RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16214
(470 letters)
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 117 bits (295), Expect = 3e-29
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 12/118 (10%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY+ILGV+K+AS ++IKKAYRK A +HPDR+ +A +EK FKE+ EAY +LS
Sbjct: 4 RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEA----EEK-FKEINEAYEVLS 58
Query: 416 DPTKRSRYDR-GEDIMEDSGMGG----HAGANLFEQHMFQTYFDPGCRARGSNVRFQY 468
DP KR+ YD+ G + G GG G + + +F+ +F G R R +
Sbjct: 59 DPEKRAAYDQFGHAGFKAGGFGGFGFGGFGGDFGD--IFEDFFGGGGGGRRRPNRPRR 114
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 115 bits (290), Expect = 1e-28
Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 7/94 (7%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
DYY+ILGV+K+AS ++IKKAYRK A +HPDR+ + E E+ FKE+ EAY +LSD
Sbjct: 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDK------EAEEKFKEINEAYEVLSD 54
Query: 417 PTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMF 449
P KR++YD+ G G GG G N F+ F
Sbjct: 55 PEKRAQYDQFGHAGFNGGGGGGGGGFNGFDIGFF 88
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 113 bits (286), Expect = 7e-28
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 12/116 (10%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY++LGV++NAS D+IKKAYRK A+ +HPDR+ +A E+ FKE+ EAY +LS
Sbjct: 4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEA-----EEKFKEIKEAYEVLS 58
Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAG-----ANLFEQHMFQTYFDPGCRARGSNVR 465
DP KR+ YD+ G E G GG G ++F +F F G R
Sbjct: 59 DPQKRAAYDQYGHAAFEQGGGGGGFGGGGGFGDIFGD-IFGDIFGGGRGGGRQRAR 113
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 100 bits (251), Expect = 3e-23
Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 9/115 (7%)
Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
+DYY+ILGVT++AS ++IKK+YRK A+ +HPDR+ +A E+LFKE EAY
Sbjct: 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEA-----EELFKEAAEAYE 55
Query: 413 ILSDPTKRSRYDR-GEDIMEDSGMGGHAG-ANLFEQ--HMFQTYFDPGCRARGSN 463
+LSDP KR YD+ G + + +G G +G ++F +F+ +F G RG +
Sbjct: 56 VLSDPKKRGIYDQYGHEGLSGTGFSGFSGFDDIFSSFGDIFEDFFGFGGGRRGRS 110
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 99.5 bits (248), Expect = 7e-23
Identities = 45/94 (47%), Positives = 63/94 (67%), Gaps = 9/94 (9%)
Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
+E +DYY++LGV+K A+ D+IKKAYRK+A+ +HPD++ +A E+ FKE EAY
Sbjct: 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEA-----EEKFKEAAEAYD 56
Query: 413 ILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQ 446
+LSDP KRSRYD+ +G+GG AG F
Sbjct: 57 VLSDPDKRSRYDQ----FGHAGVGGAAGGGGFSG 86
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in Prosite
are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 91.1 bits (227), Expect = 8e-23
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 5/68 (7%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
DYY+ILGV ++AS ++IKKAYRK AL +HPD++ A E+ FKE+ EAY +LSD
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAA-----EEKFKEINEAYEVLSD 55
Query: 417 PTKRSRYD 424
P KR+ YD
Sbjct: 56 PEKRAIYD 63
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 97.6 bits (243), Expect = 3e-22
Identities = 51/134 (38%), Positives = 74/134 (55%), Gaps = 30/134 (22%)
Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
+ +DYY+ILG++K+AS +DIKKAYRK A+ +HPD++ +K FKE+ EAY
Sbjct: 2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEK------FKEISEAYA 55
Query: 413 ILSDPTKRSRYDR-----------GEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRA-- 459
+LSD KR++YDR EDI + GG F +F+ +F G R
Sbjct: 56 VLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGADFGG------FGD-IFEMFFGGGGRRGR 108
Query: 460 ----RGSNVRFQYY 469
RGS++R+ Y
Sbjct: 109 MGPRRGSDLRYDLY 122
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 97.1 bits (242), Expect = 4e-22
Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 6/88 (6%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY++LGV+++AS D+IKKAYRK AL +HPDR+ + +A E+ FKE EAY +L
Sbjct: 4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEA-----EQKFKEAAEAYEVLR 58
Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGAN 442
D KR+RYDR G + +G G +
Sbjct: 59 DAEKRARYDRFGHAGVNGNGGFGGFSSA 86
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 94.0 bits (234), Expect = 5e-21
Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 12/114 (10%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY++LGV+K+AS D+IKKAYRK + +HPD + +K FKE+ EAY +LS
Sbjct: 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEK------FKEISEAYEVLS 57
Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGANLFE-----QHMFQTYFDPGCRARGSN 463
D KR++YD+ G GG G F + +F ++F G R R N
Sbjct: 58 DDQKRAQYDQFGHAGPNQGFGGGGFGGGDFGGGFGFEDIFSSFFGGGGRRRDPN 111
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 93.3 bits (232), Expect = 1e-20
Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
KD+YK LGV+ +AS+++IKKAYRK A HPD + A E+ FK V EA+ +LS
Sbjct: 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAA-----EERFKAVSEAHDVLS 63
Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGAN 442
DP KR YD + G GG
Sbjct: 64 DPAKRKEYDETRRLFAGGGFGGRRFDG 90
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 93.3 bits (232), Expect = 1e-20
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 9/103 (8%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
KDYY++LG+ K AS D+IKKA+RK A+ +HPD++ +A E+ FKE+ EAY +LS
Sbjct: 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEA-----EEKFKEINEAYQVLS 58
Query: 416 DPTKRSRYDR-GEDIMEDSG---MGGHAGANLFEQHMFQTYFD 454
DP K+++YD+ G +G GG G + + F FD
Sbjct: 59 DPQKKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFD 101
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 92.6 bits (230), Expect = 2e-20
Identities = 45/86 (52%), Positives = 56/86 (65%), Gaps = 7/86 (8%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
DYY ILGV+K AS ++IKKAYRK A+ +HPD++ +A EK FKEV EAY +LSD
Sbjct: 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEA-----EKRFKEVSEAYEVLSD 56
Query: 417 PTKRSRYDR-GED-IMEDSGMGGHAG 440
KR YDR G+D +G G AG
Sbjct: 57 AQKRESYDRYGKDGPFAGAGGFGGAG 82
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 91.3 bits (227), Expect = 4e-20
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY +LGV++NAS +IK+AYRK A HPD N + QEK FKE+ AY +LS
Sbjct: 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPD--VNPDEEA---QEK-FKEISVAYEVLS 56
Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGANLFEQ--HMFQTYFDPGCRARGSNVRFQ 467
DP KR D G D +E +G GG F +F+ +F G +RG R +
Sbjct: 57 DPEKRRIVDLGGDPLESAGGGGGGFGGGFGGLGDVFEAFFGGGAASRGPRGRVR 110
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 90.4 bits (225), Expect = 9e-20
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 17/103 (16%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
DYY+ILGV+++A D++K+AYR+ A +HPD + E FKE+ AY +LSD
Sbjct: 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPG------AEDRFKEINRAYEVLSD 57
Query: 417 PTKRSRYDR-GEDIMEDSGMGGHAGANLFEQ-----HMFQTYF 453
P R+RYD+ GE +G+ G AG +F+T+F
Sbjct: 58 PETRARYDQFGE-----AGVSGAAGFPDMGDMGGFADIFETFF 95
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 89.1 bits (221), Expect = 2e-19
Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
KDYY+ILGV +NA+ ++IKKAYR+ A +HPD + +A E+ FKE+ EAY ILS
Sbjct: 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEA-----EQKFKEINEAYEILS 59
Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAG 440
DP KR++YD+ D G G G
Sbjct: 60 DPQKRAQYDQFGHAAFDPGGFGQGG 84
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 88.7 bits (220), Expect = 3e-19
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
E KDYY+ILGV++NA+ ++IK+AY++ HPDRH + E E+ FKE+ EAY +
Sbjct: 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPE----NRKEAEQKFKEIQEAYEV 57
