 431 (629)
T KOG2300|consen 402 LQAFCNLNLAISYLRIGDAEDLYKALDLIG 431 (629)
T ss_pred HHHHHHHhHHHHHHHhccHHHHHHHHHhcC
Confidence 543 3445566677778888998887543
No 305
>KOG1258|consensus
Probab=98.07 E-value=0.012 Score=56.31 Aligned_cols=56 Identities=16% Similarity=0.082 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q psy16214 21 SKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLI 76 (470)
Q Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (470)
+.+...|...+...|.....|...|..-.++|..+.+++.|++++.--|.....|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~ 117 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWL 117 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44445555566666666666666666666666666666666666666555444443
No 306
>KOG0530|consensus
Probab=98.07 E-value=0.002 Score=54.69 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChH-HHHHHHHH
Q psy16214 134 YRTAMFYLDRAMDQGVASKTYKLMKAECLAHL-NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMD-LAVNHFQL 211 (470)
Q Consensus 134 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~ 211 (470)
-..|+.+...++..+|.+-.+|..+-.++..+ .+..+-++++..++..+|.+..+|..+-.+....|++. .-+...+.
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 34566666777777777777776666666554 35667778888888888888888888888887778777 77778888
Q ss_pred HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH-cC-----C
Q psy16214 212 LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK-MG-----K 285 (470)
Q Consensus 212 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~-~g-----~ 285 (470)
++..+..+.-+|... -.+...-+.++.-+.+..+.++.+-.|. .+|..+--+... .| .
T Consensus 139 ~l~~DaKNYHaWshR------------qW~~r~F~~~~~EL~y~~~Lle~Di~NN----SAWN~Ryfvi~~~~~~~~~~~ 202 (318)
T KOG0530|consen 139 MLDDDAKNYHAWSHR------------QWVLRFFKDYEDELAYADELLEEDIRNN----SAWNQRYFVITNTKGVISKAE 202 (318)
T ss_pred HHhccccchhhhHHH------------HHHHHHHhhHHHHHHHHHHHHHHhhhcc----chhheeeEEEEeccCCccHHH
Confidence 888887777777766 5555566667777777777777655432 223332211111 11 2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 286 YNEAIADCTLALEKDPNYLKALSRRCKCFHA 316 (470)
Q Consensus 286 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 316 (470)
.+.-+.+..+.|.+.|++..+|..+.-++..
T Consensus 203 le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 203 LERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 3445677778888899998888888777775
No 307
>KOG2610|consensus
Probab=98.06 E-value=0.00095 Score=58.66 Aligned_cols=159 Identities=15% Similarity=0.027 Sum_probs=130.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhh-CCChH---HHHHHHHHHHHH
Q psy16214 157 MKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL-APDHA---KAKETYKRAKLL 232 (470)
Q Consensus 157 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~---~~~~~~~~~~~~ 232 (470)
..+-++...|++.+|....+++++..|.+.-++..--.+++.+|+...-...+++++.. +|+-| .+.-.+
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmy------ 181 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMY------ 181 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHH------
Confidence 34566778899999999999999999999998888888999999999999999999987 55543 333334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH
Q psy16214 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY----LKALS 308 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~ 308 (470)
+-.+...|-|++|.+.-+++++++|. ..++...++.++...+++.++.+...+.-..-... ..-|.
T Consensus 182 ------aFgL~E~g~y~dAEk~A~ralqiN~~----D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW 251 (491)
T KOG2610|consen 182 ------AFGLEECGIYDDAEKQADRALQINRF----DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW 251 (491)
T ss_pred ------HhhHHHhccchhHHHHHHhhccCCCc----chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence 77788899999999999999999999 56788889999999999999999887643321111 33456
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Q psy16214 309 RRCKCFHALGQYKECVIDAEKIY 331 (470)
Q Consensus 309 ~la~~~~~~g~~~~A~~~~~~a~ 331 (470)
..|.+++.-+.|+.|++.|.+-+
T Consensus 252 H~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 252 HTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHhhhcccchhHHHHHHHHHH
Confidence 67889999999999999998654
No 308
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.03 E-value=0.00027 Score=63.43 Aligned_cols=138 Identities=10% Similarity=0.025 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCH
Q psy16214 74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE-ANDYRTAMFYLDRAMDQGVASK 152 (470)
Q Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~ 152 (470)
+|..+.....+.+..+.|..+|.++++..+....++...+.+ -+. .++.+.|..+|+.+++..|.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~------------E~~~~~d~~~A~~Ife~glk~f~~~~ 70 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALM------------EYYCNKDPKRARKIFERGLKKFPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHH------------HHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHH------------HHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence 455555666666667777777777765444445554333332 233 4555557777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh---HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNP---DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK 223 (470)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 223 (470)
.+|......+...++.+.|..+|++++..-|... .+|......-...|+.+...++.+++.+..|+.....
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 7888888888889999999999999988766554 5777777777888999999999999999888855443
No 309
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.00 E-value=0.013 Score=58.58 Aligned_cols=246 Identities=13% Similarity=0.019 Sum_probs=157.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN---------VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-- 71 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-- 71 (470)
++..-...+.......++.+|..+..++...-|. .+......|.+....|++++|+...+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4555667788899999999999999888765433 24566678889999999999999999999987764
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH--HHHHH----
Q psy16214 72 ---SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTA--MFYLD---- 142 (470)
Q Consensus 72 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A--~~~~~---- 142 (470)
..++..+|.+..-.|++++|..+...+.+........+. ........+..+..+|+...+ ...+.
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l------~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~ 567 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHL------ALWSLLQQSEILEAQGQVARAEQEKAFNLIRE 567 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999988876433222111 111224445555666632222 22222
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC----CCC--hH-HHHHHHHHHhccCChHHHHHHHHHHHhh
Q psy16214 143 RAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD----KQN--PD-AVFVRGLCLYYDDKMDLAVNHFQLLLKL 215 (470)
Q Consensus 143 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~ 215 (470)
+-+...|........++.++..--+++.+.......++.. |.. +. +++.++.+.+..|+.++|...+..+..+
T Consensus 568 q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 568 QHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2223344444444445555554444676666666655442 222 22 2347899999999999999999988775
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214 216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL 259 (470)
Q Consensus 216 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 259 (470)
-.....-......+..+ .......+|+...|.....+..
T Consensus 648 ~~~~~~~~~~~a~~~~v-----~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 648 LLNGQYHVDYLAAAYKV-----KLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred hcCCCCCchHHHHHHHh-----hHHHhcccCCHHHHHHHHHhcc
Confidence 43331111111111111 2455567788888888877743
No 310
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.99 E-value=1.4e-05 Score=45.79 Aligned_cols=32 Identities=31% Similarity=0.563 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPN 36 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 36 (470)
+.|+.+|.+++..|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555543
No 311
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.98 E-value=0.0057 Score=56.17 Aligned_cols=186 Identities=12% Similarity=-0.029 Sum_probs=133.6
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHH-HHhcCCCChHH
Q psy16214 37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSL----DPRFSKGLIRQIKCNIA---LGDAPTARSNLKA-LQELDPDNPAI 108 (470)
Q Consensus 37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~l~~~p~~~~~ 108 (470)
+++...++=.+|....+|+.-+...+..-.+ -++.+...+.+|.++-+ .|+.++|+..+.. +....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4677788888999999999999999887766 45567788899999999 9999999999999 55667788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--------h
Q psy16214 109 AQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL--------A 180 (470)
Q Consensus 109 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l--------~ 180 (470)
+..+|.++...- ..+ ..-.....++|+..|.++....|+. ..=.+++.++...|.-.+....+.++. +
T Consensus 220 ~gL~GRIyKD~~--~~s-~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 220 LGLLGRIYKDLF--LES-NFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHHHHHHHH--HHc-CccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 999999976541 111 0112334899999999999999654 334456667776665433332222221 1
Q ss_pred c----CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 181 T----DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 181 ~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
. .-.+...+-.++.+....|++++|+..+++++++.|........+
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH
Confidence 1 112334455667777889999999999999999987765544333
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.98 E-value=0.002 Score=52.38 Aligned_cols=105 Identities=19% Similarity=0.105 Sum_probs=82.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA 316 (470)
Q Consensus 237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 316 (470)
..+..+...+++++|+..++.++.... +..+.+.+-.+++.+...+|.+++|+..+...... .-.+..-..+|.++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTK-DENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHH
Confidence 348889999999999999999886543 33335677888999999999999999988764321 1123446678999999
Q ss_pred hCCHHHHHHHHHHHHhcCCChhHHHHH
Q psy16214 317 LGQYKECVIDAEKIYKMDNSRENHNFL 343 (470)
Q Consensus 317 ~g~~~~A~~~~~~a~~~~p~~~~~~~l 343 (470)
.|+.++|+..|+++++..+++...+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~~~~~~l 198 (207)
T COG2976 172 KGDKQEARAAYEKALESDASPAAREIL 198 (207)
T ss_pred cCchHHHHHHHHHHHHccCChHHHHHH
Confidence 999999999999999998776655555
No 313
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.96 E-value=0.00029 Score=56.67 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----------------------hHHHHHHHHHHHHcCChHHHHHHHHH
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----------------------AAYYGNRAACYMMLGMYTYALDDAKL 63 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~g~~~~A~~~~~~ 63 (470)
.+...|......++...++..+.+++.+.... ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44556777788899999999999999874221 34556677788899999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE 100 (470)
Q Consensus 64 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 100 (470)
++..+|.+..++..+..+|...|+...|+..|.++..
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.96 E-value=1.9e-05 Score=45.31 Aligned_cols=31 Identities=35% Similarity=0.561 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214 272 LLHNRATVLFKMGKYNEAIADCTLALEKDPN 302 (470)
Q Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (470)
+|+++|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555554
No 315
>KOG3616|consensus
Probab=97.95 E-value=0.0043 Score=60.32 Aligned_cols=33 Identities=6% Similarity=0.106 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 302 NYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 302 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
..+.++..++..+...|++++|.+.|-.+++++
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 346778889999999999999999999998875
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.94 E-value=0.018 Score=53.98 Aligned_cols=270 Identities=17% Similarity=0.050 Sum_probs=151.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH
Q psy16214 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--------DPRFSKGLIRQIKCN 82 (470)
Q Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~ 82 (470)
+.+..+.|+|+.-.++.... ..+.+...+..+...+..++++++...++++... .+......+..-.-+
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~---~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQS---NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHhcCChhhHHHHHhhc---cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 56778889999833332222 1223466777777888999999999988887664 122222222222222
Q ss_pred HHcCChHHHHHHHH-----------------HHHhcCCCChHHHHHHHHHHHH------------HHHHHHHHHHHhcCC
Q psy16214 83 IALGDAPTARSNLK-----------------ALQELDPDNPAIAQESKALETM------------AKNFEGASKAFEAND 133 (470)
Q Consensus 83 ~~~g~~~~A~~~~~-----------------~~l~~~p~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~ 133 (470)
..+.+.+++..... .=+...+++...+..+-.+... ......|....+.|.
T Consensus 82 q~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~ 161 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGN 161 (352)
T ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCC
Confidence 22334444444331 1122234455555443333221 123445566677899
Q ss_pred HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-C--hHHHHHHHHHHhccCChHHHH
Q psy16214 134 YRTAMFYLDRAMDQGV----ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ-N--PDAVFVRGLCLYYDDKMDLAV 206 (470)
Q Consensus 134 ~~~A~~~~~~~l~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~--~~~~~~la~~~~~~g~~~~A~ 206 (470)
++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+..... . +.....+......
T Consensus 162 ~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 233 (352)
T PF02259_consen 162 FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE-------- 233 (352)
T ss_pred cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc--------
Confidence 9999999999988652 25678888999999999999999999998873221 1 1111111100000
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHH
Q psy16214 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA------GKNQEAFDIYTEALKIDARNININSKLLHNRATVL 280 (470)
Q Consensus 207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~ 280 (470)
.+........ ........ ...+...|...... +..++++..|.+++..+|. ...+|...|..+
T Consensus 234 -~~~~~~~~~~-~~~~~~~~-----a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~k~~~~~a~~~ 302 (352)
T PF02259_consen 234 -SLEVISSTNL-DKESKELK-----AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS----WEKAWHSWALFN 302 (352)
T ss_pred -ccccccccch-hhhhHHHH-----HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh----HHHHHHHHHHHH
Confidence 0000000000 00000000 01111124444444 8889999999999999998 456788777766
Q ss_pred HHcCC-----------------HHHHHHHHHHHHHhCCC
Q psy16214 281 FKMGK-----------------YNEAIADCTLALEKDPN 302 (470)
Q Consensus 281 ~~~g~-----------------~~~A~~~~~~al~~~p~ 302 (470)
...=+ ...|+..|-+++...+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 54421 13477777788877776
No 317
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.92 E-value=2.2e-05 Score=45.01 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPN 36 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 36 (470)
+.|+.+|.+++..|+|++|+.+|++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 44555555555555555555555555555554
No 318
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.92 E-value=0.00099 Score=64.39 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=117.3
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH--H--hcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA--F--EANDYRTAMFYLDRAMDQGVASKTYKLMKA 159 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~--~--~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 159 (470)
-.||-+.++..+.++.+ .++-......+.-+. .+.-.... . .....+.|...+.......|+..-.++..|
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~----y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g 274 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLW----YHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG 274 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHH----HHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 35888999999998876 222222111111110 01000111 1 456788999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH
Q psy16214 160 ECLAHLNRLQEAQEIANSILATDKQN----PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK 235 (470)
Q Consensus 160 ~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 235 (470)
+++...|+.++|++.+++++.....- .-.++.++.++..+.+|++|..++.++.+.+.-+...+..+
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~--------- 345 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL--------- 345 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH---------
Confidence 99999999999999999988543332 23688999999999999999999999999766655444433
Q ss_pred HHHHHHHHhcCCH-------HHHHHHHHHHHhh
Q psy16214 236 KEEGNEKFVAGKN-------QEAFDIYTEALKI 261 (470)
Q Consensus 236 ~~~~~~~~~~~~~-------~~A~~~~~~al~~ 261 (470)
.|.++...++. ++|.+++.++-..
T Consensus 346 --~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 346 --AAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred --HHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 37888888888 7777777776543
No 319
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0013 Score=57.07 Aligned_cols=151 Identities=19% Similarity=0.076 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALET 117 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 117 (470)
...-+..+.-....|++.+|...+..++...|.+..+...++.||...|+.+.|...+...-....+. ......+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a---- 208 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQA---- 208 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHH----
Confidence 44456667788889999999999999999999999999999999999999999988887643222111 1111011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--ChHHHHHHHHH
Q psy16214 118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ--NPDAVFVRGLC 195 (470)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~ 195 (470)
+.+.....-..++. ..+.+.+..+|++..+.+.+|..+...|+.++|++.+-..++.+.. +..+...+-.+
T Consensus 209 ---~i~ll~qaa~~~~~----~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~ 281 (304)
T COG3118 209 ---QIELLEQAAATPEI----QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLEL 281 (304)
T ss_pred ---HHHHHHHHhcCCCH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 11111112222222 2345667778999999999999999999999999999888876543 33344444444
Q ss_pred HhccC
Q psy16214 196 LYYDD 200 (470)
Q Consensus 196 ~~~~g 200 (470)
+...|
T Consensus 282 f~~~g 286 (304)
T COG3118 282 FEAFG 286 (304)
T ss_pred HHhcC
Confidence 44444
No 320
>KOG0530|consensus
Probab=97.88 E-value=0.012 Score=50.12 Aligned_cols=182 Identities=13% Similarity=0.025 Sum_probs=128.6
Q ss_pred HhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH-HHH
Q psy16214 15 YKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP-TAR 92 (470)
Q Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~ 92 (470)
.....-..|+.+-..+|.++|.+..+|..+-.++..++ +..+-++.+..+++-+|.+...|...-.+...+|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 34456689999999999999999999988888887765 6778889999999999999999999999999999988 888
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hc------------------------CCHHHHHHHHHHH
Q psy16214 93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF----EA------------------------NDYRTAMFYLDRA 144 (470)
Q Consensus 93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~----~~------------------------~~~~~A~~~~~~~ 144 (470)
+....++..+.+|-.+|.....+....+.++.-..+. .. -..+.-+.+..+.
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~ 213 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDK 213 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHH
Confidence 9999999999999999888777766655554433321 11 1233445566667
Q ss_pred HHhCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHh-hcCCCChHHHHHHHHHH
Q psy16214 145 MDQGVASKTYKLMKAECLAH-LN--RLQEAQEIANSIL-ATDKQNPDAVFVRGLCL 196 (470)
Q Consensus 145 l~~~p~~~~~~~~~a~~~~~-~~--~~~~A~~~~~~~l-~~~p~~~~~~~~la~~~ 196 (470)
+...|++..+|..+.-++.. .| .+.+.......++ .....+|..+-.+..++
T Consensus 214 I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 214 ILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 77777777777776666664 33 2334444444443 22233344444444333
No 321
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.87 E-value=0.022 Score=52.55 Aligned_cols=141 Identities=11% Similarity=0.017 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVA-----AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
+.-.|-.+.+++++.+|...|.++.+...+.+ +++.++-...+-+.+.+.-...+...-+..|+.+....-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 45678899999999999999999987654442 4455555555566777766666666667788888888889999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChHHHHHHH--HH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214 82 NIALGDAPTARSNLKALQELDPDNPAIAQESK--AL-ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ 147 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 147 (470)
.++.+.+.+|++.+....+.-......+.... .+ ....-..-.|..+++.|.+.++...+++.+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999999998876654222222221111 10 01111234566778889999998888887754
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.86 E-value=4.7e-05 Score=43.59 Aligned_cols=31 Identities=35% Similarity=0.502 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214 272 LLHNRATVLFKMGKYNEAIADCTLALEKDPN 302 (470)
Q Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (470)
+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 323
>KOG0985|consensus
Probab=97.85 E-value=0.026 Score=57.24 Aligned_cols=238 Identities=13% Similarity=0.040 Sum_probs=126.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q psy16214 10 DGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP 89 (470)
Q Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 89 (470)
.|......+-|++|...|.+. ..+ ..+. -...-..+..+.|.++.+++ +.+..|..+|.+..+.|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf-~~n---~~A~---~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-DMN---VSAI---QVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh-ccc---HHHH---HHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 456666667777777777653 111 1111 11112345555555555554 34667777777777777777
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------------
Q psy16214 90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ---------------------- 147 (470)
Q Consensus 90 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------------------- 147 (470)
+|++.|-++ +++..+.....+. -+.|.|++-+.++.-+.+.
T Consensus 1122 dAieSyika-----dDps~y~eVi~~a------------~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVA------------SRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHHHHHhc-----CCcHHHHHHHHHH------------HhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHH
Confidence 777777665 3444443333332 2234444444443333222
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHH
Q psy16214 148 ------GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK 221 (470)
Q Consensus 148 ------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 221 (470)
.|+...+ ...|.-++..+.|+.|.-+|.. ..-|-.++..+..+|+|..|...-+++-. ..
T Consensus 1185 lE~fi~gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns-----~k 1250 (1666)
T KOG0985|consen 1185 LEEFIAGPNVANI-QQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANS-----TK 1250 (1666)
T ss_pred HHHHhcCCCchhH-HHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccc-----hh
Confidence 2333222 2245555555556555555543 23456677777777888877777766533 22
Q ss_pred HHHHHHHHH------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc
Q psy16214 222 AKETYKRAK------------------LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM 283 (470)
Q Consensus 222 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~ 283 (470)
.|....... -....-+....|...|-+++-+.+++.++-+... ....+..+|.+|.+-
T Consensus 1251 tWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA----HMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA----HMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH----HHHHHHHHHHHHHhc
Confidence 222211110 1223334456667777788888888877776655 334466667666543
Q ss_pred CCHHHHHHHHHH
Q psy16214 284 GKYNEAIADCTL 295 (470)
Q Consensus 284 g~~~~A~~~~~~ 295 (470)
++++-.++++-
T Consensus 1327 -kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1327 -KPEKMMEHLKL 1337 (1666)
T ss_pred -CHHHHHHHHHH
Confidence 35555555543
No 324
>KOG4507|consensus
Probab=97.83 E-value=0.0056 Score=58.01 Aligned_cols=99 Identities=11% Similarity=-0.037 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNV--AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL 85 (470)
Q Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 85 (470)
..-+-.+..+|+..+|+.++..++-..|.. ..++..+|.++.+.|...+|--.+..|+.-.|....-++-++.++..+
T Consensus 217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml 296 (886)
T KOG4507|consen 217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAML 296 (886)
T ss_pred HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHH
Confidence 333444556899999999999999887654 457889999999999999999999999988887777799999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCh
Q psy16214 86 GDAPTARSNLKALQELDPDNP 106 (470)
Q Consensus 86 g~~~~A~~~~~~~l~~~p~~~ 106 (470)
+++.....+|..+.+..|...
