Query psy16214
Match_columns 470
No_of_seqs 957 out of 3209
Neff 11.0
Searched_HMMs 29240
Date Fri Aug 16 23:44:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y4t_A DNAJ homolog subfamily 100.0 1.5E-54 5E-59 420.4 52.5 423 2-426 24-450 (450)
2 3ieg_A DNAJ homolog subfamily 100.0 1.4E-41 4.7E-46 318.6 48.2 353 3-355 2-358 (359)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-38 5E-43 301.9 45.3 319 9-343 4-345 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.4E-39 1.5E-43 305.6 40.4 328 3-346 32-382 (388)
5 2gw1_A Mitochondrial precursor 100.0 8.4E-35 2.9E-39 286.3 43.4 317 2-336 4-404 (514)
6 3fp2_A TPR repeat-containing p 100.0 2.8E-35 9.6E-40 291.5 37.9 321 3-336 24-494 (537)
7 3hym_B Cell division cycle pro 100.0 4E-34 1.4E-38 264.8 34.3 291 3-321 21-322 (330)
8 2xpi_A Anaphase-promoting comp 100.0 3.6E-33 1.2E-37 280.1 41.8 329 3-344 199-591 (597)
9 2y4t_A DNAJ homolog subfamily 100.0 3.2E-33 1.1E-37 270.4 38.4 310 3-336 59-413 (450)
10 2gw1_A Mitochondrial precursor 100.0 1.7E-33 5.9E-38 276.9 34.3 328 3-342 38-488 (514)
11 3hym_B Cell division cycle pro 100.0 3.9E-33 1.4E-37 258.1 34.4 296 27-346 11-313 (330)
12 3ieg_A DNAJ homolog subfamily 100.0 4.6E-32 1.6E-36 253.8 38.4 294 2-319 35-355 (359)
13 1fch_A Peroxisomal targeting s 100.0 9.4E-34 3.2E-38 266.6 26.9 293 12-333 33-359 (368)
14 2xpi_A Anaphase-promoting comp 100.0 7.3E-32 2.5E-36 270.5 38.7 309 5-333 118-504 (597)
15 4g1t_A Interferon-induced prot 100.0 1.1E-31 3.8E-36 261.4 38.6 372 4-428 51-458 (472)
16 3fp2_A TPR repeat-containing p 100.0 1E-31 3.4E-36 266.0 34.4 299 21-336 4-410 (537)
17 4g1t_A Interferon-induced prot 100.0 5.7E-32 1.9E-36 263.4 28.3 318 4-342 94-469 (472)
18 4eqf_A PEX5-related protein; a 100.0 7E-32 2.4E-36 253.7 25.0 280 25-332 48-355 (365)
19 4eqf_A PEX5-related protein; a 100.0 1.1E-31 3.9E-36 252.3 25.6 281 4-298 65-355 (365)
20 1fch_A Peroxisomal targeting s 100.0 4E-31 1.4E-35 248.7 28.6 284 4-299 64-359 (368)
21 2h6f_A Protein farnesyltransfe 100.0 7.4E-31 2.5E-35 245.2 26.2 259 30-317 89-366 (382)
22 3cv0_A Peroxisome targeting si 100.0 7.4E-31 2.5E-35 242.4 25.9 287 3-301 20-317 (327)
23 3cv0_A Peroxisome targeting si 100.0 1E-30 3.4E-35 241.5 25.6 271 37-335 20-317 (327)
24 2h6f_A Protein farnesyltransfe 100.0 8E-30 2.7E-34 238.3 28.4 252 3-283 96-366 (382)
25 3u4t_A TPR repeat-containing p 100.0 3.7E-28 1.3E-32 218.3 27.8 257 3-318 2-269 (272)
26 3uq3_A Heat shock protein STI1 100.0 6.4E-28 2.2E-32 214.7 26.5 228 2-262 3-237 (258)
27 3u4t_A TPR repeat-containing p 100.0 7.8E-28 2.7E-32 216.2 25.3 217 3-282 36-267 (272)
28 3mkr_A Coatomer subunit epsilo 100.0 4.9E-27 1.7E-31 212.4 30.4 258 12-337 7-268 (291)
29 2pl2_A Hypothetical conserved 100.0 8.5E-28 2.9E-32 208.1 24.0 199 2-213 3-212 (217)
30 3mkr_A Coatomer subunit epsilo 100.0 6.3E-27 2.1E-31 211.7 30.6 236 46-351 7-248 (291)
31 3sf4_A G-protein-signaling mod 100.0 1E-28 3.5E-33 235.2 19.6 303 2-322 7-365 (406)
32 3uq3_A Heat shock protein STI1 100.0 2.2E-27 7.6E-32 211.2 25.5 246 36-345 3-255 (258)
33 2pl2_A Hypothetical conserved 100.0 2E-27 6.9E-32 205.7 23.3 211 35-259 2-212 (217)
34 2ooe_A Cleavage stimulation fa 100.0 1.2E-24 4.2E-29 214.6 39.6 315 3-336 12-457 (530)
35 4a1s_A PINS, partner of inscut 100.0 4.9E-27 1.7E-31 224.2 21.7 287 4-336 48-375 (411)
36 3ro2_A PINS homolog, G-protein 100.0 5.3E-27 1.8E-31 217.1 20.4 288 3-336 4-335 (338)
37 3sf4_A G-protein-signaling mod 99.9 1.8E-26 6.3E-31 219.6 23.4 289 36-336 7-339 (406)
38 1xnf_A Lipoprotein NLPI; TPR, 99.9 4.6E-26 1.6E-30 204.8 23.9 252 13-327 14-269 (275)
39 2xm6_A Protein corresponding t 99.9 1.1E-22 3.9E-27 198.5 48.5 303 3-346 38-372 (490)
40 2xm6_A Protein corresponding t 99.9 1.2E-23 4E-28 205.5 40.9 302 3-336 74-435 (490)
41 2q7f_A YRRB protein; TPR, prot 99.9 1.5E-25 5.1E-30 197.6 22.5 212 3-226 22-233 (243)
42 2pzi_A Probable serine/threoni 99.9 6.4E-26 2.2E-30 229.3 20.9 255 129-413 402-675 (681)
43 2ho1_A Type 4 fimbrial biogene 99.9 7.7E-24 2.6E-28 187.8 28.0 211 4-226 37-249 (252)
44 3vtx_A MAMA; tetratricopeptide 99.9 2.8E-24 9.6E-29 181.0 23.5 171 150-336 3-173 (184)
45 3vtx_A MAMA; tetratricopeptide 99.9 2.6E-24 8.8E-29 181.2 23.2 172 3-220 4-175 (184)
46 2q7f_A YRRB protein; TPR, prot 99.9 2.4E-24 8.3E-29 189.8 22.5 220 37-318 22-241 (243)
47 2vq2_A PILW, putative fimbrial 99.9 2.3E-23 7.7E-28 181.1 28.1 213 2-226 6-222 (225)
48 2ond_A Cleavage stimulation fa 99.9 9.8E-24 3.4E-28 193.0 26.8 252 21-312 33-305 (308)
49 1ouv_A Conserved hypothetical 99.9 9.7E-23 3.3E-27 183.1 30.9 229 34-336 2-254 (273)
50 1ouv_A Conserved hypothetical 99.9 1.2E-22 4.2E-27 182.4 31.3 209 68-349 2-230 (273)
51 2ooe_A Cleavage stimulation fa 99.9 7.9E-22 2.7E-26 194.5 39.5 296 27-340 2-428 (530)
52 4abn_A Tetratricopeptide repea 99.9 4E-24 1.4E-28 207.1 22.3 214 19-257 83-317 (474)
53 2ho1_A Type 4 fimbrial biogene 99.9 5.8E-23 2E-27 182.1 27.3 207 38-306 37-245 (252)
54 4i17_A Hypothetical protein; T 99.9 5.3E-23 1.8E-27 179.6 26.3 173 3-219 6-181 (228)
55 2vq2_A PILW, putative fimbrial 99.9 1E-22 3.5E-27 176.9 28.0 216 33-310 3-222 (225)
56 4abn_A Tetratricopeptide repea 99.9 1.6E-23 5.6E-28 202.8 24.0 215 87-330 83-318 (474)
57 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.3E-23 1.1E-27 186.1 22.1 224 3-255 42-269 (275)
58 2ond_A Cleavage stimulation fa 99.9 3.9E-22 1.4E-26 182.3 29.4 227 55-336 33-273 (308)
59 3ulq_A Response regulator aspa 99.9 3.3E-23 1.1E-27 195.8 22.5 312 4-336 12-371 (383)
60 3e4b_A ALGK; tetratricopeptide 99.9 1.6E-22 5.5E-27 194.7 27.5 301 8-344 7-361 (452)
61 4i17_A Hypothetical protein; T 99.9 8.9E-23 3E-27 178.1 22.1 186 150-347 5-224 (228)
62 3e4b_A ALGK; tetratricopeptide 99.9 1.4E-22 4.7E-27 195.1 22.1 307 4-343 35-396 (452)
63 4gyw_A UDP-N-acetylglucosamine 99.9 5.3E-23 1.8E-27 206.7 19.8 174 147-336 4-177 (723)
64 4gyw_A UDP-N-acetylglucosamine 99.9 1.1E-22 3.6E-27 204.6 21.8 175 33-219 4-178 (723)
65 4a1s_A PINS, partner of inscut 99.9 1.7E-22 5.9E-27 192.7 22.0 255 36-336 46-335 (411)
66 3qky_A Outer membrane assembly 99.9 3.1E-22 1.1E-26 178.5 22.2 196 2-226 13-235 (261)
67 3ulq_A Response regulator aspa 99.9 2.6E-22 8.8E-27 189.7 19.7 243 7-301 106-370 (383)
68 3ro2_A PINS homolog, G-protein 99.9 3.2E-22 1.1E-26 184.8 19.8 253 38-336 5-295 (338)
69 3nf1_A KLC 1, kinesin light ch 99.9 1.3E-22 4.3E-27 185.6 16.6 253 33-336 22-310 (311)
70 3qky_A Outer membrane assembly 99.9 1.4E-21 4.9E-26 174.2 22.8 219 31-322 8-250 (261)
71 3dra_A Protein farnesyltransfe 99.9 1.4E-20 4.7E-25 168.9 27.8 238 55-313 50-302 (306)
72 3dra_A Protein farnesyltransfe 99.9 2.3E-20 7.9E-25 167.4 27.8 241 8-278 36-301 (306)
73 3nf1_A KLC 1, kinesin light ch 99.9 2.5E-22 8.6E-27 183.7 15.0 241 3-264 26-310 (311)
74 1hz4_A MALT regulatory protein 99.9 2.6E-20 9E-25 175.2 29.0 201 128-335 103-324 (373)
75 1qqe_A Vesicular transport pro 99.9 2E-21 7E-26 176.0 17.7 262 22-350 3-284 (292)
76 1hz4_A MALT regulatory protein 99.9 1.6E-19 5.4E-24 169.9 30.3 307 4-338 14-354 (373)
77 3q15_A PSP28, response regulat 99.9 7.5E-21 2.6E-25 179.2 20.7 237 6-299 103-365 (378)
78 3urz_A Uncharacterized protein 99.9 1.4E-20 4.8E-25 161.4 20.4 172 2-184 2-189 (208)
79 3urz_A Uncharacterized protein 99.9 7E-21 2.4E-25 163.3 18.3 179 151-346 3-199 (208)
80 2yhc_A BAMD, UPF0169 lipoprote 99.9 4.5E-20 1.5E-24 160.5 23.4 190 2-220 2-218 (225)
81 1qqe_A Vesicular transport pro 99.9 1.3E-20 4.4E-25 170.8 20.6 219 19-264 32-272 (292)
82 2pzi_A Probable serine/threoni 99.9 3.6E-20 1.2E-24 187.3 23.9 188 66-285 388-583 (681)
83 3q15_A PSP28, response regulat 99.9 1.6E-19 5.5E-24 170.1 25.7 308 7-334 15-366 (378)
84 3as5_A MAMA; tetratricopeptide 99.9 6.6E-20 2.3E-24 153.8 20.1 170 152-337 8-177 (186)
85 3as5_A MAMA; tetratricopeptide 99.9 9.1E-20 3.1E-24 153.0 20.8 171 4-220 8-178 (186)
86 4ga2_A E3 SUMO-protein ligase 99.9 5E-21 1.7E-25 154.8 12.2 145 10-166 3-148 (150)
87 3dss_A Geranylgeranyl transfer 99.8 3.6E-18 1.2E-22 153.9 30.8 195 13-219 38-271 (331)
88 4ga2_A E3 SUMO-protein ligase 99.8 7.8E-21 2.7E-25 153.7 10.1 146 158-319 3-149 (150)
89 4gco_A Protein STI-1; structur 99.8 1.7E-19 5.7E-24 141.0 15.9 113 3-115 12-124 (126)
90 1xi4_A Clathrin heavy chain; a 99.8 1.8E-17 6.2E-22 170.1 33.8 308 9-385 1054-1366(1630)
91 3edt_B KLC 2, kinesin light ch 99.8 1.5E-19 5.1E-24 162.6 16.4 224 15-262 12-282 (283)
92 3dss_A Geranylgeranyl transfer 99.8 1.7E-17 5.7E-22 149.5 29.5 239 48-336 39-307 (331)
93 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.5E-18 5.1E-23 150.8 21.3 187 122-336 8-216 (225)
94 3edt_B KLC 2, kinesin light ch 99.8 7E-19 2.4E-23 158.2 17.1 190 129-334 12-282 (283)
95 2r5s_A Uncharacterized protein 99.8 5.3E-19 1.8E-23 147.3 14.7 169 34-214 2-172 (176)
96 1xi4_A Clathrin heavy chain; a 99.8 4.3E-17 1.5E-21 167.3 31.0 269 16-328 1088-1379(1630)
97 3q7a_A Farnesyltransferase alp 99.8 3.2E-17 1.1E-21 148.3 26.8 187 12-202 62-258 (349)
98 3q7a_A Farnesyltransferase alp 99.8 2.1E-17 7.1E-22 149.5 25.3 253 37-312 53-345 (349)
99 1b89_A Protein (clathrin heavy 99.8 5.1E-20 1.7E-24 170.1 7.7 270 4-330 32-308 (449)
100 2r5s_A Uncharacterized protein 99.8 4E-19 1.4E-23 148.0 12.3 167 149-332 3-172 (176)
101 3qou_A Protein YBBN; thioredox 99.8 3.9E-18 1.3E-22 153.9 18.1 169 148-332 113-283 (287)
102 4gco_A Protein STI-1; structur 99.8 2.1E-18 7.1E-23 134.7 13.8 103 239-345 20-123 (126)
103 3gyz_A Chaperone protein IPGC; 99.8 8.2E-19 2.8E-23 141.0 10.9 121 207-343 23-143 (151)
104 3qou_A Protein YBBN; thioredox 99.8 1.3E-17 4.4E-22 150.4 19.7 169 34-214 113-283 (287)
105 2ifu_A Gamma-SNAP; membrane fu 99.8 5.5E-18 1.9E-22 154.6 17.2 217 15-303 2-227 (307)
106 2ifu_A Gamma-SNAP; membrane fu 99.8 1.6E-17 5.5E-22 151.5 18.9 208 85-336 4-226 (307)
107 2vsy_A XCC0866; transferase, g 99.8 1.3E-17 4.4E-22 165.8 19.6 165 17-193 2-169 (568)
108 4f3v_A ESX-1 secretion system 99.8 8.5E-18 2.9E-22 147.0 14.4 206 122-343 11-247 (282)
109 1b89_A Protein (clathrin heavy 99.8 5.2E-19 1.8E-23 163.4 7.0 261 13-335 12-274 (449)
110 4f3v_A ESX-1 secretion system 99.8 3.1E-18 1.1E-22 149.8 11.5 208 4-226 7-247 (282)
111 4e6h_A MRNA 3'-END-processing 99.8 4.7E-14 1.6E-18 140.3 42.3 319 3-336 65-536 (679)
112 2c2l_A CHIP, carboxy terminus 99.8 1.8E-17 6E-22 149.0 15.8 197 2-215 2-199 (281)
113 3gyz_A Chaperone protein IPGC; 99.7 6.8E-18 2.3E-22 135.6 10.7 119 170-304 20-138 (151)
114 2vsy_A XCC0866; transferase, g 99.7 3.8E-17 1.3E-21 162.4 18.4 164 132-311 3-169 (568)
115 3rjv_A Putative SEL1 repeat pr 99.7 6.3E-16 2.2E-20 132.7 22.4 185 136-343 4-206 (212)
116 2vgx_A Chaperone SYCD; alterna 99.7 3.7E-17 1.3E-21 131.6 12.9 130 206-351 7-137 (148)
117 3upv_A Heat shock protein STI1 99.7 1.3E-16 4.5E-21 124.7 14.8 114 2-115 2-121 (126)
118 1p5q_A FKBP52, FK506-binding p 99.7 9.7E-19 3.3E-23 161.4 2.1 183 133-333 80-294 (336)
119 1p5q_A FKBP52, FK506-binding p 99.7 8.4E-19 2.9E-23 161.8 1.0 196 17-214 78-293 (336)
120 2hr2_A Hypothetical protein; a 99.7 4.6E-17 1.6E-21 128.9 10.4 113 3-115 10-145 (159)
121 1bq0_A DNAJ, HSP40; chaperone, 99.7 5.3E-18 1.8E-22 125.3 4.7 69 356-429 3-71 (103)
122 3mv2_B Coatomer subunit epsilo 99.7 2.5E-15 8.5E-20 133.2 22.0 251 47-343 22-292 (310)
123 4gcn_A Protein STI-1; structur 99.7 2.6E-16 8.9E-21 123.0 13.6 106 3-109 7-119 (127)
124 2c2l_A CHIP, carboxy terminus 99.7 1.4E-16 4.8E-21 143.1 13.7 198 35-261 1-199 (281)
125 2o37_A Protein SIS1; HSP40, J- 99.7 6.1E-18 2.1E-22 121.9 3.8 67 354-428 6-72 (92)
126 2vgx_A Chaperone SYCD; alterna 99.7 1.1E-16 3.7E-21 128.8 11.3 116 25-152 8-123 (148)
127 2xcb_A PCRH, regulatory protei 99.7 5.4E-16 1.9E-20 123.9 15.3 116 3-118 17-132 (142)
128 1dce_A Protein (RAB geranylger 99.7 1.5E-16 5E-21 156.2 13.7 195 13-219 37-271 (567)
129 2xcb_A PCRH, regulatory protei 99.7 2.5E-16 8.4E-21 126.0 12.2 129 207-351 5-134 (142)
130 3rkv_A Putative peptidylprolyl 99.7 5E-16 1.7E-20 127.3 14.3 116 3-118 10-144 (162)
131 4gcn_A Protein STI-1; structur 99.7 1E-15 3.6E-20 119.5 15.3 109 234-346 10-125 (127)
132 3rjv_A Putative SEL1 repeat pr 99.7 2E-15 7E-20 129.5 18.4 177 21-217 3-199 (212)
133 2qfc_A PLCR protein; TPR, HTH, 99.7 2.6E-15 8.8E-20 135.9 20.1 178 152-335 75-268 (293)
134 2fo7_A Synthetic consensus TPR 99.7 3.4E-15 1.1E-19 117.7 18.3 134 5-150 2-135 (136)
135 2fo7_A Synthetic consensus TPR 99.7 2.7E-15 9.3E-20 118.2 17.8 134 187-336 2-135 (136)
136 1dce_A Protein (RAB geranylger 99.7 1.7E-16 6E-21 155.7 13.0 189 132-336 43-270 (567)
137 3mv2_B Coatomer subunit epsilo 99.7 1.2E-14 4.1E-19 128.8 23.2 259 4-307 14-290 (310)
138 3sz7_A HSC70 cochaperone (SGT) 99.7 1.4E-15 4.6E-20 125.0 16.0 113 2-114 9-121 (164)
139 2hr2_A Hypothetical protein; a 99.7 3.9E-16 1.3E-20 123.5 11.8 118 230-347 9-146 (159)
140 1hh8_A P67PHOX, NCF-2, neutrop 99.7 8E-15 2.7E-19 125.9 18.7 162 3-197 5-166 (213)
141 3u3w_A Transcriptional activat 99.6 1.4E-14 4.8E-19 131.1 20.8 173 156-334 79-267 (293)
142 3upv_A Heat shock protein STI1 99.6 5.5E-15 1.9E-19 115.4 15.6 110 235-348 7-123 (126)
143 1hxi_A PEX5, peroxisome target 99.6 1.4E-15 4.6E-20 117.7 11.6 103 5-107 18-120 (121)
144 2dmx_A DNAJ homolog subfamily 99.6 1.9E-16 6.6E-21 114.4 6.0 71 354-428 7-77 (92)
145 3rkv_A Putative peptidylprolyl 99.6 5.9E-15 2E-19 120.8 15.7 118 231-352 10-147 (162)
146 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2.4E-14 8.1E-19 122.9 20.0 145 155-336 9-153 (213)
147 2e2e_A Formate-dependent nitri 99.6 5.3E-15 1.8E-19 123.1 15.3 126 196-337 20-148 (177)
148 1a17_A Serine/threonine protei 99.6 1.6E-14 5.5E-19 118.5 17.9 134 3-146 12-145 (166)
149 3lz8_A Putative chaperone DNAJ 99.6 2E-17 6.7E-22 148.1 0.0 68 354-427 26-93 (329)
150 3q49_B STIP1 homology and U bo 99.6 8.6E-15 2.9E-19 116.0 15.4 115 2-116 7-126 (137)
151 2fbn_A 70 kDa peptidylprolyl i 99.6 5.6E-16 1.9E-20 131.6 8.9 172 156-331 8-184 (198)
152 1elw_A TPR1-domain of HOP; HOP 99.6 1.5E-14 5.3E-19 111.0 16.3 114 2-115 2-115 (118)
153 1hdj_A Human HSP40, HDJ-1; mol 99.6 4.9E-16 1.7E-20 108.2 6.3 67 356-428 3-69 (77)
154 2lni_A Stress-induced-phosphop 99.6 8.1E-15 2.8E-19 115.3 14.2 117 2-118 14-130 (133)
155 2e2e_A Formate-dependent nitri 99.6 3.1E-15 1E-19 124.5 12.3 129 12-152 18-149 (177)
156 2ctr_A DNAJ homolog subfamily 99.6 3.9E-16 1.3E-20 111.5 5.7 68 354-427 5-72 (88)
157 1wjz_A 1700030A21RIK protein; 99.6 3.5E-16 1.2E-20 113.8 5.4 75 354-428 14-89 (94)
158 1a17_A Serine/threonine protei 99.6 2.5E-14 8.6E-19 117.3 17.4 133 186-334 13-147 (166)
159 2ctp_A DNAJ homolog subfamily 99.6 8E-16 2.7E-20 107.4 6.9 69 354-428 5-73 (78)
160 4e6h_A MRNA 3'-END-processing 99.6 1.4E-11 4.9E-16 122.5 40.1 305 19-336 47-502 (679)
161 2och_A Hypothetical protein DN 99.6 5.3E-16 1.8E-20 106.7 5.9 67 354-428 6-72 (73)
162 2dn9_A DNAJ homolog subfamily 99.6 5.4E-16 1.9E-20 108.7 5.8 70 354-428 5-74 (79)
163 2yua_A Williams-beuren syndrom 99.6 4.2E-16 1.4E-20 114.0 5.2 70 354-428 15-84 (99)
164 2qfc_A PLCR protein; TPR, HTH, 99.6 1.9E-13 6.4E-18 123.7 23.8 170 122-299 79-266 (293)
165 2fbn_A 70 kDa peptidylprolyl i 99.6 1.8E-14 6.3E-19 122.2 16.1 124 3-126 37-176 (198)
166 2ej7_A HCG3 gene; HCG3 protein 99.6 1.4E-15 4.7E-20 107.5 7.2 71 354-428 7-77 (82)
167 2vyi_A SGTA protein; chaperone 99.6 2.4E-14 8.3E-19 112.1 15.1 117 3-119 11-127 (131)
168 2xev_A YBGF; tetratricopeptide 99.6 1.9E-14 6.7E-19 112.6 14.2 112 4-115 2-119 (129)
169 3gw4_A Uncharacterized protein 99.6 3.3E-14 1.1E-18 120.9 16.7 162 163-336 3-179 (203)
170 2lni_A Stress-induced-phosphop 99.6 2.8E-14 9.6E-19 112.2 14.8 121 183-319 13-133 (133)
171 3sz7_A HSC70 cochaperone (SGT) 99.6 3E-14 1E-18 116.8 15.3 95 238-336 17-111 (164)
172 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.9E-14 6.6E-19 138.3 16.2 127 3-129 267-408 (457)
173 2dba_A Smooth muscle cell asso 99.6 5.6E-14 1.9E-18 112.7 16.1 114 2-115 26-142 (148)
174 2cug_A Mkiaa0962 protein; DNAJ 99.6 1.3E-15 4.5E-20 108.8 5.3 69 354-428 15-83 (88)
175 3u3w_A Transcriptional activat 99.6 1.1E-13 3.7E-18 125.2 19.2 169 123-299 80-266 (293)
176 2vyi_A SGTA protein; chaperone 99.6 2.7E-14 9.1E-19 111.8 13.3 122 183-320 9-130 (131)
177 2lgw_A DNAJ homolog subfamily 99.6 9.7E-16 3.3E-20 111.4 4.4 68 356-427 2-69 (99)
178 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 2E-15 7E-20 145.2 7.0 157 165-325 247-406 (457)
179 1na0_A Designed protein CTPR3; 99.6 1.3E-13 4.3E-18 106.9 15.9 114 4-117 9-122 (125)
180 4b4t_Q 26S proteasome regulato 99.6 1.8E-13 6E-18 131.2 20.1 233 3-263 3-247 (434)
181 3bvo_A CO-chaperone protein HS 99.6 7.5E-15 2.6E-19 121.9 8.7 85 355-440 42-131 (207)
182 2if4_A ATFKBP42; FKBP-like, al 99.6 8.7E-15 3E-19 134.9 10.0 139 3-152 178-333 (338)
183 1ihg_A Cyclophilin 40; ppiase 99.6 9E-14 3.1E-18 129.5 16.7 125 3-127 222-362 (370)
184 2ctw_A DNAJ homolog subfamily 99.6 6.5E-15 2.2E-19 109.5 6.8 70 354-428 15-84 (109)
185 2ctq_A DNAJ homolog subfamily 99.5 3.1E-15 1.1E-19 112.0 5.0 69 354-427 18-86 (112)
186 1hxi_A PEX5, peroxisome target 99.5 7E-14 2.4E-18 108.0 12.7 95 238-336 23-117 (121)
187 2uy1_A Cleavage stimulation fa 99.5 3.6E-11 1.2E-15 116.2 34.5 320 3-330 13-380 (493)
188 3hho_A CO-chaperone protein HS 99.5 1.1E-14 3.9E-19 117.8 8.2 71 355-425 3-75 (174)
189 1na0_A Designed protein CTPR3; 99.5 4.1E-13 1.4E-17 104.0 16.8 117 186-318 9-125 (125)
190 1elr_A TPR2A-domain of HOP; HO 99.5 1.6E-13 5.3E-18 107.4 14.3 116 2-118 2-124 (131)
191 2qsa_A DNAJ homolog DNJ-2; J-d 99.5 6.5E-15 2.2E-19 110.0 5.5 72 354-427 13-85 (109)
192 2l6l_A DNAJ homolog subfamily 99.5 1.4E-14 4.9E-19 115.8 7.5 75 353-427 7-82 (155)
193 1fpo_A HSC20, chaperone protei 99.5 1.3E-14 4.5E-19 117.0 7.3 70 357-426 2-73 (171)
194 3q49_B STIP1 homology and U bo 99.5 1.5E-13 5.1E-18 108.8 13.5 106 239-348 16-127 (137)
195 1zu2_A Mitochondrial import re 99.5 3E-14 1E-18 112.5 8.7 97 15-111 13-130 (158)
196 3gw4_A Uncharacterized protein 99.5 4E-13 1.4E-17 114.1 16.2 160 129-300 3-177 (203)
197 2kck_A TPR repeat; tetratricop 99.5 1.3E-13 4.3E-18 104.7 11.6 104 3-106 5-111 (112)
198 1gh6_A Large T antigen; tumor 99.5 5.1E-15 1.8E-19 109.8 3.6 65 355-428 7-73 (114)
199 1elw_A TPR1-domain of HOP; HOP 99.5 8.2E-13 2.8E-17 101.1 15.1 94 239-336 11-104 (118)
200 1faf_A Large T antigen; J doma 99.5 1.4E-14 4.8E-19 100.4 4.3 65 354-427 9-75 (79)
201 3apq_A DNAJ homolog subfamily 99.5 2.9E-14 9.8E-19 121.8 7.1 68 356-428 2-69 (210)
202 3k9i_A BH0479 protein; putativ 99.5 6.2E-14 2.1E-18 107.7 8.2 94 16-109 2-98 (117)
203 1elr_A TPR2A-domain of HOP; HO 99.5 6.5E-13 2.2E-17 103.8 14.3 114 236-353 8-128 (131)
204 2dba_A Smooth muscle cell asso 99.5 8.1E-13 2.8E-17 105.9 15.2 116 182-313 24-142 (148)
205 2qwo_B Putative tyrosine-prote 99.5 6.1E-15 2.1E-19 103.9 1.5 76 337-416 16-91 (92)
206 1wao_1 Serine/threonine protei 99.5 1.4E-14 4.7E-19 139.9 4.4 135 186-336 6-153 (477)
207 2ys8_A RAB-related GTP-binding 99.5 3.4E-14 1.2E-18 101.6 5.0 63 354-422 25-87 (90)
208 1wao_1 Serine/threonine protei 99.5 5.1E-14 1.8E-18 135.9 7.8 130 3-142 5-134 (477)
209 2xev_A YBGF; tetratricopeptide 99.5 2.2E-12 7.5E-17 100.8 15.2 97 239-336 9-108 (129)
210 4b4t_Q 26S proteasome regulato 99.5 5.4E-12 1.9E-16 120.8 21.0 203 121-335 7-247 (434)
211 2kck_A TPR repeat; tetratricop 99.5 7E-13 2.4E-17 100.5 11.5 105 216-336 2-109 (112)
212 2if4_A ATFKBP42; FKBP-like, al 99.4 2.1E-13 7E-18 125.7 9.9 147 186-336 179-331 (338)
213 1zu2_A Mitochondrial import re 99.4 6.1E-13 2.1E-17 105.0 9.2 90 244-337 14-124 (158)
214 1ihg_A Cyclophilin 40; ppiase 99.4 2.3E-12 7.7E-17 120.0 14.7 129 187-349 224-353 (370)
215 3k9i_A BH0479 protein; putativ 99.4 9.5E-13 3.3E-17 101.0 10.2 91 244-338 2-95 (117)
216 2pf4_E Small T antigen; PP2A, 99.4 1.2E-14 4E-19 115.5 -0.8 67 353-428 8-76 (174)
217 3ag7_A Putative uncharacterize 99.4 6.9E-14 2.4E-18 102.4 3.1 78 338-418 25-104 (106)
218 3ro3_A PINS homolog, G-protein 99.4 2.9E-12 9.9E-17 104.2 13.0 144 186-335 9-160 (164)
219 2l6j_A TPR repeat-containing p 99.4 2.6E-13 9.1E-18 102.9 6.1 97 2-98 2-104 (111)
220 1n4c_A Auxilin; four helix bun 99.4 1.6E-13 5.4E-18 109.8 4.7 66 356-423 117-182 (182)
221 1iur_A KIAA0730 protein; DNAJ 99.4 1.4E-13 4.7E-18 97.0 3.6 62 355-420 15-76 (88)
222 3ro3_A PINS homolog, G-protein 99.4 6.5E-12 2.2E-16 102.1 12.4 144 153-302 10-161 (164)
223 2kat_A Uncharacterized protein 99.3 2.1E-11 7.1E-16 93.1 11.8 85 21-105 2-86 (115)
224 2guz_A Mitochondrial import in 99.3 1.6E-12 5.6E-17 88.1 3.5 57 355-420 13-70 (71)
225 1na3_A Designed protein CTPR2; 99.3 5.2E-11 1.8E-15 86.4 11.4 82 4-85 9-90 (91)
226 2kat_A Uncharacterized protein 99.2 7.3E-11 2.5E-15 90.0 11.3 83 250-336 3-85 (115)
227 2uy1_A Cleavage stimulation fa 99.2 3.6E-08 1.2E-12 95.2 32.8 293 4-332 47-412 (493)
228 3uo3_A J-type CO-chaperone JAC 99.2 2.2E-12 7.5E-17 104.6 2.5 67 351-425 6-79 (181)
229 2kc7_A BFR218_protein; tetratr 99.2 2.2E-11 7.5E-16 90.1 6.9 92 7-106 3-95 (99)
230 1na3_A Designed protein CTPR2; 99.2 3.1E-10 1.1E-14 82.2 11.3 83 35-117 6-88 (91)
231 3ma5_A Tetratricopeptide repea 99.1 4.1E-10 1.4E-14 83.3 10.4 73 33-105 2-74 (100)
232 3ma5_A Tetratricopeptide repea 99.1 2.3E-10 7.8E-15 84.7 8.9 68 269-336 6-73 (100)
233 2l6j_A TPR repeat-containing p 99.1 8E-10 2.7E-14 83.3 12.2 83 37-119 3-91 (111)
234 3apo_A DNAJ homolog subfamily 99.0 1.4E-11 4.9E-16 126.6 -0.9 70 354-428 19-88 (780)
235 3n71_A Histone lysine methyltr 99.0 4.1E-09 1.4E-13 100.9 16.2 131 192-332 315-463 (490)
236 3n71_A Histone lysine methyltr 99.0 2.8E-09 9.7E-14 102.1 14.6 104 5-108 310-434 (490)
237 2kc7_A BFR218_protein; tetratr 99.0 4.5E-10 1.5E-14 82.9 7.1 87 238-336 6-93 (99)
238 3ly7_A Transcriptional activat 99.0 5.4E-08 1.9E-12 87.8 20.3 155 30-221 186-345 (372)
239 3u64_A Protein TP_0956; tetrat 99.0 4.5E-08 1.5E-12 84.6 18.4 182 137-336 51-272 (301)
240 3ly7_A Transcriptional activat 99.0 3.4E-08 1.2E-12 89.1 17.8 75 260-339 271-345 (372)
241 3u64_A Protein TP_0956; tetrat 98.9 9E-08 3.1E-12 82.7 18.5 29 56-84 50-78 (301)
242 3bee_A Putative YFRE protein; 98.9 1.8E-08 6.2E-13 72.7 12.0 75 34-108 2-79 (93)
243 1klx_A Cysteine rich protein B 98.9 3.7E-08 1.3E-12 77.5 14.6 112 200-335 9-128 (138)
244 1klx_A Cysteine rich protein B 98.9 4.1E-08 1.4E-12 77.2 14.6 120 166-311 9-136 (138)
245 1pc2_A Mitochondria fission pr 98.8 3.6E-08 1.2E-12 76.8 11.5 97 19-115 13-114 (152)
246 2v5f_A Prolyl 4-hydroxylase su 98.8 6.8E-08 2.3E-12 71.7 11.1 78 2-79 3-87 (104)
247 3bee_A Putative YFRE protein; 98.8 1.3E-07 4.3E-12 68.2 12.0 70 149-218 3-75 (93)
248 1pc2_A Mitochondria fission pr 98.8 7.4E-08 2.5E-12 75.0 11.4 95 135-229 15-114 (152)
249 3qww_A SET and MYND domain-con 98.7 9.7E-08 3.3E-12 89.9 12.3 102 8-109 302-424 (433)
250 3qww_A SET and MYND domain-con 98.7 1.3E-07 4.5E-12 89.1 12.9 98 236-334 302-412 (433)
251 3qwp_A SET and MYND domain-con 98.7 2.6E-07 8.9E-12 87.2 13.7 95 238-333 293-400 (429)
252 3qwp_A SET and MYND domain-con 98.6 3.8E-07 1.3E-11 86.1 14.4 108 6-113 289-417 (429)
253 2v5f_A Prolyl 4-hydroxylase su 98.5 1.2E-06 4.1E-11 64.8 11.6 77 37-113 4-87 (104)
254 4g26_A Pentatricopeptide repea 98.3 0.00016 5.4E-09 69.8 23.9 174 154-345 28-218 (501)
255 1nzn_A CGI-135 protein, fissio 98.3 7.4E-06 2.5E-10 61.3 11.1 100 16-115 13-117 (126)
256 1nzn_A CGI-135 protein, fissio 98.3 1.2E-05 4.1E-10 60.2 11.6 95 135-229 18-117 (126)
257 2guz_B Mitochondrial import in 98.1 2.6E-06 8.7E-11 55.5 4.5 51 356-415 4-57 (65)
258 3ffl_A Anaphase-promoting comp 98.1 2.7E-05 9.2E-10 61.0 10.5 109 6-115 22-164 (167)
259 4g26_A Pentatricopeptide repea 98.1 0.0013 4.4E-08 63.4 23.8 166 42-220 30-211 (501)
260 3ffl_A Anaphase-promoting comp 98.0 0.0002 6.9E-09 56.1 13.2 108 237-344 25-162 (167)
261 4h7y_A Dual specificity protei 98.0 0.00015 5E-09 55.5 12.0 53 246-302 74-126 (161)
262 4h7y_A Dual specificity protei 97.9 0.00046 1.6E-08 52.8 13.4 106 2-108 11-130 (161)
263 3o48_A Mitochondria fission 1 97.8 0.0011 3.7E-08 49.7 13.4 82 269-350 39-125 (134)
264 1y8m_A FIS1; mitochondria, unk 97.7 0.0018 6.1E-08 49.3 13.9 80 149-228 36-119 (144)
265 3txn_A 26S proteasome regulato 97.7 0.0063 2.2E-07 55.9 19.8 199 73-320 20-236 (394)
266 3o48_A Mitochondria fission 1 97.6 0.00076 2.6E-08 50.6 10.9 82 37-118 39-124 (134)
267 1y8m_A FIS1; mitochondria, unk 97.6 0.0022 7.6E-08 48.7 13.6 81 35-115 36-120 (144)
268 1qsa_A Protein (soluble lytic 97.5 0.057 2E-06 53.0 25.3 306 5-332 7-347 (618)
269 3kae_A CDC27, possible protein 97.3 0.042 1.4E-06 42.8 18.9 190 128-336 12-240 (242)
270 2wpv_A GET4, UPF0363 protein Y 97.2 0.06 2.1E-06 47.6 19.9 64 269-332 133-216 (312)
271 3kae_A CDC27, possible protein 97.1 0.041 1.4E-06 42.9 15.1 97 6-107 35-149 (242)
272 3lpz_A GET4 (YOR164C homolog); 97.0 0.15 5.3E-06 45.2 27.5 64 269-332 135-215 (336)
273 3txn_A 26S proteasome regulato 97.0 0.11 3.8E-06 47.7 20.3 177 154-336 21-213 (394)
274 4gns_B Protein CSD3, chitin bi 97.0 0.0082 2.8E-07 60.0 13.3 122 198-330 260-397 (754)
275 2ff4_A Probable regulatory pro 96.9 0.052 1.8E-06 50.2 17.3 94 239-332 122-233 (388)
276 1zbp_A Hypothetical protein VP 96.9 0.025 8.5E-07 48.3 13.5 62 162-223 7-68 (273)
277 3mkq_A Coatomer beta'-subunit; 96.8 0.084 2.9E-06 54.2 19.8 46 162-212 662-707 (814)
278 2ff4_A Probable regulatory pro 96.7 0.031 1E-06 51.8 13.7 95 6-100 117-233 (388)
279 1zbp_A Hypothetical protein VP 96.6 0.052 1.8E-06 46.3 13.6 58 14-71 7-64 (273)
280 4b4t_P 26S proteasome regulato 96.5 0.45 1.5E-05 44.8 20.6 174 153-335 138-326 (445)
281 4gns_B Protein CSD3, chitin bi 96.4 0.1 3.5E-06 52.2 16.4 125 51-178 261-397 (754)
282 3mkq_A Coatomer beta'-subunit; 96.3 0.63 2.2E-05 47.6 22.8 165 12-210 607-773 (814)
283 1qsa_A Protein (soluble lytic 95.8 1.6 5.4E-05 42.9 31.1 287 26-333 57-410 (618)
284 4b4t_P 26S proteasome regulato 95.4 1.7 6E-05 40.8 21.0 199 131-334 29-248 (445)
285 3mkq_B Coatomer subunit alpha; 95.4 0.13 4.3E-06 41.1 9.7 45 49-98 16-60 (177)
286 3mkq_B Coatomer subunit alpha; 95.4 0.8 2.7E-05 36.5 14.3 102 160-295 13-114 (177)
287 4fhn_B Nucleoporin NUP120; pro 95.0 3.4 0.00012 44.1 22.3 141 41-212 815-964 (1139)
288 1ya0_A SMG-7 transcript varian 95.0 0.17 5.8E-06 48.2 11.0 77 40-116 154-230 (497)
289 3lpz_A GET4 (YOR164C homolog); 94.9 2 6.8E-05 38.2 25.3 140 40-179 57-214 (336)
290 4b4t_R RPN7, 26S proteasome re 94.9 0.3 1E-05 45.8 12.3 107 185-300 130-238 (429)
291 4b4t_R RPN7, 26S proteasome re 94.3 0.41 1.4E-05 44.9 11.9 97 239-336 138-240 (429)
292 3spa_A Mtrpol, DNA-directed RN 94.2 0.67 2.3E-05 47.8 13.4 91 239-334 134-231 (1134)
293 1ya0_A SMG-7 transcript varian 93.9 0.42 1.5E-05 45.4 11.1 53 74-126 154-206 (497)
294 4b4t_S RPN3, 26S proteasome re 93.3 0.48 1.6E-05 44.8 10.0 129 161-303 145-303 (523)
295 3lvg_A Clathrin heavy chain 1; 93.2 4.3E-06 1.5E-10 76.9 -23.1 222 3-281 53-274 (624)
296 3spa_A Mtrpol, DNA-directed RN 92.8 1.5 5.3E-05 45.2 13.4 94 6-101 129-230 (1134)
297 4fhn_B Nucleoporin NUP120; pro 92.8 7.7 0.00026 41.4 19.7 171 191-382 817-1011(1139)
298 4b4t_S RPN3, 26S proteasome re 92.6 0.37 1.3E-05 45.6 8.2 67 268-336 229-302 (523)
299 2wpv_A GET4, UPF0363 protein Y 87.9 14 0.00046 32.6 22.4 170 10-179 19-215 (312)
300 4ady_A RPN2, 26S proteasome re 86.7 31 0.0011 35.5 23.1 274 14-318 384-679 (963)
301 1wy6_A Hypothetical protein ST 80.6 16 0.00056 27.5 12.7 80 246-334 75-155 (172)
302 3ax2_A Mitochondrial import re 80.0 4.5 0.00015 26.6 5.3 30 8-37 21-50 (73)
303 2qx5_A Nucleoporin NIC96; mRNA 79.1 42 0.0014 33.1 14.2 32 305-337 537-570 (661)
304 4gq2_M Nucleoporin NUP120; bet 78.1 52 0.0018 34.3 15.5 53 158-214 816-868 (950)
305 3ax2_A Mitochondrial import re 76.6 8.6 0.0003 25.3 5.8 29 308-336 21-49 (73)
306 2vkj_A TM1634; membrane protei 72.6 6.4 0.00022 26.6 4.4 30 4-33 53-82 (106)
307 2w2u_A Hypothetical P60 katani 72.2 16 0.00054 24.7 6.6 29 4-32 19-47 (83)
308 4gq2_M Nucleoporin NUP120; bet 70.0 1.1E+02 0.0037 31.9 16.0 52 192-259 816-867 (950)
309 2v6y_A AAA family ATPase, P60 69.2 20 0.00069 24.2 6.6 27 6-32 13-39 (83)
310 3re2_A Predicted protein; meni 69.2 13 0.00043 33.0 6.8 45 289-333 276-325 (472)
311 1om2_A Protein (mitochondrial 67.0 7.8 0.00027 27.0 4.1 28 9-36 25-52 (95)
312 4a5x_A MITD1, MIT domain-conta 65.6 8.3 0.00028 26.4 4.1 28 5-32 17-44 (86)
313 2crb_A Nuclear receptor bindin 63.5 13 0.00044 25.5 4.5 26 270-295 15-40 (97)
314 2crb_A Nuclear receptor bindin 63.5 12 0.00041 25.7 4.4 24 7-30 18-41 (97)
315 2ijq_A Hypothetical protein; s 62.4 53 0.0018 25.5 8.9 28 7-34 35-62 (161)
316 1om2_A Protein (mitochondrial 61.7 16 0.00055 25.4 4.9 28 309-336 25-52 (95)
317 2rpa_A Katanin P60 ATPase-cont 61.4 8.6 0.00029 25.7 3.4 26 7-32 15-40 (78)
318 3t5x_A PCI domain-containing p 60.9 19 0.00065 29.4 6.2 34 38-71 14-47 (203)
319 4ady_A RPN2, 26S proteasome re 59.9 1.6E+02 0.0056 30.4 30.2 193 130-342 386-597 (963)
320 2v6x_A Vacuolar protein sortin 59.4 12 0.00042 25.4 4.1 25 7-31 16-40 (85)
321 3mkr_B Coatomer subunit alpha; 59.3 92 0.0032 27.3 14.4 107 236-342 106-236 (320)
322 3mv2_A Coatomer subunit alpha; 58.2 97 0.0033 27.2 15.2 106 237-342 119-245 (325)
323 1wfd_A Hypothetical protein 15 57.4 14 0.00047 25.7 4.1 24 7-30 18-41 (93)
324 2pk2_A Cyclin-T1, protein TAT; 56.8 8.3 0.00028 34.8 3.7 29 357-387 220-248 (358)
325 2cfu_A SDSA1; SDS-hydrolase, l 56.6 17 0.00057 36.1 6.1 50 38-87 449-498 (658)
326 4aez_C MAD3, mitotic spindle c 55.5 87 0.003 25.8 10.6 50 287-336 131-182 (223)
327 2ijq_A Hypothetical protein; s 55.5 71 0.0024 24.8 9.5 60 239-298 39-103 (161)
328 4a1g_A Mitotic checkpoint seri 54.7 70 0.0024 24.5 9.9 50 287-336 82-133 (152)
329 2wvi_A Mitotic checkpoint seri 54.2 75 0.0026 24.7 10.5 61 270-336 66-128 (164)
330 2cpt_A SKD1 protein, vacuolar 53.6 15 0.0005 26.9 3.9 11 21-31 16-26 (117)
331 3lvg_A Clathrin heavy chain 1; 53.0 0.045 1.5E-06 51.0 -11.7 129 7-164 147-275 (624)
332 2cwy_A Hypothetical protein TT 52.7 55 0.0019 22.7 6.8 27 9-35 6-32 (94)
333 2w2u_A Hypothetical P60 katani 51.2 40 0.0014 22.7 5.5 21 239-259 26-46 (83)
334 3t5x_A PCI domain-containing p 51.1 35 0.0012 27.8 6.3 31 6-36 16-46 (203)
335 3bu8_A Telomeric repeat-bindin 50.9 1E+02 0.0034 25.2 8.5 73 88-164 88-160 (235)
336 1wy6_A Hypothetical protein ST 48.7 85 0.0029 23.8 13.0 57 159-215 98-154 (172)
337 3t5v_B Nuclear mRNA export pro 48.6 36 0.0012 31.8 6.6 103 201-303 141-254 (455)
338 3esl_A Checkpoint serine/threo 45.9 1.2E+02 0.004 24.6 10.0 80 206-300 57-145 (202)
339 3mv2_A Coatomer subunit alpha; 45.7 1.6E+02 0.0054 25.9 12.6 47 272-332 209-255 (325)
340 2cfu_A SDSA1; SDS-hydrolase, l 45.7 33 0.0011 34.0 6.2 52 71-122 448-499 (658)
341 2v6y_A AAA family ATPase, P60 45.5 47 0.0016 22.4 5.2 20 240-259 19-38 (83)
342 4abx_A DNA repair protein RECN 45.4 48 0.0016 26.2 6.1 49 288-336 74-122 (175)
343 2rpa_A Katanin P60 ATPase-cont 45.0 22 0.00076 23.7 3.3 27 306-332 14-40 (78)
344 2cwy_A Hypothetical protein TT 44.5 68 0.0023 22.2 6.0 58 239-298 8-67 (94)
345 2vkj_A TM1634; membrane protei 40.6 84 0.0029 21.3 5.9 33 305-337 54-86 (106)
346 3t5v_B Nuclear mRNA export pro 40.5 1.4E+02 0.0047 27.9 9.2 92 191-286 181-281 (455)
347 1o9d_A 14-3-3-like protein C; 39.3 1.8E+02 0.006 24.7 17.7 44 153-196 9-55 (260)
348 1wfd_A Hypothetical protein 15 37.0 85 0.0029 21.6 5.5 16 282-297 27-42 (93)
349 3myv_A SUSD superfamily protei 36.8 88 0.003 29.2 7.5 29 304-332 190-218 (454)
350 2br9_A 14-3-3E, 14-3-3 protein 36.5 1.8E+02 0.0063 24.1 17.7 43 154-196 7-50 (234)
351 2ynq_A ESSB; membrane protein, 35.1 1.5E+02 0.0053 22.8 8.9 87 6-98 10-99 (161)
352 3kez_A Putative sugar binding 34.4 98 0.0033 28.9 7.4 29 304-332 196-224 (461)
353 3re2_A Predicted protein; meni 33.8 2.4E+02 0.0083 25.2 8.8 44 57-100 276-324 (472)
354 2v6x_A Vacuolar protein sortin 33.2 92 0.0031 20.9 5.2 17 243-259 24-40 (85)
355 4a5x_A MITD1, MIT domain-conta 32.2 1.2E+02 0.004 20.6 7.1 22 276-297 22-43 (86)
356 3lxu_X Tripeptidyl-peptidase 2 31.3 5.4E+02 0.018 27.9 14.8 51 300-350 1280-1330(1354)
357 3mkr_B Coatomer subunit alpha; 31.1 2.7E+02 0.0093 24.4 14.9 31 272-302 200-230 (320)
358 3lew_A SUSD-like carbohydrate 30.9 1.2E+02 0.0041 28.7 7.4 30 304-333 203-232 (495)
359 3mcx_A SUSD superfamily protei 30.5 1.1E+02 0.0037 28.8 7.0 30 304-333 202-231 (477)
360 2cpt_A SKD1 protein, vacuolar 30.1 1E+02 0.0035 22.3 5.3 16 283-298 31-46 (117)
361 3ubw_A 14-3-3E, 14-3-3 protein 30.0 2.5E+02 0.0086 23.7 19.3 59 152-210 31-91 (261)
362 2yhe_A SEC-alkyl sulfatase; hy 35.3 12 0.00039 37.2 0.0 51 39-89 462-512 (668)
363 3lew_A SUSD-like carbohydrate 27.4 1.5E+02 0.005 28.1 7.3 32 269-300 202-233 (495)
364 3uzd_A 14-3-3 protein gamma; s 27.1 2.8E+02 0.0095 23.3 17.8 57 154-210 6-64 (248)
365 3u84_A Menin; MLL, JUND, ledgf 27.0 1.9E+02 0.0065 26.4 7.2 76 239-333 264-347 (550)
366 2dl1_A Spartin; SPG20, MIT, st 26.9 86 0.003 22.7 4.2 60 286-353 19-83 (116)
367 2e2a_A Protein (enzyme IIA); h 26.8 84 0.0029 22.3 4.1 26 5-30 21-46 (105)
368 1wcr_A PTS system, N, N'-diace 26.5 86 0.003 22.2 4.1 26 5-30 19-44 (103)
369 3myv_A SUSD superfamily protei 26.2 1.3E+02 0.0045 28.0 6.7 31 71-101 189-219 (454)
370 2pmr_A Uncharacterized protein 24.3 99 0.0034 21.0 3.9 26 4-29 39-64 (87)
371 3mcx_A SUSD superfamily protei 24.2 1.6E+02 0.0055 27.5 7.0 30 72-101 202-231 (477)
372 3iqu_A 14-3-3 protein sigma; s 24.2 3.1E+02 0.011 22.8 16.7 58 153-210 9-68 (236)
373 2oo2_A Hypothetical protein AF 24.1 1E+02 0.0035 20.9 3.9 27 3-29 34-60 (86)
374 3bqo_A Telomeric repeat-bindin 24.1 1.6E+02 0.0055 23.7 5.6 27 39-65 23-52 (211)
375 3k1s_A PTS system, cellobiose- 23.6 1E+02 0.0035 22.0 4.1 26 5-30 23-48 (109)
376 3kez_A Putative sugar binding 23.6 1.5E+02 0.0051 27.7 6.5 30 72-101 196-225 (461)
377 4b4t_O 26S proteasome regulato 23.4 4.1E+02 0.014 24.0 11.4 94 239-332 83-197 (393)
378 4b4t_O 26S proteasome regulato 23.2 4.2E+02 0.014 24.0 11.7 60 239-298 134-197 (393)
379 3lxu_X Tripeptidyl-peptidase 2 23.0 7.5E+02 0.026 26.8 16.8 40 281-321 1295-1334(1354)
380 3l8r_A PTCA, putative PTS syst 22.7 1.1E+02 0.0037 22.3 4.1 25 6-30 39-63 (120)
381 4gq4_A Menin; tumor suppressor 21.9 2.8E+02 0.0094 25.4 7.2 62 269-330 261-329 (489)
382 3qnk_A Putative lipoprotein; a 21.4 2.2E+02 0.0075 27.0 7.4 30 304-333 182-211 (517)
383 3bu8_A Telomeric repeat-bindin 21.2 3.4E+02 0.012 22.2 9.6 59 202-264 88-146 (235)
384 3u84_A Menin; MLL, JUND, ledgf 21.2 1.6E+02 0.0055 26.9 5.6 74 12-100 265-346 (550)
385 2uwj_G Type III export protein 20.6 2.3E+02 0.0079 20.0 8.8 75 133-213 21-95 (115)
386 2p58_C Putative type III secre 20.3 2.3E+02 0.008 20.0 9.7 74 133-212 22-95 (116)
387 3bqo_A Telomeric repeat-bindin 20.3 2.1E+02 0.0071 23.1 5.5 41 158-198 123-163 (211)
No 1
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.5e-54 Score=420.40 Aligned_cols=423 Identities=27% Similarity=0.387 Sum_probs=399.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
.++..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214 82 NIALGDAPTARSNLKALQELDPDNP---AIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK 158 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 158 (470)
|..+|++++|+..|+++++++|++. .++..++.++.....+..+..++..|++++|+..+++++...|.+..++..+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238 (470)
Q Consensus 159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 238 (470)
|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|++...+..+..+.........