Query: 414 LSDPTKRSRYDR 425
LSDP KR+ YDR
Sbjct: 58 LSDPQKRAMYDR 69
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 80.7 bits (200), Expect = 3e-19
Identities = 36/64 (56%), Positives = 46/64 (71%), Gaps = 4/64 (6%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
DYY+ILGV ++AS D+IKKAYRK AL +HPD++ K E E+ FKE+ EAY +LS
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPG----DKEEAEEKFKEINEAYEVLS 56
Query: 416 DPTK 419
DP K
Sbjct: 57 DPEK 60
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 87.9 bits (218), Expect = 6e-19
Identities = 43/105 (40%), Positives = 56/105 (53%), Gaps = 21/105 (20%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
KDYY+ILGV++NA+ ++IKKAYR+ A +HPD + N E E+ FKE+ EAY +LS
Sbjct: 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP------EAEEKFKEINEAYQVLS 56
Query: 416 DPTKRSRYDRGEDIMEDSGMGGHA-----GANLFEQHMFQTYFDP 455
DP KR YD GHA G Q F +
Sbjct: 57 DPEKRKLYD----------QFGHAAFSGSGQQQQGQEGFSDFGGG 91
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 88.0 bits (218), Expect = 6e-19
Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
KDYYK+LGV K+A+ +IKKAYRK A +HPD + +A E+ FKE+ EAY +LS
Sbjct: 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKA-----EERFKEISEAYDVLS 63
Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGA 441
D KR YD + + G G
Sbjct: 64 DEKKRKEYDEARSLFGNGGFRPGPGG 89
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 87.9 bits (218), Expect = 7e-19
Identities = 46/115 (40%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY++LGV+++A D+IKKAYRK AL +HPD++ + +A E+ FKEV EAY +LS
Sbjct: 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEA-----EEHFKEVNEAYEVLS 57
Query: 416 DPTKRSRYDR------GEDIMEDSGMGGHAGANLFEQ--HMFQTYFDPGCRARGS 462
+ KR RYD+ G G G G F F F G R G
Sbjct: 58 NDDKRRRYDQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFGGGARRGGG 112
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 86.8 bits (215), Expect = 1e-18
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 10/101 (9%)
Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
+E +DYY++LGV +NA +IKKAYRK A +HPD +++ E+ FKE+ EAY
Sbjct: 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPD------VSEEEGAEEKFKEISEAYA 55
Query: 413 ILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYF 453
+LSD KR RYD+ +GM G + ++F F+ F
Sbjct: 56 VLSDDEKRQRYDQ----FGHAGMDGFSQEDIFNNINFEDIF 92
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 86.9 bits (215), Expect = 1e-18
Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
DYY++LGV++ AS+D+IK AYRK AL +HPDR+ A+K F ++ EAY +LSD
Sbjct: 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEK------FAQINEAYAVLSD 56
Query: 417 PTKRSRYDR 425
KR+ YDR
Sbjct: 57 AEKRAHYDR 65
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 85.8 bits (212), Expect = 3e-18
Identities = 44/82 (53%), Positives = 54/82 (65%), Gaps = 6/82 (7%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
KDYYKILGV +NAS +DIKKA+R+ A HPD H K E E+ FKE+ EAY +LS
Sbjct: 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPG----NKAEAEEKFKEISEAYEVLS 58
Query: 416 DPTKRSRYDRGEDIMEDSGMGG 437
DP KR +YD+ + D G GG
Sbjct: 59 DPQKRRQYDQTGTV--DFGAGG 78
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 84.8 bits (210), Expect = 8e-18
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+YY LGV+K+AS D+IKKAYRK + +HPD + +K +KEV EAY LS
Sbjct: 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEK------YKEVQEAYETLS 57
Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGA 441
DP KR+ YD+ + G GG AG
Sbjct: 58 DPQKRAAYDQYGAAGANGGFGGGAGG 83
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 82.7 bits (204), Expect = 1e-17
Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 6/70 (8%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
KDYY ILGV KNAS D+IKKA++K A +HPD + + E+ FKE+ EAY +LS
Sbjct: 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP------GAEEKFKEINEAYTVLS 57
Query: 416 DPTKRSRYDR 425
DP KR YD
Sbjct: 58 DPEKRRIYDT 67
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 75.7 bits (187), Expect = 2e-17
Identities = 32/60 (53%), Positives = 43/60 (71%), Gaps = 5/60 (8%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
DYY ILGV +AS ++IKKAYRK AL +HPD++ + +A E+ FKE+ EAY +LSD
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEA-----EEKFKEINEAYEVLSD 55
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 81.8 bits (202), Expect = 8e-17
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 12/110 (10%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+ Y++L ++K+ ++ +IKKAYRK A+ HHPD+ + EK FKE+ AY +LS
Sbjct: 28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG--------DPEK-FKEISRAYEVLS 78
Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGSNV 464
DP KR YD GE+ +E A ++LF+ +F PG + RG ++
Sbjct: 79 DPEKRKIYDEYGEEGLEGGEQPADA-SDLFD-LIFGGGRKPGGKKRGEDI 126
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 80.8 bits (199), Expect = 1e-16
Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 14/107 (13%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY+ILG++K AS D+IKKAYRK A+ +HPD++ +A E +FKE EAY +L
Sbjct: 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEA-----ESIFKEATEAYEVLI 57
Query: 416 DPTKRSRYDR-GEDIMEDSGM-----GGHAG-ANLFEQ--HMFQTYF 453
D KR++YDR G E G GG +G +++FE +F ++F
Sbjct: 58 DDNKRAQYDRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFF 104
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 80.1 bits (197), Expect = 2e-16
Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 9/114 (7%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY++LGV +NAS D++KKAYRK A +HPD + + + E FKEV EAY LS
Sbjct: 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVN------KAPDAEDKFKEVKEAYDTLS 57
Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGANLFE--QHMFQTYFDPGCRARGSNVRFQ 467
DP K++ YD+ + G GG GA F +F +F G R N Q
Sbjct: 58 DPQKKAHYDQFGHTDPNQGFGG-GGAGDFGGFSDIFDMFFGGGGGRRNPNAPRQ 110
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 77.2 bits (189), Expect = 6e-15
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 13/100 (13%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY++LG+ ++A +IKKA+RK A +HPDR+ + +F E+ EA +LS
Sbjct: 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP------DAASIFAEINEANDVLS 55
Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMFQTYFD 454
+P KR+ YD+ G D G+ + F+ +F ++F+
Sbjct: 56 NPKKRANYDKYGHD-----GVDREDDFD-FQADVFNSFFE 89
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 74.6 bits (183), Expect = 1e-14
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+ YY ILGV+K+A+ ++IK AYRK A+ +HPD++ ++ E+ FKE EAY IL
Sbjct: 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKES-----EEKFKEATEAYEILR 58
Query: 416 DPTKRSRYDRGEDIMEDSGMGGH-AGA 441
DP KR YD+ ++G GG GA
Sbjct: 59 DPKKRQAYDQFGKAGVNAGAGGFGQGA 85
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 73.1 bits (179), Expect = 5e-14
Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 22/127 (17%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY+ILGV+K AS D+KKAY K A +HPD T+A A EK FKE+ AY +L
Sbjct: 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDA-----EKKFKEINAAYDVLK 56
Query: 416 DPTKRSRYDR-GEDIMEDS----GMGGHAGANLFEQHMFQTYFD-----------PGCRA 459
D KR+ YDR G D ++ G G H G + +F +F +
Sbjct: 57 DEQKRAAYDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKV 116
Query: 460 RGSNVRF 466
RGS++++
Sbjct: 117 RGSDLKY 123
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 71.4 bits (174), Expect = 5e-14
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
S++ DYY+ILGV NAS ++IKKAYRK AL +HPDR+ E+ FKE+ EAY
Sbjct: 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGD----PKVAEEKFKEINEAYE 58
Query: 413 ILSDPTKRSRYDR 425
ILSDP +R+ YD+
Sbjct: 59 ILSDPERRAEYDK 71
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
in a variety of organisms including bacteria,
cyanobacteria, yeast, fungi, plants, and humans in
