RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16214
(470 letters)
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 355 bits (913), Expect = e-119
Identities = 115/428 (26%), Positives = 188/428 (43%), Gaps = 6/428 (1%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
EKH E G Q + AL + A+ P+ Y RA ++ +G AL D
Sbjct: 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 84
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL---ETMA 119
+ L F+ +++ + G A + K + + +P + L + M
Sbjct: 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144
Query: 120 KNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL 179
+ A AF + DY A+ +LD+ ++ V + ++AEC ++A +
Sbjct: 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 204
Query: 180 ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239
N +A + Y +L+++ + LKL DH + YK+ K L E
Sbjct: 205 KLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 264
Query: 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK 299
E G+ +A Y +K + + K K EAI C+ L+
Sbjct: 265 EELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324
Query: 300 DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKDY 358
+P+ + AL R + + Y E + D E + + N ++ LE+A+RLLK+S+ +DY
Sbjct: 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPT 418
YKILGV +NA +I KAYRK AL HPD N + +K + EK F ++ A +LSDP
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN--EEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 419 KRSRYDRG 426
R ++D G
Sbjct: 443 MRKKFDDG 450
Score = 83.2 bits (206), Expect = 2e-17
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 6/147 (4%)
Query: 214 KLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLL 273
D ++ ++ E G + AG+ +A + A+ D N
Sbjct: 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD----NYIAY 63
Query: 274 HNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
+ RATV MGK A+ D T ++ ++ A +R G+ E D +K+ K
Sbjct: 64 YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123
Query: 334 DNSRENHNFLEEAKRLLKRSEVKDYYK 360
+ S + E +L+K E++
Sbjct: 124 NPS--ENEEKEAQSQLIKSDEMQRLRS 148
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 275 bits (706), Expect = 3e-89
Identities = 81/355 (22%), Positives = 144/355 (40%), Gaps = 4/355 (1%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
EKH E G Q + AL + A+ P+ Y RA ++ +G AL D
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL---ETMAK 120
++L F+ +++ + G A + K + + +P + L + M +
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA 180
A AF+ DY A+ +LD+ ++ V + ++AEC ++A +
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182
Query: 181 TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN 240
N +A + Y +L+++ + LKL DH + YK+ K L E
Sbjct: 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242
Query: 241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300
E G+ +A Y +K + + K K EAI C+ L+ +
Sbjct: 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302
Query: 301 PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE 354
P+ + AL R + + Y E + D E + + N ++ LE+A+RLLK+S+
Sbjct: 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357
Score = 107 bits (269), Expect = 8e-26
Identities = 45/241 (18%), Positives = 93/241 (38%), Gaps = 6/241 (2%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
++ + + Y+ A+ + + VC A RA C++ G A+ D K
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKN 121
A L ++ + LGD + S + + L +LD D+ K ++ + K
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKL 237
Query: 122 FEGASKAFEANDYRTAMFYLDRAM--DQGVASKTYKL--MKAECLAHLNRLQEAQEIANS 177
E A + Y A + M + VA T + C + + EA I +
Sbjct: 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297
Query: 178 ILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237
+L + N +A+ R ++ D A+ ++ + + + +E ++A+ L + +
Sbjct: 298 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357
Query: 238 E 238
+
Sbjct: 358 K 358
Score = 68.1 bits (167), Expect = 1e-12
Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 34/196 (17%)
Query: 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV 244
+ + G L ++ A++ F + PD+ A Y+RA + A
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAY--YRRATVFLAM--------- 50
Query: 245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL 304
GK++ A T+ + + R +L K GK +EA D L+ +P+
Sbjct: 51 -GKSKAALPDLTKVIALKMDFTAA----RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105
Query: 305 KALS---------------RRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKR 348
+ + Y + +KI ++ E E
Sbjct: 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165
Query: 349 LLKRSE--VKDYYKIL 362
+ D
Sbjct: 166 KEGEPRKAISDLKAAS 181
Score = 55.0 bits (133), Expect = 2e-08
Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 9/147 (6%)
Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328
+ + L G+ +A++ A++ DP+ A RR F A+G+ K + D
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 329 KIYKMD-NSRENHNFLEEAKRLLKRSE--VKDYYKILGVTKNASSDDIKKAYRKRALVHH 385
K+ + + + + D+ K+L S+ ++ + +
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL-----KSNPSEQEEKEAESQLVK 116
Query: 386 PDRHTNA-TQAQKLEQEKLFKEVGEAY 411
D +QA +
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFL 143
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 141 bits (356), Expect = 8e-37
Identities = 56/328 (17%), Positives = 109/328 (33%), Gaps = 19/328 (5%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A + K GN + K +++A+K Y AI + PN +Y N +ACY+ G ++
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
A+ + P SK L+R+ N +LG+ A +L L + A + + +
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMK 144
Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
++ ++ R + ++ + + A + + L
Sbjct: 145 VLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY 204
Query: 184 QNPDAVFVRGLCLYYD--DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE 241
D ++ L D ++ + L + A A G
Sbjct: 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA------------LALCYTGIF 252
Query: 242 KFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301
F+ +A + E++ ++ A L E A++ +P
Sbjct: 253 HFLKNNLLDAQVLLQESIN-----LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307
Query: 302 NYLKALSRRCKCFHALGQYKECVIDAEK 329
Y R + + L YK D +K
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQK 335
Score = 103 bits (258), Expect = 9e-24
Identities = 48/353 (13%), Positives = 105/353 (29%), Gaps = 39/353 (11%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
K ++ ++A+ + P+ + RA+ LG +T A+ D +SL+
Sbjct: 66 SACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGD 124
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
F I+ + A L D + S ++A F E
Sbjct: 125 FDGA---SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT--SLASFFGIFDSHLE 179
Query: 131 ANDYRTAMFYLDRAMDQGVASKT--------YKLMKAECLAHLNRLQEAQEIANSILATD 182
+ T+ Y A + Y + +
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239
Query: 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA----------------KAKETY 226
+ A+ G+ + + + A Q + L P + + +
Sbjct: 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFF 299
Query: 227 KRAKLLKAKKEE-----GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF 281
++A L + G F+ + A + + +A ++ N+ A +L+
Sbjct: 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP----YIQLACLLY 355
Query: 282 KMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
K GK+ E+ A K P + + + G + + + +++
Sbjct: 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408
Score = 91.7 bits (228), Expect = 5e-20
Identities = 50/395 (12%), Positives = 98/395 (24%), Gaps = 81/395 (20%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+ Y L + + N A + + A +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
+++L P +AL ++ + QE KA++ +
Sbjct: 269 SINLHPTP------NSYIFLAL-----TLADKENSQE------FFKFFQKAVDLNPEY-- 309
Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
Y R + L + A+E + +
Sbjct: 310 -------------PPTYYHRG---------------QMYFILQDYKNAKEDFQKAQSLNP 341
Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
+N LY K + F P + A++L +
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVP--TFFAEILTDR-------- 391
Query: 244 VAGKNQEAFDIYTEALKID------------ARNININSKLLHNRATVLFKMGKYNEAIA 291
G A Y A +++ ++ K+N AI
Sbjct: 392 --GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449
Query: 292 DCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK--IYKMDNSRENHNF-LEEAKR 348
T A E DP +A + + + E + E I + EA +
Sbjct: 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAK 509
Query: 349 LLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALV 383
+ KR ++ I + + YR + ++
Sbjct: 510 IQKR--LRADPIISAKMELTLA-----RYRAKGML 537
Score = 85.2 bits (211), Expect = 8e-18
Identities = 44/317 (13%), Positives = 88/317 (27%), Gaps = 28/317 (8%)
Query: 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVC-------PNVAAYYGNRAACYMMLGMY 54
L D +K+ Y +S N A + +
Sbjct: 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259
Query: 55 TYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA 114
A + +++L P I ++ + +L+P+ P
Sbjct: 260 LDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP------PT 312
Query: 115 LETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEI 174
+ + F DY+ A +A + + A L + E++
Sbjct: 313 YYHRGQMY------FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366
Query: 175 ANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK----ETYKRAK 230
N P+ L D A+ + + +L K +A
Sbjct: 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426
Query: 231 LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAI 290
+L + + + K A + T+A ++D R+ A + +M K +EAI
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA----KIGLAQLKLQMEKIDEAI 482
Query: 291 ADCTLALEKDPNYLKAL 307
+ + L
Sbjct: 483 ELFEDSAILARTMDEKL 499
Score = 82.8 bits (205), Expect = 4e-17
Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
Query: 201 KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK 260
L L+P +A K GN F A EA Y A++
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAY--------AVQLKNRGNHFFTAKNFNEAIKYYQYAIE 53
Query: 261 IDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY 320
+D N + G + I T ALE P++ KAL RR +LG +
Sbjct: 54 LDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109
Query: 321 KECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKK 375
+ + D + + + + +R L + +K + L + S +
Sbjct: 110 TDAMFDLSVLSLNGDF-DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163
Score = 68.2 bits (167), Expect = 2e-12
Identities = 18/89 (20%), Positives = 31/89 (34%)
Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
G + + + + L NR F +NEAI A+E DPN
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 306 ALSRRCKCFHALGQYKECVIDAEKIYKMD 334
S C+ + G ++ + K ++
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIK 89
Score = 46.3 bits (110), Expect = 2e-05
Identities = 15/125 (12%), Positives = 27/125 (21%), Gaps = 18/125 (14%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAAC--------------- 47
E + A+K Y A + +
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436
Query: 48 -YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDN 105
+ + A+ A LDPR + I + + + A + L
Sbjct: 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA-ILARTM 495
Query: 106 PAIAQ 110
Q
Sbjct: 496 DEKLQ 500
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 139 bits (352), Expect = 2e-36
Identities = 62/369 (16%), Positives = 117/369 (31%), Gaps = 19/369 (5%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A K+ GN ++ K+Y A+K Y+ A+ + + +Y N +ACY+ +G ++ +
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTK 64
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
A+ L P +SK L+R+ N LG A +L L N A + +
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMS 124
Query: 124 GASKAFEAND--YRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
+ F D T + + + + + AN +
Sbjct: 125 KLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESN 184
Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK-----K 236
+ + L + D A F K A + + + LK K +
Sbjct: 185 EADKELMNGLSNLYKRSPESYDKADESFT---KAARLFEEQLDKNNEDEKLKEKLAISLE 241
Query: 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296
G KF+ A + +A+++ A ++ E A
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFP-----RVNSYIYMALIMADRNDSTEYYNYFDKA 296
Query: 297 LEKDPNYLKALSRRCKCFHALGQYKECVIDAEK-IYKMDNSRENHNFLEEAKRLLKRSE- 354
L+ D N R + L Y + D +K + + L + +
Sbjct: 297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD 356
Query: 355 -VKDYYKIL 362
+ +
Sbjct: 357 CETLFSEAK 365
Score = 120 bits (302), Expect = 2e-29
Identities = 49/371 (13%), Positives = 119/371 (32%), Gaps = 36/371 (9%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD---AKLAVSL 67
+ K ++ ++A+ + P+ + RA+ LG + A+ D L
Sbjct: 46 SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105
Query: 68 DPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKNFEGAS 126
+ + ++ + A+ ++ A + A+E K + + +
Sbjct: 106 NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165
Query: 127 KAFEANDYRTAMFYLDRAMDQ------------GVASKTYKLMKAECLAHLNRLQEAQEI 174
F D + + + ++Y +E +
Sbjct: 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225
Query: 175 ANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA 234
N ++ ++ G+ + + A + ++L P A ++
Sbjct: 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR---VNSYIYMALIMAD 282
Query: 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294
+ + E ++ + +ALK+D+ N S + ++R + F + Y++A D
Sbjct: 283 R----------NDSTEYYNYFDKALKLDSNN----SSVYYHRGQMNFILQNYDQAGKDFD 328
Query: 295 LALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK-IYKMDNSRENHNFLEEAKRLLKRS 353
A E DP + + + ++ +C + K + E NF E
Sbjct: 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388
Query: 354 E--VKDYYKIL 362
+ +K Y +
Sbjct: 389 DKALKQYDLAI 399
Score = 97.1 bits (242), Expect = 9e-22
Identities = 52/408 (12%), Positives = 109/408 (26%), Gaps = 58/408 (14%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYG-------------NRAACYM 49
S E E + + + + A + ++ A +
Sbjct: 109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168
Query: 50 MLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIA 109
+ + + D GL K + D KA + + +
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT-KAARLFEE---QLD 224
Query: 110 QESKALETMAKNFEG----ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL 165
+ ++ + K F ND A + +A++ +Y M A +A
Sbjct: 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM-ALIMADR 283
Query: 166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA----- 220
N E + L D N + RG + D A F +L P++
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343
Query: 221 ------------KAKETYKRAKLLKAKKEE-----GNEKFVAGKNQEAFDIYTEALKIDA 263
+ + AK + E +A Y A++++
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 264 RNININSKLLHNRATVLFK---------MGKYNEAIADCTLALEKDPNYLKALSRRCKCF 314
+ + A ++ K + + EA A + DP +A +
Sbjct: 404 KL----DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459
Query: 315 HALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKDYYKI 361
E + E+ + E + A+ + ++ +
Sbjct: 460 LQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSDPVL 507
Score = 95.6 bits (238), Expect = 3e-21
Identities = 45/313 (14%), Positives = 92/313 (29%), Gaps = 27/313 (8%)
Query: 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVC-------PNVAAYYGNRAACYMMLGMY 54
LS + + + ++KA + + E + +A + +
Sbjct: 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253
Query: 55 TYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA 114
A +D K A+ L PR + I D+ + +LD +N
Sbjct: 254 LGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFDKALKLDSNNS------SV 306
Query: 115 LETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEI 174
+ F +Y A D+A + + + A N+ + + +
Sbjct: 307 YYHRGQMN------FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL 360
Query: 175 ANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA 234
+ + P+ L + D A+ + L ++L Y L
Sbjct: 361 FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI---YVGIAPLVG 417
Query: 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294
K EA ++ +A K+D R+ A + + +EAI
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQA----KIGLAQMKLQQEDIDEAITLFE 473
Query: 295 LALEKDPNYLKAL 307
+ + + L
Sbjct: 474 ESADLARTMEEKL 486
Score = 83.3 bits (206), Expect = 3e-17
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 6/141 (4%)
Query: 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
K++GN+ F K +A Y AL++ + N + +G + + T
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELKE-----DPVFYSNLSACYVSVGDLKKVVEMSTK 64
Query: 296 ALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEV 355
ALE P+Y K L RR LG++ + + D + + + +R L + +
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI-EPMLERNLNKQAM 123
Query: 356 KDYYKILGVTKNASSDDIKKA 376
+ G A++ + +
Sbjct: 124 SKLKEKFGDIDTATATPTELS 144
Score = 79.4 bits (196), Expect = 5e-16
Identities = 37/245 (15%), Positives = 74/245 (30%), Gaps = 13/245 (5%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
++ + +A+ + N ++ Y +R +L Y A D A LDP
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
I+ + + P+ P + + T +F+ A K ++
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396
Query: 131 -----ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN 185
N + A K + EA + D ++
Sbjct: 397 LAIELENKLDGIYVGI--------APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448
Query: 186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA 245
A + +D A+ F+ LA + + A+ K ++ ++ +A
Sbjct: 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSDPVLA 508
Query: 246 GKNQE 250
K QE
Sbjct: 509 KKIQE 513
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 119 bits (300), Expect = 4e-32
Identities = 43/140 (30%), Positives = 67/140 (47%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
AE+ K N +K K Y A+K YS+AI + P+ A YYGNR+ Y+ Y YAL DA
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
A+ LD ++ KG R+ N+ALG A + + + ++ P + + + + K
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132
Query: 124 GASKAFEANDYRTAMFYLDR 143
R+ + LD
Sbjct: 133 FERAIAGDEHKRSVVDSLDI 152
Score = 109 bits (274), Expect = 2e-28
Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 22/180 (12%)
Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRA 277
D A KRA+ LK + N+ F A + A Y++A++++ N + NR+
Sbjct: 2 DEPPADGALKRAEELK---TQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRS 54
Query: 278 TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NS 336
+ Y A+ D T A+E D Y+K RR ALG+++ + D E + K+ +
Sbjct: 55 LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114
Query: 337 RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQ 396
++ +E +++K + A I KR++V D + + +
Sbjct: 115 KDAKMKYQECNKIVK--------------QKAFERAIAGDEHKRSVVDSLDIESMTIEDE 160
Score = 40.0 bits (94), Expect = 4e-04
Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 4/141 (2%)
Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
F+A DY A+ + +A++ ++ Y ++ A A + DK+
Sbjct: 22 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 81
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246
+ R K A+ ++ ++K+ P AK Y+ K K++ E+ A
Sbjct: 82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN--KIVKQKAFER--AI 137
Query: 247 KNQEAFDIYTEALKIDARNIN 267
E ++L I++ I
Sbjct: 138 AGDEHKRSVVDSLDIESMTIE 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 118 bits (298), Expect = 4e-32
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN 275
P + + A ++ ++EGNE F G A YT+AL +DA + + L N
Sbjct: 12 GPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD-QAVLHRN 70
Query: 276 RATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDN 335
RA K+ Y++A + + A+EKD +KAL RR + LG+ + V+D ++ ++
Sbjct: 71 RAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130
Query: 336 SRENHNFLEEAKRLLKRS 353
N F E + + S
Sbjct: 131 K--NKVFQEALRNISGPS 146
Score = 108 bits (273), Expect = 2e-28
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCP---NVAAYYGNRAACYMMLGMYTYALD 59
S E+ +++GN +K Y AL Y++A+ + + A + NRAAC++ L Y A
Sbjct: 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET 86
Query: 60 DAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116
+A A+ D K L R+ + LG A +L+ L+P N + + +
Sbjct: 87 EASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143
Score = 40.4 bits (95), Expect = 2e-04
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 3/141 (2%)
Query: 91 ARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA 150
S + P P + ++ + + ++ F+ DY A+ +A+
Sbjct: 1 GSSGSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT 60
Query: 151 SK---TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVN 207
+ +A C L +A+ A+ + D + A++ R L ++D AV
Sbjct: 61 PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120
Query: 208 HFQLLLKLAPDHAKAKETYKR 228
Q + L P + +E +
Sbjct: 121 DLQRCVSLEPKNKVFQEALRN 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 118 bits (298), Expect = 9e-32
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
++K K +GN K+YSKA+ Y++A+S+ P Y NRAA Y G + A +DA+L
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
A +DP++SK R + D A+ + E + + + LET + E
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG-GSDAMKRGLETTKRKIE 129
Query: 124 GASKAFEAN 132
A++ E
Sbjct: 130 EANRGAEPP 138
Score = 99.8 bits (249), Expect = 6e-25
Identities = 42/162 (25%), Positives = 59/162 (36%), Gaps = 15/162 (9%)
Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
K EGN + +A D+YT+AL I N L NRA G++ +A D
Sbjct: 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDA 68
Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNF---LEEAKRLL 350
LA DP Y KA SR + YK EK + + + + LE KR +
Sbjct: 69 ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128
Query: 351 KRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNA 392
+ + V A + R PD + A
Sbjct: 129 EEANRGAEPPADDVDDAAGAS--------RGAGGMPDLSSLA 162
Score = 35.1 bits (81), Expect = 0.018
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 2/129 (1%)
Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
A +Y A+ +A+ A+ Y +A + + ++A E A D +
Sbjct: 20 AAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS 79
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD--HAKAKETYKRAKLLKAKKEEGNEKFV 244
A GL + A ++ ++ + K + K + G E
Sbjct: 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPPA 139
Query: 245 AGKNQEAFD 253
+ A
Sbjct: 140 DDVDDAAGA 148
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 117 bits (294), Expect = 2e-31
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 350 LKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRH-TNATQAQKLEQEKLFKEVG 408
+++ KD+Y ILG +A+ D+K+ Y+K L++HPD+ T+ E + F E+
Sbjct: 4 VEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEID 63
Query: 409 EAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFE----QHMFQTYFDPGCR 458
+A+ IL + + YD + +G E +++ CR
Sbjct: 64 QAWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLS-CR 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 115 bits (290), Expect = 4e-31
Identities = 36/113 (31%), Positives = 56/113 (49%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A++ K GN +K Y A++ Y+EA+ P A Y NRAAC L + ALDD
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116
+ LD +F KG IR+ C +A+ + A+ + ++DP N + +
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125
Score = 107 bits (270), Expect = 2e-28
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 220 AKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV 279
+ A+ Y +L + +K +GNE F G A Y EA+K D N + L NRA
Sbjct: 1 SNARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAAC 56
Query: 280 LFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRE 338
L K+ ++ A+ DC + D ++K R+ C A+ ++ + E ++D ++ E
Sbjct: 57 LTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116
Query: 339 NHNFLEEAKR 348
+ R
Sbjct: 117 AREGVRNCLR 126
Score = 38.4 bits (90), Expect = 8e-04
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 105 NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH 164
NP +AQE K +G ++ F+ DY TAM + + A+ + + +A CL
Sbjct: 9 NPELAQEEKN--------KG-NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK 59
Query: 165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE 224
L Q A + ++ + D + + CL + A ++ L++ P + +A+E
Sbjct: 60 LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119
Query: 225 TYKRAK 230
+
Sbjct: 120 GVRNCL 125
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 114 bits (288), Expect = 7e-31
Identities = 33/113 (29%), Positives = 51/113 (45%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+ KE GN + AL+CYSEAI + P+ Y NR+A Y G Y A +D
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116
V L P + KG R+ L A+ + + + +NP + + + +E
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116
Score = 98.4 bits (246), Expect = 5e-25
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
KE+GN+ G +A Y+EA+K+D N L NR+ K G Y +A D
Sbjct: 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDG 61
Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKR 348
++ P++ K SR+ L +++E E+ K + N+ + L+ +
Sbjct: 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117
Score = 37.9 bits (89), Expect = 9e-04
Identities = 14/104 (13%), Positives = 34/104 (32%)
Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
KA + A+ A+ + ++ A Q+A E +
Sbjct: 13 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK 230
+ L + ++ + A ++ LK ++ + KE + +
Sbjct: 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 113 bits (286), Expect = 2e-30
Identities = 37/118 (31%), Positives = 51/118 (43%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A K GN ++ Y +A+K Y+EAI P A Y NRAACY L + AL D +
Sbjct: 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN 121
+ L+P F KG R+ A+ D A + +LD A + N
Sbjct: 76 CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
Score = 99.2 bits (248), Expect = 4e-25
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 219 HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRAT 278
H ++ L K +GNE F G +A YTEA+K + ++ +KL NRA
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAA 58
Query: 279 VLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE 338
K+ ++ A+ DC ++ +P ++K +R+ A+ Y + + +K +D+S
Sbjct: 59 CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-- 116
Query: 339 NHNFLEEAKRLLKRSEVKDY 358
+EA +R + Y
Sbjct: 117 ----CKEAADGYQRCMMAQY 132
Score = 35.3 bits (82), Expect = 0.010
Identities = 19/104 (18%), Positives = 35/104 (33%)
Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
+ F+ DY AM + A+ + +A C L Q A + + +
Sbjct: 25 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI 84
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK 230
+ L A++ +Q L L +A + Y+R
Sbjct: 85 KGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 111 bits (280), Expect = 9e-30
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
AE+ + +G + + A+K Y+E I P A Y NRAA L + A+ D
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
A+ DP F + IR+ IA+ + +A L A + D ++ ++ +
Sbjct: 63 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA-EVNNGSSAREIDQLYY 119
Score = 107 bits (270), Expect = 2e-28
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
+ EG E F A YTE +K + ++ NRA L K+ + EAIADC
Sbjct: 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADC 61
Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRS 353
A+EKDPN+++A R+ A+ +Y + + D N + E +L ++
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121
Query: 354 EVKDY 358
+ +
Sbjct: 122 SQQRF 126
Score = 36.5 bits (85), Expect = 0.004
Identities = 14/112 (12%), Positives = 30/112 (26%)
Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
+ F +D+ A+ + + +A LA L EA N + D
Sbjct: 13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 72
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238
A + + A+ + + +L ++
Sbjct: 73 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 112 bits (281), Expect = 1e-29
Identities = 34/109 (31%), Positives = 53/109 (48%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
SA++ KE GN + ++Y +A CY AI+ P VA YY NRA CY+ + AL D +
Sbjct: 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE 111
A+ LD + K +C + + A +NL+ L + +
Sbjct: 68 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116