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888777777778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 318 (470)
|.++...|++++|+.+|++++...|+++.....++..+|.++...|++++|+..+++++.++|+++.++..+|.++...|
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999776556789999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhh
Q psy16214 319 QYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQK 397 (470)
Q Consensus 319 ~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~ 397 (470)
++++|+..|+++++++|+ ..+...+..+....+.....++|+.+|+...++..+++++|+++++++|||+.+. +..+
T Consensus 344 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~--~~~~ 421 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN--EEEK 421 (450)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS--HHHH
T ss_pred CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC--chHH
Confidence 999999999999999998 7788899999999999999999999999999999999999999999999999876 4457
Q ss_pred HHHHHHHHHHHHHHhhcCChhhhhhccCC
Q psy16214 398 LEQEKLFKEVGEAYGILSDPTKRSRYDRG 426 (470)
Q Consensus 398 ~~~~~~~~~i~~ay~~l~d~~~~~~yd~~ 426 (470)
+.++++|+.|++||++|||++||.+||+|
T Consensus 422 ~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 422 KKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp HHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 78999999999999999999999999987
No 2
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.4e-41 Score=318.65 Aligned_cols=353 Identities=22% Similarity=0.310 Sum_probs=338.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
+++.++.+|..++..|+|++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDP---DNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA 159 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 159 (470)
...|++++|+..++++++..| +++.++..++.+......+..|..+...|++++|+..+++++...|.++.++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 99999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++..++..+..+..+......|
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888887788888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ 319 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 319 (470)
.++...|++++|+..+++++...|+++.....++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999998766567788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhcccc
Q psy16214 320 YKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKRSEV 355 (470)
Q Consensus 320 ~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~~~~ 355 (470)
+++|+..|+++++++|+ ..+...+.++...++++++
T Consensus 322 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 358 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358 (359)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998 7778888888888776543
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.5e-38 Score=301.90 Aligned_cols=319 Identities=17% Similarity=0.094 Sum_probs=241.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214 9 EDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA 88 (470)
Q Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 88 (470)
.+|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH----------------------HHhcCCHHHHHHHHHHHHH
Q psy16214 89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASK----------------------AFEANDYRTAMFYLDRAMD 146 (470)
Q Consensus 89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~----------------------~~~~~~~~~A~~~~~~~l~ 146 (470)
++|+..|++++.++|++..++..++.++...+++..|.. +...|++++|+..+++++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666666666666666666665544433333322 3445888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 147 QGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 147 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
..|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++..++..+
T Consensus 164 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 243 (388)
T 1w3b_A 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888887777776
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306 (470)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (470)
|.++...|++++|+..|++++...|++ +.++..+|.++...|++++|+..++++++++|+++.+
T Consensus 244 ------------~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 307 (388)
T 1w3b_A 244 ------------ACVYYEQGLIDLAIDTYRRAIELQPHF----PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHHHTCSSC----HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ------------HHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH
Confidence 888888888888888888888888884 4568888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHH
Q psy16214 307 LSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFL 343 (470)
Q Consensus 307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l 343 (470)
+..+|.++...|++++|+..+++++++.|+ ......+
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 345 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 888888888888888888888888888886 3333333
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.4e-39 Score=305.56 Aligned_cols=328 Identities=18% Similarity=0.199 Sum_probs=289.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
++..+..+|..++..|++++|+..++.++..+|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.++
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 45667777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH----------------------HHhcCCHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASK----------------------AFEANDYRTAMFY 140 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~----------------------~~~~~~~~~A~~~ 140 (470)
...|++++|+..|+++++.+|++..++..++.++...+++..|.. +...|++++|+..
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888888888887777777777765555544443 3456999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH
Q psy16214 141 LDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220 (470)
Q Consensus 141 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 220 (470)
+++++..+|+...++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++
T Consensus 192 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 271 (388)
T 1w3b_A 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214 221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300 (470)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (470)
.++..+ |.++...|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..++++++++
T Consensus 272 ~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 272 DAYCNL------------ANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHH------------HHHHHHHSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 988888 999999999999999999999999984 5679999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q psy16214 301 PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEA 346 (470)
Q Consensus 301 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~ 346 (470)
|+++.++..+|.++...|++++|+..|+++++++|+ .++...+..+
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence 999999999999999999999999999999999997 5555555443
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-35 Score=286.31 Aligned_cols=317 Identities=18% Similarity=0.180 Sum_probs=205.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
..++.++.+|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999 589999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH--------------------------------------------
Q psy16214 82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALET-------------------------------------------- 117 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-------------------------------------------- 117 (470)
+..+|++++|+..|++++...|.+............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999999998855332211111000
Q ss_pred -----------------------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHH
Q psy16214 118 -----------------------MAKNFEGASKAFE---ANDYRTAMFYLDRAMD-----Q--G-------VASKTYKLM 157 (470)
Q Consensus 118 -----------------------~~~~~~~a~~~~~---~~~~~~A~~~~~~~l~-----~--~-------p~~~~~~~~ 157 (470)
....+..+...+. .|++++|+..+++++. . . |....++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1111222222332 4555566665555555 3 2 233345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q psy16214 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237 (470)
Q Consensus 158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 237 (470)
+|.++...|++++|+..+++++...|. +.++..+|.++...|++++|+..+++++..+|++..++..+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l----------- 310 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR----------- 310 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHH-----------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHH-----------
Confidence 555555566666666666665555555 55555555555555555555555555555555555555444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL 317 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 317 (470)
|.++...|++++|+..+++++...|.+. .++..+|.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus 311 -~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 311 -GQMNFILQNYDQAGKDFDKAKELDPENI----FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK 385 (514)
T ss_dssp -HHHHHHTTCTTHHHHHHHHHHHTCSSCS----HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT
T ss_pred -HHHHHHhCCHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Confidence 5555555555555555555555544422 23444555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q psy16214 318 GQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 318 g~~~~A~~~~~~a~~~~p~ 336 (470)
|++++|+..+++++++.|+
T Consensus 386 ~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENK 404 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhhhc
Confidence 5555555555555544443
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.8e-35 Score=291.48 Aligned_cols=321 Identities=20% Similarity=0.231 Sum_probs=217.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.++.++.+|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCC-----------------------------------------------------------
Q psy16214 83 IALGDAPTARSNLKALQELDP----------------------------------------------------------- 103 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p----------------------------------------------------------- 103 (470)
..+|++++|+..|+ ++...|
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999988774 444444
Q ss_pred ---------------------------------------------------CChHHHH-------HHHHHHHHHHHHHHH
Q psy16214 104 ---------------------------------------------------DNPAIAQ-------ESKALETMAKNFEGA 125 (470)
Q Consensus 104 ---------------------------------------------------~~~~~~~-------~l~~~~~~~~~~~~a 125 (470)
+++..+. .++.++...+++..|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 3332222 122222111122222
Q ss_pred HHH---------------------HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q psy16214 126 SKA---------------------FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ 184 (470)
Q Consensus 126 ~~~---------------------~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 184 (470)
... ...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 263 QVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 211 12255555555555555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR 264 (470)
Q Consensus 185 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 264 (470)
++.++..+|.++...|++++|+..+++++...|++..++..+ |.++...|++++|+..|++++...|+
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF------------AEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 555555555555555555555555555555555555555544 67777777777777777777766665
Q ss_pred Cccch--HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 265 NININ--SKLLHNRATVLFKM----------GKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 265 ~~~~~--~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
+.... ...+..+|.++... |++++|+..++++++.+|+++.++..+|.++..+|++++|+..|+++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44321 22355566677766 7777777777777777777777777777777777777777777777777
Q ss_pred cCCC
Q psy16214 333 MDNS 336 (470)
Q Consensus 333 ~~p~ 336 (470)
+.|+
T Consensus 491 ~~~~ 494 (537)
T 3fp2_A 491 LART 494 (537)
T ss_dssp HC--
T ss_pred hCCC
Confidence 7776
No 7
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=264.78 Aligned_cols=291 Identities=14% Similarity=0.050 Sum_probs=270.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
+++.+..+|..++..|+|++|+..|++++..+|.++.++..++.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcC-ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 83 IALG-DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC 161 (470)
Q Consensus 83 ~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 161 (470)
...| ++++|+..++++++++|+++.++..++.+ +...|++++|+..+++++...|.....+..+|.+
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~------------~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHS------------FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHH------------HHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHH------------HHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999 99999999999999999999998777666 6677999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC---------CChHHHHHHHHHHHHH
Q psy16214 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA---------PDHAKAKETYKRAKLL 232 (470)
Q Consensus 162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~~~~~~~~ 232 (470)
+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++... |....++..+
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------ 242 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL------ 242 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHH------
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHH------
Confidence 9999999999999999999999999999999999999999999999999999976 5556677777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK 312 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 312 (470)
|.++...|++++|+.++++++...|++ ..++..+|.++..+|++++|+.+++++++++|+++.++..++.
T Consensus 243 ------a~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 243 ------GHVCRKLKKYAEALDYHRQALVLIPQN----ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp ------HHHHHHTTCHHHHHHHHHHHHHHSTTC----SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred ------HHHHHHhcCHHHHHHHHHHHHhhCccc----hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence 999999999999999999999999984 4569999999999999999999999999999999999999999
Q ss_pred HH-HHhCCHH
Q psy16214 313 CF-HALGQYK 321 (470)
Q Consensus 313 ~~-~~~g~~~ 321 (470)
++ ...|+.+
T Consensus 313 ~~~~~~g~~~ 322 (330)
T 3hym_B 313 CIEMYIGDSE 322 (330)
T ss_dssp HHHTTTTC--
T ss_pred HHHHHhCchh
Confidence 98 5666643
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-33 Score=280.09 Aligned_cols=329 Identities=14% Similarity=0.029 Sum_probs=280.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHH------------------------------------
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAA------------------------------------ 46 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~------------------------------------ 46 (470)
++..|..+|..+...|++++|+..|+++++.+|+++.++..++.
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 46789999999999999999999999999999987776665543
Q ss_pred --HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q psy16214 47 --CYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEG 124 (470)
Q Consensus 47 --~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 124 (470)
+|...|++++|+..++++++. |.+..++..++.++...|++++|+..|+++++..|++..++..++.++...+.+..
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHH
Confidence 233556777777777777766 56677777777777777777777777777777777777777666666655444443
Q ss_pred HH----------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q psy16214 125 AS----------------------KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182 (470)
Q Consensus 125 a~----------------------~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 182 (470)
|. .+...|++++|+..++++++..|.+..++..++.++...|++++|+..+++++...
T Consensus 358 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33 34556999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262 (470)
Q Consensus 183 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 262 (470)
|.+..++..+|.++...|++++|+..|+++++..|.++.++..+ |.++...|++++|+..|+++++..
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL------------GVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888887 999999999999999999999985
Q ss_pred cc---CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hh
Q psy16214 263 AR---NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RE 338 (470)
Q Consensus 263 p~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~ 338 (470)
|+ ++.....++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...|++++|+..|+++++++|+ ..
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 43 333236789999999999999999999999999999999999999999999999999999999999999997 44
Q ss_pred HHHHHH
Q psy16214 339 NHNFLE 344 (470)
Q Consensus 339 ~~~~l~ 344 (470)
....+.
T Consensus 586 ~~~~l~ 591 (597)
T 2xpi_A 586 ASDLLK 591 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.2e-33 Score=270.43 Aligned_cols=310 Identities=17% Similarity=0.117 Sum_probs=280.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHHHH-
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS---KGLIRQ- 78 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l- 78 (470)
++..++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++. .++..+
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 138 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 138 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999999988 776555
Q ss_pred -----------HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214 79 -----------IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ 147 (470)
Q Consensus 79 -----------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 147 (470)
|.++...|++++|+..|+++++..|.+..++..++.+ +...|++++|+..+++++..
T Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC------------FIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHTTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH------------HHHCCCHHHHHHHHHHHHHh
Confidence 6779999999999999999999999999988766666 67789999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHH------------HHHHhccCChHHHHHHHHHHHhh
Q psy16214 148 GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVR------------GLCLYYDDKMDLAVNHFQLLLKL 215 (470)
Q Consensus 148 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~ 215 (470)
+|.++.++..+|.++...|++++|+..+++++...|++...+..+ |.++...|++++|+..|++++..
T Consensus 207 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999887766 99999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214 216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTL 295 (470)
Q Consensus 216 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (470)
.|+++..... .+...|.++...|++++|+..+++++...|+ ...++..+|.++...|++++|+..+++
T Consensus 287 ~p~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 287 EPSIAEYTVR--------SKERICHCFSKDEKPVEAIRVCSEVLQMEPD----NVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp CCSSHHHHHH--------HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchHHHHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9997652211 1122399999999999999999999999998 457799999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHH------------HHHhC-----CHHHHHHHHHH-HHhcCCC
Q psy16214 296 ALEKDPNYLKALSRRCKC------------FHALG-----QYKECVIDAEK-IYKMDNS 336 (470)
Q Consensus 296 al~~~p~~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-a~~~~p~ 336 (470)
+++++|+++.++..++.+ |..+| +.+++.+.|++ +++..|+
T Consensus 355 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999955 44445 56778888886 8888886
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=276.93 Aligned_cols=328 Identities=14% Similarity=0.093 Sum_probs=238.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF----------- 71 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----------- 71 (470)
++..+..+|.+++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|++++..+|.+
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999887632
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Q psy16214 72 --------------------------------------------------------------------SKGLIRQIKCNI 83 (470)
Q Consensus 72 --------------------------------------------------------------------~~~~~~la~~~~ 83 (470)
..+++.+|.++.
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (514)
T 2gw1_A 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197 (514)
T ss_dssp HHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 666777788777
Q ss_pred H---cCChHHHHHHHHHHHh-----c--CCCC-------hHHHHHHHHHHHHHHHHHHHH--------------------
Q psy16214 84 A---LGDAPTARSNLKALQE-----L--DPDN-------PAIAQESKALETMAKNFEGAS-------------------- 126 (470)
Q Consensus 84 ~---~g~~~~A~~~~~~~l~-----~--~p~~-------~~~~~~l~~~~~~~~~~~~a~-------------------- 126 (470)
. .|++++|+..++++++ + .|++ ..++..++.++...+.+..|.
T Consensus 198 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~ 277 (514)
T 2gw1_A 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMA 277 (514)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHH
Confidence 6 8889999999999988 5 5544 334444444433322222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHH
Q psy16214 127 -KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLA 205 (470)
Q Consensus 127 -~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 205 (470)
.+...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHH
Confidence 2233355555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc--hHHHHHHHHHHHHH-
Q psy16214 206 VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI--NSKLLHNRATVLFK- 282 (470)
Q Consensus 206 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~la~~~~~- 282 (470)
+..+++++...|+++.++..+ |.++...|++++|+..+++++...|.++.. ...++..+|.++..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 358 ETLFSEAKRKFPEAPEVPNFF------------AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425 (514)
T ss_dssp HHHHHHHHHHSTTCSHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcccCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence 555555555555555555544 888888888888888888888888875431 02368888888888
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHH
Q psy16214 283 --MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNF 342 (470)
Q Consensus 283 --~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~ 342 (470)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+ .+....
T Consensus 426 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 888888888888888888888888888888888888888888888888888887 344333
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=258.06 Aligned_cols=296 Identities=17% Similarity=0.086 Sum_probs=267.2
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q psy16214 27 YSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP 106 (470)
Q Consensus 27 ~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 106 (470)
....+...|+++..+..+|.+++..|++++|+..++++++.+|.+..++..++.++...|++++|+..++++++.+|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 44556667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q psy16214 107 AIAQESKALETMAKNFEGASKAFEAN-DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN 185 (470)
Q Consensus 107 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 185 (470)
.++..++.+ +...| ++++|+..+++++..+|....++..+|.++...|++++|+..+++++...|.+
T Consensus 91 ~~~~~l~~~------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 158 (330)
T 3hym_B 91 VSWFAVGCY------------YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC 158 (330)
T ss_dssp HHHHHHHHH------------HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHH------------HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc
Confidence 998776665 67778 99999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Q psy16214 186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN 265 (470)
Q Consensus 186 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 265 (470)
..++..+|.++...|++++|+..+++++...|++..++..+ |.++...|++++|+..+++++...|..
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~~~~ 226 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV------------GVVAFQNGEWKTAEKWFLDALEKIKAI 226 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHcccHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999888888 999999999999999999999886431
Q ss_pred c-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhH
Q psy16214 266 I-----NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-REN 339 (470)
Q Consensus 266 ~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~ 339 (470)
. .....++..+|.++..+|++++|+..++++++++|+++.++..+|.++..+|++++|+.+|+++++++|+ ...
T Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 1 1135689999999999999999999999999999999999999999999999999999999999999997 555
Q ss_pred HHHHHHH
Q psy16214 340 HNFLEEA 346 (470)
Q Consensus 340 ~~~l~~~ 346 (470)
...+..+
T Consensus 307 ~~~l~~~ 313 (330)
T 3hym_B 307 VTMLGHC 313 (330)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=4.6e-32 Score=253.78 Aligned_cols=294 Identities=17% Similarity=0.087 Sum_probs=269.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CCHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP---RFSKGLIRQ 78 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l 78 (470)
.++..++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+| +++.++..+
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 114 (359)
T 3ieg_A 35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999 888888777
Q ss_pred ------------HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy16214 79 ------------IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMD 146 (470)
Q Consensus 79 ------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 146 (470)
|.++...|++++|+..++++++..|.++.++..++.+ +...|++++|+..+++++.
T Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~A~~~~~~~~~ 182 (359)
T 3ieg_A 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC------------FIKEGEPRKAISDLKAASK 182 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH------------HHHCCCHHHHHHHHHHHHH
Confidence 7999999999999999999999999999887666665 7778999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHH------------HHHHHHhccCChHHHHHHHHHHHh
Q psy16214 147 QGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF------------VRGLCLYYDDKMDLAVNHFQLLLK 214 (470)
Q Consensus 147 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~l~ 214 (470)
..|.++.++..+|.++...|++++|+..++++++..|+++.++. .+|.++...|++++|+..+++++.
T Consensus 183 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988655 448889999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16214 215 LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294 (470)
Q Consensus 215 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (470)
..|+++..+... +...|.++...|++++|+..+++++...|++ +.++..+|.++...|++++|+..++
T Consensus 263 ~~~~~~~~~~~~--------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 263 TEPSVAEYTVRS--------KERICHCFSKDEKPVEAIRICSEVLQMEPDN----VNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HCCSSHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCchHHHHHH--------HHHHHHHHHHccCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999987543211 1223999999999999999999999999984 5679999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214 295 LALEKDPNYLKALSRRCKCFHALGQ 319 (470)
Q Consensus 295 ~al~~~p~~~~~~~~la~~~~~~g~ 319 (470)
++++++|++..++..++.++..+++
T Consensus 331 ~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 331 AAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999998876653
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=9.4e-34 Score=266.63 Aligned_cols=293 Identities=17% Similarity=0.103 Sum_probs=261.2
Q ss_pred HHHHhcCCHHHHHH-HHHHHhhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy16214 12 NTQYKLKQYSKALK-CYSEAISVCPNV----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG 86 (470)
Q Consensus 12 ~~~~~~g~~~~A~~-~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 86 (470)
..+...|+|++|+. .|++++...|++ ...++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 36677899999999 999999998876 4669999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----------
Q psy16214 87 DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKL---------- 156 (470)
Q Consensus 87 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~---------- 156 (470)
++++|+..++++++++|+++.++..++.+ +...|++++|+..+++++...|.....+.
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVS------------FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG 180 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhc
Confidence 99999999999999999999988776666 67789999999999999999998877664
Q ss_pred ------HHHHHHHHcCCHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHH
Q psy16214 157 ------MKAECLAHLNRLQEAQEIANSILATDKQ--NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKR 228 (470)
Q Consensus 157 ------~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 228 (470)
.++.++ ..|++++|+..+++++...|. ++.++..+|.++...|++++|+..+++++..+|++..++..+
T Consensus 181 ~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l-- 257 (368)
T 1fch_A 181 LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL-- 257 (368)
T ss_dssp -----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--
T ss_pred ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHH--
Confidence 456666 999999999999999999999 899999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q psy16214 229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY----- 303 (470)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 303 (470)
|.++...|++++|+..|++++...|. ...++..+|.++..+|++++|+..+++++.+.|++
T Consensus 258 ----------~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 258 ----------GATLANGNQSEEAVAAYRRALELQPG----YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred ----------HHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 99999999999999999999999998 45779999999999999999999999999999988
Q ss_pred ------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 304 ------LKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 304 ------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
..+|..+|.++..+|++++|...++++++.
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 899999999999999999999999877754
No 14
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-32 Score=270.54 Aligned_cols=309 Identities=10% Similarity=0.015 Sum_probs=260.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------------
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF------------- 71 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------------- 71 (470)
..++.+|..+...|++++|+..|++++.. |.++.++..++.+|...|++++|+..|++ ..|..
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~ 193 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQD 193 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC----------CCC
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhc---cCCccccccccccccccc
Confidence 45667777777777777777777777654 45677788888888888888888887775 34444
Q ss_pred ------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH-----------------------------
Q psy16214 72 ------SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE----------------------------- 116 (470)
Q Consensus 72 ------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~----------------------------- 116 (470)
..+|..+|.+|...|++++|+..|+++++.+|++..++..++.++
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 789999999999999999999999999999999988877664422
Q ss_pred ---------HHHHHHHHHH---------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy16214 117 ---------TMAKNFEGAS---------------------KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLN 166 (470)
Q Consensus 117 ---------~~~~~~~~a~---------------------~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~ 166 (470)
...+.+..|. .+...|++++|+..+++++...|.+..++..++.++...|
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC
Confidence 1223333333 3445689999999999999999988888889999999999
Q ss_pred CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16214 167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246 (470)
Q Consensus 167 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (470)
++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|.+...+..+ +.++...|
T Consensus 354 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g 421 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGF------------AHSFAIEG 421 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHT
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999988888877 99999999
Q ss_pred CHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16214 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVID 326 (470)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 326 (470)
++++|++.|++++...|.+ ..++..++.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..
T Consensus 422 ~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQGT----HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp CHHHHHHHHHHHHHTTTTC----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999998874 456889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy16214 327 AEKIYKM 333 (470)
Q Consensus 327 ~~~a~~~ 333 (470)
|++++++
T Consensus 498 ~~~~~~~ 504 (597)
T 2xpi_A 498 FQNALLL 504 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999988
No 15
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=261.39 Aligned_cols=372 Identities=12% Similarity=0.028 Sum_probs=288.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISV---------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL------- 67 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------- 67 (470)
+..+..+|.++...|++++|+++|++++++ +|....+|.++|.+|..+|++++|+.++++++++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456788999999999999999999999876 5667888999999999999999999999999986
Q ss_pred -CCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 68 -DPRFSKGLIRQIKCNIAL--GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRA 144 (470)
Q Consensus 68 -~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 144 (470)
.+..+.++..+|.++... +++++|+.+|+++++++|+++.++..++.+.... -..+++++|+..++++
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l---------~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL---------DNWPPSQNAIDPLRQA 201 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---------HHSCCCCCTHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------cCchHHHHHHHHHHHH
Confidence 345678888888887765 4799999999999999999999988777764432 3457788899999999
Q ss_pred HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH
Q psy16214 145 MDQGVASKTYKLMKAECLAH----LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220 (470)
Q Consensus 145 l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 220 (470)
++++|++..++..++..+.. .+++++|+.++++++..+|.++.++..+|.++...|++++|+..++++++.+|++.
T Consensus 202 l~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred hhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence 99999999999888877655 46788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy16214 221 KAKETYKRAKLLKAKKEE-------GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293 (470)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (470)
.++..+..+......... +......+.+++|+..+++++..+|.+... +..+|.++..+|++++|+.+|
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV----CSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCC----HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhh----hhhHHHHHHHhccHHHHHHHH
Confidence 988877443221111111 111222345788999999999999996654 899999999999999999999
Q ss_pred HHHHHhCCCCHH---HHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCChhH-HHHHHHHHHHhhcccccchhhhccCCCCC
Q psy16214 294 TLALEKDPNYLK---ALSRRCKC-FHALGQYKECVIDAEKIYKMDNSREN-HNFLEEAKRLLKRSEVKDYYKILGVTKNA 368 (470)
Q Consensus 294 ~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 368 (470)
++++++.|++.. ++..+|.+ +...|++++|+..|++++++.|+... ...+..+
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l---------------------- 415 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL---------------------- 415 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHH----------------------
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH----------------------
Confidence 999999987643 45667765 45789999999999999999997322 2222111
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhh-hhccCCCC
Q psy16214 369 SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKR-SRYDRGED 428 (470)
Q Consensus 369 ~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~-~~yd~~~~ 428 (470)
....+.++..+|+... .+..++.+|..++|.++. ..|...-+
T Consensus 416 ------~~~~~~~l~~~p~~~~------------~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 416 ------QKIAKMRLSKNGADSE------------ALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp ------HHHHHHHHHHCC-CTT------------HHHHHHHHHHHHHHCC-----------
T ss_pred ------HHHHHHHHHhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1122345667777433 377788888888775554 44444444
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1e-31 Score=265.95 Aligned_cols=299 Identities=15% Similarity=0.160 Sum_probs=269.8
Q ss_pred HHHHHHHHHHhhcCCc----hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy16214 21 SKALKCYSEAISVCPN----VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK 96 (470)
Q Consensus 21 ~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (470)
+.+...+..+....+. .+..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 83 (537)
T 3fp2_A 4 MNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83 (537)
T ss_dssp ----CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCchHHhhcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445555555544 478899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh----------------------------------------------
Q psy16214 97 ALQELDPDNPAIAQESKALETMAKNFEGASKAFE---------------------------------------------- 130 (470)
Q Consensus 97 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------------------- 130 (470)
++++++|+++.++..++.++...+++..|...++
T Consensus 84 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 163 (537)
T 3fp2_A 84 KALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred HHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence 9999999999999999999999888888876441
Q ss_pred ---------------------------------------------------cCCHHHHHHHHHHHHHhCCCCHH------
Q psy16214 131 ---------------------------------------------------ANDYRTAMFYLDRAMDQGVASKT------ 153 (470)
Q Consensus 131 ---------------------------------------------------~~~~~~A~~~~~~~l~~~p~~~~------ 153 (470)
.+++++|+..++++++..|++..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 243 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHH
Confidence 13788999999999999999865
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q psy16214 154 -YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL 232 (470)
Q Consensus 154 -~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 232 (470)
++..+|.++...|++++|+..+++++..+|. +.++..+|.++...|++++|+..+++++..+|+++.++..+
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------ 316 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR------ 316 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHH------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH------
Confidence 4677888999999999999999999999999 99999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK 312 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 312 (470)
|.++...|++++|+..+++++...|.++ .++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 317 ------~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 386 (537)
T 3fp2_A 317 ------GQMYFILQDYKNAKEDFQKAQSLNPENV----YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE 386 (537)
T ss_dssp ------HHHHHHTTCHHHHHHHHHHHHHHCTTCS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred ------HHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999999999999999999954 569999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 313 CFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 313 ~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++...|++++|+..|++++++.|+
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999875
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.7e-32 Score=263.40 Aligned_cols=318 Identities=12% Similarity=0.045 Sum_probs=252.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--------CchhHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVC--------PNVAAYYGNRAACYMMLG--MYTYALDDAKLAVSLDPRFSK 73 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~ 73 (470)
+..|.++|.+++..|++++|+.+|++++.+. +..+.++..+|.++...| +|++|+.+|+++++++|+++.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 4568899999999999999999999999763 345788889998887754 699999999999999999999
Q ss_pred HHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214 74 GLIRQIKCNIA---LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA 150 (470)
Q Consensus 74 ~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 150 (470)
++..++.++.. .++.++|++.++++++++|+++.++..++..+... ....+++++|+..+++++..+|.
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~--------~~~~~~~~~a~~~~~~al~~~~~ 245 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM--------REEGEEEGEGEKLVEEALEKAPG 245 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC--------C------CHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH--------HhhhhHHHHHHHHHHHHHHhCcc
Confidence 99999988654 57788999999999999999999887766543221 23457888999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc-------------------CChHHHHHHHHH
Q psy16214 151 SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-------------------DKMDLAVNHFQL 211 (470)
Q Consensus 151 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~ 211 (470)
...++..+|.++...|++++|+..++++++.+|+++.++..+|.+|... +.+++|+..+++
T Consensus 246 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988543 346789999999
Q ss_pred HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHH-HHHcCCHHHHH
Q psy16214 212 LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV-LFKMGKYNEAI 290 (470)
Q Consensus 212 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~-~~~~g~~~~A~ 290 (470)
++..+|.+..++..+ |.++...|++++|+.+|++++.+.|++.. ...++..+|.+ +...|++++|+
T Consensus 326 a~~~~~~~~~~~~~l------------g~~~~~~~~~~~A~~~~~kaL~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 326 ADEANDNLFRVCSIL------------ASLHALADQYEEAEYYFQKEFSKELTPVA-KQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHCTTTCCCHHHH------------HHHHHHTTCHHHHHHHHHHHHHSCCCHHH-HHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HhhcCCchhhhhhhH------------HHHHHHhccHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999988888 99999999999999999999999877543 23456666654 45789999999
Q ss_pred HHHHHHHHhC------------------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHH
Q psy16214 291 ADCTLALEKD------------------------PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNF 342 (470)
Q Consensus 291 ~~~~~al~~~------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~ 342 (470)
..|++++++. |+++.++..+|.+|..+|++++|+++|++|+++.|. +.....
T Consensus 393 ~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999988764 566778999999999999999999999999999886 444433
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=7e-32 Score=253.71 Aligned_cols=280 Identities=14% Similarity=0.066 Sum_probs=231.7
Q ss_pred HHHHHHhhcCCchh----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214 25 KCYSEAISVCPNVA----AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE 100 (470)
Q Consensus 25 ~~~~~al~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 100 (470)
..+..++...+.++ ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44555555544443 44888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCCHHH
Q psy16214 101 LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLM----------KAECLAHLNRLQE 170 (470)
Q Consensus 101 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~----------~a~~~~~~~~~~~ 170 (470)
++|++..++..++.+ +...|++++|+..+++++...|.....+.. +|.++...|++++
T Consensus 128 ~~p~~~~~~~~l~~~------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 128 LQPNNLKALMALAVS------------YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HCTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHH
T ss_pred cCCCCHHHHHHHHHH------------HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHH
Confidence 888888877666655 566788888888888888888776555544 4899999999999
Q ss_pred HHHHHHHHhhcCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214 171 AQEIANSILATDKQ--NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248 (470)
Q Consensus 171 A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (470)
|+..+++++...|. ++.++..+|.++...|++++|+..++++++..|++..++..+ |.++...|++
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~g~~ 263 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL------------GATLANGDRS 263 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCH
Confidence 99999999999999 899999999999999999999999999999999999988888 9999999999
Q ss_pred HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHH
Q psy16214 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN------------YLKALSRRCKCFHA 316 (470)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~ 316 (470)
++|+..|++++...|+ ...++.++|.++..+|++++|+..+++++++.|+ +..+|..++.++..
T Consensus 264 ~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPG----FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp HHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999998 4677999999999999999999999999999877 36789999999999
Q ss_pred hCCHHHHHHHHHHHHh
Q psy16214 317 LGQYKECVIDAEKIYK 332 (470)
Q Consensus 317 ~g~~~~A~~~~~~a~~ 332 (470)
+|+.+.|....++.+.
T Consensus 340 ~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 340 MDQPELFQAANLGDLD 355 (365)
T ss_dssp HTCHHHHHHHHTTCCG
T ss_pred cCcHHHHHHHHHhhHH
Confidence 9999988877776443
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=1.1e-31 Score=252.28 Aligned_cols=281 Identities=15% Similarity=0.080 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+..++.+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA--SKTYKLMKAEC 161 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~ 161 (470)
.+|++++|+..+++++++.|++...+..++..... ....+..+...|++++|+..+++++...|. ++.++..+|.+
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGL--TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC---------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHH--HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999999999877766544211000 122345577889999999999999999999 89999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE 241 (470)
Q Consensus 162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 241 (470)
+...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++.+|++..++..+ |.+
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------~~~ 290 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL------------GIS 290 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH------------HHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888 999
Q ss_pred HHhcCCHHHHHHHHHHHHhhcccCcc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16214 242 KFVAGKNQEAFDIYTEALKIDARNIN--------INSKLLHNRATVLFKMGKYNEAIADCTLALE 298 (470)
Q Consensus 242 ~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (470)
+...|++++|+..|++++.+.|+... ....+|..++.++..+|+.+.+.....+.+.
T Consensus 291 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999999999999999999987432 1357899999999999999998887766443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=4e-31 Score=248.69 Aligned_cols=284 Identities=12% Similarity=0.070 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMA---KNFEGASKAFEANDYRTAMFYLDRAMDQGVA--SKTYKLMK 158 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~ 158 (470)
..|++++|+..+++++.+.|.+...+..++.+.... ........++..|++++|+..+++++...|. .+.++..+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 999999999999999999999887664321110000 0000111123678899999999999999999 89999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238 (470)
Q Consensus 159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 238 (470)
|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|++..++..+
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l------------ 291 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL------------ 291 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNI-------NINSKLLHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
|.++...|++++|+..|++++.+.|++. .....+|..+|.++..+|++++|...+.++++.
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9999999999999999999999999851 112678999999999999999999998877654
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.98 E-value=7.4e-31 Score=245.23 Aligned_cols=259 Identities=14% Similarity=0.057 Sum_probs=231.3
Q ss_pred HhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCChHH
Q psy16214 30 AISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD-APTARSNLKALQELDPDNPAI 108 (470)
Q Consensus 30 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~ 108 (470)
+|..+|+++.++..+|.++...|++++|+..++++++++|++..+|..+|.++..+|+ +++|+..|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4567888899999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHH
Q psy16214 109 AQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDA 188 (470)
Q Consensus 109 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 188 (470)
|..++.+ +...|++++|+..+++++.++|++..+|..+|.++...|++++|+..++++++++|.+..+
T Consensus 169 ~~~~g~~------------~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a 236 (382)
T 2h6f_A 169 WHHRRVL------------VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSV 236 (382)
T ss_dssp HHHHHHH------------HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHH------------HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Confidence 9888777 4556889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-cCChHHH-----HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q psy16214 189 VFVRGLCLYY-DDKMDLA-----VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG--KNQEAFDIYTEALK 260 (470)
Q Consensus 189 ~~~la~~~~~-~g~~~~A-----~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~ 260 (470)
|+.+|.++.. .|..++| +.+|++++.++|++..++..+ +.++...| ++++|++.+.++ +
T Consensus 237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l------------~~ll~~~g~~~~~~a~~~~~~~-~ 303 (382)
T 2h6f_A 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYL------------KGILQDRGLSKYPNLLNQLLDL-Q 303 (382)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHTTTCGGGCHHHHHHHHHH-T
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHccCccchHHHHHHHHHh-c
Confidence 9999999999 5655888 588999999999999998888 88888877 688999988887 7
Q ss_pred hcccCccchHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHh
Q psy16214 261 IDARNININSKLLHNRATVLFKMG---------KYNEAIADCTLA-LEKDPNYLKALSRRCKCFHAL 317 (470)
Q Consensus 261 ~~p~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~ 317 (470)
.+|+ ...++..+|.++..+| .+++|+.+|+++ ++++|.....|..++.++...
T Consensus 304 ~~p~----~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 304 PSHS----SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TTCC----CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred cCCC----CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 7777 4567888999998874 258899999999 899999999998888877654
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.98 E-value=7.4e-31 Score=242.43 Aligned_cols=287 Identities=12% Similarity=0.038 Sum_probs=249.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.++.++.+|..++..|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH-HHHHH-HH-HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMA-KNFEG-AS-KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA 159 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-~~~~~-a~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 159 (470)
...|++++|+..+++++...|.+...+..+....... ..... +. .+...|++++|+..+++++...|.+..++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 9999999999999999999999887765552211000 00011 11 256678899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|++..++..+ |
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l------------~ 247 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM------------A 247 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------H
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH------------H
Confidence 9999999999999999999999999999999999999999999999999999999999999888887 9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNINI--------NSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (470)
.++...|++++|+..+++++...|.+... ...++..+|.++..+|++++|...++++++..|
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998883111 356788888888888998888888887776544
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.98 E-value=1e-30 Score=241.52 Aligned_cols=271 Identities=14% Similarity=0.086 Sum_probs=250.1
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214 37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116 (470)
Q Consensus 37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 116 (470)
++..++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..++.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~- 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS- 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH-
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999887666655
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHhhc
Q psy16214 117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK--------------AE-CLAHLNRLQEAQEIANSILAT 181 (470)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~--------------a~-~~~~~~~~~~A~~~~~~~l~~ 181 (470)
+...|++++|+..+++++...|.....+..+ +. ++...|++++|+..+++++..
T Consensus 99 -----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 167 (327)
T 3cv0_A 99 -----------HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167 (327)
T ss_dssp -----------HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence 6778999999999999999999988877766 66 688899999999999999999
Q ss_pred CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy16214 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI 261 (470)
Q Consensus 182 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 261 (470)
.|.++.++..+|.++...|++++|+..+++++...|++..++..+ |.++...|++++|+..+++++..
T Consensus 168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL------------GATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999888887 99999999999999999999999
Q ss_pred cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16214 262 DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN------------YLKALSRRCKCFHALGQYKECVIDAEK 329 (470)
Q Consensus 262 ~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 329 (470)
.|+ ...++..+|.++..+|++++|+..+++++...|+ ++.++..+|.++..+|++++|...+++
T Consensus 236 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 236 NPG----YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred CCC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 998 4567999999999999999999999999999999 799999999999999999999999998
Q ss_pred HHhcCC
Q psy16214 330 IYKMDN 335 (470)
Q Consensus 330 a~~~~p 335 (470)
+++..|
T Consensus 312 ~l~~~~ 317 (327)
T 3cv0_A 312 NVEPFA 317 (327)
T ss_dssp CSHHHH
T ss_pred HHHhcc
Confidence 887765
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=8e-30 Score=238.25 Aligned_cols=252 Identities=10% Similarity=-0.030 Sum_probs=233.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGM-YTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
.++.+..+|.++...|++++|+..|+++|.++|++..+|+++|.++..+|+ +++|+..|+++++++|++..+|+.+|.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC 161 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 161 (470)
+..+|++++|+..|+++++++|++..+|..++.+ +...|++++|+..++++++++|.+..+|..+|.+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~------------~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV------------IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 243 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHH------------HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999888877 5566899999999999999999999999999999
Q ss_pred HHH-cCCHHHH-----HHHHHHHhhcCCCChHHHHHHHHHHhccC--ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Q psy16214 162 LAH-LNRLQEA-----QEIANSILATDKQNPDAVFVRGLCLYYDD--KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLK 233 (470)
Q Consensus 162 ~~~-~~~~~~A-----~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 233 (470)
+.. .|.+++| +.++.+++.++|++..+|+.++.++...| ++++|+..++++ +.+|++..++..+
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~L------- 315 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFL------- 315 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHH-------
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHH-------
Confidence 999 5655777 59999999999999999999999999988 699999999998 9999999998888
Q ss_pred HHHHHHHHHHhcC---------CHHHHHHHHHHH-HhhcccCccchHHHHHHHHHHHHHc
Q psy16214 234 AKKEEGNEKFVAG---------KNQEAFDIYTEA-LKIDARNININSKLLHNRATVLFKM 283 (470)
Q Consensus 234 ~~~~~~~~~~~~~---------~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~la~~~~~~ 283 (470)
|.++...+ .+++|+++|+++ ++++|. ....|..++.++..+
T Consensus 316 -----a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~----r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 316 -----VDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI----RKEYWRYIGRSLQSK 366 (382)
T ss_dssp -----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHH
Confidence 88888874 359999999999 999998 566788888877654
No 25
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.97 E-value=3.7e-28 Score=218.34 Aligned_cols=257 Identities=16% Similarity=0.102 Sum_probs=202.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF----SKGLIRQ 78 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 78 (470)
+++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4566778888888888888888888888888888888888888888888888888888888887 3332 4457778
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214 79 IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK 158 (470)
Q Consensus 79 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 158 (470)
|.++..+|++++|+..|+++++.+|.++ .++..+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------------------------------------~~~~~l 114 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRL----------------------------------------------DMYGQI 114 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCT----------------------------------------------HHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccH----------------------------------------------HHHHHH
Confidence 8888888877777777777776665544 456678
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238 (470)
Q Consensus 159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 238 (470)
|.++...|++++|+..+++++..+|.++.+++.+|...+..+++++|+..++++++.+|++..++..+
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~------------ 182 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR------------ 182 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------
T ss_pred HHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHH------------
Confidence 88889999999999999999999999999999999444455699999999999999999988887777
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHhhcccCcc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 239 GNEKFVAGK---NQEAFDIYTEALKIDARNIN----INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRC 311 (470)
Q Consensus 239 ~~~~~~~~~---~~~A~~~~~~al~~~p~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 311 (470)
|.++...++ +++|+..|+++++.....+. ....++..+|.++...|++++|+.+++++++++|+++.++-.++
T Consensus 183 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 888888888 88899999999987633222 12478899999999999999999999999999999999998888
Q ss_pred HHHHHhC
Q psy16214 312 KCFHALG 318 (470)
Q Consensus 312 ~~~~~~g 318 (470)
.+....+
T Consensus 263 ~~~~~~~ 269 (272)
T 3u4t_A 263 MKLEHHH 269 (272)
T ss_dssp -------
T ss_pred hhhcccc
Confidence 7765543
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.4e-28 Score=214.74 Aligned_cols=228 Identities=16% Similarity=0.141 Sum_probs=173.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-------SKG 74 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 74 (470)
..++.++.+|..++..|+|++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++++|+. +.+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 357889999999999999999999999999999 889999999999999999999999999999998876 789
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214 75 LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTY 154 (470)
Q Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 154 (470)
+..+|.++..+|++++|+..+++++.+.|.. . .+...+++++|+..+++++..+|....+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~-------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 141 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-D-------------------ILTKLRNAEKELKKAEAEAYVNPEKAEE 141 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-H-------------------HHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCchh-H-------------------HHHHHhHHHHHHHHHHHHHHcCcchHHH
Confidence 9999999999999999999999999988761 1 1233345566666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Q psy16214 155 KLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA 234 (470)
Q Consensus 155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 234 (470)
+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|++..++..+
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l-------- 213 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK-------- 213 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH--------
Confidence 666666666666666666666666666666666666666666666666666666666666666665555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214 235 KKEEGNEKFVAGKNQEAFDIYTEALKID 262 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~ 262 (470)
|.++...|++++|+..+++++++.
T Consensus 214 ----~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 214 ----ATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp ----HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhhHHHHHHHHHHHHHhC
Confidence 666666666666666666666655
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=7.8e-28 Score=216.21 Aligned_cols=217 Identities=16% Similarity=0.068 Sum_probs=178.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQ 78 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 78 (470)
.+..+..+|.+++..|++++|+..|++++. .|.+ +.++..+|.++...|++++|+..++++++.+|.++.++..+
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 114 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI 114 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 456789999999999999999999999999 4444 34599999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214 79 IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK 158 (470)
Q Consensus 79 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 158 (470)
|.++..+|++++|+..++++++++|.++.++ ..+
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------------------------------------------~~l 148 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVF----------------------------------------------YEL 148 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCSSCCCHHHH----------------------------------------------HHH
T ss_pred HHHHHHccCHHHHHHHHHHHhhcCCCcHHHH----------------------------------------------HHH
Confidence 9999999999999999999999888776654 334
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC---hHHHHHHHHHHHhhC---CChH-----HHHHHHH
Q psy16214 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK---MDLAVNHFQLLLKLA---PDHA-----KAKETYK 227 (470)
Q Consensus 159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~---p~~~-----~~~~~~~ 227 (470)
|......+++++|+..++++++..|+++.++..+|.++...++ +++|+..++++++.. |+.. .++..+
T Consensus 149 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 227 (272)
T 3u4t_A 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI- 227 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-
Confidence 5233334488888888888888888888888888988888888 888999999998876 4321 233333
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH
Q psy16214 228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK 282 (470)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~ 282 (470)
|.++...|++++|+.+|+++++++|+++ .++..++.+...
T Consensus 228 -----------~~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~l~~~~~~ 267 (272)
T 3u4t_A 228 -----------AYYYTINRDKVKADAAWKNILALDPTNK----KAIDGLKMKLEH 267 (272)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHC-----
T ss_pred -----------HHHHHHcCCHHHHHHHHHHHHhcCccHH----HHHHHhhhhhcc
Confidence 9999999999999999999999999954 456666555443
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=4.9e-27 Score=212.43 Aligned_cols=258 Identities=16% Similarity=0.095 Sum_probs=187.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q psy16214 12 NTQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPT 90 (470)
Q Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 90 (470)
..++..|+|.+|+..++++...+|++ ......++.+|+.+|+++.|+..++. .+|....++..++..+...++.++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 45677888888888888887777776 45677778888888888888877755 255566677777888888888888
Q ss_pred HHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy16214 91 ARSNLKALQEL--DPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL 168 (470)
Q Consensus 91 A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 168 (470)
|++.+++++.. +|+++ .++..+|.++...|++
T Consensus 84 A~~~l~~ll~~~~~P~~~----------------------------------------------~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNT----------------------------------------------TFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHHHHHHSCCCCSCH----------------------------------------------HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcccCCCCH----------------------------------------------HHHHHHHHHHHHCCCH
Confidence 88777776653 35544 4555667777777777
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248 (470)
Q Consensus 169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (470)
++|+..+++ |.+++++..+|.++..+|++++|+..++++++.+|++........ ....+...|++
T Consensus 118 ~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a----------~~~l~~~~~~~ 182 (291)
T 3mkr_A 118 DAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA----------WVSLAAGGEKL 182 (291)
T ss_dssp HHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH----------HHHHHHCTTHH
T ss_pred HHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH----------HHHHHhCchHH
Confidence 777777776 677777777777777777777777777777777777653332210 02333445778
Q ss_pred HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH-HHHHH
Q psy16214 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE-CVIDA 327 (470)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~ 327 (470)
++|+.+|++++...|+ .+.++.++|.++..+|++++|+..+++++.++|+++.++.++|.++..+|++.+ +..++
T Consensus 183 ~eA~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 183 QDAYYIFQEMADKCSP----TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp HHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 8888888888877777 345677788888888888888888888888888888888888888888887765 45777
Q ss_pred HHHHhcCCCh
Q psy16214 328 EKIYKMDNSR 337 (470)
Q Consensus 328 ~~a~~~~p~~ 337 (470)
+++++++|+.
T Consensus 259 ~~~~~~~P~~ 268 (291)
T 3mkr_A 259 SQLKDAHRSH 268 (291)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHHhCCCC
Confidence 7888888873
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=8.5e-28 Score=208.08 Aligned_cols=199 Identities=21% Similarity=0.197 Sum_probs=177.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
.+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|+++.++..+|.+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHc-----------CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214 82 NIAL-----------GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA 150 (470)
Q Consensus 82 ~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 150 (470)
+..+ |++++|+..|+++++++|+++.++..++.+ +...|++++|+..++++++.+ +
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~------------~~~~g~~~~A~~~~~~al~~~-~ 149 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV------------YALLGERDKAEASLKQALALE-D 149 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHHC-C
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHH------------HHHcCChHHHHHHHHHHHhcc-c
Confidence 9999 999999999999999999999998777666 777899999999999999999 9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy16214 151 SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLL 213 (470)
Q Consensus 151 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 213 (470)
++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++-
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998764
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=6.3e-27 Score=211.73 Aligned_cols=236 Identities=14% Similarity=0.082 Sum_probs=191.0
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q psy16214 46 ACYMMLGMYTYALDDAKLAVSLDPRF-SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEG 124 (470)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 124 (470)
.-.+..|+|..|+..++++...+|++ .++...++++|+.+|+++.|+..++.. +
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~---------------------- 61 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S---------------------- 61 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S----------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C----------------------
Confidence 34566788888888887777777765 356677788888888888877655431 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCChHHHHHHHHHHhccCCh
Q psy16214 125 ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT--DKQNPDAVFVRGLCLYYDDKM 202 (470)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~ 202 (470)
|....++..++..+...+++++|++.+++++.. +|+++.+++.+|.++...|++
T Consensus 62 ------------------------~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 62 ------------------------APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp ------------------------CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred ------------------------ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 222345566888899999999999999999875 699999999999999999999
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHH--HHH
Q psy16214 203 DLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRA--TVL 280 (470)
Q Consensus 203 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la--~~~ 280 (470)
++|+..+++ |++..++..+ |.++...|++++|+..+++++..+|++. ......+ .++
T Consensus 118 ~~Al~~l~~-----~~~~~~~~~l------------~~~~~~~g~~~~A~~~l~~~~~~~p~~~----~~~l~~a~~~l~ 176 (291)
T 3mkr_A 118 DAALRTLHQ-----GDSLECMAMT------------VQILLKLDRLDLARKELKKMQDQDEDAT----LTQLATAWVSLA 176 (291)
T ss_dssp HHHHHHHTT-----CCSHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHH
T ss_pred HHHHHHHhC-----CCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHhhCcCcH----HHHHHHHHHHHH
Confidence 999999988 8888888887 9999999999999999999999998853 1222222 333
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhh
Q psy16214 281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLK 351 (470)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~ 351 (470)
...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+ .++...+..+.....
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45589999999999999999999999999999999999999999999999999997 566555554444443
No 31
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=235.18 Aligned_cols=303 Identities=15% Similarity=0.064 Sum_probs=247.8
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCC
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----AAYYGNRAACYMMLGMYTYALDDAKLAVSL------DPRF 71 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~ 71 (470)
..+..++.+|..++..|++++|+.+|++++...|.+ ..++..+|.++...|++++|+..+++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 456788999999999999999999999999999987 468999999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChH------HHHHHHHHHHHHHHHHHHHHHHhcCC------------
Q psy16214 72 SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA------IAQESKALETMAKNFEGASKAFEAND------------ 133 (470)
Q Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~------------ 133 (470)
..++..+|.++..+|++++|+..+++++.+.|.... ++..++.+ +...|+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~------------~~~~g~~~~~~~~~~~~~ 154 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV------------YHAKGKSFGCPGPQDVGE 154 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------HHHHHHTCC-------CC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH------------HHHcCCcccccccchhhh
Confidence 778999999999999999999999999998765422 44444444 444455
Q ss_pred --------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH------HHHHHH
Q psy16214 134 --------YRTAMFYLDRAMDQ------GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD------AVFVRG 193 (470)
Q Consensus 134 --------~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la 193 (470)
+++|+..+.+++.. .|....++..+|.++...|++++|+..+++++...|.... ++..+|
T Consensus 155 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 234 (406)
T 3sf4_A 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 77777788777766 3344567889999999999999999999999988765544 899999
Q ss_pred HHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC--ccchHH
Q psy16214 194 LCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN--ININSK 271 (470)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~ 271 (470)
.++...|++++|+.++++++...|....... ....+...|.++...|++++|+.++++++.+.+.. ......
T Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 235 NAYIFLGEFETASEYYKKTLLLARQLKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCcCchH------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 9999999999999999999987665421111 11122233999999999999999999999886653 222467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhCCHHH
Q psy16214 272 LLHNRATVLFKMGKYNEAIADCTLALEKDP------NYLKALSRRCKCFHALGQYKE 322 (470)
Q Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~ 322 (470)
++..+|.++..+|++++|+.++++++++.+ ....++..+|.++..+|+...
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 889999999999999999999999998843 337788999999999998744
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-27 Score=211.21 Aligned_cols=246 Identities=21% Similarity=0.228 Sum_probs=204.8
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
+.+..+..+|.+++..|++++|+..++++++.+ .++.++..+|.++..+|++++|+..+.+++++.|++...+.
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----- 76 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK----- 76 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-----
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-----
Confidence 457889999999999999999999999999999 89999999999999999999999999999998776531110
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214 116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC 195 (470)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 195 (470)
..+.++..+|.++...|++++|+..+++++...|. +.+
T Consensus 77 ----------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~ 114 (258)
T 3uq3_A 77 ----------------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADI 114 (258)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHH
Confidence 01345566788888888888888888888887776 456
Q ss_pred HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHH
Q psy16214 196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN 275 (470)
Q Consensus 196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 275 (470)
+...|++++|+..+++++..+|.+..++..+ |.++...|++++|+..+++++...|.+ ..++..