various subcellular locations; involved in a variety of
functions including protein-protein interactions, but
common features in the interaction partners have not
been defined; involved in chaperone, cell-cycle,
transciption, and protein transport complexes; the
number of TPR motifs varies among proteins (1,3-11,13
15,16,19); 5-6 tandem repeats generate a right-handed
helical structure with an amphipathic channel that is
thought to accomodate an alpha-helix of a target
protein; it has been proposed that TPR proteins
preferably interact with WD-40 repeat proteins, but in
many instances several TPR-proteins seem to aggregate to
multi-protein complexes; examples of TPR-proteins
include, Cdc16p, Cdc23p and Cdc27p components of the
cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
targeting signals, the Tom70p co-receptor for
mitochondrial targeting signals, Ser/Thr phosphatase 5C
and the p110 subunit of O-GlcNAc transferase; three
copies of the repeat are present here.
Length = 100
Score = 66.6 bits (163), Expect = 9e-14
Identities = 36/100 (36%), Positives = 48/100 (48%)
Query: 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLA 64
E GN YKL Y +AL+ Y +A+ + P+ A Y N AA Y LG Y AL+D + A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 65 VSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD 104
+ LDP +K LG A + ELDP+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
Score = 62.0 bits (151), Expect = 4e-12
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIAD 292
+A GN + G EA + Y +AL++D N +N A +K+GKY EA+ D
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALED 56
Query: 293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
ALE DP+ KA ++ LG+Y+E + EK ++D
Sbjct: 57 YEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98
Score = 47.0 bits (112), Expect = 7e-07
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 192 RGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEA 251
G Y D A+ +++ L+L PD+A A Y A GK +EA
Sbjct: 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAY--YNLAAAYYKL----------GKYEEA 53
Query: 252 FDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
+ Y +AL++D N K +N +K+GKY EA+ ALE DPN
Sbjct: 54 LEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
Score = 45.4 bits (108), Expect = 3e-06
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI 330
+ L N + +K+G Y+EA+ ALE DP+ A ++ LG+Y+E + D EK
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 331 YKMDNS 336
++D
Sbjct: 61 LELDPD 66
Score = 43.9 bits (104), Expect = 1e-05
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP 217
L EA E L D N DA + Y K + A+ ++ L+L P
Sbjct: 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65
Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262
D+AKA Y GK +EA + Y +AL++D
Sbjct: 66 DNAKAY--YNLGLAYYKL----------GKYEEALEAYEKALELD 98
Score = 43.1 bits (102), Expect = 2e-05
Identities = 22/97 (22%), Positives = 40/97 (41%)
Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
+ ++ DY A+ Y ++A++ + A L + +EA E L
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63
Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
D N A + GL Y K + A+ ++ L+L P+
Sbjct: 64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
Score = 27.3 bits (61), Expect = 5.6
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 41 YGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE 100
N Y LG Y AL+ + A+ LDP + LG A + + E
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 101 LDPDNP 106
LDPDN
Sbjct: 63 LDPDNA 68
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 67.0 bits (163), Expect = 4e-12
Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 10/108 (9%)
Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
YY+IL V K+++ + IKK+YRK AL +HPDR+ A E E+ FK + EAYG+LSD
Sbjct: 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRN-----AGDKEAEEKFKLINEAYGVLSDE 59
Query: 418 TKRSRYDR-GEDIMEDSGMGGHAGANLFEQ--HMFQTYFDPGCRARGS 462
KR+ YDR G+ + +G ++ FE F+ F G ARGS
Sbjct: 60 KKRALYDRYGKKGLNQAGASQSDFSDFFEDLGSFFEDAF--GFGARGS 105
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 66.0 bits (161), Expect = 6e-12
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
E+KDYY I+GV IK AYR+ A +HPD + E FKEV EA+ +
Sbjct: 2 ELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP------DAEARFKEVAEAWEV 55
Query: 414 LSDPTKRSRYDRGEDIMEDSGMG---GHAGANLFEQHMFQTYF 453
LSD +R+ YD+ D H F F F
Sbjct: 56 LSDEQRRAEYDQLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIF 98
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 66.6 bits (162), Expect = 1e-11
Identities = 87/331 (26%), Positives = 141/331 (42%), Gaps = 28/331 (8%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A K KE GN Y+ K ++KA+K YS+AI P+ YY NRAAC+ LG + ++D
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTA 185
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
A+ LDP +SK L R+ LG A +L A +D Q ++A+E + K F
Sbjct: 186 ALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKF- 242
Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
SKA E + + + + S K + L N L E E N L
Sbjct: 243 AESKAKEILETKPENLPSVTFVGNYLQSFRPKP-RPAGLEDSNELDE--ETGNGQLQLGL 299
Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
++P++ K D + + A D K E K A G K
Sbjct: 300 KSPES------------KADESYEEAARAFEKALDLGKLGE-----KEAIALNLRGTFKC 342
Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
+ GK+ EA ++++++D R + + RA++ ++G ++A D AL+ +
Sbjct: 343 LKGKHLEALADLSKSIELDPR---VTQSYIK-RASMNLELGDPDKAEEDFDKALKLNSED 398
Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
R + G++ + D +K +D
Sbjct: 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429
Score = 49.2 bits (117), Expect = 3e-06
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY 286
+R K KE+GN+ + +A +Y++A++ + NRA +G +
Sbjct: 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-----YYSNRAACHNALGDW 176
Query: 287 NEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEA 346
+ + D T ALE DP+Y KAL+RR + LG+Y + ++D +D R N +
Sbjct: 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR-NEQSAQAV 235
Query: 347 KRLLKR 352
+RLLK+
Sbjct: 236 ERLLKK 241
Score = 43.1 bits (101), Expect = 3e-04
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 1 ELSAEKHKEDGNTQYKL----------KQYSKALKCYSEAIS---VCPNVAAYYGNRAAC 47
E S E +E GN Q +L + Y +A + + +A+ + A R
Sbjct: 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340
Query: 48 YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
+ G + AL D ++ LDPR ++ I++ N+ LGD A + +L+ ++P
Sbjct: 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400
Query: 108 IAQESKALETMAKNFEGASKAFE 130
I L + F A K ++
Sbjct: 401 IYYHRAQLHFIKGEFAQAGKDYQ 423
Score = 29.6 bits (66), Expect = 4.6
Identities = 24/105 (22%), Positives = 43/105 (40%)
Query: 1 ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
E A G + ++ +AL S++I + P V Y RA+ + LG A +D
Sbjct: 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387
Query: 61 AKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN 105
A+ L+ + + + G+ A + + +LDPD
Sbjct: 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 62.7 bits (152), Expect = 2e-10
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 342 FLEEAKRLLKRSEVK--DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLE 399
+L R LK + D Y+ILG+ ++ S DIKK YR ++ HPD+ + E
Sbjct: 82 YLISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSE 141
Query: 400 QEKLFKEVGEAYGILSDPTKRSRY 423
E+ +K + +AYG+L+D +R Y
Sbjct: 142 YEEKYKTITKAYGLLTDKKRRENY 165
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 61.9 bits (150), Expect = 2e-10
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
KDYY++LGV+K AS +I++AYRK A +HPD + + K E+ EA +L
Sbjct: 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDK------MVEINEAADVLL 57
Query: 416 DPTKRSRYDR 425
D KR +YD+
Sbjct: 58 DKDKRKQYDQ 67
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat.