T Consensus 297 ~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 297 GEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred hhhhhhhhhhhhhhccCcchh
Confidence 999999999999998888654
No 325
>KOG0985|consensus
Probab=97.81 E-value=0.015 Score=58.81 Aligned_cols=244 Identities=13% Similarity=0.056 Sum_probs=144.2
Q ss_pred hcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16214 16 KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL 95 (470)
Q Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 95 (470)
..++.+.|.++-+++ +.+..|..+|.+.+..|...+|++.|-++ +++..|.....+..+.|.|++-+.++
T Consensus 1087 ~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 346667777766665 45778888888888888888888888654 45667777777888888888888887
Q ss_pred HHHHhcCCC---ChHHHHHHHHHHHHH------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214 96 KALQELDPD---NPAIAQESKALETMA------------KNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAE 160 (470)
Q Consensus 96 ~~~l~~~p~---~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 160 (470)
.-+-+.... +.+....++...... .--.-+..+++.+.|+.|.-+|... .-+..+|.
T Consensus 1157 ~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~ 1228 (1666)
T KOG0985|consen 1157 LMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLAS 1228 (1666)
T ss_pred HHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHH
Confidence 776653221 112222222211100 0112234566777787777666543 44667888
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCC-------------------------CChHHHHHHHHHHhccCChHHHHHHHHHHHhh
Q psy16214 161 CLAHLNRLQEAQEIANSILATDK-------------------------QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL 215 (470)
Q Consensus 161 ~~~~~~~~~~A~~~~~~~l~~~p-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 215 (470)
.+..+|+|+.|....+++-.... -+++-+-.+...|...|-+++-+..++.++-+
T Consensus 1229 TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 99999999999988887632100 01222334445556667777777777777666
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--ccCcc--chHHHHHHHHHHHHHcCCHHHHH
Q psy16214 216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID--ARNIN--INSKLLHNRATVLFKMGKYNEAI 290 (470)
Q Consensus 216 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~--~~~~~~~~la~~~~~~g~~~~A~ 290 (470)
...+......+ |..|. .=++++-.++++-....- |.-.. -.+.+|..+--+|.+-..|+.|.
T Consensus 1309 ERAHMgmfTEL------------aiLYs-kykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1309 ERAHMGMFTEL------------AILYS-KYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred hHHHHHHHHHH------------HHHHH-hcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 55444433333 44443 344555555554433211 11000 03466777777777777777663
No 326
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.75 E-value=0.029 Score=50.48 Aligned_cols=155 Identities=16% Similarity=0.069 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CChHHHHHHHHH-HhccCChHHHHHHHH
Q psy16214 133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK-QNPDAVFVRGLC-LYYDDKMDLAVNHFQ 210 (470)
Q Consensus 133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~-~~~~g~~~~A~~~~~ 210 (470)
..++|...++.+....|+.+.++...-.++...++.+++.+.+.+++..-+ .....-..+..+ .........|...+.
T Consensus 102 ~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld 181 (278)
T PF08631_consen 102 SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLD 181 (278)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 345677777777788899888887777888888999999999999988654 222221112222 122344566777776
Q ss_pred HHHhh--CCChHHHHHHHHHHHHHHHHHHHHHHHHhcC--C------HHHHHHHHHHHHhh--cccCcc---chHHHHHH
Q psy16214 211 LLLKL--APDHAKAKETYKRAKLLKAKKEEGNEKFVAG--K------NQEAFDIYTEALKI--DARNIN---INSKLLHN 275 (470)
Q Consensus 211 ~~l~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~A~~~~~~al~~--~p~~~~---~~~~~~~~ 275 (470)
..+.. .|.... +... +.. -.++...+ + .+.....++...+. .|-++. ....++.+
T Consensus 182 ~~l~~r~~~~~~~-~~e~--~vl-------~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~ 251 (278)
T PF08631_consen 182 YLLLNRFKSSEDQ-WLEK--LVL-------TRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWN 251 (278)
T ss_pred HHHHHHhCCChhH-HHHH--HHH-------HHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 66652 333221 1111 000 11111111 1 22333333322111 111111 11255667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q psy16214 276 RATVLFKMGKYNEAIADCTLAL 297 (470)
Q Consensus 276 la~~~~~~g~~~~A~~~~~~al 297 (470)
.|...++.++|.+|+.+|+-++
T Consensus 252 ~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 252 KGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHhhcCHHHHHHHHHHHH
Confidence 7999999999999999999776
No 327
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0029 Score=55.10 Aligned_cols=53 Identities=30% Similarity=0.409 Sum_probs=26.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214 125 ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANS 177 (470)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 177 (470)
+...+..+++.+|...+..++...|.+..+...+++|+...|+.+.|...+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 33444445555555555555555555555555555555555555555444443
No 328
>KOG3783|consensus
Probab=97.68 E-value=0.011 Score=55.85 Aligned_cols=252 Identities=13% Similarity=0.043 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHH
Q psy16214 21 SKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF----SKGLIRQIKCNIALGDAPTARSNLK 96 (470)
Q Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 96 (470)
+...+.+.......|+++......+..+...|+.+.|+..++..++ +.. .-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444555555567888888889999999999998888888888776 322 2356778888888999999999998
Q ss_pred HHHhcCCCChHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHhCCCCHHH---HHHHHHHHHHcCCHH
Q psy16214 97 ALQELDPDNPAIAQESK-ALETMAKNFEGASKAFEANDYRTAMFYLD---RAMDQGVASKTY---KLMKAECLAHLNRLQ 169 (470)
Q Consensus 97 ~~l~~~p~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~---~~l~~~p~~~~~---~~~~a~~~~~~~~~~ 169 (470)
.+.+.+.-....+..++ -++...... .....++-+.|-.+.+ ..+...|.+..+ ....+.-+...+.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~----~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-- 401 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEV----NQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-- 401 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHH----HHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc--
Confidence 88876655444444333 221110000 0011123333333222 223333332221 1112222211110
Q ss_pred HHHHHHHHHhhcCCCChH--HHHHHHHHHh--ccCChHHHHHHHHHHHh---h-CCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 170 EAQEIANSILATDKQNPD--AVFVRGLCLY--YDDKMDLAVNHFQLLLK---L-APDHAKAKETYKRAKLLKAKKEEGNE 241 (470)
Q Consensus 170 ~A~~~~~~~l~~~p~~~~--~~~~la~~~~--~~g~~~~A~~~~~~~l~---~-~p~~~~~~~~~~~~~~~~~~~~~~~~ 241 (470)
.++..+. .++.++.++. .....++.. -++..+. . ++++.-....+ +|.+
T Consensus 402 -----------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL-----------~g~~ 458 (546)
T KOG3783|consen 402 -----------LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLL-----------KGVI 458 (546)
T ss_pred -----------ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHH-----------HHHH
Confidence 1111111 1233333321 111222222 1111111 2 33433333332 4888
Q ss_pred HHhcCCHHHHHHHHHHHHh---hcccCccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q psy16214 242 KFVAGKNQEAFDIYTEALK---IDARNININSKLLHNRATVLFKMGK-YNEAIADCTLALEKDPNY 303 (470)
Q Consensus 242 ~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 303 (470)
+...|+...|..+|..++. ....++...+.+++.+|..+..++. ..++..++.+|-....++
T Consensus 459 lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 459 LRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 8889999999888888773 3344444556788888888888888 888888888887765443
No 329
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.0061 Score=49.67 Aligned_cols=95 Identities=25% Similarity=0.252 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHH-HHHHHHHHHH
Q psy16214 156 LMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK-AKETYKRAKL 231 (470)
Q Consensus 156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~~~~~ 231 (470)
..+|..+...+++++|+..++.++....+. +-+-..++.+....|.+++|+..+...-.. .... ....
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--~w~~~~~el------ 164 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--SWAAIVAEL------ 164 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--cHHHHHHHH------
Confidence 345566666666666666666666432221 224455666666666666666665433211 1111 1111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214 232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR 264 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 264 (470)
+|.++...|+-++|...|++++...++
T Consensus 165 ------rGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 165 ------RGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred ------hhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 266666666666666666666666533
No 330
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.62 E-value=0.055 Score=50.09 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=79.7
Q ss_pred HHHHhccCC-hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHH---------h
Q psy16214 193 GLCLYYDDK-MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFD--IYTEAL---------K 260 (470)
Q Consensus 193 a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~al---------~ 260 (470)
|.-+...|. -++|+..++.+++..|.+..+.... ..+-...|.+|+. .+.+.+ .
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--------------~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--------------FLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 334455565 7788999999998888877654332 1111112222221 111111 1
Q ss_pred hcccCccchHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214 261 IDARNININSKLLHNR--ATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI 330 (470)
Q Consensus 261 ~~p~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 330 (470)
+.|-... ...+-..+ |..++..|+|.++.-+..=..++.| ++.++..+|.|+....+|++|..++...
T Consensus 452 l~~i~i~-e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 452 LTPITIS-EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CCccccc-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 2222211 23444444 4457789999999999988889999 7999999999999999999999998754
No 331
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.53 E-value=0.0083 Score=55.08 Aligned_cols=135 Identities=13% Similarity=0.024 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc---cCChHHHHHHHH
Q psy16214 134 YRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY---DDKMDLAVNHFQ 210 (470)
Q Consensus 134 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~ 210 (470)
.+.-+.+|++|++.+|++..++..+-.+....-+.++..+.+++++..+|+++..|...-..... .-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999888766544433 345778888888
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHH
Q psy16214 211 LLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAI 290 (470)
Q Consensus 211 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~ 290 (470)
+++..-..... +. ... .......+. ....++..++......|-.+.|+
T Consensus 127 ~~l~~L~~~~~-----------------~~----~~~-~~~~~~~e~----------~~l~v~~r~~~fl~~aG~~E~Av 174 (321)
T PF08424_consen 127 KCLRALSRRRS-----------------GR----MTS-HPDLPELEE----------FMLYVFLRLCRFLRQAGYTERAV 174 (321)
T ss_pred HHHHHHHHhhc-----------------cc----ccc-ccchhhHHH----------HHHHHHHHHHHHHHHCCchHHHH
Confidence 87763221110 00 000 000000000 02345777777788888888888
Q ss_pred HHHHHHHHhC
Q psy16214 291 ADCTLALEKD 300 (470)
Q Consensus 291 ~~~~~al~~~ 300 (470)
..++-.++++
T Consensus 175 a~~Qa~lE~n 184 (321)
T PF08424_consen 175 ALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 332
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.52 E-value=0.017 Score=53.13 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=118.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH
Q psy16214 139 FYLDRAMDQGVASKTYKLMKAECLAHLNR------------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV 206 (470)
Q Consensus 139 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 206 (470)
..+++.++.+|.+...|..++...-..-. .+.-+.+|++|++.+|++...+..+-.+.....+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999988876554422 456788999999999999999988888888888999999
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCH
Q psy16214 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY 286 (470)
Q Consensus 207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~ 286 (470)
+.+++++..+|++...|..+-.. -...+..-.+......|.+++..-...... . ....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~---------~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~----~---------~~~~ 143 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDF---------RQSNFASFTVSDVRDVYEKCLRALSRRRSG----R---------MTSH 143 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHH---------HHHHhccCcHHHHHHHHHHHHHHHHHhhcc----c---------cccc
Confidence 99999999999999988765111 111123345677777777776543321100 0 0000
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 287 NEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
......+ .....++.++...+...|-.+.|+..++..++++
T Consensus 144 -~~~~~~e------~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 144 -PDLPELE------EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred -cchhhHH------HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 1111111 1125677888999999999999999999999986
No 333
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.52 E-value=0.013 Score=43.35 Aligned_cols=95 Identities=17% Similarity=0.243 Sum_probs=73.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCcc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNIN--------INSKLLHNRATVLFKMGKYNEAIADCTLALEK-------DPNY 303 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~ 303 (470)
|.-.+..|-|++|...+++++....+-|. ..+.++..|+.++..+|+|++++....+++.. +.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 66667789999999999999976543322 24577888999999999999998888888753 4444
Q ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 304 ----LKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 304 ----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
+.+.+.++..+..+|+.++|+..|+++-++
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455677899999999999999999998765
No 334
>KOG0890|consensus
Probab=97.49 E-value=0.25 Score=55.17 Aligned_cols=302 Identities=14% Similarity=0.081 Sum_probs=162.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC--c--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 9 EDGNTQYKLKQYSKALKCYSEAISVCP--N--VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p--~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
.+|.+-++.+.|.+|+.++++- ...+ . ....+..+=.+|...++++.-.-.... ...+|+ ....-..+..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS----LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc----HHHHHHHHHh
Confidence 5778888999999999999984 2211 1 133444455588888888776655543 222332 3344556677
Q ss_pred cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q psy16214 85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT-YKLMKAECLA 163 (470)
Q Consensus 85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~~a~~~~ 163 (470)
.|++..|..+|+++++.+|+........-.. .+..+.+...+...+-.....++... .......+..
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~s------------ml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW 1529 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKS------------MLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAW 1529 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHh------------hhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHh
Confidence 8999999999999999998866443322222 33344455555544444433333222 2222233445
Q ss_pred HcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChH-----HHHHHHHHHH-------hhCCChHHHHHHHHHHHH
Q psy16214 164 HLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMD-----LAVNHFQLLL-------KLAPDHAKAKETYKRAKL 231 (470)
Q Consensus 164 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-----~A~~~~~~~l-------~~~p~~~~~~~~~~~~~~ 231 (470)
..++|+.-..+.. ..+-.+..+.. +|.+.+...+-+ +.++..+..+ .........+..+-++..
T Consensus 1530 ~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~ 1605 (2382)
T KOG0890|consen 1530 RLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHL 1605 (2382)
T ss_pred hhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHH
Confidence 5555555444433 11111111111 233322221111 0111100000 000000001111000000
Q ss_pred HH-----------------------HHHHHHHHHHhcCCHHHHHHHHHHHH---hhcccCccchHHHHHHHHHHHHHcCC
Q psy16214 232 LK-----------------------AKKEEGNEKFVAGKNQEAFDIYTEAL---KIDARNININSKLLHNRATVLFKMGK 285 (470)
Q Consensus 232 ~~-----------------------~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~~~la~~~~~~g~ 285 (470)
.. .+..+...-....+..+-+-.+++++ ..+|+-....+..|...|++....|+
T Consensus 1606 l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1606 LLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 00 00000111111112334444445544 23444333367899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 286 YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 286 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
++.|...+-+|.+.. -+.++..+|..+...|+-..|+..+++.++.+
T Consensus 1686 ~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999999998876 57899999999999999999999999999664
No 335
>KOG1310|consensus
Probab=97.48 E-value=0.00039 Score=64.66 Aligned_cols=105 Identities=32% Similarity=0.302 Sum_probs=95.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMML---GMYTYALDDAKLAVSLDPRFSKGLIRQI 79 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 79 (470)
.++..+..|+-.+..+....|+..|.+++...|.....+.+++.++++. |+.-.|+..+..+++++|...++++.|+
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 4567788888888889999999999999999999999999999999885 5777899999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChH
Q psy16214 80 KCNIALGDAPTARSNLKALQELDPDNPA 107 (470)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 107 (470)
.++..++++.+|+.+...+....|.+..
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 9999999999999999998888886544
No 336
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.47 E-value=0.15 Score=51.41 Aligned_cols=204 Identities=14% Similarity=0.072 Sum_probs=128.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-----hHH
Q psy16214 123 EGASKAFEANDYRTAMFYLDRAMDQGVA---------SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN-----PDA 188 (470)
Q Consensus 123 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~ 188 (470)
..|.......++.+|...+.++...-+. .....-..|.+....|++++|++..+.++..-|.+ ..+
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 3444556678888888888877665333 12455668889999999999999999999887765 346
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHH----hhc
Q psy16214 189 VFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN--QEAFDIYTEAL----KID 262 (470)
Q Consensus 189 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al----~~~ 262 (470)
+..+|.+..-.|++++|..+...+.+.......... .+......+.++..+|+. .+....+...- ...
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l------~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHL------ALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 778899999999999999999988876332211111 112223346777777733 23333333222 112
Q ss_pred ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--HH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK----DPNY--LK-ALSRRCKCFHALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 263 p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 335 (470)
|.+.. ...++..+..++.+ ++.+..-....++. .|.. .. +++.++.+....|+.++|...+.....+..
T Consensus 574 ~~~~f-~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 574 PRHEF-LVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred ccchh-HHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 22111 12223333333333 66666666655554 2322 22 234789999999999999999988877654
Q ss_pred C
Q psy16214 336 S 336 (470)
Q Consensus 336 ~ 336 (470)
+
T Consensus 650 ~ 650 (894)
T COG2909 650 N 650 (894)
T ss_pred C
Confidence 3
No 337
>KOG1464|consensus
Probab=97.44 E-value=0.035 Score=47.64 Aligned_cols=234 Identities=14% Similarity=0.069 Sum_probs=127.1
Q ss_pred cCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 51 LGMYTYALDDAKLAVSLDPRF----SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS 126 (470)
Q Consensus 51 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~ 126 (470)
....++|+..|++++++.|.- ..++-.+..++..++++++-.+.|.+.+..-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk----------------------- 96 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIK----------------------- 96 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-----------------------
Confidence 347899999999999998765 45777888999999999999998888765110
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH
Q psy16214 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV 206 (470)
Q Consensus 127 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 206 (470)
.....+--++++...-..++...+ ...+ +.-|+..+..++.+-. ..-....-..+|.+++..+++.+-.
T Consensus 97 SAVTrNySEKsIN~IlDyiStS~~-m~LL---------Q~FYeTTL~ALkdAKN-eRLWFKTNtKLgkl~fd~~e~~kl~ 165 (440)
T KOG1464|consen 97 SAVTRNYSEKSINSILDYISTSKN-MDLL---------QEFYETTLDALKDAKN-ERLWFKTNTKLGKLYFDRGEYTKLQ 165 (440)
T ss_pred HHHhccccHHHHHHHHHHHhhhhh-hHHH---------HHHHHHHHHHHHhhhc-ceeeeeccchHhhhheeHHHHHHHH
Confidence 011111112222211111111100 0000 0012222222222211 0111223346888888888888777
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcC
Q psy16214 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMG 284 (470)
Q Consensus 207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g 284 (470)
+.+++.-........--...+....+..+.-....|..+.+-..-..+|++++.+... +|.+...+.-.=|..+++.|
T Consensus 166 KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg 245 (440)
T KOG1464|consen 166 KILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREG 245 (440)
T ss_pred HHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccc
Confidence 7776665433221111011111111111222356777777777778889999876543 22222334444567788999
Q ss_pred CHHHHHHHHHHHHHhC-----CCCHH--HHHHHHHHHHHhC
Q psy16214 285 KYNEAIADCTLALEKD-----PNYLK--ALSRRCKCFHALG 318 (470)
Q Consensus 285 ~~~~A~~~~~~al~~~-----p~~~~--~~~~la~~~~~~g 318 (470)
++++|-..|=+|.+.. |.... -|.-+|..+++.|
T Consensus 246 ~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 246 EFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 9999999888888753 32222 2444566665544
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.42 E-value=0.00031 Score=40.08 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16214 272 LLHNRATVLFKMGKYNEAIADCTLALEKDP 301 (470)
Q Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (470)
+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344445555555555555555555554444
No 339
>KOG3616|consensus
Probab=97.40 E-value=0.16 Score=49.98 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q psy16214 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLL 350 (470)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~ 350 (470)
..|-.++.-|...|+|+.|.+.|.++- ....-...|-+.|+|++|.+.-.++. .|..-+...+.+++..-
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLD 835 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHH
Confidence 345667888888888888888887642 22334456777888888877766654 35455666777777665
Q ss_pred hccccc---chhhhccCCCCCCH----HHHHHHHHHHHHHcCCCCCCC
Q psy16214 351 KRSEVK---DYYKILGVTKNASS----DDIKKAYRKRALVHHPDRHTN 391 (470)
Q Consensus 351 ~~~~~~---~~y~~lg~~~~~~~----~ei~~ay~~~~~~~~pd~~~~ 391 (470)
+.++.. ..|-..|.+..+-. .-.....-++..++|||.-.+
T Consensus 836 ehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred hhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence 555432 33444444332210 001112346788999997655
No 340
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.37 E-value=0.039 Score=51.37 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=31.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy16214 143 RAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL 179 (470)
Q Consensus 143 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 179 (470)
..+..+|-..+.+..++.++..+|+...|.+++++++
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4457788888899999999999999988888888875
No 341
>KOG0890|consensus
Probab=97.34 E-value=0.33 Score=54.34 Aligned_cols=291 Identities=10% Similarity=-0.001 Sum_probs=161.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHcC
Q psy16214 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI-KCNIALG 86 (470)
Q Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g 86 (470)
..+-......|+|..|..+|++++..+|+....+...-.+.+..+.+...+...+-.....++...-+..++ .+-..++
T Consensus 1453 ~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1453 YQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhc
Confidence 344445566788888888888888888888877777778888888888888877766665555544444433 3446666
Q ss_pred ChHHHHHHHH--------------HHHhcCCCChHHH-HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----
Q psy16214 87 DAPTARSNLK--------------ALQELDPDNPAIA-QESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ---- 147 (470)
Q Consensus 87 ~~~~A~~~~~--------------~~l~~~p~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---- 147 (470)
+++.-..+.. ..+.....+.-+. ..+....... .+.....-..+.|..+.+++-++...