Score = 111 bits (279), Expect = 2e-29
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK 285
+ ++ + KE+GN FV K EA Y A+ + + NRA KM +
Sbjct: 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQ 58
Query: 286 YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEE 345
+A+ADC ALE D +KA +C + Y E + + ++ Y + + NF ++
Sbjct: 59 PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDD 117
Query: 346 AKRLLKRSEVKDYYKI 361
L+ ++ K + I
Sbjct: 118 IPSALRIAKKKRWNSI 133
Score = 43.5 bits (103), Expect = 2e-05
Identities = 12/70 (17%), Positives = 25/70 (35%)
Query: 16 KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGL 75
K++Q +AL A+ + + C + + Y A+ + + A SL
Sbjct: 55 KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114
Query: 76 IRQIKCNIAL 85
I + +
Sbjct: 115 GDDIPSALRI 124
Score = 37.3 bits (87), Expect = 0.002
Identities = 25/112 (22%), Positives = 40/112 (35%)
Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
+ F Y A RA+ + Y +A C + + ++A L D Q+
Sbjct: 18 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 77
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238
A F G C + D A+ + Q LA + + L AKK+
Sbjct: 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 117 bits (296), Expect = 1e-29
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 346 AKRLLKRS---EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEK 402
+ L +S E+KDYY ILGV IK AYR+ A +HPD K
Sbjct: 15 TENLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAK----- 69
Query: 403 LFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGA 441
FK++ EA+ +L D +R+ YD+ D G G
Sbjct: 70 -FKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQT 107
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 110 bits (276), Expect = 2e-29
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
YY+IL V ++AS+DDIKKAYR++AL HPD++ + K EK FKEV EAY +LS
Sbjct: 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPD----NKEFAEKKFKEVAEAYEVLS 57
Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMFQTYFDP 455
D KR YDR G + + +G G + +
Sbjct: 58 DKHKREIYDRYGREGLTGTGTGPSRAEAGSGGPGLEHHHHH 98
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 112 bits (282), Expect = 5e-29
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGIL 414
++++Y +LGV+K ASS +I++A++K AL HPD++ N A F ++ AY +L
Sbjct: 1 IQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNA-----HGDFLKINRAYEVL 55
Query: 415 SDPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGSNVRFQYY 469
D R +YD+ GE +ED+ G + + + DP
Sbjct: 56 KDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAV 111
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 109 bits (275), Expect = 5e-29
Identities = 41/117 (35%), Positives = 58/117 (49%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
AE+ K +GN Q K++ + A+ Y +AI + P A Y+ NRAA Y LG Y A+ D +
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
A+ +DP +SK R +L A + K ELDPDN K E +
Sbjct: 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
Score = 101 bits (255), Expect = 4e-26
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
K EGNE+ + A Y +A++++ N + NRA K+G Y A+ DC
Sbjct: 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKR 352
A+ DP Y KA R +L ++ E V +K ++D ++ + L+ A+ L+
Sbjct: 70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129
Query: 353 S 353
+
Sbjct: 130 A 130
Score = 38.0 bits (89), Expect = 0.001
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
+ + ++ A+ + +A++ A+ Y +A + L A + + D
Sbjct: 21 EQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS 80
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK 230
A GL L +K AV +++ L+L PD+ K K A+
Sbjct: 81 KAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAE 124
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 113 bits (285), Expect = 7e-29
Identities = 54/307 (17%), Positives = 96/307 (31%), Gaps = 64/307 (20%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A+K K +GN YK +Q+ +A++ Y++A + ++ NRAA G Y A+
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLN-NRAAAEYEKGEYETAISTLND 63
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
AV K +G+A +LK E +
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--------------- 108
Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
+R A+ L L ++ + A + +
Sbjct: 109 ----------HR----------------------TADILTKLRNAEKELKKAEAEAYVNP 136
Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
+ + + G + AV + ++K AP+ A+ RA L
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGY--SNRAAALAKL-------- 186
Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
EA +A++ D + + +AT + +Y A+ A KD
Sbjct: 187 --MSFPEAIADCNKAIEKDPNFV----RAYIRKATAQIAVKEYASALETLDAARTKDAEV 240
Query: 304 LKALSRR 310
S R
Sbjct: 241 NNGSSAR 247
Score = 98.8 bits (247), Expect = 1e-23
Identities = 39/219 (17%), Positives = 70/219 (31%), Gaps = 26/219 (11%)
Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP 217
+A + A N + ++ V + + ++
Sbjct: 44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103
Query: 218 DHA----------------KAKETYKRAKLLK-----AKKEEGNEKFVAGKNQEAFDIYT 256
K + + + + EG E F A YT
Sbjct: 104 KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163
Query: 257 EALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA 316
E +K + ++ NRA L K+ + EAIADC A+EKDPN+++A R+ A
Sbjct: 164 EMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 219
Query: 317 LGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE 354
+ +Y + + D + E + K S+
Sbjct: 220 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
Score = 51.0 bits (123), Expect = 2e-07
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK-IY 331
+K +++EAI A E + L+ R + G+Y+ + +
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 332 KMDNSRENHNFLEEAKRLLKRSE--VKDYYK 360
+ R ++ + ++ + + + D K
Sbjct: 67 QGREMRADYKVISKSFARIGNAYHKLGDLKK 97
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 111 bits (278), Expect = 7e-28
Identities = 34/109 (31%), Positives = 53/109 (48%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
SA++ KE GN + ++Y +A CY AI+ P VA YY NRA CY+ + AL D +
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE 111
A+ LD + K +C + + A +NL+ L + +
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
Score = 106 bits (265), Expect = 4e-26
Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 7/188 (3%)
Query: 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIAD 292
+ KE+GN FV K EA Y A+ + + NRA KM + +A+AD
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALAD 60
Query: 293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKR 352
C ALE D +KA +C + Y E + + ++ Y + + NF ++ L+
Sbjct: 61 CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI 119
Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
++ K + I + + +Y R + +R Q E +
Sbjct: 120 AKKKRWNSI--EERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC 177
Query: 413 ILSDPTKR 420
I + K
Sbjct: 178 IEAKHDKY 185
Score = 48.0 bits (114), Expect = 3e-06
Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 1/179 (0%)
Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
+ F Y A RA+ + Y +A C + + ++A L D Q+
Sbjct: 13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246
A F G C + D A+ + Q LA + + L AKK+ N
Sbjct: 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 132
Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
+QE+ ++++ ++ A + G A +K +
Sbjct: 133 IHQES-ELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMD 190
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 113 bits (285), Expect = 7e-28
Identities = 60/322 (18%), Positives = 99/322 (30%), Gaps = 66/322 (20%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
+ ++ ++ ++ + AI P +A Y N Y G A++ + A+ L P
Sbjct: 40 SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
F G I L A L A +++ A+ AL+ +
Sbjct: 100 FIDGY-------INLAAA------LVAAGDME---GAVQAYVSALQYNPDLYC------- 136
Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
D L L RL+EA+ + T A
Sbjct: 137 --------VRSDLGN---------------LLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
G ++ LA++HF+ + L P+ A +LK
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY--INLGNVLKEA----------RIFDR 221
Query: 251 AFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR 310
A Y AL + + + N A V ++ G + AI A+E P++ A
Sbjct: 222 AVAAYLRALSLSPNHAVV----HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
Query: 311 CKCFHALGQYKECVIDAEKIYK 332
G E AE Y
Sbjct: 278 ANALKEKGSVAE----AEDCYN 295
Score = 104 bits (263), Expect = 6e-25
Identities = 40/322 (12%), Positives = 86/322 (26%), Gaps = 66/322 (20%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
+ +Y+ + A + + P+ ++ + + + LA+ +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
++ G A + + L PD
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF------------------------- 100
Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
Y++ A L ++ A + S L +
Sbjct: 101 ------IDGYINLAA---------------ALVAAGDMEGAVQAYVSALQYNPDLYCVRS 139
Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
G L +++ A + ++ P+ A A + A+ G+
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAW--SNLGCVFNAQ----------GEIWL 187
Query: 251 AFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR 310
A + +A+ +D N VL + ++ A+A AL PN+
Sbjct: 188 AIHHFEKAVTLDPN----FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 311 CKCFHALGQYKECVIDAEKIYK 332
++ G A Y+
Sbjct: 244 ACVYYEQGLIDL----AIDTYR 261
Score = 103 bits (258), Expect = 3e-24
Identities = 62/308 (20%), Positives = 98/308 (31%), Gaps = 62/308 (20%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
GN L + +A CY +AI PN A + N + G A+ + AV+LDP
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
F I LG+ LK + D A+A +AL
Sbjct: 202 FLDAYIN-------LGNV------LKEARIFDR---AVAAYLRALSLSP----------- 234
Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
++ L A + A + + PDA
Sbjct: 235 --NHAVVHGNL-----------------ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275
Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
L + A + + L+L P HA + A + + + G +E
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSL--NNLANIKREQ----------GNIEE 323
Query: 251 AFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR 310
A +Y +AL++ N A+VL + GK EA+ A+ P + A S
Sbjct: 324 AVRLYRKALEVFPEFAAA----HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Query: 311 CKCFHALG 318
+
Sbjct: 380 GNTLKEMQ 387
Score = 89.9 bits (224), Expect = 8e-20
Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 20/177 (11%)
Query: 156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL 215
+ A + A+ + + N + + + ++D + + L +K
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN 275
P A+A + K + G+ QEA + Y AL++ I+ N
Sbjct: 63 NPLLAEA--YSNLGNVYKER----------GQLQEAIEHYRHALRLKPDFIDG----YIN 106
Query: 276 RATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
A L G A+ AL+ +P+ S ALG+ +E A+ Y
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEE----AKACYL 159
Score = 82.6 bits (205), Expect = 3e-17
Identities = 44/292 (15%), Positives = 68/292 (23%), Gaps = 66/292 (22%)
Query: 41 YGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE 100
A G + A +P + L+ + + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 101 LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAE 160
+P A Y +
Sbjct: 62 QNPLL-------------------------------AEAYSNLGN--------------- 75
Query: 161 CLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220
+LQEA E L D L M+ AV + L+ PD
Sbjct: 76 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135
Query: 221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVL 280
+ LLKA G+ +EA Y +A++ + N V
Sbjct: 136 CVR--SDLGNLLKAL----------GRLEEAKACYLKAIETQPN----FAVAWSNLGCVF 179
Query: 281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
G+ AI A+ DPN+L A + A Y
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR----AVAAYL 227
Score = 62.6 bits (153), Expect = 7e-11
Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
+ ++ AG + A + + + N + L +++ F+ + + + TLA++
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGV----LLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE--V 355
++P +A S + GQ +E + ++ + + + L A E V
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 356 KDYYKIL 362
+ Y L
Sbjct: 122 QAYVSAL 128
Score = 50.6 bits (122), Expect = 6e-07
Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 3/93 (3%)
Query: 273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
A ++ G + A C ++P+ L + + K
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 333 MD-NSRENHNFLEEAKRLLKRSE--VKDYYKIL 362
+ E ++ L + + + ++ Y L
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 105 bits (263), Expect = 8e-28
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 345 EAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRH-TNATQAQKLEQEKL 403
+ L+++ KD+Y ILG +A+ D+K+ Y+K L++HPD+ + E +
Sbjct: 5 SSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQK 64
Query: 404 FKEVGEAYGILSDPTKRSRYDR 425
F E+ +A+ IL + + +YD
Sbjct: 65 FIEIDQAWKILGNEETKKKYDL 86
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 108 bits (270), Expect = 9e-28
Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 348 RLLKRSEVKDYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFK 405
++L R E +LG+ ++A + ++KAY K+ HPD+ + E+ K
Sbjct: 3 KVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMK 53
Query: 406 EVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGS 462
++ Y + D K + + + + + + + + P C + S
Sbjct: 54 KMNTLYKKMEDGVKYAHQPDFGGFWDATEVFASSLNPGVDAIYCKQW--PECVKKMS 108
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 104 bits (262), Expect = 2e-27
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 345 EAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLF 404
+A + + +DYY +LG + +S + I ++ RAL HPD+H +A + F
Sbjct: 9 DAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKA-----VETF 63
Query: 405 KEVGEAYGILSDPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQ 446
+++ +A IL++ R+RYD M A + +
Sbjct: 64 QKLQKAKEILTNEESRARYDHWRRSQMSMPFQQWEALNDSVKT 106
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 104 bits (261), Expect = 3e-27
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+ Y +LG+ KNA+SDDIKK+YRK AL +HPD++ + +A FKE+ A+ IL+
Sbjct: 17 ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEA-----ADKFKEINNAHAILT 71
Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGAN 442
D TKR+ YD+ G + + G N
Sbjct: 72 DATKRNIYDKYGSLGLYVAEQFGEENVN 99
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 104 bits (261), Expect = 3e-27
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
EK KE GN+ +K Y +A+ CY + I+ P Y N+A + LG YT A+ +
Sbjct: 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDN 105
+ IR K L A A ++ + E+D
Sbjct: 63 QGLRYTSTAEHVAIRS-KLQYRLELAQGAVGSVQIPVVEVDELP 105
Score = 83.1 bits (206), Expect = 1e-19
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
+KE+GN F G +EA Y + + +N N+A L K+G+Y +AI C
Sbjct: 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMC 61
Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
L R K + L + V +
Sbjct: 62 QQGLRYTSTAEHVAIRS-KLQYRLELAQGAVGSVQI 96
Score = 44.6 bits (106), Expect = 4e-06
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 280 LFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336
LFK G Y EA+ + P S + LG+Y + + ++ + ++
Sbjct: 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 103 bits (258), Expect = 4e-27
Identities = 42/87 (48%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+YY++LGV +AS +DIKKAYRK AL HPD++ + K E EK FK V EAY +LS
Sbjct: 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPD----NKEEAEKKFKLVSEAYEVLS 64
Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGA 441
D KRS YDR G D G +
Sbjct: 65 DSKKRSLYDRAGCDSWRAGGGASGPSS 91
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 103 bits (258), Expect = 7e-27
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
+DYY+ILGV+K A +I+KAY++ A+ +HPDR+ +A E FKE+ EAY +L+
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA-----EAKFKEIKEAYEVLT 57
Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGAN 442
D KR+ YD+ G E GMGG
Sbjct: 58 DSQKRAAYDQYGHAAFEQGGMGGGGFGG 85
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 109 bits (275), Expect = 4e-26
Identities = 38/365 (10%), Positives = 81/365 (22%), Gaps = 31/365 (8%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+ L+ + L +A + P + L L
Sbjct: 72 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 131
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
A L P + AL L L P+ +A S
Sbjct: 132 AHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ-VVAIASNGG-------- 182
Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
+ + L +A L +Q +
Sbjct: 183 ---GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 239
Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
Q A+ G + + + L P A + +A
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA--IASNSGGKQAL-------- 289
Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
Q + +A + + + + + + + A P
Sbjct: 290 --ETVQRLLPVLCQAHGLTPQQVVA----IASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343
Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE--VKDYYK 360
+ A++ AL + + + + + K+ L+ + + +
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 403
Query: 361 ILGVT 365
G+T
Sbjct: 404 AHGLT 408
Score = 108 bits (271), Expect = 1e-25
Identities = 36/327 (11%), Positives = 70/327 (21%), Gaps = 30/327 (9%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+G + L+ + L +A + P + L L
Sbjct: 174 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 233
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETMAKNF 122
A L P+ + AL L L P AIA S +
Sbjct: 234 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ------ 287
Query: 123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
+ + L +A L +Q +
Sbjct: 288 -------ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340
Query: 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK 242
Q A+ + + + L P+ A +A
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAI--ASNGGGKQAL------- 391
Query: 243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
Q + +A + + + + + + A P
Sbjct: 392 ---ETVQRLLPVLCQAHGLTPEQVVA----IASHDGGKQALETVQRLLPVLCQAHGLTPQ 444
Query: 303 YLKALSRRCKCFHALGQYKECVIDAEK 329
+ A++ AL + +
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDP 471
Score = 92.5 bits (230), Expect = 2e-20
Identities = 33/299 (11%), Positives = 65/299 (21%), Gaps = 28/299 (9%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+G + L+ + L +A + P + L L
Sbjct: 208 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 267
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
A L P+ + AL L L P +A
Sbjct: 268 AHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQV-----------VAIASN 316
Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
G K + + L +A L +Q +
Sbjct: 317 GGGKQ-ALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375
Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
+ A+ G + + + L P+ A +A
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAI--ASHDGGKQAL-------- 425
Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
Q + +A + + + + + + ++ AL N
Sbjct: 426 --ETVQRLLPVLCQAHGLTPQQVVA----IASNGGGRPALESIVAQLSRPDPALAALTN 478
Score = 91.0 bits (226), Expect = 8e-20
Identities = 36/366 (9%), Positives = 82/366 (22%), Gaps = 41/366 (11%)
Query: 7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVS 66
+ + + AL +++ P + L L A
Sbjct: 43 KRGGVTAVEAVHAWRNALTG--APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHG 100
Query: 67 LDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMA-KNFEGA 125
L P+ + AL L L P+ +A S A + +
Sbjct: 101 LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-VVAIASHDGGKQALETVQAL 159
Query: 126 SKAFE---ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
+ L +Q +
Sbjct: 160 LPVLCQAHGLTPEQVVAIASNGG---------------GKQALETVQRLLPVLCQAHGLT 204
Query: 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK 242
Q A+ G + + + L P A +A
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA--IASNGGGKQA-------- 254
Query: 243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
Q + +A + + + + + + + + A P
Sbjct: 255 --LETVQRLLPVLCQAHGLTPQQVVA----IASNSGGKQALETVQRLLPVLCQAHGLTPQ 308
Query: 303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE--VKDYY 359
+ A++ AL + + + + + + K+ L+ + +
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 368
Query: 360 KILGVT 365
+ G+T
Sbjct: 369 QAHGLT 374
Score = 88.7 bits (220), Expect = 5e-19
Identities = 33/365 (9%), Positives = 81/365 (22%), Gaps = 31/365 (8%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
H + + + A + + + R + ++ +
Sbjct: 4 HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA 63
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
++L P + AL L L P +A S
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ-VVAIASHDGG------- 115
Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
+ + L +A L +Q +
Sbjct: 116 ----KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP 171
Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
+ A+ G + + + L P A +A
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA--IASNGGGKQA--------- 220
Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
Q + +A + + + + + + + A P
Sbjct: 221 -LETVQRLLPVLCQAHGLTPQQVVA----IASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275
Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE--VKDYYK 360
+ A++ AL + + + + + K+ L+ + + +
Sbjct: 276 VVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 335
Query: 361 ILGVT 365
G+T
Sbjct: 336 AHGLT 340
Score = 55.1 bits (133), Expect = 2e-08
Identities = 21/217 (9%), Positives = 39/217 (17%), Gaps = 46/217 (21%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
+G + L+ + L +A + P + L L
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 368
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
A L P + AL L L P+
Sbjct: 369 QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ----------------- 411
Query: 123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
+ L +Q +
Sbjct: 412 --------------VVAIASHDG---------------GKQALETVQRLLPVLCQAHGLT 442
Query: 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH 219
Q A+ G + + ++ L +
Sbjct: 443 PQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 99.7 bits (249), Expect = 7e-26
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
Y +LGV+ +A+ ++KK YRK AL +HPD+ T EK FKE+ EA+ IL+
Sbjct: 8 TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-------TEK-FKEISEAFEILN 59
Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAG 440
DP KR YD+ G + G G
Sbjct: 60 DPQKREIYDQYGLEAARSGGPSFGPG 85
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 100 bits (250), Expect = 8e-26
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
Y +LGV A+ IK AY ++ ++HPDR++ + +A + F + +AY +L
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEA-----AERFTRISQAYVVLG 71
Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGAN 442
T R +YDRG ED G ++
Sbjct: 72 SATLRRKYDRGLLSDEDLRGPGSGPSS 98
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 99.3 bits (248), Expect = 9e-26
Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
DYY++L V + ASS+ IKKAYRK AL HPD++ K E E+ FK+V EAY +LS
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE----NKEEAERRFKQVAEAYEVLS 64
Query: 416 DPTKRSRYDR 425
D KR YDR
Sbjct: 65 DAKKRDIYDR 74
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 98.4 bits (246), Expect = 2e-25
Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 7/80 (8%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
KDYY+ LG+ + AS ++IK+AYR++AL +HPD++ E+ FKE+ EAY +LS
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP------GAEEKFKEIAEAYDVLS 56
Query: 416 DPTKRSRYDR-GEDIMEDSG 434
DP KR +DR GE+ ++ SG
Sbjct: 57 DPRKREIFDRYGEEGLKGSG 76
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 98.1 bits (245), Expect = 3e-25
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
YY ILGV K+AS IKKA+ K A+ +HPD++ + K F+E+ EAY LS
Sbjct: 7 GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAK------FREIAEAYETLS 60
Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPG 456
D +R YD GH+ F Q+ G
Sbjct: 61 DANRRKEYDT----------LGHSA---FTSGKGQSGPSSG 88
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 94.2 bits (235), Expect = 5e-24
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
DYY+ILGV +NAS +IKKAY + A +HPD + + +A ++ F ++ EAY +LS
Sbjct: 7 GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKA-----KEKFSQLAEAYEVLS 61
Query: 416 DPTKRSRYDR 425
D KR +YD
Sbjct: 62 DEVKRKQYDA 71
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 93.5 bits (233), Expect = 9e-24
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 9/74 (12%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
YY +LGV +AS +++KKAYRK AL HPD++ + E+ FK++ +AY +LS
Sbjct: 8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-------AEQ-FKQISQAYEVLS 59
Query: 416 DPTKRSRYDR-GED 428
D KR YD+ GE+
Sbjct: 60 DEKKRQIYDQGGEE 73
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 93.5 bits (233), Expect = 1e-23
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 6/70 (8%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
DYY+ILGV++ AS +D+KKAYR+ AL HPD++ + FK +G AY +LS
Sbjct: 7 GDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEA------FKAIGTAYAVLS 60
Query: 416 DPTKRSRYDR 425
+P KR +YD+
Sbjct: 61 NPEKRKQYDQ 70
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 93.6 bits (233), Expect = 1e-23
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
D Y++LGV++ AS DIKKAY+K A HPD++ + + F ++ +AY ILS
Sbjct: 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDR------FIQISKAYEILS 70
Query: 416 DPTKRSRYDR 425
+ KR+ YD
Sbjct: 71 NEEKRTNYDH 80
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 97.7 bits (244), Expect = 3e-23
Identities = 49/327 (14%), Positives = 90/327 (27%), Gaps = 64/327 (19%)
Query: 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDA 61
++ + + +K Y++A++ +++ + N Y RA CY L Y A D
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 62 KL---AVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALET 117
+ V+ S K L + D+ AI Q A++
Sbjct: 61 ETYFSKVNATKAKSA-----------------DFEYYGKILMKKGQDSLAIQQYQAAVDR 103
Query: 118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANS 177
+ Y + A +
Sbjct: 104 DTTRLD---------------MYGQIGS---------------YFYNKGNFPLAIQYMEK 133
Query: 178 ILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237
+ +P + G YY+ + A + F +L+L P+ RA+ A+
Sbjct: 134 QIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG--YLWRARANAAQDP 191
Query: 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLL----HNRATVLFKMGKYNEAIADC 293
+ K A Y + +++ A L A +A A
Sbjct: 192 DT-------KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244
Query: 294 TLALEKDPNYLKALSRRCKCFHALGQY 320
L DP KA+ +
Sbjct: 245 KNILALDPTNKKAIDGLKMKLEHHHHH 271
Score = 75.8 bits (187), Expect = 1e-15
Identities = 32/200 (16%), Positives = 60/200 (30%), Gaps = 30/200 (15%)
Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV---NHFQLLLK 214
A+ L N EA E+ N + A +P R +C Y K DLA + +
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 215 LAPDHA-----------------KAKETYKRAKLLKAKKEE-----GNEKFVAGKNQEAF 252
+ A + Y+ A + + G+ + G A
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128
Query: 253 DIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK 312
+ ++ + + + + +Y +A + LE PN R +
Sbjct: 129 QYMEKQIRPTTTDPKV----FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRAR 184
Query: 313 CFHALGQYKECVIDAEKIYK 332
A + A+ Y+
Sbjct: 185 ANAAQDPDTK-QGLAKPYYE 203
Score = 65.0 bits (159), Expect = 7e-12
Identities = 30/184 (16%), Positives = 53/184 (28%), Gaps = 22/184 (11%)
Query: 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV 244
N D F L+ ++ A+ F L + +RA
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIY--NRRAVCYYEL--------- 50
Query: 245 AGKNQEA---FDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301
K A + Y + S +L K G+ + AI A+++D
Sbjct: 51 -AKYDLAQKDIETYFSKVNAT----KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT 105
Query: 302 NYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE--VKDY 358