Length = 69
Score = 55.0 bits (133), Expect = 5e-10
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-MYTYALDDA 61
+AE K GN +KL Y +A++ Y +A+ + P+ A Y N A Y+ LG Y AL+D
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 62 KLAVSLDP 69
+ A+ LDP
Sbjct: 62 EKALELDP 69
Score = 50.0 bits (120), Expect = 3e-08
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG-QYKECVIDA 327
N++ L N LFK+G Y+EAI ALE DP+ +A + LG Y+E + D
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 328 EKIYKMD 334
EK ++D
Sbjct: 62 EKALELD 68
Score = 46.5 bits (111), Expect = 5e-07
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK-YNEAIA 291
+A K GN F G EA + Y +AL++D N++ +N A K+GK Y EA+
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPD----NAEAYYNLALAYLKLGKDYEEALE 59
Query: 292 DCTLALEKDP 301
D ALE DP
Sbjct: 60 DLEKALELDP 69
Score = 31.5 bits (72), Expect = 0.096
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-DKMDLAVNHFQLLLKLA 216
L L EA E L D N +A + L + A+ + L+L
Sbjct: 9 LGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELD 68
Query: 217 P 217
P
Sbjct: 69 P 69
Score = 31.1 bits (71), Expect = 0.16
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
N +A+ G L+ D A+ ++ L+L PD+A+A Y A +
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAY--YNLALAYLKLGK------ 52
Query: 244 VAGKNQEAFDIYTEALKID 262
+EA + +AL++D
Sbjct: 53 ---DYEEALEDLEKALELD 68
Score = 26.9 bits (60), Expect = 5.1
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPT-ARSN 94
+ A N LG Y A++ + A+ LDP ++ + LG A +
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 95 LKALQELDP 103
L+ ELDP
Sbjct: 61 LEKALELDP 69
>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1;
Provisional.
Length = 356
Score = 57.5 bits (139), Expect = 5e-09
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 20 YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI 79
++ A+ Y++AI + PN A Y +RA + LG +T A+ DA A+ LDP +K +R+
Sbjct: 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77
Query: 80 KCNIALGDAPTARSNLKALQELDPDNP 106
+ L + TA++ L+ L P +
Sbjct: 78 TACMKLEEYQTAKAALEKGASLAPGDS 104
Score = 42.1 bits (99), Expect = 4e-04
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296
++ E FV A D+YT+A+ +D N ++L +RA K+G + EA+AD A
Sbjct: 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKA 62
Query: 297 LEKDPNYLKALSRRCKCFHALGQYK 321
+E DP+ KA R+ L +Y+
Sbjct: 63 IELDPSLAKAYLRKGTACMKLEEYQ 87
Score = 28.6 bits (64), Expect = 6.8
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 16 KLKQYSKALKCYSEAISVCPNVA-AYYGNRAACYMMLGMYTYALDDAKLAVSL---DPRF 71
KL +++A+ ++AI + P++A AY AC M L Y A + SL D RF
Sbjct: 48 KLGNFTEAVADANKAIELDPSLAKAYLRKGTAC-MKLEEYQTAKAALEKGASLAPGDSRF 106
Query: 72 SKGLIRQIKCNIA--LGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
+K LI++ IA D + P + K
Sbjct: 107 TK-LIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKPK 156
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 52.4 bits (126), Expect = 4e-07
Identities = 56/331 (16%), Positives = 108/331 (32%), Gaps = 40/331 (12%)
Query: 18 KQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIR 77
++ +A E ++ P + + LG AL + A++L P L+
Sbjct: 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLA 232
Query: 78 QIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEA------ 131
I G+ A + AL + P++P ++ KN+E A + +
Sbjct: 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292
Query: 132 ----------------NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIA 175
+ A YL++ + S + + A L R+ EA
Sbjct: 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL 352
Query: 176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK 235
+ L D +P A+ + G + A + +L P++A A+ +KL +
Sbjct: 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412
Query: 236 KEEGNEKFVA-------GKNQEAFDIYT--------EALKIDARNI--NINSKLLHN-RA 277
E + I + +AL + ++ LHN
Sbjct: 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLG 472
Query: 278 TVLFKMGKYNEAIADCTLALEKDPNYLKALS 308
+ G +A AL +P++ A +
Sbjct: 473 AIYLGKGDLAKAREAFEKALSIEPDFFPAAA 503
Score = 45.8 bits (109), Expect = 5e-05
Identities = 65/288 (22%), Positives = 114/288 (39%), Gaps = 28/288 (9%)
Query: 35 PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSN 94
A R Y+ LG A + A+++DPR + + +A AR+
Sbjct: 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL 181
Query: 95 LKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTY 154
+ + DP N L N E A YR A+ A+ +
Sbjct: 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELA-----LAAYRKAI-----ALRPNNIA--V 229
Query: 155 KLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK 214
L A L +EA++ A+++L +P A +++ L + + A Q LK
Sbjct: 230 LLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALK 289
Query: 215 LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLH 274
AP++ L A G ++ G ++A+ + LK + +LL
Sbjct: 290 SAPEY------------LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA-RRLL- 335
Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
A++ ++G+ +EAIA + AL DP+ ALS + + ALG +++
Sbjct: 336 --ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381
Score = 42.4 bits (100), Expect = 4e-04
Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 21/216 (9%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
G Q +KA+ + + +++ P+ A A Y ++ Y A+ K A+ L P
Sbjct: 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD 667
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
++ I + +A +A+ K+LQ+ P LE
Sbjct: 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG----FELE--------GDLYLR 715
Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH-LNRLQEAQEIANSILATDKQNPDAV 189
DY A+ +A+ + +S+ +K L L E ++ A K +P+
Sbjct: 716 QKDYPAAIQAYRKALKRAPSSQN--AIK---LHRALLASGNTAEAVKTLEAWLKTHPNDA 770
Query: 190 FVRGLC--LYYDDK-MDLAVNHFQLLLKLAPDHAKA 222
+R LY K D A+ H+Q ++K APD+A
Sbjct: 771 VLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV 806
Score = 39.3 bits (92), Expect = 0.005
Identities = 53/268 (19%), Positives = 89/268 (33%), Gaps = 56/268 (20%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP- 69
G L + KA + ++A + P AA + G + A+ D + A LDP
Sbjct: 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429
Query: 70 ----------------RFSKGL---------------IRQIKCNIAL--GDAPTARSNLK 96
+F K L + + I L GD AR +
Sbjct: 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489
Query: 97 ALQELDPDNPAIAQESKALETMAKNFEGASKAFEA----------------------NDY 134
++PD A ++ N + A + FE +
Sbjct: 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE 549
Query: 135 RTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL 194
A+ +L++A + L A+ +L++A I N +P+A + G
Sbjct: 550 EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGR 609
Query: 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKA 222
++ AV+ F+ LL L PD A A
Sbjct: 610 AQLAAGDLNKAVSSFKKLLALQPDSALA 637
Score = 36.2 bits (84), Expect = 0.036
Identities = 46/242 (19%), Positives = 81/242 (33%), Gaps = 22/242 (9%)
Query: 96 KALQELDPDNPAIAQESKALETMAKN----FEGASKAFEANDYRTAMFYLDRAMDQGVAS 151
LQ+ AI Q AL+ + F DY A L +A+ G