T Consensus 1533 qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~--i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1533 QWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELV--IENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred chhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHh--hhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 6665554432 0011111111111 1111110000 00000111112333444333332211
Q ss_pred ---------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHh---hcC----CCChHHHHHHHHHHhccCChHHHH
Q psy16214 148 ---------GVAS-----KTYKLMKAECLAHLNRLQEAQEIANSIL---ATD----KQNPDAVFVRGLCLYYDDKMDLAV 206 (470)
Q Consensus 148 ---------~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~l---~~~----p~~~~~~~~la~~~~~~g~~~~A~ 206 (470)
.++. ..-|.++...-....+..+-+-.+++++ ..+ ....+.|...|.+....|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 1111 1122222221111122333333333332 223 234678999999999999999999
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC--------c-----cchHHHH
Q psy16214 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN--------I-----NINSKLL 273 (470)
Q Consensus 207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--------~-----~~~~~~~ 273 (470)
.++-+|.+..+. .+... .|..+...|+-..|+..+++.+..+-.+ | .....+.
T Consensus 1691 nall~A~e~r~~--~i~~E------------~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~ 1756 (2382)
T KOG0890|consen 1691 NALLNAKESRLP--EIVLE------------RAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAK 1756 (2382)
T ss_pred HHHHhhhhcccc--hHHHH------------HHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHH
Confidence 999888887643 22222 3889999999999999999999654222 0 0112233
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 274 HNRATVLFKMGKY--NEAIADCTLALEKDPNYLKALSRRCKCF 314 (470)
Q Consensus 274 ~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~ 314 (470)
...+.-....+++ ..-+..|..+.++.|.....++.+|..|
T Consensus 1757 L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1757 LKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 3444444455553 3467889999999997777777777444
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.34 E-value=0.00034 Score=39.93 Aligned_cols=30 Identities=37% Similarity=0.455 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy16214 40 YYGNRAACYMMLGMYTYALDDAKLAVSLDP 69 (470)
Q Consensus 40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 69 (470)
+|+.+|.+|..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555544
No 343
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.33 E-value=0.28 Score=51.25 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=82.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHc----C---ChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214 10 DGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMML----G---MYTYALDDAKLAVSLDPRFSKGLIRQI 79 (470)
Q Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 79 (470)
..++++..+.|+.|+..|+++-...|.. .++.+..|.+.+.. | .+.+|+..|++. .-.|.-+--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 3567788899999999999999988864 56777888777653 2 477888888764 34677788899999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChHHHH
Q psy16214 80 KCNIALGDAPTARSNLKALQELDPDNPAIAQ 110 (470)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 110 (470)
.+|..+|++++-+++|.-+++..|++|.+-.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 9999999999999999999999999987543
No 344
>PRK10941 hypothetical protein; Provisional
Probab=97.31 E-value=0.0032 Score=55.49 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKR 348 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~ 348 (470)
....+.++-.++...++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+......++.-..
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999766666655444
Q ss_pred Hh
Q psy16214 349 LL 350 (470)
Q Consensus 349 ~~ 350 (470)
.+
T Consensus 260 ~l 261 (269)
T PRK10941 260 SI 261 (269)
T ss_pred HH
Confidence 44
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.30 E-value=0.15 Score=47.63 Aligned_cols=105 Identities=12% Similarity=0.101 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcC----C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214 245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG----K---YNEAIADCTLALEKDPNYLKALSRRCKCFHAL 317 (470)
Q Consensus 245 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g----~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 317 (470)
.|+.++|+..+-..-.+.|+-... ..-|-.+..++.... . --+-+.+.++.+-.+..+..++..-+.--+.+
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRL-MREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHL 789 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHH-HHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHH
Confidence 478889998888777778873221 112222233322211 1 12334555566666788888887777778889
Q ss_pred CCHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHh
Q psy16214 318 GQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLL 350 (470)
Q Consensus 318 g~~~~A~~~~~~a~~~~-p~~~~~~~l~~~~~~~ 350 (470)
.+|.+|+.++++.-+.+ |...+...+..|...+
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (831)
T PRK15180 790 RDYTQALQYWQRLEKVNGPTEPVTRQISTCITAL 823 (831)
T ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Confidence 99999999999999887 4455555555554444
No 346
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.29 E-value=0.003 Score=46.41 Aligned_cols=92 Identities=14% Similarity=0.027 Sum_probs=72.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhcCCCCHHHH
Q psy16214 10 DGNTQYKLKQYSKALKCYSEAISVCPNVA---AYYGNRAACYMMLGM-----------YTYALDDAKLAVSLDPRFSKGL 75 (470)
Q Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 75 (470)
+|..++..||+.+|+++.+..+..++++. ..+...|.++..+.. .-.|++.+.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999888765 556667887765542 3467788888888888888888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214 76 IRQIKCNIALGDAPTARSNLKALQEL 101 (470)
Q Consensus 76 ~~la~~~~~~g~~~~A~~~~~~~l~~ 101 (470)
+.+|.-+-....|+++..-.++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88887777777777777777777764
No 347
>KOG1550|consensus
Probab=97.23 E-value=0.18 Score=50.18 Aligned_cols=265 Identities=12% Similarity=0.002 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcC
Q psy16214 4 AEKHKEDGNTQYKL-----KQYSKALKCYSEAISV-----CPNVAAYYGNRAACYMMLG-----MYTYALDDAKLAVSLD 68 (470)
Q Consensus 4 a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~ 68 (470)
+.....+|.+++.- .|.+.|+.+|..+... .-.++.+.+.+|.+|..-. ++..|+..+.++.+..
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 34455666666554 6899999999999771 1125668889999999853 6788999999998765
Q ss_pred CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214 69 PRFSKGLIRQIKCNIALG---DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM 145 (470)
Q Consensus 69 p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 145 (470)
++.+.+.+|.++..-. ++..|..+|..+... .+..+...++.++.. + .-...+...|..++.++.
T Consensus 324 --~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~------G--~gv~r~~~~A~~~~k~aA 391 (552)
T KOG1550|consen 324 --NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL------G--LGVERNLELAFAYYKKAA 391 (552)
T ss_pred --CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh------C--CCcCCCHHHHHHHHHHHH
Confidence 5678889999998766 578999999998764 355666666665322 1 112357889999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcCCCChH----HHHHHHHHHhcc----CChHHHHHHHHHHHhhC
Q psy16214 146 DQGVASKTYKLMKAECLAHL-NRLQEAQEIANSILATDKQNPD----AVFVRGLCLYYD----DKMDLAVNHFQLLLKLA 216 (470)
Q Consensus 146 ~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~----g~~~~A~~~~~~~l~~~ 216 (470)
+.. .+.+...++.++..- +.++.+...+.......-..+. .+.......... .+...+...+.++...
T Consensus 392 ~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~- 468 (552)
T KOG1550|consen 392 EKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ- 468 (552)
T ss_pred Hcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-
Confidence 887 333344444444332 7777776666655444322221 111111111111 2344555555555433
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH---cCCHHHH
Q psy16214 217 PDHAKAKETYKRAKLLKAKKEEGNEKFVA----GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK---MGKYNEA 289 (470)
Q Consensus 217 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~---~g~~~~A 289 (470)
.+..+...+ |.+|+.- .+++.|...|..+.... +...+++|.++.. ...+..|
T Consensus 469 -g~~~a~~~l------------gd~y~~g~g~~~d~~~a~~~y~~a~~~~-------~~~~~nlg~~~e~g~g~~~~~~a 528 (552)
T KOG1550|consen 469 -GNADAILKL------------GDYYYYGLGTGRDPEKAAAQYARASEQG-------AQALFNLGYMHEHGEGIKVLHLA 528 (552)
T ss_pred -cCHHHHhhh------------cceeeecCCCCCChHHHHHHHHHHHHhh-------hHHHhhhhhHHhcCcCcchhHHH
Confidence 233333333 6666554 46899999999987766 3568888888753 1127889
Q ss_pred HHHHHHHHHhCCCC
Q psy16214 290 IADCTLALEKDPNY 303 (470)
Q Consensus 290 ~~~~~~al~~~p~~ 303 (470)
..++.++.+.+...
T Consensus 529 ~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 529 KRYYDQASEEDSRA 542 (552)
T ss_pred HHHHHHHHhcCchh
Confidence 99999988876553
No 348
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.21 E-value=0.0093 Score=50.86 Aligned_cols=95 Identities=18% Similarity=0.101 Sum_probs=70.0
Q ss_pred HhcCCHHHHHHHHHHHHhh---cccCccchHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhC--CC----CHHH
Q psy16214 243 FVAGKNQEAFDIYTEALKI---DARNININSKLLHNRATVLFKMGKYN-------EAIADCTLALEKD--PN----YLKA 306 (470)
Q Consensus 243 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~--p~----~~~~ 306 (470)
.....+++|++.|.-|+-. ....+...+.++..+|++|..+++.+ .|++.|.+++... |. ...+
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 3345778888888887732 22223235788999999999999954 5556666665543 22 2678
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCh
Q psy16214 307 LSRRCKCFHALGQYKECVIDAEKIYKMDNSR 337 (470)
Q Consensus 307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 337 (470)
.+.+|.+..++|++++|.++|.+++.....+
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 8999999999999999999999999875543
No 349
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.18 E-value=0.024 Score=52.73 Aligned_cols=78 Identities=24% Similarity=0.086 Sum_probs=57.0
Q ss_pred hhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------------CCC------------C---HHHHHHHHHH
Q psy16214 31 ISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--------------DPR------------F---SKGLIRQIKC 81 (470)
Q Consensus 31 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------~p~------------~---~~~~~~la~~ 81 (470)
+..+|-+.+++..++.++..+|+...|.+.+++|+-. ++. | ..+.++....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4567888889999999999999988888888887532 111 1 2355666777
Q ss_pred HHHcCChHHHHHHHHHHHhcCCC-ChHH
Q psy16214 82 NIALGDAPTARSNLKALQELDPD-NPAI 108 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~-~~~~ 108 (470)
+.+.|-+..|.+..+-++.++|. ++-.
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence 77788888888888888888887 5543
No 350
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.15 E-value=0.21 Score=46.34 Aligned_cols=71 Identities=6% Similarity=0.002 Sum_probs=44.4
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy16214 26 CYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQ 99 (470)
Q Consensus 26 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 99 (470)
.+++++..-|-.+..|+.....+...++-+.|+...++++...|. ....++.+|....+.+....+|+++.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~ 360 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT 360 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence 345555555556666766666666777777777766666655554 45566666666666665555666554
No 351
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.14 E-value=0.19 Score=45.63 Aligned_cols=174 Identities=17% Similarity=0.075 Sum_probs=125.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Q psy16214 13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMML----GMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA---- 84 (470)
Q Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 84 (470)
.....+++..|+..+..+-.. ..+.....++.+|..- .+..+|+..|..+. ...++.+.+.+|.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCc
Confidence 344667889999999988763 2346777888888753 46888999999544 56678899999999987
Q ss_pred cCChHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 85 LGDAPTARSNLKALQELDPDN-PAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA 163 (470)
Q Consensus 85 ~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 163 (470)
..+..+|..+|.++....-.. ......++..+..-. .. .-...+...|+..+.++.... ++.....+|.+|.
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~----~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~ 198 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA----LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYE 198 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh----hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 459999999999998865433 233555555543321 00 111113357888888887776 6777888888886
Q ss_pred H----cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC
Q psy16214 164 H----LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD 200 (470)
Q Consensus 164 ~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 200 (470)
. ..++.+|...|.++.+... ....+.++ +++..|
T Consensus 199 ~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 199 KGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred cCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 5 3589999999999998776 88888888 666655
No 352
>KOG0568|consensus
Probab=97.12 E-value=0.00066 Score=55.64 Aligned_cols=58 Identities=26% Similarity=0.563 Sum_probs=48.6
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHh-hcCCh
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG-ILSDP 417 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~-~l~d~ 417 (470)
...++|++|||...++.++++.+|-+++.++|||...+ +.....|..|.+||. ||+..
T Consensus 45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~------~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE------EADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc------cccHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999998765 334567888888886 66553
No 353
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.12 E-value=0.00073 Score=38.18 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPN 36 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 36 (470)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 354
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.07 E-value=0.014 Score=46.35 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+..+..........++.+++..++...--+.|+.+..-..-|..++..|++.+|+..++.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34577788888888899999999888888899999988889999999999999999999988888888888888889988
Q ss_pred HcCChH
Q psy16214 84 ALGDAP 89 (470)
Q Consensus 84 ~~g~~~ 89 (470)
.+|+.+
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 888764
No 355
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.07 E-value=0.0081 Score=44.18 Aligned_cols=95 Identities=17% Similarity=0.261 Sum_probs=77.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK-----------YNEAIADCTLALEKDPNYLKAL 307 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 307 (470)
+..++..|++-+|+++.+..+...+++... +.++..-|.++..+.. .-.+++.+.++..+.|..+..+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~-~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESS-WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCch-HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 778899999999999999999988876532 2556666777765543 4568999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 308 SRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 308 ~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
+.+|.-+-...-|++++.-.++++.+.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999988888888888888888888764
No 356
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.00 E-value=0.011 Score=42.53 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChH
Q psy16214 23 ALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF--SKGLIRQIKCNIALGDAP 89 (470)
Q Consensus 23 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 89 (470)
.+..+++.+..+|++..+.+.+|..++..|++++|++.+-.++..++++ ..+...+-.++..+|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4566778888888888888888888888888888888888888887765 445555555555555433
No 357
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.99 E-value=0.0014 Score=36.95 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 306 ALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 306 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+++.+|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666777777777777777777777766664
No 358
>PRK10941 hypothetical protein; Provisional
Probab=96.97 E-value=0.011 Score=52.09 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q psy16214 154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK 230 (470)
Q Consensus 154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 230 (470)
.+.++-.++...++++.|+.+.+.++...|+++.-+..+|.+|.++|.+..|...++..++..|+++.+.....++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 45567788999999999999999999999999999999999999999999999999999999999998876654443
No 359
>KOG1914|consensus
Probab=96.97 E-value=0.37 Score=45.92 Aligned_cols=226 Identities=12% Similarity=0.024 Sum_probs=150.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC---CH
Q psy16214 95 LKALQELDPDNPAIAQESKALETMAKN--FEGASKAFEANDYRTAMFYLDRAMDQGV-ASKTYKLMKAECLAHLN---RL 168 (470)
Q Consensus 95 ~~~~l~~~p~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~---~~ 168 (470)
+++++..-+-.+++|+.........++ .+.+..--.....+++..++++++..-. .+...++.++..-...- .+
T Consensus 268 yeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~ 347 (656)
T KOG1914|consen 268 YEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKE 347 (656)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchh
Confidence 444444455566777766655444333 1122222223334567777777776533 33445555554443333 37
Q ss_pred HHHHHHHHHHhhcCCCChH-HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16214 169 QEAQEIANSILATDKQNPD-AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGK 247 (470)
Q Consensus 169 ~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (470)
+.....+++++.....++. +|..+-..-.+..-...|...|.++-+..-....++..- .-.-|.-.++
T Consensus 348 ~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~-----------A~mEy~cskD 416 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA-----------ALMEYYCSKD 416 (656)
T ss_pred hhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH-----------HHHHHHhcCC
Confidence 7788888888877655544 455555666666778889999999877543332332221 0234667899
Q ss_pred HHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHHhCCHHHHH
Q psy16214 248 NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK--DPN-YLKALSRRCKCFHALGQYKECV 324 (470)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~ 324 (470)
..-|...|+-.++..++++.+ -......+..+++-..|...|++++.. .|+ ...+|-..-..-..-|+...++
T Consensus 417 ~~~AfrIFeLGLkkf~d~p~y----v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 417 KETAFRIFELGLKKFGDSPEY----VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred hhHHHHHHHHHHHhcCCChHH----HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999999996643 555677788899999999999999987 433 3577877878888899999998
Q ss_pred HHHHHHHhcCC
Q psy16214 325 IDAEKIYKMDN 335 (470)
Q Consensus 325 ~~~~~a~~~~p 335 (470)
+.=++-....|
T Consensus 493 ~lekR~~~af~ 503 (656)
T KOG1914|consen 493 KLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhcc
Confidence 88888777776
No 360
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.93 E-value=0.0078 Score=38.03 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214 74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES 112 (470)
Q Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 112 (470)
.++.+|..+.++|+|++|..+.+.++++.|+|..+....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 456667777777777777777777777777776655433
No 361
>KOG0723|consensus
Probab=96.91 E-value=0.0026 Score=45.43 Aligned_cols=56 Identities=34% Similarity=0.471 Sum_probs=45.8
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChh
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPT 418 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~ 418 (470)
.+++.-.+|||..+.+.+.|++++|+.....|||+.-++ . .=.+|+||+++|....
T Consensus 54 sr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP------Y---lAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 54 SRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP------Y---LASKINEAKDLLEGTS 109 (112)
T ss_pred chHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH------H---HHHHHHHHHHHHhccc
Confidence 456677899999999999999999999999999998772 1 1235899999986543
No 362
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.89 E-value=0.0087 Score=37.81 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy16214 273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKAL 307 (470)
Q Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (470)
++.+|..+.++|+|++|..+++.++++.|++..+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 45555555555555555555555555555555443
No 363
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.87 E-value=0.0021 Score=37.15 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 306 ALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 306 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
++..+|.+|..+|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46788888888888888888888866554
No 364
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.86 E-value=0.35 Score=43.96 Aligned_cols=182 Identities=15% Similarity=0.064 Sum_probs=130.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc----cCC
Q psy16214 130 EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL----NRLQEAQEIANSILATDKQNPDAVFVRGLCLYY----DDK 201 (470)
Q Consensus 130 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~ 201 (470)
..+++..++..+..+-.. ........++.++..- .+..+|+..|..+. ...++.+.+.+|.++.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccC
Confidence 446777777777777652 2235666777777654 46888999999444 46678899999999977 458
Q ss_pred hHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHHHHHHHHHhc-----C--CHHHHHHHHHHHHhhcccCccchHHHH
Q psy16214 202 MDLAVNHFQLLLKLAPDHA-KAKETYKRAKLLKAKKEEGNEKFVA-----G--KNQEAFDIYTEALKIDARNININSKLL 273 (470)
Q Consensus 202 ~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~~~ 273 (470)
..+|..+|+++....-... .+...+ +..+..- - +...|+..|.++-... ...+.
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l------------~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~------~~~a~ 190 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRL------------GLAYLSGLQALAVAYDDKKALYLYRKAAELG------NPDAQ 190 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHH------------HHHHHcChhhhcccHHHHhHHHHHHHHHHhc------CHHHH
Confidence 9999999999998754332 223333 4444432 1 2347888888887665 34568
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---------------CHHHHHHHHHHHHhcC
Q psy16214 274 HNRATVLFK----MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG---------------QYKECVIDAEKIYKMD 334 (470)
Q Consensus 274 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~a~~~~ 334 (470)
..+|.+|.. ..++.+|..+|.++.+... ..+.+.++ ++...| +...|..++.++....
T Consensus 191 ~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 191 LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 888887754 3489999999999999877 88899999 776665 7778888888887776
Q ss_pred CC
Q psy16214 335 NS 336 (470)
Q Consensus 335 p~ 336 (470)
+.
T Consensus 268 ~~ 269 (292)
T COG0790 268 FD 269 (292)
T ss_pred Ch
Confidence 64
No 365
>KOG1310|consensus
Probab=96.85 E-value=0.0054 Score=57.39 Aligned_cols=103 Identities=26% Similarity=0.317 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHH
Q psy16214 230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM---GKYNEAIADCTLALEKDPNYLKA 306 (470)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~ 306 (470)
..+...+..|+-.+..+.+..|+..|.+++...|. ...++.+++.++++. |+.-.|+..+..+++++|....+
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~----~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD----AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc----hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 34445555677777778889999999999999998 456688999888765 46778999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 307 LSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++.+++++..++++.+|+.+...+....|+
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence 999999999999999999999988888885
No 366
>KOG3824|consensus
Probab=96.82 E-value=0.0042 Score=54.03 Aligned_cols=76 Identities=14% Similarity=0.010 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 40 YYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
.-.+.|.-....|+.++|...|+.|+.+.|.++.++..+|......++.-+|-.+|-+++.++|.+.+++....+.