T Consensus 115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~ 178 (258)
T 3uq3_A 115 LTKLRNAEKELKKAEAEAYVNPEKAEEARLE------------GKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSN 178 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCcchHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhcCccc----HHHHHH
Confidence 6677788888888888888888888887777 888888888888888888888888884 466888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CC-hhHHHHHHH
Q psy16214 276 RATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD------NS-RENHNFLEE 345 (470)
Q Consensus 276 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~-~~~~~~l~~ 345 (470)
+|.++..+|++++|+..++++++.+|+++.++..+|.++..+|++++|+..|+++++++ |+ .++...+.+
T Consensus 179 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 89999999999999999999998889888889999999999999999999999998888 65 444444443
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=2e-27 Score=205.74 Aligned_cols=211 Identities=17% Similarity=0.102 Sum_probs=178.5
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy16214 35 PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA 114 (470)
Q Consensus 35 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 114 (470)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++++++|+++.++..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy16214 115 LETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL 194 (470)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 194 (470)
++...+... .......|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.+++.+|.
T Consensus 82 ~~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQA-EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred HHHHhhhhh-hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence 855441100 0011122788999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL 259 (470)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 259 (470)
++...|++++|+..|+++++.+|+++.++..+ |.++...|++++|+..|+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRY------------ASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999888 999999999999999998764
No 34
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=1.2e-24 Score=214.58 Aligned_cols=315 Identities=11% Similarity=0.019 Sum_probs=251.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH-H
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIK-C 81 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~ 81 (470)
++..|..++.. ...|++++|...|++++..+|.++.+|..++..+...|++++|...|++++...| +...|..++. +
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 56788888884 7889999999999999999999999999999999999999999999999999999 5656655542 1
Q ss_pred HHH--------------------------------------------------cCChHHHHHHHHHHHhcCCCCh--HHH
Q psy16214 82 NIA--------------------------------------------------LGDAPTARSNLKALQELDPDNP--AIA 109 (470)
Q Consensus 82 ~~~--------------------------------------------------~g~~~~A~~~~~~~l~~~p~~~--~~~ 109 (470)
... .|+++.|..+|+++++ .|.+. ..+
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~ 168 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLW 168 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHH
Confidence 111 3556667777777777 45432 222
Q ss_pred HHHHHHHH-------------HHHHHHHHHHHH--------------------------------------hc------C
Q psy16214 110 QESKALET-------------MAKNFEGASKAF--------------------------------------EA------N 132 (470)
Q Consensus 110 ~~l~~~~~-------------~~~~~~~a~~~~--------------------------------------~~------~ 132 (470)
........ ..+.+..|...+ .. +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 22211110 111222222110 00 1
Q ss_pred C----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHhh-cCCCChHHHHHHH
Q psy16214 133 D----YRTAMFYLDRAMDQGVASKTYKLMKAECLAH-------LNRLQ-------EAQEIANSILA-TDKQNPDAVFVRG 193 (470)
Q Consensus 133 ~----~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~~l~-~~p~~~~~~~~la 193 (470)
+ ..+++..|++++..+|.++.+|..+|.++.. .|+++ +|+..++++++ ..|++..+|..++
T Consensus 249 ~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 1 1367789999999999999999999999986 79977 99999999997 7999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHH
Q psy16214 194 LCLYYDDKMDLAVNHFQLLLKLAPDHA-KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKL 272 (470)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 272 (470)
.++...|++++|...|+++++..|.++ .++..+ +..+...|++++|...|+++++..|.. ..+
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~Al~~~~~~----~~~ 392 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY------------MKFARRAEGIKSGRMIFKKAREDARTR----HHV 392 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHTCTTCC----THH
T ss_pred HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhccCCc----hHH
Confidence 999999999999999999999999875 577776 888888999999999999999988764 334
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 273 LHNRATV-LFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 273 ~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.++|...|++++...|.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 5555554 346899999999999999999999999999999999999999999999999998764
No 35
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=4.9e-27 Score=224.23 Aligned_cols=287 Identities=15% Similarity=0.122 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh----HHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA----AYYGNRAACYMMLGMYTYALDDAKLAVSL------DPRFSK 73 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 73 (470)
+..++.+|..++..|++++|+.+|++++...|+++ .++..+|.++...|++++|+..+++++++ .|....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34566777777777777777777777777777664 46777777777777777777777777766 455566
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214 74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT 153 (470)
Q Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 153 (470)
++..+|.++..+|++++|+.++++++.+.+... ..|....
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------------------~~~~~~~ 167 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLG----------------------------------------DRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh----------------------------------------chHHHHH
Confidence 777777777777777777777777665321100 0222345
Q ss_pred HHHHHHHHHHHcCC-----------------HHHHHHHHHHHhhcC------CCChHHHHHHHHHHhccCChHHHHHHHH
Q psy16214 154 YKLMKAECLAHLNR-----------------LQEAQEIANSILATD------KQNPDAVFVRGLCLYYDDKMDLAVNHFQ 210 (470)
Q Consensus 154 ~~~~~a~~~~~~~~-----------------~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 210 (470)
++..+|.++...|+ +++|+..+++++... +....++..+|.++...|++++|+.+++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 66778888888888 888888888877653 2334588999999999999999999999
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc--chHHHHHHHHHHHHHcCCHHH
Q psy16214 211 LLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN--INSKLLHNRATVLFKMGKYNE 288 (470)
Q Consensus 211 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~la~~~~~~g~~~~ 288 (470)
+++.+.|....... ....+...|.++...|++++|+.++++++...+.... ....++..+|.++..+|++++
T Consensus 248 ~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (411)
T 4a1s_A 248 ERLRIAREFGDRAA------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT 321 (411)
T ss_dssp HHHHHHHHHTCHHH------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCCcHH------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99988765443111 0112233399999999999999999999988775322 246789999999999999999
Q ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 289 AIADCTLALEKDPNY------LKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 289 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
|+.++++++.+.+.. ..++..+|.++..+|++++|+.++++++++.+.
T Consensus 322 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 322 AIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999999885432 568999999999999999999999999999976
No 36
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.95 E-value=5.3e-27 Score=217.08 Aligned_cols=288 Identities=16% Similarity=0.112 Sum_probs=228.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----AAYYGNRAACYMMLGMYTYALDDAKLAVSL------DPRFS 72 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~ 72 (470)
+...++..|..++..|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..+++++.+ .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 45678899999999999999999999999999987 478889999999999999999999999887 44557
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q psy16214 73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK 152 (470)
Q Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 152 (470)
.++..+|.++...|++++|+..+++++++.|...... ...
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------------------~~~ 123 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV----------------------------------------GEA 123 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------------------------------------HHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch----------------------------------------HHH
Confidence 7899999999999999999999999987654332210 012
Q ss_pred HHHHHHHHHHHHcCC--------------------HHHHHHHHHHHhhc------CCCChHHHHHHHHHHhccCChHHHH
Q psy16214 153 TYKLMKAECLAHLNR--------------------LQEAQEIANSILAT------DKQNPDAVFVRGLCLYYDDKMDLAV 206 (470)
Q Consensus 153 ~~~~~~a~~~~~~~~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~ 206 (470)
.++..+|.++...|+ +++|+..+++++.. .+....++..+|.++...|++++|+
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 345556777777777 77777777777654 2233557888999999999999999
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC--ccchHHHHHHHHHHHHHcC
Q psy16214 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN--ININSKLLHNRATVLFKMG 284 (470)
Q Consensus 207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~la~~~~~~g 284 (470)
..+++++...+....... ....+...|.++...|++++|+.++++++...+.. +.....++..+|.++..+|
T Consensus 204 ~~~~~a~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAA------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp HHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCChHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 999999887654332110 01122333999999999999999999999886653 2223678899999999999
Q ss_pred CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 285 KYNEAIADCTLALEKDPNY------LKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 285 ~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++++|+.++++++.+.|.. ..++..+|.++..+|++++|..++++++++.++
T Consensus 278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9999999999999885543 568899999999999999999999999998764
No 37
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=219.61 Aligned_cols=289 Identities=13% Similarity=0.026 Sum_probs=236.1
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214 36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS----KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE 111 (470)
Q Consensus 36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 111 (470)
.....+..+|.++...|++++|+..++++++..|.++ .++..+|.++...|++++|+.++++++.+.+..... ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ-LG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc-HH
Confidence 3567789999999999999999999999999999984 688999999999999999999999998763221110 00
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC------------------
Q psy16214 112 SKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVAS------KTYKLMKAECLAHLNR------------------ 167 (470)
Q Consensus 112 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~~~------------------ 167 (470)
... .....+..+...|++++|+..+.+++...|.. ..++..+|.++...|+
T Consensus 86 ~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 86 EAK-----ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp HHH-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred HHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 011 12344555788899999999999999886643 4588899999999999
Q ss_pred --HHHHHHHHHHHhhc------CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 168 --LQEAQEIANSILAT------DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 168 --~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
+++|+..+.+++.. .|....++..+|.++...|++++|+..+++++...|....... ....+...|
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la 234 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERRAYSNLG 234 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHH
Confidence 99999999999876 3334568999999999999999999999999987665433111 011223349
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNI--NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY------LKALSRRC 311 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la 311 (470)
.++...|++++|+.++++++.+.|... .....++..+|.++...|++++|+.++++++.+.+.. ..++..+|
T Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 314 (406)
T 3sf4_A 235 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG 314 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999999999999998876532 2236789999999999999999999999999985544 77899999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 312 KCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 312 ~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.++..+|++++|+.++++++++.+.
T Consensus 315 ~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.95 E-value=4.6e-26 Score=204.84 Aligned_cols=252 Identities=14% Similarity=0.029 Sum_probs=193.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhc----CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214 13 TQYKLKQYSKALKCYSEAISV----CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA 88 (470)
Q Consensus 13 ~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 88 (470)
.....|++++|+..|+++++. +|.++.+++.+|.++...|++++|+..|+++++++|.++.++..+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 344567889999999999887 3456888889999999999999999999999999998888999999999888888
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy16214 89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL 168 (470)
Q Consensus 89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 168 (470)
++|+.+|+++++++|+++. ++..+|.++...|++
T Consensus 94 ~~A~~~~~~al~~~~~~~~----------------------------------------------~~~~la~~~~~~g~~ 127 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNY----------------------------------------------AHLNRGIALYYGGRD 127 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTH----------------------------------------------HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcCccccH----------------------------------------------HHHHHHHHHHHhccH
Confidence 8888888888877766554 445566677777777
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248 (470)
Q Consensus 169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (470)
++|+..++++++..|+++......+.+ ...|++++|+..+++++...|.+...+. + +..+...++.
T Consensus 128 ~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~ 193 (275)
T 1xnf_A 128 KLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-I------------VEFYLGNISE 193 (275)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-H------------HHHHTTSSCH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-H------------HHHHHHhcCH
Confidence 777777777777777776655555543 4557888888888888887777655543 2 6667777888
Q ss_pred HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16214 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDA 327 (470)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 327 (470)
++|+..+++++...|........++..+|.++..+|++++|+..+++++.++|++... .+.++..+|++++|+..|
T Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 8888888888877765433246778889999999999999999999999998877443 377888888998888877
No 39
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=1.1e-22 Score=198.52 Aligned_cols=303 Identities=14% Similarity=-0.002 Sum_probs=248.3
Q ss_pred cHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHH
Q psy16214 3 SAEKHKEDGNTQYK----LKQYSKALKCYSEAISVCPNVAAYYGNRAACYMM----LGMYTYALDDAKLAVSLDPRFSKG 74 (470)
Q Consensus 3 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 74 (470)
+++.++.+|..++. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+..|+++++. .++.+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 57889999999999 89999999999999986 578999999999999 99999999999999875 58899
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214 75 LIRQIKCNIA----LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA 150 (470)
Q Consensus 75 ~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 150 (470)
++.+|.+|.. .+++++|+.+|+++.+. .++.++..++.++..- .-..+++++|+.+++++++. .
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g--------~g~~~d~~~A~~~~~~a~~~--~ 181 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEG--------DGVTRDYVMAREWYSKAAEQ--G 181 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT--------SSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC--------CCCCCCHHHHHHHHHHHHHC--C
Confidence 9999999999 89999999999999875 5778877777763210 00167889999999998876 5
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHhhCCChHHH
Q psy16214 151 SKTYKLMKAECLAH----LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY----DDKMDLAVNHFQLLLKLAPDHAKA 222 (470)
Q Consensus 151 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~ 222 (470)
++.++..+|.+|.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++++. .++.+
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 257 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIA 257 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHH
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 78888899999988 88999999999998875 467888999999886 78899999999998875 34555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc-----CCHHHHHHHH
Q psy16214 223 KETYKRAKLLKAKKEEGNEKFV----AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM-----GKYNEAIADC 293 (470)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~ 293 (470)
...+ |.++.. .+++++|+.+|+++++.. .+.+++.+|.++... +++++|+.+|
T Consensus 258 ~~~l------------g~~y~~g~~~~~d~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 258 QFRL------------GYILEQGLAGAKEPLKALEWYRKSAEQG------NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHH------------HHHHHHTTTSSCCHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHH------------HHHHHCCCCCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 5555 788877 788999999999887653 245688888888887 8899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy16214 294 TLALEKDPNYLKALSRRCKCFHALG---QYKECVIDAEKIYKMDNSRENHNFLEEA 346 (470)
Q Consensus 294 ~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~~~~~~l~~~ 346 (470)
+++++. .++.+++.+|.+|...| ++++|+.+|+++++.. +.+....|..+
T Consensus 320 ~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~ 372 (490)
T 2xm6_A 320 TKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-EKAAQFNLGNA 372 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 988876 45788888998888866 7888999999988873 34444444433
No 40
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=1.2e-23 Score=205.54 Aligned_cols=302 Identities=13% Similarity=0.055 Sum_probs=223.4
Q ss_pred cHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHH
Q psy16214 3 SAEKHKEDGNTQYK----LKQYSKALKCYSEAISVCPNVAAYYGNRAACYMM----LGMYTYALDDAKLAVSLDPRFSKG 74 (470)
Q Consensus 3 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 74 (470)
.+.+++.+|..+.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+..|+++.+. .++.+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 149 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSG 149 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 46788999999999 99999999999999875 478889999999998 88999999999999875 57899
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----HHHHHHHHHH------------------
Q psy16214 75 LIRQIKCNIA----LGDAPTARSNLKALQELDPDNPAIAQESKALETM----AKNFEGASKA------------------ 128 (470)
Q Consensus 75 ~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~------------------ 128 (470)
++.+|.+|.. .+++++|+..|+++++. .++.++..++.++.. .+++..|..+
T Consensus 150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 227 (490)
T 2xm6_A 150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLAD 227 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999998 88999999999999875 578888888887654 3333333322
Q ss_pred --Hh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc
Q psy16214 129 --FE----ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH----LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY 198 (470)
Q Consensus 129 --~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 198 (470)
.. .+++++|+.+++++++. .++.++..+|.++.. .+++++|+.+|+++++. .++.+++.+|.++..
T Consensus 228 ~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 228 MYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Confidence 21 45667777777766654 445666667777766 66777777777776654 456667777777766
Q ss_pred c-----CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcccCccchH
Q psy16214 199 D-----DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG---KNQEAFDIYTEALKIDARNININS 270 (470)
Q Consensus 199 ~-----g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~ 270 (470)
. +++++|+..|+++++.. ++.++..+ |.++...| ++++|+.+|+++++. . .+
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l------------g~~y~~~g~~~~~~~A~~~~~~a~~~--~----~~ 363 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQG--DATAQANL------------GAIYFRLGSEEEHKKAVEWFRKAAAK--G----EK 363 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTT--CHHHHHHH------------HHHHHHSCCHHHHHHHHHHHHHHHHT--T----CH
T ss_pred CCCCCcCCHHHHHHHHHHHHhcC--CHHHHHHH------------HHHHHhCCCcccHHHHHHHHHHHHHC--C----CH
Confidence 5 67777777777776653 33444444 77776655 677777777777765 2 34
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCC
Q psy16214 271 KLLHNRATVLFK----MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 271 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~ 336 (470)
.+++++|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++..|+
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 567778888777 77788888888887775 357777888888877 77888888888888877754
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.94 E-value=1.5e-25 Score=197.59 Aligned_cols=212 Identities=17% Similarity=0.179 Sum_probs=184.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.+..++.+|..++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL 162 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 162 (470)
...|++++|+..++++++..|.++.++..++.+ ++..|++++|+..+++++...|.+..++..+|.++
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTV------------LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHH------------HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 999999999999999999999998887665555 77889999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|++..++..+
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888766
No 42
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.94 E-value=6.4e-26 Score=229.26 Aligned_cols=255 Identities=13% Similarity=0.077 Sum_probs=214.4
Q ss_pred HhcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC
Q psy16214 129 FEANDYRTAMFYLDRAM--------DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD 200 (470)
Q Consensus 129 ~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 200 (470)
+..+++++|+..+++++ ..+|++..++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 67899999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHH
Q psy16214 201 KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVL 280 (470)
Q Consensus 201 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~ 280 (470)
++++|+..|+++++++|++..++..+ |.++...|++++ +..|+++++++|+ ...+++++|.++
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~l------------g~~~~~~g~~~~-~~~~~~al~~~P~----~~~a~~~lg~~~ 544 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLAL------------AATAELAGNTDE-HKFYQTVWSTNDG----VISAAFGLARAR 544 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHH------------HHHHHHHTCCCT-TCHHHHHHHHCTT----CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHcCChHH-HHHHHHHHHhCCc----hHHHHHHHHHHH
Confidence 99999999999999999999999888 999999999999 9999999999999 456799999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhh
Q psy16214 281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ--------YKECVIDAEKIYKMDNS-RENHNFLEEAKRLLK 351 (470)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~ 351 (470)
..+|++++|+..|+++++++|++..+++++|.++...++ +++|...+.++....|. ......+..+...+.
T Consensus 545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~ll~~~l~~~ 624 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALVLGGALDWL 624 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987665 44444444433323333 333444445555556
Q ss_pred cccccchhhhccCCCCCCH--HHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhh
Q psy16214 352 RSEVKDYYKILGVTKNASS--DDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413 (470)
Q Consensus 352 ~~~~~~~y~~lg~~~~~~~--~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~ 413 (470)
.+...++|++||++..... .+|+++||++++.-.++ +..+.-+..|..|
T Consensus 625 ~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 625 KDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------------RHRYTLVDMANKV 675 (681)
T ss_dssp TSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------------HHHHHHHHHHHHH
T ss_pred HccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------------HHHHHHHHHhccc
Confidence 6667779999999777665 67999999999965544 3346666666544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=7.7e-24 Score=187.79 Aligned_cols=211 Identities=14% Similarity=0.048 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+..++.+|..++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQE--LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC 161 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 161 (470)
..|++++|+..+++++. ..|.+..++..++.+ ++..|++++|+..+++++...|.+..++..+|.+
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV------------SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL 184 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 99999999999999999 777777776555554 6778999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
+...|++++|+..+++++...|.+..++..++.++...|++++|+..++++++..|+++.....+
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998766543
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=2.8e-24 Score=180.99 Aligned_cols=171 Identities=16% Similarity=0.191 Sum_probs=164.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHH
Q psy16214 150 ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA 229 (470)
Q Consensus 150 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 229 (470)
+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL--- 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH---
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHH---
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16214 230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSR 309 (470)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 309 (470)
|.++...++++.|+..+.+++...|.+ ..++..+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 80 ---------~~~~~~~~~~~~a~~~~~~a~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 80 ---------GSANFMIDEKQAAIDALQRAIALNTVY----ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ---------HHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 999999999999999999999999994 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 310 RCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 310 la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+|.++..+|++++|+.+|+++++++|+
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999985
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=2.6e-24 Score=181.20 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=113.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
++..|+.+|.++...|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+.+.++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL 162 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 162 (470)
...++++.|...+.+++.+.| .+..++..+|.++
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~----------------------------------------------~~~~~~~~lg~~~ 117 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNT----------------------------------------------VYADAYYKLGLVY 117 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT----------------------------------------------TCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCc----------------------------------------------cchHHHHHHHHHH
Confidence 666666665555555555554 4455556667777
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH
Q psy16214 163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220 (470)
Q Consensus 163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 220 (470)
...|++++|+..|+++++.+|.++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 118 DSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 7777777777777777777777777777777777777777777777777777777653
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=2.4e-24 Score=189.77 Aligned_cols=220 Identities=15% Similarity=0.122 Sum_probs=141.6
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214 37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116 (470)
Q Consensus 37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 116 (470)
.+..++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|.+..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------- 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA-------- 93 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHH--------
Confidence 366788888888888888888888888888888888888888888888888888888888887777665544
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy16214 117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCL 196 (470)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 196 (470)
+..+|.++...|++++|+..++++++..|.++.++..+|.++
T Consensus 94 --------------------------------------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 94 --------------------------------------YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL 135 (243)
T ss_dssp --------------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 444566666666666666666666666666666666667777
Q ss_pred hccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHH
Q psy16214 197 YYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNR 276 (470)
Q Consensus 197 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~l 276 (470)
...|++++|+..+++++...|++..++..+ |.++...|++++|+..+++++...|.+ ..++..+
T Consensus 136 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l 199 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVELNENDTEARFQF------------GMCLANEGMLDEALSQFAAVTEQDPGH----ADAFYNA 199 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCCHHHHHHHHHHHHHCTTC----HHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHH
Confidence 667777777777777776666666666555 667777777777777777777776663 4457777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214 277 ATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318 (470)
Q Consensus 277 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 318 (470)
|.++...|++++|+..++++++++|+++.++..++.+....+
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 777777777777777777777777777777776666554433
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.93 E-value=2.3e-23 Score=181.11 Aligned_cols=213 Identities=11% Similarity=-0.001 Sum_probs=198.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
..+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHc-CChHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214 82 NIAL-GDAPTARSNLKALQE--LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK 158 (470)
Q Consensus 82 ~~~~-g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 158 (470)
+... |++++|+..++++++ ..|.+..++..++.+ +...|++++|+..++++++..|.+..++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 153 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC------------SAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL 153 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 9999 999999999999999 555556666555444 7788999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCC-CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 159 AECLAHLNRLQEAQEIANSILATDK-QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 159 a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
|.++...|++++|+..+++++...| .++..+..++.++...|+.++|..+++.+....|+++.+...+
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999999999999999999999 9999999999999999999999999999999999998876544
No 48
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=9.8e-24 Score=193.00 Aligned_cols=252 Identities=12% Similarity=0.009 Sum_probs=205.9
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHc
Q psy16214 21 SKALKCYSEAISVCPNVAAYYGNRAACYMM-------LGMY-------TYALDDAKLAVS-LDPRFSKGLIRQIKCNIAL 85 (470)
Q Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 85 (470)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 999999999999 7999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 86 GDAPTARSNLKALQELDPDNPA-IAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH 164 (470)
Q Consensus 86 g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 164 (470)
|++++|...|++++++.|.++. +|..++.+ +...|++++|+..|+++++..|....++...+.+...
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~------------~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF------------ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH------------HHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHH------------HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999886 77666665 4445778888888889999888888877766665443
Q ss_pred -cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhh---CCC-hHHHHHHHHHHHHHHHHHHHH
Q psy16214 165 -LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL---APD-HAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 165 -~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~-~~~~~~~~~~~~~~~~~~~~~ 239 (470)
.|++++|+.+|+++++.+|+++.+|..++.++...|++++|+..|++++.. .|+ ....+..+ +
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~------------~ 248 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF------------L 248 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH------------H
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH------------H
Confidence 689999999999999999999999999999888889999999999999885 453 56666666 7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK 312 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 312 (470)
......|++++|..+++++++..|++.... .++.+ ..-.+.+.++|+++.++..+|.
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~-----~~~~~-----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTAFREEYEGK-----ETALL-----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHTTTTTSSC-----HHHHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcccccccc-----hHHHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence 777888899999999999998888765431 01111 1111556678888888776653
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=9.7e-23 Score=183.08 Aligned_cols=229 Identities=12% Similarity=-0.016 Sum_probs=147.6
Q ss_pred CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChHHH
Q psy16214 34 CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA----LGDAPTARSNLKALQELDPDNPAIA 109 (470)
Q Consensus 34 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~ 109 (470)
+|.++.+++.+|.++...|++++|+..|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------- 72 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------- 72 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------
Confidence 355666666666666666666666666666666 5566666666666666 666666666666665532
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCC
Q psy16214 110 QESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH----LNRLQEAQEIANSILATDKQN 185 (470)
Q Consensus 110 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~ 185 (470)
++.++..+|.++.. .+++++|+..+++++.. ++
T Consensus 73 -----------------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~ 109 (273)
T 1ouv_A 73 -----------------------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KY 109 (273)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred -----------------------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CC
Confidence 22334445555555 66666666666666654 35
Q ss_pred hHHHHHHHHHHhc----cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q psy16214 186 PDAVFVRGLCLYY----DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV----AGKNQEAFDIYTE 257 (470)
Q Consensus 186 ~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~ 257 (470)
+.+++.+|.++.. .+++++|+.+|+++++.. +..++..+ |.++.. .+++++|+.+|++
T Consensus 110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l------------g~~~~~~~~~~~~~~~A~~~~~~ 175 (273)
T 1ouv_A 110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL------------GSLYDAGRGTPKDLKKALASYDK 175 (273)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH------------HHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH------------HHHHHcCCCCCCCHHHHHHHHHH
Confidence 6666666666666 666666666666666654 34444444 666666 6777777777777
Q ss_pred HHhhcccCccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHH
Q psy16214 258 ALKIDARNININSKLLHNRATVLFK----MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEK 329 (470)
Q Consensus 258 al~~~p~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 329 (470)
+++..+ +.++..+|.++.. .+++++|+.+++++++..| +.+++.+|.++.. .+++++|+.+|++
T Consensus 176 a~~~~~------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 176 ACDLKD------SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHTTC------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHCCC------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 766532 3456777777777 7777777777777777654 6677777777777 7777777777777
Q ss_pred HHhcCCC
Q psy16214 330 IYKMDNS 336 (470)
Q Consensus 330 a~~~~p~ 336 (470)
++++.|+
T Consensus 248 a~~~~~~ 254 (273)
T 1ouv_A 248 GCKLGAK 254 (273)
T ss_dssp HHHHTCH
T ss_pred HHHcCCH
Confidence 7777764
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=1.2e-22 Score=182.42 Aligned_cols=209 Identities=11% Similarity=0.063 Sum_probs=175.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214 68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ 147 (470)
Q Consensus 68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 147 (470)
+|.++.+++.+|.++...|++++|+.+|+++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------------------------------------------- 34 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD----------------------------------------------- 34 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------------------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----------------------------------------------
Confidence 466777777777777777777777777777655
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHhhCCCh
Q psy16214 148 GVASKTYKLMKAECLAH----LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY----DDKMDLAVNHFQLLLKLAPDH 219 (470)
Q Consensus 148 ~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~ 219 (470)
|.++.++..+|.++.. .+++++|+..++++++.. ++.+++.+|.++.. .+++++|+..|+++++.. +
T Consensus 35 -~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~ 109 (273)
T 1ouv_A 35 -LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y 109 (273)
T ss_dssp -TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred -CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C
Confidence 3344556778888998 999999999999999875 89999999999999 999999999999999874 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH----cCCHHHHHH
Q psy16214 220 AKAKETYKRAKLLKAKKEEGNEKFV----AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK----MGKYNEAIA 291 (470)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 291 (470)
+.++..+ |.++.. .+++++|+.+|+++++..+ ..++.++|.++.. .+++++|+.
T Consensus 110 ~~a~~~l------------g~~~~~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 110 AEGCASL------------GGIYHDGKVVTRDFKKAVEYFTKACDLND------GDGCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp HHHHHHH------------HHHHHHCSSSCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred ccHHHHH------------HHHHHcCCCcccCHHHHHHHHHHHHhcCc------HHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 7777777 999999 9999999999999998763 3578999999999 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q psy16214 292 DCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEKIYKMDNSRENHNFLEEAKRL 349 (470)
Q Consensus 292 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~ 349 (470)
+++++++. .++.+++.+|.++.. .+++++|+.+|+++++..| ......+..+...
T Consensus 172 ~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 172 SYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHc
Confidence 99999987 468999999999999 9999999999999999987 5555555555443
No 51
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=7.9e-22 Score=194.51 Aligned_cols=296 Identities=10% Similarity=-0.057 Sum_probs=241.0
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q psy16214 27 YSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP 106 (470)
Q Consensus 27 ~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 106 (470)
++++++.+|.+..+|..++.. ...|++++|...|+++++..|.+...|..++..+...|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678999999999999999984 7899999999999999999999999999999999999999999999999999999 57
Q ss_pred HHHHHHHHHHH-H-----------HHHHHHHHH-----------------HH----------hcCCHHHHHHHHHHHHHh
Q psy16214 107 AIAQESKALET-M-----------AKNFEGASK-----------------AF----------EANDYRTAMFYLDRAMDQ 147 (470)
Q Consensus 107 ~~~~~l~~~~~-~-----------~~~~~~a~~-----------------~~----------~~~~~~~A~~~~~~~l~~ 147 (470)
..|..++.... . ...++.+.. .. ..|+++.|..+|++++.
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~- 158 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV- 158 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence 77776664221 1 112222211 11 15778889999999888
Q ss_pred CCCCH--HHHHHHHH---------------------------------------------------------------HH
Q psy16214 148 GVASK--TYKLMKAE---------------------------------------------------------------CL 162 (470)
Q Consensus 148 ~p~~~--~~~~~~a~---------------------------------------------------------------~~ 162 (470)
.|... .++...+. +.
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 45432 12111110 00
Q ss_pred HHc------CC----HHHHHHHHHHHhhcCCCChHHHHHHHHHHhc-------cCChH-------HHHHHHHHHHh-hCC
Q psy16214 163 AHL------NR----LQEAQEIANSILATDKQNPDAVFVRGLCLYY-------DDKMD-------LAVNHFQLLLK-LAP 217 (470)
Q Consensus 163 ~~~------~~----~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~l~-~~p 217 (470)
... ++ ...++..|++++...|.++.+|+.+|.++.. .|+++ +|+..|+++++ ..|
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 000 11 1367789999999999999999999999986 79987 99999999997 899
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16214 218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL 297 (470)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (470)
++..++..+ +..+...|++++|...|++++...|.++ ..+|..++.++.+.|++++|...|++++
T Consensus 319 ~~~~l~~~~------------~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 319 KNMLLYFAY------------ADYEESRMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp SCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHSSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhCccccCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999888 9999999999999999999999988853 3579999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCC-hhHH
Q psy16214 298 EKDPNYLKALSRRCKC-FHALGQYKECVIDAEKIYKMDNS-RENH 340 (470)
Q Consensus 298 ~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~p~-~~~~ 340 (470)
+..|.....+...+.+ +...|++++|...|+++++..|+ ..+.
T Consensus 384 ~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 384 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 428 (530)
T ss_dssp TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence 9999888888777766 34699999999999999999996 4443
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=4e-24 Score=207.13 Aligned_cols=214 Identities=14% Similarity=0.070 Sum_probs=200.1
Q ss_pred CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy16214 19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMY-TYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKA 97 (470)
Q Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (470)
.+++|+..+.++....|.++.+++.+|.++...|++ ++|+..|+++++++|+++.++..+|.+|..+|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367788889888889999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Q psy16214 98 LQELDPDNPAIAQESKALETMAKNFEGASKAFEA---------NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL--- 165 (470)
Q Consensus 98 ~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--- 165 (470)
+++++|+ ..++..++.+ +... |++++|+..++++++.+|++..++..+|.++...
T Consensus 163 al~~~p~-~~~~~~lg~~------------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMV------------LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHTTCCC-HHHHHHHHHH------------HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHH------------HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999 6777666666 5555 8899999999999999999999999999999999
Q ss_pred -----CCHHHHHHHHHHHhhcCC---CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q psy16214 166 -----NRLQEAQEIANSILATDK---QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237 (470)
Q Consensus 166 -----~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 237 (470)
|++++|+..|+++++++| .++.+++.+|.++...|++++|+..|+++++++|++..++..+
T Consensus 230 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l----------- 298 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE----------- 298 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------
T ss_pred hccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-----------
Confidence 999999999999999999 9999999999999999999999999999999999999988888
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q psy16214 238 EGNEKFVAGKNQEAFDIYTE 257 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~ 257 (470)
+.++...|++++|+..+.+
T Consensus 299 -~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 299 -QQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp -HHHHHHHHHHHHHHHHTTT
T ss_pred -HHHHHHHHHHHHHHHHhcc
Confidence 8888888999888876654
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=5.8e-23 Score=182.13 Aligned_cols=207 Identities=14% Similarity=0.009 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALET 117 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 117 (470)
+.+++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA----------- 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH-----------
Confidence 455555555555555555555555555555555555555555555555555555555555544444332
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCCChHHHHHHHHH
Q psy16214 118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA--TDKQNPDAVFVRGLC 195 (470)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~ 195 (470)
.++..+|.++...|++++|+..+++++. ..|.++.++..+|.+
T Consensus 106 -----------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 106 -----------------------------------RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150 (252)
T ss_dssp -----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence 2333444455555555555555555555 444444455555555
Q ss_pred HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHH
Q psy16214 196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN 275 (470)
Q Consensus 196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 275 (470)
+...|++++|+..+++++...|.+..++..+ |.++...|++++|+..+++++...|. ...++..
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~ 214 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEM------------ADLLYKEREYVPARQYYDLFAQGGGQ----NARSLLL 214 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHTTSCC----CHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCcccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcC----cHHHHHH
Confidence 5555555555555555555554444444433 44444444444444444444444444 2233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214 276 RATVLFKMGKYNEAIADCTLALEKDPNYLKA 306 (470)
Q Consensus 276 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (470)
++.++...|++++|..+++++++..|+++.+
T Consensus 215 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 215 GIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4444444444444444444444444444433
No 54
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=5.3e-23 Score=179.57 Aligned_cols=173 Identities=17% Similarity=0.238 Sum_probs=143.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
+++.++.+|..++..|+|++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 578899999999999999999999999999998 8888999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC 161 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 161 (470)
+..+|++++|+..++++++++|+++..+..++. ++..+|.+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~---------------------------------------~~~~~g~~ 126 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAI---------------------------------------YYLKEGQK 126 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH---------------------------------------HHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH---------------------------------------HHHHHhHH
Confidence 999999999999999999999998876544333 34557777
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCCh
Q psy16214 162 LAHLNRLQEAQEIANSILATDKQ--NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH 219 (470)
Q Consensus 162 ~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 219 (470)
+...|++++|+..++++++.+|+ ++.+++.+|.++...| ...++++..+.+..
T Consensus 127 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~ 181 (228)
T 4i17_A 127 FQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSN 181 (228)
T ss_dssp HHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTC
T ss_pred HHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCC
Confidence 77777777777777777777777 7777777777775433 33445555554444
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=1e-22 Score=176.92 Aligned_cols=216 Identities=17% Similarity=0.090 Sum_probs=158.8
Q ss_pred cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214 33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES 112 (470)
Q Consensus 33 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 112 (470)
..|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---- 78 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI---- 78 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH----
Confidence 4677888888999999999999999999999999999888888889999888888888888888888777766554
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhh--cCCCChHHH
Q psy16214 113 KALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL-NRLQEAQEIANSILA--TDKQNPDAV 189 (470)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~--~~p~~~~~~ 189 (470)
+..+|.++... |++++|+..+++++. ..|.+..++
T Consensus 79 ------------------------------------------~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 116 (225)
T 2vq2_A 79 ------------------------------------------NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN 116 (225)
T ss_dssp ------------------------------------------HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHH
T ss_pred ------------------------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHH
Confidence 34456666666 666666666666666 445556667
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCccc
Q psy16214 190 FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA-RNINI 268 (470)
Q Consensus 190 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 268 (470)
..+|.++...|++++|+..++++++..|++..++..+ |.++...|++++|+..+++++...| .+
T Consensus 117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 181 (225)
T 2vq2_A 117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL------------ARTKMLAGQLGDADYYFKKYQSRVEVLQ--- 181 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHHCSCC---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCC---
Confidence 7777777777777777777777777777766666665 7777777777777777777777766 53
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR 310 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (470)
...+..++.++...|++++|..+++.++..+|+++.+...+
T Consensus 182 -~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 182 -ADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 34466667777777777777777777777777776665443
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=1.6e-23 Score=202.83 Aligned_cols=215 Identities=16% Similarity=0.111 Sum_probs=201.5
Q ss_pred ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy16214 87 DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDY-RTAMFYLDRAMDQGVASKTYKLMKAECLAHL 165 (470)
Q Consensus 87 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 165 (470)
.+++|+..+..+....|.+..++..++.+ +...|++ ++|+..++++++.+|++..++..+|.++...
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~------------~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 150 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKA------------LNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHH------------HTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHH------------HHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 46778888888888899999988666665 7888999 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc---------CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Q psy16214 166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD---------DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKK 236 (470)
Q Consensus 166 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 236 (470)
|++++|+.+|+++++.+|+ ..++..+|.++... |++++|+..|+++++++|++..++..+
T Consensus 151 g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---------- 219 (474)
T 4abn_A 151 GDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL---------- 219 (474)
T ss_dssp TCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH----------
T ss_pred CCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH----------
Confidence 9999999999999999999 79999999999999 999999999999999999999999888
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHhhcc---cCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214 237 EEGNEKFVA--------GKNQEAFDIYTEALKIDA---RNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305 (470)
Q Consensus 237 ~~~~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (470)
|.++... |++++|+..|++++.++| . .+.++.++|.++..+|++++|+..|+++++++|+++.
T Consensus 220 --g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 220 --GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS----NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293 (474)
T ss_dssp --HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999988 999999999999999999 6 5678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214 306 ALSRRCKCFHALGQYKECVIDAEKI 330 (470)
Q Consensus 306 ~~~~la~~~~~~g~~~~A~~~~~~a 330 (470)
++..++.++..+|++++|+..+.++
T Consensus 294 a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 294 PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999877654
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.91 E-value=3.3e-23 Score=186.13 Aligned_cols=224 Identities=15% Similarity=0.069 Sum_probs=197.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.+..++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|.++.++..+|.++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL 162 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 162 (470)
..+|++++|+..+++++++.|++......+.. ....|++++|+..+.+++...|.+...+. ++.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~ 187 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL-------------AEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFY 187 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-------------HHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHHHHH-------------HHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHH
Confidence 99999999999999999999999865433221 24458999999999999999998876654 78888
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214 163 AHLNRLQEAQEIANSILATDKQN----PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238 (470)
Q Consensus 163 ~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 238 (470)
...++.++|+..+.+++...|.. +.++..+|.++...|++++|+..|++++..+|++...+
T Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------------- 252 (275)
T 1xnf_A 188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH--------------- 252 (275)
T ss_dssp TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---------------
T ss_pred HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---------------
Confidence 88999999999999999887743 68999999999999999999999999999999875433
Q ss_pred HHHHHhcCCHHHHHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIY 255 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~ 255 (470)
+.++...+++++|++.+
T Consensus 253 ~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 66777888999998887
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=3.9e-22 Score=182.33 Aligned_cols=227 Identities=11% Similarity=0.010 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214 55 TYALDDAKLAVSLDPRFSKGLIRQIKCNIA-------LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASK 127 (470)
Q Consensus 55 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 127 (470)
++|+..|++++..+|.++.+|+.+|..+.. .|++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~-------------------------------------- 74 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN-------------------------------------- 74 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCH--------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchh--------------------------------------
Confidence 688889999999999999999998888864 35540
Q ss_pred HHhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH-HHHHHHHHHhccCChHHH
Q psy16214 128 AFEANDYRTAMFYLDRAMD-QGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD-AVFVRGLCLYYDDKMDLA 205 (470)
Q Consensus 128 ~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A 205 (470)
...+.+++|+..+++++. ..|++..+|..+|.++...|++++|...|+++++..|.++. +|..+|.++...|++++|
T Consensus 75 -~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 75 -NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp -HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred -hcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHH
Confidence 001223334444444444 34555555566666666677777777777777777776665 677777777777777777
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcC
Q psy16214 206 VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF-VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG 284 (470)
Q Consensus 206 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g 284 (470)
+..|+++++..|.+..++... +.... ..|++++|+.+|+++++..|++ ..+|..++.++..+|
T Consensus 154 ~~~~~~a~~~~p~~~~~~~~~------------a~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~g 217 (308)
T 2ond_A 154 RMIFKKAREDARTRHHVYVTA------------ALMEYYCSKDKSVAFKIFELGLKKYGDI----PEYVLAYIDYLSHLN 217 (308)
T ss_dssp HHHHHHHHTSTTCCTHHHHHH------------HHHHHHTSCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCC
Confidence 777777777776665554332 33322 2577777777777777777763 455777777777777
Q ss_pred CHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 285 KYNEAIADCTLALEK---DP-NYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 285 ~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++++|+..|++++.. .| +...+|..++..+...|++++|...++++++..|+
T Consensus 218 ~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 777777777777774 44 35667777777777777777777777777777775
No 59
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.91 E-value=3.3e-23 Score=195.81 Aligned_cols=312 Identities=9% Similarity=-0.019 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---chh--HHHHHH--HHHHHHcCChHHHH-----------HHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCP---NVA--AYYGNR--AACYMMLGMYTYAL-----------DDAKLAV 65 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~--~~~~~~--a~~~~~~g~~~~A~-----------~~~~~al 65 (470)
+...++....+...+++++|..+++++.+.-+ .+. ..++.+ .......+.+..+. ..++++
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i- 90 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI- 90 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH-
Confidence 45566777788999999999999999865422 122 222322 22233344444444 455543
Q ss_pred hcCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy16214 66 SLDPRFSK------GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMF 139 (470)
Q Consensus 66 ~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 139 (470)
+..|.... .++.+|.++...|++++|+..+++++++.+..+... ..+.+ ....|..+...|++++|+.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~a~~-----~~~lg~~~~~~~~~~~A~~ 164 (383)
T 3ulq_A 91 DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI-EKAEF-----FFKMSESYYYMKQTYFSMD 164 (383)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH-HHHHH-----HHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH-HHHHH-----HHHHHHHHHHcCCHHHHHH
Confidence 32333333 344599999999999999999999998732211100 01111 2344555788899999999
Q ss_pred HHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh------HHHHHHHHHHhccCChHHHH
Q psy16214 140 YLDRAMDQGVAS-------KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP------DAVFVRGLCLYYDDKMDLAV 206 (470)
Q Consensus 140 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~ 206 (470)
++.+++...+.. ..++..+|.++...|++++|+..+++++...+... .++.++|.++...|++++|+
T Consensus 165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 999999884433 45788999999999999999999999998765443 58999999999999999999
Q ss_pred HHHHHHHh-----hC-CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHH
Q psy16214 207 NHFQLLLK-----LA-PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRAT 278 (470)
Q Consensus 207 ~~~~~~l~-----~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~ 278 (470)
.++++++. .+ |....++..+ |.++...|++++|+.++++++.+.+. ++. ....+..++.
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l~~ 311 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLI------------TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI-YLSEFEFLKS 311 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHH
Confidence 99999999 45 6666666666 99999999999999999999988654 222 2233677999
Q ss_pred HHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 279 VLFKMGK---YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 279 ~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++...|+ +.+|+..+++. ...|....++..+|.+|..+|++++|..+|++++++...
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999 88888888876 334555778999999999999999999999999987653
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.91 E-value=1.6e-22 Score=194.65 Aligned_cols=301 Identities=9% Similarity=-0.070 Sum_probs=224.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMY---TYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
..+|..++..|++++|+..|+++.+. .++.+++.+|.+|...|++ ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56799999999999999999999876 5688899999999999998 9999999999976 77899999997777
Q ss_pred cC-----ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-----------------------HHHHHHHHhcCC---
Q psy16214 85 LG-----DAPTARSNLKALQELDPDNPAIAQESKALETMAKN-----------------------FEGASKAFEAND--- 133 (470)
Q Consensus 85 ~g-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-----------------------~~~a~~~~~~~~--- 133 (470)
.+ ++++|+.+|+++++. .++.++..++.++...+. +..+..+...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 76 889999999999984 455577788887754322 222333444443
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc----CChHHH
Q psy16214 134 -YRTAMFYLDRAMDQGVASKTYKLMKAECLAHLN---RLQEAQEIANSILATDKQNPDAVFVRGLCLYYD----DKMDLA 205 (470)
Q Consensus 134 -~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A 205 (470)
.+.+..++..+...+|. ++..+|.+|...| ++++|+..|+++....|.....++.+|.+|... +++++|
T Consensus 160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 34444445554444444 8899999999999 999999999999999999999999999999766 799999
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH
Q psy16214 206 VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE-K--FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK 282 (470)
Q Consensus 206 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~ 282 (470)
+.+|+++. |+++.++..+ |.+ + ...+++++|+.+|+++.+.. .+.+++++|.+|.
T Consensus 237 ~~~~~~aa---~g~~~a~~~L------------g~~~~~~~~~~d~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 237 QALLEKIA---PGYPASWVSL------------AQLLYDFPELGDVEQMMKYLDNGRAAD------QPRAELLLGKLYY- 294 (452)
T ss_dssp HHHHHHHG---GGSTHHHHHH------------HHHHHHSGGGCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHH-
T ss_pred HHHHHHHc---CCCHHHHHHH------------HHHHHhCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-
Confidence 99999998 8888888888 887 4 57899999999999998654 3567999999998
Q ss_pred cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCChhHHHHHH
Q psy16214 283 MG-----KYNEAIADCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEKIYKMDNSRENHNFLE 344 (470)
Q Consensus 283 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~ 344 (470)
.| ++++|+.+|+++. |.++.+++++|.+|.. ..++++|+.+|+++.+... .+....|.
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A~~~Lg 361 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSADFAIA 361 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHHHHHHH
Confidence 66 9999999999999 9999999999999987 4599999999999998654 44444443
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=8.9e-23 Score=178.11 Aligned_cols=186 Identities=17% Similarity=0.093 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHH
Q psy16214 150 ASKTYKLMKAECLAHLNRLQEAQEIANSILATDK-QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKR 228 (470)
Q Consensus 150 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 228 (470)
.++..+..+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..+++++..+|++..++..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-- 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK-- 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH--
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH--
Confidence 3455666666666666666666666666666666 6666666666666666666666666666666666666666655
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C
Q psy16214 229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI---NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN--Y 303 (470)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~ 303 (470)
|.++...|++++|+..++++++..|+++.. ...++..+|.++..+|++++|+..|+++++++|+ +
T Consensus 83 ----------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 152 (228)
T 4i17_A 83 ----------SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK 152 (228)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH
T ss_pred ----------HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc
Confidence 666666666666666666666666664321 1144666666666666666666666666666666 6
Q ss_pred HHHHHHHHHHHHHhCCH---------------------------HHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q psy16214 304 LKALSRRCKCFHALGQY---------------------------KECVIDAEKIYKMDNS-RENHNFLEEAK 347 (470)
Q Consensus 304 ~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~a~~~~p~-~~~~~~l~~~~ 347 (470)
+.++..+|.++...|+. ++|+.+|+++++++|+ .++...+..+.
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 153 TDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 66666666666666666 9999999999999998 56666665543
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=1.4e-22 Score=195.11 Aligned_cols=307 Identities=11% Similarity=-0.002 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCCCHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQY---SKALKCYSEAISVCPNVAAYYGNRAACYMMLG-----MYTYALDDAKLAVSLDPRFSKGL 75 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~ 75 (470)
+++++.+|..++..|++ ++|+.+|+++++. ++.+++++|.++...+ ++++|+..|+++++.+ ++.++
T Consensus 35 ~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~ 109 (452)
T 3e4b_A 35 SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTL 109 (452)
T ss_dssp CTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHH
Confidence 45566778888888888 8899999988866 6778888888776665 7788999998888743 44477
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHH-----------------------HHHHHHHHHhc
Q psy16214 76 IRQIKCNIALGDAPTARSNLKALQEL-DPDNPAIAQESKALETMAK-----------------------NFEGASKAFEA 131 (470)
Q Consensus 76 ~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~ 131 (470)
+.+|.+|...+...++...++..... .+.++.++..++.++...+ .+..+..+...
T Consensus 110 ~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~ 189 (452)
T 3e4b_A 110 IPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKK 189 (452)
T ss_dssp HHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777766544333332222221 1233445555555554333 12333345556
Q ss_pred C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhhcCCCChHHHHHHHHH-H--hccCC
Q psy16214 132 N---DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL----NRLQEAQEIANSILATDKQNPDAVFVRGLC-L--YYDDK 201 (470)
Q Consensus 132 ~---~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~--~~~g~ 201 (470)
| ++++|+.+++++....|.....+..+|.+|... +++++|+.+|+++. |.++.+++.+|.+ + ...++
T Consensus 190 g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 190 QQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCC
T ss_pred CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCC
Confidence 7 899999999999999999999989999999766 79999999999998 8999999999999 4 57899
Q ss_pred hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhcccCccchHHHHHHH
Q psy16214 202 MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG-----KNQEAFDIYTEALKIDARNININSKLLHNR 276 (470)
Q Consensus 202 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~l 276 (470)
+++|+.+|+++.+. .++.+...+ |.+|. .| ++++|+.+|+++. +. .+.+++++
T Consensus 267 ~~~A~~~~~~Aa~~--g~~~A~~~L------------g~~y~-~G~g~~~d~~~A~~~~~~Aa---~g----~~~A~~~L 324 (452)
T 3e4b_A 267 VEQMMKYLDNGRAA--DQPRAELLL------------GKLYY-EGKWVPADAKAAEAHFEKAV---GR----EVAADYYL 324 (452)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHH------------HHHHH-HCSSSCCCHHHHHHHHHTTT---TT----CHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHH------------HHHHH-cCCCCCCCHHHHHHHHHHHh---CC----CHHHHHHH
Confidence 99999999999865 467777777 88888 55 9999999999998 66 46779999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCChhHHHHH
Q psy16214 277 ATVLFK----MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEKIYKMDNSRENHNFL 343 (470)
Q Consensus 277 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l 343 (470)
|.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+|.. ..++.+|..+|+++.+..+ ......+
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l 396 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLA 396 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHH
Confidence 999887 4499999999999987 4668899999999985 5699999999999999876 3333333
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=5.3e-23 Score=206.75 Aligned_cols=174 Identities=19% Similarity=0.202 Sum_probs=167.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 147 QGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 147 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
..|+++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306 (470)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (470)
|.++...|++++|++.|+++++++|+ ...++.++|.++..+|++++|+..|+++++++|+++.+
T Consensus 84 ------------g~~l~~~g~~~~A~~~~~kAl~l~P~----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a 147 (723)
T 4gyw_A 84 ------------GNTLKEMQDVQGALQCYTRAIQINPA----FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147 (723)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred ------------HHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999 56789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 307 LSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+.++|.++..+|++++|.+.+++++++.|+
T Consensus 148 ~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 148 YCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999987653
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=1.1e-22 Score=204.59 Aligned_cols=175 Identities=18% Similarity=0.102 Sum_probs=138.4
Q ss_pred cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214 33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES 112 (470)
Q Consensus 33 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 112 (470)
..|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++..++..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35677777777777777777777777777777777777777777777777777777777777777777777777776655
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHH
Q psy16214 113 KALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVR 192 (470)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 192 (470)
+.+ +...|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|+++.++.++
T Consensus 84 g~~------------l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L 151 (723)
T 4gyw_A 84 GNT------------LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151 (723)
T ss_dssp HHH------------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHH------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhh
Confidence 555 55567777777777777777788888888899999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHhhCCCh
Q psy16214 193 GLCLYYDDKMDLAVNHFQLLLKLAPDH 219 (470)
Q Consensus 193 a~~~~~~g~~~~A~~~~~~~l~~~p~~ 219 (470)
|.++...|++++|++.+++++++.|+.
T Consensus 152 ~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 152 AHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 999999999999999999998876543
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.90 E-value=1.7e-22 Score=192.68 Aligned_cols=255 Identities=15% Similarity=0.089 Sum_probs=204.1
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214 36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS----KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE 111 (470)
Q Consensus 36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 111 (470)
.....+..+|.+++..|++++|+..|++++++.|+++ .++..+|.++...|++++|+..+++++.+....
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 119 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------ 119 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------
Confidence 4466677888888999999999999999998888876 578888888888899888888888877642110
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc------CCCC
Q psy16214 112 SKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT------DKQN 185 (470)
Q Consensus 112 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~ 185 (470)
...|....++..+|.++...|++++|+..+++++.. .|..
T Consensus 120 ----------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 165 (411)
T 4a1s_A 120 ----------------------------------NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE 165 (411)
T ss_dssp ----------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ----------------------------------cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH
Confidence 001233456778899999999999999999999887 4556
Q ss_pred hHHHHHHHHHHhccCC-----------------hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214 186 PDAVFVRGLCLYYDDK-----------------MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248 (470)
Q Consensus 186 ~~~~~~la~~~~~~g~-----------------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (470)
..++..+|.++...|+ +++|+.++++++.+.+...... .....+...|.++...|++
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG------AQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHHHHcCCh
Confidence 7799999999999999 9999999999887643221100 0111223349999999999
Q ss_pred HHHHHHHHHHHhhcccCcc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCH
Q psy16214 249 QEAFDIYTEALKIDARNIN--INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY------LKALSRRCKCFHALGQY 320 (470)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 320 (470)
++|+.++++++.+.+.... ....++..+|.++..+|++++|+.++++++.+.|.. ..++..+|.++..+|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999998775322 234589999999999999999999999999987754 78899999999999999
Q ss_pred HHHHHHHHHHHhcCCC
Q psy16214 321 KECVIDAEKIYKMDNS 336 (470)
Q Consensus 321 ~~A~~~~~~a~~~~p~ 336 (470)
++|+.++++++++.+.