Sbjct: 31 SYLQKNKY-KAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK 89
Query: 152 KTYKLMKAECLAHLNRLQEA-QEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQ 210
+ A + Q+ E+ L D+ + + +RGL +++LA ++
Sbjct: 90 NQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYE 149
Query: 211 LLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININS 270
L + P AK + L + + + E L D N+
Sbjct: 150 QALAIDPRSLYAKLGLAQLAL-AENRFDEARALID-----------EVLTADPGNV---- 193
Query: 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI 330
L + +L +G A+A A+ PN + L G+++E A+ +
Sbjct: 194 DALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL 253
Query: 331 YK 332
K
Sbjct: 254 LK 255
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 50.2 bits (121), Expect = 6e-07
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 352 RSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPD 387
++D YK+LGV+++ +IK+AYRK HHPD
Sbjct: 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 43.1 bits (101), Expect = 2e-04
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 357 DYYKILGVTK---NASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
D Y +LG++K A I KA++K+ +HPD+ ++ FK + +A +
Sbjct: 44 DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDK---TAAGGNKGCDEFFKLIQKAREV 100
Query: 414 LSDPTKRSRYD 424
L D R +YD
Sbjct: 101 LGDRKLRLQYD 111
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR
repeats [General function prediction only].
Length = 484
Score = 43.2 bits (102), Expect = 2e-04
Identities = 43/189 (22%), Positives = 61/189 (32%), Gaps = 23/189 (12%)
Query: 49 MMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL-----GDAPTARSNLKALQELDP 103
+ Y + A L + SK + AL G A L+ L P
Sbjct: 280 RIRAKY--EALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP 337
Query: 104 DNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA 163
DNP LE EAN + A+ L +A+ S +L A+ L
Sbjct: 338 DNPY------YLELAGD------ILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385
Query: 164 HLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD--KMDLAVNHFQLLLKLAPDHAK 221
+ QEA I N L D ++P+ L Y + A+ LA +
Sbjct: 386 KGGKPQEAIRILNRYLFNDPEDPN--GWDLLAQAYAELGNRAEALLARAEGYALAGRLEQ 443
Query: 222 AKETYKRAK 230
A RA
Sbjct: 444 AIIFLMRAS 452
Score = 35.8 bits (83), Expect = 0.044
Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 5/141 (3%)
Query: 13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS 72
Y QY +ALK I+ P+ Y + A++ K A++LDP
Sbjct: 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP 374
Query: 73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI----AQESKALETMAKNFEG-ASK 127
+ + + G A L DP++P AQ L A+ A
Sbjct: 375 LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434
Query: 128 AFEANDYRTAMFYLDRAMDQG 148
A A+ +L RA Q
Sbjct: 435 YALAGRLEQAIIFLMRASQQV 455
Score = 29.3 bits (66), Expect = 4.9
Identities = 38/167 (22%), Positives = 58/167 (34%), Gaps = 19/167 (11%)
Query: 148 GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVN 207
+ S ++L +A A L Q + + A + R L Y + D A+
Sbjct: 268 KLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALK 327
Query: 208 HFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN 267
Q L+ PD+ E LL+A K + + K A D + L++
Sbjct: 328 LLQPLIAAQPDNPYYLE-LAGDILLEANKAKEAIE--RLKKALALDPNSPLLQL------ 378
Query: 268 INSKLLHNRATVLFKMGKYNEAIA---DCTLALEKDPNYLKALSRRC 311
N A L K GK EAI +DPN L++
Sbjct: 379 -------NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAY 418
>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat.
Length = 34
Score = 38.2 bits (90), Expect = 2e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
+K L+N K+GKY+EA+ ALE +PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
Score = 33.9 bits (79), Expect = 0.006
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPN 36
GN KL +Y +AL+ Y +A+ + PN
Sbjct: 8 GNAYLKLGKYDEALEYYEKALELNPN 33
Score = 32.0 bits (74), Expect = 0.037
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF 71
A N Y+ LG Y AL+ + A+ L+P
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats. Repeats present in 4
or more copies in proteins. Contain a minimum of 34
amino acids each and self-associate via a "knobs and
holes" mechanism.
Length = 34
Score = 37.4 bits (88), Expect = 4e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
++ L+N K+G Y+EA+ ALE DPN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 32.4 bits (75), Expect = 0.024
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPN 36
GN KL Y +AL+ Y +A+ + PN
Sbjct: 8 GNAYLKLGDYDEALEYYEKALELDPN 33
Score = 30.5 bits (70), Expect = 0.12
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF 71
A N Y+ LG Y AL+ + A+ LDP
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response
chaperone LcrH/SycD. Genes in this family are found in
type III secretion operons. LcrH, from Yersinia is
believed to have a regulatory function in the
low-calcium response of the secretion system. The same
protein is also known as SycD (SYC = Specific Yop
Chaperone) for its chaperone role. In Pseudomonas, where
the homolog is known as PcrH, the chaperone role has
been demonstrated and the regulatory role appears to be
absent. ScyD/LcrH contains three central
tetratricopeptide-like repeats that are predicted to
fold into an all-alpha-helical array.
Length = 135
Score = 39.6 bits (93), Expect = 6e-04
Identities = 29/94 (30%), Positives = 45/94 (47%)
Query: 13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS 72
Y+ +Y +ALK + + P + Y+ AAC ML Y A+D LA +LDP
Sbjct: 26 NLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85
Query: 73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDNP 106
+ +C +ALG+ +A L E+ +NP
Sbjct: 86 RPYFHAAECLLALGEPESALKALDLAIEICGENP 119
Score = 38.8 bits (91), Expect = 0.001
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 95 LKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTA--MFYLDRAMDQGVASK 152
LK L LD E + + + A ++ Y A +F L A D +
Sbjct: 6 LKDLLGLDS------------EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRY 53
Query: 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL 212
L A C L +EA + A D +P F CL + + A+ L
Sbjct: 54 WLGL--AACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLA 111
Query: 213 LKLAPDHAKAKETYKRAKLLK 233
+++ ++ + E +RA+ +
Sbjct: 112 IEICGENPEYSELKERAEAML 132
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 40.0 bits (94), Expect = 8e-04
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 376 AYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY---DRGEDIMED 432
AYR HPDR A A+K + EAY L DP KR+RY RG D+ +
Sbjct: 28 AYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDVQAE 87
Query: 433 S 433
+
Sbjct: 88 N 88
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 40.5 bits (94), Expect = 0.002
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
+Y ILGV NA +I + Y K A ++P + + K FK++ EAY IL D
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHK------FKKINEAYQILGDI 628
Query: 418 TKRSRYDR 425
K+ Y++
Sbjct: 629 DKKKMYNK 636
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only].