L + F+ G + + EK + + L +A K +
Sbjct: 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165
Query: 359 YKIL 362
K+L
Sbjct: 166 VKVL 169
Score = 58.1 bits (141), Expect = 1e-09
Identities = 28/242 (11%), Positives = 61/242 (25%), Gaps = 40/242 (16%)
Query: 129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANS---ILATDKQN 185
F+ N+Y A+ ++ + S +A C L + AQ+ + + K
Sbjct: 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73
Query: 186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-----------------KAKETYKR 228
G L + LA+ +Q + A + ++
Sbjct: 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133
Query: 229 AKLLKAKKEE-----GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM 283
+ G + + +A + + L++ RA
Sbjct: 134 QIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY----LWRARANAAQ 189
Query: 284 G---KYNEAIADCTLALEKDP--------NYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
K A +E ++A + + + I
Sbjct: 190 DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249
Query: 333 MD 334
+D
Sbjct: 250 LD 251
Score = 51.1 bits (123), Expect = 2e-07
Identities = 18/65 (27%), Positives = 25/65 (38%)
Query: 268 INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDA 327
+N + A LFK Y EAI K N +RR C++ L +Y D
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 328 EKIYK 332
E +
Sbjct: 61 ETYFS 65
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 92.5 bits (230), Expect = 5e-23
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 356 KDYYKILGVTKNASS-DDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGIL 414
++ Y +L V + + KAYR A HHPDR + +KL E+ F+ + AY L
Sbjct: 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDR--VKNKEEKLLAEERFRVIATAYETL 72
Query: 415 SDPTKRSRYDR 425
D ++ YD
Sbjct: 73 KDDEAKTNYDY 83
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 100 bits (251), Expect = 6e-23
Identities = 42/344 (12%), Positives = 92/344 (26%), Gaps = 40/344 (11%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
G T K A K + + + Y R Y L + A + K A+ +D +
Sbjct: 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCY-LRGQVYTNLSNFDRAKECYKEALMVDAK 232
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
+ + + ++ D ++ A + +
Sbjct: 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS---------LYMLKLNKTS 283
Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
D +++ S L KA+ L +R + I IL D N D
Sbjct: 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343
Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-----------------KAKETYKRAKLLK 233
+ L+ + + L+ P+ A +A+ + ++ +
Sbjct: 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403
Query: 234 AKKEE-----GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNE 288
+ + + G++ +A YT A ++ ++G
Sbjct: 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP----YLFLGMQHMQLGNILL 459
Query: 289 AIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
A + L+ + A ++
Sbjct: 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQT----AINHFQ 499
Score = 91.4 bits (227), Expect = 8e-20
Identities = 34/324 (10%), Positives = 74/324 (22%), Gaps = 31/324 (9%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
+ + + + Y +I+ + +A + + L + +DP
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
+ G+ L + P+ + +
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA------VTWLAVGIYY------LC 385
Query: 131 ANDYRTAMFYLDRA--MDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDA 188
N A Y ++ MD + A A +A + +
Sbjct: 386 VNKISEARRYFSKSSTMDPQFGP-AWIGF-AHSFAIEGEHDQAISAYTTAARLFQGTHLP 443
Query: 189 VFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248
G+ + LA + Q L + + K
Sbjct: 444 YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL--NELGVVAFNK----------SDM 491
Query: 249 QEAFDIYTEALKIDARNININSK---LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
Q A + + AL + + + N K+ Y+ AI L N
Sbjct: 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551
Query: 306 ALSRRCKCFHALGQYKECVIDAEK 329
+ + + +
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHE 575
Score = 91.4 bits (227), Expect = 8e-20
Identities = 51/298 (17%), Positives = 85/298 (28%), Gaps = 25/298 (8%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
+T + ++ L ++ + + P Y A G + V P
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371
Query: 71 FSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMA-KNFEGASKA 128
+ + + + AR K+ +DP A A + A A
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKSST-MDPQF-GPAWIGFAHSFAIEGEHDQAISA 429
Query: 129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDA 188
Y TA + QG L L + A E S A + +P
Sbjct: 430 -----YTTAA-----RLFQGTHLPYLFL--GMQHMQLGNILLANEYLQSSYALFQYDPLL 477
Query: 189 VFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248
+ G+ + M A+NHFQ L L ++ + G+
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL-----GHAYRKLKMY 532
Query: 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306
A D + L + + N+ A V AI +L PN + A
Sbjct: 533 DAAIDALNQGLLLSTNDANV----HTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586
Score = 86.0 bits (213), Expect = 4e-18
Identities = 39/321 (12%), Positives = 97/321 (30%), Gaps = 28/321 (8%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
Y++A ++ + A Y A C + L + AL+
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNLLGETNPFRKD 182
Query: 71 FSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKNFEG----- 124
+ + + + + + L + A +AL AK +E
Sbjct: 183 EKNA-NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241
Query: 125 ---ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
A E D + Y + + ++ ++K +H + L+ A++ S +
Sbjct: 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY-LSSING 300
Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE 241
+++ D + + L+ + + +L++ P + +
Sbjct: 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH------------LAS 348
Query: 242 KFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301
+G+ + + I + + + + K +EA + + DP
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPE----KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404
Query: 302 NYLKALSRRCKCFHALGQYKE 322
+ A F G++ +
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQ 425
Score = 74.1 bits (182), Expect = 3e-14
Identities = 40/239 (16%), Positives = 66/239 (27%), Gaps = 40/239 (16%)
Query: 129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ---- 184
DY A L + D S + + A CL L Q A + K
Sbjct: 128 CCTGDYARAKCLLTKE-DLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNA 186
Query: 185 ------------NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL 232
++RG D A ++ L + +A + LL
Sbjct: 187 NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLL 246
Query: 233 KAKKEE----------------------GNEKFVAGKNQEAFDIYTEALKIDARNININS 270
A +E K +++ + L +S
Sbjct: 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK-SS 305
Query: 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
LL +A LF ++ + +A T LE DP L H G+ + + +
Sbjct: 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364
Score = 67.2 bits (164), Expect = 4e-12
Identities = 30/219 (13%), Positives = 56/219 (25%), Gaps = 39/219 (17%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
++ ++ +A+ Y+ A + Y +M LG A + + + +L
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
L + + AI AL + K
Sbjct: 474 DPLLL-----NELGV-----------VAFNKSDMQTAINHFQNALLLVKKTQSNEK---- 513
Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
+ L L A + N L + +
Sbjct: 514 --PWAATWANL-----------------GHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554
Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA 229
L + LA+ H L ++P+ A + KRA
Sbjct: 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593
Score = 64.5 bits (157), Expect = 3e-11
Identities = 31/285 (10%), Positives = 66/285 (23%), Gaps = 39/285 (13%)
Query: 87 DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMD 146
+P + AQ + +L A Y+ A F ++ +D
Sbjct: 53 ISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD 112
Query: 147 QGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV 206
A+ A+ + ++ ++ CL A+
Sbjct: 113 ITGNPNDA-FWLAQVYCCTGDYARAKCLLTKEDL-YNRSSACRYLAAFCLVKLYDWQGAL 170
Query: 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE----GNEKFVAGKNQEAFDIYTEALKID 262
N D A + + +K + G A + Y EAL +D
Sbjct: 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230
Query: 263 ---------------------------------ARNININSKLLHNRATVLFKMGKYNEA 289
++ + L+
Sbjct: 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290
Query: 290 IADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
D ++ L + ++ + + KI ++D
Sbjct: 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335
Score = 56.8 bits (137), Expect = 1e-08
Identities = 22/196 (11%), Positives = 51/196 (26%), Gaps = 3/196 (1%)
Query: 165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE 224
+ + A + +L NP+ F A L + +
Sbjct: 97 QQQYKCAAFVGEKVLDIT-GNPNDAFWLAQVYCCTGDYARAK-CLLTKEDLYNRSSACRY 154
Query: 225 TYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG 284
+ + + L + I + + + + R V +
Sbjct: 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214
Query: 285 KYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLE 344
++ A AL D +A + H L +E + + Y + +
Sbjct: 215 NFDRAKECYKEALMVDAKCYEAFDQLVSN-HLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273
Query: 345 EAKRLLKRSEVKDYYK 360
L ++ +D +
Sbjct: 274 LYMLKLNKTSHEDELR 289
Score = 32.5 bits (74), Expect = 0.29
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACY 48
K A+ E++++ PN
Sbjct: 557 ALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 100 bits (250), Expect = 6e-23
Identities = 40/117 (34%), Positives = 62/117 (52%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
AE+ K N +K K Y A+K YS+AI + P+ A YYGNR+ Y+ Y YAL DA
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
A+ LD ++ KG R+ N+ALG A + + + ++ P + + + + K
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 122
Score = 87.0 bits (216), Expect = 1e-18
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
K + N+ F A + A Y++A++++ N + NR+ + Y A+ D T
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATR 65
Query: 296 ALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE 354
A+E D Y+K RR ALG+++ + D E + K+ + ++ +E +++K+
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125
Query: 355 VKDYYKI 361
+
Sbjct: 126 FERAIAG 132
Score = 44.3 bits (105), Expect = 6e-05
Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 125 ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ 184
A+ F+A DY A+ + +A++ ++ Y ++ A A + DK+
Sbjct: 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 72
Query: 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV 244
+ R K A+ ++ ++K+ P AK Y+ K K++ E+ +
Sbjct: 73 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN--KIVKQKAFERAI 130
Query: 245 AGKNQE 250
AG +
Sbjct: 131 AGDEHK 136
Score = 40.1 bits (94), Expect = 0.002
Identities = 32/159 (20%), Positives = 51/159 (32%), Gaps = 33/159 (20%)
Query: 273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
L +A FK Y AI + A+E +P+ R + Y + DA + +
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 68
Query: 333 MDNSRENHNFLEEAKRLLKRSEVKDYYK------ILGVTKNASSDDIKKAYRKRALVHHP 386
+D +K YY+ LG + A D + + +
Sbjct: 69 LDKKY-----------------IKGYYRRAASNMALGKFRAA-LRDYETVVKVKP----- 105
Query: 387 DRHTNATQAQKL-EQEKLFKEVGEAYGILSDPTKRSRYD 424
+ K E K+ K+ I D KRS D
Sbjct: 106 ---HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 141
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 92.2 bits (229), Expect = 9e-23
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 352 RSEVKDYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGE 409
R E +LG+ ++A + ++KAY K+ HPD+ + E+ K++
Sbjct: 4 REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNT 54
Query: 410 AYGILSDPTKRSRYDRGEDIMEDSGMGG 437
Y + D K + + + +
Sbjct: 55 LYKKMEDGVKYAHQPDFGGFWDATEIPT 82
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 92.0 bits (229), Expect = 1e-22
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 7/124 (5%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A K KE GN YK K + ALK Y +A + P Y N+AA Y G Y + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 64 AVSLDP-------RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116
A+ + + +K R A + + +A +
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123
Query: 117 TMAK 120
+ +
Sbjct: 124 ILKE 127
Score = 90.8 bits (226), Expect = 4e-22
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 11/133 (8%)
Query: 229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNE 288
K +KE GN+ + A Y +A ++D N+ + N+A V F+ G YN+
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEKGDYNK 56
Query: 289 AIADCTLALEKDPN-------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHN 341
C A+E KA +R + +YK+ + K + +
Sbjct: 57 CRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116
Query: 342 FLEEAKRLLKRSE 354
++A+++LK E
Sbjct: 117 KCQQAEKILKEQE 129
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 93.7 bits (233), Expect = 2e-22
Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 13/162 (8%)
Query: 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI------------NINSKLLH 274
++ + KEEGNE F + EA Y EAL NI
Sbjct: 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92
Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
N AT K Y +AI + L+ D N +KAL + G +E + K ++
Sbjct: 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152
Query: 335 -NSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKK 375
N+ + N E LK + KD G+ + KK
Sbjct: 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKK 194
Score = 86.4 bits (214), Expect = 9e-20
Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 16/133 (12%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----------------AAYYGNRAAC 47
A KE+GN +K + ++A+ Y EA+ + + N A C
Sbjct: 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97
Query: 48 YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
Y Y A+D A + +D K L + N+ G A+ NL L+P+N
Sbjct: 98 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157
Query: 108 IAQESKALETMAK 120
I + K
Sbjct: 158 IRNSYELCVNKLK 170
Score = 44.4 bits (105), Expect = 2e-05
Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 14/137 (10%)
Query: 119 AKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR---------LQ 169
A Y+ A+ + + K E +LN
Sbjct: 51 KNEINEAIVK-----YKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP 105
Query: 170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA 229
+A + A+ +L DK N A++ G+ Y ++ A + L P++ + +Y+
Sbjct: 106 KAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165
Query: 230 KLLKAKKEEGNEKFVAG 246
+ + ++ G
Sbjct: 166 VNKLKEARKKDKLTFGG 182
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 88.6 bits (220), Expect = 7e-22
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 334 DNSRENHNFLEEAKRLLKR-SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNA 392
+S + +F +E ++R KD + +LGV AS D++ KAYRK A++ HPD+
Sbjct: 4 GSSGSSASFTKEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP 63
Query: 393 TQAQKLEQEKLFKEVGEAYGILSDPTKRSRYD 424
FK V A L K
Sbjct: 64 GSEDA------FKAVVNARTALLKNIKSGPSS 89
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 94.7 bits (236), Expect = 1e-21
Identities = 52/325 (16%), Positives = 93/325 (28%), Gaps = 32/325 (9%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
Y + K S + P A+ + L + V L P
Sbjct: 29 AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88
Query: 71 -----FSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALE-TMAKNFE 123
F+ G + + AR L KA L+ A + + +
Sbjct: 89 NPVSWFAVGCYYLMVGH----KNEHARRYLSKATT-LEKTY-GPAWIAYGHSFAVESEHD 142
Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
A A Y TA + +G + N + A+ + L+
Sbjct: 143 QAMAA-----YFTAA-----QLMKGCHLPMLYI--GLEYGLTNNSKLAERFFSQALSIAP 190
Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
++P + G+ + + + A F L+ K LL G+
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL---GHVCR 247
Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
K EA D + +AL + +N + + MG + A+ AL +
Sbjct: 248 KLKKYAEALDYHRQALVLIPQNAST----YSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303
Query: 304 LKALSRRCKCFHALGQYKECVIDAE 328
+++ C E I A+
Sbjct: 304 TFSVTMLGHCIEMYIGDSEAYIGAD 328
Score = 49.2 bits (118), Expect = 1e-06
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 248 NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKAL 307
N+ + + E++ N+++ + + A + + ++ +EKDP + L
Sbjct: 4 NKPSETVIPESVDGLQENLDV----VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL 59
Query: 308 SRRCKCFHALGQYKECVIDAEK 329
L + E + K
Sbjct: 60 PVHIGTLVELNKANELFYLSHK 81
Score = 36.9 bits (86), Expect = 0.010
Identities = 7/53 (13%), Positives = 16/53 (30%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
G + + A+ + A+ + + C M + A A +
Sbjct: 277 GYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADI 329
Score = 28.8 bits (65), Expect = 3.7
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 284 GKYNEAIADCTL-ALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
G YN+ +++ L + + + +K C + + D
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD 52
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 93.1 bits (232), Expect = 4e-21
Identities = 48/351 (13%), Positives = 89/351 (25%), Gaps = 75/351 (21%)
Query: 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDA 61
+ E E+G + KL ++A + P + + A+
Sbjct: 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIAL 78
Query: 62 KLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAK 120
A LDP+ + L + N A+A L + +
Sbjct: 79 NHARMLDPKD-----------------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA 180
+ S +A+ + A N +E + + ++ L
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDF---------------FFAAPNEYRECRTLLHAALE 166
Query: 181 TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN 240
+ + G+ + D A + + ++L PD A+ K L
Sbjct: 167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW--NKLGATLANG----- 219
Query: 241 EKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
+ QEA D Y AL I N A M +Y+ A
Sbjct: 220 -----NRPQEALDAYNRALDINPGYVRVMY---------NMAVSYSNMSQYDLAAKQLVR 265
Query: 296 ALEKDPNYLKALSRRC------------KCFHALGQYKECVIDAEKIYKMD 334
A+ + + + E Y +
Sbjct: 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL----VELTYAQN 312
Score = 67.3 bits (165), Expect = 1e-12
Identities = 32/296 (10%), Positives = 72/296 (24%), Gaps = 51/296 (17%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
G TQ + ++ A+ + A + P A + A + AL + + P+
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
+ + ++ ++ + D + + ALE
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDF-FFAAPNEYRECRTLLHAALEM------------- 167
Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
+ L GV N A + +
Sbjct: 168 NPNDAQLHASL------GVL-----------YNLSNNYDSAAANLRRAVELRPDDAQLWN 210
Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
G L ++ A++ + L + P + + Y A +
Sbjct: 211 KLGATLANGNRPQEALDAYNRALDINPGYVRVM--YNMAVSYSNM----------SQYDL 258
Query: 251 AFDIYTEALKIDA--------RNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
A A+ + + + +L M + + +E
Sbjct: 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314
Score = 51.9 bits (125), Expect = 1e-07
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 6/114 (5%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
G T + +AL Y+ A+ + P N A Y + Y A A+ +
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLK-ALQELDPDNPAIAQESKALETMAKNFE 123
+ + + + L ++ + ++ +E AK F
Sbjct: 273 GTTPTG-----EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321
Score = 42.3 bits (100), Expect = 2e-04
Identities = 12/71 (16%), Positives = 25/71 (35%)
Query: 1 ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
++ + + +Y + A+ + PN A + + Y + Y A +
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN 194
Query: 61 AKLAVSLDPRF 71
+ AV L P
Sbjct: 195 LRRAVELRPDD 205
Score = 42.3 bits (100), Expect = 2e-04
Identities = 8/77 (10%), Positives = 16/77 (20%), Gaps = 4/77 (5%)
Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
G + Y N + + + K+ EA + P +
Sbjct: 1 GHMLQNNTDYPFEAN----NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE 56
Query: 306 ALSRRCKCFHALGQYKE 322
A +
Sbjct: 57 AWRSLGLTQAENEKDGL 73
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 87.3 bits (217), Expect = 7e-21
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 7/118 (5%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A K+ GN YK K + KA Y +AI + P+ +Y N+AA Y + + +
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 64 AVSLDP-------RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA 114
AV + +K + R D A D + + +
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKEL 125
Score = 84.6 bits (210), Expect = 5e-20
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 11/122 (9%)
Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
A+K+ GN + ++A Y +A+++D NI +N+A V F+ K+ E + C
Sbjct: 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI----TFYNNKAAVYFEEKKFAECVQFC 65
Query: 294 TLALEKDPN-------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEA 346
A+E KA+SR F V + E ++E
Sbjct: 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKEL 125
Query: 347 KR 348
++
Sbjct: 126 EK 127
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 87.4 bits (217), Expect = 2e-20
Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 16/146 (10%)
Query: 228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI--------------DARNININSKLL 273
+ K ++A +++GNE FV +EA D Y +AL N L
Sbjct: 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLY 66
Query: 274 HNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
N + +G +EA + L+++ KAL RR K A + E D + + +
Sbjct: 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126
Query: 334 D--NSRENHNFLEEAKRLLKRSEVKD 357
+ ++ +
Sbjct: 127 HPAAASVVAREMKIVTERRAEKKADS 152
Score = 84.4 bits (209), Expect = 2e-19
Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 19/148 (12%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV------------------AAYYGNRA 45
E ++ GN + K Y +A+ Y +A++ + Y N +
Sbjct: 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMS 70
Query: 46 ACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN 105
CY+ +G A + + + + K L R+ K IA A +LK L P
Sbjct: 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130
Query: 106 P-AIAQESKALETMAKNFEGASKAFEAN 132
+A+E K + + S+ +
Sbjct: 131 ASVVAREMKIVTERRAEKKADSRVTYSK 158
Score = 40.4 bits (95), Expect = 3e-04
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
++C ++ L EA+E ++ +L ++ N A+F R K+D A +LLL+ P
Sbjct: 70 SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129
Query: 219 HAKAKETYKRAKLLKAKKEEGNEK 242
A + K++ ++ E
Sbjct: 130 AASVVA--REMKIVTERRAEKKAD 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 91.1 bits (226), Expect = 2e-20
Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 24/213 (11%)
Query: 218 DHAKAKETYK-----RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI------ 266
KAKE+++ + + KE G F GK ++A Y + +
Sbjct: 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE 187
Query: 267 -----NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYK 321
+ N A K+ ++ AI C ALE D N K LSRR + A+ ++
Sbjct: 188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 247
Query: 322 ECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKD---YYKILGVTKNASSDDIKKAY 377
D +K+ ++ N++ L ++ ++R ++ Y + ++ KA
Sbjct: 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA----EEENKAK 303
Query: 378 RKRALVHHPDRHTNATQAQKLEQEKLFKEVGEA 410
+ + HP + + + EA
Sbjct: 304 AEASSGDHPTDTEMKEEQKSNTAGSQSQVETEA 336
Score = 87.6 bits (217), Expect = 3e-19
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---------------AAYYGNRAACY 48
+ KE G +K +Y +AL Y + +S A + N A C+
Sbjct: 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206
Query: 49 MMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI 108
+ L ++ A++ A+ LD KGL R+ + ++A+ D AR++ + + +L P+N A
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
Query: 109 AQESKALETMAKNFEGASKAFEAN 132
+ + + K AN
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYAN 290
Score = 46.4 bits (110), Expect = 1e-05
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
A C L A E N L D N + RG + +LA FQ +L+L P+
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262
Query: 219 HAKAKETYKRAKLLKAKKEEGNEKFVAGK 247
+ AK + ++ EK +
Sbjct: 263 NKAAKTQLAVCQQRIRRQLA-REKKLYAN 290
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 93.2 bits (231), Expect = 3e-20
Identities = 40/324 (12%), Positives = 75/324 (23%), Gaps = 39/324 (12%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+ + L+ + L +A + P + L L
Sbjct: 192 VVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ 251
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETMAKNF 122
A L P + I AL L L PD AIA + +
Sbjct: 252 AHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALET-- 309
Query: 123 EGASKAFEANDYRTAMFYLDRAM----DQGVASKTYKLMKAECLAHLNRLQEAQEIANSI 178
+ + L +A DQ VA + L +Q +
Sbjct: 310 -----------VQRLLPVLCQAHGLTPDQVVAIAS----HDGGKQALETVQRLLPVLCQA 354
Query: 179 LATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238
A+ G + + + L PD A + + L
Sbjct: 355 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQAL------ 408
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
Q + +A + + + + + +
Sbjct: 409 -------ETVQRLLPVLCQAHGLTPDQVVA----IASHDGGKQALETVQRLLPVLCQTHG 457
Query: 299 KDPNYLKALSRRCKCFHALGQYKE 322
P + A++ AL ++
Sbjct: 458 LTPAQVVAIASHDGGKQALETVQQ 481
Score = 91.2 bits (226), Expect = 1e-19
Identities = 39/323 (12%), Positives = 72/323 (22%), Gaps = 37/323 (11%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
G + L+ + L +A + P+ + L L
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIA---QESKALETMAK 120
A L P + AL L L PD +ALET+ +
Sbjct: 354 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQR 413
Query: 121 NFEGASKAFEAN-DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL 179
+A D A+ D L +Q +
Sbjct: 414 LLPVLCQAHGLTPDQVVAIASHDGG-----------------KQALETVQRLLPVLCQTH 456
Query: 180 ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239
A+ + + + L PD A +
Sbjct: 457 GLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASN------------I 504
Query: 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK 299
K Q + +A + + + + + + A
Sbjct: 505 GGKQALATVQRLLPVLCQAHGLTPDQVVA----IASNGGGKQALETVQRLLPVLCQAHGL 560
Query: 300 DPNYLKALSRRCKCFHALGQYKE 322
P+ + A++ AL +
Sbjct: 561 TPDQVVAIASNGGGKQALETVQR 583
Score = 80.8 bits (199), Expect = 3e-16
Identities = 33/321 (10%), Positives = 66/321 (20%), Gaps = 30/321 (9%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
+ + L + L +A + P+ + L L
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 555
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETMAKN 121
A L P + AL L L AIA + +
Sbjct: 556 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQAL--- 612
Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
+ + L +A A L +Q +
Sbjct: 613 ----------ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGL 662
Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE 241
A+ G + + + L + A +A
Sbjct: 663 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA--IASNNGGKQA------- 713
Query: 242 KFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301
Q + +A + + + + + + A P
Sbjct: 714 ---LETVQRLLPVLCQAHGLTPDQVVA----IASNGGGKQALETVQRLLPVLCQAHGLTP 766
Query: 302 NYLKALSRRCKCFHALGQYKE 322
+ A++ AL +
Sbjct: 767 AQVVAIASNIGGKQALETVQR 787
Score = 71.2 bits (174), Expect = 3e-13
Identities = 39/334 (11%), Positives = 80/334 (23%), Gaps = 25/334 (7%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+ L+ + L +A + P+ + L L
Sbjct: 633 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 692
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA----IAQESKALETMA 119
A L + AL L L PD +ALET+
Sbjct: 693 AHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 752
Query: 120 KNFEGASKAFEAN-DYRTAMF----------YLDRAMDQGVASKTYKLMKAECLAHLNRL 168
+ +A A+ + R + L + +A
Sbjct: 753 RLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGG 812
Query: 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKR 228