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3344455556778888888888888888888888888888888877888888888888888888887776655544
No 367
>KOG3824|consensus
Probab=96.81 E-value=0.0077 Score=52.50 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214 117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC 195 (470)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 195 (470)
........|......|+.++|...++.++.+.|++++++...|......++.-+|-.+|-+++.++|.+.+++.+++..
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3444556667778889999999999999999999999999999998888999999999999999999998888777654
No 368
>KOG2041|consensus
Probab=96.81 E-value=0.59 Score=45.95 Aligned_cols=228 Identities=10% Similarity=0.047 Sum_probs=106.4
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16214 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDR 143 (470)
Q Consensus 64 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 143 (470)
.++-+| ++..|..+|......-.++-|...|-++-.. |. ......++.+.... .+.|...---|++++|...|-.
T Consensus 685 fiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~--~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 685 FIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKE--QQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred HHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHH--HHhHhHhhhhcchhHhhhhhhc
Confidence 344455 6788888888887777777777777665331 11 11222333332221 1112211122444444443322
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC--CChHHHHHHHHHHhccCChHHHHHHHHHH---------
Q psy16214 144 AMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK--QNPDAVFVRGLCLYYDDKMDLAVNHFQLL--------- 212 (470)
Q Consensus 144 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~--------- 212 (470)
+-+. -....++...|+|-...++++..-.-.. ..-+++..+|..+..+..+++|.++|..+
T Consensus 760 ~drr--------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ec 831 (1189)
T KOG2041|consen 760 ADRR--------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIEC 831 (1189)
T ss_pred cchh--------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHH
Confidence 2111 0111223333444333333332111100 01224444444444444444444444332
Q ss_pred -------------HhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHH
Q psy16214 213 -------------LKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV 279 (470)
Q Consensus 213 -------------l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~ 279 (470)
...-|++......+ |..+...|.-++|++.|-+. ..|. +. -..
T Consensus 832 ly~le~f~~LE~la~~Lpe~s~llp~~------------a~mf~svGMC~qAV~a~Lr~--s~pk-----aA-----v~t 887 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPEDSELLPVM------------ADMFTSVGMCDQAVEAYLRR--SLPK-----AA-----VHT 887 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCcccchHHHH------------HHHHHhhchHHHHHHHHHhc--cCcH-----HH-----HHH
Confidence 33334544444444 67777777777777766542 1122 00 123
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214 280 LFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI 330 (470)
Q Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 330 (470)
+..++++.+|.+..++- + -|.-.......+.-++..++.-+|++..+++
T Consensus 888 Cv~LnQW~~avelaq~~-~-l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQRF-Q-LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 44556666666655431 1 1333334444555566777788888877776
No 369
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.78 E-value=0.02 Score=42.39 Aligned_cols=92 Identities=21% Similarity=0.213 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcC---Cc---------hhHHHHHHHHHHHHcCChHHHHHHHHHHHh-------cCC
Q psy16214 9 EDGNTQYKLKQYSKALKCYSEAISVC---PN---------VAAYYGNRAACYMMLGMYTYALDDAKLAVS-------LDP 69 (470)
Q Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~---p~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------~~p 69 (470)
..|...+..|-|++|...++++.+.. |. ++.++..++.++..+|+|++++....+++. ++.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 44666778899999999999998763 21 366788899999999999999888887775 344
Q ss_pred CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214 70 RF----SKGLIRQIKCNIALGDAPTARSNLKALQE 100 (470)
Q Consensus 70 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 100 (470)
+. +.+.+..|.++..+|+.++|+..|+.+-+
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 43 44567789999999999999999998765
No 370
>KOG2041|consensus
Probab=96.74 E-value=0.67 Score=45.61 Aligned_cols=167 Identities=10% Similarity=-0.008 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH----------HHHHHHHHHcCChH
Q psy16214 20 YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGL----------IRQIKCNIALGDAP 89 (470)
Q Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~ 89 (470)
.++|+++. +-+| ++..|..+|......-.++-|...|-++-.. |. .+.- ...|.+-.--|+++
T Consensus 679 ledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 44555443 3455 5888988988888777777777777654321 11 1111 23344445567888
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy16214 90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ 169 (470)
Q Consensus 90 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~ 169 (470)
+|.+.|-.+-. .+. ...++...+++-....+++.|--+.- +.....++..+|..+..+..|+
T Consensus 752 eaek~yld~dr---rDL-----Aielr~klgDwfrV~qL~r~g~~d~d----------D~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 752 EAEKLYLDADR---RDL-----AIELRKKLGDWFRVYQLIRNGGSDDD----------DEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred Hhhhhhhccch---hhh-----hHHHHHhhhhHHHHHHHHHccCCCcc----------hHHHHHHHHHHHHHHHHHHHHH
Confidence 88877754422 111 11222222222222222222100000 0000123333344333333344
Q ss_pred HHHHHHH----------------------HHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q psy16214 170 EAQEIAN----------------------SILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL 211 (470)
Q Consensus 170 ~A~~~~~----------------------~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 211 (470)
+|.++|. .+...-|++...+-.+|..+...|.-++|++.+-+
T Consensus 814 ~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 814 EAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 4333332 22334577777888888888888888888887754
No 371
>KOG1463|consensus
Probab=96.68 E-value=0.44 Score=42.64 Aligned_cols=169 Identities=16% Similarity=0.145 Sum_probs=115.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc----C--CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC-----CChHHHHH
Q psy16214 156 LMKAECLAHLNRLQEAQEIANSILAT----D--KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA-----PDHAKAKE 224 (470)
Q Consensus 156 ~~~a~~~~~~~~~~~A~~~~~~~l~~----~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~ 224 (470)
..++.+|...++|.+|+.....+++. + +.-.+++..-..+|+...+..+|...+..+-... |....+.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~- 210 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQAT- 210 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHH-
Confidence 45788899999999999988877653 2 2235677777888999999999988887665422 2111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--C--ccchHHHHHHHHHHHHHcCCHHH--HHHHHHHHHH
Q psy16214 225 TYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--N--ININSKLLHNRATVLFKMGKYNE--AIADCTLALE 298 (470)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~--~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~ 298 (470)
+-. .-|..+....+|.-|..+|-+|++-... + ....+.-|..++.+ .++..++ ++-.-..+++
T Consensus 211 ----lDL-----qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKI--Mln~~ddv~~lls~K~~l~ 279 (411)
T KOG1463|consen 211 ----LDL-----QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKI--MLNLPDDVAALLSAKLALK 279 (411)
T ss_pred ----HHH-----hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHH--HhcCHHHHHHHHhhHHHHh
Confidence 111 1277777778999999999999864321 1 11112233344444 4555544 5555667777
Q ss_pred hCCCCHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhcCCC
Q psy16214 299 KDPNYLKALSRRCKCFH--ALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 299 ~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.......+....+.++. .+.+|+.|+..|+.-+..+|-
T Consensus 280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 77888999999999886 467899999999998888874
No 372
>KOG2396|consensus
Probab=96.68 E-value=0.064 Score=50.29 Aligned_cols=95 Identities=20% Similarity=0.190 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC-hHHHHHHHHHHH
Q psy16214 135 RTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK-MDLAVNHFQLLL 213 (470)
Q Consensus 135 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l 213 (470)
..-+..|..+....+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3456678889999999999999988888888889999999999999999999999999988777665 999999999999
Q ss_pred hhCCChHHHHHHHHHH
Q psy16214 214 KLAPDHAKAKETYKRA 229 (470)
Q Consensus 214 ~~~p~~~~~~~~~~~~ 229 (470)
+.+|+++..|..+-+.
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 9999999988765433
No 373
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.65 E-value=0.0043 Score=35.81 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 273 LHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
+.++|.+|..+|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777777777777777777775433
No 374
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.64 E-value=0.046 Score=43.52 Aligned_cols=94 Identities=17% Similarity=0.048 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCCh
Q psy16214 123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKM 202 (470)
Q Consensus 123 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 202 (470)
+.....+..++.+++...+..+--+.|..+.+...-|.+++..|+|.+|+.+++.+....|..+.+--.++.|+...++.
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33444566788999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHhhCC
Q psy16214 203 DLAVNHFQLLLKLAP 217 (470)
Q Consensus 203 ~~A~~~~~~~l~~~p 217 (470)
+= ..+-..+++..+
T Consensus 95 ~W-r~~A~evle~~~ 108 (160)
T PF09613_consen 95 SW-RRYADEVLESGA 108 (160)
T ss_pred HH-HHHHHHHHhcCC
Confidence 52 222334454444
No 375
>KOG2396|consensus
Probab=96.60 E-value=0.67 Score=43.82 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=66.1
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhc
Q psy16214 23 ALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD-APTARSNLKALQEL 101 (470)
Q Consensus 23 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~ 101 (470)
-+..|+.+....+.++..|........+.+.+.+--..|.+++..+|+++..|...|.-.+..+. .+.|...+.+++..
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 35567777777777777777777666666667777777777777788777777777766665554 77777777788887
Q ss_pred CCCChHHHHHHHH
Q psy16214 102 DPDNPAIAQESKA 114 (470)
Q Consensus 102 ~p~~~~~~~~l~~ 114 (470)
+|+++..|...-+
T Consensus 170 npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 170 NPDSPKLWKEYFR 182 (568)
T ss_pred CCCChHHHHHHHH
Confidence 8777776654443
No 376
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.59 E-value=1 Score=45.69 Aligned_cols=80 Identities=9% Similarity=-0.009 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16214 248 NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDA 327 (470)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 327 (470)
..+|...+..+.....+ .........+....++++.+..++...-....+.....+.+|+++..+|+.++|...|
T Consensus 295 ~~~a~~w~~~~~~~~~~-----~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~ 369 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQS-----TSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEIL 369 (644)
T ss_pred CHHHHHHHHhcccccCC-----cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHH
Confidence 45566666654432222 1223333444457778877766666643333345677888888888888888888888
Q ss_pred HHHHh
Q psy16214 328 EKIYK 332 (470)
Q Consensus 328 ~~a~~ 332 (470)
+++..
T Consensus 370 ~~~a~ 374 (644)
T PRK11619 370 RQLMQ 374 (644)
T ss_pred HHHhc
Confidence 87744
No 377
>KOG1538|consensus
Probab=96.58 E-value=0.18 Score=48.84 Aligned_cols=183 Identities=16% Similarity=0.104 Sum_probs=95.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHH
Q psy16214 76 IRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ--GVASKT 153 (470)
Q Consensus 76 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~ 153 (470)
..+|.++.-.|.+.+|.+.|.+.=. ...+ ..++.....++.|..++..|..++-....++-.+- +.+.+.
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~----enRA----lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk 707 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGH----ENRA----LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK 707 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCc----hhhH----HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH
Confidence 3567777778888888888876321 1112 23444445567777777777666655544433221 222222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH----------HhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214 154 YKLMKAECLAHLNRLQEAQEIANS----------ILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK 223 (470)
Q Consensus 154 ~~~~~a~~~~~~~~~~~A~~~~~~----------~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 223 (470)
..|+.+...|+.++|+.+.-. .-+++...-+.+...+..+.....+.-|.+.|++.=
T Consensus 708 ---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g---------- 774 (1081)
T KOG1538|consen 708 ---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG---------- 774 (1081)
T ss_pred ---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc----------
Confidence 246777888888888765431 111222222333333333333344444444443321
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214 224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296 (470)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (470)
........+...++|.+|..+-++--+..| .+|+-.|.-+.+..++++|.+.|-+|
T Consensus 775 ----------D~ksiVqlHve~~~W~eAFalAe~hPe~~~-------dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 775 ----------DLKSLVQLHVETQRWDEAFALAEKHPEFKD-------DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ----------cHHHHhhheeecccchHhHhhhhhCccccc-------cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 111125666777888888776665433333 34555555555555555555555443
No 378
>KOG1789|consensus
Probab=96.58 E-value=0.0034 Score=63.38 Aligned_cols=56 Identities=32% Similarity=0.491 Sum_probs=45.5
Q ss_pred ccchhhhccCCCCC----CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChh
Q psy16214 355 VKDYYKILGVTKNA----SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPT 418 (470)
Q Consensus 355 ~~~~y~~lg~~~~~----~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~ 418 (470)
..+.|++|.++... ..+.|+++|++++.+|||||++. -.++|..+++|||.|+...
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE--------GRemFe~VnKAYE~L~~~t 1339 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE--------GREMFERVNKAYELLSSET 1339 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch--------HHHHHHHHHHHHHHHHHHH
Confidence 35788998887633 33689999999999999999975 4678999999999997443
No 379
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.53 E-value=0.051 Score=39.04 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q psy16214 137 AMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN 185 (470)
Q Consensus 137 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 185 (470)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3556778888999999999999999999999999999999999988765
No 380
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.53 E-value=0.7 Score=43.11 Aligned_cols=187 Identities=11% Similarity=-0.044 Sum_probs=111.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhh----
Q psy16214 140 YLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL---- 215 (470)
Q Consensus 140 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---- 215 (470)
.+++++...|-.+++|+.....+...++-+.|+......+...|. ....++.++...++.+.-..+|+++...
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ 366 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK 366 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence 344555555666666666666666777777777777776665554 5566677776666665555555555431
Q ss_pred ----CC-------ChH---HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHH-HH
Q psy16214 216 ----AP-------DHA---KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRAT-VL 280 (470)
Q Consensus 216 ----~p-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~-~~ 280 (470)
+. +++ .-.......+..-.+...-+.-.+..-.+.|..+|.++-+..-..+ .++..-|. -+
T Consensus 367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h----~vyi~~A~~E~ 442 (660)
T COG5107 367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGH----HVYIYCAFIEY 442 (660)
T ss_pred HhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCc----ceeeeHHHHHH
Confidence 00 001 0000000001111111112233334445666677776654432211 22332232 35
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
...|++..|...|+-.+...|+.+......-..+...++-+.|...|+++++.
T Consensus 443 ~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 443 YATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 57899999999999999999999888788888889999999999999988754
No 381
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.51 E-value=0.32 Score=39.05 Aligned_cols=144 Identities=13% Similarity=0.040 Sum_probs=86.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy16214 44 RAACYMMLGMYTYALDDAKLAVSLDPRF--SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN 121 (470)
Q Consensus 44 ~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 121 (470)
-+.-+...+..++|+..|...-+..-.. .-+.++.+.+..+.|+...|+..|..+-...| .|.+...+++
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~AR------- 135 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLAR------- 135 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHH-------
Confidence 3444455677778887777665544333 34567778888888888888888888765433 3333333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy16214 122 FEGASKAFEANDYRTAMFYLDRAM-DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCL 196 (470)
Q Consensus 122 ~~~a~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 196 (470)
+..|..++..|.|++.....+.+- ..+|-...+...+|..-++.|++..|...|..+.. +...|....+++.+.
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 344455666676666655554432 22444455666677777777777777777776655 444455555555443
No 382
>KOG0529|consensus
Probab=96.44 E-value=0.74 Score=42.46 Aligned_cols=316 Identities=13% Similarity=0.080 Sum_probs=183.8
Q ss_pred HHHhcCCHH-HHHHHHHHHhhcCCchhHHHHHHHHHHHHc------------CChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214 13 TQYKLKQYS-KALKCYSEAISVCPNVAAYYGNRAACYMML------------GMYTYALDDAKLAVSLDPRFSKGLIRQI 79 (470)
Q Consensus 13 ~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~a~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~la 79 (470)
.....|.|+ ++++.=.+.+..+|+...+|..+=.++... .-.++-+.....+++.+|+...+|+.+.
T Consensus 37 ~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~ 116 (421)
T KOG0529|consen 37 KKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK 116 (421)
T ss_pred HHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 334455554 677777888889999888777665554332 2356677888899999999999999999
Q ss_pred HHHHHcCC--hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16214 80 KCNIALGD--APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLM 157 (470)
Q Consensus 80 ~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 157 (470)
.++.+.+. +..=+...+++++.+|.|-..|.....+...... ......+-+.+.++++..++.+-.+|..
T Consensus 117 w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~--------~~~~~~~El~ftt~~I~~nfSNYsaWhy 188 (421)
T KOG0529|consen 117 WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER--------SRNLEKEELEFTTKLINDNFSNYSAWHY 188 (421)
T ss_pred HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc--------ccccchhHHHHHHHHHhccchhhhHHHH
Confidence 99987764 5788899999999999999988766655333211 1123556678889999999999999888
Q ss_pred HHHHHHH------cCC------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH
Q psy16214 158 KAECLAH------LNR------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET 225 (470)
Q Consensus 158 ~a~~~~~------~~~------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 225 (470)
+..++.. .|+ ...-++....++-.+|++..+|+..-..+-..-+.+--+..+...+..+-..+.....
T Consensus 189 Rs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~~~~~~~~~~S~s~~ls~~~~~p~~~~l 268 (421)
T KOG0529|consen 189 RSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGRGMRRECYIVSHSALLSESFSEPLIKYL 268 (421)
T ss_pred HHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcccccccccccccccccccccCCccHHHH
Confidence 8777652 232 2344566667778899999888764333322111110000111222222222221111
Q ss_pred HHHHHHHHH----HH-----HHHHHHHhcCCHHHHHHHHHHHHhhcccCccch-----HHHHH-----HHHHHH-HHcCC
Q psy16214 226 YKRAKLLKA----KK-----EEGNEKFVAGKNQEAFDIYTEALKIDARNININ-----SKLLH-----NRATVL-FKMGK 285 (470)
Q Consensus 226 ~~~~~~~~~----~~-----~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----~~~~~-----~la~~~-~~~g~ 285 (470)
...+..+.. .. .+|.......++..+.+..+--+...+.+.... ...++ .++.+. ....+
T Consensus 269 ~~e~~~v~~~i~~E~~~~~d~~gw~~~~~~n~~s~~~~~~v~~~~e~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~e~~~ 348 (421)
T KOG0529|consen 269 RSEIGLVQSTIGSEFETPIDKRGWLCESLVNLESPYETKRVHLTVEDQQFGIVSWVASNEQWLHALLDDLDSLDCNEETR 348 (421)
T ss_pred HHHhhhhhhhhhhhccccccccCchhccccchhhhhhcccccccccccccccccchhhhhhhHHHHhhhccccchhhhcc
Confidence 111111111 00 012333334455554441111111111111000 01111 011111 11122
Q ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCC
Q psy16214 286 ---YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ---YKECVIDAEKIYKMDNS 336 (470)
Q Consensus 286 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~ 336 (470)
..+.++.+.++...-|++-...+..+.+....+. .++-+..+.....++|.
T Consensus 349 ~a~lqe~ie~c~~l~~~~P~~k~~~l~~~~l~~a~e~~~~~~~~l~~~~~le~~d~~ 405 (421)
T KOG0529|consen 349 RAWLQEQIESCVELQELLPDSKWGLLTSALLLRALEPMDSEEEILQLYNDLEALDPG 405 (421)
T ss_pred HHHHHHHHHHHHHHHhhCCccchhHHHHHHHHhccccccchHHHHHHHHHHhccchh
Confidence 4578888999999999998888888888776654 35566666666666664
No 383
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.40 E-value=0.065 Score=41.84 Aligned_cols=84 Identities=17% Similarity=-0.034 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL 85 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 85 (470)
.+.+.........+.+++...+...--+.|+.+..-..-|..++..|++.+|+..++...+-.+..+-+.-.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 45555666666778888888887777778888888888888888888888888888887777777777777778888777
Q ss_pred CChH
Q psy16214 86 GDAP 89 (470)
Q Consensus 86 g~~~ 89 (470)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 7753
No 384
>KOG2581|consensus
Probab=96.39 E-value=0.42 Score=43.84 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=29.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (470)
..|...+.|+.|-....++.--...+....+..++.+|.+..-+.+|..|.+++-+|+...|+
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 344444555555554444331111111113444555555555555555555555555555554
No 385
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.34 E-value=0.0076 Score=33.31 Aligned_cols=27 Identities=37% Similarity=0.452 Sum_probs=10.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy16214 42 GNRAACYMMLGMYTYALDDAKLAVSLD 68 (470)
Q Consensus 42 ~~~a~~~~~~g~~~~A~~~~~~al~~~ 68 (470)
..+|.++...+++++|+..++++++++
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 333444444444444444444443333
No 386
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.32 E-value=0.07 Score=49.70 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=90.0
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHH
Q psy16214 128 AFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVN 207 (470)
Q Consensus 128 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 207 (470)
.+..|+.-.|-..+..++...|..+......+.+...+|+|+.+...+..+-..-.....+...+-.....+|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34557777777777888888888888888888888888888888887776655544444555555566677888888888
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214 208 HFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR 264 (470)
Q Consensus 208 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 264 (470)
.-.-.+.-.-+++++...- +......|-++++...+++.+.++|.