T Consensus 320 ~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 320 NTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988654
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.90 E-value=3.1e-22 Score=178.53 Aligned_cols=196 Identities=12% Similarity=0.124 Sum_probs=171.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGL 75 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 75 (470)
.+++.++.+|..++..|+|++|+..|++++..+|++ +.+++.+|.+++.+|++++|+..|+++++.+|++ +.++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 367899999999999999999999999999999998 8999999999999999999999999999998854 6789
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214 76 IRQIKCNIA--------LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ 147 (470)
Q Consensus 76 ~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 147 (470)
+.+|.++.. +|++++|+..|+++++..|+++.+...+..+......
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-------------------------- 146 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-------------------------- 146 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH--------------------------
Confidence 999999999 9999999999999999999998776554443222211
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhcc----------CChHHHHHHHHHHHh
Q psy16214 148 GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGLCLYYD----------DKMDLAVNHFQLLLK 214 (470)
Q Consensus 148 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----------g~~~~A~~~~~~~l~ 214 (470)
....++.+|.++...|++++|+..|+++++..|++ +.+++.+|.++... |++++|+..|+++++
T Consensus 147 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 147 ---LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 12336789999999999999999999999999984 56999999999877 899999999999999
Q ss_pred hCCChHHHHHHH
Q psy16214 215 LAPDHAKAKETY 226 (470)
Q Consensus 215 ~~p~~~~~~~~~ 226 (470)
..|+++.+....
T Consensus 224 ~~p~~~~~~~a~ 235 (261)
T 3qky_A 224 IFPDSPLLRTAE 235 (261)
T ss_dssp HCTTCTHHHHHH
T ss_pred HCCCChHHHHHH
Confidence 999997665544
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.89 E-value=2.6e-22 Score=189.67 Aligned_cols=243 Identities=13% Similarity=0.051 Sum_probs=186.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc---CC---chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------CHH
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAISV---CP---NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR-------FSK 73 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~ 73 (470)
++.+|..++..|+|++|+.+|++++.. .| ..+.++..+|.++..+|++++|+..+++++++.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 444888888888888888888888876 22 24678888888888888888888888888887433 245
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214 74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT 153 (470)
Q Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 153 (470)
++..+|.+|..+|++++|+.++++++++.+..... +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------------------~~~~~ 225 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP----------------------------------------QLMGR 225 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------------------------HHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh----------------------------------------HHHHH
Confidence 77888888888888888888888887754432211 01124
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh-----cC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHH
Q psy16214 154 YKLMKAECLAHLNRLQEAQEIANSILA-----TD-KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYK 227 (470)
Q Consensus 154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 227 (470)
++.++|.++...|++++|+.++++++. .+ |..+.++..+|.++...|++++|+.++++++.+.+.........
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 304 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS- 304 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-
Confidence 667799999999999999999999998 45 77788999999999999999999999999998754321111100
Q ss_pred HHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16214 228 RAKLLKAKKEEGNEKFVAGK---NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301 (470)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (470)
.....+.++...|+ +.+|+..+++. ...|. ...++..+|.++..+|++++|+.++++++++..
T Consensus 305 ------~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~----~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 305 ------EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYAD----LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp ------HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 01123899999999 78888888776 22222 567889999999999999999999999998744
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.89 E-value=3.2e-22 Score=184.79 Aligned_cols=253 Identities=13% Similarity=0.053 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHH
Q psy16214 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF----SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESK 113 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 113 (470)
...+...|.++...|++++|+..++++++.+|.+ ..++..+|.++...|++++|+..+++++.+.+..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------- 76 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-------- 76 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--------
Confidence 4567788999999999999999999999999988 4678899999999999999999999887642110
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC------hH
Q psy16214 114 ALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN------PD 187 (470)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~ 187 (470)
...|....++..+|.++...|++++|+..+++++...|.. ..
T Consensus 77 --------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 77 --------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp --------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 0011223567778999999999999999999998876544 34
Q ss_pred HHHHHHHHHhccCC--------------------hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16214 188 AVFVRGLCLYYDDK--------------------MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGK 247 (470)
Q Consensus 188 ~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (470)
++..+|.++...|+ +++|+..+++++...+...... .....+...|.++...|+
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~ 198 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA------AQGRAFGNLGNTHYLLGN 198 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHHHHHhCC
Confidence 89999999999999 9999999999887532211100 011122334999999999
Q ss_pred HHHHHHHHHHHHhhcccCc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCC
Q psy16214 248 NQEAFDIYTEALKIDARNI--NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY------LKALSRRCKCFHALGQ 319 (470)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~ 319 (470)
+++|+.++++++...+... .....++..+|.++...|++++|+.++++++.+.|.. ..++..+|.++...|+
T Consensus 199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 9999999999998866532 2235689999999999999999999999999986655 7889999999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy16214 320 YKECVIDAEKIYKMDNS 336 (470)
Q Consensus 320 ~~~A~~~~~~a~~~~p~ 336 (470)
+++|+.++++++++.|.
T Consensus 279 ~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 279 YEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=185.65 Aligned_cols=253 Identities=14% Similarity=0.080 Sum_probs=193.9
Q ss_pred cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy16214 33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--------DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD 104 (470)
Q Consensus 33 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 104 (470)
.+|..+.++..+|.++...|++++|+..+++++++ .|....++..+|.++...|++++|+.++++++.+..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~- 100 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE- 100 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-
Confidence 35677899999999999999999999999999995 666788999999999999999999999999876421
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-
Q psy16214 105 NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM-DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD- 182 (470)
Q Consensus 105 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~- 182 (470)
+.. ...|....++..+|.++...|++++|+..+++++...
T Consensus 101 --------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 101 --------------------------------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142 (311)
T ss_dssp --------------------------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 000 0112234567778999999999999999999998774
Q ss_pred -------CCChHHHHHHHHHHhccCChHHHHHHHHHHHhh--------CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16214 183 -------KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL--------APDHAKAKETYKRAKLLKAKKEEGNEKFVAGK 247 (470)
Q Consensus 183 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (470)
|....++..+|.++...|++++|+.++++++.. .|....++..+ |.++...|+
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~ 210 (311)
T 3nf1_A 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNL------------ASCYLKQGK 210 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHH------------HHHHHHHTC
T ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------HHHHHHcCC
Confidence 555678999999999999999999999999987 55555556555 999999999
Q ss_pred HHHHHHHHHHHHhhcccC---------cc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 248 NQEAFDIYTEALKIDARN---------IN--INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA 316 (470)
Q Consensus 248 ~~~A~~~~~~al~~~p~~---------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 316 (470)
+++|+.++++++...|.. .. .....+..++..+...+.+.+|+..+.+++...|..+.++..+|.++..
T Consensus 211 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~ 290 (311)
T 3nf1_A 211 FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR 290 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH
Confidence 999999999999865431 11 1233444555566667778888889999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCC
Q psy16214 317 LGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 317 ~g~~~~A~~~~~~a~~~~p~ 336 (470)
+|++++|+.+|++++++.|.
T Consensus 291 ~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 291 QGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HTCHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999998773
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.89 E-value=1.4e-21 Score=174.19 Aligned_cols=219 Identities=11% Similarity=0.017 Sum_probs=148.8
Q ss_pred hhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChH
Q psy16214 31 ISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107 (470)
Q Consensus 31 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 107 (470)
...+|.++..++.+|.+++..|++++|+..|+++++.+|++ +.+++.+|.++..+|++++|+..|+++++..|+++.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 45678889999999999999999999999999999999988 889999999999999999999999999998887643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHh
Q psy16214 108 IAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH--------LNRLQEAQEIANSIL 179 (470)
Q Consensus 108 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~~l 179 (470)
. +.+++.+|.++.. .|++++|+..|++++
T Consensus 88 ~-------------------------------------------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l 124 (261)
T 3qky_A 88 V-------------------------------------------PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI 124 (261)
T ss_dssp H-------------------------------------------HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH
T ss_pred h-------------------------------------------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence 2 2345667777777 677777777777777
Q ss_pred hcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214 180 ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL 259 (470)
Q Consensus 180 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 259 (470)
..+|+++.+...+..+....+.. ...+.. .|.++...|++++|+..|++++
T Consensus 125 ~~~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~~------------la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 125 DRYPNHELVDDATQKIRELRAKL-----------------ARKQYE------------AARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHH-----------------HHHHHH------------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCcCchhHHHHHHHHHHHHHHH-----------------HHHHHH------------HHHHHHHccCHHHHHHHHHHHH
Confidence 77776655443332221111100 011222 2667777777777777777777
Q ss_pred hhcccCccchHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHH
Q psy16214 260 KIDARNININSKLLHNRATVLFKM----------GKYNEAIADCTLALEKDPNYL---KALSRRCKCFHALGQYKE 322 (470)
Q Consensus 260 ~~~p~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~ 322 (470)
...|+++. ...+++.+|.++..+ |++++|+..|+++++..|+++ .+...++.++..++++++
T Consensus 176 ~~~p~~~~-~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 176 DAYPDTPW-ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHCTTSTT-HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCch-HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 76666443 245666777777655 666777777777777777663 444455555555555443
No 71
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.89 E-value=1.4e-20 Score=168.89 Aligned_cols=238 Identities=11% Similarity=0.020 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16214 55 TYALDDAKLAVSLDPRFSKGLIRQIKCNIALG--DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAN 132 (470)
Q Consensus 55 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 132 (470)
++|+..+.++|.++|++..+|..++.++..++ ++++++..+..++..+|++..+|...+.+....... .-..+
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-----l~~~~ 124 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-----NNNDF 124 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-----TTTCC
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-----ccccC
Confidence 45666666666666666666666666666666 666666666666666666666666666554221100 00024
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHhhcCCCChHHHHHHHHHHhccCC------hHH
Q psy16214 133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ--EAQEIANSILATDKQNPDAVFVRGLCLYYDDK------MDL 204 (470)
Q Consensus 133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~------~~~ 204 (470)
++++++..++++++.+|.+..+|..++.++...+.++ +++..+.+++..+|.+..+|..++.++...+. +++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 5667777777777777777777788888888888877 88888888888888888888888888888776 888
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhc---ccCccchHHHHHHHHHHH
Q psy16214 205 AVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE-AFDIYTEALKID---ARNININSKLLHNRATVL 280 (470)
Q Consensus 205 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~~~~~la~~~ 280 (470)
++.++.+++..+|++..+|..+ +.++...|+..+ ....+.+++... |. .+.++..++.++
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~------------~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~----s~~al~~la~~~ 268 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYL------------LGIHERFDRSITQLEEFSLQFVDLEKDQVT----SSFALETLAKIY 268 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHH------------HHHHHHTTCCGGGGHHHHHTTEEGGGTEES----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHH------------HHHHHhcCCChHHHHHHHHHHHhccCCCCC----CHHHHHHHHHHH
Confidence 8888888888888888888887 777777777544 455777777665 44 456788888888
Q ss_pred HHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q psy16214 281 FKMGKYNEAIADCTLALE-KDPNYLKALSRRCKC 313 (470)
Q Consensus 281 ~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~ 313 (470)
.+.|+.++|+++|+.+.+ .+|-....|..++..
T Consensus 269 ~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 888899999999998886 788888888877654
No 72
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.88 E-value=2.3e-20 Score=167.40 Aligned_cols=241 Identities=12% Similarity=-0.070 Sum_probs=173.3
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHH--
Q psy16214 8 KEDGNTQYKLKQY-SKALKCYSEAISVCPNVAAYYGNRAACYMMLG--MYTYALDDAKLAVSLDPRFSKGLIRQIKCN-- 82 (470)
Q Consensus 8 ~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~-- 82 (470)
+..-......|.+ ++|+.++.++|.++|++..+|+.++.++..++ ++++++..+..++..+|++..+|..++.++
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 3334444566666 58888888888888888888888888888888 888888888888888888888888888887
Q ss_pred --HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-----HHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCHH
Q psy16214 83 --IALGDAPTARSNLKALQELDPDNPAIAQESKALETM-----AKNFEGASKAFEANDYR--TAMFYLDRAMDQGVASKT 153 (470)
Q Consensus 83 --~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~--~A~~~~~~~l~~~p~~~~ 153 (470)
..++. .+........+..+... .............+.++ +++..++++++.+|.+..
T Consensus 116 ~~~~l~~--------------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s 181 (306)
T 3dra_A 116 IMELNNN--------------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS 181 (306)
T ss_dssp HHHHTTT--------------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhccc--------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence 33321 01111222222222111 11122223334456676 888888888888888888
Q ss_pred HHHHHHHHHHHcCC------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHH-HHHHHHHHhhC---CChHHHH
Q psy16214 154 YKLMKAECLAHLNR------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLA-VNHFQLLLKLA---PDHAKAK 223 (470)
Q Consensus 154 ~~~~~a~~~~~~~~------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~~~---p~~~~~~ 223 (470)
+|..++.++...+. ++++++++.+++..+|++..+|+.++.++...|+...+ ...+.+++.++ |.++.++
T Consensus 182 AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 182 AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 88888888888877 88888888888888888888888888888888886554 44666666665 7777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hcccCccchHHHHHHHHH
Q psy16214 224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK-IDARNININSKLLHNRAT 278 (470)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~la~ 278 (470)
..+ +.++.+.|+.++|+++|+.+.. .+|- ....|..++.
T Consensus 262 ~~l------------a~~~~~~~~~~~A~~~~~~l~~~~Dpi----r~~yW~~~~~ 301 (306)
T 3dra_A 262 ETL------------AKIYTQQKKYNESRTVYDLLKSKYNPI----RSNFWDYQIS 301 (306)
T ss_dssp HHH------------HHHHHHTTCHHHHHHHHHHHHHTTCGG----GHHHHHHHHH
T ss_pred HHH------------HHHHHccCCHHHHHHHHHHHHhccChH----HHHHHHHHHh
Confidence 777 8888888888888888888886 6887 4455666554
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=183.67 Aligned_cols=241 Identities=16% Similarity=0.105 Sum_probs=189.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISV--------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL------- 67 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------- 67 (470)
.+..+..+|..++..|++++|+.+|++++.. .|..+.++..+|.++...|++++|+..+++++.+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999999994 6777899999999999999999999999999987
Q ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy16214 68 -DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELD-----PDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYL 141 (470)
Q Consensus 68 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 141 (470)
.|....++..+|.++...|++++|+.++++++++. ++++.... .....+..+...|++++|+.++
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK---------QLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH---------HHHHHHHHHHTTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH---------HHHHHHHHHHHcCCHHHHHHHH
Confidence 35567899999999999999999999999999874 33332211 1233455578889999999999
Q ss_pred HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC---------CCChHHHHH------HHHHHhc
Q psy16214 142 DRAMDQ--------GVASKTYKLMKAECLAHLNRLQEAQEIANSILATD---------KQNPDAVFV------RGLCLYY 198 (470)
Q Consensus 142 ~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---------p~~~~~~~~------la~~~~~ 198 (470)
++++.. .|....++..+|.++...|++++|+..+++++... +.....+.. .+..+..
T Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 999988 66677889999999999999999999999999753 333333333 3444455
Q ss_pred cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214 199 DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR 264 (470)
Q Consensus 199 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 264 (470)
.+.+.+|+..+.++....|....++..+ |.++...|++++|+.+|++++++.|.
T Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 257 GTSFGEYGGWYKACKVDSPTVTTTLKNL------------GALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCSCCCC---------CHHHHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6777888889999999888888888887 99999999999999999999998775
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.88 E-value=2.6e-20 Score=175.17 Aligned_cols=201 Identities=16% Similarity=0.054 Sum_probs=152.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-----hHHHHHHHH
Q psy16214 128 AFEANDYRTAMFYLDRAMDQG--------VASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN-----PDAVFVRGL 194 (470)
Q Consensus 128 ~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~ 194 (470)
+...|++++|+..+++++... |....++..+|.++...|++++|...+++++...+.. ..++..+|.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 344444444444444444432 2334567789999999999999999999999887753 357889999
Q ss_pred HHhccCChHHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHH
Q psy16214 195 CLYYDDKMDLAVNHFQLLLKLAPD--HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKL 272 (470)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 272 (470)
++...|++++|+..+++++.+.+. .+..+... .....+.++...|++++|...+++++...|.+.......
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISN-------ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH-------HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH-------HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 999999999999999999886432 21111110 001125668899999999999999998776543333456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214 273 LHNRATVLFKMGKYNEAIADCTLALEKDPN------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 335 (470)
+..++.++...|++++|+..+++++...+. ...++..+|.++...|++++|...+++++.+.+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 788999999999999999999999887432 235888899999999999999999999998765
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.87 E-value=2e-21 Score=176.04 Aligned_cols=262 Identities=13% Similarity=0.077 Sum_probs=180.7
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214 22 KALKCYSEAISVCPNVAAYYGNRAACYMML---GMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL 98 (470)
Q Consensus 22 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 98 (470)
+|.+++.++-+.-+.....+ .++.. +++++|+..|+++ |.+|..+|++++|+.+|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 45566666666555432222 11222 2477777777776 55677788888888888877
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214 99 QELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSI 178 (470)
Q Consensus 99 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 178 (470)
+.+.+... +.. ....++..+|.++...|++++|+.+++++
T Consensus 64 l~~~~~~~--------------------------~~~--------------~~a~~~~~lg~~~~~~g~~~~A~~~~~~A 103 (292)
T 1qqe_A 64 ADYQKKAG--------------------------NED--------------EAGNTYVEAYKCFKSGGNSVNAVDSLENA 103 (292)
T ss_dssp HHHHHHTT--------------------------CHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhC--------------------------CHH--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 76432211 100 11235667888888888888888888888
Q ss_pred hhcCCCC------hHHHHHHHHHHhcc-CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16214 179 LATDKQN------PDAVFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEA 251 (470)
Q Consensus 179 l~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 251 (470)
+.+.|.. ..++..+|.++... |++++|+.+|++++.+.|....... ....+...|.++...|++++|
T Consensus 104 l~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~------~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL------SNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH------HHHHHHHHHHHHHHhCCHHHH
Confidence 8776643 45788999999996 9999999999999998875421100 001122339999999999999
Q ss_pred HHHHHHHHhhcccCccc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHH--HhCCHH
Q psy16214 252 FDIYTEALKIDARNINI---NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA-----LSRRCKCFH--ALGQYK 321 (470)
Q Consensus 252 ~~~~~~al~~~p~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~--~~g~~~ 321 (470)
+.+|++++.+.|++... ...++.++|.++..+|++++|+..|+++++++|+...+ +..++.++. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999886542 23478999999999999999999999999999987553 455666664 567899
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q psy16214 322 ECVIDAEKIYKMDNSRENHNFLEEAKRLL 350 (470)
Q Consensus 322 ~A~~~~~~a~~~~p~~~~~~~l~~~~~~~ 350 (470)
+|+..|++++.++|. ....+.+++..+
T Consensus 258 ~A~~~~~~~~~l~~~--~~~~~~~~k~~~ 284 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKW--KITILNKIKESI 284 (292)
T ss_dssp HHHHHHTTSSCCCHH--HHHHHHHHHHHH
T ss_pred HHHHHhccCCccHHH--HHHHHHHHHHHh
Confidence 999999999999874 233444444443
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.87 E-value=1.6e-19 Score=169.87 Aligned_cols=307 Identities=13% Similarity=0.004 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------H
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA-----AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF------S 72 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~ 72 (470)
++.+..+|..++..|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.|.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45678889999999999999999999999877542 367899999999999999999999999875543 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214 73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDN-----PAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ 147 (470)
Q Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 147 (470)
.++..+|.++...|++++|+..+++++.+.+.. +... .+ ....+..++..|++++|+..+++++..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~----~~-----~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE----FL-----VRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH----HH-----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH----HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 347889999999999999999999999865321 1111 00 123344578889999999999999998
Q ss_pred CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--ChHHHH-----HHHHHHhccCChHHHHHHHHHHHhh
Q psy16214 148 GVA-----SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ--NPDAVF-----VRGLCLYYDDKMDLAVNHFQLLLKL 215 (470)
Q Consensus 148 ~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~-----~la~~~~~~g~~~~A~~~~~~~l~~ 215 (470)
.+. ....+..+|.++...|++++|...+++++...+. .+..+. .++.++...|++++|...+++++..
T Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 765 2457888999999999999999999999876332 222222 3445578999999999999999987
Q ss_pred CCChHH----HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc--cchHHHHHHHHHHHHHcCCHHHH
Q psy16214 216 APDHAK----AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI--NINSKLLHNRATVLFKMGKYNEA 289 (470)
Q Consensus 216 ~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~la~~~~~~g~~~~A 289 (470)
.|.... .+.. .+.++...|++++|+..+++++...+... .....++..+|.++...|++++|
T Consensus 245 ~~~~~~~~~~~~~~------------la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 245 EFANNHFLQGQWRN------------IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp CCTTCGGGHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcchhhHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 765321 2222 38999999999999999999998765422 11235788999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChh
Q psy16214 290 IADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE 338 (470)
Q Consensus 290 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 338 (470)
...+++++.+.+.. .....+...| +.....+++++...|..+
T Consensus 313 ~~~l~~al~~~~~~-----g~~~~~~~~g--~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 313 QRVLLDALKLANRT-----GFISHFVIEG--EAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp HHHHHHHHHHHHHH-----CCCHHHHTTH--HHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhccc-----cHHHHHHHcc--HHHHHHHHHHHhCCCCch
Confidence 99999999875421 1112333333 677888899999888633
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=7.5e-21 Score=179.21 Aligned_cols=237 Identities=15% Similarity=0.033 Sum_probs=170.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------CH
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCP------NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR-------FS 72 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~ 72 (470)
.++.+|..++..|+|++|+.+|++++...+ ..+.+++.+|.++..+|++++|+..+++++++.+. .+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 456677777777777777777777776522 24567777777777777777777777777775332 24
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q psy16214 73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK 152 (470)
Q Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 152 (470)
.++..+|.++..+|++++|+..+++++++.+..... +...
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~----------------------------------------~~~~ 222 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND----------------------------------------RFIA 222 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------------------------HHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH----------------------------------------HHHH
Confidence 466677777777777777777777776643211100 0113
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh-----cCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCC-----hHHH
Q psy16214 153 TYKLMKAECLAHLNRLQEAQEIANSILA-----TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD-----HAKA 222 (470)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~ 222 (470)
.++.++|.++...|++++|+.++++++. .+|..+.++..+|.++...|++++|+.++++++.+.+. ....
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4677899999999999999999999998 77878889999999999999999999999999997543 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 223 KETYKRAKLLKAKKEEGNEKFVAGK---NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
...+ +.++...++ +.+|+..+++. ...|. ...++..+|.++...|++++|+.+++++++.
T Consensus 303 ~~~l------------~~ly~~~~~~~~~~~al~~~~~~-~~~~~----~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 303 FLFL------------QAVYKETVDERKIHDLLSYFEKK-NLHAY----IEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHH------------HHHHSSSCCHHHHHHHHHHHHHT-TCHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHH------------HHHHhCCCcHHHHHHHHHHHHhC-CChhH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2222 677777777 77777777762 12222 3456777888888888888888888887765
No 78
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=1.4e-20 Score=161.42 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=135.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHH----------------HHHHHHHcCChHHHHHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGN----------------RAACYMMLGMYTYALDDAKLAV 65 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------~a~~~~~~g~~~~A~~~~~~al 65 (470)
.+++.++..|..++..|+|++|+..|++++..+|+++.+++. +|.++...|++++|+..|++++
T Consensus 2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214 66 SLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM 145 (470)
Q Consensus 66 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 145 (470)
+++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++..++.++...+... ...+...+.+++
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~----------~~~~~~~~~~~~ 151 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE----------KKKLETDYKKLS 151 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH----------HHHHHHHHC---
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888887754443221 122333344433
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q psy16214 146 DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ 184 (470)
Q Consensus 146 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 184 (470)
...|. ...++.+|.++...|++++|+..|+++++++|+
T Consensus 152 ~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 152 SPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred CCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 22211 123444555566666666666666666666664
No 79
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=7e-21 Score=163.33 Aligned_cols=179 Identities=15% Similarity=0.124 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHH----------------HHHHHhccCChHHHHHHHHHHHh
Q psy16214 151 SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFV----------------RGLCLYYDDKMDLAVNHFQLLLK 214 (470)
Q Consensus 151 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~l~ 214 (470)
++..++..|..+...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556667777888888888888888888888887777777 99999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC--HHHHHHH
Q psy16214 215 LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK--YNEAIAD 292 (470)
Q Consensus 215 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~--~~~A~~~ 292 (470)
++|++..++..+ |.++...|++++|+..|+++++++|+ ++.++.++|.++...|+ ...+...
T Consensus 83 ~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 83 KAPNNVDCLEAC------------AEMQVCRGQEKDALRMYEKILQLEAD----NLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999988888 99999999999999999999999999 45679999999877764 4556777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy16214 293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEA 346 (470)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~ 346 (470)
+.+++...|. ..+++.+|.++..+|++++|+.+|+++++++|+.+....+.++
T Consensus 147 ~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 147 YKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp HC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred HHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777643332 3477889999999999999999999999999987666655554
No 80
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.87 E-value=4.5e-20 Score=160.46 Aligned_cols=190 Identities=12% Similarity=0.044 Sum_probs=160.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH---HH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSK---GL 75 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~ 75 (470)
.+++.++.+|..++..|+|++|+..|++++...|.+ ..+++.+|.+++..|++++|+..|+++++.+|+++. ++
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 367899999999999999999999999999998876 478999999999999999999999999999999864 89
Q ss_pred HHHHHHHHH------------------cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16214 76 IRQIKCNIA------------------LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTA 137 (470)
Q Consensus 76 ~~la~~~~~------------------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 137 (470)
+.+|.++.. .|++++|+..|+++++..|+++.++..+..+.......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~--------------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL--------------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH---------------
Confidence 999999886 57899999999999999999987765443332221111
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh---HHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214 138 MFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP---DAVFVRGLCLYYDDKMDLAVNHFQLLLK 214 (470)
Q Consensus 138 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~ 214 (470)
......+|.++...|++++|+..|+++++..|+++ ++++.+|.++..+|++++|+..++++..
T Consensus 147 --------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 --------------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp --------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 11235678889999999999999999999998876 6789999999999999999999998888
Q ss_pred hCCChH
Q psy16214 215 LAPDHA 220 (470)
Q Consensus 215 ~~p~~~ 220 (470)
..|++.
T Consensus 213 ~~~~~~ 218 (225)
T 2yhc_A 213 NSSNTL 218 (225)
T ss_dssp CCSCCC
T ss_pred hCCCch
Confidence 888764
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.87 E-value=1.3e-20 Score=170.77 Aligned_cols=219 Identities=16% Similarity=0.139 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChHHHH
Q psy16214 19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR------FSKGLIRQIKCNIALGDAPTAR 92 (470)
Q Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 92 (470)
++++|+.+|+++ |.+|...|++++|+..|++++++.+. .+.++..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888888887 66788999999999999999998532 2678999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc
Q psy16214 93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEA-NDYRTAMFYLDRAMDQGVAS------KTYKLMKAECLAHL 165 (470)
Q Consensus 93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~ 165 (470)
.+|++++++.|....... .+.. ....+..+... |++++|+.++++++.+.|.. ..++..+|.++...
T Consensus 98 ~~~~~Al~l~~~~g~~~~-~a~~-----~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRR-GANF-----KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp HHHHHHHHHHHHTTCHHH-HHHH-----HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHH-HHHH-----HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 999999998765432110 0111 12344456775 99999999999999998754 46788999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCChH-------HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214 166 NRLQEAQEIANSILATDKQNPD-------AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238 (470)
Q Consensus 166 ~~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 238 (470)
|++++|+..|++++...|.+.. ++..+|.++..+|++++|+.+|++++.++|+........ .....
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~-------~l~~l 244 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN-------FLKSL 244 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH-------HHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH-------HHHHH
Confidence 9999999999999999987654 578999999999999999999999999999876543221 00111
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHhhccc
Q psy16214 239 GNEKF--VAGKNQEAFDIYTEALKIDAR 264 (470)
Q Consensus 239 ~~~~~--~~~~~~~A~~~~~~al~~~p~ 264 (470)
+..+. ..+++++|+..|++++.++|.
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 33332 457799999999888888887
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=3.6e-20 Score=187.27 Aligned_cols=188 Identities=12% Similarity=0.007 Sum_probs=171.8
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--------hcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16214 66 SLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQ--------ELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTA 137 (470)
Q Consensus 66 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 137 (470)
.++|+++.+++..+ ...|++++|++.+++++ +.+|++..++..++.+ ++..|++++|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~------------~~~~g~~~~A 452 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRA------------LLDLGDVAKA 452 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHH------------HHHHTCHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHH------------HHhcCCHHHH
Confidence 35788888888777 78999999999999999 8999999988666555 7778999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC
Q psy16214 138 MFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP 217 (470)
Q Consensus 138 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 217 (470)
+..++++++.+|++..++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++ +..|+++++++|
T Consensus 453 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P 531 (681)
T 2pzi_A 453 TRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND 531 (681)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC
Q psy16214 218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK 285 (470)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~ 285 (470)
++..++..+ |.++...|++++|+..|+++++++|+ ...++.++|.++...++
T Consensus 532 ~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~l~P~----~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 532 GVISAAFGL------------ARARSAEGDRVGAVRTLDEVPPTSRH----FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCHHHHHHH------------HHHHHHTTCHHHHHHHHHTSCTTSTT----HHHHHHHHHHHTC----
T ss_pred chHHHHHHH------------HHHHHHcCCHHHHHHHHHhhcccCcc----cHHHHHHHHHHHHccCC
Confidence 999999888 99999999999999999999999999 67789999999987666
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.85 E-value=1.6e-19 Score=170.09 Aligned_cols=308 Identities=12% Similarity=0.020 Sum_probs=224.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCC---chhH--HHHHHHHH--HHHcCChHHHH---------HHHHHHHhcCCC
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAISVCP---NVAA--YYGNRAAC--YMMLGMYTYAL---------DDAKLAVSLDPR 70 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~--~~~~~a~~--~~~~g~~~~A~---------~~~~~al~~~p~ 70 (470)
..+.=..+...+++++|..+++++...-+ .+.. .++.+-.. ....+.+..+. ..++++-.....
T Consensus 15 ~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 94 (378)
T 3q15_A 15 KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK 94 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC
Confidence 33333445889999999999998755322 1222 23332221 22223333333 444443221111
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214 71 -----FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM 145 (470)
Q Consensus 71 -----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 145 (470)
....++.+|..+...|++++|+..|++++++.+..... ...+.+ ....|..+...|+++.|+.++.+++
T Consensus 95 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~a~~-----~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD-IEKAEF-----HFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH-HHHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh-HHHHHH-----HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 12256788999999999999999999999875432211 111112 2445566888999999999999999
Q ss_pred HhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC------ChHHHHHHHHHHhccCChHHHHHHHHHH
Q psy16214 146 DQGVA-------SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ------NPDAVFVRGLCLYYDDKMDLAVNHFQLL 212 (470)
Q Consensus 146 ~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 212 (470)
...+. ...++..+|.++...|++++|+..+++++...+. ...++.++|.++...|++++|+.+++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 87543 2456788999999999999999999999986432 2457899999999999999999999999
Q ss_pred Hh-----hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCC
Q psy16214 213 LK-----LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGK 285 (470)
Q Consensus 213 l~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~ 285 (470)
+. .+|....++..+ |.++...|++++|+.++++++.+.+. ++. ....+..++.++...++
T Consensus 249 l~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 249 AKVSREKVPDLLPKVLFGL------------SWTLCKAGQTQKAFQFIEEGLDHITARSHKF-YKELFLFLQAVYKETVD 315 (378)
T ss_dssp HHHHHHHCGGGHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC-HHHHHHHHHHHHSSSCC
T ss_pred HHHHHhhCChhHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhCCCc
Confidence 99 667666666666 99999999999999999999988654 222 23456778888888898
Q ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 286 ---YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 286 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
+.+|+..+++ ....|....++..+|.+|...|++++|..+|++++++.
T Consensus 316 ~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 316 ERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8888888877 22334556788899999999999999999999999764
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=6.6e-20 Score=153.85 Aligned_cols=170 Identities=19% Similarity=0.226 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q psy16214 152 KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKL 231 (470)
Q Consensus 152 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 231 (470)
..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----- 82 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL----- 82 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-----
Confidence 456788999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRC 311 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 311 (470)
|.++...|++++|+..+++++...|.+ ..++..+|.++...|++++|+..+++++...|.++.++..+|
T Consensus 83 -------a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 83 -------GLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp -------HHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -------HHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 999999999999999999999999984 567999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCh
Q psy16214 312 KCFHALGQYKECVIDAEKIYKMDNSR 337 (470)
Q Consensus 312 ~~~~~~g~~~~A~~~~~~a~~~~p~~ 337 (470)
.++...|++++|+..+++++++.|+.
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999998863
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=9.1e-20 Score=152.97 Aligned_cols=171 Identities=14% Similarity=0.065 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA 163 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 163 (470)
..|++++|+..+++++...|.++ .++..+|.++.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~----------------------------------------------~~~~~~a~~~~ 121 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINF----------------------------------------------NVRFRLGVALD 121 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCH----------------------------------------------HHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhH----------------------------------------------HHHHHHHHHHH
Confidence 77777777766666666655544 44455666666
Q ss_pred HcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH
Q psy16214 164 HLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220 (470)
Q Consensus 164 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 220 (470)
..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++.
T Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 666666666666666666666666666666666666666666666666666666554
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.85 E-value=5e-21 Score=154.85 Aligned_cols=145 Identities=12% Similarity=-0.018 Sum_probs=109.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q psy16214 10 DGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP 89 (470)
Q Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 89 (470)
+|..+...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+..|+++++++|+++.+|..+|.++..+|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy16214 90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFY-LDRAMDQGVASKTYKLMKAECLAHLN 166 (470)
Q Consensus 90 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~-~~~~l~~~p~~~~~~~~~a~~~~~~~ 166 (470)
+|+..|+++++++|+++.++..++.+ +...+++++|... ++++++++|+++.++..++.++...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAEL------------LCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH------------HHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 99999999999888877765444443 3333444333322 34444444444444444444444433
No 87
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.85 E-value=3.6e-18 Score=153.87 Aligned_cols=195 Identities=14% Similarity=0.119 Sum_probs=159.4
Q ss_pred HHHhcCCHH-HHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 13 TQYKLKQYS-KALKCYSEAISVCPNVAAYYGNRAACYMMLGM----------YTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 13 ~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
.....|+++ +|+.++..++..+|++..+|+.++.++..++. +++++..+..++..+|.+..+|...+.+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344677776 79999999999999999999999999988776 6899999999999999999999999999
Q ss_pred HHHcCC--hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214 82 NIALGD--APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAND-YRTAMFYLDRAMDQGVASKTYKLMK 158 (470)
Q Consensus 82 ~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~ 158 (470)
+..+++ +++++.++.++++.+|.|..+|...+.+.. ..+. +++++.++++++..+|.+..+|..+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~------------~l~~~~~eel~~~~~~I~~~p~N~SAW~~R 185 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA------------QAAVAPAEELAFTDSLITRNFSNYSSWHYR 185 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------HTTCCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------HhCcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999984 899999999999999999999987777633 2344 5888999999999999999999999
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc-C----------ChHHHHHHHHHHH
Q psy16214 159 AECLAHL--------------NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-D----------KMDLAVNHFQLLL 213 (470)
Q Consensus 159 a~~~~~~--------------~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g----------~~~~A~~~~~~~l 213 (470)
+.++... +.++++++++.+++..+|++..+|+.+..++... | .++++++.+.+++
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 9888877 5588899999999999999999987554444433 3 3455556666666
Q ss_pred hhCCCh
Q psy16214 214 KLAPDH 219 (470)
Q Consensus 214 ~~~p~~ 219 (470)
+..|++
T Consensus 266 e~~pd~ 271 (331)
T 3dss_A 266 ELEPEN 271 (331)
T ss_dssp HHCTTC
T ss_pred hhCccc
Confidence 666655
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=7.8e-21 Score=153.72 Aligned_cols=146 Identities=12% Similarity=0.088 Sum_probs=111.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q psy16214 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237 (470)
Q Consensus 158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 237 (470)
+|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~l----------- 71 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFL----------- 71 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-----------
Confidence 566677777788888888888887777777788888888888888888888888888888888777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIAD-CTLALEKDPNYLKALSRRCKCFHA 316 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~ 316 (470)
|.++...|++++|+..|+++++++|+ .+.++.++|.++..+|++++|... ++++++++|+++.++..++.++..
T Consensus 72 -g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 72 -GLLYELEENTDKAVECYRRSVELNPT----QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred -HHHHHHcCchHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 88888888888888888888888887 345678888888888887766554 577888888888888877877777
Q ss_pred hCC
Q psy16214 317 LGQ 319 (470)
Q Consensus 317 ~g~ 319 (470)
.|+
T Consensus 147 ~G~ 149 (150)
T 4ga2_A 147 EGE 149 (150)
T ss_dssp CCC
T ss_pred hCc
Confidence 664
No 89
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.83 E-value=1.7e-19 Score=140.98 Aligned_cols=113 Identities=32% Similarity=0.537 Sum_probs=109.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.++.+.++|+.++..|+|++|+..|+++++.+|.++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
..+|++++|+..|+++++++|++..++..++.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999998777665
No 90
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.8e-17 Score=170.11 Aligned_cols=308 Identities=13% Similarity=0.078 Sum_probs=229.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214 9 EDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA 88 (470)
Q Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 88 (470)
..|..+...|.|++|..+|+++- . ... .+...+...+++++|++.++++ +.+.+|+.+|.++...|++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~--~--~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD--V--NTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC--C--HHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCH
Confidence 35999999999999999999973 1 111 1233344889999999999866 5689999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy16214 89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL 168 (470)
Q Consensus 89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 168 (470)
++|+..|.++ +++..+..++. .+.+.|++++|+.+|..+.+..+.. .+...+|.+|.+++++
T Consensus 1122 kEAIdsYiKA-----dD~say~eVa~------------~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1122 KEAIDSYIKA-----DDPSSYMEVVQ------------AANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHHHHhc-----CChHHHHHHHH------------HHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCH
Confidence 9999999886 66777655444 4777899999999999999887442 2333589999999998
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248 (470)
Q Consensus 169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (470)
++ ++.|. ..+ +...+..+|..+...|++++|+.+|.++ ..|..+ +.++.+.|++
T Consensus 1184 ee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rL------------A~tLvkLge~ 1237 (1630)
T 1xi4_A 1184 AE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRL------------ASTLVHLGEY 1237 (1630)
T ss_pred HH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHH------------HHHHHHhCCH
Confidence 85 44442 133 4466778999999999999999999986 234444 9999999999
Q ss_pred HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16214 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328 (470)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 328 (470)
++|++.++++. +..+|...+.++...|+|..|..+... +..+ ++.+..++..|...|.+++|+..++
T Consensus 1238 q~AIEaarKA~---------n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1238 QAAVDGARKAN---------STRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHHHHHHHhC---------CHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999982 245799999999999999999987764 4444 4556688999999999999999999
Q ss_pred HHHhcCCC-hhHHHHHHHHHHHhhcccc----cchhhhccCCCCCCHHHHHHHHHHHHHHcC
Q psy16214 329 KIYKMDNS-RENHNFLEEAKRLLKRSEV----KDYYKILGVTKNASSDDIKKAYRKRALVHH 385 (470)
Q Consensus 329 ~a~~~~p~-~~~~~~l~~~~~~~~~~~~----~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~ 385 (470)
+++.++|. ......|..+....+..+. +-|.+...+++-...-+-...|.++...|+
T Consensus 1305 ~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A 1305 AALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred HHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHH
Confidence 99999976 4445555555544443332 233444444443333344444666666665
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=1.5e-19 Score=162.57 Aligned_cols=224 Identities=17% Similarity=0.100 Sum_probs=178.0
Q ss_pred HhcCCHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHH
Q psy16214 15 YKLKQYSKALKCYSEAISV--------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--------DPRFSKGLIRQ 78 (470)
Q Consensus 15 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 78 (470)
...|++++|+.+|+++++. +|..+.++..+|.++...|++++|+..+++++++ +|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888888873 3667899999999999999999999999999987 35667899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---
Q psy16214 79 IKCNIALGDAPTARSNLKALQELD--------PDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ--- 147 (470)
Q Consensus 79 a~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--- 147 (470)
|.++...|++++|+..+.+++.+. |....++. ..+..++..|++++|+.++++++..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN------------NLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH------------HHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999873 33333443 3444578889999999999999998
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc---------CCCChHHHHHHHHHHhccCChHHH------HH
Q psy16214 148 -----GVASKTYKLMKAECLAHLNRLQEAQEIANSILAT---------DKQNPDAVFVRGLCLYYDDKMDLA------VN 207 (470)
Q Consensus 148 -----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A------~~ 207 (470)
.|....++..+|.++...|++++|+..+++++.. .+.....+..++......+....+ ..
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 6777788999999999999999999999999986 555667788888777765554433 33
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214 208 HFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262 (470)
Q Consensus 208 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 262 (470)
.++.+....|....++..+ |.++...|++++|+.+++++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 240 WYKACKVDSPTVNTTLRSL------------GALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ---CCCCCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3333333445555555555 999999999999999999998753
No 92
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.82 E-value=1.7e-17 Score=149.51 Aligned_cols=239 Identities=12% Similarity=0.015 Sum_probs=183.5
Q ss_pred HHHcCChH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214 48 YMMLGMYT-YALDDAKLAVSLDPRFSKGLIRQIKCNIALGD----------APTARSNLKALQELDPDNPAIAQESKALE 116 (470)
Q Consensus 48 ~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 116 (470)
....|.+. +|+..+.+++.++|++..+|...+.++..++. +++++..+..++..+|.+..+|...+.+.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34566665 89999999999999999999999999988876 68999999999999999999998888774
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214 117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR-LQEAQEIANSILATDKQNPDAVFVRGLC 195 (470)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~ 195 (470)
... ....+++++..++++++.+|.+..+|..++.++...|. ++++++++.+++..+|.+..+|..++.+
T Consensus 119 ~~l----------~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~l 188 (331)
T 3dss_A 119 SRL----------PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 188 (331)
T ss_dssp HHC----------SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred hcc----------CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 321 11258999999999999999999999999999999999 6999999999999999999999999999
Q ss_pred Hhcc--------------CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q psy16214 196 LYYD--------------DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA-GKNQEAFDIYTEALK 260 (470)
Q Consensus 196 ~~~~--------------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~ 260 (470)
+... +.+++++.++.+++..+|++..+|..+ ..++... |.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~------------r~ll~~~~~~------------- 243 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH------------RWLLGAGSGR------------- 243 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHSSSCG-------------
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHhccCc-------------
Confidence 8776 458899999999999999999999866 3333222 10
Q ss_pred hcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhcCCC
Q psy16214 261 IDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFH---ALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 261 ~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+. . + -...+.++++++.+++++++.|++..++..++.+.. ..+..+++..++.+++++||-
T Consensus 244 --~~-~----------~--~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 244 --CE-L----------S--VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp --GG-C----------C--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred --cc-c----------c--hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 00 0 0 011233455666666666666665444433333222 235566666666666666665
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.82 E-value=1.5e-18 Score=150.79 Aligned_cols=187 Identities=13% Similarity=0.119 Sum_probs=124.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH---HHHHHHHH
Q psy16214 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASK---TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD---AVFVRGLC 195 (470)
Q Consensus 122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~ 195 (470)
+..|..++..|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++.+|.+
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 4445555555555555555555555555432 34555555555555555555555555555555443 45555555
Q ss_pred HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccch------
Q psy16214 196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ------ 269 (470)
Q Consensus 196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------ 269 (470)
+...+.. .+. .+ ...+..+...|++++|+..|+++++..|+++...
T Consensus 88 ~~~~~~~-----~~~-----------~~------------~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 88 NMALDDS-----ALQ-----------GF------------FGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL 139 (225)
T ss_dssp HHHHHC------------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred HHhhhhh-----hhh-----------hh------------hccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 5443321 000 01 1115555668899999999999999999976431
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 270 -------SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL---KALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 270 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
......+|.++...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..++++....|+
T Consensus 140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 11225789999999999999999999999999986 78999999999999999999999999999886
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=7e-19 Score=158.16 Aligned_cols=190 Identities=19% Similarity=0.136 Sum_probs=162.6
Q ss_pred HhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------CCCChHHHHHH
Q psy16214 129 FEANDYRTAMFYLDRAMDQ--------GVASKTYKLMKAECLAHLNRLQEAQEIANSILAT--------DKQNPDAVFVR 192 (470)
Q Consensus 129 ~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l 192 (470)
...+++++|+..++++++. .|....++..+|.++...|++++|+..+++++.. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777777763 3566788999999999999999999999999987 35567789999
Q ss_pred HHHHhccCChHHHHHHHHHHHhh--------CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---
Q psy16214 193 GLCLYYDDKMDLAVNHFQLLLKL--------APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI--- 261 (470)
Q Consensus 193 a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 261 (470)
|.++...|++++|+.++++++.. +|....++..+ |.++...|++++|+.++++++..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNL------------ALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 35455555555 99999999999999999999988
Q ss_pred -----cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------------
Q psy16214 262 -----DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK------------------------------------- 299 (470)
Q Consensus 262 -----~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------------------------- 299 (470)
.|. ...++..+|.++..+|++++|+.++++++.+
T Consensus 160 ~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (283)
T 3edt_B 160 RLGPDDPN----VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235 (283)
T ss_dssp HSCTTCHH----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----
T ss_pred hcCCCCHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 343 5788999999999999999999999999986
Q ss_pred ------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 300 ------------DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 300 ------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
.|..+.++..+|.++..+|++++|+.+|++++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 24456789999999999999999999999999864
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=5.3e-19 Score=147.31 Aligned_cols=169 Identities=11% Similarity=-0.017 Sum_probs=139.1
Q ss_pred CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHH
Q psy16214 34 CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESK 113 (470)
Q Consensus 34 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 113 (470)
+|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...| ++.....++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4455567788888888888888888888888888888888888888888888999999998888888888 766544333
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC--hHHHHH
Q psy16214 114 ALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN--PDAVFV 191 (470)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~ 191 (470)
.+.. ...+....|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|+. +.++..
T Consensus 81 ~~~~-----------~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~ 149 (176)
T 2r5s_A 81 KLEL-----------HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKT 149 (176)
T ss_dssp HHHH-----------HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred HHHH-----------HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence 3211 111222347889999999999999999999999999999999999999999999976 569999
Q ss_pred HHHHHhccCChHHHHHHHHHHHh
Q psy16214 192 RGLCLYYDDKMDLAVNHFQLLLK 214 (470)
Q Consensus 192 la~~~~~~g~~~~A~~~~~~~l~ 214 (470)
+|.++...|+.++|+..|++++.
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999999999875
No 96
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=4.3e-17 Score=167.35 Aligned_cols=269 Identities=13% Similarity=0.080 Sum_probs=184.8
Q ss_pred hcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16214 16 KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL 95 (470)
Q Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 95 (470)
..++|++|+++++++ +.+.+|+.+|.++...|++++|+..|.++ +++..+..+|.++.++|++++|+++|
T Consensus 1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 678888888888865 56889999999999999999999999775 78889999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHH----------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 96 KALQELDPDNPAIAQESKALETMAK----------------NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA 159 (470)
Q Consensus 96 ~~~l~~~p~~~~~~~~l~~~~~~~~----------------~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 159 (470)
..+.+..++. .+...++..+...+ ....|..++..|+|++|+.+|.++ ..|..++
T Consensus 1158 ~mArk~~~e~-~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA 1228 (1630)
T 1xi4_A 1158 QMARKKARES-YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA 1228 (1630)
T ss_pred HHHHhhcccc-cccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHH
Confidence 9988877442 11112333222211 122333344445555555555543 2444455
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
.++.++|++++|++.++++ .+..+|...+.++...|++..|..+... +..+|+.. .+.+
T Consensus 1229 ~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deL---------------eeli 1287 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL---------------EELI 1287 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHH---------------HHHH
Confidence 5555555555555555554 2345555555555555555555554442 32333222 2237
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHH
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK--MGKYNEAIADCTLALEKDP-----NYLKALSRRCK 312 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~ 312 (470)
..|...|.+++|+.++++++.+++. +...+..+|.++.+ -++..++++.|...+.+.| .+...|..+..
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL~Lera----H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAALGLERA----HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHhccChh----HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHH
Confidence 8889999999999999999999988 45568777777765 4577888999998888877 67889999999
Q ss_pred HHHHhCCHHHHHHHHH
Q psy16214 313 CFHALGQYKECVIDAE 328 (470)
Q Consensus 313 ~~~~~g~~~~A~~~~~ 328 (470)
+|.+-|+++.|+..+-
T Consensus 1364 LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHhcccHHHHHHHHH
Confidence 9999999999994433
No 97
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.80 E-value=3.2e-17 Score=148.25 Aligned_cols=187 Identities=9% Similarity=-0.089 Sum_probs=163.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-Ch
Q psy16214 12 NTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL-G-DA 88 (470)
Q Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~ 88 (470)
......+..++|+.+++++|..+|++..+|+.++.++..++ .+++++..++.++..+|++..+|..++.++..+ + ++
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 33444555679999999999999999999999999999999 599999999999999999999999999999998 8 99
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Q psy16214 89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR- 167 (470)
Q Consensus 89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~- 167 (470)
++++..+.++++.+|.|..+|...+.+....+.+..+ ....+.+++..++++++.+|.+..+|..++.++...++
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~----~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI----SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc----chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999988886665543210 01123588999999999999999999999999999887
Q ss_pred ------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCCh
Q psy16214 168 ------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKM 202 (470)
Q Consensus 168 ------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 202 (470)
++++++++.+++..+|++..+|+.+..++...|..
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 79999999999999999999999988888776664
No 98
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.80 E-value=2.1e-17 Score=149.46 Aligned_cols=253 Identities=10% Similarity=-0.044 Sum_probs=193.6
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG-DAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
...++..+..+....+..++|+..+.+++.++|++..+|..++.++..+| .+++++..+..++..+|++..+|...+.+
T Consensus 53 y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wl 132 (349)
T 3q7a_A 53 YKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 35556666666666777889999999999999999999999999999999 59999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHhhcCCCCh
Q psy16214 116 ETMAKNFEGASKAFEAN-DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ--------EAQEIANSILATDKQNP 186 (470)
Q Consensus 116 ~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~--------~A~~~~~~~l~~~p~~~ 186 (470)
.... .+ ++++++..++++++.+|.+..+|..++.++...+.++ ++++.+.++++.+|.+.
T Consensus 133 L~~l-----------~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~ 201 (349)
T 3q7a_A 133 LDRI-----------SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN 201 (349)
T ss_dssp HHHH-----------CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHh-----------cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH
Confidence 4332 13 6789999999999999999999999999999998888 99999999999999999
Q ss_pred HHHHHHHHHHhccCC-------hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----------
Q psy16214 187 DAVFVRGLCLYYDDK-------MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQ---------- 249 (470)
Q Consensus 187 ~~~~~la~~~~~~g~-------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 249 (470)
.+|..++.++...+. +++++.++.+++..+|++..+|..+ ..++...|+..
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Yl------------r~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYL------------RGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCCSGGGHHHHGGG
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHhcCCCccccccccccc
Confidence 999999999999887 6899999999999999999999887 55555444320
Q ss_pred ------HH-HHHHHHHHhhcccC-----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHH
Q psy16214 250 ------EA-FDIYTEALKIDARN-----ININSKLLHNRATVLFKMGKYNEAIADCTLAL-EKDPNYLKALSRRCK 312 (470)
Q Consensus 250 ------~A-~~~~~~al~~~p~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~ 312 (470)
.. -...+.++...... ....+.++..++.+|...|+.++|++.|+... +.+|-....|..++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 00 01111111111110 01134556666666666666666666666654 445555555544443
No 99
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=5.1e-20 Score=170.14 Aligned_cols=270 Identities=13% Similarity=0.058 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
++.|..+|..+...|++++|++.|.++ .++..+...+.++...|++++|+.+++.+++..++ +.+...++.+|.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~ 105 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence 456777777777777777777777653 34556777777777777777777777777664333 566667777777
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA 163 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 163 (470)
++|++.++.+.++. |+ ...+..+|.. ++..|.|++|..+|.++ ..+..+|.++.
T Consensus 106 Klg~l~e~e~f~~~-----pn-~~a~~~IGd~------------~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~ 159 (449)
T 1b89_A 106 KTNRLAELEEFING-----PN-NAHIQQVGDR------------CYDEKMYDAAKLLYNNV--------SNFGRLASTLV 159 (449)
T ss_dssp ---CHHHHTTTTTC-----C-----------------------------CTTTHHHHHHHT--------TCHHHHHHHHH
T ss_pred HhCCHHHHHHHHcC-----Cc-HHHHHHHHHH------------HHHcCCHHHHHHHHHHh--------hhHHHHHHHHH
Confidence 77777776666542 32 2344444433 66778888888888866 36778899999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 164 HLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243 (470)
Q Consensus 164 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (470)
++|++++|++.+.++ +++.+|.....++...|+++.|..+... +..+|+... .+ ...|.