++A E +L Q + + + + A+ Q LL +
Sbjct: 813 KQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVV 872
Query: 229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNE 288
A ++ E Q + + + + + +A +
Sbjct: 873 AIASNIGGKQALETV-----QRLLPVLCQDHGLTLDQVVAIASNGGKQA-----LETVQR 922
Query: 289 AIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
+ P+ + A++ AL +
Sbjct: 923 LLPVLCQDHGLTPDQVVAIASNSGGKQALETVQR 956
Score = 67.7 bits (165), Expect = 4e-12
Identities = 35/320 (10%), Positives = 72/320 (22%), Gaps = 39/320 (12%)
Query: 20 YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI 79
+ A + + + R M ++ ++L P +
Sbjct: 140 LTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNN 199
Query: 80 KCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETMAKNFEGASKAFEANDYRTAM 138
AL L L P AIA + +
Sbjct: 200 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK-------------QALETMQRLL 246
Query: 139 FYLDRAM----DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL 194
L +A DQ VA + L +Q + A+ G
Sbjct: 247 PVLCQAHGLPPDQVVAIAS----NIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGG 302
Query: 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDI 254
+ + + L PD A +A Q +
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVA--IASHDGGKQAL----------ETVQRLLPV 350
Query: 255 YTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCF 314
+A + + + + + + A P+ + A++
Sbjct: 351 LCQAHGLTPDQV----VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN-GGK 405
Query: 315 HALGQYKECVIDAEKIYKMD 334
AL + + + + +
Sbjct: 406 QALETVQRLLPVLCQAHGLT 425
Score = 65.4 bits (159), Expect = 2e-11
Identities = 36/329 (10%), Positives = 79/329 (24%), Gaps = 39/329 (11%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+G + L+ + L +A + + L L
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-----------AIAQES 112
A L P + AL L L P A+
Sbjct: 727 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQ 786
Query: 113 KALETMAKNFEGASKAFEANDYRT----AMFYLDRAMDQGVASKTYKLMKAECLAHLNRL 168
+ L + ++ A A+ + R + + + +A
Sbjct: 787 RLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGG 846
Query: 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK-------LAPDHAK 221
++A E +L Q+ + + + + A+ Q LL L D
Sbjct: 847 KQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVV 906
Query: 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF 281
A + + L+ Q + + + + + + +
Sbjct: 907 AIASNGGKQALET-------------VQRLLPVLCQDHGLTPDQVVA----IASNSGGKQ 949
Query: 282 KMGKYNEAIADCTLALEKDPNYLKALSRR 310
+ + PN + A++
Sbjct: 950 ALETVQRLLPVLCQDHGLTPNQVVAIASN 978
Score = 44.3 bits (104), Expect = 8e-05
Identities = 15/119 (12%), Positives = 26/119 (21%), Gaps = 1/119 (0%)
Query: 205 AVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR 264
+ L A E L + K EA AL
Sbjct: 126 VGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPL 185
Query: 265 NININS-KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
N+ + + + + A P + A++ AL +
Sbjct: 186 NLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQR 244
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 89.8 bits (222), Expect = 3e-19
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 339 NHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKL 398
+H+ + ++ +++Y +LGV+K ASS +I++A++K AL HPD++ N A
Sbjct: 4 SHHHHHHSSGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNA--- 60
Query: 399 EQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDP 455
F ++ AY +L D R +YD+ + + GG + + ++ F Y D
Sbjct: 61 --HGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDD 115
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 78.2 bits (193), Expect = 4e-18
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 344 EEAKRLLKRSEVK-DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEK 402
L+ R + + ++ + KK R+ L HPD++ +
Sbjct: 3 HHHHHLVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPE----NHDIANE 58
Query: 403 LFKEVGEAYGILSDPTKRSRYDR 425
+FK + L K++ D+
Sbjct: 59 VFKHLQNEINRLE---KQAFLDQ 78
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 82.7 bits (205), Expect = 6e-18
Identities = 44/332 (13%), Positives = 84/332 (25%), Gaps = 66/332 (19%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVC----PNVAAYYGNRAACYMMLGMYTYAL 58
S K + Q L + ++ A R Y LG+ A
Sbjct: 4 SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63
Query: 59 DDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALET 117
+D A+++ P P + L L + + A LE
Sbjct: 64 NDFSQALAIRPDM-----------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106
Query: 118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANS 177
Y A +L+R + L + R + AQ+ +
Sbjct: 107 -------------DPTYNYA--HLNRGI---------------ALYYGGRDKLAQDDLLA 136
Query: 178 ILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237
D +P L D+ A + + + L E
Sbjct: 137 FYQDDPNDPFRSLWLYLAEQKLDEKQ-AKEVLKQHFEKSDKEQWG--WNIVEFYLGNISE 193
Query: 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL 297
+ + T+ + N +G + A A LA+
Sbjct: 194 Q-------TLMERLKADATDNTSLAEHLSETNF----YLGKYYLSLGDLDSATALFKLAV 242
Query: 298 EKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
+ + LGQ ++ + ++++
Sbjct: 243 ANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
Score = 60.8 bits (148), Expect = 2e-10
Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 10/160 (6%)
Query: 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE-----GNEKFVAGKNQEAFDIYTEALKI 261
Q L+ A+ ++ L ++ + G G A + +++AL I
Sbjct: 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI 72
Query: 262 DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYK 321
+ + L + G ++ A LE DP Y A R + G+ K
Sbjct: 73 RPDMPEV----FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK 128
Query: 322 ECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKDYYK 360
D Y+ D N +L A++ L + K+ K
Sbjct: 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK 168
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 83.9 bits (208), Expect = 8e-18
Identities = 44/350 (12%), Positives = 83/350 (23%), Gaps = 76/350 (21%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+ E+G + + A+ + A+ P + A+ +
Sbjct: 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKNF 122
+ L P TA L + A L
Sbjct: 124 CLELKPDN-----------------QTALMALAVSFTNESLQRQACEILRDWLRYTP--- 163
Query: 123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
Y + + + +++ + L + E +E+ + + D
Sbjct: 164 ----------AYAHLVTPAEEGAGGAGLGPSKRILGS--LLSDSLFLEVKELFLAAVRLD 211
Query: 183 KQNPDAV--FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN 240
+ D G+ + D AV+ F L + P+ K L
Sbjct: 212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW--NKLGATLANG----- 264
Query: 241 EKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
+++EA Y AL++ +R N +G + EA+
Sbjct: 265 -----NQSEEAVAAYRRALELQPGYIRSRY---------NLGISCINLGAHREAVEHFLE 310
Query: 296 ALEKDPNYLKALSRRC-----------KCFHALGQYKECVIDAEKIYKMD 334
AL LGQ D
Sbjct: 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA----YGAADARD 356
Score = 78.5 bits (194), Expect = 4e-16
Identities = 35/295 (11%), Positives = 81/295 (27%), Gaps = 48/295 (16%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
G TQ + +Q A+ + + P+ A + + A + + + P
Sbjct: 105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
+ L+ + ++ L +L A+
Sbjct: 165 Y-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL------------- 210
Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
GV +A + + L+ +
Sbjct: 211 DPTSIDPDVQCGL----GVL-----------FNLSGEYDKAVDCFTAALSVRPNDYLLWN 255
Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
G L ++ + AV ++ L+L P + +++ Y G ++E
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSR--YNLGISCINL----------GAHRE 303
Query: 251 AFDIYTEALKIDARNI-------NINSKLLHNRATVLFKMGKYNEAIADCTLALE 298
A + + EAL + ++ ++ + L +G+ + A L
Sbjct: 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358
Score = 57.0 bits (138), Expect = 5e-09
Identities = 36/232 (15%), Positives = 59/232 (25%), Gaps = 38/232 (16%)
Query: 169 QEAQEIANSILATDKQNP----DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE 224
+ +++NP F GL + + AV F+ ++ P H +A
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA-- 100
Query: 225 TYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG 284
+ A L++ N L A
Sbjct: 101 WQYLGTTQAEN----------EQELLAISALRRCLELKPD----NQTALMALAVSFTNES 146
Query: 285 KYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLE 344
+A L P Y ++ + G ++ S + +
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG--------LGPSKRILGSLLSDSLFL 198
Query: 345 EAKRLLKR-------SEVKDYYKILGVTKNASS--DDIKKAYRKRALVHHPD 387
E K L S D LGV N S D + AL P+
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA-ALSVRPN 249
Score = 52.3 bits (126), Expect = 2e-07
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
G T Q +A+ Y A+ + P N + LG + A++ A+++ +
Sbjct: 258 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLK-ALQELDPDNPAIAQESKALETMAKNFE 123
R + + S L+ AL L + A +++ L T+ F
Sbjct: 318 S-----RGPRGEGGA-MSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365
Score = 51.2 bits (123), Expect = 4e-07
Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 1/95 (1%)
Query: 229 AKLLKAKKEEGN-EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYN 287
A+L + K + +++ + Y + + + N + + G
Sbjct: 22 AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81
Query: 288 EAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
A+ A+++DP +++A Q
Sbjct: 82 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 82.8 bits (204), Expect = 1e-17
Identities = 38/167 (22%), Positives = 55/167 (32%), Gaps = 19/167 (11%)
Query: 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI-------------DARNININSKLL 273
+R +K +GN F K +EA Y A+ + + +
Sbjct: 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCH 233
Query: 274 HNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
N A L K+ +Y+EAI C + L ++ KAL RR K LGQ D K K
Sbjct: 234 LNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293
Query: 334 D-NSRENHNFLEEAKRLLKRSEVKD---YYKILGVTKNASSDDIKKA 376
+ + L K K Y I K+
Sbjct: 294 APDDKAIRRELRALAEQEKALYQKQKEMYKGIFK--GKDEGGAKSKS 338
Score = 77.0 bits (189), Expect = 1e-15
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAY-----------------YGNRAA 46
A++ K DGN+ +K ++ +A++ Y AI+ + + + N AA
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAA 238
Query: 47 CYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP 106
C + L Y A+ + ++ + + K L R+ K LG +AR + + Q+ PD+
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298
Query: 107 AIAQESKALETMAK 120
AI +E +AL K
Sbjct: 299 AIRRELRALAEQEK 312
Score = 49.6 bits (118), Expect = 9e-07
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 15/130 (11%)
Query: 119 AKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK----------AECLAHLNRL 168
+ E A + Y A+ Y+ + K + A CL L R
Sbjct: 192 EEKLEEAMQQ-----YEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY 246
Query: 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKR 228
EA N +L +++NP A+F RG +MD A + F+ K APD + +
Sbjct: 247 DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306
Query: 229 AKLLKAKKEE 238
+ +
Sbjct: 307 LAEQEKALYQ 316
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 77.3 bits (190), Expect = 7e-17
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 353 SEVKDYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEA 410
S +Y+++ G+ D + +R HPD A++ +L + ++ +A
Sbjct: 1 SNAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDA 60
Query: 411 YGILSDPTKRSRYDR 425
Y L DP +R+ Y
Sbjct: 61 YQTLKDPLRRAEYLL 75
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 74.2 bits (182), Expect = 8e-17
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 348 RLLKRSEVKDYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFK 405
R+L R++ + ++L + + D +++AY++++L+ HPD+ + L +
Sbjct: 3 RVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQ 53
Query: 406 EVGEAYGILSDPTKRSRYDRG 426
E+ +G R + G
Sbjct: 54 ELNSLWGTFKTEVYNLRMNLG 74
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 78.3 bits (194), Expect = 1e-16
Identities = 40/304 (13%), Positives = 84/304 (27%), Gaps = 67/304 (22%)
Query: 18 KQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIR 77
+ + + R G Y A + A+ +
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGGQQMGR---GSEFGDYEKAAEAFTKAIEENKED------ 56
Query: 78 QIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRT 136
N L ++ A+A KALE + T
Sbjct: 57 -----------AIPYINFANLLSSVNELERALAFYDKALEL-------------DSSAAT 92
Query: 137 AMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCL 196
A + G +EA+++ L +N D ++ G L
Sbjct: 93 AYYGA------GNV-----------YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL 135
Query: 197 YYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYT 256
++ LA+ + Q ++L + +A+ ++ L + G EA +
Sbjct: 136 VKLEQPKLALPYLQRAVELNENDTEAR--FQFGMCLANE----------GMLDEALSQFA 183
Query: 257 EALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA 316
+ D + + +N +A+ A++ P+++ AL + H
Sbjct: 184 AVTEQDPGHADA----FYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239
Query: 317 LGQY 320
+
Sbjct: 240 HHHH 243
Score = 75.2 bits (186), Expect = 1e-15
Identities = 23/190 (12%), Positives = 60/190 (31%), Gaps = 30/190 (15%)
Query: 165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA---- 220
++A E + +K++ L ++++ A+ + L+L A
Sbjct: 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 95
Query: 221 -------------KAKETYKRAKLLKAKKEE-----GNEKFVAGKNQEAFDIYTEALKID 262
+AK+ +++A + + G + + A A++++
Sbjct: 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155
Query: 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
+ L G +EA++ E+DP + A + ++
Sbjct: 156 ENDTEA----RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREK 211
Query: 323 CVIDAEKIYK 332
A ++
Sbjct: 212 ----ALEMLD 217
Score = 61.0 bits (149), Expect = 8e-11
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 16/131 (12%)
Query: 202 MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI 261
M + +H L P + + G ++A + +T+A++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQ--------MGRGSEFGDYEKAAEAFTKAIEE 52
Query: 262 DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYK 321
+ + + N A +L + + A+A ALE D + A + YK
Sbjct: 53 NKED----AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYK 108
Query: 322 ECVIDAEKIYK 332
E A+ +++
Sbjct: 109 E----AKDMFE 115
Score = 52.1 bits (126), Expect = 9e-08
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 18/107 (16%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
GN + Y +A + +A+ + + L AL + AV L+
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 71 FSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALE 116
++ AR L + A++Q + E
Sbjct: 158 DTE-----------------ARFQFGMCLANEGMLDEALSQFAAVTE 187
Score = 40.2 bits (95), Expect = 7e-04
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMY 54
G T + KAL+ +AI + P+ + +
Sbjct: 200 GVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 79.3 bits (196), Expect = 2e-16
Identities = 46/326 (14%), Positives = 89/326 (27%), Gaps = 58/326 (17%)
Query: 1 ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
E++ + S + K Y + G +
Sbjct: 28 EMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILF 87
Query: 61 AKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMA 119
+ A+ DP ++ A L E + + AI + LE
Sbjct: 88 MEAAILQDPGDAE-----------------AWQFLGITQAENENEQAAIVALQRCLELQP 130
Query: 120 KNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL 179
N + A+ L A + + Q+A E + +
Sbjct: 131 NNLK-------------ALMAL-----------------AVSYTNTSHQQDACEALKNWI 160
Query: 180 ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA---KETYKRAKLLKAKK 236
+ + V + +M + +L + + +A L
Sbjct: 161 KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL- 219
Query: 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296
G ++G+ A D + AL + + L + L + EA+ T A
Sbjct: 220 --GVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRA 273
Query: 297 LEKDPNYLKALSRRCKCFHALGQYKE 322
LE P ++++ LG Y+E
Sbjct: 274 LEIQPGFIRSRYNLGISCINLGAYRE 299
Score = 75.5 bits (186), Expect = 5e-15
Identities = 42/316 (13%), Positives = 84/316 (26%), Gaps = 64/316 (20%)
Query: 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDA 61
E+G + K + AI P A + A+
Sbjct: 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL 122
Query: 62 KLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN 121
+ + L P K L +A+ + A ++ K
Sbjct: 123 QRCLELQPNNLKAL-----MALAV-----------SYTNTSHQQDACEALKNWIKQNPKY 166
Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
++ + + M ++ + L+ +E+
Sbjct: 167 KYLVK-------------------NKKGSPGLTRRM-SKSPVDSSVLEGVKELYLEAAHQ 206
Query: 182 --DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239
D +PD G+ + + + A++ F L + P+ + L
Sbjct: 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLW--NRLGATLANG---- 260
Query: 240 NEKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCT 294
+++EA + YT AL+I +R N +G Y EA+++
Sbjct: 261 ------DRSEEAVEAYTRALEIQPGFIRSRY---------NLGISCINLGAYREAVSNFL 305
Query: 295 LALEKDPNYLKALSRR 310
AL
Sbjct: 306 TALSLQRKSRNQQQVP 321
Score = 55.8 bits (135), Expect = 1e-08
Identities = 12/122 (9%), Positives = 26/122 (21%), Gaps = 8/122 (6%)
Query: 201 KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK 260
+ + A + + E + + + +NQ +
Sbjct: 4 EFERAKAAVESDTEFWDKMQAEWE--------EMARRNWISENQEAQNQVTVSASEKGYY 55
Query: 261 IDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY 320
N + K G I A+ +DP +A
Sbjct: 56 FHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENE 115
Query: 321 KE 322
+
Sbjct: 116 QA 117
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 78.2 bits (192), Expect = 2e-16
Identities = 44/273 (16%), Positives = 85/273 (31%), Gaps = 33/273 (12%)
Query: 51 LGMYTYALDDAKLAVSLDPRFS-KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIA 109
+G Y +++A+ P + + + +A L E+ P +
Sbjct: 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKY------GVVLDEIKPSSAPEL 65
Query: 110 QESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ 169
Q A+ A+ S+ A + + V + T+ LM A +
Sbjct: 66 Q---AVRMFAEYLASHSRRDAI----VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPD 118
Query: 170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA 229
A + + + + + L D++DLA + + D +
Sbjct: 119 AALRTLH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWV 173
Query: 230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA 289
L K Q+A+ I+ E + LL+ +A G++ A
Sbjct: 174 SLAAGG----------EKLQDAYYIFQEMADKCSPT----LLLLNGQAACHMAQGRWEAA 219
Query: 290 IADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
AL+KD + + L LG+ E
Sbjct: 220 EGVLQEALDKDSGHPETLINLVVLSQHLGKPPE 252
Score = 59.4 bits (143), Expect = 5e-10
Identities = 38/229 (16%), Positives = 68/229 (29%), Gaps = 21/229 (9%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
AE + + + + + SV + A+ Y AL
Sbjct: 72 AEYLASHSRRDAIVAELDREM-----SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
SL+ I + L AR LK +Q+ D D + Q + A ++A E
Sbjct: 127 GDSLECMAMTVQIL-----LKLDRLDLARKELKKMQDQDEDAT-LTQLATAWVSLAAGGE 180
Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
+ A + D+ + +A C R + A+ + L D
Sbjct: 181 ---------KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231
Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHF-QLLLKLAPDHAKAKETYKRAKL 231
+P+ + + + K N + L H KE +
Sbjct: 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKEND 280
Score = 54.4 bits (130), Expect = 2e-08
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 18 KQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIR 77
++ A + E C +AAC+M G + A + A+ D + LI
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 78 QIKCNIALGDAPTARSN-LKALQELDPDNPAIAQESKALETMAKNFEGASKAFEA 131
+ + LG P + L L++ +P I K +F+ +
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQYAP 290
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 79.0 bits (194), Expect = 6e-16
Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 18/201 (8%)
Query: 217 PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI-----------DARN 265
+ +T ++ + KE+G F GK +A Y + + +
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Query: 266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVI 325
+ N A K+ +Y +A+ C AL D K L RR + + +++
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 326 DAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKD---YYKILGVTKNASSDDIKKAYRKRA 381
D EK+ +++ ++ + ++ K +D Y + + D K+ K
Sbjct: 373 DFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK---KFAEQDAKEEANKAM 429
Query: 382 LVHHPDRHTNATQAQKLEQEK 402
+ TN E+
Sbjct: 430 GKKTSEGVTNEKGTDSQAMEE 450
Score = 74.7 bits (183), Expect = 1e-14
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 20/149 (13%)
Query: 6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAY---------------YGNRAACYMM 50
KE G +K +Y +A+ Y + +S + N A CY+
Sbjct: 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329
Query: 51 LGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQ 110
L YT A++ A+ LD KGL R+ + + + + +A+ + + + E++P N A
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 111 ESKALETMAKNFEGASKAFEANDYRTAMF 139
+ + AK + AN MF
Sbjct: 390 QISMCQKKAKEHNERDRRIYAN-----MF 413
Score = 49.3 bits (117), Expect = 1e-06
Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 20/193 (10%)
Query: 65 VSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEG 124
+ L PR+ G + K I LK+ ++ +E A E
Sbjct: 217 LYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ--AAIVKEK 274
Query: 125 ASKAFEANDYRTAMFYLDRA-----MDQGVASKTYKLMK----------AECLAHLNRLQ 169
+ F+ Y A+ + M+ G++ K K + A C L
Sbjct: 275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334
Query: 170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA 229
+A E + L D N ++ RG ++ + A F+ +L++ P + A+
Sbjct: 335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM- 393
Query: 230 KLLKAKKEEGNEK 242
+ K +E NE+
Sbjct: 394 --CQKKAKEHNER 404
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 77.7 bits (191), Expect = 1e-15
Identities = 53/406 (13%), Positives = 106/406 (26%), Gaps = 55/406 (13%)
Query: 1 ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVC---------PNVAAYYGNRAACYMML 51
E A ++ Q AL+C +A + +GN A Y +
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 52 GMYTYALDDAKLAVSLDPRFS---KGLIRQIKCNIALGDAPTARSNL--------KALQE 100
G + + +FS + ++ C + KAL E
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL-E 166
Query: 101 LDPDNP-------AIAQESKALETMAKNFEGASKAFEAN-DYRTAMFYLDRAMDQGVASK 152
P NP + + +A N D + L
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA---------- 216
Query: 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL 212
L + E +++ L D + D+ D A+ +
Sbjct: 217 ---LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273
Query: 213 LKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKL 272
L+ P++A K + + ++ ++ A+ + N L
Sbjct: 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333
Query: 273 ---LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
A++ +Y EA K+ + + + +C A
Sbjct: 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393
Query: 330 IYK-----MDNSRENHNFLEEAKRLLKRSEVKD-----YYKILGVT 365
+ SRE ++ +++ K K+ +L
Sbjct: 394 HFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFL 439
Score = 64.2 bits (156), Expect = 3e-11
Identities = 41/299 (13%), Positives = 86/299 (28%), Gaps = 30/299 (10%)
Query: 4 AEKHKEDGNTQYKLK---QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
E Y+L A+ +AI + P+ A + +
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231
Query: 61 AKL----AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP------AIAQ 110
+ A+ P + L K + A LK E P+N
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291
Query: 111 ESKALETMAKNFEGASKAFEAND-YRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ 169
+K + M G + + A+ +L +A + + A A ++ +
Sbjct: 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351
Query: 170 EAQEIANSILATDKQNPDAVFVR----GLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET 225
EA+ + + + LY D A++HF +K+ + ++
Sbjct: 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411
Query: 226 YKRAKLLKAKKEEGNEKFVA------------GKNQEAFDIYTEALKIDARNININSKL 272
+ + + + N K Q+A + L+ + + +S
Sbjct: 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
Score = 57.3 bits (138), Expect = 5e-09
Identities = 32/241 (13%), Positives = 72/241 (29%), Gaps = 21/241 (8%)
Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD----------DKMDLAVNH 208
A H+ RL + Q + + ++ + L + ++ + A
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160
Query: 209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI 268
F+ L+ P + + A +Q A D +A++++ N +
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNW---------PPSQNAIDPLRQAIRLNPDNQYL 211
Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328
L + + + E ALEK P L K + + + + +
Sbjct: 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271
Query: 329 KIYKMD-NSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIK-KAYRKRALVHHP 386
K + N+ H + R + + + A+ K+A +
Sbjct: 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331
Query: 387 D 387
+
Sbjct: 332 N 332
Score = 29.5 bits (66), Expect = 2.7
Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 260 KIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE---------KDPNYLKALSRR 310
+ + +N + + + A + G+ A+ A E + L
Sbjct: 41 RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY 100
Query: 311 CKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEA 346
++ +G+ + I +K+ + + +E
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 70.9 bits (174), Expect = 5e-15
Identities = 26/115 (22%), Positives = 42/115 (36%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
E+ G QY+ ++ A K + + A Y+ AC LG+Y AL
Sbjct: 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY 77
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETM 118
+D + +C++ LGD A S + + L PA + M
Sbjct: 78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132
Score = 62.5 bits (152), Expect = 5e-12
Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 16/145 (11%)
Query: 209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI 268
+L L+ D + Y + AGK +A I+ +D +
Sbjct: 7 LAMLRGLSEDTLEQ--LYALGFNQ----------YQAGKWDDAQKIFQALCMLDHYD--- 51
Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328
++ +G Y +A+ + D N + +C LG
Sbjct: 52 -ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110
Query: 329 KIYKMDNSRENHNFLEEAKRLLKRS 353
+ ++ H L + +
Sbjct: 111 SARALAAAQPAHEALAARAGAMLEA 135
Score = 49.4 bits (118), Expect = 2e-07
Identities = 24/149 (16%), Positives = 39/149 (26%), Gaps = 12/149 (8%)
Query: 94 NLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT 153
L L+ L D L + N ++A + A
Sbjct: 6 TLAMLRGLSEDTLE------QLYALGFNQ------YQAGKWDDAQKIFQALCMLDHYDAR 53
Query: 154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLL 213
Y L C L ++A + + D P F C +D A + F
Sbjct: 54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113
Query: 214 KLAPDHAKAKETYKRAKLLKAKKEEGNEK 242
LA + RA + ++
Sbjct: 114 ALAAAQPAHEALAARAGAMLEAVTARKDR 142
Score = 40.1 bits (94), Expect = 3e-04
Identities = 18/147 (12%), Positives = 39/147 (26%), Gaps = 12/147 (8%)
Query: 27 YSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG 86
+ + + G + A + LD ++ + C +LG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 87 DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMD 146
A + +D + P + A+ + D A A
Sbjct: 67 LYEQALQSYSYGALMDINEP------RFPFHAAECH------LQLGDLDGAESGFYSARA 114
Query: 147 QGVASKTYKLMKAECLAHLNRLQEAQE 173
A ++ + A A L + ++
Sbjct: 115 LAAAQPAHEALAARAGAMLEAVTARKD 141
Score = 33.2 bits (76), Expect = 0.057
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMML 51
+L A + A ++ A+ A ML
Sbjct: 93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 71.5 bits (175), Expect = 6e-15
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 357 DYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGIL 414
DY+ + G+ D + ++ +HPD+ + +QA++L + + +A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 415 SDPTKRSRYDR 425
P R+ Y
Sbjct: 62 RHPLMRAEYLL 72
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 76.0 bits (186), Expect = 8e-15
Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 16/183 (8%)
Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
A ++EA + L + A L K+ A+ H++ ++++P
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 219 HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRAT 278
A A LK Q A YT A++I+ + N A+
Sbjct: 76 FADAY--SNMGNTLKE----------MQDVQGALQCYTRAIQINPAF----ADAHSNLAS 119
Query: 279 VLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE 338
+ G EAIA AL+ P++ A C + + + +K+ + +
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179
Query: 339 NHN 341
N
Sbjct: 180 EKN 182
Score = 59.1 bits (142), Expect = 2e-09
Identities = 33/212 (15%), Positives = 55/212 (25%), Gaps = 46/212 (21%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
N + + +A++ Y +A+ V P AA + N A+ G AL K A+ + P
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
F+ + D A +++P
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD----------------------- 112
Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
A L A + EA + L PDA
Sbjct: 113 ------AHSNL-----------------ASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149
Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA 222
CL + L+ + D +
Sbjct: 150 NLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
Score = 54.0 bits (129), Expect = 6e-08
Identities = 29/158 (18%), Positives = 53/158 (33%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
A+ + GNT +++ AL+CY+ AI + P A + N A+ + G A+ +
Sbjct: 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
A+ L P F C + D +K L + D + + +
Sbjct: 137 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYP 196
Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC 161
+ +A R LD+ +
Sbjct: 197 LSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS 234
Score = 41.7 bits (97), Expect = 5e-04
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 272 LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV 324
L+N A + + G EA+ ALE P + A S G+ +E +
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 69.6 bits (170), Expect = 2e-14
Identities = 22/115 (19%), Positives = 40/115 (34%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
E+ QY+ Y A + + + ++ AC +G Y A+
Sbjct: 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETM 118
+D + +C + G+ A S L QEL + P + S + +M
Sbjct: 81 GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM 135
Score = 54.5 bits (131), Expect = 4e-09
Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 17/144 (11%)
Query: 209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI 268
+L +++ D + Y A + +G ++A ++ +D +
Sbjct: 10 IAMLNEISSDTLEQ--LYSLAFNQ----------YQSGXYEDAHXVFQALCVLDHYDSRF 57
Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328
MG+Y+ AI + D + +C G+ E
Sbjct: 58 ----FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
Query: 329 KIYKMDNSRENHNFL-EEAKRLLK 351
++ + L +L+
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLE 137
Score = 53.0 bits (127), Expect = 1e-08
Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)
Query: 86 GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM 145
G + + L E+ D L ++A N +++ Y A
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLE------QLYSLAFNQ------YQSGXYEDAHXVFQALC 48
Query: 146 DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLA 205
+ L C + + A + D P F CL ++ A
Sbjct: 49 VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA 108
Query: 206 VNHFQLLLKLAPDHAKAKETYKRAKL----LKAKKEEGNE 241
+ L +L + + E R +K KKE +E
Sbjct: 109 ESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKHE 148
Score = 48.8 bits (116), Expect = 4e-07
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
G +I + + L++ A ++ G Y +A D +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLE----QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR 56
Query: 306 ALSRRCKCFHALGQYKECVIDAEKIYKMD 334
C A+GQY + MD
Sbjct: 57 FFLGLGACRQAMGQYDLAIHSYSYGAVMD 85
Score = 40.3 bits (94), Expect = 3e-04
Identities = 17/158 (10%), Positives = 37/158 (23%), Gaps = 12/158 (7%)
Query: 19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQ 78
+ + + + A G Y A + LD S+ +
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 79 IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAM 138
C A+G A + +D P + A
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF-------- 113
Query: 139 FYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
A + + + + L ++ +E+ +
Sbjct: 114 ----LAQELIANXPEFXELSTRVSSMLEAIKLKKEMKH 147
Score = 34.5 bits (79), Expect = 0.023
Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 12/105 (11%)
Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP 217
A ++A + ++ D + G C + DLA++ + +
Sbjct: 27 LAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86
Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262
+ + A+ L G+ EA A ++
Sbjct: 87 XEPRF--PFHAAECLLQ----------XGELAEAESGLFLAQELI 119
Score = 29.5 bits (66), Expect = 1.4
Identities = 5/49 (10%), Positives = 11/49 (22%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMML 51
+ + ++A A + N + ML
Sbjct: 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 70.5 bits (172), Expect = 3e-14
Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 2/122 (1%)
Query: 331 YKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTK--NASSDDIKKAYRKRALVHHPDR 388
RE+ F + + L +DY+ ++ + + ++ Y++ + HPD
Sbjct: 18 GPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDF 77
Query: 389 HTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHM 448
+ +Q +K EK V +AY L P R Y +E + F +
Sbjct: 78 FSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEI 137
Query: 449 FQ 450
+
Sbjct: 138 ME 139
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 73.1 bits (179), Expect = 4e-14
Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 20/214 (9%)
Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLY---------YDDKMDLAVNH 208
E + A + L +N ++ + L + + +V
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALT-HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201
Query: 209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI 268
+L +++ ++ A L G +Q+A Y +A K+D + +
Sbjct: 202 AKLAVQMDVLDGRSWYILGNA-YLSLYFNTGQNP---KISQQALSAYAQAEKVDRKASS- 256
Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV---- 324
N L NRAT+ Y EA+ + A DP + + R + L + +
Sbjct: 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316
Query: 325 -IDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKD 357
+K+ M S + + + +
Sbjct: 317 KTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQK 350
Score = 56.2 bits (135), Expect = 1e-08
Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 16/165 (9%)
Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP 217
+ E L +LQ + + + ++M+ + + +L A
Sbjct: 40 EEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQ 99
Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRA 277
A+A + K L + + EA + ++A+K++ + +
Sbjct: 100 VEAQA--LMLKGKALNVTPD---------YSPEAEVLLSKAVKLEPELVEA----WNQLG 144
Query: 278 TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
V +K G A + AL N +L L
Sbjct: 145 EVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSG 188
Score = 45.0 bits (106), Expect = 3e-05
Identities = 18/147 (12%), Positives = 41/147 (27%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+ G +Q A + + + NRA + Y AL+
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
A +LDP + + R+ + L + + + + + L
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRY 343
Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVA 150
++ + + L ++ G
Sbjct: 344 QSASGQKMTLELKPLSTLQPGVNSGTV 370
Score = 40.0 bits (93), Expect = 0.001
Identities = 17/173 (9%), Positives = 40/173 (23%), Gaps = 15/173 (8%)
Query: 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM----GKYNEAIAD 292
+ + + + H+ K + + +
Sbjct: 32 RGSMMADEEEEAKHVLQKLQGLVD-RLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQ 90
Query: 293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDA-EKIYKMD-NSRENHNFLEEAKRLL 350
L +AL + K + Y K K++ E N L E
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150
Query: 351 KRSE--VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQE 401
+ L KN + + ++V + + + + +
Sbjct: 151 GDVTSAHTCFSGALTHCKNK------VSLQNLSMVLRQLQTDSGDEHSRHVMD 197
Score = 34.6 bits (79), Expect = 0.075
Identities = 13/143 (9%), Positives = 34/143 (23%), Gaps = 21/143 (14%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMM--------LGMYT 55
+ + + + +++ A+ + + Y+ +
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238
Query: 56 YALDDAKLAVSLDPR--------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
AL A +D + ++ + + A LDP P
Sbjct: 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHK-----YEESYGEALEGFSQAAALDPAWPE 293
Query: 108 IAQESKALETMAKNFEGASKAFE 130
Q + L ++
Sbjct: 294 PQQREQQLLEFLSRLTSLLESKG 316
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 69.4 bits (170), Expect = 8e-14
Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 17/177 (9%)
Query: 176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK 235
++ + + L + D A ++ LL+ AP++ A++ +
Sbjct: 44 TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDC--LEACAEMQVCR 101
Query: 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG-KYNEAIADCT 294
G+ ++A +Y + L+++A N+ + + + +
Sbjct: 102 ----------GQEKDALRMYEKILQLEADNLAA----NIFLGNYYYLTAEQEKKKLETDY 147
Query: 295 LALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLK 351
L A R +Y++ +K+ S E L++ R+ K
Sbjct: 148 KKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEK 204
Score = 65.5 bits (160), Expect = 2e-12
Identities = 21/177 (11%), Positives = 45/177 (25%), Gaps = 15/177 (8%)
Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
+ N RT M+Y S A +A +L N
Sbjct: 29 QTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV 88
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246
D + + A+ ++ +L+L D+ A E
Sbjct: 89 DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN--IFLGNYYYLTAE--------- 137
Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
+ ++ + + L + + +Y +A + + P+
Sbjct: 138 QEKKKLETDYKKLSSPTKMQYA----RYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
Score = 58.6 bits (142), Expect = 3e-10
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 237 EEGNEKFVAGKNQEAFDIYTEALKID------------ARNININSKLLHNRATVLFKMG 284
++ + AG+N +A + + + ++ +N I+SKL A K
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68
Query: 285 KYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFL 343
Y++A L+K PN + L + GQ K+ + EKI +++ ++ + FL
Sbjct: 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128
Query: 344 EEAKRLLKRSE---VKDYYKIL 362
L E ++ YK L
Sbjct: 129 GNYYYLTAEQEKKKLETDYKKL 150
Score = 55.1 bits (133), Expect = 6e-09
Identities = 34/251 (13%), Positives = 69/251 (27%), Gaps = 61/251 (24%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA-AYY---------------GNRAA 46
S ++ + + + Q +A+ + + I++ + YY A
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 47 CYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP 106
Y Y A K + P L + + G A + + +L+ DN
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122
Query: 107 AIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLN 166
AN + +YL
Sbjct: 123 -----------------------AANIFLGNYYYLT----------------------AE 137
Query: 167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226
+ ++ E L++ + A + GL + + + A N Q ++ P K
Sbjct: 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197
Query: 227 KRAKLLKAKKE 237
K ++ K
Sbjct: 198 KILRIEKEVNR 208
Score = 49.4 bits (118), Expect = 5e-07
Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 19/148 (12%)
Query: 1 ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
E+S++ E K + Y KA Y E + PN A + G AL
Sbjct: 51 EISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRM 110
Query: 61 AKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
+ + L+ + NI LG+ + + + + K L + K
Sbjct: 111 YEKILQLEADN-------LAANIFLGNY--------YYLTAEQEKKKLETDYKKLSSPTK 155
Query: 121 NFEG----ASKAFEANDYRTAMFYLDRA 144
Y A L +
Sbjct: 156 MQYARYRDGLSKLFTTRYEKARNSLQKV 183
Score = 33.2 bits (76), Expect = 0.10
Identities = 9/109 (8%), Positives = 35/109 (32%), Gaps = 19/109 (17%)
Query: 273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRC----------------KCFHA 316
+ + + + G+ +A++ + + + + +
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 317 LGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE--VKDYYKIL 362
Y + + +++ + N+ + E + + + ++ Y KIL
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 67.9 bits (167), Expect = 3e-13
Identities = 32/209 (15%), Positives = 73/209 (34%), Gaps = 36/209 (17%)
Query: 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK 221
L L R A + L + Q+P+A++ ++ A+ + + L+ P +
Sbjct: 15 LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74
Query: 222 AKETYKRAKLLKA-KKEEGNEKFVAGKNQEAFDIYTEALKID------------------ 262
++ A ++ + + G ++A + +A +++
Sbjct: 75 GY--MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG 132
Query: 263 -----------ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRC 311
A + ++ A + MG+ +EA+A ALE+ P L R
Sbjct: 133 ERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA 192
Query: 312 KCFHALGQYKECVIDAEKIYKMDNSRENH 340
G+ +E A + +++ +H
Sbjct: 193 SALLLKGKAEE----AARAAALEHHHHHH 217
Score = 66.4 bits (163), Expect = 1e-12
Identities = 44/304 (14%), Positives = 71/304 (23%), Gaps = 90/304 (29%)
Query: 1 ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
+ + + G Y L +Y AL + A+ P A + LG+ AL++
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 61 AKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMA 119
K V+ PR+ L +A L + LE
Sbjct: 62 GKTLVARTPRY-----------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104
Query: 120 KNFEGASKAFEAN-DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSI 178
+ A N Y G+ A L +A+
Sbjct: 105 SVLK---DAERVNPRYAPLHLQR------GLV-----------YALLGERDKAEASLKQA 144
Query: 179 LATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238
LA + P+ ++D A+ + L+ AP
Sbjct: 145 LAL-EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL---------------- 187
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
A+ L GK EA L
Sbjct: 188 ----------------------------------RVRYASALLLKGKAEEAARAAALEHH 213
Query: 299 KDPN 302
+
Sbjct: 214 HHHH 217
Score = 45.6 bits (109), Expect = 9e-06
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
G + + G+ A ++ ALK + ++ L+ A K+G N A+ + +
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQDPEA----LYWLARTQLKLGLVNPALENGKTLVA 67
Query: 299 KDPNYLKA 306
+ P YL
Sbjct: 68 RTPRYLGG 75
Score = 39.8 bits (94), Expect = 7e-04
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
L+ +G+Y+ A+ AL+++P +AL + LG A + K
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNP----ALENGK 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 67.1 bits (165), Expect = 3e-13
Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 20/172 (11%)
Query: 161 CLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220
A R +A + + D + D G+ +D + L APD+
Sbjct: 17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV 76
Query: 221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVL 280
K K A + + + + N N+ L
Sbjct: 77 KVA--TVLGLTYVQV----------QKYDLAVPLLIKVAEANPINFNV----RFRLGVAL 120
Query: 281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
+G+++EAI +AL PN K + +G+++E A +K
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE----ALPHFK 168
Score = 60.9 bits (149), Expect = 4e-11
Identities = 18/154 (11%), Positives = 37/154 (24%), Gaps = 20/154 (12%)
Query: 179 LATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238
+ D +G+ + AV + +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV--ALHLGIAYVKT--- 55
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
G ++ +L N+ + ++ KY+ A+ E
Sbjct: 56 -------GAVDRGTELLERSLADAPDNVKV----ATVLGLTYVQVQKYDLAVPLLIKVAE 104
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
+P R LG++ E A +K
Sbjct: 105 ANPINFNVRFRLGVALDNLGRFDE----AIDSFK 134
Score = 53.6 bits (130), Expect = 1e-08
Identities = 30/213 (14%), Positives = 55/213 (25%), Gaps = 48/213 (22%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
G + K +YS+A+ + + Y+ G + + +++ P
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 71 FSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKNFEGASKAF 129
K + L ++ + A+ K E NF
Sbjct: 75 NVK-----------------VATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN------ 111
Query: 130 EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAV 189
F L GVA L +L R EA + L
Sbjct: 112 -------VRFRL------GVA-----------LDNLGRFDEAIDSFKIALGLRPNEGKVH 147
Query: 190 FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA 222
+ + A+ HF+ +L +
Sbjct: 148 RAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
Score = 47.1 bits (113), Expect = 2e-06
Identities = 34/275 (12%), Positives = 64/275 (23%), Gaps = 98/275 (35%)
Query: 35 PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSN 94
YY ++ + G Y+ A+ + D +
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-----------------VDVALH 47
Query: 95 L-KALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT 153
L A + + ++L A D L G+
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLAD-------------APDNVKVATVL------GLT--- 85
Query: 154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLL 213
+ + A + + + N + F G+ L + D A++ F++ L
Sbjct: 86 --------YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137
Query: 214 KLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLL 273
L P+ K
Sbjct: 138 GLRPNEGKV--------------------------------------------------H 147
Query: 274 HNRATVLFKMGKYNEAIADCTLALEKDPNYLKALS 308
A +MG++ EA+ A E D L+
Sbjct: 148 RAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182
Score = 47.1 bits (113), Expect = 2e-06
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
G L ++ +A+ + A+ + PN + A Y +G + AL K A LD
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176
Query: 71 FSKGL 75
S L
Sbjct: 177 ASVEL 181
Score = 31.7 bits (73), Expect = 0.31
Identities = 3/33 (9%), Positives = 13/33 (39%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGN 43
+ ++ ++ +AL + +A + +
Sbjct: 151 AFSYEQMGRHEEALPHFKKANELDEGASVELAL 183
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 66.2 bits (161), Expect = 6e-13
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 22/123 (17%)
Query: 346 AKRLLKRSEVKDYYKILGVTK-------NASSDDIKKAYRKRALVHHPDRHTNATQAQKL 398
+ L++R +Y++ T ++K YR+ HHPD ++
Sbjct: 1 SNALVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQ--- 57
Query: 399 EQEKLFKEVGEAYGILSDPTKRSRYD----RGEDIMEDSGMGGHAGAN---LFEQHMFQT 451
+ +AY L DP +RS+Y R D+ ++ ++ L +
Sbjct: 58 -----SSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHD 112
Query: 452 YFD 454
Sbjct: 113 ELS 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 65.2 bits (159), Expect = 7e-13
Identities = 15/108 (13%), Positives = 32/108 (29%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
Y + +A + Y AA Y + + A D +A +L
Sbjct: 43 AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETM 118
+ +C + L A+ + + + D + L+ +
Sbjct: 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150
Score = 60.2 bits (146), Expect = 4e-11
Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 12/154 (7%)
Query: 203 DLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE-----GNEKFVAGKNQEAFDIYTE 257
L + + + D + T K + + + + G+ +EA +
Sbjct: 2 SLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61
Query: 258 ALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL 317
D N++ + A + ++ +A +A N + +C L
Sbjct: 62 LCIYDFYNVDY----IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117
Query: 318 GQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLK 351
+ E + + N + +A+ L
Sbjct: 118 KAPLKAKECFELVIQHSN---DEKLKIKAQSYLD 148
Score = 47.5 bits (113), Expect = 9e-07
Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 12/150 (8%)
Query: 84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDR 143
A+ DA + + LK + + D + + A +F + A +
Sbjct: 14 AVIDAINSGATLKDINAIPDDMMD------DIYSYAYDF------YNKGRIEEAEVFFRF 61
Query: 144 AMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMD 203
+ Y + A + Q+A ++ A K + VF G C
Sbjct: 62 LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPL 121
Query: 204 LAVNHFQLLLKLAPDHAKAKETYKRAKLLK 233
A F+L+++ + D + ++
Sbjct: 122 KAKECFELVIQHSNDEKLKIKAQSYLDAIQ 151
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 65.6 bits (159), Expect = 1e-12
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
+ +K +G+ + + +KK YRK LV HPD+ T Q + + +F E+ +A+
Sbjct: 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATG--QPYEQYAKMIFMELNDAWSE 172
Query: 414 LSDPTKRSRY 423
+ ++ Y
Sbjct: 173 FENQGQKPLY 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 67.8 bits (166), Expect = 2e-12
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 16/133 (12%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAIS---VCPNVA-------------AYYGNRAAC 47
+E K GNT +K + + A+K Y++ + A + N AC
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 48 YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
+ + + A+D A+ +DP +K L R+ + L + A ++LK QE+ P++ A
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342
Query: 108 IAQESKALETMAK 120
I E ++ K
Sbjct: 343 IQAELLKVKQKIK 355
Score = 67.4 bits (165), Expect = 2e-12
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 16/148 (10%)
Query: 217 PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK------------IDAR 264
D + ++ LK GN F + + A YT+ L+ A+
Sbjct: 211 VDLKDVDKILLISEDLK---NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK 267
Query: 265 NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV 324
+ + N KM + A+ C ALE DP+ KAL RR + + L +Y + +
Sbjct: 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL 327
Query: 325 IDAEKIYKMD-NSRENHNFLEEAKRLLK 351
D +K ++ + L + K+ +K
Sbjct: 328 ADLKKAQEIAPEDKAIQAELLKVKQKIK 355
Score = 43.2 bits (102), Expect = 1e-04
Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 20/168 (11%)
Query: 87 DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMF------- 139
+ S+ ++ D D + + E + KN + F++ ++ A+
Sbjct: 195 KDGSGDSHPDFPEDADVDLKDVDKILLISEDL-KNI--GNTFFKSQNWEMAIKKYTKVLR 251
Query: 140 YLDRAMDQGVASKTYKLMK---------AECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
Y++ + + KL C ++ Q A + L D N A++
Sbjct: 252 YVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALY 311
Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAP-DHAKAKETYKRAKLLKAKKE 237
R + D A+ + ++AP D A E K + +KA+K+
Sbjct: 312 RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 62.3 bits (152), Expect = 3e-11
Identities = 33/175 (18%), Positives = 54/175 (30%), Gaps = 19/175 (10%)
Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
A ++A L +D +N A VR Y D A F+ L + PD
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 219 HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ-SKLLHNRA 277
A+ L + + E+ + +AL A N+
Sbjct: 75 SAEIN--NNYGWFLCGRL---------NRPAESMAYFDKAL---ADPTYPTPYIANLNKG 120
Query: 278 TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
K G++ A A +L P + A + GQ + A+ +K
Sbjct: 121 ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD----ADYYFK 171
Score = 51.1 bits (123), Expect = 2e-07
Identities = 31/235 (13%), Positives = 64/235 (27%), Gaps = 35/235 (14%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
+ + + + Y +A +A+ P + RA Y L + A + +
Sbjct: 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL--QELDPDNPAIAQESKALETMAK 120
A+S+ P +N L+ ++A KAL
Sbjct: 67 QALSIKPDS-----------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTY 109
Query: 121 -NFEGA-----SKAFEANDYRTAMFYLDRAM----DQGVASKTYKLMKAECLAHLNRLQE 170
A + + + A YL R++ A A +L +
Sbjct: 110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF----KELARTKMLAGQLGD 165
Query: 171 AQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET 225
A + + L + A ++ +L + ++E
Sbjct: 166 ADYYFKKYQSRVEVLQADDL--LLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218
Score = 46.9 bits (112), Expect = 4e-06
Identities = 34/195 (17%), Positives = 53/195 (27%), Gaps = 23/195 (11%)
Query: 35 PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS-----KGLIRQIKCNIALGDAP 89
V+ A YM Y A + A+ DP+ + I Q L
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-----YLKVND 59
Query: 90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV 149
A+ + + + PD+ N G N +M Y D+A+
Sbjct: 60 KAQESFRQALSIKPDSAE-----------INNNYGWFLCGRLNRPAESMAYFDKALADPT 108
Query: 150 ASKTYKLM--KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVN 207
Y K C A + A+ LA Q P A ++ A
Sbjct: 109 YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168
Query: 208 HFQLLLKLAPDHAKA 222
+F+
Sbjct: 169 YFKKYQSRVEVLQAD 183
Score = 38.8 bits (91), Expect = 0.002
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY 286
K ++ K + E ++A +ALK D +N RA + +
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAW----LVRAEIYQYLKVN 58
Query: 287 NEAIADCTLALEKDPNYLKAL 307
++A AL P+ +
Sbjct: 59 DKAQESFRQALSIKPDSAEIN 79
Score = 36.1 bits (84), Expect = 0.016
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
A + Y +A A AL+ DP A R + + L + A++ ++
Sbjct: 13 QLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK----AQESFR 66
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 58.6 bits (143), Expect = 5e-11
Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE 241
QNP+ ++ G+ Y +++ F+ ++L P+ +K + K L
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYW--LMKGKALYNL------ 53
Query: 242 KFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301
+ +EA D Y + + N + +A L + + +
Sbjct: 54 ----ERYEEAVDCYNYVINVIEDEYN--KDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107
Query: 302 NY 303
++
Sbjct: 108 HH 109
Score = 55.5 bits (135), Expect = 5e-10
Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
G ++ AG E+ D++ +A+++D + L+ + +Y EA+ +
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKY----WLMKGKALYNLERYEEAVDCYNYVIN 68
Query: 299 --KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
+D + + + + AE K++
Sbjct: 69 VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106
Score = 53.6 bits (130), Expect = 3e-09
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVI 325
++ N + + + + G Y E+I A++ DP K + K + L +Y+E V
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 326 DAEK 329
Sbjct: 62 CYNY 65
Score = 52.1 bits (126), Expect = 1e-08
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPN--VAAYYGNRAACYMMLGMYTYALDDAKLAVSLD 68
G Y L++Y +A+ CY+ I+V + + +A + + A+ L+
Sbjct: 47 GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106
Query: 69 PRF 71
Sbjct: 107 HHH 109
Score = 47.1 bits (113), Expect = 5e-07
Identities = 13/69 (18%), Positives = 32/69 (46%)
Query: 1 ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
+ + E++ +G QY Y++++ + +AI + P + Y+ + L Y A+D
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 61 AKLAVSLDP 69
+++
Sbjct: 63 YNYVINVIE 71
Score = 29.3 bits (67), Expect = 0.84
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 158 KAECLAHLNRLQEAQEIANSILA--TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL 215
K + L +L R +EA + N ++ D+ N D + L Y + ++ + KL
Sbjct: 46 KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
Query: 216 APDHA 220
H
Sbjct: 106 EHHHH 110
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 60.0 bits (146), Expect = 2e-10
Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 26/208 (12%)
Query: 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK 221
++A+ L D + DA + + + LA ++ L +A+
Sbjct: 47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR 106
Query: 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ-SKLLHNRATVL 280
Y G + + +EA+ EA + S++ N V
Sbjct: 107 VLNNY------------GGFLYEQKRYEEAYQRLLEAS---QDTLYPERSRVFENLGLVS 151
Query: 281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIY------KMD 334
+M K +A +L + N + +Y A + Y
Sbjct: 152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP----ARQYYDLFAQGGGQ 207
Query: 335 NSRENHNFLEEAKRLLKRSEVKDYYKIL 362
N+R + AK R Y L
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQL 235
Score = 58.4 bits (142), Expect = 8e-10