T Consensus 379 ~a~~~l~~eie~~ei~~ia------------a~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVA------------AGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccccCChhheeee------------cccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8777776655555554443 55555667788888888888887765
No 387
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.28 E-value=0.0074 Score=33.34 Aligned_cols=32 Identities=38% Similarity=0.559 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPN 36 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 36 (470)
..++.+|..++..+++++|+..|+++++.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 57889999999999999999999999998885
No 388
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.25 E-value=0.047 Score=49.93 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=76.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhccc--------Ccc------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16214 238 EGNEKFVAGKNQEAFDIYTEALKIDAR--------NIN------INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (470)
.+...+++++|..|..-|..++++..+ .+. +.+.+-..+..||+++++.+-|+...-+.|.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 377777777777777777777765422 111 124556678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 304 LKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 304 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
..-+++.|.|+..+.+|.+|.+.+--+.=
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887766543
No 389
>KOG3192|consensus
Probab=96.17 E-value=0.0083 Score=46.34 Aligned_cols=73 Identities=25% Similarity=0.416 Sum_probs=56.1
Q ss_pred ccccchhhhccCCC--CCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214 353 SEVKDYYKILGVTK--NASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR 425 (470)
Q Consensus 353 ~~~~~~y~~lg~~~--~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~ 425 (470)
+...+||.++|... ...++.++.-|.....++||++-..+...+...+.+.-.++++||..|.||-+|++|=.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44567888886543 44555566578888999999986655555556788888999999999999999999954
No 390
>KOG3364|consensus
Probab=96.17 E-value=0.14 Score=39.15 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHhh-cCCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH
Q psy16214 151 SKTYKLMKAECLAHLN---RLQEAQEIANSILA-TDKQN-PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET 225 (470)
Q Consensus 151 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 225 (470)
.....+++|.++.... +..+.+.+++.+++ .+|.. -+..+.++..+++.++|+.++.+.+.+++..|++..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456778888888765 45678999999996 45543 4688899999999999999999999999999999988766
Q ss_pred HHHH
Q psy16214 226 YKRA 229 (470)
Q Consensus 226 ~~~~ 229 (470)
...+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 5433
No 391
>KOG4814|consensus
Probab=96.13 E-value=1.5 Score=42.88 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCch------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNV------AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIK 80 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 80 (470)
+.+.|...|+..+|..+++.|...+...|.+ +.....++.||+.+.+.+.|++.++.|-+.+|.++-.....-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 4555667777777777777777777665543 4556667777777777777777777777777777777777777
Q ss_pred HHHHcCChHHHHHHHHHHHhc
Q psy16214 81 CNIALGDAPTARSNLKALQEL 101 (470)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~l~~ 101 (470)
+....+.-++|+.+..+....
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 777777777777777666553
No 392
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.10 E-value=0.1 Score=40.78 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=69.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChH
Q psy16214 125 ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMD 203 (470)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 203 (470)
....+...+.+++...+..+--+.|+.+.+...-|.++...|+|.+|+..++.+....+..+...-.++.|+..+||.+
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 3344557888999999999889999999999999999999999999999999999988888888888899999888865
No 393
>KOG1538|consensus
Probab=96.10 E-value=1.2 Score=43.53 Aligned_cols=225 Identities=15% Similarity=0.056 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------------CchhHHHHHHHHHHHHcCChHHHHHHHHHHH------h
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVC-------------PNVAAYYGNRAACYMMLGMYTYALDDAKLAV------S 66 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al------~ 66 (470)
.|..+|+..+..=+++-|.+.|.+.-... .....--..+|..+.-.|++.+|.+.|.+.= +
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE 666 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALE 666 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence 47778888888888999998888764320 0111223457888888899999988887532 2
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH---
Q psy16214 67 LDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE--LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYL--- 141 (470)
Q Consensus 67 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~--- 141 (470)
+..+ --.+.+++-++..|..++-....++--+ .+-+.|. ..|..++..|+.++|+...
T Consensus 667 myTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---------------aAAEmLiSaGe~~KAi~i~~d~ 729 (1081)
T KOG1538|consen 667 MYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---------------AAAEMLISAGEHVKAIEICGDH 729 (1081)
T ss_pred HHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---------------HHHHHhhcccchhhhhhhhhcc
Confidence 1111 1123344444444444433333322111 1111111 1222334445555554422
Q ss_pred -------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214 142 -------DRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK 214 (470)
Q Consensus 142 -------~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 214 (470)
+-.-+++....+.+...+..+.....+.-|.++|.++-. .-.+..++...+++++|...-++.-+
T Consensus 730 gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 730 GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 122233344445555566666666666667666665432 12345567788899999888776655
Q ss_pred hCCChHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 215 LAPDHAKAKETYKR-AKLLKAKKEEGNEKFVAGKNQEAFDIYTEA 258 (470)
Q Consensus 215 ~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 258 (470)
.-|+- +..+.+ +...+...+.-.++.+.|+..+|...+++.
T Consensus 802 ~~~dV---y~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 802 FKDDV---YMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred ccccc---cchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 55543 222211 112222223344555556666666655554
No 394
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.09 E-value=0.12 Score=42.68 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHH
Q psy16214 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA 229 (470)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 229 (470)
..+..+|..|.+.|+.++|++.|.++....... .+.++.+..+.+..+++.....++.++-..... ..-|....++
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 466789999999999999999999987754332 457788888889999999999999888765433 1113333334
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214 230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262 (470)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 262 (470)
.... |..++..++|.+|...|-.++...
T Consensus 116 k~~~-----gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYE-----GLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHH-----HHHHHHhchHHHHHHHHHccCcCC
Confidence 4443 888888999999999998776443
No 395
>KOG3783|consensus
Probab=96.04 E-value=1.5 Score=42.04 Aligned_cols=71 Identities=18% Similarity=0.091 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCChhH
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEK---DPN----YLKALSRRCKCFHALGQ-YKECVIDAEKIYKMDNSREN 339 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p~~~~ 339 (470)
..--+..+|.++..+|+...|..++...++. ... .|.+++.+|..+..++. ..++..++.+|-+...+-+.
T Consensus 448 ~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~l 526 (546)
T KOG3783|consen 448 EGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYEL 526 (546)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccch
Confidence 3456777899999999999999999988843 112 27899999999999999 99999999999998876443
No 396
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.99 E-value=0.2 Score=41.42 Aligned_cols=102 Identities=13% Similarity=-0.020 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HH
Q psy16214 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN--YL----KA 306 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~ 306 (470)
..+.++|..|.+.|+.++|++.|.++...... +.....++.++..+....+++.....+..++-.+-.. +. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 34455699999999999999999998876543 2224678889999999999999999999998776322 22 23
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214 307 LSRRCKCFHALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p 335 (470)
....|..++..++|..|...|-.+..-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 44457777888999999988877765543
No 397
>KOG4814|consensus
Probab=95.99 E-value=1.8 Score=42.42 Aligned_cols=101 Identities=16% Similarity=0.084 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNINI--NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC 313 (470)
Q Consensus 236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (470)
.+.+.-.++..+|..+++.|...+..-|.+... .+....+++.||..+.+.+.|.+++++|-+.+|.++-.-...-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 344888899999999999999999877765421 367788899999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 314 FHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 314 ~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
....++-++|+.+..+......+
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHhcchHHHHHHHHHHHhhhcc
Confidence 99999999999999988776543
No 398
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.98 E-value=0.051 Score=49.72 Aligned_cols=91 Identities=19% Similarity=0.312 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC--------c-----h-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy16214 8 KEDGNTQYKLKQYSKALKCYSEAISVCP--------N-----V-----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDP 69 (470)
Q Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~-----~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 69 (470)
...|...+++++|..|+--|..++++.. . + ..+-..+..||+.+++.+-|+....+.|.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 3445667777777777777777776531 1 1 23456789999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214 70 RFSKGLIRQIKCNIALGDAPTARSNLKAL 98 (470)
Q Consensus 70 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 98 (470)
.+..-+++.|.|...+.+|.+|...+.-+
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776554
No 399
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91 E-value=0.7 Score=37.21 Aligned_cols=142 Identities=13% Similarity=0.050 Sum_probs=70.4
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCh--HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 162 LAHLNRLQEAQEIANSILATDKQNP--DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 162 ~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
+.+.+..++|+..|..+-+..-.+. -+.+..+.+....|+...|+..|..+-...|-. .....+.+++ .+
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~ARlr-------aa 139 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLARLR-------AA 139 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHHHHH-------HH
Confidence 3445555666666655554433332 234455566666666666666666655433321 1111111111 15
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFH 315 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (470)
..+...|-|+......+..- . +.+ .+...+...||.+-++.|++.+|..+|.+... +.+.+....+++.+.+
T Consensus 140 ~lLvD~gsy~dV~srvepLa-~-d~n-~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLA-G-DGN-PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHhccccHHHHHHHhhhcc-C-CCC-hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 55566666665544443321 1 111 11344455566666666666666666666554 4444555555555443
No 400
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.82 Score=44.16 Aligned_cols=122 Identities=20% Similarity=0.064 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHH-HH
Q psy16214 137 AMFYLDRAMDQGVASKTYKLMK--AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL-LL 213 (470)
Q Consensus 137 A~~~~~~~l~~~p~~~~~~~~~--a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l 213 (470)
++..+...+.++|.++.++... ...+...+....+......++..+|.+..+..+++.+....|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444444444443222 33333444444555555555555555555555555554444444333333332 44
Q ss_pred hhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214 214 KLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR 264 (470)
Q Consensus 214 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 264 (470)
...|++....... ......+......++..++.....++....|.
T Consensus 130 ~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~ 174 (620)
T COG3914 130 WLSPDNAEFLGHL------IRFYQLGRYLKLLGRTAEAELALERAVDLLPK 174 (620)
T ss_pred hcCcchHHHHhhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Confidence 4444444333221 11111344444444555555555555555554
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.89 E-value=0.13 Score=35.20 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
...+.|.-++...+.++|+..++++++..++.+. .-.++-.+..+|...|+|.+.+.+.-.-+.+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688888899999999999999988777543 4567777888899999999988876655543
No 402
>KOG3364|consensus
Probab=95.88 E-value=0.33 Score=37.16 Aligned_cols=79 Identities=13% Similarity=0.000 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHcCC---hHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214 37 VAAYYGNRAACYMMLGM---YTYALDDAKLAVS-LDPRF-SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE 111 (470)
Q Consensus 37 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 111 (470)
.....+++|.++....+ ..+-+..++..++ ..|.. -+..+.+|..+.++++|+.++.+.+.+++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 46678889999988765 5677888898886 45543 5678889999999999999999999999999999987654
Q ss_pred HHHH
Q psy16214 112 SKAL 115 (470)
Q Consensus 112 l~~~ 115 (470)
-..+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 4433
No 403
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.77 E-value=0.11 Score=35.52 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhH---HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAA---YYGNRAACYMMLGMYTYALDDAKLAVSL 67 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~g~~~~A~~~~~~al~~ 67 (470)
.+....+.|..++...+.++|+..++++++..++.+. ++-.+..+|...|+|.+++.+...-+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999998777654 4455567788889999988877655543
No 404
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.71 E-value=0.024 Score=47.45 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=34.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.+.++.+.|.+.|.+++.+.|.....|+++|....+.|+++.|.+.|++.++++|.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34555566666666666666666666666666666666666666666666666664
No 405
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.70 E-value=3.4 Score=43.55 Aligned_cols=138 Identities=20% Similarity=0.111 Sum_probs=83.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214 79 IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK 158 (470)
Q Consensus 79 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 158 (470)
-.++.....|+.|+..|+++-...|...+.+...-++- ....++|...-....+.+|+..|+++-. .|..+--+...
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 558 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLG--ITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGK 558 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhh--HHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhH
Confidence 34556666777788888877777776654432221110 0012222222222357778888776543 45666667889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC-----ChHHHHHHHHHHHhhCCCh
Q psy16214 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD-----KMDLAVNHFQLLLKLAPDH 219 (470)
Q Consensus 159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~ 219 (470)
|.+|..+|++++-++++.-+++..|++|.+-...-.+.+++. +...|....--++...|..
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999875444433333221 2233444444444455543
No 406
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.93 Score=43.80 Aligned_cols=144 Identities=13% Similarity=-0.005 Sum_probs=108.0
Q ss_pred hcCCHH-HHHHHHHHHhhcCCchhHHHHH--HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214 16 KLKQYS-KALKCYSEAISVCPNVAAYYGN--RAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR 92 (470)
Q Consensus 16 ~~g~~~-~A~~~~~~al~~~p~~~~~~~~--~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 92 (470)
..+... -++..+...+..+|.++..+.. ++..+...+....+...+..++..+|.+..+..+++.+....|....+.
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 42 NAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred cccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 334444 3777777778888888776444 4777778889989999999999999999999999999988888877777
Q ss_pred HHHHH-HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy16214 93 SNLKA-LQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL 165 (470)
Q Consensus 93 ~~~~~-~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 165 (470)
..+.. +....|++......+...+. .+++ .-..++..++...+.++....|..+.+...+.....+.
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~-----~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIRFYQ-LGRY-----LKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHHHHH-HHHH-----HHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 76665 88889999888777766654 3333 33347778888888888888888877666555553333
No 407
>KOG1258|consensus
Probab=95.64 E-value=2.4 Score=41.29 Aligned_cols=61 Identities=11% Similarity=-0.040 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 55 TYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 55 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
+.+...|...+...|...-.|...|..-.++|..+.+.++|++++.--|.....|..+-..
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5556667777778898888899999999999999999999999999888777776554443
No 408
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.63 E-value=0.022 Score=47.66 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=34.7
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q psy16214 49 MMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP 106 (470)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 106 (470)
...++.+.|.+.+.+++.+-|.+...|+++|....+.|+++.|...|.+.++++|.+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3445555666666666666666666666666666666666666666666666665543
No 409
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.11 Score=45.13 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKR 348 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~ 348 (470)
......++=.++...++++.|..+.++.+.++|.++.-+.-+|.+|.++|-+.-|+..++..++..|+......++....
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 45667777888899999999999999999999999999999999999999999999999999999999777777766655
Q ss_pred Hhh
Q psy16214 349 LLK 351 (470)
Q Consensus 349 ~~~ 351 (470)
.++
T Consensus 260 ~l~ 262 (269)
T COG2912 260 ELR 262 (269)
T ss_pred HHH
Confidence 554
No 410
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=1.6 Score=38.18 Aligned_cols=282 Identities=15% Similarity=0.112 Sum_probs=158.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC--------chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214 8 KEDGNTQYKLKQYSKALKCYSEAISVCP--------NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI 79 (470)
Q Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 79 (470)
.++|+...+.+++++|+..|.+.+.... ....+...++..|...|++..--+..... .++|...+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s-------re~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS-------REAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh-------HHHHHHhc
Confidence 6788899999999999999999987621 12456778888888888876544433222 22222111
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 80 KCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA 159 (470)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 159 (470)
. .+..+..+..++..|..++.......+.... .+.|.. +-...++. ..-..++
T Consensus 80 k--------~k~~KiirtLiekf~~~~dsl~dqi~v~~~~--iewA~r--------Ekr~fLr~---------~Le~Kli 132 (421)
T COG5159 80 K--------PKITKIIRTLIEKFPYSSDSLEDQIKVLTAL--IEWADR--------EKRKFLRL---------ELECKLI 132 (421)
T ss_pred c--------hhHHHHHHHHHHhcCCCCccHHHHHHHHHHH--HHHHHH--------HHHHHHHH---------HHHHHHH
Confidence 1 1122334444444444333222111111110 110100 00011111 2234577
Q ss_pred HHHHHcCCHHHHHHHHHHHhhc------CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhh-----CCChHHHHHHHHH
Q psy16214 160 ECLAHLNRLQEAQEIANSILAT------DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL-----APDHAKAKETYKR 228 (470)
Q Consensus 160 ~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~ 228 (470)
.+++..|.|.+|+.....++.. .|+-..++..-..+|....+..++...+..+-.. .|....+..
T Consensus 133 ~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l---- 208 (421)
T COG5159 133 YLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL---- 208 (421)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH----
Confidence 7889999999999888776542 2444667778888888888888887777655432 232222111
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc---Cc-cchHHHHHHHHHHHHHcCCHHHHHHH--HHHHHH-hCC
Q psy16214 229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR---NI-NINSKLLHNRATVLFKMGKYNEAIAD--CTLALE-KDP 301 (470)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~-~~~~~~~~~la~~~~~~g~~~~A~~~--~~~al~-~~p 301 (470)
..+ -|..+....+|.-|..+|-++++-... +. ...+.-|..+..+.. +..++-... -...++ .+.
T Consensus 209 -DL~-----sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~~y~~ 280 (421)
T COG5159 209 -DLL-----SGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIML--NRREEVKAVLRNKNTLKHYDD 280 (421)
T ss_pred -HHh-----ccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH--hhHHHHHHHHccchhHhhhhh
Confidence 111 167777888999999999998864322 11 111222333444433 333333222 223333 345
Q ss_pred CCHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhcCC
Q psy16214 302 NYLKALSRRCKCFH--ALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 302 ~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~p 335 (470)
....++...+.++. .+.+|..|+..|+.-+--+|
T Consensus 281 r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 281 RMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred hhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 55777777787775 46788889888888776665
No 411
>KOG2422|consensus
Probab=95.33 E-value=1.5 Score=42.26 Aligned_cols=141 Identities=16% Similarity=0.069 Sum_probs=84.2
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----cCC----------------CChH---HHHHHHHHHhccC
Q psy16214 145 MDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA-----TDK----------------QNPD---AVFVRGLCLYYDD 200 (470)
Q Consensus 145 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~p----------------~~~~---~~~~la~~~~~~g 200 (470)
+...|-....++.++.+...+|+.+-|..+.++++= ..| .+-. +++..-..+...|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344678888888889999999998888877777652 111 1111 2223334445678
Q ss_pred ChHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHH-----HhhcccCccchHHHH
Q psy16214 201 KMDLAVNHFQLLLKLAPD-HAKAKETYKRAKLLKAKKEEGNE-KFVAGKNQEAFDIYTEA-----LKIDARNININSKLL 273 (470)
Q Consensus 201 ~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a-----l~~~p~~~~~~~~~~ 273 (470)
-+..|.+.++-++.++|. ++.+...+ ..+ .++..+|+=-+..++.. +..-|+-. .-
T Consensus 357 C~rTA~E~cKlllsLdp~eDPl~~l~~------------ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-----yS 419 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPSEDPLGILYL------------IDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-----YS 419 (665)
T ss_pred ChHHHHHHHHHHhhcCCcCCchhHHHH------------HHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-----HH
Confidence 888888888888888887 66554443 222 23334444444444433 23334421 12
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q psy16214 274 HNRATVLFKMGK---YNEAIADCTLALEKDPN 302 (470)
Q Consensus 274 ~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 302 (470)
..+|..|..... -..|+..+.+|+.+.|.
T Consensus 420 ~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 420 LALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 334555555554 45677888888887774
No 412
>KOG2422|consensus
Probab=95.32 E-value=2 Score=41.51 Aligned_cols=100 Identities=21% Similarity=0.129 Sum_probs=73.9
Q ss_pred cCCHHHHHHHHHHHhhc------------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------
Q psy16214 17 LKQYSKALKCYSEAISV------------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL----------------- 67 (470)
Q Consensus 17 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------------- 67 (470)
...|++|...|.-++.. .|-+...+..++.+...+|+.+-|....+++|=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45678888888877654 3455888999999999999998888877776531
Q ss_pred ----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Q psy16214 68 ----DPRF---SKGLIRQIKCNIALGDAPTARSNLKALQELDPD-NPAIAQESKALE 116 (470)
Q Consensus 68 ----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~ 116 (470)
.|.+ ..+++..-..+.+.|-+..|.++.+-+++++|. +|-....+..++
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence 2222 224455556677889999999999999999998 777655555543
No 413
>KOG0546|consensus
Probab=95.24 E-value=0.034 Score=49.71 Aligned_cols=114 Identities=24% Similarity=0.259 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcc---c------------CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16214 237 EEGNEKFVAGKNQEAFDIYTEALKIDA---R------------NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301 (470)
Q Consensus 237 ~~~~~~~~~~~~~~A~~~~~~al~~~p---~------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (470)
+.+...++.+++..|..-|.+++..-. . -.........+++.+-.+.+.+..|+.....++..++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 347788899999999998888874321 1 0111234566788999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHh
Q psy16214 302 NYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLL 350 (470)
Q Consensus 302 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~ 350 (470)
....+++.++..+..+.++++|.+.++.+....|+ ..+.+.+.......