T Consensus 160 ~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~---~l------------v~~Ye 218 (449)
T 1b89_A 160 HLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE---EL------------INYYQ 218 (449)
T ss_dssp TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHH---HH------------HHHHH
T ss_pred HhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHH---HH------------HHHHH
Confidence 999999999999988 4688899988999999999999777665 335555422 23 77889
Q ss_pred hcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHH
Q psy16214 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK--MGKYNEAIADCTLALEKDP-----NYLKALSRRCKCFHA 316 (470)
Q Consensus 244 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~ 316 (470)
+.|++++|+.++++++.+++. ...++..+|.+|.+ .++..+.++.|...+.+.| .++..|..+..+|..
T Consensus 219 k~G~~eEai~lLe~aL~le~a----h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERA----HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTC----CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhCCcHH----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999877 45668888887765 4567778888887777777 778889999999999
Q ss_pred hCCHHHHHHHHHHH
Q psy16214 317 LGQYKECVIDAEKI 330 (470)
Q Consensus 317 ~g~~~~A~~~~~~a 330 (470)
-++++.|+...-..
T Consensus 295 ~~e~d~A~~tm~~h 308 (449)
T 1b89_A 295 YEEYDNAIITMMNH 308 (449)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred hchHHHHHHHHHhC
Confidence 99999998755443
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=4e-19 Score=148.03 Aligned_cols=167 Identities=13% Similarity=0.079 Sum_probs=141.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHH
Q psy16214 149 VASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKR 228 (470)
Q Consensus 149 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 228 (470)
|.....++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..+++++...| ++......
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~-- 79 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLI-- 79 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHH--
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHH--
Confidence 444556778999999999999999999999999999999999999999999999999999999999999 66554433
Q ss_pred HHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH
Q psy16214 229 AKLLKAKKEEGNEK-FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY--LK 305 (470)
Q Consensus 229 ~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 305 (470)
+.+. ...+...+|+..+++++..+|++ ..+++.+|.++...|++++|+..|+++++.+|+. +.
T Consensus 80 ----------~~~~~~~~~~~~~a~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 145 (176)
T 2r5s_A 80 ----------AKLELHQQAAESPELKRLEQELAANPDN----FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE 145 (176)
T ss_dssp ----------HHHHHHHHHTSCHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH
T ss_pred ----------HHHHHHhhcccchHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH
Confidence 2221 12223345899999999999994 5679999999999999999999999999999876 66
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 306 ALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 306 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
++..+|.++..+|+.++|+..|++++.
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999999999875
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.79 E-value=3.9e-18 Score=153.86 Aligned_cols=169 Identities=12% Similarity=0.020 Sum_probs=157.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHH
Q psy16214 148 GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYK 227 (470)
Q Consensus 148 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 227 (470)
.|.+...+..+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+........
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~- 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA- 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH-
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH-
Confidence 4888999999999999999999999999999999999999999999999999999999999999999999766554444
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH
Q psy16214 228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY--LK 305 (470)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 305 (470)
+..+...++.++|+..+++++..+|+ ...+++++|.++...|++++|+..|.++++.+|++ ..
T Consensus 192 -----------~~~l~~~~~~~~a~~~l~~al~~~P~----~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 192 -----------QIELLXQAADTPEIQQLQQQVAENPE----DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp -----------HHHHHHHHTSCHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred -----------HHHHHhhcccCccHHHHHHHHhcCCc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 66778888999999999999999999 45679999999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 306 ALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 306 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
++..++.++..+|+.++|+..|++++.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999999875
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=2.1e-18 Score=134.71 Aligned_cols=103 Identities=29% Similarity=0.495 Sum_probs=64.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 318 (470)
|..+++.|++++|+..|+++++++|. .+.+|.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRDPE----NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 66666666666666666666666666 33456666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCC-hhHHHHHHH
Q psy16214 319 QYKECVIDAEKIYKMDNS-RENHNFLEE 345 (470)
Q Consensus 319 ~~~~A~~~~~~a~~~~p~-~~~~~~l~~ 345 (470)
++++|+..|+++++++|+ .++...|..
T Consensus 96 ~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 96 EWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 666666666666666665 444444443
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.78 E-value=8.2e-19 Score=141.01 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=111.6
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCH
Q psy16214 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY 286 (470)
Q Consensus 207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~ 286 (470)
..+++++.++|++..++..+ |.+++..|++++|+..|++++.++|. ++.+|.++|.++..+|++
T Consensus 23 ~~l~~al~l~p~~~~~~~~l------------g~~~~~~g~~~eA~~~~~~al~~~P~----~~~~~~~lg~~~~~~g~~ 86 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSY------------AYDFYNKGRIEEAEVFFRFLCIYDFY----NVDYIMGLAAIYQIKEQF 86 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHhCCCHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHccH
Confidence 44667788999999998888 99999999999999999999999999 456799999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHH
Q psy16214 287 NEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFL 343 (470)
Q Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l 343 (470)
++|+..|+++++++|+++.+++++|.+|..+|++++|+..|++++++.|+++.....
T Consensus 87 ~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A 143 (151)
T 3gyz_A 87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143 (151)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987644433
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.78 E-value=1.3e-17 Score=150.45 Aligned_cols=169 Identities=17% Similarity=0.046 Sum_probs=154.5
Q ss_pred CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHH
Q psy16214 34 CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESK 113 (470)
Q Consensus 34 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 113 (470)
-|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+.....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~---- 188 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG---- 188 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH----
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH----
Confidence 4889999999999999999999999999999999999999999999999999999999999999999999543332
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC--hHHHHH
Q psy16214 114 ALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN--PDAVFV 191 (470)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~ 191 (470)
...+..+...++.+.|+..+++++..+|++..+++.+|.++...|++++|+..|.++++.+|++ ..++..
T Consensus 189 --------~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 189 --------LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp --------HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred --------HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 2223335566778889999999999999999999999999999999999999999999999998 889999
Q ss_pred HHHHHhccCChHHHHHHHHHHHh
Q psy16214 192 RGLCLYYDDKMDLAVNHFQLLLK 214 (470)
Q Consensus 192 la~~~~~~g~~~~A~~~~~~~l~ 214 (470)
++.++...|+.++|+..|++++.
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999875
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.78 E-value=5.5e-18 Score=154.62 Aligned_cols=217 Identities=14% Similarity=0.032 Sum_probs=150.5
Q ss_pred HhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH
Q psy16214 15 YKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMM-LGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARS 93 (470)
Q Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 93 (470)
+..|++++|.++++++.+..+.. ++. .+++++|+..|.++ +.+|...|++++|+.
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHH
Confidence 34678888888888888766542 112 47888888888775 567788888888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy16214 94 NLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQE 173 (470)
Q Consensus 94 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 173 (470)
+|.+++.+.+.. ++...+ ..++..+|.++...|++++|+.
T Consensus 58 ~~~~al~~~~~~--------------------------~~~~~~--------------a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 58 AYLQEAEAHANN--------------------------RSLFHA--------------AKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp HHHHHHHHHHHT--------------------------TCHHHH--------------HHHHHHHHHHHHHTTCGGGGHH
T ss_pred HHHHHHHHHHHc--------------------------CCHHHH--------------HHHHHHHHHHHHhCCCHHHHHH
Confidence 888887754321 111111 2345567888888888888888
Q ss_pred HHHHHhhcCCCC------hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16214 174 IANSILATDKQN------PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGK 247 (470)
Q Consensus 174 ~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (470)
+|++++.+.+.. ..++..+|.++.. |++++|+.+|++++.+.|...... .....+.+.|.++...|+
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~lg~~~~~~g~ 170 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR------QAAELIGKASRLLVRQQK 170 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHcCC
Confidence 888888764322 3567788888888 888888888888888765431110 011122333888888888
Q ss_pred HHHHHHHHHHHHhhcccCcc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16214 248 NQEAFDIYTEALKIDARNIN--INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303 (470)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (470)
+++|+.+|++++.+.|.+.. ....++..+|.++..+|++++|+.+|++++ ++|..
T Consensus 171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 88888888888887765432 123467777888888888888888888888 87765
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.77 E-value=1.6e-17 Score=151.52 Aligned_cols=208 Identities=14% Similarity=0.096 Sum_probs=164.7
Q ss_pred cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214 85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE-ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA 163 (470)
Q Consensus 85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 163 (470)
.|++++|.++++++.+..+.. ++. .++++.|+..|.++ +.++.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------------------~~~~~~~~~~A~~~~~~a--------------~~~~~ 47 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------------------FMKWKPDYDSAASEYAKA--------------AVAFK 47 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------------------SSSCSCCHHHHHHHHHHH--------------HHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------------------ccCCCCCHHHHHHHHHHH--------------HHHHH
Confidence 466777888887777655431 112 46788888777764 56788
Q ss_pred HcCCHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q psy16214 164 HLNRLQEAQEIANSILATDKQN------PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237 (470)
Q Consensus 164 ~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 237 (470)
..|++++|+..+.+++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+....... ....+.+
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~------~a~~~~~ 121 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT------AAMALDR 121 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH------HHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHH
Confidence 8999999999999998876533 458889999999999999999999999987543221110 1122234
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccCc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q psy16214 238 EGNEKFVAGKNQEAFDIYTEALKIDARNI--NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY------LKALSR 309 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 309 (470)
.|.++.. |++++|+.+|++++.+.|... .....++.++|.++..+|++++|+.+|++++.+.|.+ ..++..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 4999988 999999999999999887532 2236789999999999999999999999999986544 357889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 310 RCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 310 la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+|.++..+|++++|+.+|++++ ++|+
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 9999999999999999999999 9996
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.77 E-value=1.3e-17 Score=165.79 Aligned_cols=165 Identities=13% Similarity=0.031 Sum_probs=138.1
Q ss_pred cCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy16214 17 LKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK 96 (470)
Q Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (470)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..+|.++..+|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHH
Q psy16214 97 ALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL---NRLQEAQE 173 (470)
Q Consensus 97 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~---~~~~~A~~ 173 (470)
++++++|++..++..++.+ +...|++++|+..++++++.+|++..++..++.++... |++++|+.
T Consensus 82 ~al~~~p~~~~~~~~la~~------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHA------------LEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 9999999999888666665 67789999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhcCCCChHHHHHHH
Q psy16214 174 IANSILATDKQNPDAVFVRG 193 (470)
Q Consensus 174 ~~~~~l~~~p~~~~~~~~la 193 (470)
.++++++.+|.+...+..++
T Consensus 150 ~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 150 QVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHhcCCcccChHHHhC
Confidence 99999999999988887776
No 108
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.76 E-value=8.5e-18 Score=147.05 Aligned_cols=206 Identities=9% Similarity=-0.069 Sum_probs=176.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHhhcCCCChH-------
Q psy16214 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK-------AECLAHLNRLQEAQEIANSILATDKQNPD------- 187 (470)
Q Consensus 122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------- 187 (470)
+..+.-+ ..+++..|...|.+++..+|....+|..+ +.++...++..+++..+.+.+.+.|....
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 4555554 57999999999999999999999999999 89999999999999999999998776533
Q ss_pred --------------HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy16214 188 --------------AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFD 253 (470)
Q Consensus 188 --------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 253 (470)
+...++.++...|++++|...|..++...|++. ....+ |.++++.++|++|+.
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~------------a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMK------------AVVYGAAERWTDVID 156 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHH------------HHHHHHTTCHHHHHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHH------------HHHHHHcCCHHHHHH
Confidence 445588999999999999999999999999887 66666 999999999999999
Q ss_pred HHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214 254 IYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD--PN-YLKALSRRCKCFHALGQYKECVIDAEKI 330 (470)
Q Consensus 254 ~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 330 (470)
.++.++...+ +.....+++++|.++..+|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|+++
T Consensus 157 ~l~~a~~~~d--~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 157 QVKSAGKWPD--KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHTTGGGCSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhhccCC--cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9997766431 11124689999999999999999999999998654 65 6789999999999999999999999999
Q ss_pred HhcCCChhHHHHH
Q psy16214 331 YKMDNSRENHNFL 343 (470)
Q Consensus 331 ~~~~p~~~~~~~l 343 (470)
+..+|+..+...|
T Consensus 235 ~a~~P~~~~~~aL 247 (282)
T 4f3v_A 235 QTTHPEPKVAAAL 247 (282)
T ss_dssp HHHSCCHHHHHHH
T ss_pred HhcCCcHHHHHHH
Confidence 9999973333333
No 109
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=5.2e-19 Score=163.45 Aligned_cols=261 Identities=11% Similarity=0.016 Sum_probs=121.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214 13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR 92 (470)
Q Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 92 (470)
..-..|+.++|.+++++. +.+.+|..+|.++...|++++|++.|.++ .++.++...+.++...|++++|+
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 334678899999999998 34579999999999999999999999774 46668999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy16214 93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQ 172 (470)
Q Consensus 93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~ 172 (470)
.+++.+.+..++ +.+...++.++ .+.|++.++...++ .|+ ...+..+|..+...|+|++|.
T Consensus 82 ~yl~~ark~~~~-~~i~~~Li~~Y------------~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 82 KYLQMARKKARE-SYVETELIFAL------------AKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ----------------------------------------CHHHHTTTTT-----CC-----------------CTTTHH
T ss_pred HHHHHHHHhCcc-chhHHHHHHHH------------HHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHH
Confidence 999999885433 55555555553 34456666555553 243 358899999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy16214 173 EIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAF 252 (470)
Q Consensus 173 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 252 (470)
.+|.++ ..|..+|.++..+|++++|++.++++ .++..|... +.++...|+++.|.
T Consensus 143 ~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v------------~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 143 LLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEV------------CFACVDGKEFRLAQ 197 (449)
T ss_dssp HHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHH------------HHHHHHTTCHHHHH
T ss_pred HHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHH------------HHHHHHcCcHHHHH
Confidence 999977 57899999999999999999999999 356677666 89999999999998
Q ss_pred HHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHH
Q psy16214 253 DIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA--LGQYKECVIDAEKI 330 (470)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a 330 (470)
.+... +...|++ ...+..+|.+.|++++|+.++++++.+++.+..++..+|.+|.+ .++..++++.|...
T Consensus 198 ~~~l~-L~~~ad~-------l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 198 MCGLH-IVVHADE-------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 269 (449)
T ss_dssp HTTTT-TTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHH-HHhCHhh-------HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77775 4455552 44578899999999999999999999999999999999988874 56777888877766
Q ss_pred HhcCC
Q psy16214 331 YKMDN 335 (470)
Q Consensus 331 ~~~~p 335 (470)
+.+.|
T Consensus 270 ini~k 274 (449)
T 1b89_A 270 VNIPK 274 (449)
T ss_dssp SCHHH
T ss_pred hcCcH
Confidence 66655
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.76 E-value=3.1e-18 Score=149.81 Aligned_cols=208 Identities=12% Similarity=0.041 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHH-------HHHHHHcCChHHHHHHHHHHHhcCCCCH----
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNR-------AACYMMLGMYTYALDDAKLAVSLDPRFS---- 72 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-------a~~~~~~g~~~~A~~~~~~al~~~p~~~---- 72 (470)
...++..|..+ ..+++..|...|.+++..+|+.+++|.++ +.++..++++.+++..+.+.+.+.|...
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 45678888886 68999999999999999999999999999 8999999999999999999999887643
Q ss_pred -----------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy16214 73 -----------------KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYR 135 (470)
Q Consensus 73 -----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 135 (470)
.+...++.++...|++++|.+.|..++...|.+. .. +..+..++..++|+
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~------------~~~a~l~~~~~r~~ 152 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VA------------WMKAVVYGAAERWT 152 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HH------------HHHHHHHHHTTCHH
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HH------------HHHHHHHHHcCCHH
Confidence 3445588999999999999999999998888766 54 44445588999999
Q ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CC-ChHHHHHHHHHHhccCChHHHHHHHH
Q psy16214 136 TAMFYLDRAMDQGVAS--KTYKLMKAECLAHLNRLQEAQEIANSILATD--KQ-NPDAVFVRGLCLYYDDKMDLAVNHFQ 210 (470)
Q Consensus 136 ~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~ 210 (470)
+|+..++.+....+.. ..+++.+|.++..+|++++|+..|++++... |. .+++++.+|.++..+|+.++|...|+
T Consensus 153 dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 153 DVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998776653221 3588999999999999999999999998644 55 56799999999999999999999999
Q ss_pred HHHhhCCChHHHHHHH
Q psy16214 211 LLLKLAPDHAKAKETY 226 (470)
Q Consensus 211 ~~l~~~p~~~~~~~~~ 226 (470)
+++..+|+ ..+...+
T Consensus 233 ~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 233 WLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHSCC-HHHHHHH
T ss_pred HHHhcCCc-HHHHHHH
Confidence 99999999 7765544
No 111
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.75 E-value=4.7e-14 Score=140.31 Aligned_cols=319 Identities=8% Similarity=-0.030 Sum_probs=239.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCC--CCHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGM---YTYALDDAKLAVSLDP--RFSKGLIR 77 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p--~~~~~~~~ 77 (470)
+...|..........+.++.+...|++++...|.....|...+..-...++ ++.+...|++++...| .++..|..
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~ 144 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLS 144 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 456788888888888899999999999999999999999888888888888 9999999999998873 56677766
Q ss_pred HHHHHHHcCCh----HH----HHHHHHHHHhc----CCCChHHHHHHHHHHH---------HH-----------------
Q psy16214 78 QIKCNIALGDA----PT----ARSNLKALQEL----DPDNPAIAQESKALET---------MA----------------- 119 (470)
Q Consensus 78 la~~~~~~g~~----~~----A~~~~~~~l~~----~p~~~~~~~~l~~~~~---------~~----------------- 119 (470)
........++. ++ ....|++++.. ++....+|........ ..
T Consensus 145 Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP 224 (679)
T 4e6h_A 145 YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP 224 (679)
T ss_dssp HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc
Confidence 66555444443 22 33566666642 4555555544332210 00
Q ss_pred -------------------------------HHHHHHHHHHh--------------------------------------
Q psy16214 120 -------------------------------KNFEGASKAFE-------------------------------------- 130 (470)
Q Consensus 120 -------------------------------~~~~~a~~~~~-------------------------------------- 130 (470)
..+..|...+.
T Consensus 225 ~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~l 304 (679)
T 4e6h_A 225 MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI 304 (679)
T ss_dssp CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHH
Confidence 01111111110
Q ss_pred --------cCC---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHhhcCCCChHHHHHH
Q psy16214 131 --------AND---------YRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQ-EIANSILATDKQNPDAVFVR 192 (470)
Q Consensus 131 --------~~~---------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~l 192 (470)
..+ .......|++++...|..+.+|+..+..+...|+.++|. ..|++++...|.+...|+..
T Consensus 305 W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~ 384 (679)
T 4e6h_A 305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSL 384 (679)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 000 223456788999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHhhC-----------CC-----------hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy16214 193 GLCLYYDDKMDLAVNHFQLLLKLA-----------PD-----------HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250 (470)
Q Consensus 193 a~~~~~~g~~~~A~~~~~~~l~~~-----------p~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (470)
+.+....|+++.|...|++++... |. ...+|..+ +....+.+..+.
T Consensus 385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y------------~~~erR~~~l~~ 452 (679)
T 4e6h_A 385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY------------MNTMKRIQGLAA 452 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH------------HHHHHHHHCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH------------HHHHHHcCCHHH
Confidence 999999999999999999998752 42 12234433 666677789999
Q ss_pred HHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16214 251 AFDIYTEALKIDARNININSKLLHNRATVLFKMGK-YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329 (470)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 329 (470)
|..+|.+|++..|.. ...+|...|.+....++ ++.|...|+.+++..|+++..+...+......|+.+.|...|++
T Consensus 453 AR~vf~~A~~~~~~~---~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 453 SRKIFGKCRRLKKLV---TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHHHHHHHHTGGGS---CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC---ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999873322 23557677777777654 89999999999999999999999999999999999999999999
Q ss_pred HHhcCCC
Q psy16214 330 IYKMDNS 336 (470)
Q Consensus 330 a~~~~p~ 336 (470)
++...|+
T Consensus 530 al~~~~~ 536 (679)
T 4e6h_A 530 SIDKISD 536 (679)
T ss_dssp HTTTSSS
T ss_pred HHHhcCC
Confidence 9999885
No 112
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.75 E-value=1.8e-17 Score=149.00 Aligned_cols=197 Identities=19% Similarity=0.178 Sum_probs=161.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
..+..++.+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC 161 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 161 (470)
+..+|++++|+..|+++++++|+++..+......... ..++...........|.+..+...++.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~i~~~l~~l 146 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---------------IAKKKRWNSIEERRIHQESELHSYLTRL 146 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---------------HHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999998764322111111000 0111122223334567777777767665
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc-CChHHHHHHHHHHHhh
Q psy16214 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-DKMDLAVNHFQLLLKL 215 (470)
Q Consensus 162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~ 215 (470)
+ .|++++|++.++++++.+|.+......++.++... +.+++|...|.++.+.
T Consensus 147 ~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 147 I--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp H--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred H--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4 68999999999999999999888888877777666 6788999999888764
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.74 E-value=6.8e-18 Score=135.61 Aligned_cols=119 Identities=12% Similarity=0.114 Sum_probs=105.1
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy16214 170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQ 249 (470)
Q Consensus 170 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (470)
.+-..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.++..+ |.++...|+++
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~l------------g~~~~~~g~~~ 87 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL------------AAIYQIKEQFQ 87 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHccHH
Confidence 344567788888999999999999999999999999999999999999999998888 99999999999
Q ss_pred HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy16214 250 EAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL 304 (470)
Q Consensus 250 ~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (470)
+|+..|++++.++|+++ .+++++|.++..+|++++|+..|++++++.|+.+
T Consensus 88 ~Ai~~~~~al~l~P~~~----~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 88 QAADLYAVAFALGKNDY----TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHSSSCC----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999854 5699999999999999999999999999998864
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.74 E-value=3.8e-17 Score=162.41 Aligned_cols=164 Identities=16% Similarity=0.099 Sum_probs=136.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q psy16214 132 NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL 211 (470)
Q Consensus 132 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 211 (470)
|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc---CCHHH
Q psy16214 212 LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM---GKYNE 288 (470)
Q Consensus 212 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~---g~~~~ 288 (470)
+++.+|++..++..+ |.++...|++++|+..|+++++.+|++ ..++.++|.++..+ |++++
T Consensus 83 al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 83 ASDAAPEHPGIALWL------------GHALEDAGQAEAAAAAYTRAHQLLPEE----PYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhcCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhccccHHH
Confidence 999999998888887 999999999999999999999999984 56799999999999 99999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 289 AIADCTLALEKDPNYLKALSRRC 311 (470)
Q Consensus 289 A~~~~~~al~~~p~~~~~~~~la 311 (470)
|+..++++++.+|.+...+..++
T Consensus 147 A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 147 LSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHhcCCcccChHHHhC
Confidence 99999999999999877777666
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.73 E-value=6.3e-16 Score=132.67 Aligned_cols=185 Identities=8% Similarity=-0.090 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC----ChHHHHHHHHH
Q psy16214 136 TAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD----KMDLAVNHFQL 211 (470)
Q Consensus 136 ~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 211 (470)
+|+.+|+++.+. .++.++..+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 467778888775 78999999999999999999999999999875 689999999999998 7 89999999999
Q ss_pred HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH----c
Q psy16214 212 LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV----AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK----M 283 (470)
Q Consensus 212 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~----~ 283 (470)
+.+ +.++.+...+ |.++.. .+++++|+.+|+++++..|.+. .+.+++++|.+|.. .
T Consensus 79 A~~--~g~~~a~~~L------------g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~--~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 79 AVE--AGSKSGEIVL------------ARVLVNRQAGATDVAHAITLLQDAARDSESDA--AVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp HHH--TTCHHHHHHH------------HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH--HHHHHHHHHHHHHHTSSSS
T ss_pred HHH--CCCHHHHHHH------------HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc--hHHHHHHHHHHHHcCCCCC
Confidence 965 5677787777 999988 8999999999999999887311 36789999999999 8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHhcCCChhHHHHH
Q psy16214 284 GKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL-G-----QYKECVIDAEKIYKMDNSRENHNFL 343 (470)
Q Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a~~~~p~~~~~~~l 343 (470)
+++++|+.+|+++++. |.++.+++.+|.+|... | ++++|+.+|+++.+... .+....|
T Consensus 143 ~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~-~~A~~~l 206 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF-DTGCEEF 206 (212)
T ss_dssp CCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 9999999999999998 77788999999999865 3 89999999999999865 3333333
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.73 E-value=3.7e-17 Score=131.55 Aligned_cols=130 Identities=13% Similarity=0.184 Sum_probs=116.9
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC
Q psy16214 206 VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK 285 (470)
Q Consensus 206 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~ 285 (470)
-..|++++.++|++...+..+ |.+++..|++++|+..|++++..+|.+ +.+|.++|.++..+|+
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~------------g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~ 70 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSL------------AFNQYQSGXYEDAHXVFQALCVLDHYD----SRFFLGLGACRQAMGQ 70 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHcCCHhhHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHHhh
Confidence 346888999999998888887 999999999999999999999999994 5679999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhh
Q psy16214 286 YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLK 351 (470)
Q Consensus 286 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~ 351 (470)
+++|+..|++++.++|+++.+++.+|.++..+|++++|+..|++++++.|+ ++......++...++
T Consensus 71 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 71 YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997 555555555555543
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.3e-16 Score=124.69 Aligned_cols=114 Identities=28% Similarity=0.402 Sum_probs=108.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
.+++.++.+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcC------CCChHHHHHHHHH
Q psy16214 82 NIALGDAPTARSNLKALQELD------PDNPAIAQESKAL 115 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~ 115 (470)
+..+|++++|+..|+++++++ |++..++..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 999999999999999999999 8888887766665
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=9.7e-19 Score=161.40 Aligned_cols=183 Identities=14% Similarity=0.122 Sum_probs=154.9
Q ss_pred CHHHHHHHHHH----HHHhCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy16214 133 DYRTAMFYLDR----AMDQGVASKTYKLMKAECLA------------HLNRLQEAQEIANSILATDKQNPDAVFVRGLCL 196 (470)
Q Consensus 133 ~~~~A~~~~~~----~l~~~p~~~~~~~~~a~~~~------------~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 196 (470)
.+++|+..+.. ++.+.|.. ++..+|.... .++++++|+..++.++...|..+.++..+|.++
T Consensus 80 ~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~ 157 (336)
T 1p5q_A 80 GLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVY 157 (336)
T ss_dssp HHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence 45566666666 66667765 3333333322 456777888888888888999999999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCChH---------------HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy16214 197 YYDDKMDLAVNHFQLLLKLAPDHA---------------KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI 261 (470)
Q Consensus 197 ~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 261 (470)
+..|++++|+..|++++.+.|++. .++..+ |.++...|++++|+.+|++++.+
T Consensus 158 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl------------a~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL------------AMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999883 444444 99999999999999999999999
Q ss_pred cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhc
Q psy16214 262 DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKEC-VIDAEKIYKM 333 (470)
Q Consensus 262 ~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~ 333 (470)
+|+ ...+++++|.++..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 226 ~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 226 DSN----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 5677999999999999999999999999999999999999999999999999999 5577777754
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.71 E-value=8.4e-19 Score=161.81 Aligned_cols=196 Identities=10% Similarity=0.053 Sum_probs=157.5
Q ss_pred cCCHHHHHHHHHH----HhhcCCchhHHHHHHHHHHH------------HcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16214 17 LKQYSKALKCYSE----AISVCPNVAAYYGNRAACYM------------MLGMYTYALDDAKLAVSLDPRFSKGLIRQIK 80 (470)
Q Consensus 17 ~g~~~~A~~~~~~----al~~~p~~~~~~~~~a~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 80 (470)
.+.+++|+..+.. ++.+.|.. +|..+|.... .++++++|+..+++++..+|..+.++..+|.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 4578899999999 88888876 5556665543 5678889999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16214 81 CNIALGDAPTARSNLKALQELDPDNPAI---AQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLM 157 (470)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 157 (470)
++...|++++|+..|++++.+.|++... ......-.........+..++..|++++|+..+++++..+|++..+++.
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999999999999999999998310 0000000001112444555788899999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHH-HHHHHHHHh
Q psy16214 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLA-VNHFQLLLK 214 (470)
Q Consensus 158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~ 214 (470)
+|.++...|++++|+..|+++++++|++..++..++.++...|++++| ...|++++.
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888 446666654
No 120
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.71 E-value=4.6e-17 Score=128.86 Aligned_cols=113 Identities=16% Similarity=0.102 Sum_probs=104.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc-------hh-----HHHHHHHHHHHHcCChHHHHHHHHHHHhc---
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN-------VA-----AYYGNRAACYMMLGMYTYALDDAKLAVSL--- 67 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~--- 67 (470)
.+..++.+|+.++..|+|++|+..|+++|+++|+ +. .+|.++|.++..+|++++|+..++++|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4678999999999999999999999999999998 33 39999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 68 ----DPRFSKGL----IRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 68 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999988766555554
No 121
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.71 E-value=5.3e-18 Score=125.25 Aligned_cols=69 Identities=46% Similarity=0.784 Sum_probs=62.4
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI 429 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~ 429 (470)
.++|++||+...++.++|+++||+++++||||++... ..++++|+.|++||++|+||.+|..||.....
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-----KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA 71 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT-----CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence 5799999999999999999999999999999998752 24678899999999999999999999996654
No 122
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.70 E-value=2.5e-15 Score=133.18 Aligned_cols=251 Identities=14% Similarity=0.079 Sum_probs=182.1
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q psy16214 47 CYMMLGMYTYALDDAKLAVSLDPRF-SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGA 125 (470)
Q Consensus 47 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a 125 (470)
-.+-.|+|..++.... ++.|.+ ....+.+.++|+.+|++... .. .+....+...++.
T Consensus 22 n~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~----------- 79 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQ----------- 79 (310)
T ss_dssp HHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHH-----------
T ss_pred HHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHH-----------
Confidence 3455677777776432 333333 34555566777777776631 11 1111112111111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC--CChHHHHHHHHHHhccCChH
Q psy16214 126 SKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK--QNPDAVFVRGLCLYYDDKMD 203 (470)
Q Consensus 126 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~ 203 (470)
++. +. |+..+++.+...+.....+..+|.++...|++++|++.+.+.+..+| .+.+++..++.++..+|+.+
T Consensus 80 --~~~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d 153 (310)
T 3mv2_B 80 --FLD-TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS 153 (310)
T ss_dssp --HHT-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH
T ss_pred --Hhc-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH
Confidence 111 22 67777777777666666778899999999999999999999999887 88999999999999999999
Q ss_pred HHHHHHHHHHhhCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhcccCccchHHHHHHH
Q psy16214 204 LAVNHFQLLLKLAPD-----HAKAKETYKRAKLLKAKKEEGNEKFVAG--KNQEAFDIYTEALKIDARNININSKLLHNR 276 (470)
Q Consensus 204 ~A~~~~~~~l~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~l 276 (470)
.|.+.+++..+.+|+ +... ..+ ..+.+.+..| ++.+|...|+++....|+.. ...++++
T Consensus 154 ~A~k~l~~~~~~~~d~~~~~d~~l-~~L----------aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~--~~~lLln- 219 (310)
T 3mv2_B 154 TASTIFDNYTNAIEDTVSGDNEMI-LNL----------AESYIKFATNKETATSNFYYYEELSQTFPTWK--TQLGLLN- 219 (310)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHH-HHH----------HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH--HHHHHHH-
T ss_pred HHHHHHHHHHhcCccccccchHHH-HHH----------HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc--cHHHHHH-
Confidence 999999999999983 3222 222 1154455555 99999999999988877511 1223444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHH
Q psy16214 277 ATVLFKMGKYNEAIADCTLALEK----------DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFL 343 (470)
Q Consensus 277 a~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l 343 (470)
++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+.....-+
T Consensus 220 --~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 220 --LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp --HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred --HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 899999999999999988876 58899999999999999998 9999999999999996554444
No 123
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.70 E-value=2.6e-16 Score=122.98 Aligned_cols=106 Identities=25% Similarity=0.293 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-------SKGL 75 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 75 (470)
.+.++.++|+.++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++ ..++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999998865 3588
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHH
Q psy16214 76 IRQIKCNIALGDAPTARSNLKALQELDPDNPAIA 109 (470)
Q Consensus 76 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 109 (470)
..+|.++..+|++++|++.|++++...|+ ++..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 99999999999999999999999998885 4443
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.70 E-value=1.4e-16 Score=143.06 Aligned_cols=198 Identities=10% Similarity=0.014 Sum_probs=157.9
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy16214 35 PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA 114 (470)
Q Consensus 35 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 114 (470)
|.++..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|++..++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999998866666
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy16214 115 LETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL 194 (470)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 194 (470)
+ +...|++++|+..+++++..+|++...+........ ...++...........|.++.+...++.
T Consensus 81 ~------------~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 145 (281)
T 2c2l_A 81 C------------QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTR 145 (281)
T ss_dssp H------------HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHH
T ss_pred H------------HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5 777899999999999999998866322211111111 1222233333444567788888877777
Q ss_pred HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q psy16214 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA-GKNQEAFDIYTEALKI 261 (470)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~ 261 (470)
++ .|++++|+..++++++.+|++......+ +..+... +.+++|...|.++.+.
T Consensus 146 l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 146 LI--AAERERELEECQRNHEGHEDDGHIRAQQ------------ACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HH--HHHHHHHHTTTSGGGTTTSCHHHHTHHH------------HHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HH--HHHHHHHHHHHHhhhccccchhhhhhHH------------HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 65 7999999999999999999987666555 4444444 6788899999888754
No 125
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.1e-18 Score=121.93 Aligned_cols=67 Identities=43% Similarity=0.709 Sum_probs=60.2
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
...++|++||+...++..+|+++|+++++++|||+++.+ .++|+.|++||++|+||.+|..||....
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 72 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD--------TEKFKEISEAFEILNDPQKREIYDQYGL 72 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC--------HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence 346899999999999999999999999999999998752 3489999999999999999999997543
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.69 E-value=1.1e-16 Score=128.81 Aligned_cols=116 Identities=14% Similarity=0.004 Sum_probs=79.5
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy16214 25 KCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD 104 (470)
Q Consensus 25 ~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 104 (470)
..|++++..+|+++.+++.+|.+++..|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45777777777777778888888888888888888888888888888888888888888888888877777777777777
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q psy16214 105 NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK 152 (470)
Q Consensus 105 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 152 (470)
++.++..++.+ +...|++++|+..++++++..|+++
T Consensus 88 ~~~~~~~lg~~------------~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 88 EPRFPFHAAEC------------LLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp CTHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred CchHHHHHHHH------------HHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 66654333333 3344444444444444444444433
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.69 E-value=5.4e-16 Score=123.95 Aligned_cols=116 Identities=22% Similarity=0.297 Sum_probs=108.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
+++.++.+|..++..|+|++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETM 118 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 118 (470)
..+|++++|+..|+++++++|+++........+...
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 999999999999999999999998876555554433
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.5e-16 Score=156.23 Aligned_cols=195 Identities=14% Similarity=0.100 Sum_probs=175.3
Q ss_pred HHHhcCCH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 13 TQYKLKQY-SKALKCYSEAISVCPNVAAYYGNRAACYMMLGM----------YTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 13 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
.....|++ ++|+..+++++..+|++..+|+.++.++..+++ +++++..++++++.+|++..+|..++.+
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455655 578999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHcC--ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214 82 NIALG--DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAN-DYRTAMFYLDRAMDQGVASKTYKLMK 158 (470)
Q Consensus 82 ~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~ 158 (470)
+..++ ++++|++.+.++++++|.+..+|...+.+. ...+ .+++++++++++++.+|.+..+|..+
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l------------~~l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA------------AQAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------HHTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHH------------HHcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 99999 679999999999999999999998877763 3345 78999999999999999999999999
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHH------------HHHHHHHH
Q psy16214 159 AECLAHL--------------NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDL------------AVNHFQLL 212 (470)
Q Consensus 159 a~~~~~~--------------~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~~ 212 (470)
+.++... +.++++++++.+++..+|++..+|+.++.++...+.+++ |+..|.++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 264 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRP 264 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccc
Confidence 9999885 668999999999999999999999999999999988766 56667777
Q ss_pred HhhCCCh
Q psy16214 213 LKLAPDH 219 (470)
Q Consensus 213 l~~~p~~ 219 (470)
+.++|..
T Consensus 265 i~~~~~~ 271 (567)
T 1dce_A 265 LTVGSRM 271 (567)
T ss_dssp ECTTBTT
T ss_pred eeccccc
Confidence 7777763
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.68 E-value=2.5e-16 Score=125.97 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=112.7
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCH
Q psy16214 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY 286 (470)
Q Consensus 207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~ 286 (470)
..|++++..+|++...+..+ |..++..|++++|+..|++++..+|++ +.+|..+|.++..+|++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~------------a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~ 68 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYAL------------GFNQYQAGKWDDAQKIFQALCMLDHYD----ARYFLGLGACRQSLGLY 68 (142)
T ss_dssp ----CCTTCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHcCCHHHHHHHHHH------------HHHHHHHccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHHhhH
Confidence 46778888899888888777 999999999999999999999999994 56799999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhh
Q psy16214 287 NEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLK 351 (470)
Q Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~ 351 (470)
++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+ ++......++...++
T Consensus 69 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 69 EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 555555555555443
No 130
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.68 E-value=5e-16 Score=127.27 Aligned_cols=116 Identities=25% Similarity=0.374 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------------------CCchhHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISV------------------CPNVAAYYGNRAACYMMLGMYTYALDDAKLA 64 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 64 (470)
.+..+..+|..++..|+|++|+..|++++.. +|.++.++.++|.|+..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4678999999999999999999999999999 7777899999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHH
Q psy16214 65 VSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETM 118 (470)
Q Consensus 65 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~ 118 (470)
++++|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...+..+...
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 666666666443
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.68 E-value=1e-15 Score=119.53 Aligned_cols=109 Identities=24% Similarity=0.292 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q psy16214 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-------LKA 306 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 306 (470)
.+.+.|..++..|++++|+.+|+++++++|+ .+.+|.++|.++..+|++++|+..|+++++++|++ ..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~----~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS----NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3445599999999999999999999999999 45679999999999999999999999999998765 468
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy16214 307 LSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEA 346 (470)
Q Consensus 307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~ 346 (470)
+.++|.++..+|++++|+.+|++++++.|++++...|..+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~l 125 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHHHh
Confidence 9999999999999999999999999999998877766554
No 132
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=2e-15 Score=129.47 Aligned_cols=177 Identities=15% Similarity=0.039 Sum_probs=155.0
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChHHHHHHHH
Q psy16214 21 SKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG----DAPTARSNLK 96 (470)
Q Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 96 (470)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+..|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4578899999876 67999999999999999999999999999875 589999999999998 7 8999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cC
Q psy16214 97 ALQELDPDNPAIAQESKALETMAKNFEGASKAFE----ANDYRTAMFYLDRAMDQGV--ASKTYKLMKAECLAH----LN 166 (470)
Q Consensus 97 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~----~~ 166 (470)
++.+ +.++.++..++.+ +.. .+++++|+.+++++++..| ..+.++..+|.+|.. .+
T Consensus 78 ~A~~--~g~~~a~~~Lg~~------------y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~ 143 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARV------------LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE 143 (212)
T ss_dssp HHHH--TTCHHHHHHHHHH------------HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred HHHH--CCCHHHHHHHHHH------------HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 9965 5788888777766 444 6899999999999999888 358999999999999 89
Q ss_pred CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc-C-----ChHHHHHHHHHHHhhCC
Q psy16214 167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-D-----KMDLAVNHFQLLLKLAP 217 (470)
Q Consensus 167 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~~l~~~p 217 (470)
++++|+.+|++++.. |.++.+++.+|.+|... | ++++|+.+|+++.+...
T Consensus 144 d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999998 77888999999999754 3 89999999999998754
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.68 E-value=2.6e-15 Score=135.94 Aligned_cols=178 Identities=15% Similarity=0.117 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh------HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH
Q psy16214 152 KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP------DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET 225 (470)
Q Consensus 152 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 225 (470)
...+...+..+...|++++|+..+.++++..+... ..++.+|.++...|++++|+..+++++...+.....+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~- 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ- 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH-
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH-
Confidence 34556678888999999999999999998877654 34667888999999999999999999987654321110
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214 226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK---IDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302 (470)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (470)
....+...|.++...|++++|+.+|++++. ..|++......++.++|.+|..+|++++|+.++++++.+.++
T Consensus 154 -----~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 154 -----NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 011122339999999999999999999994 445544333478999999999999999999999999987543
Q ss_pred ------CHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhcCC
Q psy16214 303 ------YLKALSRRCKCFHALGQYKEC-VIDAEKIYKMDN 335 (470)
Q Consensus 303 ------~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~p 335 (470)
...+++++|.++..+|++++| ..++++++.+..
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 278999999999999999999 888999997653
No 134
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.68 E-value=3.4e-15 Score=117.68 Aligned_cols=134 Identities=25% Similarity=0.334 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
+.++.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214 85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA 150 (470)
Q Consensus 85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 150 (470)
.|++++|+..+++++...|.+..++..++.+ +...|++++|+..+.+++..+|.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~------------~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNA------------YYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHH------------HHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999999999998877655554 67788899999999998888875
No 135
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.68 E-value=2.7e-15 Score=118.20 Aligned_cols=134 Identities=29% Similarity=0.429 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc
Q psy16214 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI 266 (470)
Q Consensus 187 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 266 (470)
.+++.+|.++...|++++|+..+++++...|++...+..+ |.++...|++++|+..+++++...|.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL------------GNAYYKQGDYDEAIEYYQKALELDPRS- 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTC-
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHH------------HHHHHHhcCHHHHHHHHHHHHHHCCCc-
Confidence 3566667777777777777777777777777666665555 777777777777777777777776663
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 267 NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++++|.
T Consensus 69 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 69 ---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp ---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred ---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 4457777777777777777777777777777777777777777777777777777777777777764
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1.7e-16 Score=155.69 Aligned_cols=189 Identities=11% Similarity=0.003 Sum_probs=174.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC-
Q psy16214 132 NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR----------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDD- 200 (470)
Q Consensus 132 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g- 200 (470)
...++|+..+++++..+|++..+|..++.++...++ +++++..+++++..+|++..+|..++.++...+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345678999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred -ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcccCccchHHHHHHHHH
Q psy16214 201 -KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG-KNQEAFDIYTEALKIDARNININSKLLHNRAT 278 (470)
Q Consensus 201 -~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~ 278 (470)
++++++..+.++++.+|.+..+|... +.+....+ .+++++++++++++.+|. +..+|..++.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R------------~~~l~~l~~~~~~el~~~~~~I~~~p~----n~saW~~r~~ 186 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYR------------RFVAAQAAVAPAEELAFTDSLITRNFS----NYSSWHYRSC 186 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTCCCHHHHHHHHHTTTTTTCC----CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHH------------HHHHHHcCCChHHHHHHHHHHHHHCCC----CccHHHHHHH
Confidence 66999999999999999999999988 88899999 999999999999999999 4677999999
Q ss_pred HHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHh
Q psy16214 279 VLFKM--------------GKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE------------CVIDAEKIYK 332 (470)
Q Consensus 279 ~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~a~~ 332 (470)
++..+ +.++++++++.+++.++|++..+|+.++.++...+++++ |+.+|.+++.
T Consensus 187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~ 266 (567)
T 1dce_A 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLT 266 (567)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEEC
T ss_pred HHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEecccee
Confidence 99885 568999999999999999999999999999999998776 6667888888
Q ss_pred cCCC
Q psy16214 333 MDNS 336 (470)
Q Consensus 333 ~~p~ 336 (470)
++|.
T Consensus 267 ~~~~ 270 (567)
T 1dce_A 267 VGSR 270 (567)
T ss_dssp TTBT
T ss_pred cccc
Confidence 7775
No 137
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.68 E-value=1.2e-14 Score=128.82 Aligned_cols=259 Identities=11% Similarity=0.023 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
++.++.. ...|..|+|..++....+ ..|.+ ....+.+..+|+.+|++.... ..+....+...++..+
T Consensus 14 ~~~lf~i-kn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 14 PMDYFNI-KQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFL 81 (310)
T ss_dssp -CCTHHH-HHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHH
T ss_pred cHHHHHH-HHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHh
Confidence 4445544 567889999999985443 33433 345667788899999987521 1222333444555544
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV--ASKTYKLMKAE 160 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~ 160 (470)
. ++ |+..+++.+...+.+......++.+ +...|++++|+.++.+.+..+| .+.+++...+.
T Consensus 82 ~--~~---a~~~l~~l~~~~~~~~~~~~~la~i------------~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq 144 (310)
T 3mv2_B 82 D--TK---NIEELENLLKDKQNSPYELYLLATA------------QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE 144 (310)
T ss_dssp T--TT---CCHHHHHTTTTSCCCHHHHHHHHHH------------HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred c--cc---HHHHHHHHHhcCCCCcHHHHHHHHH------------HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH
Confidence 2 22 8999999988766666655555555 6667999999999999999987 88899999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCC------ChHHHHHHHHHHhccC--ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q psy16214 161 CLAHLNRLQEAQEIANSILATDKQ------NPDAVFVRGLCLYYDD--KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL 232 (470)
Q Consensus 161 ~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 232 (470)
++...|+.+.|.+.++++.+.+|+ ...+...-+.+.+..| ++.+|...|+++....|+.......+
T Consensus 145 i~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLl------ 218 (310)
T 3mv2_B 145 VALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL------ 218 (310)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHH------
Confidence 999999999999999999999883 2333333354466666 99999999999999888733333333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc-------CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR-------NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (470)
. ++..+|++++|...++.+++..|+ ++. ++.++.+++.+...+|+ +|.++++++.+.+|+++.
T Consensus 219 ------n-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 219 ------N-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp ------H-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred ------H-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 3 789999999999999988877432 111 56779899999999998 899999999999999987
Q ss_pred HH
Q psy16214 306 AL 307 (470)
Q Consensus 306 ~~ 307 (470)
+.
T Consensus 289 i~ 290 (310)
T 3mv2_B 289 IK 290 (310)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.68 E-value=1.4e-15 Score=124.95 Aligned_cols=113 Identities=30% Similarity=0.412 Sum_probs=106.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
..++.++.+|..++..|+|++|+.+|++++..+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy16214 82 NIALGDAPTARSNLKALQELDPDNPAIAQESKA 114 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 114 (470)
+..+|++++|+.+|+++++++|++...+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999886544443
No 139
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.67 E-value=3.9e-16 Score=123.52 Aligned_cols=118 Identities=18% Similarity=0.145 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q psy16214 230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN--------INSKLLHNRATVLFKMGKYNEAIADCTLALEK-- 299 (470)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 299 (470)
.....+...|..++..|++++|+..|+++++++|+++. ..+.+|.++|.++..+|++++|+..|+++|++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34455566799999999999999999999999998321 13458999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q psy16214 300 -----DPNYLKAL----SRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAK 347 (470)
Q Consensus 300 -----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~ 347 (470)
+|+++.+| +++|.++..+|++++|+.+|+++++++|+ ..+...+..++
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999996 33333333333
No 140
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.65 E-value=8e-15 Score=125.91 Aligned_cols=162 Identities=14% Similarity=0.011 Sum_probs=128.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.+..++.+|..++..|+|++|+..|++++ +| ++.+++++|.++...|++++|+..+++++.++|+++.++..+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 35578999999999999999999999996 33 6789999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL 162 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 162 (470)
..+|++++|+..|++++++.|.+.... + ....+...|....++..+|.++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~------------------~------------~~~~~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLID------------------Y------------KILGLQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEE------------------C------------GGGTBCCEEEHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHH------------------H------------HHhccccCccchHHHHHHHHHH
Confidence 999999999999999999999876221 0 0011123344455666677777
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q psy16214 163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLY 197 (470)
Q Consensus 163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 197 (470)
...|++++|+..+++++...|++.......+....
T Consensus 132 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 132 AKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 77777777777777777777765554444444433
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.65 E-value=1.4e-14 Score=131.05 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=139.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH------HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHH
Q psy16214 156 LMKAECLAHLNRLQEAQEIANSILATDKQNPD------AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA 229 (470)
Q Consensus 156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 229 (470)
...+..+...|++++|+..+++++...+..+. .+..+|.++...+++++|+.++++++...+.......
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~----- 153 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ----- 153 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH-----
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH-----
Confidence 34577788999999999999999998777655 2335888899999999999999999996554333110
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc---cCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy16214 230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA---RNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY--- 303 (470)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 303 (470)
.+..+...|.++...|++++|+.+|++++.... .+......++.++|.+|..+|++++|+.++++++++.+..
T Consensus 154 -~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 154 -NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 111123339999999999999999999996432 3333456789999999999999999999999999886443
Q ss_pred ---HHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcC
Q psy16214 304 ---LKALSRRCKCFHALG-QYKECVIDAEKIYKMD 334 (470)
Q Consensus 304 ---~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~ 334 (470)
+.++..+|.++..+| .+++|+.+|++++.+.
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 889999999999999 5799999999999875
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.5e-15 Score=115.38 Aligned_cols=110 Identities=32% Similarity=0.469 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCF 314 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 314 (470)
+...|..++..|++++|+..|++++..+|+ .+.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 344599999999999999999999999999 4577999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcC------CC-hhHHHHHHHHHH
Q psy16214 315 HALGQYKECVIDAEKIYKMD------NS-RENHNFLEEAKR 348 (470)
Q Consensus 315 ~~~g~~~~A~~~~~~a~~~~------p~-~~~~~~l~~~~~ 348 (470)
..+|++++|+..|+++++++ |+ ..+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999 76 555666655543
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.64 E-value=1.4e-15 Score=117.72 Aligned_cols=103 Identities=17% Similarity=0.081 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChH
Q psy16214 85 LGDAPTARSNLKALQELDPDNPA 107 (470)
Q Consensus 85 ~g~~~~A~~~~~~~l~~~p~~~~ 107 (470)
+|++++|+..++++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998653
No 144
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=114.39 Aligned_cols=71 Identities=55% Similarity=0.809 Sum_probs=63.9
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
...++|++||+...++..+|+++|++++++||||++... .+.++++|+.|++||++|+||.+|..||....
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN----KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC----SHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 457899999999999999999999999999999998763 34678899999999999999999999998543
No 145
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.64 E-value=5.9e-15 Score=120.84 Aligned_cols=118 Identities=25% Similarity=0.282 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------cccCccchHHHHHHHHHHHHHcCCHHHHHHH
Q psy16214 231 LLKAKKEEGNEKFVAGKNQEAFDIYTEALKI------------------DARNININSKLLHNRATVLFKMGKYNEAIAD 292 (470)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (470)
....+...|..++..|++++|+..|++++.. +|. ...++.++|.++..+|++++|+..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK----NIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT----HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH----HHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3445566699999999999999999999998 444 567899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-h-hHHHHHHHHHHHhhc
Q psy16214 293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-R-ENHNFLEEAKRLLKR 352 (470)
Q Consensus 293 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~-~~~~~l~~~~~~~~~ 352 (470)
+++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+ . .+...|..+...++.
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 3 567777777666653
No 146
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.64 E-value=2.4e-14 Score=122.92 Aligned_cols=145 Identities=16% Similarity=0.022 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Q psy16214 155 KLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA 234 (470)
Q Consensus 155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 234 (470)
++.+|.++...|++++|+..+++++ .| ++.+++.+|.++...|++++|+..|++++..+|++..++..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l-------- 77 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR-------- 77 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH--------
Confidence 4455555555555555555555553 12 445555555555555555555555555555555555444444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCF 314 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 314 (470)
|.++...|++++|+..|++++...|.+.... +....+...|..+.+++.+|.++
T Consensus 78 ----g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 78 ----GMLYYQTEKYDLAIKDLKEALIQLRGNQLID----------------------YKILGLQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp ----HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE----------------------CGGGTBCCEEEHHHHHHHHHHHH
T ss_pred ----HHHHHHcccHHHHHHHHHHHHHhCCCccHHH----------------------HHHhccccCccchHHHHHHHHHH
Confidence 5555555555555555555555555433110 00000012222336777777777
Q ss_pred HHhCCHHHHHHHHHHHHhcCCC
Q psy16214 315 HALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 315 ~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
..+|++++|+..|++++++.|+
T Consensus 132 ~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 132 AKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777777777765
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=5.3e-15 Score=123.07 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=115.0
Q ss_pred HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHH
Q psy16214 196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN 275 (470)
Q Consensus 196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 275 (470)
+...|++++|+..+++++..+|++..++..+ |.++...|++++|+.+|++++..+|.+ ..++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALL------------GEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHH
Confidence 4567899999999999999999999998888 999999999999999999999999984 567999
Q ss_pred HHHH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCh
Q psy16214 276 RATV-LFKMGKY--NEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSR 337 (470)
Q Consensus 276 la~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 337 (470)
+|.+ +...|++ ++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|+.