Identities = 31/239 (12%), Positives = 75/239 (31%), Gaps = 33/239 (13%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
+ + + + G + +A +A+ + P+ A + A + A ++ +
Sbjct: 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYR 95
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAK- 120
A++ D R +N L E A + +A +
Sbjct: 96 KALASDSRN-----------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP 138
Query: 121 NFEGA-----SKAFEANDYRTAMFYLDRAM----DQGVASKTYKLMKAECLAHLNRLQEA 171
+ + A Y ++++ +Q + L A+ L A
Sbjct: 139 ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA----LEMADLLYKEREYVPA 194
Query: 172 QEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK 230
++ + QN ++ + + D A ++ L +L P + +E ++ K
Sbjct: 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE-FQAEK 252
Score = 42.6 bits (101), Expect = 1e-04
Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 12/130 (9%)
Query: 207 NHFQLLLKLAPDHAKAKETYKRAKL----LKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262
+H L H + K K A + G G ++A +AL+ID
Sbjct: 8 HHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID 67
Query: 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
+ + + A V + A + AL D + L+ + +Y+E
Sbjct: 68 PSSADAH----AALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123
Query: 323 CVIDAEKIYK 332
A +
Sbjct: 124 ----AYQRLL 129
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 60.2 bits (146), Expect = 6e-10
Identities = 22/176 (12%), Positives = 50/176 (28%), Gaps = 9/176 (5%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
+ + + + +++ P + A + A P
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89
Query: 71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
+ G A A + +L P+ P I + + +A +
Sbjct: 90 HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL----LNWRRRLCDWRALD 145
Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
+ + A+ QGV + +E + +L A+ A +I A+ +
Sbjct: 146 VLSAQ-----VRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLA 196
Score = 59.1 bits (143), Expect = 2e-09
Identities = 16/158 (10%), Positives = 34/158 (21%), Gaps = 17/158 (10%)
Query: 203 DLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262
+ + ++ P A A G L +
Sbjct: 6 PRELLQLRAAVRHRPQDFVAW--LMLADAELG----------MGDTTAGEMAVQRGLALH 53
Query: 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
+ + V + ++ EA A + P + GQ +
Sbjct: 54 PGHPE----AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEA 109
Query: 323 CVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKDYY 359
+ +++ L +R L D
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL 147
Score = 58.3 bits (141), Expect = 2e-09
Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 13/178 (7%)
Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
D + L A+ LM A+ + + LA +P+AV
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
G + + A Q AP+H L+ AG+ +
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA--LWLGHALED----------AGQAEA 109
Query: 251 AFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALS 308
A YT A ++ I ++LL+ R L + A A+ + ++ +
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDWRALDVLSAQVRAAVAQGVGAVEPFA 166
Score = 57.9 bits (140), Expect = 4e-09
Identities = 13/121 (10%), Positives = 30/121 (24%), Gaps = 15/121 (12%)
Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
+ A++ ++ A MG L P +
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFV----AWLMLADAELGMGDTTAGEMAVQRGLALHPGH 56
Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFL----------EEAKRLLKR 352
+A++R + ++ E + ++ +L E A R
Sbjct: 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116
Query: 353 S 353
+
Sbjct: 117 A 117
Score = 55.6 bits (134), Expect = 2e-08
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 2/113 (1%)
Query: 19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQ 78
+ L A+ P + A + +G T + ++L P + + R
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 79 IKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETMAKNFEGASKAFE 130
+ A L+ + P++P ALE A E A+ A+
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYT 115
Score = 46.4 bits (110), Expect = 1e-05
Identities = 12/107 (11%), Positives = 25/107 (23%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
E G ++ +++++A +A P G A
Sbjct: 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQ 110
A L P + + L D ++ +
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 55.0 bits (132), Expect = 8e-10
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRH--TNATQAQKLEQEKLFKEVGEAY 411
+K + + + ++K+Y++ L+ HPD+ A+ QK EK+F+ + EA+
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW 97
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 56.6 bits (137), Expect = 2e-09
Identities = 21/172 (12%), Positives = 51/172 (29%), Gaps = 13/172 (7%)
Query: 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL 297
EG + A D ++ + +S++ N + + EA T ++
Sbjct: 12 EGVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI 64
Query: 298 EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKD 357
+D + A +R ++ +Y + D ++ + ++ + +
Sbjct: 65 NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124
Query: 358 Y-----YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLF 404
Y Y K A + A ++ H K + +
Sbjct: 125 YNIAFMYAKKEEWKKAEE-QLALATSMKSEPRHSKIDKAMECVWKQKLYEPV 175
Score = 49.3 bits (118), Expect = 5e-07
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
G LK ++A K ++ +I+ ++A Y R Y Y A+ D K A+
Sbjct: 44 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103
Query: 71 ------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116
GL ++ L + + + ++ A Q + A
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK------AEEQLALATS 149
Score = 48.6 bits (116), Expect = 1e-06
Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 9/154 (5%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
G K + AL +S + N Y +L T A +++ D
Sbjct: 13 GVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69
Query: 71 FSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKNFEG----A 125
+ ++ A +L +AL +L N I + L+ E A
Sbjct: 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIA 128
Query: 126 SKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA 159
+ +++ A L A + K+ KA
Sbjct: 129 FMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162
Score = 42.0 bits (99), Expect = 1e-04
Identities = 34/189 (17%), Positives = 59/189 (31%), Gaps = 40/189 (21%)
Query: 116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIA 175
E ++ EG A + D++ A+ D S+ L + EA++
Sbjct: 5 EAISLWNEGVL-AADKKDWKGALDAFSAVQDPH--SRIC-FNIGCMYTILKNMTEAEKAF 60
Query: 176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL-LLKLAPDHAKAKETYKRAKLLKA 234
+ DK A F RG+ Y +K DLA+ + L++L + YK L
Sbjct: 61 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID---YKILGLQFK 117
Query: 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294
++L+N A + K ++ +A
Sbjct: 118 LF--------------------------------ACEVLYNIAFMYAKKEEWKKAEEQLA 145
Query: 295 LALEKDPNY 303
LA
Sbjct: 146 LATSMKSEP 154
Score = 30.5 bits (69), Expect = 1.0
Identities = 26/203 (12%), Positives = 46/203 (22%), Gaps = 37/203 (18%)
Query: 38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR--FSKGLIRQIKCNIALGDAPTARSNL 95
A N + ALD R F+ G + L + A
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYT-----ILKNMTEAEKAF 60
Query: 96 KALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYK 155
D +A G ++ Y A+ L A+ Q
Sbjct: 61 TRSINRDKHLA-----------VAYFQRGMLY-YQTEKYDLAIKDLKEALIQ-------- 100
Query: 156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL 215
R + + L + ++ ++ A L +
Sbjct: 101 ----------LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150
Query: 216 APDHAKAKETYKRAKLLKAKKEE 238
+ +K + K K E
Sbjct: 151 KSEPRHSKIDKAMECVWKQKLYE 173
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 51.9 bits (124), Expect = 6e-09
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
+K +G+ + + +KK YRK LV HP + T Q + + +F E+ +A+ +
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATG--QPYEQYAKMIFMELNDAWSEFEN 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 1e-08
Identities = 74/528 (14%), Positives = 152/528 (28%), Gaps = 145/528 (27%)
Query: 69 PRFSKGLIRQIKCNIALGDAPTARSNLKALQELD-----PDNPAIAQESKALETMAKNFE 123
F + C D P +S L +E+D D ++ + T+ E
Sbjct: 23 SVFEDAFVDNFDCKDVQ-DMP--KSILSK-EEIDHIIMSKDA--VSGTLRLFWTLLSKQE 76
Query: 124 GASKAF----EANDY----------------RTAMF--YLDRAMDQGVASKTYKLMKAEC 161
+ F +Y T M+ DR + Y + + +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 162 LAHLNR-LQEAQEIAN-----------SILATD--------KQNPDAVF---VRGLCLYY 198
L + L E + N + +A D + +F + C
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSP 195
Query: 199 DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA 258
+ +++ LL ++ P+ + KL + + + K Y
Sbjct: 196 ETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP------YENC 246
Query: 259 LKI-----DARNI---NINSKLL-----HNRATVLFKMGKYNEAIADCTLALEKD----- 300
L + +A+ N++ K+L L + ++ ++ L D
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 301 -PNYL----KALSRR-CKCF-HALGQYKECVIDAEKI---YKMDNSRENHNFLEEAKRLL 350
YL + L R L E + D +K N + +E + +L
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 351 KRSEVKDYYKILGV-------------------TKNASSDDIKKAYRKRALVHHPDRHTN 391
+ +E + + L V K+ + K ++ + P T
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 392 -------ATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMED---SGMGGH-AG 440
+ + + L + + + Y I P D ++ S +G H
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNI---PKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 441 ANLFEQ-HMFQT-YFD------------PGCRARGSNV----RFQYYQ 470
E+ +F+ + D A GS + + ++Y+
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Score = 56.4 bits (135), Expect = 1e-08
Identities = 64/477 (13%), Positives = 136/477 (28%), Gaps = 134/477 (28%)
Query: 14 QYKLKQYSKALKCYSEAISVCPN----VAAYYGNRAACYMMLGMYTYALDDAK------- 62
+ + +Q S + Y E N A Y +R Y+ L L AK
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 63 -------LA--VSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQEL----DPDNPAIA 109
+A V L + + +I + L + + + L+ LQ+L DP+ + +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 110 QESKALETMAKNFEGA-SKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL 168
S ++ + + + ++ Y + L + +K + C
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN----AKAWNAFNLSC------- 266
Query: 169 QEAQEIANSILAT--DKQNPDAVFVRGLC----------LYYDDKMDL------------ 204
IL T KQ D + L D+ L
Sbjct: 267 --------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 205 ---AVNHFQLLLKLAP----DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDI--Y 255
+ L + D + +K + K E + E +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWK--HVNCDKLTTIIESSL--NVLEPAEYRKM 374
Query: 256 TEALKIDARNININSKLLHNRATVLFKMGKYNEA---IADCT--LALEKDPN----YLKA 306
+ L + + +I + LL ++++ ++ + +EK P + +
Sbjct: 375 FDRLSVFPPSAHIPTILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 307 LSRRCKCFHALGQYK--ECVIDAEKIYKMDNSRENHNF----------------LEEAKR 348
+ K +Y ++D Y + + ++ + L+ +
Sbjct: 431 IYLELKV-KLENEYALHRSIVDH---YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 349 LLKRSEVKDYY--------KI--LGVTKNASSD------DIKKAYRKRALVHHPDRH 389
+ + + + KI NAS +K Y+ + P
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPKYE 542
Score = 52.2 bits (124), Expect = 3e-07
Identities = 60/411 (14%), Positives = 126/411 (30%), Gaps = 104/411 (25%)
Query: 1 ELSAEKHKEDGNTQYKLKQYSKALK-----CYSEAISV----CP--------NVAAYYGN 43
+L + + K K Y L ++A + C V +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 44 RAACYMMLGMYTYALDDAK----LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQ 99
++ L ++ L + L LD R L R++ P L +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREV-LTTN----PRR---LSIIA 334
Query: 100 ELDPDNPAIAQESK--ALETMAKNFEGASKAFEANDYRTAMFYLDRAM---DQGVASKTY 154
E D A K + + E + E +YR + ++ + +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFPPSAHIPTILL 392
Query: 155 KL----MKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY----DDKMDL-- 204
L + + + ++ L + + + + L +++ L
Sbjct: 393 SLIWFDVIKSDVMVV-----VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 205 -AVNHFQLLLKLAPD-----------------HAKAKETYKRAKLLKAKKEEGNEKFVAG 246
V+H+ + D H K E +R L + + +F+
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLEQ 505
Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY--- 303
K ++ D+ N + +L+ L ++ Y I D DP Y
Sbjct: 506 K-----------IRHDSTAWNASGSILN----TLQQLKFYKPYICD------NDPKYERL 544
Query: 304 LKALSRRCKCFHALGQYKECVIDAE--KIYKMDNSRENHNFLEEAKRLLKR 352
+ A+ F L + +E +I ++ + ++ E+ EEA + ++R
Sbjct: 545 VNAILD----F--LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 52.8 bits (128), Expect = 1e-08
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246
+A + G Y D A+ ++Q L+L P A+A Y + G
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW--YNLGNAYYKQ----------G 49
Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306
EA + Y +AL++D R+ ++ +N +K G Y+EAI ALE DP +A
Sbjct: 50 DYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Query: 307 LSRRCKCFHALGQYKECVIDAEKIYK 332
++ G Y E A + Y+
Sbjct: 106 WYNLGNAYYKQGDYDE----AIEYYQ 127
Score = 50.5 bits (122), Expect = 7e-08
Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 16/141 (11%)
Query: 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK 221
EA E L D ++ +A + G Y D A+ ++Q L+L P A+
Sbjct: 11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70
Query: 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF 281
A Y + G EA + Y +AL++D R+ +N +
Sbjct: 71 AW--YNLGNAYYKQ----------GDYDEAIEYYQKALELDPRSAEA----WYNLGNAYY 114
Query: 282 KMGKYNEAIADCTLALEKDPN 302
K G Y+EAI ALE DP
Sbjct: 115 KQGDYDEAIEYYQKALELDPR 135
Score = 47.0 bits (113), Expect = 9e-07
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
GN YK Y +A++ Y +A+ + P A + N Y G Y A++ + A+ LDPR
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 71 F 71
Sbjct: 102 S 102
Score = 47.0 bits (113), Expect = 9e-07
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
AE GN YK Y +A++ Y +A+ + P A + N Y G Y A++ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 64 AVSLDPRF 71
A+ LDPR
Sbjct: 61 ALELDPRS 68
Score = 32.4 bits (75), Expect = 0.097
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK 221
EA E L D ++ +A + G Y D A+ ++Q L+L P A+
Sbjct: 45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104
Query: 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN 265
A Y + G EA + Y +AL++D R+
Sbjct: 105 AW--YNLGNAYYKQ----------GDYDEAIEYYQKALELDPRS 136
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 71
Score = 50.0 bits (120), Expect = 2e-08
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 355 VKDYYKILGVTKNASS-DDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
K+ +IL +T+N + +K+ +RK L +HPD+ + L ++ EA
Sbjct: 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS---------PFLATKINEAKDF 63
Query: 414 LSDPTKR 420
L
Sbjct: 64 LEKRGIS 70
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 51.0 bits (122), Expect = 8e-08
Identities = 17/137 (12%), Positives = 45/137 (32%), Gaps = 13/137 (9%)
Query: 166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET 225
+ + + + QN + + G + + ++ ++ L+L ++A+
Sbjct: 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA 83
Query: 226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK 285
+A + + + +AL +D+ I L A+ F
Sbjct: 84 LATVLYYQASQHM---------TAQTRAMIDKALALDSNEITA----LMLLASDAFMQAN 130
Query: 286 YNEAIADCTLALEKDPN 302
Y +AI ++ +
Sbjct: 131 YAQAIELWQKVMDLNSP 147
Score = 46.0 bits (109), Expect = 5e-06
Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 10/161 (6%)
Query: 87 DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEG----ASKAFEANDYRTAMFYLD 142
+ R L + + +N E NDY ++
Sbjct: 9 EYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYR 68
Query: 143 RAMDQGVASKTYKLMKAECLAHLN---RLQEAQEIANSILATDKQNPDAVFVRGLCLYYD 199
+A+ + A L + + + + + LA D A+ + +
Sbjct: 69 QALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ 128
Query: 200 DKMDLAVNHFQLLLKLAPDHAKAK---ETYKRAKLLKAKKE 237
A+ +Q ++ L E+ AKLL+ + +
Sbjct: 129 ANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSD 169
Score = 42.2 bits (99), Expect = 1e-04
Identities = 23/178 (12%), Positives = 56/178 (31%), Gaps = 18/178 (10%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
++ ++ + + L+ + I P + + Y+ Y+ +L +
Sbjct: 10 YQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQ 69
Query: 64 AVSLDPRFSKGLIRQIKCNIALGD---APTARSNLKALQELDPDNPAIAQESKALETMAK 120
A+ L ++ R+ + LD + AL +A
Sbjct: 70 ALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI------TALMLLAS 123
Query: 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVA-SKTYKLMKAECLAHLNRLQEAQEIANS 177
+ AF +Y A+ + MD +L+++ + LQ ++ +
Sbjct: 124 D------AFMQANYAQAIELWQKVMDLNSPRINRTQLVES--INMAKLLQRRSDLEHH 173
Score = 40.6 bits (95), Expect = 3e-04
Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 23/168 (13%)
Query: 199 DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA 258
+ + Q ++ P +++ LL G + Y +A
Sbjct: 23 QQNPEAQLQALQDKIRANPQNSEQ------WALL------GEYYLWQNDYSNSLLAYRQA 70
Query: 259 LKIDARNININSKLLHNRATVLFKMGKYN---EAIADCTLALEKDPNYLKALSRRCKCFH 315
L++ N + ATVL+ + + A AL D N + AL
Sbjct: 71 LQLRGENAEL----YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126
Query: 316 ALGQYKECVIDAEKIYKMDNSRENH----NFLEEAKRLLKRSEVKDYY 359
Y + + +K+ +++ R N + AK L +RS+++ ++
Sbjct: 127 MQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHHH 174
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 48.5 bits (117), Expect = 2e-07
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 16/127 (12%)
Query: 192 RGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEA 251
G Y D A+ ++Q L+L P++A+A Y + G EA
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAW--YNLGNAYYKQ----------GDYDEA 62
Query: 252 FDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRC 311
+ Y +AL++D N +N +K G Y+EAI ALE DPN +A
Sbjct: 63 IEYYQKALELDPNNAEA----WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Query: 312 KCFHALG 318
G
Sbjct: 119 NAKQKQG 125
Score = 47.8 bits (115), Expect = 4e-07
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
G EA + Y +AL++D N +N +K G Y+EAI ALE DPN +
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEA----WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78
Query: 306 ALSRRCKCFHALGQYKECVIDAEKIYK 332
A ++ G Y E A + Y+
Sbjct: 79 AWYNLGNAYYKQGDYDE----AIEYYQ 101
Score = 46.6 bits (112), Expect = 1e-06
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
GN YK Y +A++ Y +A+ + PN A + N Y G Y A++ + A+ LDP
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Query: 71 FSK 73
++
Sbjct: 110 NAE 112
Score = 43.9 bits (105), Expect = 8e-06
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
GN YK Y +A++ Y +A+ + PN A + N Y G Y A++ + A+ LDP
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 71 FSK 73
++
Sbjct: 76 NAE 78
Score = 40.5 bits (96), Expect = 2e-04
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
N +K G Y+EAI ALE DPN +A ++ G Y E A + Y+
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE----AIEYYQ 67
Score = 37.0 bits (87), Expect = 0.002
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG 52
GN YK Y +A++ Y +A+ + PN A N G
Sbjct: 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 48.7 bits (115), Expect = 4e-07
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 19/123 (15%)
Query: 236 KEEGNEKFVAGKNQEAFDIYTEALKIDAR--------NININSKLLHNRATVLFKMGKYN 287
+ + VAG+ EA A++I + ++ A L + ++
Sbjct: 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD 74
Query: 288 EAIADCTLALEKDPN-----------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336
EA+ AL ++ A+ R LG+ E + + +K+ +M
Sbjct: 75 EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134
Query: 337 REN 339
R+
Sbjct: 135 RKG 137
Score = 37.2 bits (85), Expect = 0.003
Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 7/121 (5%)
Query: 190 FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQ 249
+ D A + + ++++ +
Sbjct: 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD 74
Query: 250 EAFDIYTEALKIDARNININS-------KLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
EA +AL R +N +++RA L +G+ EA+ + +E
Sbjct: 75 EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134
Query: 303 Y 303
Sbjct: 135 R 135
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 46.9 bits (112), Expect = 5e-07
Identities = 13/91 (14%), Positives = 33/91 (36%)
Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328
+ + A K + A+A +E DP+Y+ K + L + + +
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 329 KIYKMDNSRENHNFLEEAKRLLKRSEVKDYY 359
+ ++ L E + ++E +++
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96
Score = 39.2 bits (92), Expect = 3e-04
Identities = 11/61 (18%), Positives = 19/61 (31%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
K S+AL + E + P+ Y + Y L A+D + +
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
Query: 71 F 71
Sbjct: 74 E 74
Score = 34.2 bits (79), Expect = 0.017
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
++P + D A+ F+ L++ PD+ Y KL +
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT--YYHLGKLYERL-------- 54
Query: 244 VAGKNQEAFDIYTEALKIDARNIN 267
+ +A D Y + +++
Sbjct: 55 --DRTDDAIDTYAQGIEVAREEGT 76
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 50.1 bits (119), Expect = 9e-07
Identities = 36/275 (13%), Positives = 87/275 (31%), Gaps = 28/275 (10%)
Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKM-DLAVNHFQLLLKLA 216
L R + A ++ + + N R + L K +N+ +++
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162
Query: 217 PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNR 276
P + + + R L++ + + + L DA+N + +R
Sbjct: 163 PKNYQV--WHHRRVLVEW----------LRDPSQELEFIADILNQDAKNYHA----WQHR 206
Query: 277 ATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336
V+ + ++ + L++D ++R Y + + ++
Sbjct: 207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 266
Query: 337 ----RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNA 392
N + K +L+ + Y +L + Y LV D + +
Sbjct: 267 IKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLV---DIYEDM 322
Query: 393 TQAQKLEQEKLFKEVGEAYGILS---DPTKRSRYD 424
+ Q +E + + E IL+ D ++ +
Sbjct: 323 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWR 357
Score = 48.9 bits (116), Expect = 2e-06
Identities = 20/148 (13%), Positives = 50/148 (33%), Gaps = 15/148 (10%)
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246
D L D++ + A + ++L + + R LLK+ +++
Sbjct: 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT--VWHFRRVLLKSLQKD-------- 147
Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306
E + T ++ +N + H+R ++ + ++ + L +D A
Sbjct: 148 -LHEEMNYITAIIEEQPKNYQV----WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202
Query: 307 LSRRCKCFHALGQYKECVIDAEKIYKMD 334
R + + +++ K D
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKED 230
Score = 43.5 bits (102), Expect = 8e-05
Identities = 36/323 (11%), Positives = 78/323 (24%), Gaps = 68/323 (21%)
Query: 30 AISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP 89
I Y A A + A+ L+ + +L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--- 145
Query: 90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV 149
K L E + + E K ++ +R
Sbjct: 146 ------KDLHE-------------EMNYITAIIEEQPKNYQVWHHR-------------- 172
Query: 150 ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHF 209
+ L + E IL D +N A R + D + +
Sbjct: 173 ---------RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223
Query: 210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ 269
LLK + +R ++ + + + E +K+ N +
Sbjct: 224 DQLLKEDVRNNSVW--NQRYFVISNTTGYNDRAVL----EREVQYTLEMIKLVPHNES-- 275
Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
N + + ++ L+ P++ + + ++D +
Sbjct: 276 ---AWNYLKGILQDRGLSKYPNLLNQLLDLQPSH--------SSPYLI----AFLVDIYE 320
Query: 330 IYKMDNSRENHNFLEEAKRLLKR 352
+ + L +A L +
Sbjct: 321 DMLENQCDNKEDILNKALELCEI 343
Score = 42.8 bits (100), Expect = 2e-04
Identities = 35/300 (11%), Positives = 78/300 (26%), Gaps = 62/300 (20%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGM-YTYALDDAKLAVSLDP 69
+ ++ +A K +AI + + R L ++ + P
Sbjct: 104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163
Query: 70 RFSKGLI-RQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA 128
+ + R++ ++ L + + + L AKN
Sbjct: 164 KNYQVWHHRRV-----------------LVEWLRDPSQELEFIADILNQDAKN------- 199
Query: 129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDA 188
+ A +R + + + +L D +N
Sbjct: 200 YHAWQHR-----------------------QWVIQEFKLWDNELQYVDQLLKEDVRNNSV 236
Query: 189 VFVRGLCLY------YDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK 242
R + ++ V + ++KL P + A +L+ +
Sbjct: 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA--WNYLKGILQDRGLSKYPN 294
Query: 243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT-LALEKDP 301
+ + D+ ++ K N+A+ C LA EKD
Sbjct: 295 LL----NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 46.2 bits (110), Expect = 1e-06
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
G +A Y +A+ + ++ ++ + +G+Y +A A +++ PN+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDL-AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 306 ALSRRCKCFHALGQYKE 322
+ LG+Y++
Sbjct: 63 LRVFYAMVLYNLGRYEQ 79
Score = 42.4 bits (100), Expect = 3e-05
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 3/107 (2%)
Query: 17 LKQYSKALKCYSEAISVC---PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSK 73
L ++A+ Y +AI+ ++A Y + + LG Y A V P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
+ LG L + D+ I +A+ A
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYAD 109
Score = 42.0 bits (99), Expect = 3e-05
Identities = 13/59 (22%), Positives = 21/59 (35%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP 69
G+T L +Y KA + + PN A A LG Y ++ ++
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
Score = 41.6 bits (98), Expect = 5e-05
Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 218 DHAKAKETYKRAKLLKAKKEE--------GNEKFVAGKNQEAFDIYTEALKIDARNININ 269
A+A Y++A + ++ G+ G+ ++A + +K + +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL- 63
Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPN------YLKALS 308
A VL+ +G+Y + + + + + Y +A+
Sbjct: 64 ---RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAIL 105
Score = 37.0 bits (86), Expect = 0.002
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 283 MGKYNEAIADCTLALE---KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRE 338
+G +A+ A+ + + + F LG+Y++ K N +
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 339 NHNFLEEAKRLLKRSE--VKDYYKILGVTKNASSDDIKKAYRKRALVHHPD 387
F L R E V+ KI+ T S D+ ++Y++ A++ + D
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAET---SDDETIQSYKQ-AILFYAD 109
Score = 33.9 bits (78), Expect = 0.029
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
L ++A+ + + + + + LY + + V ++ D
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
Query: 219 HAKAKETYKRAKLLKAKK 236
+ YK+A L A K
Sbjct: 94 DETIQS-YKQAILFYADK 110
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 45.8 bits (109), Expect = 2e-06
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 8/84 (9%)
Query: 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALS 308
Q + L N L + +++ A+ AL+ DP Y A
Sbjct: 2 QAITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWK 57
Query: 309 RRCKCFHALGQYKECVIDAEKIYK 332
K G A + ++
Sbjct: 58 WLGKTLQGQGDRAG----ARQAWE 77
Score = 39.6 bits (93), Expect = 2e-04
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 12/98 (12%)
Query: 168 LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYK 227
+Q E ++LA N F G ++ D A+ H + L P ++ A
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA--WKW 58
Query: 228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN 265
K L+ G A + L
Sbjct: 59 LGKTLQG----------QGDRAGARQAWESGLAAAQSR 86
Score = 38.1 bits (89), Expect = 0.001
Identities = 12/83 (14%), Positives = 22/83 (26%)
Query: 23 ALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN 82
+ ++ + Y + AL + A+ DP +S K
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 83 IALGDAPTARSNLKALQELDPDN 105
GD AR ++