Length = 291
Score = 37.5 bits (85), Expect = 0.012
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 13/183 (7%)
Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-DKMDLAVNHFQLLLKLA 216
L L + +EA E+ LA D A + L Y+ + A+ ++ L+L
Sbjct: 101 LGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELD 160
Query: 217 PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNR 276
P+ + E G G+ +EA ++ +ALK+ N + +++ L N
Sbjct: 161 PELNELAEALL---------ALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNL 208
Query: 277 ATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336
+ K+GKY EA+ ALE DP+ +AL LG+Y+E + EK ++D
Sbjct: 209 GLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268
Query: 337 REN 339
N
Sbjct: 269 LYN 271
Score = 28.3 bits (61), Expect = 9.3
Identities = 44/185 (23%), Positives = 71/185 (38%), Gaps = 15/185 (8%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN-VAAYYGNRAACYMMLGMYTYALDDA 61
AE G L +Y +AL+ +A+++ P+ A LG Y AL+
Sbjct: 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELY 153
Query: 62 KLAVSLDP---RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETM 118
+ A+ LDP ++ L+ ALG A L+ +L+PD+ A A + L
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL-- 211
Query: 119 AKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSI 178
+ Y A+ Y ++A++ + A L L R +EA E
Sbjct: 212 ---------YLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262
Query: 179 LATDK 183
L D
Sbjct: 263 LELDP 267
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 36.2 bits (84), Expect = 0.013
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 352 RSEVKDYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGE 409
R E K+ +LG+ ++A + ++KAY ++ L HPD+ + + ++L L+K+ E
Sbjct: 1 REESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNT--LYKKFRE 58
Query: 410 AYGILSDPT 418
+ L D
Sbjct: 59 SVKSLRDLD 67
>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat. This Pfam entry
includes outlying Tetratricopeptide-like repeats (TPR)
that are not matched by pfam00515.
Length = 34
Score = 32.5 bits (75), Expect = 0.024
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
+ L+N +K+G Y EA+ ALE DPN
Sbjct: 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
Score = 28.6 bits (65), Expect = 0.59
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPN 36
G YKL Y +AL+ Y +A+ + PN
Sbjct: 8 GLAYYKLGDYEEALEAYEKALELDPN 33
Score = 26.7 bits (60), Expect = 2.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF 71
A N Y LG Y AL+ + A+ LDP
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein
PilW. Members of this family are designated PilF in ref
(PMID:8973346) and PilW in ref (PMID:15612916). This
outer membrane protein is required both for pilus
stability and for pilus function such as adherence to
human cells. Members of this family contain copies of
the TPR (tetratricopeptide repeat) domain.
Length = 234
Score = 36.2 bits (84), Expect = 0.026
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-- 303
G+ ++A D + AL ++ N ++ L+N T L + GKY +A+ A+E DP Y
Sbjct: 79 GELEKAEDSFRRALTLNPNNGDV----LNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYPQ 133
Query: 304 -LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKD 357
++L C G + + + ++D R + LE A+ R + KD
Sbjct: 134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE-SLLELAELYYLRGQYKD 187
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 35.0 bits (81), Expect = 0.038
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 373 IKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
+K YR+ +HPDR A++A++ + + EV AY L DP R+ Y
Sbjct: 20 LKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEY 70
Score = 28.8 bits (65), Expect = 3.6
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 343 LEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKL--EQ 400
LEEA+ L R D K+LGV A D IKKAYRK HPD+ + +
Sbjct: 103 LEEAREQLDRE---DALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKL 159
Query: 401 EKLFKEVGEAY 411
++ +E+ EAY
Sbjct: 160 KEKLQEIQEAY 170
>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3;
Provisional.
Length = 172
Score = 34.3 bits (79), Expect = 0.057
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 211 LLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININS 270
L+LK+ P + KAKE + + +G G+ EA + Y EALK++ + N S
Sbjct: 21 LILKILPINKKAKEAFVYYR-------DGMSAQADGEYAEALENYEEALKLE-EDPNDRS 72
Query: 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ 319
+L+N + G++++A+ ALE +P AL+ +H G+
Sbjct: 73 YILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 35.0 bits (81), Expect = 0.095
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 348 RLLKRSEVKDYYKILGVTKNA--SSDDIKKAYRKRALVHHPDRHTNATQAQKL 398
+ L R E K+ +LG+ A + ++KAY ++ +HPD+ + + ++L
Sbjct: 3 KTLSREESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRL 55
>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat.
Length = 65
Score = 31.5 bits (72), Expect = 0.12
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 125 ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ 184
A A A DY A+ L+ A+ + + L+ E L RL EA + + LA D
Sbjct: 4 ARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPD 63
Query: 185 NP 186
+P
Sbjct: 64 DP 65
Score = 29.2 bits (66), Expect = 0.74
Identities = 13/65 (20%), Positives = 20/65 (30%)
Query: 156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL 215
L A EA + LA +A+ + G L ++ A + L
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 216 APDHA 220
PD
Sbjct: 61 DPDDP 65
Score = 26.5 bits (59), Expect = 6.2
Identities = 16/67 (23%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296
AG EA AL L L + G+ EA A A
Sbjct: 2 ALARAALRAGDYDEALAALEAALARYPLAAEA----LLLLGEALLRQGRLAEAAALLRAA 57
Query: 297 LEKDPNY 303
L DP+
Sbjct: 58 LAADPDD 64
Score = 26.5 bits (59), Expect = 6.3
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 276 RATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
A + G Y+EA+A AL + P +AL + G+ E
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAE 49
Score = 26.1 bits (58), Expect = 8.0
Identities = 11/59 (18%), Positives = 19/59 (32%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP 69
+ Y +AL A++ P A + G A + A++ DP
Sbjct: 4 ARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
>gnl|CDD|218234 pfam04733, Coatomer_E, Coatomer epsilon subunit. This family
represents the epsilon subunit of the coatomer complex,
which is involved in the regulation of intracellular
protein trafficking between the endoplasmic reticulum
and the Golgi complex.