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 9999 8899999 999999999999999999999999999999999999999999999999973
No 148
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=1.6e-14 Score=118.48 Aligned_cols=134 Identities=31% Similarity=0.499 Sum_probs=118.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|.++.+++.+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMD 146 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 146 (470)
..+|++++|+.+++++++++|.+..++..++.+ ..+...|++++|+..+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQEC----------NKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------HHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998877444433 223345667777777666544
No 149
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.63 E-value=2e-17 Score=148.14 Aligned_cols=68 Identities=41% Similarity=0.646 Sum_probs=0.0
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE 427 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~ 427 (470)
..+++|++||+..+++.++|++|||+++++||||++++ ..++++|++|++||++|+||++|+.||...
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE------NDAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC------hHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 44799999999999999999999999999999999865 257889999999999999999999999853
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.63 E-value=8.6e-15 Score=116.04 Aligned_cols=115 Identities=30% Similarity=0.452 Sum_probs=107.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
.++..++.+|..++..|+|++|+.+|++++..+|+++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCC-----ChHHHHHHHHHH
Q psy16214 82 NIALGDAPTARSNLKALQELDPD-----NPAIAQESKALE 116 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~ 116 (470)
+..+|++++|+..|++++.+.|+ +..+...+..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 666665555553
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.63 E-value=5.6e-16 Score=131.60 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=102.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHH----HHHHHHH
Q psy16214 156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE----TYKRAKL 231 (470)
Q Consensus 156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----~~~~~~~ 231 (470)
...+.+....++++++.+.+.......+..+..+..+|.+++..|++++|+..|++++...|.++.... .......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 334555666777777777777666666666778889999999999999999999999998887651100 0000001
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRC 311 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 311 (470)
...+...|.++...|++++|+.++++++..+|. ...+++.+|.++..+|++++|+..|+++++++|++..++..++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN----NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 112222377777777777777777777777776 3455777777777777777777777777777777777777777
Q ss_pred HHHHHhCCHHHHH-HHHHHHH
Q psy16214 312 KCFHALGQYKECV-IDAEKIY 331 (470)
Q Consensus 312 ~~~~~~g~~~~A~-~~~~~a~ 331 (470)
.++..+++..++. ..+.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 164 LCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 7777777666665 3344443
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=1.5e-14 Score=110.95 Aligned_cols=114 Identities=28% Similarity=0.436 Sum_probs=109.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
..+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 82 NIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
+..+|++++|+..++++++.+|+++.++..++.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 9999999999999999999999999988777665
No 153
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.62 E-value=4.9e-16 Score=108.22 Aligned_cols=67 Identities=49% Similarity=0.886 Sum_probs=61.2
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
.++|.+||+...++.++|+++|+++++++|||++... .+++.|+.|++||++|+||.+|..||..++
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP------GAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT------THHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 4789999999999999999999999999999998752 367889999999999999999999998654
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.62 E-value=8.1e-15 Score=115.33 Aligned_cols=117 Identities=31% Similarity=0.402 Sum_probs=111.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC 81 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 81 (470)
..+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy16214 82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETM 118 (470)
Q Consensus 82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 118 (470)
+..+|++++|+..++++++.+|.+..++..++.++..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999998888877543
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.62 E-value=3.1e-15 Score=124.50 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=96.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCh--
Q psy16214 12 NTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC-NIALGDA-- 88 (470)
Q Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~-- 88 (470)
..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456678899999999999999999999999999999999999999999999999999999999999998 7788888
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q psy16214 89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK 152 (470)
Q Consensus 89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 152 (470)
++|+..+++++..+|+++.++..++.+ ++..|++++|+..+++++...|.+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASD------------AFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHH------------HHHcccHHHHHHHHHHHHhhCCCCc
Confidence 888888888888888776665444333 4444555555555555555555543
No 156
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.9e-16 Score=111.51 Aligned_cols=68 Identities=44% Similarity=0.704 Sum_probs=62.4
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE 427 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~ 427 (470)
...++|++||+...++.++|+++||++++++|||++.. ..++++|+.|++||++|+||.+|..||.-.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS------PDAEAKFREIAEAYETLSDANRRKEYDTLG 72 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS------HHHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC------hHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 45789999999999999999999999999999999875 357889999999999999999999999754
No 157
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.62 E-value=3.5e-16 Score=113.84 Aligned_cols=75 Identities=31% Similarity=0.537 Sum_probs=67.3
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCC-ccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTN-ATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~-~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
...++|.+|||...++..+|+++|++++++||||++.. .++..+..++++|+.|++||++|+||.+|+.||....
T Consensus 14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 45789999999999999999999999999999999874 3456667899999999999999999999999998654
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.62 E-value=2.5e-14 Score=117.30 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Q psy16214 186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN 265 (470)
Q Consensus 186 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 265 (470)
+..+..+|.++...|++++|+..|++++..+|++..++..+ |.++...|++++|+..+++++...|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~a~~~~~~- 79 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR------------SLAYLRTECYGYALGDATRAIELDKK- 79 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcc-
Confidence 45677888888888888888888888888888887777776 88888888888888888888888887
Q ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHhCCHHHHHHHHHHHHhcC
Q psy16214 266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK--CFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
...++..+|.++..+|++++|+.++++++.++|++..++..++. .+...|++++|+..+.++..+.
T Consensus 80 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 80 ---YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 45668888999999999999999999999999988888755444 4778889999998888776553
No 159
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8e-16 Score=107.42 Aligned_cols=69 Identities=46% Similarity=0.819 Sum_probs=62.9
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
...++|.+||+...++..+|+++|+++++++|||++.. ..+.+.|+.|++||++|+||.+|..||....
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA------PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS------HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 45789999999999999999999999999999999875 3567899999999999999999999998654
No 160
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=1.4e-11 Score=122.54 Aligned_cols=305 Identities=7% Similarity=-0.096 Sum_probs=232.3
Q ss_pred CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---hHHHHHHH
Q psy16214 19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD---APTARSNL 95 (470)
Q Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 95 (470)
...+-+..|++.|..+|.+...|..+.......+.++.+...|++++...|.....|...+..-...++ ++.+..+|
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 345677889999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhcCC--CChHHHHHHHHHHHH---------------HHHHHHHHHHHh----------------------------
Q psy16214 96 KALQELDP--DNPAIAQESKALETM---------------AKNFEGASKAFE---------------------------- 130 (470)
Q Consensus 96 ~~~l~~~p--~~~~~~~~l~~~~~~---------------~~~~~~a~~~~~---------------------------- 130 (470)
++++...| .+..+|......... ...++.|+..+.
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99999884 566677655433211 122333332111
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-H-HHHH----------------------------------------------------
Q psy16214 131 ANDYRTAMFYLDRAMDQGVAS-K-TYKL---------------------------------------------------- 156 (470)
Q Consensus 131 ~~~~~~A~~~~~~~l~~~p~~-~-~~~~---------------------------------------------------- 156 (470)
+++.+.+..+|.+++.+ |.. . .++.
T Consensus 207 q~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 12345566677777653 321 1 1110
Q ss_pred -------------------HHHHHHHHcCC---------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH-H
Q psy16214 157 -------------------MKAECLAHLNR---------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV-N 207 (470)
Q Consensus 157 -------------------~~a~~~~~~~~---------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~ 207 (470)
....+-+...+ .......|++++...|.++++|+..+..+...|+.++|+ .
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 00000000011 123456799999999999999999999999999999997 9
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----------ccCc-------cch
Q psy16214 208 HFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID-----------ARNI-------NIN 269 (470)
Q Consensus 208 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----------p~~~-------~~~ 269 (470)
.|++++...|.+...+..+ +......|++++|..+|++++... |.+. ...
T Consensus 366 il~rAi~~~P~s~~Lwl~~------------a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSL------------SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 9999999999998888777 888889999999999999999753 3210 013
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCC
Q psy16214 270 SKLLHNRATVLFKMGKYNEAIADCTLALEK-DPNYLKALSRRCKCFHALGQ-YKECVIDAEKIYKMDNS 336 (470)
Q Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p~ 336 (470)
..+|...+.+..+.|..+.|...|.+|++. .+....+|...|.+....++ ++.|...|+++++..|+
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 457888899989999999999999999998 54557788888887777654 89999999999999997
No 161
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.62 E-value=5.3e-16 Score=106.67 Aligned_cols=67 Identities=45% Similarity=0.833 Sum_probs=60.5
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
...++|.+||+...++..+|+++|+++++++|||++++. .+.|+.|++||++|+||.+|..||.+++
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG--------AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC--------HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH--------HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 346899999999999999999999999999999998752 4679999999999999999999998753
No 162
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=5.4e-16 Score=108.68 Aligned_cols=70 Identities=43% Similarity=0.688 Sum_probs=63.1
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
...++|.+||+...++..+|+++|+++++++|||++...+ .++++|+.|++||++|+||.+|..||....
T Consensus 5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 74 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP-----KAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCT-----THHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH-----HHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence 4568999999999999999999999999999999987532 467899999999999999999999998654
No 163
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.2e-16 Score=113.99 Aligned_cols=70 Identities=34% Similarity=0.624 Sum_probs=63.2
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
...++|.+|||...++..+|+++||+++++||||++... ..++++|+.|++||++|+|+.+|..||....
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS-----AEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC-----SHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-----HHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 457899999999999999999999999999999998753 2477899999999999999999999998644
No 164
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.61 E-value=1.9e-13 Score=123.65 Aligned_cols=170 Identities=9% Similarity=0.065 Sum_probs=138.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC------hHHH
Q psy16214 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASK------TYKLMKAECLAHLNRLQEAQEIANSILATDKQN------PDAV 189 (470)
Q Consensus 122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~ 189 (470)
...+..++..|++++|+..+.+++...+... ..+..+|.++...|++++|+..+++++...+.. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4566678899999999999999999887654 345668888999999999999999999876544 4689
Q ss_pred HHHHHHHhccCChHHHHHHHHHHH---hhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--
Q psy16214 190 FVRGLCLYYDDKMDLAVNHFQLLL---KLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR-- 264 (470)
Q Consensus 190 ~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 264 (470)
..+|.+|...|++++|+.+|++++ +..|++.... ...+.+.|.++...|++++|+.++++++.+.+.
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~--------~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD--------VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch--------HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999 4556543211 011233499999999999999999999987643
Q ss_pred CccchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q psy16214 265 NININSKLLHNRATVLFKMGKYNEA-IADCTLALEK 299 (470)
Q Consensus 265 ~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 299 (470)
+....+.++.++|.++..+|++++| ..++++++.+
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 2223478899999999999999999 8889999875
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.61 E-value=1.8e-14 Score=122.16 Aligned_cols=124 Identities=26% Similarity=0.284 Sum_probs=114.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh----------------HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA----------------AYYGNRAACYMMLGMYTYALDDAKLAVS 66 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~g~~~~A~~~~~~al~ 66 (470)
.+..+..+|..++..|+|++|+..|++++...|.++ .++.++|.++..+|++++|+..++++++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 466799999999999999999999999999999887 8999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 67 LDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS 126 (470)
Q Consensus 67 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~ 126 (470)
++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...+....+.
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877766554443
No 166
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=107.47 Aligned_cols=71 Identities=52% Similarity=0.784 Sum_probs=63.9
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
...++|.+||+...++..+|+++|++++++||||++... .+.++++|+.|++||++|+||.+|..||....
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN----KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT----HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 457899999999999999999999999999999998752 35678899999999999999999999998543
No 167
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.60 E-value=2.4e-14 Score=112.07 Aligned_cols=117 Identities=35% Similarity=0.476 Sum_probs=111.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMA 119 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 119 (470)
..+|++++|+..+++++++.|+++.++..++.++...
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888775443
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.60 E-value=1.9e-14 Score=112.65 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA---AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLIR 77 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 77 (470)
++.++.+|..++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+..+++++..+|++ +.+++.
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 45688999999999999999999999999999987 799999999999999999999999999999999 899999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 78 QIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 78 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
+|.++..+|++++|+..|++++...|+++.+......+
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 99999999999999999999999999998876555554
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.60 E-value=3.3e-14 Score=120.92 Aligned_cols=162 Identities=18% Similarity=0.102 Sum_probs=122.5
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC------ChHHHHHHHHHHHHHHHHH
Q psy16214 163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP------DHAKAKETYKRAKLLKAKK 236 (470)
Q Consensus 163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~~~~ 236 (470)
+..|++++|...++.+....+..+.++..+|.++...|++++|+..+++++.... ....++..+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l---------- 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQV---------- 72 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH----------
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH----------
Confidence 4567888888855544443335677888889999999999999999988887432 223333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh---cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHH
Q psy16214 237 EEGNEKFVAGKNQEAFDIYTEALKI---DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP--NY----LKAL 307 (470)
Q Consensus 237 ~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~ 307 (470)
|.++...|++++|+..+++++.. .++++.....++.++|.++..+|++++|+.++++++.+.+ .+ ..++
T Consensus 73 --~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 150 (203)
T 3gw4_A 73 --GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAF 150 (203)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999987 3323323567899999999999999999999999997632 22 3457
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 308 SRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 308 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
..+|.++...|++++|+..+++++++...
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988654
No 170
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.59 E-value=2.8e-14 Score=112.18 Aligned_cols=121 Identities=19% Similarity=0.139 Sum_probs=81.6
Q ss_pred CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262 (470)
Q Consensus 183 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 262 (470)
|.++..++.+|.++...|++++|+..+++++..+|++..++..+ |.++...|++++|+.++++++...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR------------AACYTKLLEFQLALKDCEECIQLE 80 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHH------------HHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhC
Confidence 44456666666666666677777777776666666666666555 666666677777777777777666
Q ss_pred ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ 319 (470)
Q Consensus 263 p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 319 (470)
|. ...++..+|.++..+|++++|+.++++++..+|.+..++..++.++..+|+
T Consensus 81 ~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 PT----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred CC----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 66 344566777777777777777777777777777777777777777666553
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.59 E-value=3e-14 Score=116.84 Aligned_cols=95 Identities=33% Similarity=0.394 Sum_probs=92.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL 317 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 317 (470)
.|.+++..|++++|+.+|++++.++|. ...++.++|.++..+|++++|+.+|+++++++|+++.+++.+|.++..+
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIAPA----NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCc----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 399999999999999999999999999 4677999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q psy16214 318 GQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 318 g~~~~A~~~~~~a~~~~p~ 336 (470)
|++++|+.+|+++++++|+
T Consensus 93 g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp TCHHHHHHHHHHHHHHHSS
T ss_pred cCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999997
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.59 E-value=1.9e-14 Score=138.33 Aligned_cols=127 Identities=25% Similarity=0.354 Sum_probs=115.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---------------AAYYGNRAACYMMLGMYTYALDDAKLAVSL 67 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 67 (470)
.+..++.+|..++..|+|++|+..|++++..+|.+ ..+++++|.|+..+|++++|+..|++++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35689999999999999999999999999999988 689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF 129 (470)
Q Consensus 68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 129 (470)
+|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++...+.+..+...+
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888777666543
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.6e-14 Score=112.75 Aligned_cols=114 Identities=28% Similarity=0.373 Sum_probs=108.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQ 78 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 78 (470)
..+..++.+|..++..|+|++|+.+|++++..+|++ ..++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 357889999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 79 IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 79 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
|.++..+|++++|+..|++++.++|++..++..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999887766655
No 174
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=1.3e-15 Score=108.77 Aligned_cols=69 Identities=42% Similarity=0.628 Sum_probs=62.3
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
...++|.+||+...++..+|+++||++++++|||++.. ..++++|+.|++||++|+||.+|..||...+
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD------PGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS------TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 34689999999999999999999999999999999876 2467889999999999999999999998543
No 175
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.58 E-value=1.1e-13 Score=125.19 Aligned_cols=169 Identities=11% Similarity=0.059 Sum_probs=135.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh------HHHH
Q psy16214 123 EGASKAFEANDYRTAMFYLDRAMDQGVASKT------YKLMKAECLAHLNRLQEAQEIANSILATDKQNP------DAVF 190 (470)
Q Consensus 123 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~ 190 (470)
..+..++..+++++|+..+++++...+..+. ++..+|.++...+++++|+..+++++...+... .++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3456678899999999999999998877665 333588888888999999999999998655433 3789
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc-
Q psy16214 191 VRGLCLYYDDKMDLAVNHFQLLLKLAP---DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI- 266 (470)
Q Consensus 191 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~- 266 (470)
.+|.+|...|++++|+.+|+++++... .+... ....+.+.|.++...|++++|+.++++++.+.+...
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF--------DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH--------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 999999999999999999999996321 21111 111223449999999999999999999998876532
Q ss_pred -cchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q psy16214 267 -NINSKLLHNRATVLFKMG-KYNEAIADCTLALEK 299 (470)
Q Consensus 267 -~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 299 (470)
...+.++.++|.++..+| .+++|+.++++++.+
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 224789999999999999 579999999999976
No 176
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.58 E-value=2.7e-14 Score=111.83 Aligned_cols=122 Identities=20% Similarity=0.111 Sum_probs=89.4
Q ss_pred CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262 (470)
Q Consensus 183 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 262 (470)
|.++..+..+|.++...|++++|+..+++++...|++..++..+ |.++...|++++|+..+++++...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~ 76 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNR------------AAAYSKLGNYAGAVQDCERAICID 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHH------------HHHHHHhhchHHHHHHHHHHHhcC
Confidence 44456677777777777777777777777777777776666666 777777777777777777777777
Q ss_pred ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q psy16214 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY 320 (470)
Q Consensus 263 p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 320 (470)
|++ ..++..+|.++..+|++++|+.++++++..+|+++.++..++.++..+|++
T Consensus 77 ~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 PAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred ccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 763 455777777777777777777777777777777777777777777777664
No 177
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.58 E-value=9.7e-16 Score=111.41 Aligned_cols=68 Identities=56% Similarity=0.829 Sum_probs=62.0
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE 427 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~ 427 (470)
.++|.+||+..+++.++|+++|+++++++|||++... ++.++++|+.|++||++|+||.+|..||..+
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~----~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g 69 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN----KEFAEKKFKEVAEAYEVLSDKHKREIYDRYG 69 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC----CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 5799999999999999999999999999999998763 3467889999999999999999999999843
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.57 E-value=2e-15 Score=145.16 Aligned_cols=157 Identities=18% Similarity=0.127 Sum_probs=107.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH---HHHHHHHHHHHHHHHHHH
Q psy16214 165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK---ETYKRAKLLKAKKEEGNE 241 (470)
Q Consensus 165 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~~~~~~~~~~~~~ 241 (470)
++++++|+..+..++...|..+..+..+|.+++..|++++|+..|++++.++|.+.... ...........+.+.|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666677777777777777777777777777777776652100 000000011222333888
Q ss_pred HHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q psy16214 242 KFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYK 321 (470)
Q Consensus 242 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 321 (470)
+...+++++|+..|++++.++|+ +..+++++|.++..+|++++|+.+|+++++++|++..++..++.++..+++++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA----NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887 45668888888888888888888888888888888888888888888888887
Q ss_pred HHHH
Q psy16214 322 ECVI 325 (470)
Q Consensus 322 ~A~~ 325 (470)
+|..
T Consensus 403 ~a~~ 406 (457)
T 1kt0_A 403 ERDR 406 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 179
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.56 E-value=1.3e-13 Score=106.92 Aligned_cols=114 Identities=27% Similarity=0.339 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALET 117 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 117 (470)
..|++++|+..+++++...|+++.++..++.++.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999998888777643
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.8e-13 Score=131.17 Aligned_cols=233 Identities=9% Similarity=0.025 Sum_probs=144.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.|......|..+...|+|++|++.|.++++..|.........+......+..+ .++..+|.+|
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~al~~l~~~y 65 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE-----------------TSILELGQLY 65 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH-----------------HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH-----------------HHHHHHHHHH
Confidence 46677788888888899999999999888887765332211111111111111 1234455555
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ------GVASKTYKL 156 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~ 156 (470)
...|++++|++++.+++...+........ ..+. ...+......+++++|+..+..++.. .+....++.
T Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (434)
T 4b4t_Q 66 VTMGAKDKLREFIPHSTEYMMQFAKSKTV-KVLK-----TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI 139 (434)
T ss_dssp HHHTCHHHHHHHHHHTHHHHHTSCHHHHH-HHHH-----HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHccchHHH-HHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 55555555555555555443332221100 0000 00011122345556666666555544 223356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcC------CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q psy16214 157 MKAECLAHLNRLQEAQEIANSILATD------KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK 230 (470)
Q Consensus 157 ~~a~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 230 (470)
.+|.++...|+|++|+..+.+++... +...+++..++.++...|++++|...+++++...+...........+
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~- 218 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL- 218 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH-
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH-
Confidence 89999999999999999999987652 33357899999999999999999999999987643221111111111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy16214 231 LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA 263 (470)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 263 (470)
....|..+...+++.+|..+|.+++...+
T Consensus 219 ----~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 219 ----DLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp ----HHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 12238889999999999999999987543
No 181
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.56 E-value=7.5e-15 Score=121.86 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=72.2
Q ss_pred ccchhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhcc---CCCCC
Q psy16214 355 VKDYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYD---RGEDI 429 (470)
Q Consensus 355 ~~~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd---~~~~~ 429 (470)
..+||.+||++.. ++..+|+++||++++++|||++.+.++.+++.+.++|+.|++||++|+||.+|+.|| .|.+.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~ 121 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEI 121 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCCCc
Confidence 4689999999986 689999999999999999999998777778889999999999999999999999998 45554
Q ss_pred cCCCCCCCCCc
Q psy16214 430 MEDSGMGGHAG 440 (470)
Q Consensus 430 ~~~~~~~~~~~ 440 (470)
... +....||
T Consensus 122 ~~e-~~~~~d~ 131 (207)
T 3bvo_A 122 PER-TDYEMDR 131 (207)
T ss_dssp CSS-CSSSSCH
T ss_pred ccc-cccCCCH
Confidence 432 2334677
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.56 E-value=8.7e-15 Score=134.94 Aligned_cols=139 Identities=25% Similarity=0.352 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh-----------------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA-----------------AYYGNRAACYMMLGMYTYALDDAKLAV 65 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~g~~~~A~~~~~~al 65 (470)
.+..++.+|..++..|+|++|+..|++++...|++. .+++++|.++..+|++++|+..|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999877 489999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214 66 SLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM 145 (470)
Q Consensus 66 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 145 (470)
+++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+.. ...+..+++...+.+++
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~-----------~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE-----------QEKALYQKQKEMYKGIF 326 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988877766532 22345566667777777
Q ss_pred HhCCCCH
Q psy16214 146 DQGVASK 152 (470)
Q Consensus 146 ~~~p~~~ 152 (470)
...|.++
T Consensus 327 ~~~p~~~ 333 (338)
T 2if4_A 327 KGKDEGG 333 (338)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 7777654
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.55 E-value=9e-14 Score=129.48 Aligned_cols=125 Identities=26% Similarity=0.345 Sum_probs=116.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----------------cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAIS----------------VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVS 66 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 66 (470)
.+..+..+|..++..|+|++|+..|+++++ .+|.++.++.++|.+++.+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 356799999999999999999999999998 7888899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214 67 LDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASK 127 (470)
Q Consensus 67 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 127 (470)
++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.+....+....+..
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877776665543
No 184
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=6.5e-15 Score=109.54 Aligned_cols=70 Identities=47% Similarity=0.712 Sum_probs=63.1
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
...++|.+||+...++..+|+++|+++++++|||++.+. ..++++|+.|++||++|+||.+|..||....
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-----PEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 346899999999999999999999999999999998752 3578899999999999999999999997553
No 185
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-15 Score=112.02 Aligned_cols=69 Identities=32% Similarity=0.612 Sum_probs=62.7
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE 427 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~ 427 (470)
...++|.+||+...++..+|+++||++++++|||++.+.+ .++++|+.|++||++|+||.+|..||...
T Consensus 18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 86 (112)
T 2ctq_A 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP-----KAVETFQKLQKAKEILTNEESRARYDHWR 86 (112)
T ss_dssp CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCS-----THHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHhh
Confidence 4579999999999999999999999999999999987522 47889999999999999999999999854
No 186
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=7e-14 Score=108.01 Aligned_cols=95 Identities=11% Similarity=-0.012 Sum_probs=88.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL 317 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 317 (470)
.|..+...|++++|+..|+++++.+|+ .+.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 399999999999999999999999999 5677999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q psy16214 318 GQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 318 g~~~~A~~~~~~a~~~~p~ 336 (470)
|++++|+..|+++++++|+
T Consensus 99 g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999986
No 187
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.54 E-value=3.6e-11 Score=116.17 Aligned_cols=320 Identities=8% Similarity=-0.063 Sum_probs=185.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC-hHHHHHHHHHHHhc---CCCCHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGM-YTYALDDAKLAVSL---DPRFSKGLIRQ 78 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~l 78 (470)
.+...+..+...+-.|+++.+..+|++++...| +..+|..........+. .+.....|+.++.. +|.+...|...
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 456778888888888999999999999999988 67788887777777663 35566788888874 78888888888
Q ss_pred HHHHH----HcCChHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCC-
Q psy16214 79 IKCNI----ALGDAPTARSNLKALQELDPDNPA-IAQESKALETMAKNFEGASKAF--EANDYRTAMFYLDRAMDQGVA- 150 (470)
Q Consensus 79 a~~~~----~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~l~~~p~- 150 (470)
+..+. ..++.+.+..+|++++...+.+.. .|..........+ ...+...+ ....+..|...+..+....+.
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~-~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELN-KITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhc-cccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 87654 346788999999999995333322 2222222111000 00000000 001122222222222222111
Q ss_pred CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214 151 SKTYKLMKAECLAHL--NR-----LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK 223 (470)
Q Consensus 151 ~~~~~~~~a~~~~~~--~~-----~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 223 (470)
+...|......-... +- ...+...|++++...|..+.+|+..+..+...|+.+.|...|++++.. |.+...+
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~ 249 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS 249 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH
Confidence 222222222211110 00 122334444444444444444444444444444444444444444444 4443333
Q ss_pred HHHHHHH----------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHH
Q psy16214 224 ETYKRAK----------------------------LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN 275 (470)
Q Consensus 224 ~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 275 (470)
..+.... ....+..-+....+.+..+.|...|+++ . .|.. ...+|..
T Consensus 250 ~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~---~~~v~i~ 324 (493)
T 2uy1_A 250 LYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV---GPHVFIY 324 (493)
T ss_dssp HHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC---CHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC---ChHHHHH
Confidence 2221110 0001111244455567788899999998 3 3331 3456666
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214 276 RATVLFKMG-KYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI 330 (470)
Q Consensus 276 la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 330 (470)
.|.+....+ +.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 676666655 5889999999999988988888888888888899999999999887
No 188
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.54 E-value=1.1e-14 Score=117.80 Aligned_cols=71 Identities=21% Similarity=0.446 Sum_probs=66.2
Q ss_pred ccchhhhccCCCCCC--HHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214 355 VKDYYKILGVTKNAS--SDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR 425 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~--~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~ 425 (470)
..+||.+||++..++ ..+|+++||+++++||||+++..++..+..+..+|..|++||++|+||.+|..||.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~ 75 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLL 75 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 468999999999887 99999999999999999999988777888899999999999999999999999995
No 189
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.54 E-value=4.1e-13 Score=103.99 Aligned_cols=117 Identities=31% Similarity=0.440 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Q psy16214 186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN 265 (470)
Q Consensus 186 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 265 (470)
+.+++.+|.++...|++++|+..+++++...|++..++..+ |.++...|++++|+..+++++...|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL------------GNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 55667777777777777777777777777777666666555 777777777777777777777776663
Q ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214 266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318 (470)
Q Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 318 (470)
..++..+|.++...|++++|+..+++++..+|+++.++..++.++...|
T Consensus 77 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 ----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 4457777777777777777777777777777777777777777766543
No 190
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.54 E-value=1.6e-13 Score=107.44 Aligned_cols=116 Identities=24% Similarity=0.269 Sum_probs=107.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-------SKG 74 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 74 (470)
..+..++.+|..++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999999998877 899
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy16214 75 LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETM 118 (470)
Q Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 118 (470)
++.+|.++..+|++++|+..|+++++..| ++.....++.+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 57777776666443
No 191
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.53 E-value=6.5e-15 Score=109.99 Aligned_cols=72 Identities=33% Similarity=0.563 Sum_probs=65.9
Q ss_pred cccchhhhccCCCCC-CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214 354 EVKDYYKILGVTKNA-SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE 427 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~-~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~ 427 (470)
...++|.+||+...+ +..+|+++||++++++|||++.+ +..++.++++|+.|++||++|+||.+|..||...
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~--~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~ 85 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN--KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYL 85 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS--HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 357899999999999 99999999999999999999876 5566778999999999999999999999999854
No 192
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=115.82 Aligned_cols=75 Identities=31% Similarity=0.525 Sum_probs=67.7
Q ss_pred ccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCcc-HHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNAT-QAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE 427 (470)
Q Consensus 353 ~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~-~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~ 427 (470)
....++|.+||++..++..+|+++||++++++|||++...+ +..++.+.++|+.|++||++|+||.+|+.||...
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45678999999999999999999999999999999998764 3667778999999999999999999999999643
No 193
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.53 E-value=1.3e-14 Score=116.95 Aligned_cols=70 Identities=20% Similarity=0.424 Sum_probs=66.1
Q ss_pred chhhhccCCCCC--CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCC
Q psy16214 357 DYYKILGVTKNA--SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRG 426 (470)
Q Consensus 357 ~~y~~lg~~~~~--~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~ 426 (470)
+||.+||++..+ +..+|+++||+++++||||++++.++..+..+..+|..|++||++|+||.+|..||..
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 73 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS 73 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 689999999999 9999999999999999999999888888888999999999999999999999999973
No 194
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.53 E-value=1.5e-13 Score=108.77 Aligned_cols=106 Identities=29% Similarity=0.391 Sum_probs=70.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 318 (470)
|..++..|++++|+..|++++..+|. ...++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 16 g~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 91 (137)
T 3q49_B 16 GNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 91 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhCcC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 66666666666666666666666666 34456677777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCC------hhHHHHHHHHHH
Q psy16214 319 QYKECVIDAEKIYKMDNS------RENHNFLEEAKR 348 (470)
Q Consensus 319 ~~~~A~~~~~~a~~~~p~------~~~~~~l~~~~~ 348 (470)
++++|+..|+++++++|+ ..+...+..+..
T Consensus 92 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 92 SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 777777777777766654 334444444443
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.52 E-value=3e-14 Score=112.46 Aligned_cols=97 Identities=11% Similarity=0.117 Sum_probs=89.3
Q ss_pred HhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 15 YKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMY----------TYALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
-+.+.|++|+..++++++++|+++.+|+++|.++..++++ ++|+..|+++++++|++..+|+.+|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3557899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214 85 LG-----------DAPTARSNLKALQELDPDNPAIAQE 111 (470)
Q Consensus 85 ~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~ 111 (470)
+| ++++|+.+|+++++++|++...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 85 8999999999999999998765433
No 196
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.52 E-value=4e-13 Score=114.13 Aligned_cols=160 Identities=16% Similarity=0.110 Sum_probs=128.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh------cCCCChHHHHHHHHHHhccCCh
Q psy16214 129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA------TDKQNPDAVFVRGLCLYYDDKM 202 (470)
Q Consensus 129 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~------~~p~~~~~~~~la~~~~~~g~~ 202 (470)
+..|++++|...++.+....+....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 5678899999865555443336678999999999999999999999999998 3444567899999999999999
Q ss_pred HHHHHHHHHHHhh---CCChH----HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHH
Q psy16214 203 DLAVNHFQLLLKL---APDHA----KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLL 273 (470)
Q Consensus 203 ~~A~~~~~~~l~~---~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~ 273 (470)
++|+..+++++.. .++++ .++.. .|.++...|++++|+.++++++...+. ++.....++
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~------------lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 150 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYE------------VATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAF 150 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH------------HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHH------------HHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 9999999999987 44322 22333 399999999999999999999977543 333345678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214 274 HNRATVLFKMGKYNEAIADCTLALEKD 300 (470)
Q Consensus 274 ~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (470)
.++|.++...|++++|+.++++++++.
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999874
No 197
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.51 E-value=1.3e-13 Score=104.70 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=100.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR--FSKGLIRQIK 80 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~ 80 (470)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|. +..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHc-CChHHHHHHHHHHHhcCCCCh
Q psy16214 81 CNIAL-GDAPTARSNLKALQELDPDNP 106 (470)
Q Consensus 81 ~~~~~-g~~~~A~~~~~~~l~~~p~~~ 106 (470)
++..+ |++++|+.++.+++...|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999 999999999999999998764
No 198
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.51 E-value=5.1e-15 Score=109.82 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=59.1
Q ss_pred ccchhhhccCCCCCCH--HHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 355 VKDYYKILGVTKNASS--DDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~--~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
..++|.+|||...++. .+|+++||++++++|||++.+ +++|+.|++||++|+||.+|+.||..++
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---------~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---------TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---------HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 4689999999999998 999999999999999999875 3579999999999999999999997543
No 199
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=8.2e-13 Score=101.13 Aligned_cols=94 Identities=28% Similarity=0.465 Sum_probs=47.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 318 (470)
|..+...|++++|+..+++++...|.+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++..+|
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 444445555555555555555444442 2334445555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhcCCC
Q psy16214 319 QYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 319 ~~~~A~~~~~~a~~~~p~ 336 (470)
++++|+..++++++++|+
T Consensus 87 ~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp CHHHHHHHHHHHHTTCTT
T ss_pred hHHHHHHHHHHHHHcCCC
Confidence 555555555555555544
No 200
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.49 E-value=1.4e-14 Score=100.38 Aligned_cols=65 Identities=18% Similarity=0.452 Sum_probs=58.0
Q ss_pred cccchhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214 354 EVKDYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE 427 (470)
Q Consensus 354 ~~~~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~ 427 (470)
+..++|.+||+... ++..+|+++||++++++|||++.+ .++|+.|++||++|+|+.+|.+++-|.
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~---------~~~f~~i~~AYe~L~~~~~r~~~~~g~ 75 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQELNSLWGTFKTEVYNLRMNLGG 75 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---------HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------HHHHHHHHHHHHHHhhHHHHHHHhcCC
Confidence 44688999999999 999999999999999999999765 468999999999999999999865443
No 201
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.49 E-value=2.9e-14 Score=121.81 Aligned_cols=68 Identities=37% Similarity=0.693 Sum_probs=61.6
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
.++|.+||+..+++..+|+++||+++++||||+++..+ .++++|+.|++||++|+||.+|+.||..++
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~-----~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~ 69 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP-----NAHGDFLKINRAYEVLKDEDLRKKYDKYGE 69 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCT-----THHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh-----HHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 57999999999999999999999999999999987532 477899999999999999999999998544
No 202
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.49 E-value=6.2e-14 Score=107.73 Aligned_cols=94 Identities=19% Similarity=0.137 Sum_probs=86.4
Q ss_pred hcCCHHHHHHHHHHHhhc---CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214 16 KLKQYSKALKCYSEAISV---CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR 92 (470)
Q Consensus 16 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 92 (470)
..|++++|+.+|+++++. +|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHH
Q psy16214 93 SNLKALQELDPDNPAIA 109 (470)
Q Consensus 93 ~~~~~~l~~~p~~~~~~ 109 (470)
..+++++...|+++.+.
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999999999998764
No 203
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.49 E-value=6.5e-13 Score=103.85 Aligned_cols=114 Identities=25% Similarity=0.364 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q psy16214 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-------LKALS 308 (470)
Q Consensus 236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 308 (470)
...|..+...|++++|+..+++++...|.+ ..++..+|.++...|++++|+.++++++...|++ +.+++
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 334999999999999999999999999984 5679999999999999999999999999998877 99999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcc
Q psy16214 309 RRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRS 353 (470)
Q Consensus 309 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~ 353 (470)
.+|.++..+|++++|+.+|++++++.|+......+..+...+++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999887888887777666543
No 204
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8.1e-13 Score=105.89 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=63.6
Q ss_pred CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH---AKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA 258 (470)
Q Consensus 182 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 258 (470)
.|.+...++.+|.++...|++++|+..|++++...|++ ..++..+ |.++...+++++|+..++++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~ 91 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNR------------AACHLKLEDYDKAETEASKA 91 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHH------------HHHHHHHccHHHHHHHHHHH
Confidence 34455566666666666666666666666666666654 3333333 55555555555555555555
Q ss_pred HhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 259 LKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC 313 (470)
Q Consensus 259 l~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (470)
+...|++ ..+++.+|.++..+|++++|+.++++++.++|++..++..++.+
T Consensus 92 ~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 92 IEKDGGD----VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHTSCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HhhCccC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 5555542 33455555555555555555555555555555555555544444
No 205
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.48 E-value=6.1e-15 Score=103.86 Aligned_cols=76 Identities=24% Similarity=0.414 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCC
Q psy16214 337 RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416 (470)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d 416 (470)
.+++.+|..+...+..+ ..+|++||+...+++.+||+|||++++++||||+++.+ .+..++++|+.|++||+||.+
T Consensus 16 ~~ir~lL~~l~~~L~~~--~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~--~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 16 RNIRALLSTMHTVLWAG--ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQP--YEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp TCHHHHHHHGGGTSCTT--CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTST--THHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccc--ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch--hHhHHHHHHHHHHHHHHHHHh
Confidence 44566666665555543 47899999999999999999999999999999988642 224689999999999999865
No 206
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.48 E-value=1.4e-14 Score=139.92 Aligned_cols=135 Identities=14% Similarity=0.201 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Q psy16214 186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN 265 (470)
Q Consensus 186 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 265 (470)
+..+..+|.++...|++++|+..|+++++.+|++..++..+ |.++...|++++|+..++++++++|+
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~l~p~- 72 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR------------SLAYLRTECYGYALGDATRAIELDKK- 72 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHSCTT-
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHHhCCC-
Confidence 34556677788888888888888888888888888888777 88888888888888888888888888
Q ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHh
Q psy16214 266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC--FHALGQYKECVIDAE-----------KIYK 332 (470)
Q Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~a~~ 332 (470)
.+.++.++|.++..+|++++|+..++++++++|++..++..++.+ +...|++++|+..++ ++++
T Consensus 73 ---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~ 149 (477)
T 1wao_1 73 ---YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMT 149 (477)
T ss_dssp ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCC
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcc
Confidence 456788889999999999999999999999988888888888888 788889999999888 7777
Q ss_pred cCCC
Q psy16214 333 MDNS 336 (470)
Q Consensus 333 ~~p~ 336 (470)
+.|+
T Consensus 150 ~~~~ 153 (477)
T 1wao_1 150 IEDE 153 (477)
T ss_dssp CCTT
T ss_pred cccc
Confidence 7765
No 207
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.4e-14 Score=101.59 Aligned_cols=63 Identities=38% Similarity=0.522 Sum_probs=56.9
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhh
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSR 422 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~ 422 (470)
...++|++|||...++..+|+++||+++++||||++.. ..++++|+.|++||++|+|+.+|..
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA------PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC------TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHHCCcccccC
Confidence 34789999999999999999999999999999999875 2367789999999999999999874
No 208
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=5.1e-14 Score=135.91 Aligned_cols=130 Identities=32% Similarity=0.517 Sum_probs=113.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.++.+..+|..++..|+|++|+.+|+++++.+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.+|
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLD 142 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 142 (470)
..+|++++|+..|+++++++|++..++..++.+. .+...+++++|+..++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~----------~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECN----------KIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH----------HHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------HHHHHHHHHHHhcccc
Confidence 9999999999999999999999998887766652 2334466677777777
No 209
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.46 E-value=2.2e-12 Score=100.77 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=69.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY---LKALSRRCKCFH 315 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 315 (470)
|..++..|++++|+..|++++...|+++. ...+++.+|.++...|++++|+..+++++..+|++ +.+++.+|.++.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVY-TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 66677777777777777777777776542 23567777777777777777777777777777777 677777777777
Q ss_pred HhCCHHHHHHHHHHHHhcCCC
Q psy16214 316 ALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 316 ~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.+|++++|+..|+++++..|+
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT
T ss_pred HcCCHHHHHHHHHHHHHHCCC
Confidence 777777777777777777776
No 210
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.46 E-value=5.4e-12 Score=120.75 Aligned_cols=203 Identities=10% Similarity=0.002 Sum_probs=166.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q psy16214 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASK-----------------TYKLMKAECLAHLNRLQEAQEIANSILATDK 183 (470)
Q Consensus 121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 183 (470)
.++.|..+...|+|++|+..+.++++..|... .++..+|.+|...|++++|++.+.+++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999877653 3578899999999999999999999988766
Q ss_pred CChH------HHHHHHHHHhccCChHHHHHHHHHHHhhCCC------hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16214 184 QNPD------AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD------HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEA 251 (470)
Q Consensus 184 ~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 251 (470)
.... +...++.++...|++++|+.++++++...+. ...+...+ |.++...|++.+|
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A 154 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL------------ATLHYQKKQYKDS 154 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH------------HHHHHHHTCHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH------------HHHHHHccChHHH
Confidence 5433 4567888889999999999999999875432 22333344 9999999999999
Q ss_pred HHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHhCCHHH
Q psy16214 252 FDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP---NY----LKALSRRCKCFHALGQYKE 322 (470)
Q Consensus 252 ~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~la~~~~~~g~~~~ 322 (470)
+.++++++..... +......++..++.+|..+|++++|...+++++...+ .. ...+...|.++...+++++
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999865322 2233578899999999999999999999999987732 22 4567788999999999999
Q ss_pred HHHHHHHHHhcCC
Q psy16214 323 CVIDAEKIYKMDN 335 (470)
Q Consensus 323 A~~~~~~a~~~~p 335 (470)
|..+|.++++..+
T Consensus 235 A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 235 AFSYFFESFESYH 247 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987643
No 211
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.45 E-value=7e-13 Score=100.53 Aligned_cols=105 Identities=15% Similarity=0.278 Sum_probs=97.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214 216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTL 295 (470)
Q Consensus 216 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (470)
+|++..++..+ |.++...|++++|+..+++++...|. ...++..+|.++..+|++++|+..+++
T Consensus 2 ~p~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~ 65 (112)
T 2kck_A 2 VDQNPEEYYLE------------GVLQYDAGNYTESIDLFEKAIQLDPE----ESKYWLMKGKALYNLERYEEAVDCYNY 65 (112)
T ss_dssp CCSSTTGGGGH------------HHHHHSSCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHH------------HHHHHHhhhHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 56666666666 99999999999999999999999998 456799999999999999999999999
Q ss_pred HHHhCCC--CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCC
Q psy16214 296 ALEKDPN--YLKALSRRCKCFHAL-GQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 296 al~~~p~--~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~ 336 (470)
+++.+|+ +..++..+|.++..+ |++++|+.++++++...|+
T Consensus 66 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 66 VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999 999999999999999 9999999999999999986
No 212
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.45 E-value=2.1e-13 Score=125.73 Aligned_cols=147 Identities=15% Similarity=0.120 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16214 186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET-----YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK 260 (470)
Q Consensus 186 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 260 (470)
...+..+|.+++..|++++|+..|++++...|++...... .........+.+.|.++...|++++|+.+|++++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777765410000 00000001122236666666666666666666666
Q ss_pred hcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 261 IDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC-FHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 261 ~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++|+ +..+++++|.++..+|++++|+.+|+++++++|++..++..++.+ ....+..+++...|++++...|+
T Consensus 259 ~~p~----~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 259 EEEK----NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred hCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 6665 344566666666666666666666666666666666666666655 23344555556666666666554
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.42 E-value=6.1e-13 Score=105.00 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=83.0
Q ss_pred hcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY----------NEAIADCTLALEKDPNYLKALSRRCKC 313 (470)
Q Consensus 244 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~ 313 (470)
+.+.+++|++.++++++++|+ .+.+|.++|.++..++++ ++|+..|+++++++|++..+|+++|.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 346789999999999999999 567799999999999875 599999999999999999999999999
Q ss_pred HHHhC-----------CHHHHHHHHHHHHhcCCCh
Q psy16214 314 FHALG-----------QYKECVIDAEKIYKMDNSR 337 (470)
Q Consensus 314 ~~~~g-----------~~~~A~~~~~~a~~~~p~~ 337 (470)
|..+| ++++|+.+|++|++++|+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 99885 8999999999999999984
No 214
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.42 E-value=2.3e-12 Score=120.01 Aligned_cols=129 Identities=20% Similarity=0.315 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc
Q psy16214 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI 266 (470)
Q Consensus 187 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 266 (470)
..+..+|.+++..|++++|+..|+++++..+..+ +....+......|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------------------~~~~~~~~~~~~~~-- 271 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------------------AAAEDADGAKLQPV-- 271 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------------------HHSCHHHHGGGHHH--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------------------cccChHHHHHHHHH--
Confidence 4567778888888888888888888877433211 00012222333343
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHH
Q psy16214 267 NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEE 345 (470)
Q Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~ 345 (470)
...++.++|.++..+|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+ ..+...+..
T Consensus 272 --~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 --ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349 (370)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555554 334444444
Q ss_pred HHHH
Q psy16214 346 AKRL 349 (470)
Q Consensus 346 ~~~~ 349 (470)
+...
T Consensus 350 ~~~~ 353 (370)
T 1ihg_A 350 VKQK 353 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 215
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.42 E-value=9.5e-13 Score=101.02 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=81.7
Q ss_pred hcCCHHHHHHHHHHHHhh---cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q psy16214 244 VAGKNQEAFDIYTEALKI---DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY 320 (470)
Q Consensus 244 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 320 (470)
..|++++|+.+|+++++. +|+ ...++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD----LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH
Confidence 358899999999999999 566 5788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChh
Q psy16214 321 KECVIDAEKIYKMDNSRE 338 (470)
Q Consensus 321 ~~A~~~~~~a~~~~p~~~ 338 (470)
++|+..++++++..|+..
T Consensus 78 ~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhCCCcH
Confidence 999999999999999743
No 216
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.41 E-value=1.2e-14 Score=115.52 Aligned_cols=67 Identities=24% Similarity=0.336 Sum_probs=57.7
Q ss_pred ccccchhhhccCCCCCC--HHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 353 SEVKDYYKILGVTKNAS--SDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 353 ~~~~~~y~~lg~~~~~~--~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
.+..++|++||+..+++ .++|+++||++++++|||++++ +++|+.|++||++|+||.+|+.||..++
T Consensus 8 ~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---------~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 8 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 34578999999999998 5999999999999999999765 3579999999999999999999999664
No 217
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.41 E-value=6.9e-14 Score=102.39 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCC--ccHHhhHHHHHHHHHHHHHHhhcC
Q psy16214 338 ENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTN--ATQAQKLEQEKLFKEVGEAYGILS 415 (470)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~--~~~~~~~~~~~~~~~i~~ay~~l~ 415 (470)
++..+|..+...+. ...+||.+||+.. ++..+||++||++++++||||++. .+++.+..++++|+.|++||++|+
T Consensus 25 ~ir~lL~~l~~~l~--~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLs 101 (106)
T 3ag7_A 25 NIRSLLSTLQYILW--SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFN 101 (106)
T ss_dssp CHHHHHTTGGGTSC--TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc--ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHc
Confidence 44444444333222 2368999999996 999999999999999999999874 356677789999999999999999
Q ss_pred Chh
Q psy16214 416 DPT 418 (470)
Q Consensus 416 d~~ 418 (470)
|+.
T Consensus 102 d~~ 104 (106)
T 3ag7_A 102 TLG 104 (106)
T ss_dssp TTC
T ss_pred Ccc
Confidence 986
No 218
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.41 E-value=2.9e-12 Score=104.18 Aligned_cols=144 Identities=17% Similarity=0.105 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Q psy16214 186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN 265 (470)
Q Consensus 186 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 265 (470)
..++..+|.++...|++++|+.++++++...+....... ........|.++...|++++|+.++++++...+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 346777888888888888888888888876554322110 01122233889999999999999999998776542
Q ss_pred --ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214 266 --ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 266 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 335 (470)
+.....++.++|.++...|++++|+.++++++.+.+. ...++..+|.++...|++++|+.++++++++..
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 2224678889999999999999999999999977322 266888999999999999999999999998754
No 219
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.6e-13 Score=102.93 Aligned_cols=97 Identities=28% Similarity=0.389 Sum_probs=90.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF------SKGL 75 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 75 (470)
.+++.++.+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|++ ..++
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q psy16214 76 IRQIKCNIALGDAPTARSNLKAL 98 (470)
Q Consensus 76 ~~la~~~~~~g~~~~A~~~~~~~ 98 (470)
+.+|.++..+|+++.|+..++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 99999999999988887766554
No 220
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.40 E-value=1.6e-13 Score=109.78 Aligned_cols=66 Identities=26% Similarity=0.505 Sum_probs=59.8
Q ss_pred cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhc
Q psy16214 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423 (470)
Q Consensus 356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~y 423 (470)
.++|++||+...++..+|+++||++++++|||++...+. +..++++|+.|++||++|+|+.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~--e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY--EQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTT--HHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcch--HHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 589999999999999999999999999999999986432 236889999999999999999999887
No 221
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.39 E-value=1.4e-13 Score=97.04 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=55.8
Q ss_pred ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhh
Q psy16214 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKR 420 (470)
Q Consensus 355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~ 420 (470)
..++|++||+..+++.++|+++||+++++||||++.+. .+.++++|+.|++||++|+|...|
T Consensus 15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~----~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN----HDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc----hHHHHHHHHHHHHHHHHHHhhccc
Confidence 35789999999999999999999999999999998762 256789999999999999998777
No 222
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.36 E-value=6.5e-12 Score=102.05 Aligned_cols=144 Identities=14% Similarity=0.015 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh------HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNP------DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
.++..+|.++...|++++|+..+.+++...+... .++..+|.++...|++++|+..+++++...+.......
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-- 87 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV-- 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH--
Confidence 4677899999999999999999999998765432 48889999999999999999999999986544311110
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN--ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302 (470)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (470)
........|.++...|++++|+.++++++...+.. +.....++..+|.++..+|++++|+.++++++++...
T Consensus 88 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 88 ----EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 01122334999999999999999999999875432 2334678999999999999999999999999987543
No 223
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.31 E-value=2.1e-11 Score=93.09 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214 21 SKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE 100 (470)
Q Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 100 (470)
++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy16214 101 LDPDN 105 (470)
Q Consensus 101 ~~p~~ 105 (470)
+.|..
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 88753
No 224
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.6e-12 Score=88.08 Aligned_cols=57 Identities=26% Similarity=0.368 Sum_probs=50.8
Q ss_pred ccchhhhccCCC-CCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhh
Q psy16214 355 VKDYYKILGVTK-NASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKR 420 (470)
Q Consensus 355 ~~~~y~~lg~~~-~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~ 420 (470)
..++|++||+.. .++.++|+++||++++++|||++.+ ..+|+.|++||++|+|+..|
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~---------~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS---------PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC---------HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------HHHHHHHHHHHHHHhhhhhc
Confidence 357899999998 7999999999999999999999654 34899999999999998765
No 225
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.27 E-value=5.2e-11 Score=86.38 Aligned_cols=82 Identities=27% Similarity=0.340 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI 83 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 83 (470)
+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred Hc
Q psy16214 84 AL 85 (470)
Q Consensus 84 ~~ 85 (470)
.+
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 226
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.24 E-value=7.3e-11 Score=90.01 Aligned_cols=83 Identities=17% Similarity=0.120 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16214 250 EAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329 (470)
Q Consensus 250 ~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 329 (470)
+|+..|++++..+|++ ..++..+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|++
T Consensus 3 ~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5789999999999984 567999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC
Q psy16214 330 IYKMDNS 336 (470)
Q Consensus 330 a~~~~p~ 336 (470)
++++.|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 9999885
No 227
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.24 E-value=3.6e-08 Score=95.19 Aligned_cols=293 Identities=10% Similarity=-0.007 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHhhc---CCchhHHHHHHHHHHH----HcCChHHHHHHHHHHHhcCCCCHHHH
Q psy16214 4 AEKHKEDGNTQYKLK-QYSKALKCYSEAISV---CPNVAAYYGNRAACYM----MLGMYTYALDDAKLAVSLDPRFSKGL 75 (470)
Q Consensus 4 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~ 75 (470)
++.|..-.......+ ..+.....|+.++.. +|.+..+|......+. ..++.+.+...|++++..-+....-+
T Consensus 47 ~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~l 126 (493)
T 2uy1_A 47 LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSEL 126 (493)
T ss_dssp HHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHH
Confidence 344444444444444 235567788888864 6778888887776654 34678899999999999643333322
Q ss_pred HHHHHHHHH--------------cCChHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Q psy16214 76 IRQIKCNIA--------------LGDAPTARSNLKALQELDPD-NPAIAQESKALETMAKNFEGASKAFEAND------- 133 (470)
Q Consensus 76 ~~la~~~~~--------------~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------- 133 (470)
+..-..+.. ...+..|...+..+....+. +...|.. ...+ ..++
T Consensus 127 w~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~-------------y~~~-E~~~~~~~~~~ 192 (493)
T 2uy1_A 127 WKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAAR-------------LIDL-EMENGMKLGGR 192 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHH-------------HHHH-HHTCTTCCCHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHH-------------HHHH-HhcCCccCcch
Confidence 221111111 12233334444443332221 1112211 1111 1121
Q ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH----------------
Q psy16214 134 --YRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC---------------- 195 (470)
Q Consensus 134 --~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~---------------- 195 (470)
...+...|++++...|..+.+|...+..+...|+.+.|...|++++.. |.+...+...+..