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSR 86
Score = 35.0 bits (81), Expect = 0.009
Identities = 9/60 (15%), Positives = 18/60 (30%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
G T + +Q+ AL A+ P + + G A + ++
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85
Score = 27.3 bits (61), Expect = 5.4
Identities = 12/81 (14%), Positives = 20/81 (24%)
Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
+ A + A + L D A G L A ++ L A
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85
Query: 219 HAKAKETYKRAKLLKAKKEEG 239
+ + L+ E
Sbjct: 86 RGDQQVVKELQVFLRRLARED 106
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 45.9 bits (109), Expect = 2e-06
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 16/119 (13%)
Query: 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV 244
+ GL + + A F+ + + P+ +A
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAW--RSLGLTQAE---------- 63
Query: 245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
K+ A A +D ++I + A N A+A L P Y
Sbjct: 64 NEKDGLAIIALNHARMLDPKDIAV----HAALAVSHTNEHNANAALASLRAWLLSQPQY 118
Score = 44.8 bits (106), Expect = 4e-06
Identities = 11/62 (17%), Positives = 23/62 (37%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
G TQ + ++ A+ + A + P A + A + AL + + P+
Sbjct: 58 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
Query: 71 FS 72
+
Sbjct: 118 YE 119
Score = 44.0 bits (104), Expect = 1e-05
Identities = 17/107 (15%), Positives = 33/107 (30%)
Query: 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDA 61
+ E E+G + KL ++A + P + + A+
Sbjct: 15 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74
Query: 62 KLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI 108
A LDP+ + +A A ++L+A P +
Sbjct: 75 NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121
Score = 39.4 bits (92), Expect = 4e-04
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 12/107 (11%)
Query: 156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL 215
+ + + L L EA ++ + + +A GL ++K LA+ L
Sbjct: 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80
Query: 216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262
P A L + E N A L
Sbjct: 81 DPKDIAV-----HAALAVSHTNEHNA-------NAALASLRAWLLSQ 115
Score = 34.0 bits (78), Expect = 0.025
Identities = 7/58 (12%), Positives = 15/58 (25%)
Query: 265 NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
N + + + K+ EA +K+P +A +
Sbjct: 12 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGL 69
Score = 32.0 bits (73), Expect = 0.12
Identities = 12/119 (10%), Positives = 30/119 (25%), Gaps = 8/119 (6%)
Query: 102 DPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC 161
+ +NP + E+ E + + A + + +
Sbjct: 9 EANNPYMYHEN--------PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLT 60
Query: 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220
A + A N D ++ + + + A+ + L P +
Sbjct: 61 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 43.9 bits (104), Expect = 7e-06
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296
+ E G + A E L+ + + + K+G + +A+ + A
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSA 61
Query: 297 LEKDPNYLKALSRR 310
+E +P+ +R+
Sbjct: 62 IELNPDSPALQARK 75
Score = 40.4 bits (95), Expect = 9e-05
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 9 EDGNTQYKLKQYSKALKCYSEAISVCPNVAAY-YGNRAACYMMLGMYTYALDDAKLAVSL 67
+ AL+ E + P Y Y LG + AL++ + A+ L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 68 DPRF 71
+P
Sbjct: 65 NPDS 68
Score = 32.7 bits (75), Expect = 0.044
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNR 44
GN KL + KAL Y AI + P+ A +
Sbjct: 42 GNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75
Score = 30.0 bits (68), Expect = 0.40
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFV-RGLCLYYDDKMDLAVNHFQLLLKLA 216
+ L + ++ A + L T+ D + G A+N++Q ++L
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65
Query: 217 PDHAKAK 223
PD +
Sbjct: 66 PDSPALQ 72
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 47.0 bits (111), Expect = 8e-06
Identities = 17/173 (9%), Positives = 52/173 (30%), Gaps = 12/173 (6%)
Query: 167 RLQEAQEIANSILATDKQNPDAV--FVRGLCLYYD---DKMDLAVNHFQLLLKLAPDHAK 221
Q + ++ + F + ++ A +++ +P+
Sbjct: 175 NQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234
Query: 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF 281
A+ +++ + +EK + + + +N S + +A
Sbjct: 235 ARAEKALVDIVRHSQHPLDEK----QLAALNTEIDNIVTLP--ELNNLSIIYQIKAVSAL 288
Query: 282 KMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
GK +E+ ++ + ++L K + G +E + +
Sbjct: 289 VKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLR 340
Score = 39.7 bits (92), Expect = 0.002
Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 23/146 (15%)
Query: 166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYY--------DDKMDLAVNHFQLLLKLAP 217
L A E+ I+ + + A + L + ++ ++ L
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRA 277
+ + +A V GK E++ + ++ +N
Sbjct: 273 LNNLSIIYQIKAVSA----------LVKGKTDESYQAINTGIDLEMSWLN-----YVLLG 317
Query: 278 TVLFKMGKYNEAIADCTLALEKDPNY 303
V G EA A P
Sbjct: 318 KVYEMKGMNREAADAYLTAFNLRPGA 343
Score = 39.3 bits (91), Expect = 0.002
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
+ ++ + + ++ + + I + + Y Y M GM A D
Sbjct: 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYV-LLGKVYEMKGMNREAADAYL 334
Query: 63 LAVSLDP 69
A +L P
Sbjct: 335 TAFNLRP 341
Score = 37.8 bits (87), Expect = 0.007
Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 3/130 (2%)
Query: 91 ARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA 150
A L + + P+ A+ KAL + ++ + + T + + +
Sbjct: 218 ASELLGEIVQSSPEF-TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL 276
Query: 151 SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQ 210
S Y++ A + E+ + N+ + + + + G A + +
Sbjct: 277 SIIYQIK-AVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYL 334
Query: 211 LLLKLAPDHA 220
L P
Sbjct: 335 TAFNLRPGAN 344
Score = 35.8 bits (82), Expect = 0.026
Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 11/127 (8%)
Query: 14 QYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTY--------ALDDAKLAV 65
K ++A + E + P +A ++ + V
Sbjct: 209 HGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268
Query: 66 SLDPRFSKGLIRQIKCNIAL--GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
+L + +I QIK AL G + + +L+ K E M
Sbjct: 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYE-MKGMNR 327
Query: 124 GASKAFE 130
A+ A+
Sbjct: 328 EAADAYL 334
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 1e-05
Identities = 41/190 (21%), Positives = 65/190 (34%), Gaps = 33/190 (17%)
Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKA--L----QELDPDNPAIAQESKALET 117
A L +F+K L + A D PT + L L ++P + Q + L
Sbjct: 30 ASQLQEQFNKILPEPTE-GFAADDEPTTPAELVGKFLGYVSSLVEPSK--VGQFDQVLNL 86
Query: 118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA--ECLAHLNRLQEAQEIA 175
FE + E ND L + D + KT +L+K R + +
Sbjct: 87 CLTEFE--NCYLEGNDIHALAAKLLQENDTTLV-KTKELIKNYITARIMAKR--PFDKKS 141
Query: 176 NSIL---ATDK----------Q-NPDAVF--VRGL-CLYYDDKMDLAVNHFQLLLKLAPD 218
NS L + Q N D F +R L Y+ DL + L +L
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 219 HAKAKETYKR 228
A++ + +
Sbjct: 202 TLDAEKVFTQ 211
Score = 42.3 bits (99), Expect = 3e-04
Identities = 36/265 (13%), Positives = 83/265 (31%), Gaps = 97/265 (36%)
Query: 177 SILATDKQNPDAVFV-----RGLCLY-------YDDKMDLAVNHFQLLLKLAPDHAKAKE 224
SIL NP + + +G + ++ +D + ++ ++ +
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI--NEHSTSY 1717
Query: 225 TYK--RAKL-----------------LKAKKEEGN---EKFVAGKNQ----EAFDIYTEA 258
T++ + L + K +G + AG E Y A
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG---HSLGE----YA-A 1769
Query: 259 LKIDARNININS--KLLHNR------ATVLFKMGKYNEAIADC-------TLALEKDPNY 303
L A ++I S +++ R A ++G+ N + + + E
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNF-------------LEEAKRLL 350
++ + +R G E V N+N L+ +L
Sbjct: 1830 VERVGKRT------GWLVEIV--------------NYNVENQQYVAAGDLRALDTVTNVL 1869
Query: 351 KRSEVKDYYKILGVTKNASSDDIKK 375
+++ I+ + K+ S ++++
Sbjct: 1870 NFIKLQK-IDIIELQKSLSLEEVEG 1893
Score = 37.0 bits (85), Expect = 0.016
Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 51/150 (34%)
Query: 8 KEDGNTQYK-------LKQYSKALKCYSEAIS----VCPNVAAYYGNRAACYM---MLGM 53
K G L +Y+ AL ++ +S V V Y G + LG
Sbjct: 1748 KSKGLIPADATFAGHSLGEYA-ALASLADVMSIESLV--EVVFYRGMTMQVAVPRDELGR 1804
Query: 54 YTY---ALDDAKLAVSLDPRFSKGLIRQIK------CNIALGDAPTARSNLKALQELDPD 104
Y A++ ++A S + ++ ++ I N
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV---------N---------Y 1846
Query: 105 N-P----AIAQESKALETMAK--NFEGASK 127
N A + +AL+T+ NF K
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876
Score = 32.7 bits (74), Expect = 0.32
Identities = 33/182 (18%), Positives = 54/182 (29%), Gaps = 77/182 (42%)
Query: 333 MDNSRENHNFLEEAKRLLKRSE--VKDYY--KILGVTKN-----------ASSDDIKKAY 377
MD + + A+ + R++ KD Y IL + N I++ Y
Sbjct: 1633 MD-LYKTS---KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 378 RKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRG----------- 426
D KL+ EK+FKE+ E + T RS ++G
Sbjct: 1689 SAMIFETIVDG--------KLKTEKIFKEINEH---STSYTFRS--EKGLLSATQFTQPA 1735
Query: 427 ---------EDIME------DSGMGGH---------AGANLFEQHMFQTYFDPGC---RA 459
ED+ D+ GH + A++ +
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS-------IESLVEVVFY 1788
Query: 460 RG 461
RG
Sbjct: 1789 RG 1790
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 42.4 bits (101), Expect = 1e-05
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
GN YK Y +A++ Y +A+ + PN A + N Y G Y A++ + A+ LDP
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 71 F 71
Sbjct: 76 N 76
Score = 40.8 bits (97), Expect = 6e-05
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
Query: 246 GKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300
G EA + Y +AL++ +A N +K G Y+EAI ALE D
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWY---------NLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 301 PNYLKA 306
PN +A
Sbjct: 74 PNNAEA 79
Score = 39.3 bits (93), Expect = 2e-04
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
N +K G Y+EAI ALE DPN +A ++ G Y E A + Y+
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE----AIEYYQ 67
Score = 38.1 bits (90), Expect = 5e-04
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG 52
GN YK Y +A++ Y +A+ + PN A N G
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 43.4 bits (103), Expect = 1e-04
Identities = 47/340 (13%), Positives = 93/340 (27%), Gaps = 72/340 (21%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC----PNVAAYYGNRAACYMMLGMYTYALDDAKLAVS 66
G K + + A+ V ++A Y Y L Y AL+ ++
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 67 LDPRFS-KGLIRQIKCNIA-----LGDAPTARSNL-KALQ--ELDPDNPAIAQ------- 110
L + + N+ LG+ A + L D A+
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135
Query: 111 ----ESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLN 166
+ K+ G + + A+ + + L+ +
Sbjct: 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN-----------------LSLVT 178
Query: 167 RLQEAQEIANS------ILATDKQNPDAV--FVRGLCLY--YDDKMDLAVNHFQL--LLK 214
L + + DAV + L + + DK + L
Sbjct: 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238
Query: 215 LAPDHAKAKETYKRAKLLKAKKEEGNEKFVA-------------GKNQEAFDIYTEALKI 261
+ A E YK+ L ++ + A ++A D + + L I
Sbjct: 239 FLGEFETASEYYKKT--LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296
Query: 262 DARNININSKL---LHNRATVLFKMGKYNEAIADCTLALE 298
A+ +N + +G +++A+ LE
Sbjct: 297 -AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335
Score = 37.3 bits (87), Expect = 0.009
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 6/91 (6%)
Query: 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL 297
EG +G + + A+++ ++ S + F + Y +A+ L
Sbjct: 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74
Query: 298 E------KDPNYLKALSRRCKCFHALGQYKE 322
KA LG + E
Sbjct: 75 TLARTIGDQLGEAKASGNLGNTLKVLGNFDE 105
Score = 30.7 bits (70), Expect = 1.0
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 6/59 (10%)
Query: 7 HKEDGNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALD 59
+ A+ Y E +S+ +GN + +LG + A+
Sbjct: 150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208
Score = 29.2 bits (66), Expect = 3.2
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 4/54 (7%)
Query: 273 LHNRATVLFKMGKYNEAIADCTLAL----EKDPNYLKALSRRCKCFHALGQYKE 322
L L K G ++ A+ E S+ + L Y +
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Score = 29.2 bits (66), Expect = 3.5
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALDDAKLA 64
GN L + +A+ + + + N + M+LG+ +
Sbjct: 314 GNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSE 373
Query: 65 VS 66
+
Sbjct: 374 NT 375
Score = 27.6 bits (62), Expect = 9.7
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 19/96 (19%)
Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVA-------------GKNQEAFDIYTEALKIDAR 264
D+ KA + + + L +E + G + +A + L+I +R
Sbjct: 282 DYEKAIDYHLKH--LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI-SR 338
Query: 265 NININSKL---LHNRATVLFKMGKYNEAIADCTLAL 297
+ S N + + +G
Sbjct: 339 EVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSEN 374
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 41.5 bits (98), Expect = 3e-04
Identities = 47/346 (13%), Positives = 89/346 (25%), Gaps = 84/346 (24%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC----PNVAAYYGNRAACYMMLG-------MYTYAL- 58
G K + + A+ V ++A Y Y L + + L
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71
Query: 59 ------DDAKLAVSLDPRFSKGLIRQIKCNIA-----LGDAPTARSNL-KALQELDPDNP 106
D A + N+ LG+ A + L
Sbjct: 72 LARTIGDQLGEAKASG-------------NLGNTLKVLGNFDEAIVCCQRHLD------- 111
Query: 107 AIAQESKALETMAKNFEGASKAFEA-NDYRTAMFYLDRAMDQGVASKTYKLMKA-----E 160
I++E A+ + A D + A E
Sbjct: 112 -ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ--AAVDLYEE 168
Query: 161 CLAHLNRLQEAQEIANS------ILATDKQNPDAV--FVRGLCLY--YDDKMDLAVNHFQ 210
L+ + L + + DAV + L + + DK +
Sbjct: 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228
Query: 211 L--LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA-------------GKNQEAFDIY 255
L + A E YK+ L ++ + A ++A D +
Sbjct: 229 LGNAYIFLGEFETASEYYKKT--LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 286
Query: 256 TEALKIDARNININS---KLLHNRATVLFKMGKYNEAIADCTLALE 298
+ L I A+ + + + +G +++A+ LE
Sbjct: 287 LKHLAI-AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331
Score = 37.6 bits (88), Expect = 0.007
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 6/91 (6%)
Query: 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL 297
EG +G + + A+++ ++ S + F + Y +A+ L
Sbjct: 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70
Query: 298 E------KDPNYLKALSRRCKCFHALGQYKE 322
KA LG + E
Sbjct: 71 TLARTIGDQLGEAKASGNLGNTLKVLGNFDE 101
Score = 33.0 bits (76), Expect = 0.19
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALDDAKLA 64
GNT L+ Y KA+ + + +++ + Y LG + A+ A+
Sbjct: 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329
Query: 65 VSL 67
+ +
Sbjct: 330 LEI 332
Score = 30.7 bits (70), Expect = 1.1
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 6/63 (9%)
Query: 3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTY 56
+ A+ Y E +S+ +GN + +LG +
Sbjct: 142 CPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 201
Query: 57 ALD 59
A+
Sbjct: 202 AVI 204
Score = 29.5 bits (67), Expect = 2.6
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 4/54 (7%)
Query: 273 LHNRATVLFKMGKYNEAIADCTLAL----EKDPNYLKALSRRCKCFHALGQYKE 322
L L K G ++ A+ E S+ + L Y +
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 61
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 41.2 bits (96), Expect = 4e-04
Identities = 19/147 (12%), Positives = 37/147 (25%), Gaps = 20/147 (13%)
Query: 83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLD 142
A G+ A L+A ++ + A A + + +
Sbjct: 113 AAQGNYADAMEALEAAPVAGSEHLV-------------AWMKAVVYGAAERWTDVIDQVK 159
Query: 143 RAM---DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP---DAVFVRGLCL 196
A D+ +A + A+L EA+ + + +
Sbjct: 160 SAGKWPDKFLAGAA-GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMAR 218
Query: 197 YYDDKMDLAVNHFQLLLKLAPDHAKAK 223
AV + L P+ A
Sbjct: 219 RSQGNESAAVALLEWLQTTHPEPKVAA 245
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 41.0 bits (96), Expect = 5e-04
Identities = 33/259 (12%), Positives = 71/259 (27%), Gaps = 27/259 (10%)
Query: 18 KQYSKALKCYSEAISVC-----------PNVAAYYGNRAACYMMLGMYTYALDDAKLAVS 66
++ S+A + ++A + A+ Y A + A D
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 67 LDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS 126
++ L K G + + + E+ +T A + A
Sbjct: 65 AHAN-NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123
Query: 127 KAFEANDYRTAMFYLDRAMDQG-------VASKTYKLMKAECLAHLNRLQEAQEIANSIL 179
K E D A+ +A A++ + L + EA
Sbjct: 124 KLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKA-SRLLVRQQKFDEAAASLQKEK 182
Query: 180 ATDKQNPD------AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLK 233
+ K+ + + L + A + + P + +++ LL+
Sbjct: 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQ 241
Query: 234 AKKEEGNEKFVAGKNQEAF 252
A E+ E+ +
Sbjct: 242 AYDEQDEEQLLRVCRSPLV 260
Score = 36.0 bits (83), Expect = 0.021
Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 14/132 (10%)
Query: 4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYA 57
A + + SKA+ Y +A +V A G + + + A
Sbjct: 115 AAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEA 174
Query: 58 LDDAKLAVSLD------PRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE 111
+ S+ P K I Q+ + D A+ ++ + + +++
Sbjct: 175 AASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI--PGFSGSED 232
Query: 112 SKALETMAKNFE 123
ALE + + ++
Sbjct: 233 CAALEDLLQAYD 244
Score = 35.3 bits (81), Expect = 0.037
Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 18/159 (11%)
Query: 193 GLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAF 252
G+ L +M AV + + + ++ A L + +A
Sbjct: 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA---AMALD----RAGKLMEPLDLSKAV 135
Query: 253 DIYTEALKIDARNININS--KLLHNRATVLFKMGKYNEAIADCTLALE------KDPNYL 304
+Y +A + + +L+ + +L + K++EA A P
Sbjct: 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195
Query: 305 KALSRRCKCFHALGQY---KECVIDAEKIYKMDNSRENH 340
K + Y ++CV ++ I S +
Sbjct: 196 KKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCA 234
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 40.7 bits (96), Expect = 7e-04
Identities = 39/319 (12%), Positives = 78/319 (24%), Gaps = 71/319 (22%)
Query: 10 DGNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+ + L + ++ G + +
Sbjct: 14 ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73
Query: 64 AVSLDPRFSKGLIRQIKCNIA-----LGDAPTARSNL-KALQELDPDNPAIAQESKALET 117
A+ + I + LGD A L +A+
Sbjct: 74 AIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--------LAKSMNDRLG 124
Query: 118 MAKNFEGASKAFEA-NDYRTAMFYLDRAMDQGVASKTY-KLMKAECLAHLNRLQEAQEIA 175
AK+ + + A +R + +A + +L + L +L
Sbjct: 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLT--LARQLGDRLSEGRALYNL---------- 172
Query: 176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK 235
G + K N + + +A E Y+ LK
Sbjct: 173 -----------------GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN--LKLM 213
Query: 236 KEEGNEKFVA-------------GKNQEAFDIYTEALKIDARNININS---KLLHNRATV 279
++ G+ G Q A + + E L+I AR + + N
Sbjct: 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI-AREFGDRAAERRANSNLGNS 272
Query: 280 LFKMGKYNEAIADCTLALE 298
+G++ +A L
Sbjct: 273 HIFLGQFEDAAEHYKRTLA 291
Score = 38.8 bits (91), Expect = 0.003
Identities = 12/124 (9%), Positives = 30/124 (24%), Gaps = 21/124 (16%)
Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVA-------------GKNQEAFDIYTEALKIDAR 264
++ + + G + + A++
Sbjct: 23 SGGGGTNSHDGN--SQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE 80
Query: 265 NININSKLLHNRATVLFKMGKYNEAIADCTLALE------KDPNYLKALSRRCKCFHALG 318
++ S + F +G YN+A+ L K+ +G
Sbjct: 81 DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140
Query: 319 QYKE 322
++ E
Sbjct: 141 RFDE 144
Score = 38.1 bits (89), Expect = 0.005
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 29/156 (18%)
Query: 218 DHAKAKETYKRAKLLKAKKEE-----------GNEKFVAGKNQEAFDIYTEALKIDARNI 266
D ++ A ++A E+ GN F G +A + L + A+++
Sbjct: 63 DCRAGVAFFQAA--IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL-AKSM 119
Query: 267 NINS---KLLHNRATVLFKMGKYNEAIADCTLALE-----KD-PNYLKALSRRCKCFHAL 317
N K N L MG+++EA C L D + +AL +HA
Sbjct: 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179
Query: 318 GQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRS 353
G++ + + L A + +
Sbjct: 180 GKHLGQRNPGKF------GDDVKEALTRAVEFYQEN 209
Score = 37.7 bits (88), Expect = 0.008
Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 28/153 (18%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALD----D 60
GNT Y L + A++ + E + + N ++ LG + A +
Sbjct: 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289
Query: 61 AKLAVSLDPRFSKGLIRQIKCNIA-----LGDAPTARSNL-KALQELDPDNPAIAQESKA 114
LAV L R + Q ++ L + TA + L IAQE
Sbjct: 290 LALAVELGEREVEA---QSCYSLGNTYTLLHEFNTAIEYHNRHLA--------IAQELGD 338
Query: 115 LETMAKNFEGASKAFEA-NDYRTAMFYLDRAMD 146
A+ A A + A+ Y ++ +
Sbjct: 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371
Score = 35.7 bits (83), Expect = 0.028
Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 19/97 (19%)
Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVA-------------GKNQEAFDIYTEALKIDAR 264
A E YKR L E G + A + A + + L I A+
Sbjct: 278 QFEDAAEHYKRT--LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI-AQ 334
Query: 265 NININSKL---LHNRATVLFKMGKYNEAIADCTLALE 298
+ + +G + A+ L+
Sbjct: 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 39.2 bits (91), Expect = 0.001
Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 12/141 (8%)
Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
+ S+ + ++ A+ + D+ + KL KA+CL + + AQE+ +I
Sbjct: 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69
Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE 241
+ N + L L+ + + L PD+ +
Sbjct: 70 YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQ------------ 117
Query: 242 KFVAGKNQEAFDIYTEALKID 262
G+++EA ++ LK++
Sbjct: 118 YNQVGRDEEALELLWNILKVN 138
Score = 38.0 bits (88), Expect = 0.002
Identities = 17/149 (11%), Positives = 40/149 (26%), Gaps = 12/149 (8%)
Query: 75 LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDY 134
L++Q+ + G+ A + ++ L + A E +
Sbjct: 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRG------DVKLAKADCL------LETKQF 56
Query: 135 RTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL 194
A L + + L+ L + LA + N + +
Sbjct: 57 ELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAV 116
Query: 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAK 223
+ + A+ +LK+ +
Sbjct: 117 QYNQVGRDEEALELLWNILKVNLGAQDGE 145
Score = 34.2 bits (78), Expect = 0.043
Identities = 19/145 (13%), Positives = 41/145 (28%), Gaps = 12/145 (8%)
Query: 43 NRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELD 102
+ + + G + AL+ + + + C + A+ L +
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70
Query: 103 PDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL 162
D + LE + E L++ + + A
Sbjct: 71 QD-NSYKSLIAKLELHQQAAESPELK-----------RLEQELAANPDNFELACELAVQY 118
Query: 163 AHLNRLQEAQEIANSILATDKQNPD 187
+ R +EA E+ +IL + D
Sbjct: 119 NQVGRDEEALELLWNILKVNLGAQD 143
Score = 33.8 bits (77), Expect = 0.054
Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 7/123 (5%)
Query: 273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
L + + L + G++ +A+ ++ + + C Q++ A+++
Sbjct: 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFEL----AQELLA 64
Query: 333 MDNSRENHNFLEEAKR---LLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRH 389
N + L +++ K L A+ D+ + A + R
Sbjct: 65 TIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRD 124
Query: 390 TNA 392
A
Sbjct: 125 EEA 127
Score = 29.2 bits (65), Expect = 2.0
Identities = 20/178 (11%), Positives = 51/178 (28%), Gaps = 52/178 (29%)
Query: 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA------- 289
++ +E G++ +A ++ + +A L + ++ A
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQS----RGDVKLAKADCLLETKQFELAQELLATI 66
Query: 290 ---------------------------IADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
+ L +P+ + ++ +G+ +E
Sbjct: 67 PLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEE 126
Query: 323 CVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKR 380
+ I K++ ++ E K+ D LG + I YR++
Sbjct: 127 ALELLWNILKVNLGAQD----GEVKKTF-----MDILSALG-----QGNAIASKYRRQ 170
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 39.8 bits (93), Expect = 0.001
Identities = 28/266 (10%), Positives = 83/266 (31%), Gaps = 48/266 (18%)
Query: 121 NFEGASKAFEANDYRTAMFYLDRAM--------DQGVASKTYKLMKAECLAHLNRLQEAQ 172
NF + +Y +A+ + +A A +K+ +E ++ + +
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKM--SESYYYMKQTYFSM 163
Query: 173 EIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL 232
+ A K++ C A N L + A +++A
Sbjct: 164 DYARQAYEIYKEHEAYNIRLLQCH-----SLFATNFLDLK-----QYEDAISHFQKA--Y 211
Query: 233 KAKKEEGNEKFVA-------------GKNQEAFDIYTEALKI--DARNININSKLLHNRA 277
+ E + + + ++A + A+ + ++ + +
Sbjct: 212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271
Query: 278 TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSR 337
+ +K+GK ++A + K ++ K + + + + + D
Sbjct: 272 QIHYKLGKIDKAH----------EYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA 321
Query: 338 ENHNFLEEAKRLLKRSEVKDYYKILG 363
F + + + ++++D+ +
Sbjct: 322 IQG-FFDFLESKMLYADLEDFAIDVA 346
Score = 39.0 bits (91), Expect = 0.002
Identities = 45/288 (15%), Positives = 97/288 (33%), Gaps = 48/288 (16%)
Query: 2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV------AAYYGNRAACYMMLGMYT 55
L + G + ++Y A+K + +A S V A ++ + Y +
Sbjct: 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTY 160
Query: 56 YALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115
+++D A+ A + IR ++C+ T +LK ++ AI+ KA
Sbjct: 161 FSMDYARQAYEIYKEHEAYNIRLLQCHSLFA---TNFLDLKQYED------AISHFQKAY 211
Query: 116 ETMAKNFEGASKA----------FEANDYRTAMFYLDRAM-------DQGVASKTYKLMK 158
+ + Y A+ Y RA+ + Y L+
Sbjct: 212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI- 270
Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC----LYYDDKMDLAVNHFQLLLK 214
+ L ++ +A E + +A ++ D +++ LY + A+ F L+
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330
Query: 215 LAPDHAKAKETYKR-AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI 261
+A ++ AK + Q+A + + ++
Sbjct: 331 SKMLYADLEDFAIDVAKYYHER----------KNFQKASAYFLKVEQV 368
Score = 34.4 bits (79), Expect = 0.068
Identities = 31/244 (12%), Positives = 71/244 (29%), Gaps = 39/244 (15%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC-------PNVAAYYGNRAACYMMLGMYTYALDDAKL 63
+ Y +KQ ++ +A + + + A ++ L Y A+ +
Sbjct: 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQK 209
Query: 64 AVSLDPRFS-KGLIRQIKCNIA-----LGDAPTARSNL-KALQELDPDNPAIAQESKALE 116
A S+ L+ + NI A +A+ + +ES L
Sbjct: 210 AYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA--------VFEESNILP 261
Query: 117 TMAKNFEGASKAFEA-NDYRTAMFYLDRAMD--QGVASKTYKLMKAECLAHLNRLQEAQE 173
++ + + ++ A Y + M Q Y + E L L +E
Sbjct: 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS-EFEFLKSLYLSGPDEE 320
Query: 174 IANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLK 233
+ + + D+A + + + KA + + +
Sbjct: 321 AIQGFFDFLESKMLYADLEDFAI------DVAKYYHERK-----NFQKASAYFLKV--EQ 367
Query: 234 AKKE 237
++
Sbjct: 368 VRQL 371
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum,
metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB:
1tjc_A
Length = 104
Score = 36.9 bits (85), Expect = 0.002
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 27/120 (22%)
Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
FE A+ DY ++++A+ Q + + K L +L
Sbjct: 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYL---------------- 52
Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE 241
+Y +D A+ + LL+L P+H +A K + + AK+++ N+