Length = 288
Score = 33.6 bits (77), Expect = 0.20
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
K Q+A+ I+ E + + LL+ +A +G+Y EA + AL+KD +
Sbjct: 179 EKIQDAYYIFQEF----SEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPE 234
Query: 306 ALSRRCKCFHALG 318
L C LG
Sbjct: 235 TLINLVVCALHLG 247
Score = 29.4 bits (66), Expect = 4.0
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Query: 19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQ 78
+ A + E + +A C M LG Y A K A+ D + + LI
Sbjct: 180 KIQDAYYIFQEFSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLINL 239
Query: 79 IKCNIALG-DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF 129
+ C + LG A + NL L+ P +P + K L F+ A + F
Sbjct: 240 VVCALHLGKPAEVSNRNLSQLKLSHPTHPLV----KDLNEKEAEFDRAVQQF 287
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 30.8 bits (70), Expect = 0.21
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC-------PNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+L Y +AL+ +A+ + P A N A Y+ LG Y AL+ +
Sbjct: 12 ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71
Query: 64 AVSLDPR 70
A++L
Sbjct: 72 ALALREA 78
Score = 30.8 bits (70), Expect = 0.27
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 272 LLHNRATVLFKMGKYNEAIADCTLALE-------KDPNYLKALSRRCKCFHALGQYKECV 324
L+N A VL ++G Y+EA+ ALE P +AL+ + + ALG Y E
Sbjct: 7 ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE-- 64
Query: 325 IDAEKIYK 332
A + +
Sbjct: 65 --ALEYLE 70
Score = 27.3 bits (61), Expect = 4.8
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 246 GKNQEAFDIYTEALKIDARNININSKL---LHNRATVLFKMGKYNEAIADCTLALE 298
G EA ++ +AL++ + + L+N A + +G Y+EA+ AL
Sbjct: 19 GDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEKALA 74
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 32.6 bits (75), Expect = 0.24
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 385 HPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY---DRGEDI 429
HPD+ NA++ ++L + + +AY L P KR+ Y G D+
Sbjct: 32 HPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDL 79
>gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3.
Apc3, otherwise known as Cdc27, is one of the subunits
of the anaphase-promoting complex or cyclosome. The
anaphase-promoting complex is a multiprotein subunit E3
ubiquitin ligase complex that controls segregation of
chromosomes and exit from mitosis in eukaryotes. The
protein members of this family contain TPR repeats just
as those of Apc7 do, and it appears that these TPR units
bind the C-termini of the APC co-activators CDH1 and
CDC20.
Length = 80
Score = 30.7 bits (70), Expect = 0.25
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 277 ATVLFKMGKYNEAIADC-TLALEKDP--NYLKALSRRCKCFHALGQYKEC 323
A F G+Y A L L+ YL A +C LG+Y E
Sbjct: 29 AQCYFLQGQYKRAYELLRKLKLDNSSGCRYLLA-----QCLLKLGKYDEA 73
>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 250
Score = 32.8 bits (75), Expect = 0.31
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 12/139 (8%)
Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-- 303
G+N A + Y +AL + N ++ L+N L G+ EA+ AL DP Y
Sbjct: 83 GENDLADESYRKALSLAPNNGDV----LNNYGAFLCAQGRPEEAMQQFERALA-DPAYGE 137
Query: 304 -LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKD---YY 359
L C GQ+ + ++ ++D LE A+ K + Y
Sbjct: 138 PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP-PALLELARLHYKAGDYAPARLYL 196
Query: 360 KILGVTKNASSDDIKKAYR 378
+ A ++ + R
Sbjct: 197 ERYQQRGGAQAESLLLGIR 215
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat shock
cognate protein) of a pair of proteins Hsc66-Hsc20,
related to the DnaK-DnaJ heat shock proteins, which also
serve as molecular chaperones. Hsc20, unlike DnaJ,
appears not to have chaperone activity on its own, but
to act solely as a regulatory subunit for Hsc66 (i.e.,
to be a co-chaperone). The gene for Hsc20 in E. coli,
hscB, is not induced by heat shock [Protein fate,
Protein folding and stabilization].
Length = 155
Score = 32.2 bits (73), Expect = 0.31
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 373 IKKAYRKRALVHHPDRHTNAT-QAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
++K YR+ +HPD A Q +Q + +AY L DP +R+ Y
Sbjct: 8 LRKRYRQLQAQYHPDASGMAQEQLAASQQST---TLNQAYHTLKDPLRRAEY 56
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 31.7 bits (72), Expect = 0.41
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 371 DDIKKAYRKRALVHHPDRHTNATQ-AQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
D + YR+ A HPDR +A + Q+L E+ + EAY L P +R+RY
Sbjct: 21 DQLATRYRELAREVHPDRFADAPEREQRLALERS-ASLNEAYQTLKSPPRRARY 73
>gnl|CDD|237080 PRK12370, PRK12370, invasion protein regulator; Provisional.
Length = 553
Score = 32.9 bits (75), Expect = 0.42
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 22/117 (18%)
Query: 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYM---MLGMY--TYALDD 60
KH+ + T Y L+Q ALK ++ +++ PN A Y A CY+ +G++ A+
Sbjct: 266 KHELNQYTPYSLQQ---ALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIK 322
Query: 61 AKL----AVSLDPRFSK-----GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI 108
AK A LD + GLI I +G ++NL L P + I
Sbjct: 323 AKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL-----LSPISADI 374
>gnl|CDD|185304 PRK15406, PRK15406, oligopeptide ABC transporter permease OppC;
Provisional.
Length = 302
Score = 32.5 bits (74), Expect = 0.45
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 243 FVAGKNQEAFDIYTEALKIDARNI--NINSKLLHNRATV 279
++ KN EA + ++E L+++ R++ + + +HNRA V
Sbjct: 2 MLSKKNSEALENFSEKLEVEGRSLWQDARRRFMHNRAAV 40
>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat.
Length = 34
Score = 27.9 bits (63), Expect = 0.79
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 26 CYSEAISVCPNVAAYYGNRAACYMMLGMYTYAL 58
Y +A+ + PN A Y N A + LG Y AL
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
Score = 26.4 bits (59), Expect = 3.6
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 255 YTEALKIDARNININSKLLHNRATVLFKMGKYNEAIA 291
Y +AL++D N ++ +N A +L +G+Y+EA+
Sbjct: 2 YEKALELDPNN----AEAYYNLALLLLNLGQYDEALQ 34
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 30.2 bits (68), Expect = 0.82
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 335 NSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQ 394
S N L+ + + +SE YKIL ++ AS + I++A+++ L +HPD +
Sbjct: 47 GSLFLKNDLKGFENPMSKSEA---YKILNISPTASKERIREAHKQLMLRNHPDNGGSTYI 103
Query: 395 AQKLEQEK 402
A K+ + K
Sbjct: 104 ASKVNEAK 111
>gnl|CDD|185272 PRK15374, PRK15374, pathogenicity island 1 effector protein SipB;
Provisional.
Length = 593
Score = 31.9 bits (72), Expect = 0.85
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 98 LQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLM 157
LQ LDP +P AQ A+E K EA + + A LD+A D V + T
Sbjct: 171 LQSLDPADPGYAQAEAAVEQAGK---------EATEAKEA---LDKATDATVKAGTDAKA 218
Query: 158 KAE 160
KAE
Sbjct: 219 KAE 221
>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional.
Length = 296
Score = 31.4 bits (72), Expect = 1.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
A E +S+L D A RG+ LYY + +LA + + P+
Sbjct: 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164
>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat.
Length = 34
Score = 27.4 bits (62), Expect = 1.3
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
+ + + ++G Y EA ALE DPN
Sbjct: 2 RAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function
unknown].
Length = 531
Score = 30.6 bits (69), Expect = 2.2
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 22/102 (21%)
Query: 57 ALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIA------- 109
A DDA A L P + + G+ L+ + +P +P IA
Sbjct: 248 ARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIALLYVRAR 306
Query: 110 ---------QESKALETMAKN-----FEGASKAFEANDYRTA 137
+ +K LE++ N A A +A ++ A
Sbjct: 307 SGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAA 348
>gnl|CDD|226572 COG4087, COG4087, Soluble P-type ATPase [General function
prediction only].