T Consensus 193 ~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~ 271 (493)
T 2uy1_A 193 PHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC-
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999999999999999 9887666544433
Q ss_pred ------------------------HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHH
Q psy16214 196 ------------------------LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG-KNQE 250 (470)
Q Consensus 196 ------------------------~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (470)
..+.++.+.|...|.++ ...+....++... +...+..+ +.+.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~------------A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYC------------AFIEYYATGSRAT 338 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHH------------HHHHHHHHCCSHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHH------------HHHHHHHCCChHH
Confidence 11245566777777777 3222222233222 44444334 6999
Q ss_pred HHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214 251 AFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI 330 (470)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 330 (470)
|..+|+.+++..|+++ ..+...+......|+.+.|...|+++ +.....|......-...|+.+.+...++++
T Consensus 339 ar~ife~al~~~~~~~----~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 339 PYNIFSSGLLKHPDST----LLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999988854 34666778888999999999999997 456888888888888899999999989888
Q ss_pred Hh
Q psy16214 331 YK 332 (470)
Q Consensus 331 ~~ 332 (470)
++
T Consensus 411 ~~ 412 (493)
T 2uy1_A 411 MD 412 (493)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 228
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.23 E-value=2.2e-12 Score=104.63 Aligned_cols=67 Identities=25% Similarity=0.485 Sum_probs=58.5
Q ss_pred hcccccchhhhc------cCCC-CCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhc
Q psy16214 351 KRSEVKDYYKIL------GVTK-NASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423 (470)
Q Consensus 351 ~~~~~~~~y~~l------g~~~-~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~y 423 (470)
......+||.+| |+.. +++..+|+++||++++++|||++++ +..+|..|++||++|+||.+|..|
T Consensus 6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--------a~~~f~~i~~AY~vL~dp~~R~~Y 77 (181)
T 3uo3_A 6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--------GSEQSSTLNQAYHTLKDPLRRSQY 77 (181)
T ss_dssp -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--------CSSGGGSHHHHHHHHHSHHHHHHH
T ss_pred CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--------HHHHHHHHHHHHHHHcChHHHHHH
Confidence 345568999999 4554 8999999999999999999999875 456799999999999999999999
Q ss_pred cC
Q psy16214 424 DR 425 (470)
Q Consensus 424 d~ 425 (470)
|.
T Consensus 78 d~ 79 (181)
T 3uo3_A 78 ML 79 (181)
T ss_dssp HH
T ss_pred HH
Confidence 96
No 229
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.21 E-value=2.2e-11 Score=90.13 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVAA-YYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL 85 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 85 (470)
.+.+|..++..|++++|+..|+++++.+|+++. +++.+|.++..+|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999887744
Q ss_pred CChHHHHHHHHHHHhcCCCCh
Q psy16214 86 GDAPTARSNLKALQELDPDNP 106 (470)
Q Consensus 86 g~~~~A~~~~~~~l~~~p~~~ 106 (470)
+.+.+|+..|++++..+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 567788888888888777654
No 230
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.17 E-value=3.1e-10 Score=82.18 Aligned_cols=83 Identities=24% Similarity=0.245 Sum_probs=78.0
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy16214 35 PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA 114 (470)
Q Consensus 35 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 114 (470)
|.++.+++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++++|+++.++..++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHH
Q psy16214 115 LET 117 (470)
Q Consensus 115 ~~~ 117 (470)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 231
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.13 E-value=4.1e-10 Score=83.32 Aligned_cols=73 Identities=15% Similarity=-0.044 Sum_probs=64.9
Q ss_pred cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q psy16214 33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN 105 (470)
Q Consensus 33 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 105 (470)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4788999999999999999999999999999999999999999999999999999999999999999876644
No 232
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.13 E-value=2.3e-10 Score=84.72 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.+.+++.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 46779999999999999999999999999999999999999999999999999999999999999875
No 233
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.12 E-value=8e-10 Score=83.34 Aligned_cols=83 Identities=11% Similarity=0.082 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------hHHHH
Q psy16214 37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN------PAIAQ 110 (470)
Q Consensus 37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~ 110 (470)
++..+..+|.+++..|++++|+..|+++++++|+++.++..+|.++..+|++++|+..++++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999998 55555
Q ss_pred HHHHHHHHH
Q psy16214 111 ESKALETMA 119 (470)
Q Consensus 111 ~l~~~~~~~ 119 (470)
.++.++...
T Consensus 83 ~~~~~~~~~ 91 (111)
T 2l6j_A 83 RLELAQGAV 91 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554333
No 234
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.05 E-value=1.4e-11 Score=126.56 Aligned_cols=70 Identities=36% Similarity=0.650 Sum_probs=40.4
Q ss_pred cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED 428 (470)
Q Consensus 354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~ 428 (470)
...++|.+||+...++.++|+++||+++++||||++++. ..++++|+.|++||++|+||.+|+.||..++
T Consensus 19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~-----~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-----PNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp ----CHHHHTCCTTCCHHHHHHHHCC----------------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-----hHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 457899999999999999999999999999999998642 3577899999999999999999999999654
No 235
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.05 E-value=4.1e-09 Score=100.93 Aligned_cols=131 Identities=9% Similarity=-0.051 Sum_probs=108.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----
Q psy16214 192 RGLCLYYDDKMDLAVNHFQLLLK-----LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI----- 261 (470)
Q Consensus 192 la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 261 (470)
.+..+..+|++++|+..++++++ +.|+++.....+ .+.|.+|..+|+|++|+.++++++.+
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~---------~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l 385 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLL---------SIASEVLSYLQAYEEASHYARRMVDGYMKLY 385 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHH---------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence 34456789999999999999997 346666554443 33399999999999999999999965
Q ss_pred cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 262 DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK-----DPNY---LKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 262 ~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
.|+++. .+..+.++|.+|..+|++++|+..+++|+.+ .|++ ..+...++.++..++.+++|...|+++.+
T Consensus 386 G~~Hp~-~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 386 HHNNAQ-LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp CTTCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 5889999999999999999999999999976 4555 55667899999999999999999999865
No 236
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.04 E-value=2.8e-09 Score=102.07 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCC
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISV--------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-----DPRF 71 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~ 71 (470)
......+..+..+|+|++|+.+|++++.+ +|....++.++|.+|..+|+|++|+.++++++.+ .|++
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34556677788999999999999999975 3445778999999999999999999999999986 4554
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCChHH
Q psy16214 72 ---SKGLIRQIKCNIALGDAPTARSNLKALQEL-----DPDNPAI 108 (470)
Q Consensus 72 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~ 108 (470)
...+.++|.+|..+|++++|+..+++++.+ .|+++..
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 434 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT 434 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 557889999999999999999999999863 4555544
No 237
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.03 E-value=4.5e-10 Score=82.91 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=69.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSK-LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA 316 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 316 (470)
.|..+...|++++|+..|+++++.+|++ .. ++..+|.++..+|++++|+..|+++++++|++..++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 4788888888888888888888888884 45 68888888888888888888888888888888877644
Q ss_pred hCCHHHHHHHHHHHHhcCCC
Q psy16214 317 LGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 317 ~g~~~~A~~~~~~a~~~~p~ 336 (470)
+.+.+|+..|+++...+|+
T Consensus 75 -~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHC
T ss_pred -HHHHHHHHHHHHHhccCcc
Confidence 5667777777777777665
No 238
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.00 E-value=5.4e-08 Score=87.80 Aligned_cols=155 Identities=13% Similarity=0.045 Sum_probs=111.2
Q ss_pred HhhcCCchhHH--HHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy16214 30 AISVCPNVAAY--YGNRAACYMMLGM---YTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD 104 (470)
Q Consensus 30 al~~~p~~~~~--~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 104 (470)
+....|.++.+ ++.+|..++..+. +.+|+.+|+++++++|+++.++..++.+|... . ...|.
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-----------~--~~~~~ 252 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-----------H--SQHPL 252 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------H--HHSCC
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------h--ccCCC
Confidence 33445555444 4566777766544 57888888999999998888888888887711 0 01111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q psy16214 105 NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ 184 (470)
Q Consensus 105 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 184 (470)
....... ...++.. ..++...|.++.++..++..+...|++++|+..+++++.++|+
T Consensus 253 ~~~~~~~----------------------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s 309 (372)
T 3ly7_A 253 DEKQLAA----------------------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309 (372)
T ss_dssp CHHHHHH----------------------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred chhhHHH----------------------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 1111000 0112221 1234667899999999999999899999999999999999974
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHH
Q psy16214 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK 221 (470)
Q Consensus 185 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 221 (470)
..++..+|.++...|++++|+..|.+++.++|..+.
T Consensus 310 -~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 310 -WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 778889999999999999999999999999998764
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.98 E-value=4.5e-08 Score=84.56 Aligned_cols=182 Identities=7% Similarity=-0.068 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------------------CHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214 137 AMFYLDRAMDQGVASKTYKLMKAECLAHLN---------------------RLQEAQEIANSILATDKQNPDAVFVRGLC 195 (470)
Q Consensus 137 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---------------------~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 195 (470)
.+..++-++..+|++...+...+..|..-. ++..|..+|.++.. |-.++.+
T Consensus 51 ~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~--------y~~raL~ 122 (301)
T 3u64_A 51 VLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGAR--------YALSSLE 122 (301)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHH--------HHHHHHH
Confidence 466778888999999987776666554321 13344555554433 1112221
Q ss_pred HhccCChHHHHH-----HHHHHH-hhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhcc
Q psy16214 196 LYYDDKMDLAVN-----HFQLLL-KLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG------KNQEAFDIYTEALKIDA 263 (470)
Q Consensus 196 ~~~~g~~~~A~~-----~~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~A~~~~~~al~~~p 263 (470)
. ....+.+++. -+..++ +.+|++...+.....+.. +.+-...+ ....|...++++++++|
T Consensus 123 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~s-------s~a~~~~gg~~Al~~l~~A~a~lerAleLDP 194 (301)
T 3u64_A 123 T-AYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYV-------AAFALTPLGSALPDTVHAAVMMLERACDLWP 194 (301)
T ss_dssp H-HSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHH-------HHHTTSCTTSCCHHHHHHHHHHHHHHHHHCT
T ss_pred H-hCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHH-------HHHhcCCCChHHHHhHHHHHHHHHHHHHhCC
Confidence 1 1122222221 223333 466777777665521110 11111122 35789999999999999
Q ss_pred cCccchHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCC
Q psy16214 264 RNININSKLLHNRATVLFKM-----GKYNEAIADCTLALEKDPNY-LKALSRRCKCFHA-LGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 264 ~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~ 336 (470)
+.. ...+|..+|.+|... |+.++|..+|+++++++|+. ..+++.+|..+.. .|++++|...+++++...|.
T Consensus 195 ~~~--~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 195 SYQ--EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp THH--HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred Ccc--cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 843 356899999999996 99999999999999999975 9999999999988 59999999999999999876
No 240
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.97 E-value=3.4e-08 Score=89.13 Aligned_cols=75 Identities=11% Similarity=0.069 Sum_probs=66.7
Q ss_pred hhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhH
Q psy16214 260 KIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSREN 339 (470)
Q Consensus 260 ~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 339 (470)
...|. .+.++..++.++...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|....
T Consensus 271 ~~~~~----~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 271 PELNN----LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp GGGTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred ccCCc----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 44555 5677888999999999999999999999999975 778899999999999999999999999999998654
No 241
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.94 E-value=9e-08 Score=82.68 Aligned_cols=29 Identities=10% Similarity=-0.075 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214 56 YALDDAKLAVSLDPRFSKGLIRQIKCNIA 84 (470)
Q Consensus 56 ~A~~~~~~al~~~p~~~~~~~~la~~~~~ 84 (470)
-.+..++-.+..+|++.......|..|..
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~ 78 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLYIM 78 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 34556677777788887766666666553
No 242
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.93 E-value=1.8e-08 Score=72.67 Aligned_cols=75 Identities=13% Similarity=-0.052 Sum_probs=68.6
Q ss_pred CCchhHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHH
Q psy16214 34 CPNVAAYYGNRAACYMMLGM---YTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI 108 (470)
Q Consensus 34 ~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 108 (470)
+|+++..+..+|.+++..++ .++|...++++++++|+++.+++.+|..+...|+|++|+.+++++++.+|.++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 68899999999999987766 7999999999999999999999999999999999999999999999999985543
No 243
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.92 E-value=3.7e-08 Score=77.45 Aligned_cols=112 Identities=12% Similarity=-0.015 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHH
Q psy16214 200 DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV 279 (470)
Q Consensus 200 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~ 279 (470)
+++++|+.+|+++.+...... . + |.++...+..++|+.+|+++.+.. .+.+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a--~--l------------g~~y~~g~~~~~A~~~~~~Aa~~g------~~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG--C--L------------SLVSNSQINKQKLFQYLSKACELN------SGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH--H--H------------HHHTCTTSCHHHHHHHHHHHHHTT------CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhh--h--H------------HHHHHcCCCHHHHHHHHHHHHcCC------CHHHHHHHHHH
Confidence 468899999999998764333 2 5 999999999999999999999873 45789999999
Q ss_pred HHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCC
Q psy16214 280 LFK----MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 280 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p 335 (470)
|.. .+++++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+...
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999 89999999999999987 779999999999999 9999999999999999864
No 244
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.91 E-value=4.1e-08 Score=77.18 Aligned_cols=120 Identities=9% Similarity=-0.043 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh-
Q psy16214 166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV- 244 (470)
Q Consensus 166 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~- 244 (470)
+++++|+.+|+++.+..+ +.+. +|.+|...+..++|+.+|+++.+. .++.+...+ |.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~L------------g~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFL------------GDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHH------------HHHHHHC
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHH------------HHHHHcC
Confidence 356777777777777653 3333 777777777777788888887775 455666666 777777
Q ss_pred ---cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214 245 ---AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK----MGKYNEAIADCTLALEKDPNYLKALSRRC 311 (470)
Q Consensus 245 ---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 311 (470)
.+++++|+.+|+++.+.. .+.+++++|.+|.. .+++++|+.+|+++.+. .++.+...++
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGLN------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred CCCCccHHHHHHHHHHHHcCC------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 778888888888887652 34668888888888 78888888888888876 3445544443
No 245
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.84 E-value=3.6e-08 Score=76.81 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCChHHHHH
Q psy16214 19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG---MYTYALDDAKLAVSLD-P-RFSKGLIRQIKCNIALGDAPTARS 93 (470)
Q Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 93 (470)
....+.+.|.+.+..+|.+..+.+++|.++.+.+ +.++++..++.+++.+ | ...++++.+|..++++|+|++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4567788888888888999999999999999998 6779999999999998 7 568999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHH
Q psy16214 94 NLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 94 ~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
+++++++++|++..+......+
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999887655444
No 246
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.78 E-value=6.8e-08 Score=71.67 Aligned_cols=78 Identities=19% Similarity=0.114 Sum_probs=64.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q psy16214 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVC-------PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKG 74 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 74 (470)
.+++..+.+|..++..++|..|+..|++|++.. +..+.++..+|.+++.+|+++.|+..++++++++|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 367888999999999999999999999998753 3457788888888888888888888888888888888877
Q ss_pred HHHHH
Q psy16214 75 LIRQI 79 (470)
Q Consensus 75 ~~~la 79 (470)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 76665
No 247
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.78 E-value=1.3e-07 Score=68.23 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCC
Q psy16214 149 VASKTYKLMKAECLAHLNR---LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218 (470)
Q Consensus 149 p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 218 (470)
|+++.++..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|++++|+.++++++..+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4444444444444443333 344444444444444444444444444444444444444444444444444
No 248
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=7.4e-08 Score=75.05 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhcC-C-CChHHHHHHHHHHhccCChHHHHHHH
Q psy16214 135 RTAMFYLDRAMDQGVASKTYKLMKAECLAHLN---RLQEAQEIANSILATD-K-QNPDAVFVRGLCLYYDDKMDLAVNHF 209 (470)
Q Consensus 135 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~ 209 (470)
..+...|.+.+..+|.+..+.+.+|.++.+.+ +.++++.+++.+++.+ | .+.++++++|..+++.++|++|+.++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44566777778888999999999999999998 6779999999999998 7 56899999999999999999999999
Q ss_pred HHHHhhCCChHHHHHHHHHH
Q psy16214 210 QLLLKLAPDHAKAKETYKRA 229 (470)
Q Consensus 210 ~~~l~~~p~~~~~~~~~~~~ 229 (470)
+++++.+|++..+......+
T Consensus 95 ~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHH
Confidence 99999999999887765443
No 249
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.71 E-value=9.7e-08 Score=89.94 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=85.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCC---
Q psy16214 8 KEDGNTQYKLKQYSKALKCYSEAISV--------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-----DPRF--- 71 (470)
Q Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~--- 71 (470)
...+......|+|++|+..|++++.+ +|.-..++.++|.+|..+|+|++|+.++++++.+ .|++
T Consensus 302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV 381 (433)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 34445555678999999999999975 3344678999999999999999999999999986 4444
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCChHHH
Q psy16214 72 SKGLIRQIKCNIALGDAPTARSNLKALQEL-----DPDNPAIA 109 (470)
Q Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~ 109 (470)
...+.++|.+|..+|++++|+..|++++++ .|+++.+.
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 557899999999999999999999999974 67777654
No 250
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.70 E-value=1.3e-07 Score=89.05 Aligned_cols=98 Identities=11% Similarity=0.035 Sum_probs=83.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh-----cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Q psy16214 236 KEEGNEKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK--------DPN 302 (470)
Q Consensus 236 ~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~ 302 (470)
.+........|+|++|+..+++++.+ .|+++. ...++.++|.+|..+|+|++|+.++++++.+ +|+
T Consensus 302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVY-MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 33344555678999999999999965 455655 4789999999999999999999999999976 344
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 303 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
-...+.++|.+|..+|++++|+..|++|+++.
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999874
No 251
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.66 E-value=2.6e-07 Score=87.19 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=82.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh-----cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Q psy16214 238 EGNEKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK--------DPNYL 304 (470)
Q Consensus 238 ~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 304 (470)
....+..+|++++|+..+++++.+ .|+++. ...++.++|.+|..+|+|++|+.++++++.+ +|...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~-~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIY-QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 355567889999999999999965 355554 5789999999999999999999999999976 33446
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 305 KALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 305 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
..+.++|.+|..+|++++|+..|++|+++
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999987
No 252
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.65 E-value=3.8e-07 Score=86.08 Aligned_cols=108 Identities=13% Similarity=0.040 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCC-
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISV--------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-----DPRF- 71 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~- 71 (470)
........+..+|+|++|+..+++++.+ +|....++.++|.+|..+|+|++|+.++++++.+ .|++
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 4455566778899999999999999975 2334678999999999999999999999999975 3444
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCChHHHHHHH
Q psy16214 72 --SKGLIRQIKCNIALGDAPTARSNLKALQE-----LDPDNPAIAQESK 113 (470)
Q Consensus 72 --~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~l~ 113 (470)
...+.++|.+|..+|++++|+..++++++ +.|+++.....+.
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~ 417 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL 417 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 55788999999999999999999999997 4688887654433
No 253
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.54 E-value=1.2e-06 Score=64.82 Aligned_cols=77 Identities=18% Similarity=-0.068 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHH
Q psy16214 37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLD-------PRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIA 109 (470)
Q Consensus 37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 109 (470)
++.-.+.+|..++..++|..|+..++.|++.. +..+.++..+|.++..+|+++.|+..+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35667899999999999999999999999863 34578899999999999999999999999999999998886
Q ss_pred HHHH
Q psy16214 110 QESK 113 (470)
Q Consensus 110 ~~l~ 113 (470)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6655
No 254
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.34 E-value=0.00016 Score=69.77 Aligned_cols=174 Identities=11% Similarity=0.068 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCChHHHHHHHHHHhccC---------ChHHHHHHHHHHHhh--CCChHH
Q psy16214 154 YKLMKAECLAHLNRLQEAQEIANSILATD-KQNPDAVFVRGLCLYYDD---------KMDLAVNHFQLLLKL--APDHAK 221 (470)
Q Consensus 154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~l~~--~p~~~~ 221 (470)
.+......+.+.|+.++|+.+|+++.... +-+...|..+-.++...+ ..+.|...|++.... .|+..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~- 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA- 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH-
Confidence 34556678889999999999999988764 234566666666665444 367899999887763 45543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI--DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK 299 (470)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (470)
.+..+ ...+.+.|++++|..++++.... .|+ ...|..+-..+.+.|+.++|.+.+++..+.
T Consensus 107 tyn~l------------I~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 107 TFTNG------------ARLAVAKDDPEMAFDMVKQMKAFGIQPR-----LRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHH------------HHHHHHHTCHHHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCc-----cceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34444 78888999999999999998764 343 567888999999999999999999999876
Q ss_pred C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCChhHHHHHHH
Q psy16214 300 D-PNYLKALSRRCKCFHALGQYKECVIDAEKIYKM--DNSRENHNFLEE 345 (470)
Q Consensus 300 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~l~~ 345 (470)
. .-+..+|..+-.++.+.|+.++|.+.+++..+. .|+......|..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3 234788999999999999999999999998764 566555444433
No 255
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.33 E-value=7.4e-06 Score=61.32 Aligned_cols=100 Identities=10% Similarity=0.016 Sum_probs=85.5
Q ss_pred hcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCChHH
Q psy16214 16 KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTY---ALDDAKLAVSLD-P-RFSKGLIRQIKCNIALGDAPT 90 (470)
Q Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~ 90 (470)
.......+...|.+.+..++.+..+.+++|.++.+..+... ++..++..+..+ | ..-+.++.+|..++++|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 33455677788888888788889999999999999988776 999999999877 5 567899999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 91 ARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 91 A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
|..+++.+++..|+|..+......+
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999887554444
No 256
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.29 E-value=1.2e-05 Score=60.17 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhhcC-C-CChHHHHHHHHHHhccCChHHHHHHH
Q psy16214 135 RTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQE---AQEIANSILATD-K-QNPDAVFVRGLCLYYDDKMDLAVNHF 209 (470)
Q Consensus 135 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~ 209 (470)
..+...|.+.+..++.+..+.+.+|.++....+... ++.+++.+++.+ | ..-+.++.+|..+++.|+|++|+.++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445666777777788999999999999999988776 999999999977 4 45679999999999999999999999
Q ss_pred HHHHhhCCChHHHHHHHHHH
Q psy16214 210 QLLLKLAPDHAKAKETYKRA 229 (470)
Q Consensus 210 ~~~l~~~p~~~~~~~~~~~~ 229 (470)
+.+++..|++..+......+
T Consensus 98 ~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHH
Confidence 99999999999887765333
No 257
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.14 E-value=2.6e-06 Score=55.47 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=42.0
Q ss_pred cchhhhccCCCC---CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcC
Q psy16214 356 KDYYKILGVTKN---ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415 (470)
Q Consensus 356 ~~~y~~lg~~~~---~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~ 415 (470)
.+.+.+||+... ++.++|+++||++....|||+..+ --....|++|.++|.
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS---------~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS---------FYLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHHH
Confidence 467899999998 899999999999999999999766 233556777777663
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.11 E-value=2.7e-05 Score=60.99 Aligned_cols=109 Identities=13% Similarity=0.039 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---------hHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCC
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---------AAYYGNRAACYMMLGMYTYALDDAKLAVSL------DPR 70 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~ 70 (470)
.+++....++..|.|+.|+-....++....++ ..++..+|.+++..++|..|...|++++.. .|.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46778889999999999999999987664332 348899999999999999999999998764 111
Q ss_pred -------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214 71 -------------------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115 (470)
Q Consensus 71 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 115 (470)
..+..+.+|.||..++++.+|+..++.+-. ....+.+...|+.+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL 164 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence 126889999999999999999999887532 22455666556554
No 259
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.06 E-value=0.0013 Score=63.38 Aligned_cols=166 Identities=10% Similarity=-0.075 Sum_probs=86.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHhcC-CCChHHH
Q psy16214 42 GNRAACYMMLGMYTYALDDAKLAVSL--DPRFSKGLIRQIKCNIALGD---------APTARSNLKALQELD-PDNPAIA 109 (470)
Q Consensus 42 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~l~~~-p~~~~~~ 109 (470)
..+-..+.+.|+.++|+..|++..+. .| +..+|..+-.++...+. .++|.+.|.+..... +-+...+
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 33344555556666666666555543 22 33444444444433322 455555655554421 1122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CChH
Q psy16214 110 QESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG-VASKTYKLMKAECLAHLNRLQEAQEIANSILATDK-QNPD 187 (470)
Q Consensus 110 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~ 187 (470)
..+... +...|++++|..+++++.+.. ..+...+..+...+.+.|+.++|.++++...+..- -+..
T Consensus 109 n~lI~~------------~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 109 TNGARL------------AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHHHHH------------HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHH------------HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 333333 334455555666665555442 22444555566666777777777777776665431 2455
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHh--hCCChH
Q psy16214 188 AVFVRGLCLYYDDKMDLAVNHFQLLLK--LAPDHA 220 (470)
Q Consensus 188 ~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~ 220 (470)
.+..+..++...|+.++|...+++.-+ ..|+..
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 666666677777777777777766654 345443
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.98 E-value=0.0002 Score=56.07 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=83.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcccCc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C----
Q psy16214 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNI-----NINSKLLHNRATVLFKMGKYNEAIADCTLALEKD------P---- 301 (470)
Q Consensus 237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p---- 301 (470)
+....++..+.|+.|+-....++.+..+++ .....++..+|.+++..++|..|...|+++++.. |
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 447788899999999999999887654433 3356788999999999999999999999997651 1
Q ss_pred ---------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHH
Q psy16214 302 ---------------NYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLE 344 (470)
Q Consensus 302 ---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~ 344 (470)
.+.++.+.++.||.+++++++|+..++.+-....++.+.-.|.
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~La 162 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLA 162 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHH
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHH
Confidence 1136889999999999999999999887544443455544443
No 261
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.98 E-value=0.00015 Score=55.49 Aligned_cols=53 Identities=13% Similarity=0.030 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302 (470)
Q Consensus 246 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (470)
++.++|.+.|+.++.+... .+.+|...|..-.++|+...|...+.+++.+.|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKk----FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK----FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4555555555555544211 2455555555555555555555555555555554
No 262
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.90 E-value=0.00046 Score=52.80 Aligned_cols=106 Identities=17% Similarity=0.015 Sum_probs=91.3
Q ss_pred ccHHHHHHHHHHHHhcCCH------HHHHHHHHHHhhcCCch--------hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214 2 LSAEKHKEDGNTQYKLKQY------SKALKCYSEAISVCPNV--------AAYYGNRAACYMMLGMYTYALDDAKLAVSL 67 (470)
Q Consensus 2 ~~a~~~~~~g~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 67 (470)
.+++.|..-....-..|+. ++-++.|++|+..-|.. +..|...|.. ...++.++|...|+.++++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence 3677888888888888998 89999999999877653 4556666644 5679999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHH
Q psy16214 68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI 108 (470)
Q Consensus 68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 108 (470)
...++.+|...|..-.++|+...|...+.+++...|...+.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 88899999999999999999999999999999999987765
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.76 E-value=0.0011 Score=49.74 Aligned_cols=82 Identities=11% Similarity=0.037 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHH
Q psy16214 269 NSKLLHNRATVLFKMGKY---NEAIADCTLALEKDPN-YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFL 343 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l 343 (470)
...+.++.|+++.+..+. .+++..++..+..+|. .-+.++.+|..+.++|+|++|.++.+.++++.|+ ..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 567899999999998864 5799999999998884 4889999999999999999999999999999998 4444444
Q ss_pred HHHHHHh
Q psy16214 344 EEAKRLL 350 (470)
Q Consensus 344 ~~~~~~~ 350 (470)
..++..+
T Consensus 119 ~~Ie~ki 125 (134)
T 3o48_A 119 SMVEDKI 125 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.71 E-value=0.0018 Score=49.26 Aligned_cols=80 Identities=10% Similarity=0.083 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhcCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHH
Q psy16214 149 VASKTYKLMKAECLAHLNRL---QEAQEIANSILATDKQ-NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE 224 (470)
Q Consensus 149 p~~~~~~~~~a~~~~~~~~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 224 (470)
.-+....+++|.++....+. .+++.+++.+++..|. .-+.++.+|..++++|+|++|..+.+.+|+..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56778899999999998765 4799999999998885 5679999999999999999999999999999999988876
Q ss_pred HHHH
Q psy16214 225 TYKR 228 (470)
Q Consensus 225 ~~~~ 228 (470)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6533
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.66 E-value=0.0063 Score=55.90 Aligned_cols=199 Identities=14% Similarity=0.030 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC
Q psy16214 73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ---GV 149 (470)
Q Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p 149 (470)
.+.+.+|.+|...|++++-.+.+......-+.-+.+ ++.+..+.++.. .|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka---------------------------k~~k~v~~l~~~~~~~~ 72 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA---------------------------KAAKLVRSLVDMFLDMD 72 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH---------------------------HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH---------------------------HHHHHHHHHHHHHhcCC
Confidence 456788888888888888888887765544333222 122233333333 23
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH------HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214 150 ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD------AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK 223 (470)
Q Consensus 150 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 223 (470)
+.... -++.+..+++...+.-. +-..+|.+|+..|++.+|.+.+.++++........
T Consensus 73 ~~~~~----------------~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~- 135 (394)
T 3txn_A 73 AGTGI----------------EVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK- 135 (394)
T ss_dssp CCHHH----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT-
T ss_pred CcHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc-
Confidence 33222 22223333322111111 22367888888888888888888777632221100
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---ccCccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q psy16214 224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID---ARNININSKLLHNRATVLF-KMGKYNEAIADCTLALEK 299 (470)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 299 (470)
.. .+.-+.....++...+++.++...+.++.... +.+|...+.+...-|..+. ..++|..|...|-+++..
T Consensus 136 ~~-----llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 136 NL-----LVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred hh-----HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 11 11222334888999999999999999987553 2445556788888899999 899999999999998754
Q ss_pred CCCC-----HHHHHHHHHHHHHhCCH
Q psy16214 300 DPNY-----LKALSRRCKCFHALGQY 320 (470)
Q Consensus 300 ~p~~-----~~~~~~la~~~~~~g~~ 320 (470)
.... ..+...++.|-+..++.
T Consensus 211 f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 211 FDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred ccccccHHHHHHHHHHHHHHHHcCCH
Confidence 3221 33455566666666653
No 266
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.64 E-value=0.00076 Score=50.56 Aligned_cols=82 Identities=12% Similarity=-0.036 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214 37 VAAYYGNRAACYMMLGMY---TYALDDAKLAVSLDPR-FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES 112 (470)
Q Consensus 37 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 112 (470)
++.+.++.|.++.+..+. .+++..++..+..+|. .-+.++.+|..+.++|+|++|..+.+.+++..|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 578889999999988764 5789999999988884 478899999999999999999999999999999999988776
Q ss_pred HHHHHH
Q psy16214 113 KALETM 118 (470)
Q Consensus 113 ~~~~~~ 118 (470)
..+...
T Consensus 119 ~~Ie~k 124 (134)
T 3o48_A 119 SMVEDK 124 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.64 E-value=0.0022 Score=48.73 Aligned_cols=81 Identities=11% Similarity=-0.047 Sum_probs=69.7
Q ss_pred CchhHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHH
Q psy16214 35 PNVAAYYGNRAACYMMLGMY---TYALDDAKLAVSLDPR-FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQ 110 (470)
Q Consensus 35 p~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 110 (470)
+-++.+.++.|.++....+. .+++..++..+...|. .-+.++.+|..++++|+|++|..+.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45688999999999998764 5799999999998884 5778999999999999999999999999999999998765
Q ss_pred HHHHH
Q psy16214 111 ESKAL 115 (470)
Q Consensus 111 ~l~~~ 115 (470)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.50 E-value=0.057 Score=52.99 Aligned_cols=306 Identities=8% Similarity=-0.057 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH--
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN-- 82 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-- 82 (470)
...+..+...+..|++..+..+... +.-+|-. .|.........++.. .-..+...+...|+.+..-.......
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~-l~~~pL~--~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~ 81 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPG-LKDYPLY--PYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVNE 81 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGG-GTTSTTH--HHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHh-hcCCCcH--HHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence 4567788888999998877766443 2334432 222222222222211 11144455666777765544333332
Q ss_pred -HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHhcC--CHHHHHHHHHHHHHhCCCCHHHH
Q psy16214 83 -IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGA----SKAFEAN--DYRTAMFYLDRAMDQGVASKTYK 155 (470)
Q Consensus 83 -~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~ 155 (470)
...+++..-+..+.. .|.+......+.......|....| ......+ ..+.+-.++....+...-....+
T Consensus 82 l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~ 157 (618)
T 1qsa_A 82 LARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY 157 (618)
T ss_dssp HHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHH
T ss_pred HHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHH
Confidence 234455544443332 255555544444443333322222 2222222 23344444444444444444445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH-------------hhcCCCChH-------------HHHHHHHHHhccCChHHHHHHH
Q psy16214 156 LMKAECLAHLNRLQEAQEIANSI-------------LATDKQNPD-------------AVFVRGLCLYYDDKMDLAVNHF 209 (470)
Q Consensus 156 ~~~a~~~~~~~~~~~A~~~~~~~-------------l~~~p~~~~-------------~~~~la~~~~~~g~~~~A~~~~ 209 (470)
..+....+..|+...|..+...+ +..+|.+.. .....+.......+.+.|...+
T Consensus 158 ~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~ 237 (618)
T 1qsa_A 158 LERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMI 237 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 55666666666666655544432 111222211 1122233334445667777777
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHH
Q psy16214 210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA 289 (470)
Q Consensus 210 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A 289 (470)
.......+-+....... ....+..+...+...++...+.+.....+++ . +...++...++.|++..|
T Consensus 238 ~~~~~~~~~~~~~~~~~--------~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 238 PSLAQAQQLNEDQIQEL--------RDIVAWRLMGNDVTDEQAKWRDDAIMRSQST----S-LIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HHHHHHTTCCHHHHHHH--------HHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH----H-HHHHHHHHHHHHTCHHHH
T ss_pred HhhhhccCCCHHHHHHH--------HHHHHHHHHHcCCChHHHHHHHhccccCCCh----H-HHHHHHHHHHHCCCHHHH
Confidence 66543322222211111 0001333344453567777777765443331 1 122333344567999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 290 IADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 290 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
..++...-...+......+.+|+++..+|+.++|...|+++..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999875554445688899999999999999999999999886
No 269
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.27 E-value=0.042 Score=42.83 Aligned_cols=190 Identities=15% Similarity=0.176 Sum_probs=118.0
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHH
Q psy16214 128 AFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVN 207 (470)
Q Consensus 128 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 207 (470)
.++-.+|+.++-.-.-+ .|..++....++..+...|.|..++-.+.. -+...+.+..+.|+....++..|+.
T Consensus 12 s~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~ 83 (242)
T 3kae_A 12 SIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIK 83 (242)
T ss_dssp HHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666665433322 344446777788899999999999887754 3456788888999999999999999
Q ss_pred HHHHHHh--h--C-------------CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchH
Q psy16214 208 HFQLLLK--L--A-------------PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININS 270 (470)
Q Consensus 208 ~~~~~l~--~--~-------------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 270 (470)
.++..+. . + |.+.+....+ .|.++.+.|+.++|+.++.......|--+.+..
T Consensus 84 ~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l-----------~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn 152 (242)
T 3kae_A 84 SLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL-----------LGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN 152 (242)
T ss_dssp HHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhcccccCcccccccceeeeccchHHHHHHH-----------HHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence 9999983 2 2 2333322221 389999999999999999998877665222111
Q ss_pred HHHHH-------------HHHHHHHcCCHHHHH--------HHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHH
Q psy16214 271 KLLHN-------------RATVLFKMGKYNEAI--------ADCTLALEKDPNYLK-ALSRRCKCFHALGQYKECVIDAE 328 (470)
Q Consensus 271 ~~~~~-------------la~~~~~~g~~~~A~--------~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~ 328 (470)
.++.+ .+.--.+...+.... ...++....-|.... .....+..|..+|..++...+|.
T Consensus 153 liyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~ 232 (242)
T 3kae_A 153 LLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFE 232 (242)
T ss_dssp HHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHH
Confidence 11111 000000000011111 222233333455432 23456788999999999999999
Q ss_pred HHHhcCCC
Q psy16214 329 KIYKMDNS 336 (470)
Q Consensus 329 ~a~~~~p~ 336 (470)
.+-+.+|.
T Consensus 233 ~lR~kDP~ 240 (242)
T 3kae_A 233 LVRRKDPM 240 (242)
T ss_dssp HHHHHSTT
T ss_pred HHHhcCCC
Confidence 99998884
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=97.23 E-value=0.06 Score=47.57 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------H-H---hCCCCHHHHHHHHH-HHHHhCCHHHHHHHHH
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLA---------------L-E---KDPNYLKALSRRCK-CFHALGQYKECVIDAE 328 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l-~---~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~ 328 (470)
.+.++..+|..+.+.+++.+|..+|-.. . + -.|.....+..++. .|+.+++...|...+.
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKD 212 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3455666666666666666666655211 0 1 12333555555554 5568899999888887
Q ss_pred HHHh
Q psy16214 329 KIYK 332 (470)
Q Consensus 329 ~a~~ 332 (470)
...+
T Consensus 213 ~f~~ 216 (312)
T 2wpv_A 213 IFLE 216 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 271
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.12 E-value=0.041 Score=42.88 Aligned_cols=97 Identities=12% Similarity=-0.034 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh--c---------------C
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVS--L---------------D 68 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~---------------~ 68 (470)
.-..++..++-.|.|..|+-++... +...+.+..+.||..+++|..|+..++..++ . +
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred HHhhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 3456788889999999988877543 4577788889999999999999999999983 2 3
Q ss_pred CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChH
Q psy16214 69 PRFSK-GLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107 (470)
Q Consensus 69 p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 107 (470)
|.+.+ .+..+|.++.+.|+.++|+.++......+|--+.
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 33433 4567899999999999999999998888775443
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=97.05 E-value=0.15 Score=45.25 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHH-------HH---------HhCCCCHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTL-------AL---------EKDPNYLKALSRRCK-CFHALGQYKECVIDAEKIY 331 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~-------al---------~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~ 331 (470)
.+.++..+|..+.+.+++.+|..+|-- .+ +..|.....+..++. .|+.+++...|...+....
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345566667777766666666655420 00 113445566666554 4578899998888666555
Q ss_pred h
Q psy16214 332 K 332 (470)
Q Consensus 332 ~ 332 (470)
+
T Consensus 215 ~ 215 (336)
T 3lpz_A 215 S 215 (336)
T ss_dssp H
T ss_pred H
Confidence 3
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.04 E-value=0.11 Score=47.67 Aligned_cols=177 Identities=10% Similarity=-0.059 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHH-----HHHHHHHhc-cCChHHHHHHHHHHHhhCCChHHHHHHHH
Q psy16214 154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAV-----FVRGLCLYY-DDKMDLAVNHFQLLLKLAPDHAKAKETYK 227 (470)
Q Consensus 154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-----~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 227 (470)
+...+|.+|...|++++-.+++......-+.-+.+. ..+-..+.. -+..+.-+..+..+++...+....+..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr-- 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR-- 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 456789999999999998888887655444333222 222222222 244455555555555533222222210
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC
Q psy16214 228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLALEKD---PN 302 (470)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~ 302 (470)
.......|..|+..|+|.+|.+.+.+.++.... +......++.....+|..++++.++...+.++.... +.
T Consensus 99 ----~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 99 ----QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred ----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 001123499999999999999999998864322 333456788888999999999999999999987652 12
Q ss_pred C----HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCC
Q psy16214 303 Y----LKALSRRCKCFH-ALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 303 ~----~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+ +.....-|..++ ..++|..|..+|-.+++-..+
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 2 344556688888 899999999999999765444
No 274
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0082 Score=59.98 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=86.7
Q ss_pred ccCC-hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhh--------cccCc-
Q psy16214 198 YDDK-MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV-AGKNQEAFDIYTEALKI--------DARNI- 266 (470)
Q Consensus 198 ~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~--------~p~~~- 266 (470)
..++ ++.|+..+++....+|......... . ..+... ..+--+|+..+.++++. .+.+.
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~-~----------i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTA-M----------ITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHH-H----------HHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHH-H----------HHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3455 5889999999999998765432211 0 111111 22345677777766632 11111
Q ss_pred -----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214 267 -----NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI 330 (470)
Q Consensus 267 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 330 (470)
.....++..-+..+...|+++-|+.+.++|+...|.....|+.|+.||..+|+|+.|+-.+..+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1123456667888889999999999999999999999999999999999999999999877755
No 275
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.90 E-value=0.052 Score=50.24 Aligned_cols=94 Identities=12% Similarity=0.084 Sum_probs=76.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCc-------cc-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNI-------NI-----------NSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (470)
|......++.+.|...+.+|+.+..... .. ...+...++.++...|++.+|+..+..++..+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5555667899999999999987642211 00 12345567788899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 301 PNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 301 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
|-+-.++..+-.++...|+..+|+..|+++.+
T Consensus 202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.89 E-value=0.025 Score=48.27 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=42.2
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK 223 (470)
Q Consensus 162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 223 (470)
+++.|+.++|+..+...++.+|.+......+..++.-.|+++.|.+.++.+.+++|+.....
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 45566667777777777777777777777777777777777777777777777777655443
No 277
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.80 E-value=0.084 Score=54.19 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=25.3
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q psy16214 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL 212 (470)
Q Consensus 162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 212 (470)
....|++++|.++.+. .++...|..+|..+...++++.|+.+|.++
T Consensus 662 ~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555555432 234556666666666666666666666554
No 278
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.65 E-value=0.031 Score=51.82 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----------------------hHHHHHHHHHHHHcCChHHHHHHHHH
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----------------------AAYYGNRAACYMMLGMYTYALDDAKL 63 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~g~~~~A~~~~~~ 63 (470)
.+...|......|+.+.|+..+.+|+.+.... ..+...++.++...|++.+|+..+..
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555666677899999999999999874211 23344567778899999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE 100 (470)
Q Consensus 64 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 100 (470)
++..+|-+..++..+..++...|+..+|+..|+++..
T Consensus 197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.63 E-value=0.052 Score=46.30 Aligned_cols=58 Identities=21% Similarity=0.215 Sum_probs=29.1
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q psy16214 14 QYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF 71 (470)
Q Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (470)
+++.|+.++|++.....|+.+|.++.....+...+.-.|+++.|...++.+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3444455555555555555555555555555555555555555555555555555443
No 280
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.45 Score=44.83 Aligned_cols=174 Identities=14% Similarity=0.012 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--C----hHHHHHHHHHHhccCChHHHHHHHHHHHh---hCCChHHHH
Q psy16214 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQ--N----PDAVFVRGLCLYYDDKMDLAVNHFQLLLK---LAPDHAKAK 223 (470)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~ 223 (470)
.+...++.++...|++.+|...+..+....-. + .+.+.....++...+++.+|...+.++.. ..+..+...
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 44567899999999999999999987643211 1 46788888999999999999999998742 233333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16214 224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301 (470)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (470)
..+ ....|..+...++|.+|..+|..++..... ++.....++.....+..-.+....--....+.. .++
T Consensus 218 ~~~--------~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~-~~~ 288 (445)
T 4b4t_P 218 LEY--------YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQ-NDN 288 (445)
T ss_dssp HHH--------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHH-HHS
T ss_pred HHH--------HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHh-hcc
Confidence 211 112288899999999999999998865321 211111122222222221211111111111111 122
Q ss_pred --CCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhcCC
Q psy16214 302 --NYLKALSRRCKCFHA--LGQYKECVIDAEKIYKMDN 335 (470)
Q Consensus 302 --~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~p 335 (470)
.....+..+..++.. +.+++.....|...+.-+|
T Consensus 289 ~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 289 NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 234566677777764 4678888887777666554
No 281
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.1 Score=52.20 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=86.4
Q ss_pred cCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--Hc-CChHHHHHHHHHHHh--------cCCCChHHHHHHHHHHHH
Q psy16214 51 LGM-YTYALDDAKLAVSLDPRFSKGLIRQIKCNI--AL-GDAPTARSNLKALQE--------LDPDNPAIAQESKALETM 118 (470)
Q Consensus 51 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~~l~--------~~p~~~~~~~~l~~~~~~ 118 (470)
.++ ++.|+..+++....+|.... ++..+.+.. .. .+--+|+..+.+.++ +.+.+.......-.....
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 344 58899999999999986543 333333222 12 233457777766653 233443322221111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214 119 AKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSI 178 (470)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 178 (470)
...+|.-++.+++++-|+.+.++++...|.....|..++.+|..+|+|+.|+-.++.+
T Consensus 340 --L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 --LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred --HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2334556788999999999999999999999999999999999999999999998876
No 282
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.34 E-value=0.63 Score=47.60 Aligned_cols=165 Identities=13% Similarity=-0.008 Sum_probs=84.2
Q ss_pred HHHHhcCCHHHHHH-HHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q psy16214 12 NTQYKLKQYSKALK-CYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPT 90 (470)
Q Consensus 12 ~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 90 (470)
......+++++|.. ++. .-|+ ...+...+..+...|.+++|+...+ ++... .......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456788888876 431 1110 1122455566666777777765442 22222 233456777777
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy16214 91 ARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEA-NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ 169 (470)
Q Consensus 91 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~ 169 (470)
|.+..+. .+++..|..++......++++.|..++.. ++++.+..++.. ..+...+..++......|++.
T Consensus 671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~-----~~~~~~~~~~~~~a~~~~~~~ 740 (814)
T 3mkq_A 671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSS-----FNNKEGLVTLAKDAETTGKFN 740 (814)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHH-----cCCHHHHHHHHHHHHHcCchH
Confidence 7776542 24566676666665555555554444332 444444333322 334445555666666666666
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHH
Q psy16214 170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQ 210 (470)
Q Consensus 170 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 210 (470)
.|...+.+.= + .-....+|...+++++|+..-+
T Consensus 741 ~A~~~~~~~g-----~---~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 741 LAFNAYWIAG-----D---IQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HHHHHHHHHT-----C---HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcC-----C---HHHHHHHHHHcCChHHHHHHHH
Confidence 6655544321 0 1112233455555555555443
No 283
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.83 E-value=1.6 Score=42.89 Aligned_cols=287 Identities=10% Similarity=-0.008 Sum_probs=168.6
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHH---HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy16214 26 CYSEAISVCPNVAAYYGNRAACYM---MLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELD 102 (470)
Q Consensus 26 ~~~~al~~~p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 102 (470)
-+...+..+|+.+..-..+..... ..+++..-+..+.. .|.+.......+.+....|+..+|......+....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 455556667777665544444433 34566655554433 37777777777788888888877877777776655
Q ss_pred CCChHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHH-------------HHHhCCCCHHH---------
Q psy16214 103 PDNPAIAQESKALET------MAKNFEGASKAFEANDYRTAMFYLDR-------------AMDQGVASKTY--------- 154 (470)
Q Consensus 103 p~~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~-------------~l~~~p~~~~~--------- 154 (470)
...+.....+..... ...........+..++...|...... .+..+|.....
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~ 212 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATD 212 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCH
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCCh
Confidence 444443333333222 12234444445555555544433322 11223332211
Q ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH----HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214 155 ----KLMKAECLAHLNRLQEAQEIANSILATDKQNPD----AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226 (470)
Q Consensus 155 ----~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 226 (470)
....+.......+.+.|...+.......+-+.. .+..++.-....+...++...+.+.....+++. .....
T Consensus 213 ~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~ 291 (618)
T 1qsa_A 213 FTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERR 291 (618)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHH
Confidence 122333344455788898888877654433332 222333333444546677777777665444433 33333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q psy16214 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD------ 300 (470)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 300 (470)
+...+..++++.|...+...-..... .+...+.+|.++..+|+.++|...|.++....
T Consensus 292 ------------~r~Alr~~d~~~a~~~~~~l~~~~~~----~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~l 355 (618)
T 1qsa_A 292 ------------VRMALGTGDRRGLNTWLARLPMEAKE----KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMV 355 (618)
T ss_dssp ------------HHHHHHHTCHHHHHHHHHHSCTTGGG----SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHH
T ss_pred ------------HHHHHHCCCHHHHHHHHHHccccccc----cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHH
Confidence 33455679999999999775442222 46678899999999999999999998876520
Q ss_pred -----------------CCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 301 -----------------PNY-----LKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 301 -----------------p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
+.. .......+..+..+|....|...+..++..
T Consensus 356 Aa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 356 AAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 000 112356677888899999999888887764
No 284
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.44 E-value=1.7 Score=40.77 Aligned_cols=199 Identities=19% Similarity=0.123 Sum_probs=118.2
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHH---h-ccC
Q psy16214 131 ANDYRTAMFYLDRAMDQ------GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCL---Y-YDD 200 (470)
Q Consensus 131 ~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~---~-~~g 200 (470)
.+++..|++.+..+.+. .+....+...+..++...++|+...+.+.-+.+.......+...+.... . ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 35667777766444432 2345677888889999999999887777655544333322222211111 1 111
Q ss_pred ChHHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--ccCccchHHHHHHH
Q psy16214 201 KMDLAVNHFQLLLKLAPD--HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID--ARNININSKLLHNR 276 (470)
Q Consensus 201 ~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~l 276 (470)
..+.. .....+..... ....+.-. ....-....+.++...|++.+|...+.....-. ..+......++...
T Consensus 109 ~~d~~--~~~~~i~~l~~vte~kiflE~---erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 109 SLDLN--TRISVIETIRVVTENKIFVEV---ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp TTHHH--HHHHHHHCCSSSSSCCCCCCH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred chhHH--HHHHHHHHHHHHhccchHHHH---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 11111 11111111000 00000000 001111223899999999999999999876322 12222245778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214 277 ATVLFKMGKYNEAIADCTLALE---KDPNY----LKALSRRCKCFHALGQYKECVIDAEKIYKMD 334 (470)
Q Consensus 277 a~~~~~~g~~~~A~~~~~~al~---~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 334 (470)
..++...+++..|...+.++.. ..+.. ...+...|.++...++|.+|..+|..++...
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999998743 23333 3456778999999999999999999998753
No 285
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.13 Score=41.08 Aligned_cols=45 Identities=29% Similarity=0.215 Sum_probs=32.0
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214 49 MMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL 98 (470)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 98 (470)
+..|+++.|.+..+.. ++...|..+|...+..|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4567777777776554 45667777777777777777777777765
No 286
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.8 Score=36.49 Aligned_cols=102 Identities=12% Similarity=-0.031 Sum_probs=62.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239 (470)
Q Consensus 160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 239 (470)
.+....|+++.|.+..+.+ ++...|..+|......|+++-|..+|+++-.. ... .
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----~~L----------------~ 67 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF----DKL----------------S 67 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----HHH----------------H
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----HHH----------------H
Confidence 3456788888888887765 56778888888888888888888888765321 111 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTL 295 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (470)
.+|.-.|+.+.-...-+.+.... + +...-.+++.+|+++++++.|.+
T Consensus 68 ~Ly~~tg~~e~L~kla~iA~~~g-~--------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 68 FLYLVTGDVNKLSKMQNIAQTRE-D--------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTT-C--------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHCc-c--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 23344455544333333332221 1 33335556677888888777654
No 287
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.01 E-value=3.4 Score=44.14 Aligned_cols=141 Identities=11% Similarity=0.016 Sum_probs=93.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Q psy16214 41 YGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELD-PDNPAIAQESKALETMA 119 (470)
Q Consensus 41 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~ 119 (470)
...+...+...+.++-|.+ .+..-|.++...+.+|.++...|++++|..+|+++-.-- ..+.... .+.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~-~~~------ 883 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA-VLR------ 883 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS-SHH------
T ss_pred HHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh-hhc------
Confidence 3345666777888876654 334567777888999999999999999999999875422 2111100 000
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH-----HHHH
Q psy16214 120 KNFEGASKAFEANDYRTAMFYLDRAMDQ---GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD-----AVFV 191 (470)
Q Consensus 120 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~ 191 (470)
.+...... ....+.++.....++...+.++.+++....++...+.+.. .|..
T Consensus 884 --------------------~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~ 943 (1139)
T 4fhn_B 884 --------------------EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHE 943 (1139)
T ss_dssp --------------------HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred --------------------ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHH
Confidence 00111111 2223456677778888889999999999988876654322 5666
Q ss_pred HHHHHhccCChHHHHHHHHHH
Q psy16214 192 RGLCLYYDDKMDLAVNHFQLL 212 (470)
Q Consensus 192 la~~~~~~g~~~~A~~~~~~~ 212 (470)
+=..+...|+|++|...+...
T Consensus 944 iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 944 TLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHhC
Confidence 677788889999998877544
No 288
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.00 E-value=0.17 Score=48.15 Aligned_cols=77 Identities=12% Similarity=-0.095 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214 40 YYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116 (470)
Q Consensus 40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 116 (470)
.+..+|........+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|.+++......+.+...+..+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666665555555555555553
No 289
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.87 E-value=2 Score=38.22 Aligned_cols=140 Identities=11% Similarity=-0.001 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHhcCCCCh
Q psy16214 40 YYGNRAACYMMLGMYTYALDDAKLAVSL-----DPRFSKGLIRQIKCNIALGDA--------PTARSNLKALQELDPDNP 106 (470)
Q Consensus 40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~--------~~A~~~~~~~l~~~p~~~ 106 (470)
+++.-+..+++.|++..|.+...-.++. -|-+....-++..++.....- .+|+.+-.+.-...-.++
T Consensus 57 LL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp 136 (336)
T 3lpz_A 57 ILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDP 136 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCH
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCH
Confidence 3444455555556655555544333321 122233444444444443321 223333222111233567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH---HHHHHHH-HhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHh
Q psy16214 107 AIAQESKALETMAKNFEGASKAFEANDYRTAM---FYLDRAM-DQGVASKTYKLMKAE-CLAHLNRLQEAQEIANSIL 179 (470)
Q Consensus 107 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~---~~~~~~l-~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~l 179 (470)
..+..++..+...+.+..|..++-.+.-+.+. ..+-... +..|.....+..++. .|+..++...|...+...+
T Consensus 137 ~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 137 ELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88888888887777788888877766643321 2222222 224555566655554 4677899998887665544
No 290
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.3 Score=45.84 Aligned_cols=107 Identities=9% Similarity=-0.061 Sum_probs=73.6
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-
Q psy16214 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA- 263 (470)
Q Consensus 185 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p- 263 (470)
...++..+|..+...|+++.|.+.|.++.............+ .....+++..++|..+...+.++.....