T Consensus 307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999998 55555554444433
No 414
>KOG4151|consensus
Probab=95.16 E-value=0.15 Score=50.77 Aligned_cols=113 Identities=34% Similarity=0.499 Sum_probs=94.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK--MGKYNEAIADCTLALEKDPNYLKALSRRCKC 313 (470)
Q Consensus 236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (470)
..+++.+++.+++..|.--|..++.+.|.+....+....+.+.++.. ++++..++..+.-++...|....++..++.+
T Consensus 57 ~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~ 136 (748)
T KOG4151|consen 57 KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARK 136 (748)
T ss_pred HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhH
Confidence 44589999999999999999999999997665567777788877765 4689999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCh-hHHHHHHHHHH
Q psy16214 314 FHALGQYKECVIDAEKIYKMDNSR-ENHNFLEEAKR 348 (470)
Q Consensus 314 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~ 348 (470)
|..++.++-|++...-...+.|+. ++.+.+.+.+.
T Consensus 137 y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ 172 (748)
T KOG4151|consen 137 YEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG 172 (748)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 999999999999999999999983 44444433333
No 415
>KOG0431|consensus
Probab=95.12 E-value=0.066 Score=51.10 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCc--cHHhhHHHHHHHHHHHHHHhhc
Q psy16214 337 RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNA--TQAQKLEQEKLFKEVGEAYGIL 414 (470)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~--~~~~~~~~~~~~~~i~~ay~~l 414 (470)
..++.+|.-.+..|-... =++-..+..-.++..+||+|||++|..||||.... +...|-.+++.|-.+.+|+...
T Consensus 372 ~NIRALLSTLh~VLW~es---~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 372 GNIRALLSTLHYVLWPES---GWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred ccHHHHHHHHhHhhcCcc---CcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 455666655555443311 13445556667889999999999999999998874 4567777899999999998754
No 416
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.10 E-value=1.1 Score=38.43 Aligned_cols=74 Identities=16% Similarity=0.116 Sum_probs=51.5
Q ss_pred HHHHHhcCCH-------HHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHH
Q psy16214 239 GNEKFVAGKN-------QEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL-KALS 308 (470)
Q Consensus 239 ~~~~~~~~~~-------~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~ 308 (470)
+.+|...++. ..|++.|.+++..... .......+.+.+|.+..+.|++++|+.++.+++.....+. ..+.
T Consensus 125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~ 204 (214)
T PF09986_consen 125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLK 204 (214)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 7777777774 4566666666654332 2222467889999999999999999999999998643332 3555
Q ss_pred HHHH
Q psy16214 309 RRCK 312 (470)
Q Consensus 309 ~la~ 312 (470)
.+|+
T Consensus 205 ~~AR 208 (214)
T PF09986_consen 205 DMAR 208 (214)
T ss_pred HHHH
Confidence 4444
No 417
>KOG0546|consensus
Probab=95.03 E-value=0.058 Score=48.34 Aligned_cols=112 Identities=24% Similarity=0.219 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-----------c--------hhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCP-----------N--------VAAYYGNRAACYMMLGMYTYALDDAKLAV 65 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~~a~~~~~~g~~~~A~~~~~~al 65 (470)
+.....|+..++.++|..|..-|.+++..-. + -.....+++.+-+..+.+..|+.....++
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence 3455677889999999999999998875311 1 13455678889999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214 66 SLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116 (470)
Q Consensus 66 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 116 (470)
..++....+++.++..+..+.++++|++.+..+....|++..+...+....
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999988766555543
No 418
>KOG1464|consensus
Probab=94.96 E-value=2.2 Score=37.04 Aligned_cols=224 Identities=11% Similarity=0.062 Sum_probs=123.1
Q ss_pred cCCHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214 17 LKQYSKALKCYSEAISVCPNV----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR 92 (470)
Q Consensus 17 ~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 92 (470)
..+.++|+..|++++++.|.. ..++-.+..+++++++|++-+..|.+.+.. ..-| ...+-.++.+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY--------IkSA---VTrNySEKsI 108 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY--------IKSA---VTRNYSEKSI 108 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--------HHHH---HhccccHHHH
Confidence 457899999999999998874 457778888999999999999988887642 1100 1111112222
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCH
Q psy16214 93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT----YKLMKAECLAHLNRL 168 (470)
Q Consensus 93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~~~~ 168 (470)
...-..+.... +... +.. -|+..+..+..+ .+.. ....+|.+++..++|
T Consensus 109 N~IlDyiStS~-~m~L---LQ~------------------FYeTTL~ALkdA-----KNeRLWFKTNtKLgkl~fd~~e~ 161 (440)
T KOG1464|consen 109 NSILDYISTSK-NMDL---LQE------------------FYETTLDALKDA-----KNERLWFKTNTKLGKLYFDRGEY 161 (440)
T ss_pred HHHHHHHhhhh-hhHH---HHH------------------HHHHHHHHHHhh-----hcceeeeeccchHhhhheeHHHH
Confidence 22222221110 0000 000 011111111111 1111 123477777777777
Q ss_pred HHHHHHHHHHhhcCCC------------ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Q psy16214 169 QEAQEIANSILATDKQ------------NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKK 236 (470)
Q Consensus 169 ~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 236 (470)
.+-.++++++-..... -.+++..-...|..+.+-.+-...|++++.+...-+... .++.+....
T Consensus 162 ~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECG--- 237 (440)
T KOG1464|consen 162 TKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECG--- 237 (440)
T ss_pred HHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcC---
Confidence 7666666554332211 123455555667777777777778888887654332221 222222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcccCcc---chHHHHHHHHHHHHHcC
Q psy16214 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNIN---INSKLLHNRATVLFKMG 284 (470)
Q Consensus 237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~la~~~~~~g 284 (470)
|..+++.|+|++|-.-|-+|++....... ....-|..+|..+.+.|
T Consensus 238 --GKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 238 --GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred --CccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 77888999999999888888865332211 11233455666666655
No 419
>KOG1839|consensus
Probab=94.87 E-value=0.33 Score=51.27 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=117.2
Q ss_pred HHHHHHHHHcCCHHHHHH------HHHH-HhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC--------CChH
Q psy16214 156 LMKAECLAHLNRLQEAQE------IANS-ILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA--------PDHA 220 (470)
Q Consensus 156 ~~~a~~~~~~~~~~~A~~------~~~~-~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~ 220 (470)
...+......+.+.+|.+ .+.. .-.+.|.....+..++.++...++.++|+..-.++.-+. |+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 445566666777887777 4442 334578888999999999999999999999877764322 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214 221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTL 295 (470)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (470)
..+.. .+...+..++...|+..+.++..+ .|..|. .+.+..+++.++...++++.|+.+.+.
T Consensus 1016 ~~y~n------------lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~-~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1016 LAYGN------------LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPP-TALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred HHhhH------------HHHHHHhccCccchhhhHHHHHHhhccccCCCCCc-hhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 22323 367777778888898888888744 344443 466678899999999999999999999
Q ss_pred HHHhCCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 296 ALEKDPN--------YLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 296 al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
|+..+.. ....+..+++.+..++++..|+...+....+.
T Consensus 1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIY 1129 (1236)
T ss_pred HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHH
Confidence 9986322 24455666777777777777766666665544
No 420
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.85 E-value=0.08 Score=46.49 Aligned_cols=90 Identities=14% Similarity=0.065 Sum_probs=77.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHH-HHHHHhccCChHHHHHHHHHHHhhCCC
Q psy16214 140 YLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFV-RGLCLYYDDKMDLAVNHFQLLLKLAPD 218 (470)
Q Consensus 140 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~p~ 218 (470)
.+.++-...|+++..|...+......+-+.+--..|.++++.+|.+++.|.. -+.-+...++++.+...+.++++++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445556678999999999988888999999999999999999999999987 556677889999999999999999999
Q ss_pred hHHHHHHHHHH
Q psy16214 219 HAKAKETYKRA 229 (470)
Q Consensus 219 ~~~~~~~~~~~ 229 (470)
++..|..+-+.
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 99998766443
No 421
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.85 E-value=0.079 Score=31.48 Aligned_cols=29 Identities=34% Similarity=0.351 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 271 KLLHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
.++.++|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34566666666666666666666666654
No 422
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.82 E-value=0.35 Score=35.19 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=40.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcccCcc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 241 EKFVAGKNQEAFDIYTEALKIDARNIN-----INSKLLHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 241 ~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
.....+++.+|++.+.+.+........ ....+..++|.++...|++++|+..+++++++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345678888888888887765443222 12455667777777777777777777777766
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.78 E-value=0.21 Score=36.30 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=52.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy16214 280 LFKMGKYNEAIADCTLALEKDPN---------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEA 346 (470)
Q Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~ 346 (470)
..+.|+|.+|++.+.+....... ...++.++|.++...|++++|+..+++++++.....-...|..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~a 83 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYA 83 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 45789999999988888776322 24678889999999999999999999999987654434444443
No 424
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.73 E-value=0.079 Score=46.55 Aligned_cols=89 Identities=12% Similarity=0.012 Sum_probs=76.7
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCC
Q psy16214 27 YSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIR-QIKCNIALGDAPTARSNLKALQELDPDN 105 (470)
Q Consensus 27 ~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~p~~ 105 (470)
|.++-...|+++..|...+..-...+-|.+--..|.+++..+|.+++.|.. .+.-+...++++.+...+.+++..+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334445567889999998888888999999999999999999999999987 6667888899999999999999999999
Q ss_pred hHHHHHHHHH
Q psy16214 106 PAIAQESKAL 115 (470)
Q Consensus 106 ~~~~~~l~~~ 115 (470)
|.+|...-.+
T Consensus 176 p~iw~eyfr~ 185 (435)
T COG5191 176 PRIWIEYFRM 185 (435)
T ss_pred chHHHHHHHH
Confidence 9998766554
No 425
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.59 E-value=0.083 Score=31.36 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 304 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
..++.++|.+|...|++++|..++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999999864
No 426
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.57 E-value=3.1 Score=36.89 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q psy16214 104 DNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFY----LDRAMDQGVASKTYKLMKAEC-LAHLNRLQEAQEIANSI 178 (470)
Q Consensus 104 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~----~~~~l~~~p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~ 178 (470)
.++..+..++..+...+.+..|..++-.+....+... ........|.....+..++.+ |...++...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3456666666666666666666666666655555443 122234466777777666654 56679999998877666
Q ss_pred hhc
Q psy16214 179 LAT 181 (470)
Q Consensus 179 l~~ 181 (470)
++.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 427
>KOG1839|consensus
Probab=94.56 E-value=0.42 Score=50.55 Aligned_cols=173 Identities=16% Similarity=0.107 Sum_probs=108.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHH------HHHHHh-hcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALK------CYSEAI-SVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-------- 67 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~------~~~~al-~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------- 67 (470)
.+....+.|......+.+.+|.+ ++.... ...|.....+..++..+..++++++|+....++.-+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 34556777888888888887777 444222 346777888888899999999999988887776554
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214 68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ 147 (470)
Q Consensus 68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 147 (470)
.|+....+..++......++...|...+.++..+.-- . .-..
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L-------------------------s-------------~ge~ 1052 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL-------------------------S-------------SGED 1052 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc-------------------------c-------------cCCC
Confidence 2344566777777777777777777766666542100 0 0012
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--------ChHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy16214 148 GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ--------NPDAVFVRGLCLYYDDKMDLAVNHFQLLL 213 (470)
Q Consensus 148 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~l 213 (470)
.|.......++..++...++++.|+.+++.++..... ....+..++.+....+++..|+...+...
T Consensus 1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 3444445555666666777778888888777764321 23345555566655666655555544433
No 428
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=3 Score=36.62 Aligned_cols=209 Identities=13% Similarity=0.025 Sum_probs=124.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHH---HHhhcC--CCChHH
Q psy16214 122 FEGASKAFEANDYRTAMFYLDRAMDQGVA--------SKTYKLMKAECLAHLNRLQEAQEIAN---SILATD--KQNPDA 188 (470)
Q Consensus 122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~---~~l~~~--p~~~~~ 188 (470)
.+.|......+++++|+..+.+++..... .......++.+|...|++..--+... .+.... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 56677788889999999999998876221 22456778899999988765433332 222211 111111
Q ss_pred HHHHHH-HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc--cC
Q psy16214 189 VFVRGL-CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA--RN 265 (470)
Q Consensus 189 ~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~ 265 (470)
...+-. .-.....++.-+..+..+++......... ....-.......+++.|+|.+|+....-.+..-. ++
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~f------Lr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD 160 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKF------LRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDD 160 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC
Confidence 111111 11233445555666655555322111111 1112223347889999999999998887663211 11
Q ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEK-----DPNYLKAL--SRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
......++..-..+|....+..++...+..|-.. .|....+- ..-|..+..-.+|.-|..+|-.+++-...
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 1113456777788999998888887777766543 34333332 23356667778999999999999886654
No 429
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.35 Score=42.21 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
.++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+.-|+..++..++..|+.+.+-...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 34556678889999999999999999999999999999999999999999999999999999998876654
No 430
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.46 E-value=5 Score=38.71 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=87.9
Q ss_pred HHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHH
Q psy16214 128 AFEANDYRTAMFYLD--RAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLA 205 (470)
Q Consensus 128 ~~~~~~~~~A~~~~~--~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 205 (470)
.+-+++++++..... +.+..-| .......+..+.+.|-++.|+... .+++..+.++ ...|+.+.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHH
Confidence 344577777666654 2222222 344556777778888888887764 3455555554 577888888
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC
Q psy16214 206 VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK 285 (470)
Q Consensus 206 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~ 285 (470)
.+..+ ..+++..|..+ |...+..|+++-|.++|.++- + +..+..+|.-.|+
T Consensus 338 ~~~a~-----~~~~~~~W~~L------------g~~AL~~g~~~lAe~c~~k~~----d--------~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 338 LEIAK-----ELDDPEKWKQL------------GDEALRQGNIELAEECYQKAK----D--------FSGLLLLYSSTGD 388 (443)
T ss_dssp HHHCC-----CCSTHHHHHHH------------HHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-
T ss_pred HHHHH-----hcCcHHHHHHH------------HHHHHHcCCHHHHHHHHHhhc----C--------ccccHHHHHHhCC
Confidence 76653 23456677777 999999999999988888742 2 5556667777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214 286 YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI 330 (470)
Q Consensus 286 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 330 (470)
.+.-.+....+...... ...-.+++.+|+.++.++.+.+.
T Consensus 389 ~~~L~kl~~~a~~~~~~-----n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 389 REKLSKLAKIAEERGDI-----NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHHTT-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence 65555555554443221 12233455556666666555543
No 431
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.45 E-value=0.53 Score=41.64 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
...++..++..+...|+++.++..+++.+..+|-+-.+|..+-.+|...|+...|+..|++..+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34678888999999999999999999999999999999999999999999999999999988763
No 432
>KOG0529|consensus
Probab=94.30 E-value=1.8 Score=40.08 Aligned_cols=134 Identities=13% Similarity=0.042 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc----CChHHHH
Q psy16214 133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR--LQEAQEIANSILATDKQNPDAVFVRGLCLYYD----DKMDLAV 206 (470)
Q Consensus 133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~ 206 (470)
-.+.-+.+...++..+|++..+|..+..++.+.+. +..=+.+++++++.+|.+..+|..+=.+.... ....+-+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 45667788889999999999999999999987654 68889999999999999988877665554332 3356778
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc
Q psy16214 207 NHFQLLLKLAPDHAKAKETYKRAKLLK-AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN 267 (470)
Q Consensus 207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 267 (470)
.+..+++..++.+..+|.....+.... .....|. .+...-...-++....|+-.+|++..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~-~~~~~~l~sEle~v~saiFTdp~DqS 230 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN-FMPKELLQSELEMVHSAIFTDPEDQS 230 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCc-cCCHHHHHHHHHHHHHHHhcCccccc
Confidence 889999999999998887762221100 0000010 00011123445566667777787654
No 433
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.26 E-value=0.081 Score=30.70 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 305 KALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 305 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
+++..+|.+-+..++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888763
No 434
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.00 E-value=2.9 Score=40.27 Aligned_cols=125 Identities=11% Similarity=-0.021 Sum_probs=53.9
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 48 YMMLGMYTYALDDAKLAVSLDPRF-SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS 126 (470)
Q Consensus 48 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~ 126 (470)
....++++++....... ++-|.- ..-...++..+.+.|-++.|+.... ++... ++.
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~r------------FeL-- 327 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHR------------FEL-- 327 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHH------------HHH--
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHH------------hHH--
Confidence 34456666665555311 112222 2334455566666666666655432 12221 111
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH
Q psy16214 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV 206 (470)
Q Consensus 127 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 206 (470)
.++.|+.+.|.+... ..+++..|..+|...+..|+++-|..+|.++-. +-.+..+|...|+.+.=.
T Consensus 328 -Al~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 328 -ALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp -HHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHH
T ss_pred -HHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHH
Confidence 233455555443322 223455666666666666666666666665432 233444555555554333
Q ss_pred HHH
Q psy16214 207 NHF 209 (470)
Q Consensus 207 ~~~ 209 (470)
+..
T Consensus 394 kl~ 396 (443)
T PF04053_consen 394 KLA 396 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 435
>KOG4151|consensus
Probab=93.88 E-value=0.26 Score=49.12 Aligned_cols=114 Identities=32% Similarity=0.533 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc----hhHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCCHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN----VAAYYGNRAACYMM--LGMYTYALDDAKLAVSLDPRFSKGLIR 77 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (470)
+..+...|+.+++.++|..|.--|..++.+-|. .+....+.+.|++. .++|..++....-++...|....++..
T Consensus 53 a~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~ 132 (748)
T KOG4151|consen 53 ALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLK 132 (748)
T ss_pred HHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhh
Confidence 345678899999999999998888888888774 35667778888776 468999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214 78 QIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALET 117 (470)
Q Consensus 78 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 117 (470)
.+.+|..++.++-|++.+.-.....|.+..+.....++..
T Consensus 133 r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ 172 (748)
T KOG4151|consen 133 RARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG 172 (748)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 9999999999999999988888999999766654444443
No 436
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.23 E-value=0.29 Score=28.04 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKC 26 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~ 26 (470)
+.++..|-.++.+|+|++|+..
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHH
Confidence 3445555555555555555555
No 437
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.11 E-value=0.61 Score=41.27 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQEL 101 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 101 (470)
..++..++..+...++++.++..+++.+..+|.+..+|..+-..|...|+...|+..|+++-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 6677888999999999999999999999999999999999999999999999999999987663
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=92.82 E-value=5.1 Score=37.83 Aligned_cols=62 Identities=11% Similarity=0.009 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh--HHHHHH--HHHHHHcCChHHHHHHHHHHHhc
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA--AYYGNR--AACYMMLGMYTYALDDAKLAVSL 67 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~--a~~~~~~g~~~~A~~~~~~al~~ 67 (470)
.....+..++..++|..|...++.+...-|... ..+..+ |..++..-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445678888999999999999999887533332 233333 45556788899999999887764
No 439
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.78 E-value=13 Score=38.01 Aligned_cols=90 Identities=8% Similarity=-0.009 Sum_probs=60.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY--------------- 303 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------------- 303 (470)
.......++++.+...+...- ......+...+.+|.++..+|+.++|...|+++... .+.
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~----~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~ 393 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLP----MEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPL 393 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcC----HhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCC
Confidence 344557788887777666632 211124567888899888899999999998887532 110
Q ss_pred -------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 304 -------------LKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 304 -------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
.......+..+..+|+...|...+..++..
T Consensus 394 ~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 394 KIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred CCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 012355677778888888888888887775
No 440
>KOG3807|consensus
Probab=92.66 E-value=7.4 Score=35.04 Aligned_cols=174 Identities=13% Similarity=0.005 Sum_probs=91.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHH-------------HHHH
Q psy16214 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK-------------AKET 225 (470)
Q Consensus 159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------------~~~~ 225 (470)
.....+..+..+-++....+++++|....++..++.-- .--..+|.+.++++++....... +...
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~r 268 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLR 268 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhh
Confidence 33344445555555666666666666666555554321 12233455555555442211100 0000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Q psy16214 226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD-PNYL 304 (470)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 304 (470)
.......-.....+.+..++|+..+|++.++...+..|-.. ...++-++-.++..+.-|.+....+-+.-++. |..+
T Consensus 269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t--~lniheNLiEalLE~QAYADvqavLakYDdislPkSA 346 (556)
T KOG3807|consen 269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLT--MLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSA 346 (556)
T ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchH
Confidence 00000011112238888999999999999999887777422 23566777777777776666655555544432 4443
Q ss_pred HHHHHHHHHHH-------------HhC---CHHHHHHHHHHHHhcCCC
Q psy16214 305 KALSRRCKCFH-------------ALG---QYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 305 ~~~~~la~~~~-------------~~g---~~~~A~~~~~~a~~~~p~ 336 (470)
...+.-+.+-. +.| --..|++...++++.+|.