Length = 152
Score = 29.1 bits (65), Expect = 2.9
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 3/136 (2%)
Query: 282 KMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHN 341
K GK IA + ++ L + A G K ++ + + R
Sbjct: 17 KAGKVLYTIATGGKLFSEVSETIQELHDMVDIYIASGDRKGSLVQLAEFVGIPVERVFAG 76
Query: 342 FLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQE 401
E K + R K Y K++ V A+ + + + L +
Sbjct: 77 ADPEMKAKIIRELKKRYEKVVMVGNGANDILALREADLGICTIQQE---GVPERLLLTAD 133
Query: 402 KLFKEVGEAYGILSDP 417
+ KE+ E +L D
Sbjct: 134 VVLKEIAEILDLLKDT 149
>gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Exonuclease-1 (EXO1) is involved
in multiple, eukaryotic DNA metabolic pathways,
including DNA replication processes (5' flap DNA
endonuclease activity and double stranded DNA
5'-exonuclease activity), DNA repair processes (DNA
mismatch repair (MMR) and post-replication repair
(PRR)), recombination, and telomere integrity. EXO1
functions in the MMS2 error-free branch of the PRR
pathway in the maintenance and repair of stalled
replication forks. Studies also suggest that EXO1 plays
both structural and catalytic roles during MMR-mediated
mutation avoidance. EXO1 belongs to the FEN1-EXO1-like
family of structure-specific, 5' nucleases. These
nucleases contain a PIN (PilT N terminus) domain with a
helical arch/clamp region (I domain) of variable length
(approximately 43 residues in EXO1 PIN domains) and a
H3TH (helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this group
also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+). EXO1 nucleases also have
C-terminal Mlh1- and Msh2-binding domains which allow
interaction with MMR and PRR proteins, respectively.
Length = 210
Score = 29.4 bits (67), Expect = 3.0
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 220 AKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV 279
+K +R + + E+ E G EA + + A ++I ++ H
Sbjct: 84 SKKGTEEERRERREENLEKALELLREGNRSEARECFQRA-------VDITPEMAHELIKA 136
Query: 280 LFKMG 284
L K G
Sbjct: 137 LRKEG 141
>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion].
Length = 257
Score = 29.3 bits (66), Expect = 4.0
Identities = 18/108 (16%), Positives = 32/108 (29%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
E G Q + + +A+ +A + P + A LG + A +
Sbjct: 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYR 158
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQ 110
A+ L P + GD A + L + + Q
Sbjct: 159 QALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ 206
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 28.7 bits (64), Expect = 4.5
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 357 DYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGIL 414
+Y+++LG+ + + D ++K Y + +HPD+ + ++ + E+ AY L
Sbjct: 3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLI--IASELNNAYSTL 60
Query: 415 SDPTKRSRY 423
D KR+ Y
Sbjct: 61 KDALKRAEY 69
>gnl|CDD|214813 smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha
toxin). This domain conveys a zinc dependent
phospholipase C activity (EC 3.1.4.3). It is found in a
monomeric phospholipase C of Bacillus cereus as well as
in the alpha toxin of Clostridium perfringens and
Clostridium bifermentans, which is involved in
haemolysis and cell rupture. It is also found in a
lecithinase of Listeria monocytogenes, which is involved
in breaking the 2-membrane vacuoles that surround the
bacterium. Structure information: PDB 1ca1.
Length = 241
Score = 28.9 bits (65), Expect = 5.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 102 DPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM 145
D + S A +T K F+ A ++ +Y+ A FYL RA
Sbjct: 98 DTGKNYLPGFSNAKDTGRKYFKLALNEWKKGNYKKAFFYLGRAC 141
>gnl|CDD|184428 PRK13971, PRK13971, hydroxyproline-2-epimerase; Provisional.
Length = 333
Score = 29.1 bits (66), Expect = 5.5
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 103 PDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMD 146
P++P I S L T G + A D R A+FY D+A+D
Sbjct: 213 PEDPRIRGVSHVLWT------GKPISPGA-DARNAVFYGDKAID 249
>gnl|CDD|205399 pfam13218, DUF4026, Protein of unknown function (DUF4026). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 450 amino acids in length.
The family is found in association with pfam10077.
Length = 323
Score = 28.9 bits (65), Expect = 5.9
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 173 EIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
I+ +LA +FV L+ D + + + L LAPD
Sbjct: 79 PISPELLAEANAATQEIFVE--TLFQGDPLASYLQQLKFLQILAPD 122
>gnl|CDD|218846 pfam05994, FragX_IP, Cytoplasmic Fragile-X interacting family.
CYFIP1/2 (Cytoplasmic fragile X mental retardation
interacting protein) like proteins for a highly
conserved protein family. The function of CYFIPs is
unclear, but CYFIP interaction with fragile X mental
retardation interacting protein (FMRP) involves the
domain of FMRP which also mediating homo- and
heteromerization.
Length = 815
Score = 28.9 bits (65), Expect = 6.7
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIA 175
E + K+ + A FEAND T++ L+R +D + T+KL+ +E L L+ ++
Sbjct: 384 ELIVKSLDAAISRFEANDL-TSIVELERLVD--ILRLTHKLL-SEYLIPLDPF---DDMF 436
Query: 176 NSILATDKQNPDAVFVR-GLCLYYDDKMDLAVNHF 209
D +P++ R L ++++ D N+F
Sbjct: 437 REANHND--SPNSPQSRILLHVFWELNYDFLPNYF 469
>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General
function prediction only].
Length = 297
Score = 28.2 bits (63), Expect = 8.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 171 AQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQ 210
A E +S+L D A RG+ LYY + LA +
Sbjct: 118 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 28.4 bits (64), Expect = 9.6
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 130 EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD 187
E+ D A+ +L+ Q V M+A+ L L R +EA+ ++L +NP+
Sbjct: 16 ESGDLEEALEHLEEKEKQIVDRLAVMEMRADLLLKLGRKEEAEATYRALL---DRNPE 70
>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal
drug target closely related to some forms of glutathione
reductase.
Length = 486
Score = 28.4 bits (63), Expect = 9.7
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 333 MDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAY 377
MD RE+ F E RS VK +K L KN + DI K+Y
Sbjct: 69 MDTLRESAGFGWE----FDRSSVKANWKALIAAKNKAVLDINKSY 109
>gnl|CDD|148235 pfam06504, RepC, Replication protein C (RepC). This family
consists of several bacterial replication protein C
(RepC) sequences.
Length = 283
Score = 28.3 bits (63), Expect = 9.8
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 42 GNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQEL 101
G + + +L Y D +L V+L+PR ++ + +G P R + ++ L
Sbjct: 152 GRKRQGFRLLSEYASDEADGRLFVALNPRIAEAI---------MGGRPHTRIEMAEVRAL 202
Query: 102 DPDNPA 107
D PA
Sbjct: 203 QTD-PA 207
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.377
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,437,626
Number of extensions: 2271593
Number of successful extensions: 2657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2538
Number of HSP's successfully gapped: 191
Length of query: 470
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 370
Effective length of database: 6,502,202
Effective search space: 2405814740
Effective search space used: 2405814740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)