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~---------l~~irl~l~~~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVM---------LTIARLGFFYNDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHH---------HHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHH---------HHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence 345778888888888888888888888877544432222111 2226677778888888888888865432
Q ss_pred -cCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214 264 -RNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300 (470)
Q Consensus 264 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (470)
.++.....+....|.++...++|.+|...|-.++...
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 2333344556667778888889999988888877654
No 291
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.41 Score=44.90 Aligned_cols=97 Identities=10% Similarity=-0.091 Sum_probs=78.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD--PNY----LKALSRRCK 312 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~la~ 312 (470)
|..+...|++++|.++|.++......... ...++.....++...+++..+...+.++..+. ..+ .......|.
T Consensus 138 a~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl 216 (429)
T 4b4t_R 138 GEYYAQIGDKDNAEKTLGKSLSKAISTGA-KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGI 216 (429)
T ss_dssp HHHHHHHCCCTTHHHHHHHHHHHHTCCCS-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999998876654433 46788889999999999999999999997652 122 234455677
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 313 CFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 313 ~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
++...++|.+|...|-.++.-...
T Consensus 217 ~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 217 HCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp GGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHhChHHHHHHHHHHHhccCCc
Confidence 888899999999999988876554
No 292
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.16 E-value=0.67 Score=47.77 Aligned_cols=91 Identities=8% Similarity=-0.029 Sum_probs=76.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh-----cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD-PNYLKALSRRCK 312 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 312 (470)
-..+.+.|+.++|..++.+..+. .|+ ...|..+-..+.+.|+.++|.+.|++..+.. .-+..+|..+-.
T Consensus 134 IdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-----LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 78899999999999999875432 343 5679999999999999999999999998753 335788888999
Q ss_pred HHHHhCC-HHHHHHHHHHHHhcC
Q psy16214 313 CFHALGQ-YKECVIDAEKIYKMD 334 (470)
Q Consensus 313 ~~~~~g~-~~~A~~~~~~a~~~~ 334 (470)
++.+.|+ .++|.+.+++..+..
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcHHHHHHHHHHHHHcC
Confidence 9999998 578899999988754
No 293
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.93 E-value=0.42 Score=45.43 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214 74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS 126 (470)
Q Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~ 126 (470)
.+..+|.+......+..|..+|.+|..+.|++...++.+|.+....++.-.+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 45566666666666667777777777777777666666666666544444444
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.48 Score=44.82 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=57.5
Q ss_pred HHHHcCCHHHHHHHHHHHhh-----------cCCCChHHHHHHHHHHhccCChHHHH----------HHHHHHHh-----
Q psy16214 161 CLAHLNRLQEAQEIANSILA-----------TDKQNPDAVFVRGLCLYYDDKMDLAV----------NHFQLLLK----- 214 (470)
Q Consensus 161 ~~~~~~~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~~l~----- 214 (470)
.++..+++++|..+...++. +++-.+.+|+..+.++...|+..... ..+-.+++
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34567888888888776551 13334667888888887777765432 22323332
Q ss_pred hCCChH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC---ccchHHHHHHHHHHHHHcCCHHHHH
Q psy16214 215 LAPDHA-KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN---ININSKLLHNRATVLFKMGKYNEAI 290 (470)
Q Consensus 215 ~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~la~~~~~~g~~~~A~ 290 (470)
.+++.. ..+..+ -..|...+.+++|..+..++. .|.+ .......++.+|.++...++|.+|.
T Consensus 225 ~D~~~qa~l~nll------------LRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~ 290 (523)
T 4b4t_S 225 HDNETKAMLINLI------------LRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTAN 290 (523)
T ss_dssp SSSCHHHHHHHHH------------HHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCcchhHHHHHHH------------HHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 333322 223333 778899999999999999985 3322 1113567788999999999999999
Q ss_pred HHHHHHHHhCCCC
Q psy16214 291 ADCTLALEKDPNY 303 (470)
Q Consensus 291 ~~~~~al~~~p~~ 303 (470)
+++..|+...|.+
T Consensus 291 ~~L~~A~rkap~~ 303 (523)
T 4b4t_S 291 EYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHTSSCSCS
T ss_pred HHHHHHHHhCCcc
Confidence 9999999987754
No 295
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.15 E-value=4.3e-06 Score=76.95 Aligned_cols=222 Identities=14% Similarity=0.069 Sum_probs=121.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.++.|..+|.+++..+...+||+.|-++ +++..+.....+..+.|.|++=+.++.-+-+. -..+.+-..|..+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHH
Confidence 3456777777777777777777777554 23334445555556677777777776655443 23344445566777
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL 162 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 162 (470)
.++++..+-.+.+. .|+...+ -.-+..++..|.|+.|.-+|..+ ++ +..+|.++
T Consensus 127 Ak~~rL~elEefl~-----~~N~A~i-------------q~VGDrcf~e~lYeAAKilys~i----sN----~akLAstL 180 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-----GPNNAHI-------------QQVGDRCYDEKMYDAAKLLYNNV----SN----FGRLASTL 180 (624)
T ss_dssp HTSCSSSTTTSTTS-----CCSSSCT-------------HHHHHHHHHSCCSTTSSTTGGGS----CC----CTTTSSSS
T ss_pred HhhCcHHHHHHHHc-----CCCcccH-------------HHHHHHHHHccCHHHHHHHHHhC----cc----HHHHHHHH
Confidence 77777554322221 3444443 22344567777776665544322 11 23366777
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214 163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK 242 (470)
Q Consensus 163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (470)
..+|+|..|++..+++ +++.+|-....++...+++.-|..+--.++- .|+...-. ...|
T Consensus 181 V~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL~el---------------v~~Y 239 (624)
T 3lvg_A 181 VHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELEEL---------------INYY 239 (624)
T ss_dssp SSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCSGG---------------GSSS
T ss_pred HHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHHHHH---------------HHHH
Confidence 7777777777665543 4455666666666666666655554433332 22221111 3334
Q ss_pred HhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHH
Q psy16214 243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF 281 (470)
Q Consensus 243 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~ 281 (470)
...|-+++-+.+++.++.+..- ....+..||.+|.
T Consensus 240 E~~G~f~ELIsLlEaglglErA----HmGmFTELaILYs 274 (624)
T 3lvg_A 240 QDRGYFEELITMLEAALGLERA----HMGMFTELAILYS 274 (624)
T ss_dssp STTCCCTTSTTTHHHHTTSTTC----CHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHhCCCch----hHHHHHHHHHHHH
Confidence 4555566666666655544433 2233445555444
No 296
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.81 E-value=1.5 Score=45.19 Aligned_cols=94 Identities=9% Similarity=-0.054 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHH
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAIS-----VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--DPRFSKGLIRQ 78 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (470)
.+..+-..+++.|+.++|..+|....+ ..| +...|..+-..|.+.|+.++|.+.|++..+. .| +...|..+
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 477778899999999999999977543 234 5788999999999999999999999998875 45 67788888
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHhc
Q psy16214 79 IKCNIALGDA-PTARSNLKALQEL 101 (470)
Q Consensus 79 a~~~~~~g~~-~~A~~~~~~~l~~ 101 (470)
-.++.+.|+. ++|.++++...+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 8899999985 7888999888764
No 297
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.77 E-value=7.7 Score=41.44 Aligned_cols=171 Identities=11% Similarity=0.041 Sum_probs=101.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-ccC----
Q psy16214 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID-ARN---- 265 (470)
Q Consensus 191 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~---- 265 (470)
.+...+...+.++-+.. .+...|.++.....+ |.+++..|++++|..+|.++-.-- ..+
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~------------g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLK------------ALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHH------------HHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHH------------HHHHHhcCCHHHHHHHHHHHhhhhcccchhhh
Confidence 34444555566655443 334556665555555 899999999999999998863110 000
Q ss_pred --------------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHhCCHHHHHHH
Q psy16214 266 --------------ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-L----KALSRRCKCFHALGQYKECVID 326 (470)
Q Consensus 266 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~la~~~~~~g~~~~A~~~ 326 (470)
....+..|..+..++.+.+.++.+++....|++..+.+ . ..|.++-..+..+|+|++|...
T Consensus 881 ~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 881 VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp SHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred hhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 01123557778888889999999999999999875433 2 2577788889999999999877
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHH
Q psy16214 327 AEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRAL 382 (470)
Q Consensus 327 ~~~a~~~~p~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~ 382 (470)
+...-...-..+....|-... .+....-.++..+...-.+++......+|+
T Consensus 961 L~~~pd~~~r~~cLr~LV~~l-----ce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr 1011 (1139)
T 4fhn_B 961 LMVLSTTPLKKSCLLDFVNQL-----TKQGKINQLLNYSMPTLRQDVDNLLERKAF 1011 (1139)
T ss_dssp HHHHHHSSSCHHHHHHHHHHH-----HHHCCHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHH-----HhCCChhhhhCCCCccHHHHHHHHHHHHHH
Confidence 755432222222222221111 122233344455554455555555444443
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.57 E-value=0.37 Score=45.58 Aligned_cols=67 Identities=9% Similarity=-0.066 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 268 INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-------LKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
..+.++..+-..|...+.++.|..+..++. .|.. ...++.+|+++...++|.+|.+++..|+...|.
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 367889999999999999999999999984 4432 556778899999999999999999999998875
No 299
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.90 E-value=14 Score=32.60 Aligned_cols=170 Identities=9% Similarity=0.003 Sum_probs=97.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcC------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHHHHHH
Q psy16214 10 DGNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-----DPRFSKGLIRQ 78 (470)
Q Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l 78 (470)
+-...+..|+|=+|-+.|+...... .+-.+.++.-+..+...|++..|.....-.++. .|-+....-++
T Consensus 19 rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 19 RFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3344556677777777666555331 122445566667777778877777665444432 23344555556
Q ss_pred HHHHHHcCChH-HHHHHHHHHHh-------cCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHh
Q psy16214 79 IKCNIALGDAP-TARSNLKALQE-------LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMF---YLDRAMDQ 147 (470)
Q Consensus 79 a~~~~~~g~~~-~A~~~~~~~l~-------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~---~~~~~l~~ 147 (470)
..++.....-+ .=...++++++ ..-.++..+..++..+...+++..|..++-.++.+.+.. .+-.....
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 66655433211 11223333332 123578889999999888888888888888777433333 22233332
Q ss_pred ----CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHh
Q psy16214 148 ----GVASKTYKLMKAE-CLAHLNRLQEAQEIANSIL 179 (470)
Q Consensus 148 ----~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~l 179 (470)
.|.....+..++. .|+..++...|...+....
T Consensus 179 ~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2333444444443 4567888888888877654
No 300
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.68 E-value=31 Score=35.51 Aligned_cols=274 Identities=10% Similarity=0.001 Sum_probs=141.4
Q ss_pred HHhcCCHHHHHHHHHHHhhcC-Cc----hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---C---CH----HHHHHH
Q psy16214 14 QYKLKQYSKALKCYSEAISVC-PN----VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP---R---FS----KGLIRQ 78 (470)
Q Consensus 14 ~~~~g~~~~A~~~~~~al~~~-p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~---~~----~~~~~l 78 (470)
....|+.++++..+.+.+... .+ ...+++.+|.++...+ .+++..+...+..+. . .. .+-..+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345677788888888777522 11 1445666666655554 478888888776432 0 11 345567
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214 79 IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK 158 (470)
Q Consensus 79 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 158 (470)
|.++...++ +++.+.+..++..+. .... ...-+..+..++..++-+....++..+.+...+...-...+
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~--~~~~--------~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aal 530 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDS--ATSG--------EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAV 530 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCC--HHHH--------HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCC--HHHH--------HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 777766655 567777777776332 1111 11123444556677777666666666655433322222334
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChH----HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Q psy16214 159 AECLAHLNRLQEAQEIANSILATDKQNPD----AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA 234 (470)
Q Consensus 159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 234 (470)
|..+...|+.+.+-.+.+.+... .++. +-+.+|..|...|+...-...+..+.. ++++. +... .
T Consensus 531 gLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-d~~d~-VRra--------A 598 (963)
T 4ady_A 531 GLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-DSNDD-VRRA--------A 598 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-CSCHH-HHHH--------H
T ss_pred HHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-CCcHH-HHHH--------H
Confidence 44455677877666666655442 2333 334567778889996544446666554 44332 1110 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q psy16214 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY---LKALSRRC 311 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 311 (470)
-.|......|+.+.+...+..... ..++.....+-..+|.+....++ .+++..+..... +++. ..+...+|
T Consensus 599 --ViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~-D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 599 --VIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK-DPVDFVRQAAMIALS 672 (963)
T ss_dssp --HHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT-CSSHHHHHHHHHHHH
T ss_pred --HHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc-CCCHHHHHHHHHHHH
Confidence 013334444554333333332222 22332233333344444433343 677777777653 4443 23445555
Q ss_pred HHHHHhC
Q psy16214 312 KCFHALG 318 (470)
Q Consensus 312 ~~~~~~g 318 (470)
.+.....
T Consensus 673 ~Ig~gtn 679 (963)
T 4ady_A 673 MILIQQT 679 (963)
T ss_dssp HHSTTCC
T ss_pred HHhcCCc
Confidence 5554433
No 301
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=80.58 E-value=16 Score=27.53 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhhcccCccchHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16214 246 GKNQEAFDIYTEALKIDARNININSKLLHNRA-TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV 324 (470)
Q Consensus 246 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 324 (470)
++....+.+|-+.-. ... +..+| ..+...|+-++-.+.+...+...+-++..++.+|.+|.+.|+..+|.
T Consensus 75 ~NlKrVi~C~~~~n~-~se--------~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 75 QNLKSVVECGVINNT-LNE--------HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp SCTHHHHHHHHHTTC-CCH--------HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcHHHHHHHHHHhcc-hHH--------HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHH
Confidence 555666666654211 111 33444 34567777777777777766667777999999999999999999999
Q ss_pred HHHHHHHhcC
Q psy16214 325 IDAEKIYKMD 334 (470)
Q Consensus 325 ~~~~~a~~~~ 334 (470)
+.+.+|.+..
T Consensus 146 eLl~~AC~kG 155 (172)
T 1wy6_A 146 TLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 302
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=79.97 E-value=4.5 Score=26.62 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCch
Q psy16214 8 KEDGNTQYKLKQYSKALKCYSEAISVCPNV 37 (470)
Q Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 37 (470)
..+|..+...|++++|+.+|-+|+..+|+-
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 345666666666666666666666666653
No 303
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=79.11 E-value=42 Score=33.11 Aligned_cols=32 Identities=13% Similarity=-0.070 Sum_probs=22.7
Q ss_pred HHHHHHHHHH--HHhCCHHHHHHHHHHHHhcCCCh
Q psy16214 305 KALSRRCKCF--HALGQYKECVIDAEKIYKMDNSR 337 (470)
Q Consensus 305 ~~~~~la~~~--~~~g~~~~A~~~~~~a~~~~p~~ 337 (470)
..+..+..++ ...|+++.|+..+++ +.+-|..
T Consensus 537 ~lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 537 MLLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 3445555555 788999999999998 5677754
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.11 E-value=52 Score=34.26 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=42.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK 214 (470)
Q Consensus 158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 214 (470)
+...+...+.++-|. ..+..-|.++-.-+.+|.++...|++++|..+|+++-.
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 556667778777543 45677788888889999999999999999999998753
No 305
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=76.57 E-value=8.6 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 308 SRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 308 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
..+|..+...|++++|+..|-+|+.+.|.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34566666666666777766667776665
No 306
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=72.57 E-value=6.4 Score=26.64 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISV 33 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 33 (470)
+..+...|..+++.++|.+|...|+++...
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 445555666666666666666666666543
No 307
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=72.25 E-value=16 Score=24.75 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSEAIS 32 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 32 (470)
+-.+...|...-..|+|++|+.+|..+++
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33455556666666666666666666553
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.99 E-value=1.1e+02 Score=31.87 Aligned_cols=52 Identities=8% Similarity=-0.067 Sum_probs=38.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214 192 RGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL 259 (470)
Q Consensus 192 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 259 (470)
+...+...+.++-| ...+...|.++.....+ |.+++..|++++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~------------gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLK------------ALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHH------------HHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHh
Confidence 44455566666544 34556777776665555 999999999999999999875
No 309
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=69.21 E-value=20 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAIS 32 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 32 (470)
.+...|...-..|+|++|+.+|..+++
T Consensus 13 ~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 13 KYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555556666666666555543
No 310
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=69.20 E-value=13 Score=33.04 Aligned_cols=45 Identities=9% Similarity=-0.055 Sum_probs=34.1
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 289 AIADCTLALEK-----DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 289 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
++..|.+++.. ...+..-|..+|-.+.+.+++.+|+..+-.+-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 55555555543 3445677888899999999999999999887654
No 311
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=67.04 E-value=7.8 Score=26.99 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q psy16214 9 EDGNTQYKLKQYSKALKCYSEAISVCPN 36 (470)
Q Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~ 36 (470)
.+|..+...|+++.|+.+|-+|+..+|+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4566666666666666666666666554
No 312
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=65.57 E-value=8.3 Score=26.38 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEAIS 32 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 32 (470)
..+...|...-..|+|++|+.+|..+++
T Consensus 17 ~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 17 ATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555566666666666655543
No 313
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=63.49 E-value=13 Score=25.53 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214 270 SKLLHNRATVLFKMGKYNEAIADCTL 295 (470)
Q Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (470)
+..+..++..+...|+|++||++.++
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHH
Confidence 34455556666666666666655543
No 314
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=63.47 E-value=12 Score=25.65 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEA 30 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~a 30 (470)
+-.++..+...|+|++||++..++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344555555555665555555444
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=62.40 E-value=53 Score=25.51 Aligned_cols=28 Identities=11% Similarity=0.294 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAISVC 34 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~ 34 (470)
-+..|..+|..|+|=+|=+.++.+....
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~ 62 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNY 62 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 3444555555555555555555555443
No 316
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=61.67 E-value=16 Score=25.41 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 309 RRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 309 ~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.+|..+...|+++.|+.+|-+|+.+.|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3566666666666666666666666665
No 317
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=61.40 E-value=8.6 Score=25.68 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAIS 32 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~ 32 (470)
...+|..+...|+|+.|+.+|+.++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45566777777777777777776664
No 318
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=60.88 E-value=19 Score=29.38 Aligned_cols=34 Identities=15% Similarity=-0.041 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q psy16214 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF 71 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (470)
....+.+|..++..++|.+|.+.+..|+...|..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 4455566666666666666666666666655543
No 319
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.88 E-value=1.6e+02 Score=30.38 Aligned_cols=193 Identities=11% Similarity=0.014 Sum_probs=95.2
Q ss_pred hcCCHHHHHHHHHHHHHhC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC---C---Ch----HHHHHHHH
Q psy16214 130 EANDYRTAMFYLDRAMDQG-VASK----TYKLMKAECLAHLNRLQEAQEIANSILATDK---Q---NP----DAVFVRGL 194 (470)
Q Consensus 130 ~~~~~~~A~~~~~~~l~~~-p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p---~---~~----~~~~~la~ 194 (470)
..++.++++..+.+.+... ..+. .+.+.+|.++...+ .+++..+...+.... . +. .+-..+|.
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3456666666666555421 1222 23444444444443 467777777665432 0 11 24456666
Q ss_pred HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHH
Q psy16214 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLH 274 (470)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 274 (470)
++.-.++ +++...+..++..+... ... ......|.++.-.|+-+-...++..+.....+ ...-..
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~~~--~~~--------~AalALGli~vGTgn~~ai~~LL~~~~e~~~e----~vrR~a 528 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDSAT--SGE--------AAALGMGLCMLGTGKPEAIHDMFTYSQETQHG----NITRGL 528 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCCHH--HHH--------HHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH----HHHHHH
T ss_pred HhcCCCC-HHHHHHHHHHHhcCCHH--HHH--------HHHHHHhhhhcccCCHHHHHHHHHHHhccCcH----HHHHHH
Confidence 6665554 45666666666533211 110 11122377777777766555555555443222 112223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHH
Q psy16214 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLK----ALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNF 342 (470)
Q Consensus 275 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 342 (470)
.+|..+...|+.+.+-...+.... .+ ++. +-+.+|.+|...|+...-...+..+. -+++..++..
T Consensus 529 algLGll~~g~~e~~~~li~~L~~-~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~-~d~~d~VRra 597 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLA-SD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-SDSNDDVRRA 597 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHH-CS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HCSCHHHHHH
T ss_pred HHHHHhhhCCChHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc-cCCcHHHHHH
Confidence 344445566776655555554333 22 222 23445667778888543333555444 3555555443
No 320
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=59.39 E-value=12 Score=25.42 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAI 31 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al 31 (470)
+...|...-..|+|++|+.+|..++
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 321
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=59.30 E-value=92 Score=27.31 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcccCc----cchHHH--HHHHHHHHH-----Hc--CC-----HHHHHHHHHHHH
Q psy16214 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNI----NINSKL--LHNRATVLF-----KM--GK-----YNEAIADCTLAL 297 (470)
Q Consensus 236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~--~~~la~~~~-----~~--g~-----~~~A~~~~~~al 297 (470)
...|.-++..|++++|+..|+.++..-|-.. .-...+ +..++.-|. ++ .. .++-...++-+.
T Consensus 106 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAA 185 (320)
T 3mkr_B 106 LQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAA 185 (320)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHH
Confidence 3448999999999999999999987654211 001111 111111111 11 11 122122222221
Q ss_pred -----HhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHH
Q psy16214 298 -----EKDPNYLK-ALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNF 342 (470)
Q Consensus 298 -----~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 342 (470)
++.|.+.. ++..--...++.++|.-|....++.+++.|+.+..+.
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~q 236 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQ 236 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 12333322 2333334567899999999999999999997555443
No 322
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=58.20 E-value=97 Score=27.21 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhccc----CccchHHH--HHHHHHHHH-----Hc-------CCHHHHHHHHHH--H
Q psy16214 237 EEGNEKFVAGKNQEAFDIYTEALKIDAR----NININSKL--LHNRATVLF-----KM-------GKYNEAIADCTL--A 296 (470)
Q Consensus 237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~--~~~la~~~~-----~~-------g~~~~A~~~~~~--a 296 (470)
..|.-++..|++++|+..|+.++..-|- +......+ +..++.-|. ++ .+....++..-- -
T Consensus 119 k~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT~ 198 (325)
T 3mv2_A 119 NEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFTK 198 (325)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhcc
Confidence 3489999999999999999999865432 11111111 111111111 11 111111111100 0
Q ss_pred HHhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHH
Q psy16214 297 LEKDPNYL-KALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNF 342 (470)
Q Consensus 297 l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 342 (470)
.++.|.+. -++..--...++.++|.-|....++.+++.|+.+..+.
T Consensus 199 c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q 245 (325)
T 3mv2_A 199 AKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ 245 (325)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 11223322 22333334567899999999999999999997554443
No 323
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=57.43 E-value=14 Score=25.74 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEA 30 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~a 30 (470)
+...|...-..|+|++|+.+|..+
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~A 41 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEG 41 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444444444444444443
No 324
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=56.82 E-value=8.3 Score=34.84 Aligned_cols=29 Identities=0% Similarity=0.094 Sum_probs=19.0
Q ss_pred chhhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q psy16214 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPD 387 (470)
Q Consensus 357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd 387 (470)
.++..+.. ..+.++|...++.+...+...
T Consensus 220 ~W~~~~~~--~vt~~~l~~i~~~il~~y~~~ 248 (358)
T 2pk2_A 220 HWWEYVDA--TVTLELLDELTHEFLQILEKT 248 (358)
T ss_dssp CTTTTSCS--SCCHHHHHHHHHHHHHHTTTC
T ss_pred chHHHHhc--cCCHHHHHHHHHHHHHHHHhC
Confidence 45555532 346788888888888777443
No 325
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=56.63 E-value=17 Score=36.08 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy16214 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD 87 (470)
Q Consensus 38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 87 (470)
.......|...+..|+|.-|.+.+..++..+|++..+...++.+|.++|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45566677777788888888888888888888888888888888877764
No 326
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.50 E-value=87 Score=25.82 Aligned_cols=50 Identities=10% Similarity=0.089 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 287 NEAIADCTLALEK--DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 287 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
+++...|.-.... .-..+..|...|..+...|++.+|...|+..++..-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4666777766654 4566888999999999999999999999999987643
No 327
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=55.48 E-value=71 Score=24.79 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=32.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccC--cc--chHHHH-HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARN--IN--INSKLL-HNRATVLFKMGKYNEAIADCTLALE 298 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~--~~--~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~ 298 (470)
+..++..|+|=+|-+.++.+....+.. .. +...+. ...|..+...|+...|...+.+++.
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666666777777777777776554432 11 112222 2233344455666666666666654
No 328
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.66 E-value=70 Score=24.53 Aligned_cols=50 Identities=4% Similarity=-0.066 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 287 NEAIADCTLALEK--DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 287 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.++.+.|.-.... ....+..|...|..+...|++.+|...|+..++....
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3477777776654 4566888999999999999999999999999987643
No 329
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.22 E-value=75 Score=24.74 Aligned_cols=61 Identities=7% Similarity=0.019 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 270 SKLLHNRATVLFKMGKYNEAIADCTLALEK--DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
..+|...+... .++.+.|...... .-..+..|...|..+...|++.+|.+.|+..++....
T Consensus 66 LklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 66 LNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 34455545442 3366666666554 4567888999999999999999999999999997643
No 330
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=53.62 E-value=15 Score=26.88 Aligned_cols=11 Identities=36% Similarity=0.317 Sum_probs=5.3
Q ss_pred HHHHHHHHHHh
Q psy16214 21 SKALKCYSEAI 31 (470)
Q Consensus 21 ~~A~~~~~~al 31 (470)
+.|+.+..+|+
T Consensus 16 ~kAi~lv~~Av 26 (117)
T 2cpt_A 16 QKAIDLASKAA 26 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555544
No 331
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=53.00 E-value=0.045 Score=50.99 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy16214 7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG 86 (470)
Q Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 86 (470)
.-..|..++..|.|+.|.-+|..+ .-|..+|.++..+|+|..|++..++| +++..|-....++...+
T Consensus 147 iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~ 213 (624)
T 3lvg_A 147 IQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK 213 (624)
T ss_dssp THHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSC
T ss_pred HHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCch
Confidence 345677777777777777666543 22456777777888888777766554 45666777777777777
Q ss_pred ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 87 DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH 164 (470)
Q Consensus 87 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 164 (470)
++.-|..+--.++-....-.+.. ..+-..|.+++-+.+++..+.+..-.......+|.+|.+
T Consensus 214 EfrLAqicGLniIvhadeL~elv----------------~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 214 EFRLAQMCGLHIVVHADELEELI----------------NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp TTTTTTHHHHHHHCCSSCCSGGG----------------SSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHhcchhcccHHHHHHHH----------------HHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 77777666555443211111110 012234555555666666665555555555555555543
No 332
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=52.72 E-value=55 Score=22.69 Aligned_cols=27 Identities=7% Similarity=0.031 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC
Q psy16214 9 EDGNTQYKLKQYSKALKCYSEAISVCP 35 (470)
Q Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p 35 (470)
..|..++..|+|=+|=+.++.+....|
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~ 32 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKAT 32 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 345556666666666666666555554
No 333
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=51.20 E-value=40 Score=22.73 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=11.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEAL 259 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al 259 (470)
|...-..|++++|+.+|..++
T Consensus 26 Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 444445566666665555554
No 334
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=51.12 E-value=35 Score=27.77 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPN 36 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 36 (470)
-++.+|..++..++|.+|.+.+..|+...|.
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 3445555555555555555555555555443
No 335
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.92 E-value=1e+02 Score=25.23 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214 88 APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH 164 (470)
Q Consensus 88 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 164 (470)
.+.|+..++.+-+-.+-........-.+. .......++++|.+++|...+++.+..++.+......+..+-..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~ll----k~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLV----KEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHH----HHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 35677777766555543333322222221 12223345666777777777777766655555555555444333
No 336
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=48.72 E-value=85 Score=23.75 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=45.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhh
Q psy16214 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL 215 (470)
Q Consensus 159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 215 (470)
-..+...|+-++--+.+..++...+-+++.+..+|.+|.+.|+..+|.+.+.++-+.
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 345667888888888888877777778999999999999999999999998888664
No 337
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=48.56 E-value=36 Score=31.79 Aligned_cols=103 Identities=10% Similarity=-0.056 Sum_probs=61.2
Q ss_pred ChHHHHHHHHHHHhhCCChHHHHH--H--HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc--cCc----cchH
Q psy16214 201 KMDLAVNHFQLLLKLAPDHAKAKE--T--YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA--RNI----NINS 270 (470)
Q Consensus 201 ~~~~A~~~~~~~l~~~p~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~~~ 270 (470)
..+++...+.++....-.+...-. . -++....--....-.+|++.++...+...++..-...+ .-. ....
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 355666777777665322211100 0 01222223333445788888888888888865444322 100 0134
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q psy16214 271 KLLHNRATVLFKMGKYNEAIADCTLALEK-DPNY 303 (470)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 303 (470)
..++.+|..+...++|.+|.+.+..|+.. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 66778889998899999999999988887 6654
No 338
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=45.88 E-value=1.2e+02 Score=24.57 Aligned_cols=80 Identities=15% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHh---------hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHH
Q psy16214 206 VNHFQLLLK---------LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNR 276 (470)
Q Consensus 206 ~~~~~~~l~---------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~l 276 (470)
...+++|+. .||-...+|..+ +..+ ..+...++...|.-.....-... .+..|...
T Consensus 57 ~~lLErc~~~F~~~~rYkND~RYLklWl~Y------------a~~~-~~~~~~~p~~if~~L~~~~IG~~--~AlfYe~w 121 (202)
T 3esl_A 57 RSTMERCLIYIQDMETYRNDPRFLKIWIWY------------INLF-LSNNFHESENTFKYMFNKGIGTK--LSLFYEEF 121 (202)
T ss_dssp HHHHHHHHHHHTTCGGGTTCHHHHHHHHHH------------HHHH-STTCHHHHHHHHHHHHHHTSSTT--BHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHH------------HHhh-cccccCCHHHHHHHHHHCCCcHH--HHHHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214 277 ATVLFKMGKYNEAIADCTLALEKD 300 (470)
Q Consensus 277 a~~~~~~g~~~~A~~~~~~al~~~ 300 (470)
|..+...|++.+|.+.|+..++..
T Consensus 122 A~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 122 SKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
No 339
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=45.71 E-value=1.6e+02 Score=25.92 Aligned_cols=47 Identities=15% Similarity=-0.038 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 272 LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
++..--...++.++|..|....++.+++.|....+ ++|.+.+..+-+
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a--------------~qArkil~~ce~ 255 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA--------------EQARKIKNKADS 255 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH--------------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH--------------HHHHHHHHHHhc
Confidence 33344445678999999999999999999964422 556666665554
No 340
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=45.66 E-value=33 Score=33.98 Aligned_cols=52 Identities=17% Similarity=0.085 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy16214 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122 (470)
Q Consensus 71 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 122 (470)
-.......|+.....|+|.-|.+....++..+|+|..+...++..+...+.-
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 4566777888888999999999999999999999999999999998887754
No 341
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=45.47 E-value=47 Score=22.37 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=9.3
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q psy16214 240 NEKFVAGKNQEAFDIYTEAL 259 (470)
Q Consensus 240 ~~~~~~~~~~~A~~~~~~al 259 (470)
...-+.|++++|+.+|..++
T Consensus 19 ve~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 19 VKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 33334455555555544443
No 342
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=45.38 E-value=48 Score=26.16 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214 288 EAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336 (470)
Q Consensus 288 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 336 (470)
.|...+..+...+|....+.-.+..++..+.+....+..|..-+..+|.
T Consensus 74 ~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 74 EAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 4555555556666666666677777777777776666666666666663
No 343
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=45.04 E-value=22 Score=23.69 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 306 ALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 306 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
-...+|+=+..+|+|+.|+.+|+.+++
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 345678888888888888888888775
No 344
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=44.50 E-value=68 Score=22.22 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=31.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcccCcc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKIDARNIN--INSKLLHNRATVLFKMGKYNEAIADCTLALE 298 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (470)
|..++..|+|=+|-+.++......|.... ....+....|..+...|+. |...+.+++.
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 66666777777777777777665543111 1122222233344455555 6666666654
No 345
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=40.58 E-value=84 Score=21.34 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCh
Q psy16214 305 KALSRRCKCFHALGQYKECVIDAEKIYKMDNSR 337 (470)
Q Consensus 305 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 337 (470)
.....-|.-+.+.++|.+|...|+++..+..++
T Consensus 54 r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~ 86 (106)
T 2vkj_A 54 RSLIAEGKDLFETANYGEALVFFEKALNLSDNE 86 (106)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHccccCH
Confidence 344445555566666666666666666555443
No 346
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=40.48 E-value=1.4e+02 Score=27.89 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=56.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccCc-
Q psy16214 191 VRGLCLYYDDKMDLAVNHFQLLLKLAP--DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI-DARNI- 266 (470)
Q Consensus 191 ~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~- 266 (470)
.+-.+|++.++...+...++..-...+ .... ......+.-.+-.|..++..++|.+|.+.+..|+.. .|.+.
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~----~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~ 256 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNE----YQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLT 256 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGG----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhh----CCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcccc
Confidence 445778899999999888876544322 1110 000011111122399999999999999999999998 88642
Q ss_pred -----cchHHHHHHHHHHHHHcCCH
Q psy16214 267 -----NINSKLLHNRATVLFKMGKY 286 (470)
Q Consensus 267 -----~~~~~~~~~la~~~~~~g~~ 286 (470)
.....++..+--+-+-+|++
T Consensus 257 ~~~~~~n~~~ILkyLIpv~LLlG~~ 281 (455)
T 3t5v_B 257 NQAITRNGTRILNYMIPTGLILGKM 281 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhhhhHHHHHHHHHHHHHHHcCCC
Confidence 11123344444455556765
No 347
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=39.32 E-value=1.8e+02 Score=24.69 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CC-ChHHHHHHHHHH
Q psy16214 153 TYKLMKAECLAHLNRLQEAQEIANSILATD--KQ-NPDAVFVRGLCL 196 (470)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~ 196 (470)
.-+..+|.+..+.++|++.+.++++++..+ +. +.+-...+..+|
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaY 55 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAY 55 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 344567888888999999999999998876 43 444555555555
No 348
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=36.97 E-value=85 Score=21.63 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=7.8
Q ss_pred HcCCHHHHHHHHHHHH
Q psy16214 282 KMGKYNEAIADCTLAL 297 (470)
Q Consensus 282 ~~g~~~~A~~~~~~al 297 (470)
..|+|++|+.+|..++
T Consensus 27 ~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 27 AESRYQQALVCYQEGI 42 (93)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 3455555555554433
No 349
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=36.81 E-value=88 Score=29.17 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 304 LKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 304 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
.-++..+|++|+.+|++++|....++++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 55677778888888888888888887774
No 350
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=36.48 E-value=1.8e+02 Score=24.10 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-ChHHHHHHHHHH
Q psy16214 154 YKLMKAECLAHLNRLQEAQEIANSILATDKQ-NPDAVFVRGLCL 196 (470)
Q Consensus 154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~ 196 (470)
-+..+|.+..+.++|++.+.+.++++..++. +.+-...+..+|
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvay 50 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 50 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 3456788888899999999999999887654 344455555555
No 351
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=35.05 E-value=1.5e+02 Score=22.79 Aligned_cols=87 Identities=11% Similarity=0.084 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHcCChHH-HHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNV--AAYYGNRAACYMMLGMYTY-ALDDAKLAVSLDPRFSKGLIRQIKCN 82 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~ 82 (470)
.-+..+...|-..+|...|..++.. +|.. ....+.+|.+|....++.+ ........+.+.. .-.+.+=++|
T Consensus 10 ~a~i~a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkS---de~yL~YWIy 83 (161)
T 2ynq_A 10 EAYIQSTELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKT---DEQYMLYWIY 83 (161)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccC---CHHHHHHHHH
Confidence 3456788899999999999888753 4543 5678899999999887653 3333333332222 1223344677
Q ss_pred HHcCChHHHHHHHHHH
Q psy16214 83 IALGDAPTARSNLKAL 98 (470)
Q Consensus 83 ~~~g~~~~A~~~~~~~ 98 (470)
.-.|++++|+..-..+
T Consensus 84 iGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 84 IGRSQSEEALELARTI 99 (161)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HcCCchHHHHHHHHhc
Confidence 7789999999887765
No 352
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=34.39 E-value=98 Score=28.92 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 304 LKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 304 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
.-++..+|++|+.+|+|++|....++++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45666777777777777777777777765
No 353
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=33.81 E-value=2.4e+02 Score=25.21 Aligned_cols=44 Identities=9% Similarity=-0.198 Sum_probs=33.2
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214 57 ALDDAKLAVSL-----DPRFSKGLIRQIKCNIALGDAPTARSNLKALQE 100 (470)
Q Consensus 57 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 100 (470)
++..|.+++.. ...+.--|..+|-++++.+++.+|+..+-.+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 55666666653 344566778889999999999999999887754
No 354
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=33.20 E-value=92 Score=20.91 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=9.0
Q ss_pred HhcCCHHHHHHHHHHHH
Q psy16214 243 FVAGKNQEAFDIYTEAL 259 (470)
Q Consensus 243 ~~~~~~~~A~~~~~~al 259 (470)
-..|++++|+.+|..++
T Consensus 24 D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34455555555555544
No 355
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=32.21 E-value=1.2e+02 Score=20.55 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=11.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q psy16214 276 RATVLFKMGKYNEAIADCTLAL 297 (470)
Q Consensus 276 la~~~~~~g~~~~A~~~~~~al 297 (470)
.|.-.-..|++++|+.+|..++
T Consensus 22 ~Ave~D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 22 RAVELDSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333445556666665555444
No 356
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=31.28 E-value=5.4e+02 Score=27.89 Aligned_cols=51 Identities=22% Similarity=0.130 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q psy16214 300 DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLL 350 (470)
Q Consensus 300 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~ 350 (470)
++++..+.....+-....++|-.|++++.++++-.|..+..+.+.++...+
T Consensus 1280 d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~~~~~~~~~~~~~~l 1330 (1354)
T 3lxu_X 1280 DANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRTRDHFVELAAINGAL 1330 (1354)
T ss_dssp CTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHc
Confidence 455555554444444578999999999999999998877665554443333
No 357
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=31.10 E-value=2.7e+02 Score=24.39 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214 272 LLHNRATVLFKMGKYNEAIADCTLALEKDPN 302 (470)
Q Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (470)
++..--...++.++|..|....++.|++.|.
T Consensus 200 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 200 VLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3333344567899999999999999999886
No 358
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=30.86 E-value=1.2e+02 Score=28.67 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 304 LKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 304 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
.-++..+|++|+.++++++|....++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445666677777777777777777776653
No 359
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=30.50 E-value=1.1e+02 Score=28.78 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 304 LKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 304 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
.-++..+|++|+..|+|++|....++++..
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 557777888888888888888888888764
No 360
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=30.13 E-value=1e+02 Score=22.33 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=8.0
Q ss_pred cCCHHHHHHHHHHHHH
Q psy16214 283 MGKYNEAIADCTLALE 298 (470)
Q Consensus 283 ~g~~~~A~~~~~~al~ 298 (470)
.|+|++|+.+|..+++
T Consensus 31 ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 31 AGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3555555555555444
No 361
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=30.00 E-value=2.5e+02 Score=23.71 Aligned_cols=59 Identities=8% Similarity=0.025 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHh-ccCChHHHHHHHH
Q psy16214 152 KTYKLMKAECLAHLNRLQEAQEIANSILATDKQ-NPDAVFVRGLCLY-YDDKMDLAVNHFQ 210 (470)
Q Consensus 152 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~ 210 (470)
..-+..+|.+..+.++|++.+...++++..++. +.+-...+..+|- ..|....+...+.
T Consensus 31 re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiis 91 (261)
T 3ubw_A 31 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIIS 91 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHh
Confidence 345566888999999999999999999987764 3445555665552 2244444444443
No 362
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=35.33 E-value=12 Score=37.19 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q psy16214 39 AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP 89 (470)
Q Consensus 39 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 89 (470)
+.....|...+..|+|.-|.+.++.++..+|++..+...++.+|.++|.-.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 334455555666666666666666666666666666666666666666443
No 363
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=27.39 E-value=1.5e+02 Score=28.05 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (470)
...++..+|++|+.++++++|+..+++++...
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45678889999999999999999999999753
No 364
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=27.14 E-value=2.8e+02 Score=23.27 Aligned_cols=57 Identities=5% Similarity=-0.021 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-hHHHHHHHHHHh-ccCChHHHHHHHH
Q psy16214 154 YKLMKAECLAHLNRLQEAQEIANSILATDKQN-PDAVFVRGLCLY-YDDKMDLAVNHFQ 210 (470)
Q Consensus 154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~-~~g~~~~A~~~~~ 210 (470)
-+..+|.+..+.++|++.+.+.++++..++.- .+-...+..+|- ..|....+...+.
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiis 64 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVIS 64 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 34567888899999999999999998877643 444555555552 2233444444443
No 365
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=26.98 E-value=1.9e+02 Score=26.44 Aligned_cols=76 Identities=4% Similarity=-0.064 Sum_probs=47.7
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q psy16214 239 GNEKFVAG---KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK-----DPNYLKALSRR 310 (470)
Q Consensus 239 ~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l 310 (470)
-..++..| +|.-|+-.+-..-++.|..... .++..|.+++.. ...+..-|..+
T Consensus 264 LWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~-------------------~~~~L~~~AI~sa~~~Y~n~HvYPYtYl 324 (550)
T 3u84_A 264 LWLLYDLGHLERYPMALGNLADLEELEPTPGRP-------------------DPLTLYHKGIASAKTYYRDEHIYPYMYL 324 (550)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCC-------------------CHHHHHHHHHHHHHHHSTTCCSHHHHHH
T ss_pred HHHHHhccchhhCchhhcchhhHhhcCCCCCCC-------------------CHHHHHHHHHHHHHHHhccCCccceeec
Confidence 34444443 4556666665555555542211 145555555543 34456677888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 311 CKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 311 a~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
|-++.+.+++.+|+..|-.+-..
T Consensus 325 gGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 325 AGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhhcchHHHHHHHHHHHHHH
Confidence 89999999999999999887654
No 366
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.87 E-value=86 Score=22.66 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----hhHHHHHHHHHHHhhcc
Q psy16214 286 YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-----RENHNFLEEAKRLLKRS 353 (470)
Q Consensus 286 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----~~~~~~l~~~~~~~~~~ 353 (470)
+++|..+..++|.++. .+.-...+.-|.+.+..+.+++.+..+ .+.++...+.+..++..
T Consensus 19 h~~AF~~Is~AL~~DE--------~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~n 83 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDE--------LGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKET 83 (116)
T ss_dssp HHHHHHHHHHHHHHHH--------HTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh--------cCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
No 367
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=26.77 E-value=84 Score=22.30 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEA 30 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~a 30 (470)
..+...|....+.|+|++|.+.+.++
T Consensus 21 rS~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 21 RSKLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33444444455555555555555444
No 368
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=26.52 E-value=86 Score=22.15 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEA 30 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~a 30 (470)
..+...|....+.|+|++|.+.++++
T Consensus 19 rs~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 19 RSLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444455555555555555555544
No 369
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=26.24 E-value=1.3e+02 Score=27.97 Aligned_cols=31 Identities=10% Similarity=-0.158 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214 71 FSKGLIRQIKCNIALGDAPTARSNLKALQEL 101 (470)
Q Consensus 71 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 101 (470)
...++..+|++|+..|++++|....++++..
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3567888999999999999999999998863
No 370
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=24.27 E-value=99 Score=21.05 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16214 4 AEKHKEDGNTQYKLKQYSKALKCYSE 29 (470)
Q Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~ 29 (470)
+..|+.-|..++..|++..|+.++.=
T Consensus 39 A~~Y~~Da~~fl~kGD~v~Ala~isY 64 (87)
T 2pmr_A 39 ALNYRDDSVYYLEKGDHITSFGCITY 64 (87)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666667777777777777766543
No 371
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=24.24 E-value=1.6e+02 Score=27.54 Aligned_cols=30 Identities=7% Similarity=0.001 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214 72 SKGLIRQIKCNIALGDAPTARSNLKALQEL 101 (470)
Q Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 101 (470)
..++..+|++|+..|++++|....++++..
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 557788899999999999999999888864
No 372
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=24.23 E-value=3.1e+02 Score=22.79 Aligned_cols=58 Identities=7% Similarity=0.035 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHh-ccCChHHHHHHHH
Q psy16214 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQ-NPDAVFVRGLCLY-YDDKMDLAVNHFQ 210 (470)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~ 210 (470)
.-+..+|.+..+.++|++.+.+.+++...++. +.+-...+..+|- ..|....+...+.
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiis 68 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLS 68 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 44566888899999999999999999887764 3445555565552 2244444444443
No 373
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=24.15 E-value=1e+02 Score=20.94 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16214 3 SAEKHKEDGNTQYKLKQYSKALKCYSE 29 (470)
Q Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~ 29 (470)
.+..|+.-|..++..|++..|+.++.=
T Consensus 34 mA~~Y~~Da~~fl~kGD~v~Ala~isY 60 (86)
T 2oo2_A 34 NIEAYISDSRYFLEKGDLVRAFECVVW 60 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356677777778888888877776653
No 374
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.14 E-value=1.6e+02 Score=23.70 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHcCChH---HHHHHHHHHH
Q psy16214 39 AYYGNRAACYMMLGMYT---YALDDAKLAV 65 (470)
Q Consensus 39 ~~~~~~a~~~~~~g~~~---~A~~~~~~al 65 (470)
+.|+.-+.-+++.+++. +.....+-++
T Consensus 23 Dfyf~~~c~aFR~~r~~dFrq~rdi~eall 52 (211)
T 3bqo_A 23 DFLCLSLCRAFRDGRSEDFRRTRNSAEAII 52 (211)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44455555556666544 3444444444
No 375
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=23.63 E-value=1e+02 Score=22.01 Aligned_cols=26 Identities=12% Similarity=0.003 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 5 EKHKEDGNTQYKLKQYSKALKCYSEA 30 (470)
Q Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~a 30 (470)
..+...|....+.|+|++|.+.++++
T Consensus 23 rs~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 23 RSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444455555555555555544
No 376
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=23.56 E-value=1.5e+02 Score=27.65 Aligned_cols=30 Identities=7% Similarity=-0.084 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214 72 SKGLIRQIKCNIALGDAPTARSNLKALQEL 101 (470)
Q Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 101 (470)
..++..+|++|+..|++++|....+.++..
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 567888999999999999999999998863
No 377
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.43 E-value=4.1e+02 Score=23.98 Aligned_cols=94 Identities=5% Similarity=-0.161 Sum_probs=63.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhc-------------ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKID-------------ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK------ 299 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~-------------p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 299 (470)
..+.....+.++|++.+++..... ..+......+...++..|...++..+|...++++-..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344556678899999988764321 0111223456667888999999999999999888643
Q ss_pred -CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214 300 -DPN-YLKALSRRCKCFHALGQYKECVIDAEKIYK 332 (470)
Q Consensus 300 -~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 332 (470)
+|. ....+...+..+...+++..+....-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 111 244556677788888999888777666664
No 378
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.24 E-value=4.2e+02 Score=23.95 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=45.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhc----ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16214 239 GNEKFVAGKNQEAFDIYTEALKID----ARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298 (470)
Q Consensus 239 ~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (470)
+..++..++.++|...++++-..- .-++......+...+..+...+++..+....-..+.
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888899999999999998886431 112334567777788888899999888777766665
No 379
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=23.05 E-value=7.5e+02 Score=26.83 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=30.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q psy16214 281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYK 321 (470)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 321 (470)
...++|-.|++++.++++-.|. -+.+..++.++..+|--.
T Consensus 1295 ~~~~~~g~~~k~l~k~~~~k~~-~~~~~~~~~~~~~l~w~h 1334 (1354)
T 3lxu_X 1295 YAHGHYGRMYKYVVKLIEEKRT-RDHFVELAAINGALGHEH 1334 (1354)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHcCCHH
Confidence 3678888888888888887764 567777778877777543
No 380
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=22.68 E-value=1.1e+02 Score=22.33 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214 6 KHKEDGNTQYKLKQYSKALKCYSEA 30 (470)
Q Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~a 30 (470)
.+...|....+.|+|++|.+.++++
T Consensus 39 S~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 39 SIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444444444444444444443
No 381
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=21.85 E-value=2.8e+02 Score=25.43 Aligned_cols=62 Identities=6% Similarity=-0.111 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214 269 NSKLLHNRATVLFKMGKYNE--AIADCTLALEK-----DPNYLKALSRRCKCFHALGQYKECVIDAEKI 330 (470)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 330 (470)
.+.++.+||.+--..-.... ++..|.+|+.. ...+...|..+|-.+.+.+++.+|+..+..+
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhh
No 382
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=21.44 E-value=2.2e+02 Score=26.99 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214 304 LKALSRRCKCFHALGQYKECVIDAEKIYKM 333 (470)
Q Consensus 304 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 333 (470)
.-++..+|++++..+++++|....++++..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557788888999999999999999988863
No 383
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.19 E-value=3.4e+02 Score=22.19 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214 202 MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR 264 (470)
Q Consensus 202 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 264 (470)
.+.|+..++..-.-.+-..........+.... ...++.+.|.|++|.+.+++.+..++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~q----AV~VCiek~~f~kA~eiLkr~~~~~~s 146 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEA----AVIICIKNKEFEKASKILKKHMSKDPT 146 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----HHHHHHHTTCHHHHHHHHHHHSTTCGG
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH----HHHHHHHhcchHHHHHHHHHHhcCCCC
Confidence 35677777766655543333322222211111 155678889999999999998887665
No 384
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.16 E-value=1.6e+02 Score=26.90 Aligned_cols=74 Identities=11% Similarity=-0.001 Sum_probs=49.8
Q ss_pred HHHHhcC---CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHH
Q psy16214 12 NTQYKLK---QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-----DPRFSKGLIRQIKCNI 83 (470)
Q Consensus 12 ~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~ 83 (470)
..++..| +|.-|+-.+-..-++.|..... .++..|.+++.. ...+.--|..+|-+++
T Consensus 265 WlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~---------------~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~y 329 (550)
T 3u84_A 265 WLLYDLGHLERYPMALGNLADLEELEPTPGRP---------------DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHC 329 (550)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCC---------------CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred HHHHhccchhhCchhhcchhhHhhcCCCCCCC---------------CHHHHHHHHHHHHHHHhccCCccceeecchhhh
Confidence 4444444 6788888888877777763210 034444444442 3456677888888999
Q ss_pred HcCChHHHHHHHHHHHh
Q psy16214 84 ALGDAPTARSNLKALQE 100 (470)
Q Consensus 84 ~~g~~~~A~~~~~~~l~ 100 (470)
+.+++.+|+..+-.+-.
T Consensus 330 R~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 330 RNRNVREALQAWADTAT 346 (550)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHH
Confidence 99999999999887754
No 385
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=20.62 E-value=2.3e+02 Score=19.97 Aligned_cols=75 Identities=17% Similarity=0.065 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q psy16214 133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL 212 (470)
Q Consensus 133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 212 (470)
..++|..+.+ .+...+...-+...+...+...|+|++|....+... .|+.--.++.+-.+.|-.+++...+.+.
T Consensus 21 ~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 21 CHEEALCIAE-WLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDRRLAGL 94 (115)
T ss_dssp CHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4455544433 344445544455667788899999999988765432 5677777888889999998888877444
Q ss_pred H
Q psy16214 213 L 213 (470)
Q Consensus 213 l 213 (470)
-
T Consensus 95 a 95 (115)
T 2uwj_G 95 G 95 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 386
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=20.35 E-value=2.3e+02 Score=19.96 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q psy16214 133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL 212 (470)
Q Consensus 133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 212 (470)
..++|..+.+ .+...+...-+...+...+...|+|++|....+... .|+.--.++.+-.+.|-.+++...+.+.
T Consensus 22 ~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 22 YHEEANCIAE-WLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRLNRL 95 (116)
T ss_dssp CHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4455544433 344445544455667788899999999998876543 5666677788888889888887776443
No 387
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.32 E-value=2.1e+02 Score=23.06 Aligned_cols=41 Identities=10% Similarity=0.016 Sum_probs=22.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc
Q psy16214 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY 198 (470)
Q Consensus 158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 198 (470)
...++...|.+++|.+.+++....++.+......|..+-..
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 44566777778888888877777666655555444444433
Done!