T Consensus 347 ~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPH 394 (556)
T KOG3807|consen 347 AICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPH 394 (556)
T ss_pred HHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCC
Confidence 33332222111 111 123578888888888886
No 441
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.51 E-value=0.24 Score=28.76 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214 40 YYGNRAACYMMLGMYTYALDDAKLAVSL 67 (470)
Q Consensus 40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~ 67 (470)
++..+|.+-+..++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444455555555555555555555443
No 442
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.44 E-value=0.46 Score=27.24 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChHHHHHH--HHHHHhcCC
Q psy16214 40 YYGNRAACYMMLGMYTYALDD--AKLAVSLDP 69 (470)
Q Consensus 40 ~~~~~a~~~~~~g~~~~A~~~--~~~al~~~p 69 (470)
.++.+|..+...|++++|+.. |.-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 345555555666666666665 224444444
No 443
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.24 E-value=2 Score=35.85 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHH
Q psy16214 245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAI 290 (470)
Q Consensus 245 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~ 290 (470)
..+.++|+.++-+++++.+.+..+++.++..|+.++..+|+++.|-
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566666666666666655554445666666666666666666653
No 444
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.08 E-value=0.24 Score=25.91 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q psy16214 74 GLIRQIKCNIALGDAPTARSNL 95 (470)
Q Consensus 74 ~~~~la~~~~~~g~~~~A~~~~ 95 (470)
+.+.+|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555544
No 445
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.07 E-value=0.22 Score=26.04 Aligned_cols=21 Identities=14% Similarity=-0.045 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHH
Q psy16214 307 LSRRCKCFHALGQYKECVIDA 327 (470)
Q Consensus 307 ~~~la~~~~~~g~~~~A~~~~ 327 (470)
.+.+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344444444445544444443
No 446
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.2 Score=41.26 Aligned_cols=58 Identities=36% Similarity=0.466 Sum_probs=50.4
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCC--ccHHhhHHHHHHHHHHHHHHhh
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTN--ATQAQKLEQEKLFKEVGEAYGI 413 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~--~~~~~~~~~~~~~~~i~~ay~~ 413 (470)
.+.|.+|++.......+|+++|+++...+|||+... .+.+.-+.++++++++.++|+.
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 577999999999999999999999999999997665 3456667789999999999974
No 447
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.93 E-value=4.9 Score=33.93 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=53.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
.-+++.+...+|+...+.-++..|.+......+-.++.-.|++++|...++-+-.+.|+.......+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~ly 75 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLY 75 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHH
Confidence 3466778888888888888888888888888888888888999999888888888888876554443
No 448
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=6.5 Score=34.48 Aligned_cols=88 Identities=17% Similarity=0.028 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHH--------cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CChHHH
Q psy16214 22 KALKCYSEAISVCPNVAAYYGNRAACYMM--------LGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL--GDAPTA 91 (470)
Q Consensus 22 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A 91 (470)
.|++.-...+..+|....+|..+-.+... .--.+.-+..+..+++-+|.+...|...-.++... .++..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence 45555555555555555555444443333 11123334445555555555555555444444333 334444
Q ss_pred HHHHHHHHhcCCCChHHH
Q psy16214 92 RSNLKALQELDPDNPAIA 109 (470)
Q Consensus 92 ~~~~~~~l~~~p~~~~~~ 109 (470)
....++.++.++.|-..|
T Consensus 130 l~itkklld~DsrNyH~W 147 (328)
T COG5536 130 LFITKKLLDSDSRNYHVW 147 (328)
T ss_pred HHHHHHHhccccccccee
Confidence 445555555555554443
No 449
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.75 E-value=0.55 Score=28.33 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 308 SRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 308 ~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
+.+|.+|..+|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566667777777777777776664
No 450
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.73 E-value=9.1 Score=33.99 Aligned_cols=131 Identities=11% Similarity=0.105 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH---HHHH------HHHHHHHHH-HHHHHhcCCHHHHHH
Q psy16214 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET---YKRA------KLLKAKKEE-GNEKFVAGKNQEAFD 253 (470)
Q Consensus 184 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~---~~~~------~~~~~~~~~-~~~~~~~~~~~~A~~ 253 (470)
.+++.+..+|..++..+++.+|..+|-.. +++..... +... .....+..+ ...|.-.++...|..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANE 162 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHH
Confidence 56889999999999999999998887432 11111111 0000 001111111 445667789998888
Q ss_pred HHHHHHhh----cccC-------ccchHHH-HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214 254 IYTEALKI----DARN-------ININSKL-LHNRATVLFKMGK---YNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318 (470)
Q Consensus 254 ~~~~al~~----~p~~-------~~~~~~~-~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 318 (470)
.+...++. .|+- +...+.+ +..+-..-++.++ +..-.+.|...|+.+|.....+..+|..|....
T Consensus 163 ~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 163 LFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence 77766654 3320 0001111 1111111223333 223334444455566777778888888887654
Q ss_pred C
Q psy16214 319 Q 319 (470)
Q Consensus 319 ~ 319 (470)
.
T Consensus 243 ~ 243 (260)
T PF04190_consen 243 P 243 (260)
T ss_dssp S
T ss_pred C
Confidence 3
No 451
>KOG2063|consensus
Probab=91.53 E-value=20 Score=37.54 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCCChHHHHHH-
Q psy16214 40 YYGNRAACYMMLGMYTYALDDAKLAVS----LDPRFSKGLIRQIKCNIALGDA--PTARSNLKALQELDPDNPAIAQES- 112 (470)
Q Consensus 40 ~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~l- 112 (470)
-+..++..|...|.+++|++.+..... .++.....+-..-..+..++.. +-..++-.-.++.+|....-...-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 356677788888888888888888776 3344444555555555555555 555666565665555432110000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q psy16214 113 KALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA-SKTYKLMKAECL 162 (470)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~ 162 (470)
-......-.......++......-++.+++.++..+.. ....+..++..|
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly 636 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY 636 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH
Confidence 00000000122334456667777778888888777555 333333344443
No 452
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.40 E-value=5.7 Score=33.58 Aligned_cols=56 Identities=7% Similarity=0.084 Sum_probs=28.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-++.|+
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 34444455555555555555555544444555555555555555555555555554
No 453
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.37 E-value=1.2 Score=39.21 Aligned_cols=62 Identities=27% Similarity=0.227 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
.++...+..|...|.+.+|++++++++.++|-+...+..+-.++..+|+--.|.+.|++.-+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44556688899999999999999999999999999999999999999999999988887653
No 454
>KOG2581|consensus
Probab=91.33 E-value=12 Score=34.75 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcC--C--CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCCh
Q psy16214 154 YKLMKAECLAHLNRLQEAQEIANSILATD--K--QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH 219 (470)
Q Consensus 154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 219 (470)
+...+-+.|+..+.|+.|.....+..--. . ..+..++.+|.+..-+++|..|.+++-.|+...|.+
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 34456677888888888888887765211 1 224577888999999999999999999999999984
No 455
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.28 E-value=15 Score=35.47 Aligned_cols=197 Identities=12% Similarity=0.016 Sum_probs=113.2
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16214 53 MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAN 132 (470)
Q Consensus 53 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 132 (470)
++.-....+.+.+... .+-.+++.++.||... ..++-...++++++.+=++...-..++..+ ++.
T Consensus 81 k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-------------Eki 145 (711)
T COG1747 81 KNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY-------------EKI 145 (711)
T ss_pred HHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH-------------HHh
Confidence 3444455666666654 4567888999999888 567778888888888877777666666553 334
Q ss_pred CHHHHHHHHHHHHHhC-CC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CChHHHH-HHHHHHhccCChHH
Q psy16214 133 DYRTAMFYLDRAMDQG-VA--S---KTYKLMKAECLAHLNRLQEAQEIANSILATDK-QNPDAVF-VRGLCLYYDDKMDL 204 (470)
Q Consensus 133 ~~~~A~~~~~~~l~~~-p~--~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~-~la~~~~~~g~~~~ 204 (470)
+-+.+..+|.+++... |. + .++|..+-. +--.+.+.-+....++-.... ....+.+ ..-.-|....++.+
T Consensus 146 k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 146 KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 5555666666665442 11 1 112211111 112233333333333322211 1122222 22244566788999
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc
Q psy16214 205 AVNHFQLLLKLAPDHAKAKETYKRA--------KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI 266 (470)
Q Consensus 205 A~~~~~~~l~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 266 (470)
|+..+...++.+..+..+...+-.. ..+..+....++-..-.++.+++.-|++.+..+..+.
T Consensus 224 ai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 224 AIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence 9999999999988877665543111 1223333334444445678889999998887766543
No 456
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.15 E-value=8.1 Score=36.47 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh--------hcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214 155 KLMKAECLAHLNRLQEAQEIANSIL--------ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK 214 (470)
Q Consensus 155 ~~~~a~~~~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 214 (470)
...+.+++.-+|+|..|++.++.+- +..+-+...++..|.+|+.+++|.+|+..|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888999999999887541 11233466889999999999999999999988774
No 457
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=91.14 E-value=11 Score=34.02 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc--------------------------CChHHHHHHHHHHHhhC-CChH
Q psy16214 168 LQEAQEIANSILATDKQNPDAVFVRGLCLYYD--------------------------DKMDLAVNHFQLLLKLA-PDHA 220 (470)
Q Consensus 168 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------------------g~~~~A~~~~~~~l~~~-p~~~ 220 (470)
-++|+.+-.-+..+.|..++++-.++.+.+.. +-.+++...+.+++... |.-.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 46777777777788888888777776665432 11356666777776644 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q psy16214 221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK- 299 (470)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 299 (470)
.....+ ... .. .......-+|..-..+|.-...+.|+. .+-.|++.+..+..-...++...+-....
T Consensus 292 qlqAAI---aa~---HA-~a~~aedtDW~~I~aLYdaL~~~apSP-----vV~LNRAVAla~~~Gp~agLa~ve~L~~~~ 359 (415)
T COG4941 292 QLQAAI---AAL---HA-RARRAEDTDWPAIDALYDALEQAAPSP-----VVTLNRAVALAMREGPAAGLAMVEALLARP 359 (415)
T ss_pred HHHHHH---HHH---HH-hhcccCCCChHHHHHHHHHHHHhCCCC-----eEeehHHHHHHHhhhHHhHHHHHHHhhccc
Confidence 221111 000 00 001122347777778888777777763 34667777777777777888877766554
Q ss_pred -CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHH
Q psy16214 300 -DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFL 343 (470)
Q Consensus 300 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l 343 (470)
-..+...+-.+|..+.++|+.++|...|++++.+.++.....+|
T Consensus 360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 34456677889999999999999999999999999985544444
No 458
>KOG2114|consensus
Probab=90.78 E-value=4.7 Score=40.93 Aligned_cols=161 Identities=17% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChHH
Q psy16214 12 NTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-DPRFSKGLIRQIKCNIALGDAPT 90 (470)
Q Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~ 90 (470)
..+++..-|+-|+.+-+.--.-...-...+...|.-++..|++++|...|-+++.. +|...--.+ ....+..+
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~Ikn 415 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQRIKN 415 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHHHHH
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCC-------HHHHHH------HHHHHHHhCCCCHHHHHH
Q psy16214 91 ARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAND-------YRTAMF------YLDRAMDQGVASKTYKLM 157 (470)
Q Consensus 91 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~A~~------~~~~~l~~~p~~~~~~~~ 157 (470)
-..+++.+.+..-.+.+-...|-.+|...+..+.-..++..++ .+.|++ +++.+.-+......--..
T Consensus 416 Lt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~v 495 (933)
T KOG2114|consen 416 LTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWV 495 (933)
T ss_pred HHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHH
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q psy16214 158 KAECLAHLNRLQEAQEIANSI 178 (470)
Q Consensus 158 ~a~~~~~~~~~~~A~~~~~~~ 178 (470)
+-.++...++|++|+.++..+
T Consensus 496 l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 496 LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcCHHHHHHHHhcC
No 459
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=90.59 E-value=4.6 Score=34.73 Aligned_cols=112 Identities=14% Similarity=0.074 Sum_probs=71.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcccCcc--------chHHHHHHHHHHHHHcCCHHH-H-HHHHHHHHHh--CCCC--HHH
Q psy16214 241 EKFVAGKNQEAFDIYTEALKIDARNIN--------INSKLLHNRATVLFKMGKYNE-A-IADCTLALEK--DPNY--LKA 306 (470)
Q Consensus 241 ~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~la~~~~~~g~~~~-A-~~~~~~al~~--~p~~--~~~ 306 (470)
-.+..|+++.|+++..-+|+.+-..|+ ..+.-...-+......|..-+ . ...+...... -|+. .+.
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 456789999999999999976533221 112333334445555565211 1 1222222111 2333 445
Q ss_pred HHHHHHHHH---------HhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q psy16214 307 LSRRCKCFH---------ALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKR 352 (470)
Q Consensus 307 ~~~la~~~~---------~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~ 352 (470)
+...|..++ ..++...|+.++++|++++|...+...+.+++..++.
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhh
Confidence 666677673 4567889999999999999998888888888887764
No 460
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=0.39 Score=39.58 Aligned_cols=54 Identities=33% Similarity=0.453 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214 372 DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR 425 (470)
Q Consensus 372 ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~ 425 (470)
.++..|+.+...+|||+....+...+..+-..+..++.+|.+|.||-+|..|=-
T Consensus 19 ~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 19 ALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred HhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 455679999999999999988888888888999999999999999999999854
No 461
>KOG3807|consensus
Probab=90.22 E-value=14 Score=33.42 Aligned_cols=92 Identities=17% Similarity=0.049 Sum_probs=66.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------C------
Q psy16214 10 DGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLD--------------P------ 69 (470)
Q Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------p------ 69 (470)
.-....+..+..+-|+.-..+++++|..+.+|..++.-- ..-..+|...++++++.. +
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~ 267 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQL 267 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhh
Confidence 334556677888889999999999999999988887532 223455666666665531 1
Q ss_pred ---CCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy16214 70 ---RFS--KGLIRQIKCNIALGDAPTARSNLKALQELDP 103 (470)
Q Consensus 70 ---~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 103 (470)
.+. -+-.++|.|-.++|+..+|++.++.+.+-.|
T Consensus 268 rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 268 RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 122 2345789999999999999999999888666
No 462
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.69 E-value=4.9 Score=37.85 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcC---------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAISVC---------PNVAAYYGNRAACYMMLGMYTYALDDAKLAVS 66 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 66 (470)
+.-+.+++.-.|||..|++.++.+ +++ +-+...++..|-+|+.+++|.+|+..|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888899999999988764 222 22467889999999999999999999988764
No 463
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.44 E-value=1.9 Score=38.02 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214 40 YYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL 98 (470)
Q Consensus 40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 98 (470)
.+...+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--.|++.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455677778888888888888888888888888888888888888877777777764
No 464
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=89.38 E-value=14 Score=32.26 Aligned_cols=171 Identities=10% Similarity=0.057 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-hHHHHHHHHHH-hccCChHHHHHHHHHHHhhCCCh--HHHHHHHHHH-
Q psy16214 155 KLMKAECLAHLNRLQEAQEIANSILATDKQN-PDAVFVRGLCL-YYDDKMDLAVNHFQLLLKLAPDH--AKAKETYKRA- 229 (470)
Q Consensus 155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~- 229 (470)
+..+|.+..+.++|++.+.++++++..+|.- .+-...++.+| ...|....+...+.......... ......+...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 4568888899999999999999999886653 34445555555 22344445555554444332221 1111111000
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc-----C-----CHHHHHHHHHHHHHh
Q psy16214 230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM-----G-----KYNEAIADCTLALEK 299 (470)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~~~~al~~ 299 (470)
..+... + ..--.+.+...+..+--...++....-.+-..|..|.-+ | -.+.|...|++|+.+
T Consensus 84 ~kie~E-----L---~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 155 (236)
T PF00244_consen 84 KKIEDE-----L---IDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEI 155 (236)
T ss_dssp HHHHHH-----H---HHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----H---HHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHH
Confidence 000000 0 000123333333322222222211111122233333211 1 136678888888754
Q ss_pred -----CCCCHH---HHHHHHHHH-HHhCCHHHHHHHHHHHHhc
Q psy16214 300 -----DPNYLK---ALSRRCKCF-HALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 300 -----~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~a~~~ 333 (470)
.|.+|. ..++.+..| ..+|+.++|+...++++..
T Consensus 156 a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 156 AKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 566643 334445444 5689999999999988753
No 465
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.33 E-value=1.3 Score=34.90 Aligned_cols=51 Identities=22% Similarity=0.135 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA 88 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 88 (470)
.+.....+...+..|++.-|..++..++..+|++..+...++.++.++|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 455666677777777777777777777777777777777777777766643
No 466
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.02 E-value=15 Score=32.30 Aligned_cols=176 Identities=14% Similarity=0.062 Sum_probs=118.2
Q ss_pred HHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------cCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214 41 YGNRAACYMMLGMY-TYALDDAKLAVSLDPRFSKGLIRQIKCNIA--------LGDAPTARSNLKALQELDPDNPAIAQE 111 (470)
Q Consensus 41 ~~~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~ 111 (470)
...+..+.....++ ..|++.-...+..+|.....|...-.+... ..-.+.-+..+..+++-+|.+-.+|..
T Consensus 34 l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~H 113 (328)
T COG5536 34 LMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHH 113 (328)
T ss_pred HHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHH
Confidence 33444444444443 467777777787888777766655544443 122455667788889999999888876
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHhhcCCCC
Q psy16214 112 SKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL------AHLNRLQEAQEIANSILATDKQN 185 (470)
Q Consensus 112 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~------~~~~~~~~A~~~~~~~l~~~p~~ 185 (470)
...+. ..+...++..-+...+++++.++.+-..|..+-.+. .....+....++-..++..++.+
T Consensus 114 R~~~L----------e~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N 183 (328)
T COG5536 114 RQWML----------ELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYN 183 (328)
T ss_pred HHHHH----------HhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCC
Confidence 55542 234445677788888999999998887765544444 44445556677777888899999
Q ss_pred hHHHHHH---HHHHhccCC------hHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 186 PDAVFVR---GLCLYYDDK------MDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 186 ~~~~~~l---a~~~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
..+|..+ -......|+ +++-+.+....+-.+|++..+|..+
T Consensus 184 ~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 184 NSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence 9998877 333333454 4455666777777899999888765
No 467
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.95 E-value=9.7 Score=29.91 Aligned_cols=120 Identities=17% Similarity=0.147 Sum_probs=66.4
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214 161 CLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN 240 (470)
Q Consensus 161 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 240 (470)
.+...+.....+.+++.++..++.++..+..+..++... +..+.+..++. .++....-.. +.
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd~~~~-------------~~ 77 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYDIEKV-------------GK 77 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCCHHHH-------------HH
Confidence 344556778888888888887777777777777777654 34455555552 1111111111 44
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK-MGKYNEAIADCTLALEKDPNYLKALSRRCKCFH 315 (470)
Q Consensus 241 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 315 (470)
...+.+-+++++-++.+.- . +...-.++.. .++++.|++++.+ +.+++.|..++..+.
T Consensus 78 ~c~~~~l~~~~~~l~~k~~----~--------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDG----N--------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHcCcHHHHHHHHHhhc----C--------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 4555566666666665421 1 1111122222 2677777777765 345667776665554
No 468
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.85 E-value=1.9 Score=38.78 Aligned_cols=62 Identities=18% Similarity=0.051 Sum_probs=44.0
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 23 ALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 23 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
|+.+|.+|+.+.|.+...|+.+|.++...|+.-.|+-+|-+++-...-.+.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888877777776654456677777666665
No 469
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.23 E-value=2.2 Score=29.24 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAIS 32 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 32 (470)
..+..+...|..+=..|++.+|+.+|+++++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455667777777777777777777776654
No 470
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.32 E-value=34 Score=34.88 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=15.4
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 312 KCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 312 ~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.-+...|++++|++.+++. .+-|.
T Consensus 513 f~~~~~g~~~~AL~~i~~L-~liP~ 536 (613)
T PF04097_consen 513 FDLYHAGQYEQALDIIEKL-DLIPL 536 (613)
T ss_dssp HHHHHTT-HHHHHHHHHHT-T-S-S
T ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC
Confidence 3456789999999888854 46674
No 471
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.05 E-value=17 Score=30.51 Aligned_cols=77 Identities=9% Similarity=-0.008 Sum_probs=53.6
Q ss_pred HHcCCHHHHHHHHHHHhhcC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHH
Q psy16214 163 AHLNRLQEAQEIANSILATD-KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH----AKAKETYKRAKLLKAKKE 237 (470)
Q Consensus 163 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~ 237 (470)
...-.-++|...|-++-... -++++..+.+|..|. ..+.++++..+.+++++.+.+ +.+...+
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sL----------- 184 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSL----------- 184 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHH-----------
Confidence 33434456666666554322 256778888887766 678899999999999876543 5555555
Q ss_pred HHHHHHhcCCHHHHH
Q psy16214 238 EGNEKFVAGKNQEAF 252 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~ 252 (470)
+.++...++++.|-
T Consensus 185 -as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 -ASIYQKLKNYEQAY 198 (203)
T ss_pred -HHHHHHhcchhhhh
Confidence 88999999988874
No 472
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=86.84 E-value=20 Score=31.23 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHH-HcCChHHHHHHHHHHHh
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYM-MLGMYTYALDDAKLAVS 66 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~-~~g~~~~A~~~~~~al~ 66 (470)
+.+..+|..+-+.++|++.+.+..+++..+|.- ..-...++.+|- ..|....+...+.....
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 356778888888899999999999988887753 344455555552 24555555555544443
No 473
>KOG0276|consensus
Probab=86.81 E-value=8.4 Score=37.74 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=37.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214 46 ACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE 100 (470)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 100 (470)
.+.+++|+++.|.+...++ ++..-|..||.+.+..+++..|.+++.++..
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3445667777776655433 4667788999999999999999999998765
No 474
>KOG0686|consensus
Probab=86.50 E-value=12 Score=34.86 Aligned_cols=141 Identities=11% Similarity=0.012 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----c
Q psy16214 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI----D 262 (470)
Q Consensus 187 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~ 262 (470)
.++..+|.-|...|+.+.|++.|.++-........+.... .+.-.+....++|..-..+..+|... .
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~---------ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMC---------LNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHH---------HHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 3677788888889999999999888766554443332221 22245556677887777777777654 1
Q ss_pred ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH-H---HhCCHHHHHHHHHHH
Q psy16214 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK--------DPNYLKALSRRCKCF-H---ALGQYKECVIDAEKI 330 (470)
Q Consensus 263 p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~-~---~~g~~~~A~~~~~~a 330 (470)
.......+.+.+.-|.+.+.+++|..|..++-.+.-- .|.+..+|..+.-+- + .+..--..-..|+..
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~f 301 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLF 301 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhH
Confidence 1122223456777788888888999999888665432 344444443332211 0 111111233467777
Q ss_pred HhcCCC
Q psy16214 331 YKMDNS 336 (470)
Q Consensus 331 ~~~~p~ 336 (470)
+++.|.
T Consensus 302 lel~Pq 307 (466)
T KOG0686|consen 302 LELEPQ 307 (466)
T ss_pred HhcChH
Confidence 777775
No 475
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.10 E-value=1.9 Score=25.98 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 273 LHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
.+.+|.+|..+|+.+.|.+.+++++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 357899999999999999999999953
No 476
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.06 E-value=13 Score=32.65 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhcccC--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHH
Q psy16214 250 EAFDIYTEALKIDARN--ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY------LKALSRRCKCFHALGQYK 321 (470)
Q Consensus 250 ~A~~~~~~al~~~p~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 321 (470)
..++++++|+...... ......+...+|..|...|++++|+.+++.+....... ..++..+..|...+|+.+
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 3445555554332211 11234566788999999999999999999997654332 567778889999999998
Q ss_pred HHHHHHHHHH
Q psy16214 322 ECVIDAEKIY 331 (470)
Q Consensus 322 ~A~~~~~~a~ 331 (470)
..+...-+++
T Consensus 236 ~~l~~~leLl 245 (247)
T PF11817_consen 236 DYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHh
Confidence 8777665544
No 477
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.81 E-value=1.8 Score=23.52 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHhhcCCchhHHHHHHH
Q psy16214 18 KQYSKALKCYSEAISVCPNVAAYYGNRA 45 (470)
Q Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~~a 45 (470)
|+++.|...|++++...|.++..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3455566666666666665555555444
No 478
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=85.56 E-value=9.1 Score=32.97 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCC
Q psy16214 269 NSKLLHNRATVLF---------KMGKYNEAIADCTLALEKDPNY 303 (470)
Q Consensus 269 ~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~ 303 (470)
.+..+-..|..+. ..++...|+.++++|++++|+.
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 5677777888774 4567889999999999999885
No 479
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.51 E-value=3.7 Score=36.86 Aligned_cols=60 Identities=15% Similarity=-0.026 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214 57 ALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116 (470)
Q Consensus 57 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 116 (470)
|..+|.+|+.+.|.+...+..+|.++...|+.-.|+-+|-+++-.....+.+...+..+.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf 60 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF 60 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999976655566666666553
No 480
>KOG1463|consensus
Probab=85.32 E-value=29 Score=31.62 Aligned_cols=280 Identities=13% Similarity=0.061 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCch--------hHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISV--CPNV--------AAYYGNRAACYMMLGMYTYALDDAKLAVSL---DPR 70 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~ 70 (470)
+......+.......++++++..|...+.. .|.+ ......+|..|...|+..+-.......-.. -+.
T Consensus 4 ~~~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K 83 (411)
T KOG1463|consen 4 AASLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK 83 (411)
T ss_pred hHHHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh
Confidence 334567778888888899999999999874 2221 456778899999999887765555443221 111
Q ss_pred --CHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214 71 --FSKGLIRQIKCN-IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ 147 (470)
Q Consensus 71 --~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 147 (470)
..+....+.... ..-+..+.-+..+..+++-.... -.......-....+..++..++|.+|+.....++..
T Consensus 84 akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e------kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rE 157 (411)
T KOG1463|consen 84 AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE------KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRE 157 (411)
T ss_pred HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 011111111111 11122222233333332211100 001111111223445577888999999888777643
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-----CCC--hHHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214 148 ------GVASKTYKLMKAECLAHLNRLQEAQEIANSILATD-----KQN--PDAVFVRGLCLYYDDKMDLAVNHFQLLLK 214 (470)
Q Consensus 148 ------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 214 (470)
.+.-.++...-..+|....+..+|...+..+-... |.. ...-..-|.++....+|..|..+|-++++
T Consensus 158 lKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfE 237 (411)
T KOG1463|consen 158 LKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFE 237 (411)
T ss_pred HHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHc
Confidence 22334566667788888889888888777654321 111 12223346666677899999999999987
Q ss_pred hCC---ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHhhcccCccchHHHHHHHHHHHHH--cCCHH
Q psy16214 215 LAP---DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYT--EALKIDARNININSKLLHNRATVLFK--MGKYN 287 (470)
Q Consensus 215 ~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~~la~~~~~--~g~~~ 287 (470)
-.. ++..+...++.. -.+-...+..++--..+. .+++.... ...+....+.++.+ +.+|+
T Consensus 238 gf~s~~~~v~A~~sLKYM---------lLcKIMln~~ddv~~lls~K~~l~y~g~----~i~AmkavAeA~~nRSLkdF~ 304 (411)
T KOG1463|consen 238 GFDSLDDDVKALTSLKYM---------LLCKIMLNLPDDVAALLSAKLALKYAGR----DIDAMKAVAEAFGNRSLKDFE 304 (411)
T ss_pred cccccCCcHHHHHHHHHH---------HHHHHHhcCHHHHHHHHhhHHHHhccCc----chHHHHHHHHHhcCCcHHHHH
Confidence 331 222333222111 222333445554433333 33443332 23455566666543 45788
Q ss_pred HHHHHHHHHHHhCCC
Q psy16214 288 EAIADCTLALEKDPN 302 (470)
Q Consensus 288 ~A~~~~~~al~~~p~ 302 (470)
.|+..|..-+..+|-
T Consensus 305 ~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 305 KALADYKKELAEDPI 319 (411)
T ss_pred HHHHHhHHHHhcChH
Confidence 888888887776654
No 481
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=85.22 E-value=37 Score=32.67 Aligned_cols=167 Identities=16% Similarity=0.067 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CHHHHHHH
Q psy16214 75 LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAN--------------DYRTAMFY 140 (470)
Q Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~~~~A~~~ 140 (470)
...+|.....+++|+.|...|+.+.+-.. +..+|..++-+.+... +..+-.+ -++.|...
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~-~Dkaw~~~A~~~Em~a-----lsl~~~~~~~~~k~~~~~~~~~le~A~~~ 284 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFK-NDKAWKYLAGAQEMAA-----LSLLMQGQSISAKIRKDEIEPYLENAYYT 284 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHh-hchhHHHHHhHHHHHH-----HHHHhcCCCCccccccccHHHHHHHHHHH
Confidence 45688899999999999999988877443 3344544444433321 1222211 12233333
Q ss_pred HHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCC-----hHHHHHHHHHHhccCChHHHHHHH
Q psy16214 141 LDRAM----DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT--DKQN-----PDAVFVRGLCLYYDDKMDLAVNHF 209 (470)
Q Consensus 141 ~~~~l----~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~-----~~~~~~la~~~~~~g~~~~A~~~~ 209 (470)
|.+.- .............++++...+.+.+|...+-+.... ..+. .-.+-..|.++
T Consensus 285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~------------- 351 (414)
T PF12739_consen 285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY------------- 351 (414)
T ss_pred HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh-------------
Confidence 33311 111123345556677777888877777666655543 2111 12222333333
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214 210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR 264 (470)
Q Consensus 210 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 264 (470)
..+..+...+...... +...-..-.|..+...|+...|+.+|..++.....
T Consensus 352 -~~~~~~~~~~~~~r~R---K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 352 -ASLRSNRPSPGLTRFR---KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred -cccccCCCCccchhhH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 1111101000000000 00000111288899999999999999999876543
No 482
>KOG0889|consensus
Probab=85.13 E-value=1e+02 Score=37.71 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----CC----HHHHHHHHHHHHhcCCChhHH
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL----GQ----YKECVIDAEKIYKMDNSRENH 340 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~----~~~A~~~~~~a~~~~p~~~~~ 340 (470)
.+..+...|..+.++|+.++|-..|..|++++..-+++|..-|...... .. -..|+.+|-+|....-+...+
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaR 2890 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKAR 2890 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhH
Confidence 4677888999999999999999999999999999999999988766532 11 246788888888888777777
Q ss_pred HHHHHHHHHhh
Q psy16214 341 NFLEEAKRLLK 351 (470)
Q Consensus 341 ~~l~~~~~~~~ 351 (470)
..|.+..-.+.
T Consensus 2891 k~iakvLwLls 2901 (3550)
T KOG0889|consen 2891 KLIAKVLWLLS 2901 (3550)
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=84.75 E-value=35 Score=32.03 Aligned_cols=56 Identities=11% Similarity=-0.215 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCc-----hhHHHHHH--HHHHHHcCChHHHHHHHHH
Q psy16214 8 KEDGNTQYKLKQYSKALKCYSEAISVCPN-----VAAYYGNR--AACYMMLGMYTYALDDAKL 63 (470)
Q Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~--a~~~~~~g~~~~A~~~~~~ 63 (470)
...+..+++.++|..|...|.+++...++ ....+..+ |..++..-++++|.+.+++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34566889999999999999999877542 13334444 4445667889999999985
No 484
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.71 E-value=3 Score=22.60 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214 285 KYNEAIADCTLALEKDPNYLKALSRRCK 312 (470)
Q Consensus 285 ~~~~A~~~~~~al~~~p~~~~~~~~la~ 312 (470)
+.+.|...|++++...|.++..|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4555666666666666666666555443
No 485
>KOG1920|consensus
Probab=83.84 E-value=68 Score=34.64 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=11.7
Q ss_pred HHHHhcCCHHHHHHHHHH
Q psy16214 12 NTQYKLKQYSKALKCYSE 29 (470)
Q Consensus 12 ~~~~~~g~~~~A~~~~~~ 29 (470)
..++..++|.+|.+..++
T Consensus 685 r~~l~~~~y~~AF~~~Rk 702 (1265)
T KOG1920|consen 685 RTLLDRLRYKEAFEVMRK 702 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666777777776654
No 486
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.76 E-value=3.7 Score=32.32 Aligned_cols=52 Identities=21% Similarity=0.124 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy16214 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122 (470)
Q Consensus 71 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 122 (470)
-.......+...+..|++.-|.+....++..+|++..+....+.++...+.-
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3455566677777888899999999999999999998888888888776654
No 487
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.69 E-value=17 Score=32.08 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=47.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcccC--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16214 237 EEGNEKFVAGKNQEAFDIYTEALKIDARN--ININSKLLHNRATVLFKMGKYNEAIADCTLAL 297 (470)
Q Consensus 237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (470)
..|..|+..|++++|+.+|+.+......+ ..+...++..+..|...+|+.+..+..+-+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34999999999999999999996553322 22345778888999999999999888776654
No 488
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.76 E-value=30 Score=32.79 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214 74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ 147 (470)
Q Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 147 (470)
-....+...+..++|..|...+..+...-|.+.. + .....+..+......-++.+|...++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~-------~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREE-Y-------QRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-H-------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455677888999999999999999885333333 2 2233345555677788999999999988765
No 489
>KOG0686|consensus
Probab=82.28 E-value=44 Score=31.34 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C----CCHH
Q psy16214 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD----P----NYLK 305 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p----~~~~ 305 (470)
.+.+.|..|...|+++.|++.|.++-..+.+... ....+.++-.+-..+|+|..-..+-.+|.+.- . -.+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh-vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH-VINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH-HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3444599999999999999999997665544332 35778888888899999988888877776651 0 1134
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16214 306 ALSRRCKCFHALGQYKECVIDAEKIY 331 (470)
Q Consensus 306 ~~~~la~~~~~~g~~~~A~~~~~~a~ 331 (470)
+...-|.+.+.+++|..|..++-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55666777788889999998887654
No 490
>KOG2063|consensus
Probab=81.93 E-value=44 Score=35.18 Aligned_cols=175 Identities=13% Similarity=0.036 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcC----CCChHHHHHHHHHHhccCCh--HHHHHHHHHHHhhCCChHHHHHHH-H
Q psy16214 155 KLMKAECLAHLNRLQEAQEIANSILATD----KQNPDAVFVRGLCLYYDDKM--DLAVNHFQLLLKLAPDHAKAKETY-K 227 (470)
Q Consensus 155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~~-~ 227 (470)
+..++.+|...|++++|++.+.+..... +...+.+-..-..+-..+.. +-..++-.=.+..+|....-...- .
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5668889999999999999999988743 22233333333333334443 455555555555555432111000 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc--------CCHHHHHHH--HHHHH
Q psy16214 228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM--------GKYNEAIAD--CTLAL 297 (470)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~--~~~al 297 (470)
....-..-.+...-++......-++.+++.++....... ...+..++..|... ++-+++.+. .++..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~---~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~ 663 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTS---TLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLL 663 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccc---hHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHH
Confidence 000000001124456677788889999999887655432 22333333333321 122233333 22222
Q ss_pred Hh-------CCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 298 EK-------DPNY-------LKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 298 ~~-------~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
.. +|+. ...|..++.++.++|+.++|+..|-..+.
T Consensus 664 ~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 664 DFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 11 2221 56778889999999999999988877765
No 491
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=80.52 E-value=56 Score=31.41 Aligned_cols=96 Identities=14% Similarity=-0.030 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch------hHHHHHHHHHHHHcCCh-------HHHHHHHHHHHhc-----
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNV------AAYYGNRAACYMMLGMY-------TYALDDAKLAVSL----- 67 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~g~~-------~~A~~~~~~al~~----- 67 (470)
....+|+.++..++|+-|...|+.+.+-.-++ +.+.-..|.+++..+.. +....+++.++..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 46778999999999999999999987754322 33444455566655532 1333333333221
Q ss_pred ------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214 68 ------DPRFSKGLIRQIKCNIALGDAPTARSNLKALQEL 101 (470)
Q Consensus 68 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 101 (470)
......+....+.++...+.+.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1123456666777888888888877777666543
No 492
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=80.30 E-value=40 Score=29.54 Aligned_cols=169 Identities=9% Similarity=0.013 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc-CC--CChHHHHHHHHHHh-ccCChHHHHHHHHHHHhhC--CChHHHHHHHHHH
Q psy16214 156 LMKAECLAHLNRLQEAQEIANSILAT-DK--QNPDAVFVRGLCLY-YDDKMDLAVNHFQLLLKLA--PDHAKAKETYKRA 229 (470)
Q Consensus 156 ~~~a~~~~~~~~~~~A~~~~~~~l~~-~p--~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~ 229 (470)
..+|.+..+.++|++.+.+.++++.. +| -+.+-...+..+|- ..|....+...+...-... ..+.......
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~--- 81 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASI--- 81 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHH---
Confidence 45788888899999999999998886 43 45666677777763 3466677777766533221 1111100000
Q ss_pred HHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH-----cCC-----HHHHHHHHHHHHH
Q psy16214 230 KLLKAKKEEGNEKFV-AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK-----MGK-----YNEAIADCTLALE 298 (470)
Q Consensus 230 ~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~-----~g~-----~~~A~~~~~~al~ 298 (470)
..+.. .+--. ..--.+.+.+++..+--...++....-.+-..|..|.- .|+ .+.|...|+.|++
T Consensus 82 ---~~yr~--kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e 156 (244)
T smart00101 82 ---KEYRG--KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQD 156 (244)
T ss_pred ---HHHHH--HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 00000 00000 00112333333333222222221111111122333322 222 4578888888876
Q ss_pred h-----CCCCHH---HHHHHHHH-HHHhCCHHHHHHHHHHHHh
Q psy16214 299 K-----DPNYLK---ALSRRCKC-FHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 299 ~-----~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~a~~ 332 (470)
+ .|.+|- ..++.+.. |..+++.++|....++++.
T Consensus 157 ~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 157 IALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 466643 23333444 3457999999988888875
No 493
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.22 E-value=3 Score=28.74 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAIS 32 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 32 (470)
.+..+...|..+=..|+|++|+.+|..+++
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445566666777777777777777776654
No 494
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=80.03 E-value=30 Score=27.89 Aligned_cols=69 Identities=30% Similarity=0.240 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hccc---CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16214 230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALK-IDAR---NININSKLLHNRATVLFKMGKYNEAIADCTLALE 298 (470)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (470)
.........++..++.|+...|.+.++.+-. +.-. -|-.........+..+...|++.+|...+..++.
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3445555669999999999999999987531 1100 0111234566778899999999999999988874
No 495
>PF12854 PPR_1: PPR repeat
Probab=78.73 E-value=6.6 Score=21.99 Aligned_cols=26 Identities=12% Similarity=-0.068 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy16214 72 SKGLIRQIKCNIALGDAPTARSNLKA 97 (470)
Q Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (470)
...|..+...|.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44555556666666666666665543
No 496
>PF12854 PPR_1: PPR repeat
Probab=78.42 E-value=6 Score=22.17 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHH
Q psy16214 37 VAAYYGNRAACYMMLGMYTYALDDAKL 63 (470)
Q Consensus 37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~ 63 (470)
+...|..+-..+.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456677788888888888888887764
No 497
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=78.37 E-value=13 Score=28.10 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISV 33 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 33 (470)
+.+..+|+..++.+++-.++-.|++|+.+
T Consensus 2 e~htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 2 EKHTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 45778899999999999999999998865
No 498
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=78.33 E-value=7.8 Score=26.59 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=7.8
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q psy16214 277 ATVLFKMGKYNEAIADCTL 295 (470)
Q Consensus 277 a~~~~~~g~~~~A~~~~~~ 295 (470)
|.-+-..|++.+|+.+|++
T Consensus 13 AVe~D~~gr~~eAi~~Y~~ 31 (75)
T cd02682 13 AVKAEKEGNAEDAITNYKK 31 (75)
T ss_pred HHHHHhcCCHHHHHHHHHH
Confidence 3333344444444444433
No 499
>KOG1920|consensus
Probab=77.34 E-value=1.1e+02 Score=33.11 Aligned_cols=21 Identities=29% Similarity=0.127 Sum_probs=10.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEAL 259 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al 259 (470)
+..+..++++-+|-+.....+
T Consensus 1006 ~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1006 VSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHcccchhHHHHHHHHh
Confidence 444455555555555554443
No 500
>KOG0687|consensus
Probab=77.27 E-value=51 Score=29.95 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hH---HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH
Q psy16214 152 KTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PD---AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET 225 (470)
Q Consensus 152 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 225 (470)
.+++..+|..|.+.|+.+.|.+.+.+.....-.. .+ ....+|..|....=..+.++..+..++.-.+ |..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD----WeR 179 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD----WER 179 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC----hhh
Confidence 4688899999999999999999998876643221 22 3445566665544445555555555554444 222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy16214 226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA 263 (470)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 263 (470)
..+.+... |.......++.+|..+|-.++....
T Consensus 180 rNRlKvY~-----Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 180 RNRLKVYQ-----GLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred hhhHHHHH-----HHHHHHHHhHHHHHHHHHHHccccc
Confidence 23333333 7777778899999999988875543
Done!