Sbjct: 53 -----------SYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKEKDVNK 101
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 39.0 bits (90), Expect = 0.002
Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 16/188 (8%)
Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE 241
+Q + + + + + LL + Y+ + A N
Sbjct: 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ---LTGIDVYQNLYIENAI---ANI 164
Query: 242 KFVAGKNQEAFDIYTEALKI---DARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
G ++ D++ + LK N + K+ +N A L+ +Y E++ A+E
Sbjct: 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224
Query: 299 ------KDPNYLKALSRRCKCFHALGQYKECVIDA-EKIYKMDNSRENHNFLEEAKRLLK 351
+ +R +C L + + DA +K + E H + E +
Sbjct: 225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKIS 284
Query: 352 RSEVKDYY 359
R E ++
Sbjct: 285 RLEHHHHH 292
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 39.0 bits (91), Expect = 0.002
Identities = 33/315 (10%), Positives = 73/315 (23%), Gaps = 51/315 (16%)
Query: 118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQ--GVASKTYKLMKAECLAHLNRLQEAQEIA 175
M E + ++ + G+ + EA
Sbjct: 65 MLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYY 124
Query: 176 NSILATDKQNPDAVFVR------GLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA 229
D + Y+ + +++ H L + +H ++
Sbjct: 125 REAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184
Query: 230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ---SKLLHNRATVLFKMGKY 286
+ +A AL++ A +I + + L N A + G
Sbjct: 185 LFVI-----AGNYDDFKHYDKALPHLEAALEL-AMDIQNDRFIAISLLNIANSYDRSGDD 238
Query: 287 NEAIADCTLALE-----KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHN 341
A+ A + K L GQ ++
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAF----------------Q 282
Query: 342 FLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQE 401
F+EE + K Y ++ + + + + L E++
Sbjct: 283 FIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL-------------SYFEKK 329
Query: 402 KLFKEVGEAYGILSD 416
L + +
Sbjct: 330 NLHAYIEACARSAAA 344
Score = 37.9 bits (88), Expect = 0.005
Identities = 41/310 (13%), Positives = 77/310 (24%), Gaps = 67/310 (21%)
Query: 7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNV------AAYYGNRAACYMMLGMYTYALDD 60
G ++ K+Y +A+ Y EA P V A ++ A Y + ++
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163
Query: 61 AKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
A+ + IR I+ + + K + A+ ALE
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIA---GNYDDFKHYDK------ALPHLEAALELAMD 214
Query: 121 NFEGASKA----------FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQE 170
A + D + A+ + Q+
Sbjct: 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEH---------------------------FQK 247
Query: 171 AQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK 230
A +++ + P +F L + A + L K +
Sbjct: 248 AAKVSREKV--PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR-SHKFYKELFL 304
Query: 231 LLKAKKEEGNEKFVAGKNQEAFDIYTEALKI--DARNININSKLLHNRATVLFKMGKYNE 288
L+A K + L + A V + +
Sbjct: 305 FLQAV----------YKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQ 354
Query: 289 AIADCTLALE 298
A A L+
Sbjct: 355 AAAFYRKVLK 364
Score = 34.8 bits (80), Expect = 0.060
Identities = 28/210 (13%), Positives = 52/210 (24%), Gaps = 29/210 (13%)
Query: 132 NDYRTAMFYLDRAMDQGVASKTYKLMKAECL-------AHLNRLQEAQEIANSILATDKQ 184
+M+++ +A+D Y + + L +A + L
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214
Query: 185 NPDAVFVR------GLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238
+ F+ +AV HFQ K++ + L K
Sbjct: 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK-------VPDLLPKVLFGL 267
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
AG+ Q+AF E L + K L + K L
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDH---ITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324
Query: 299 ------KDPNYLKALSRRCKCFHALGQYKE 322
F + +++
Sbjct: 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQ 354
Score = 30.2 bits (68), Expect = 1.7
Identities = 21/165 (12%), Positives = 51/165 (30%), Gaps = 12/165 (7%)
Query: 157 MKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA 216
+KAE + +++E Q++ R + + + + +L
Sbjct: 34 LKAEVEQDIQQMEEDQDLLIYYSLMCF--------RHQLMLDYLEPGKTYGNRPTVTELL 85
Query: 217 PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN---INSKLL 273
++ + G +F + EA Y EA K ++ ++
Sbjct: 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKE-LPFVSDDIEKAEFH 144
Query: 274 HNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318
A + M + + ++ AL+ N+ R + +
Sbjct: 145 FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 38.1 bits (88), Expect = 0.004
Identities = 34/263 (12%), Positives = 75/263 (28%), Gaps = 60/263 (22%)
Query: 1 ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMY 54
E +A+ + K+ + A + +A Y C+ G
Sbjct: 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93
Query: 55 TYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA 114
A +L+ ++ + +
Sbjct: 94 V----------------------------------NAVDSLENAIQIFTHRGQFRRGANF 119
Query: 115 LETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ-------GVASKTYKLMKAECLAHLNR 167
+ + E + +DY A+ + A + +++K + A+ A +
Sbjct: 120 KFELGEILE-----NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC-ADLKALDGQ 173
Query: 168 LQEAQEIANSILATDKQNPDAV-------FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220
EA +I + ++ + N + +GLC A Q P+ A
Sbjct: 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233
Query: 221 KAKETYKRAKLLKAKKEEGNEKF 243
++E+ L+ A E +E+
Sbjct: 234 DSRESNFLKSLIDAVNEGDSEQL 256
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 37.1 bits (86), Expect = 0.009
Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 12/145 (8%)
Query: 119 AKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSI 178
+ A + + ++Y A+ L A + L+ AE L LNR ++A+ + +I
Sbjct: 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177
Query: 179 LATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238
D+ V + L + Q + P+ A + A L
Sbjct: 178 PLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALA--TQLALQL------ 229
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDA 263
G+N+EA ++ L+ D
Sbjct: 230 ----HQVGRNEEALELLFGHLRXDL 250
Score = 32.1 bits (73), Expect = 0.35
Identities = 31/211 (14%), Positives = 59/211 (27%), Gaps = 29/211 (13%)
Query: 35 PNVAAYYGNRA--ACYMMLG-----MYTYALDDAKLAVSLD---PRFSKGLIRQIKCNIA 84
+AA +G RA Y+ + + + LD PR + +Q +
Sbjct: 70 QMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPREEELXAQQAMQLMQ 129
Query: 85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRA 144
+ A L +L N I E A
Sbjct: 130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVL-------------XT 176
Query: 145 MDQGVASKTYKLMKAECLAHLNRLQEAQEIAN--SILATDKQNPDAVFVRGLCLYYDDKM 202
+ Y+ + A+ + L + + EI +A + ++ L L+ +
Sbjct: 177 IPLQDQDTRYQGLVAQ-IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN 235
Query: 203 DLAVNHFQLLLKLAPDHAKAKETYKRAKLLK 233
+ A +LL A + R +
Sbjct: 236 EEA---LELLFGHLRXDLTAADGQTRXTFQE 263
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 37.1 bits (87), Expect = 0.009
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 246 GKNQEAFDIYTEALKIDARNININ----SKLLHNRATVLFKMGKYNEAIADCTLAL---- 297
K ++A ++ +AL I + + + + L+N A + K GKY EA C AL
Sbjct: 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142
Query: 298 ----EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
+ P+ K L+ G+Y+E E Y+
Sbjct: 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEE----VEYYYQ 177
Score = 36.4 bits (85), Expect = 0.017
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 246 GKNQEAFDIYTEALKIDARNININ----SKLLHNRATVLFKMGKYNEAIADCTLAL---- 297
GK +EA + AL+I + + + +K L+N A + GKY E AL
Sbjct: 125 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184
Query: 298 ----EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
DPN K + C+ G++K+ AE +YK
Sbjct: 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQ----AETLYK 219
Score = 36.0 bits (84), Expect = 0.020
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 16/99 (16%)
Query: 246 GKNQEAFDIYTEALKIDARNININ----SKLLHNRATVLFKMGKYNEAIADCTLAL---- 297
G+ + A + +AL+ + + + +L+ A V KY +A AL
Sbjct: 41 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100
Query: 298 ----EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
+ P L+ + G+YKE AE + K
Sbjct: 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKE----AEPLCK 135
Score = 34.8 bits (81), Expect = 0.042
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 273 LHNRATVLFKMGKYNEAIADCTLALE--------KDPNYLKALSRRCKCFHALGQYKECV 324
LHN G+Y A+ C ALE P+ L+ + +YK+
Sbjct: 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD-- 87
Query: 325 IDAEKIYK 332
A +
Sbjct: 88 --AANLLN 93
Score = 34.1 bits (79), Expect = 0.081
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 17/102 (16%)
Query: 246 GKNQEAFDIYTEALKIDARNININ----SKLLHNRATVLFKMGKYNEAIADCTLAL---- 297
GK +E Y AL+I + + +K +N A+ K GK+ +A L
Sbjct: 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226
Query: 298 -----EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
D + G+ K+ +
Sbjct: 227 EREFGSVDDENKPIWMHAEEREECKGKQKD----GTSFGEYG 264
Score = 32.1 bits (74), Expect = 0.35
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC--------PNVAAYYGNRAACYMMLGMYTYAL 58
+Y + Y A+ + PNVA N A+CY+ G + A
Sbjct: 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215
Score = 30.6 bits (70), Expect = 0.98
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 8/56 (14%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC--------PNVAAYYGNRAACYMMLGMYTYAL 58
+Y A+ +A+ P+VA A Y Y A
Sbjct: 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89
Score = 30.2 bits (69), Expect = 1.3
Identities = 5/57 (8%), Positives = 13/57 (22%), Gaps = 9/57 (15%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC---------PNVAAYYGNRAACYMMLGMYTYAL 58
+ K ++ +A Y E ++ + + G
Sbjct: 202 ASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258
Score = 29.4 bits (67), Expect = 2.3
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 8/56 (14%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC--------PNVAAYYGNRAACYMMLGMYTYAL 58
K +Y +A A+ + P+VA N A G Y
Sbjct: 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173
Score = 28.3 bits (64), Expect = 5.0
Identities = 7/54 (12%), Positives = 10/54 (18%), Gaps = 6/54 (11%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYAL 58
+ + P V N A Y G + A
Sbjct: 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE 298
Score = 28.3 bits (64), Expect = 5.8
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC--------PNVAAYYGNRAACYMMLGMYTYAL 58
+Y A ++A+++ P VAA N A Y G Y A
Sbjct: 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 131
Score = 28.3 bits (64), Expect = 6.1
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 20/92 (21%)
Query: 218 DHAKAKETYKRAKLLKAKKEEGNE--------------KFVAGKNQEAFDIYTEALKIDA 263
+A+ YK ++E G+ + GK ++ A
Sbjct: 210 KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269
Query: 264 RNIN----INSKLLHNRATVLFKMGKYNEAIA 291
++ + L N + + GK+ A
Sbjct: 270 CKVDSPTVTTT--LKNLGALYRRQGKFEAAET 299
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 36.1 bits (84), Expect = 0.011
Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 18/97 (18%)
Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVA-------------GKNQEAFDIYTEALKIDAR 264
+A+ +++ + ++ G+ G A + E ++ A
Sbjct: 41 RFDEARASFQAL--QQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS 98
Query: 265 ---NININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
+ S + ATV G A + +L
Sbjct: 99 LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135
Score = 34.6 bits (80), Expect = 0.041
Identities = 5/55 (9%), Positives = 11/55 (20%), Gaps = 6/55 (10%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALD 59
G + ++ +A + M G + A
Sbjct: 33 GYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARR 87
Score = 32.6 bits (75), Expect = 0.16
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 7/56 (12%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC-------PNVAAYYGNRAACYMMLGMYTYALD 59
G + + A +C+ E + +A A + G A
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ 128
Score = 32.6 bits (75), Expect = 0.17
Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 23/96 (23%)
Query: 221 KAKETYKRAKLLKAKKEEGNEKFVA-------------GKNQEAFDIYTEALKI-----D 262
+A + +A+ + + + EA + + D
Sbjct: 4 EAHDYALAE--RQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD 61
Query: 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
+ LH V G ++ A E
Sbjct: 62 HTAE---HRALHQVGMVERMAGNWDAARRCFLEERE 94
Score = 30.7 bits (70), Expect = 0.76
Identities = 11/100 (11%), Positives = 22/100 (22%), Gaps = 24/100 (24%)
Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVA--------------GKNQEAFDIYTEALKI-- 261
+ A+ + + + A G A Y ++L
Sbjct: 81 NWDAARRCFLEE--RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138
Query: 262 ---DARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
D I + + + EA A +
Sbjct: 139 QADDQVAI---ACAFRGLGDLAQQEKNLLEAQQHWLRARD 175
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 36.0 bits (84), Expect = 0.017
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 246 GKNQEAFDIYTEALKIDARNININ----SKLLHNRATVLFKMGKYNEAIADCTLAL---- 297
K +EA + +AL I + + + + L+N A + K GKY EA C AL
Sbjct: 57 NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116
Query: 298 ----EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
+ P+ K L+ G+ +E E Y+
Sbjct: 117 KVLGKFHPDVAKQLNNLALLCQNQGKAEE----VEYYYR 151
Score = 35.6 bits (83), Expect = 0.025
Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 27/104 (25%)
Query: 246 GKNQEAFDIYTEALKIDARNININSKLL-----------HNRATVLFKMGKYNEAIADCT 294
GK Q+A +Y E L + K + K ++
Sbjct: 183 GKYQDAETLYKEILTR------AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236
Query: 295 LALEKD------PNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
P L + G+ + A +
Sbjct: 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA----AHTLED 276
Score = 34.8 bits (81), Expect = 0.050
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 246 GKNQEAFDIYTEALKIDARNININ----SKLLHNRATVLFKMGKYNEAIADCTLAL---- 297
A + +AL+ + + + +L+ A V KY EA AL
Sbjct: 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE 74
Query: 298 ----EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
+ P L+ + G+YKE AE + K
Sbjct: 75 KTLGKDHPAVAATLNNLAVLYGKRGKYKE----AEPLCK 109
Score = 32.5 bits (75), Expect = 0.25
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 17/100 (17%)
Query: 246 GKNQEAFDIYTEALKIDARNININ----SKLLHNRATVLFKMGKYNEAIADCTLAL---- 297
GK +E Y AL+I A + + +K +N A+ K GKY +A L
Sbjct: 141 GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200
Query: 298 -----EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
+ + + + + ++ + +
Sbjct: 201 EKEFGSVNGDNKPIWMHAEEREESKDKRRD----SAPYGE 236
Score = 31.3 bits (72), Expect = 0.55
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC--------PNVAAYYGNRAACYMMLGMYTYAL 58
+ + Y A+ + PNVA N A+CY+ G Y A
Sbjct: 134 ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE 189
Score = 30.2 bits (69), Expect = 1.4
Identities = 5/57 (8%), Positives = 13/57 (22%), Gaps = 9/57 (15%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC---------PNVAAYYGNRAACYMMLGMYTYAL 58
+ K +Y A Y E ++ + + + +
Sbjct: 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA 232
Score = 29.0 bits (66), Expect = 3.3
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC--------PNVAAYYGNRAACYMMLGMYTYAL 58
+Y +A ++A+++ P VAA N A Y G Y A
Sbjct: 50 ALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105
Score = 28.3 bits (64), Expect = 5.1
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 8/56 (14%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC--------PNVAAYYGNRAACYMMLGMYTYAL 58
K +Y +A A+ + P+VA N A G
Sbjct: 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147
Score = 28.3 bits (64), Expect = 5.2
Identities = 6/55 (10%), Positives = 10/55 (18%), Gaps = 6/55 (10%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALD 59
+ + + P V + A Y G A
Sbjct: 219 EEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHT 273
Score = 28.3 bits (64), Expect = 5.4
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 12/68 (17%)
Query: 273 LHNRATVLFKMGKYNEAIADCTLALE--------KDPNYLKALSRRCKCFHALGQYKECV 324
H+ + A+ C ALE P+ L+ + +YKE
Sbjct: 4 SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKE-- 61
Query: 325 IDAEKIYK 332
A +
Sbjct: 62 --AAHLLN 67
Score = 27.9 bits (63), Expect = 6.4
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 8/58 (13%)
Query: 10 DGNTQYKLKQYSKALKCYSEAISVC--------PNVAAYYGNRAACYMMLGMYTYALD 59
+ L A+ +A+ P+VA A Y Y A
Sbjct: 7 HHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAH 64
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 34.8 bits (81), Expect = 0.021
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 11 GNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALD 59
GNT Y L + A+ + + + + Y N Y+ LG + A +
Sbjct: 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASE 70
Score = 33.7 bits (78), Expect = 0.051
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 23/99 (23%)
Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVA-------------GKNQEAFDIYTEALKI--- 261
+ A +++ L KE G++ G+ + A + Y + L +
Sbjct: 24 NFRDAVIAHEQR--LLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81
Query: 262 --DARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
D ++ ++ + Y +AI L
Sbjct: 82 LKDRAVE---AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117
Score = 32.9 bits (76), Expect = 0.100
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 19/89 (21%)
Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVA-------------GKNQEAFDIYTEALKIDAR 264
+ A E YK+ L ++ + A ++A D + + L I A+
Sbjct: 64 EFETASEYYKKT--LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQ 120
Query: 265 NININS---KLLHNRATVLFKMGKYNEAI 290
+ + + +G +++A+
Sbjct: 121 ELKDRIGEGRACWSLGNAYTALGNHDQAM 149
Score = 28.7 bits (65), Expect = 2.9
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 246 GKNQEAFDIYTEALKIDARNININSKL---LHNRATVLFKMGKYNEAIADCTLALE 298
G ++A + + L I A+ + N +G++ A L
Sbjct: 23 GNFRDAVIAHEQRLLI-AKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A
{Rhodothermus marinus}
Length = 261
Score = 32.8 bits (75), Expect = 0.20
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 17/133 (12%)
Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQ---GVASKTYKLMKAECLAHLNRLQEAQEIANSI 178
FE A + + Y A+ Y + + A A
Sbjct: 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERF 78
Query: 179 LATDKQNPD---AVFVRGLCLYYDD---KMDL-----AVNHFQLLLKLAPDHAKAKETYK 227
+ + +P A + R +C Y ++D A+ FQL + P+H + +
Sbjct: 79 IQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ 138
Query: 228 RAKLLK---AKKE 237
+ + L+ A+K+
Sbjct: 139 KIRELRAKLARKQ 151
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 32.6 bits (74), Expect = 0.28
Identities = 38/307 (12%), Positives = 78/307 (25%), Gaps = 41/307 (13%)
Query: 19 QYSKALKCYSEAISVCPNVAAY-----YGNRAACYMMLGMYTYALDDAKLAVSLDPRFSK 73
+A + A+ P Y G T +L + + +
Sbjct: 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88
Query: 74 ------GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASK 127
LI+Q + A G TA + +L + ++ E + + A
Sbjct: 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL--EQLPMHEFLVRIR--AQL 144
Query: 128 AFEANDYRTAMFYLDRAMDQG-VASKTYKLMKAECLAHL----NRLQEAQEIANSILATD 182
+ A ++ +L L L A+ N +
Sbjct: 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204
Query: 183 KQNPDAV-------FVRGLCLYYDDKMDLAVNHFQLLLKLAPD--HAKAKETYKRAKLLK 233
VR + A N + K H + A+
Sbjct: 205 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264
Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININS--KLLHNRATVLFKMGKYNEAIA 291
G+ + A + E + ++ + L + ++ G+ ++A
Sbjct: 265 L----------LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 314
Query: 292 DCTLALE 298
AL+
Sbjct: 315 VLLDALK 321
Score = 32.3 bits (73), Expect = 0.31
Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 17/143 (11%)
Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
+R D D A +L L+ P + L G G+
Sbjct: 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVL-------GEVLHCKGELTR 71
Query: 251 AFDIYTEALKI--DARNININSKLLHNRATVLFKMGKYNEAIADCTLALE--------KD 300
+ + + ++ + L ++ +LF G A A + +
Sbjct: 72 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131
Query: 301 PNYLKALSRRCKCFHALGQYKEC 323
P + + R + A + E
Sbjct: 132 PMHEFLVRIRAQLLWAWARLDEA 154
Score = 29.2 bits (65), Expect = 3.3
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 272 LLHNRATVLFKMGKYNEAIADCTLALEKDPNY-----LKALSRRCKCFHALGQYKECVID 326
RA V G +EA LALE+ P + A S + H G+
Sbjct: 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTR---- 71
Query: 327 AEKIYK--MDNSRENHNFLEEAKRLLKRSEV 355
+ + + +R++ + L+++SE+
Sbjct: 72 SLALMQQTEQMARQHDVWHYALWSLIQQSEI 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 32.5 bits (74), Expect = 0.29
Identities = 31/186 (16%), Positives = 54/186 (29%), Gaps = 14/186 (7%)
Query: 57 ALDDAKLAVSLDPRFSKGLI-RQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115
A A A +D S L +++ + LGD A L L E +
Sbjct: 417 ARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVA 476
Query: 116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIA 175
E + +++ A+K F + +A KL A + +
Sbjct: 477 ELLTGDYDSATKHFTE---------VLDTFPGELAP---KLALAATAELAGNT-DEHKFY 523
Query: 176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK 235
++ +T+ A F + AV + + A+ T L
Sbjct: 524 QTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583
Query: 236 KEEGNE 241
E E
Sbjct: 584 TSEVTE 589
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.56
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 10/35 (28%)
Query: 205 AVNHFQLLLKL-APDHAKAKETYKRAKL-LKAKKE 237
A+ Q LKL A D A A L +KA E
Sbjct: 21 ALKKLQASLKLYADDSAPA--------LAIKATME 47
Score = 27.2 bits (59), Expect = 6.8
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 10/34 (29%)
Query: 5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA 38
EK LK+ +LK Y A P +A
Sbjct: 18 EKQA--------LKKLQASLKLY--ADDSAPALA 41
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant,
membrane binding, calcium binding, hydrolase; 2.5A
{Clostridium absonum} SCOP: a.124.1.1 b.12.1.3
Length = 370
Score = 30.3 bits (67), Expect = 1.3
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 96 KALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM 145
+ + + A A K A ++ +Y A +YL + M
Sbjct: 76 HNFTQDNKWYLSYAVPDNAESQTRKFATLAKNEWDKGNYEKAAWYLGQGM 125
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Length = 478
Score = 30.6 bits (69), Expect = 1.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 156 LMKAECLAHLNRLQEAQEIANSI 178
L++AE L LNR EA N I
Sbjct: 368 LLRAEALCALNRSTEAVSYLNMI 390
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein;
alpha-alpha superhelix, structural genomics; HET: MSE;
1.88A {Bacteroides thetaiotaomicron}
Length = 460
Score = 30.2 bits (68), Expect = 1.6
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 17/71 (23%)
Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYK----------------LMKAECLAHLNR-LQ 169
F D R +F R G + L++AE L
Sbjct: 280 DTFVKGDIRLPLFQWMREGYLGYKKFHMRSDDTADLVLMRSAEMYLIEAEAKVRDGVALD 339
Query: 170 EAQEIANSILA 180
+A N++
Sbjct: 340 QAVAPLNTLRT 350
>3kez_A Putative sugar binding protein; structural genomics, joint C
structural genomics, JCSG, protein structure initiative;
1.90A {Bacteroides vulgatus atcc 8482}
Length = 461
Score = 30.1 bits (68), Expect = 1.9
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 156 LMKAECLAHLNRLQEAQEIANSI 178
L AE +A + NSI
Sbjct: 342 LNAAEAAVQTGDNAKAVKYLNSI 364
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 29.5 bits (66), Expect = 2.0
Identities = 20/135 (14%), Positives = 37/135 (27%), Gaps = 15/135 (11%)
Query: 57 ALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116
AL+ A+ P+ + I+ GD A L +L P+ A + + L
Sbjct: 16 ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL- 74
Query: 117 TMAKNFEGASKAFEANDYRTAMFYLDRA--MDQGVASKTYKLMKAECLAHLNRLQEAQEI 174
+A R + T L+ ++ E+
Sbjct: 75 ------------VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 122
Query: 175 ANSILATDKQNPDAV 189
A I ++
Sbjct: 123 ALQIEELRQEKGFLA 137
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 29.9 bits (66), Expect = 2.0
Identities = 51/281 (18%), Positives = 102/281 (36%), Gaps = 17/281 (6%)
Query: 130 EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAV 189
EA + A+F L + + S + ++ + A LQEA ++ L+++K+
Sbjct: 534 EAGFNKVAVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKA 593
Query: 190 F------VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
D++ A + L+ +H + + K K + +
Sbjct: 594 LNFNKAVAEAKSTGNYDEVKKAQKDLEKSLR-KREHLEKEVEKKLESKSGNKNKMEAKAQ 652
Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
+ E F + + DAR I L + + K+ K ++ + D + + ++ N
Sbjct: 653 ANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNG 712
Query: 304 L-KALSRRCKCFHAL-GQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKI 361
K S+ + AL G K+ I+ E I K++N N + K KD+ K
Sbjct: 713 KNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKN-------KDFSK- 764
Query: 362 LGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEK 402
+ K+ + +K + + D A K +
Sbjct: 765 VTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKAMGDF 805
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 28.5 bits (64), Expect = 2.1
Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 6/122 (4%)
Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTY---KLMKAECLAHLNRLQEAQEIANSI 178
+ A A + Y A ++ E Q A+ +
Sbjct: 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL 65
Query: 179 LATDKQN---PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK 235
++ + + GL Y + K A Q + P A+ +R + ++
Sbjct: 66 VSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125
Query: 236 KE 237
++
Sbjct: 126 QQ 127
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_B
Length = 310
Score = 29.7 bits (66), Expect = 2.2
Identities = 26/179 (14%), Positives = 47/179 (26%), Gaps = 11/179 (6%)
Query: 14 QYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSK 73
Y +K ++ + N A +LG +L+ + D
Sbjct: 76 LYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGT 135
Query: 74 GLIRQIKCNIAL--GDAPTARSNLKALQELDPDNPAIAQES--KALETMAKNFEGASKAF 129
+ + +AL + TA + D + E E+ K A
Sbjct: 136 TELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETAT 195
Query: 130 EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDA 188
FY + Q + +L + EAQ I +L+
Sbjct: 196 SN-------FYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQK 247
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria
phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Length = 87
Score = 27.8 bits (62), Expect = 2.3
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 329 KIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDR 388
K+Y D++ + AKRLL + + + K D+ +
Sbjct: 3 KVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIG 62
Query: 389 HT 390
T
Sbjct: 63 LT 64
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 28.7 bits (64), Expect = 2.4
Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 9/106 (8%)
Query: 203 DLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262
DL + + A ++ A L K + ++ + E L
Sbjct: 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDD-------IRKGIVLLEELLPKG 65
Query: 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALS 308
++ + + A +++ +Y +A+ L+ +P +A
Sbjct: 66 SKEEQRDY--VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 27.9 bits (62), Expect = 2.4
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
E + L + N A+ + + + A++ + LLL
Sbjct: 27 EVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75
Score = 26.0 bits (57), Expect = 9.6
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 12/63 (19%)
Query: 89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG 148
L+ +L+P N AL +A + F + ++ A+ +D
Sbjct: 26 DEVSLLLEQALQLEPYNE------AALSLIA------NDHFISFRFQEAIDTWVLLLDSN 73
Query: 149 VAS 151
+
Sbjct: 74 DPN 76
>3jq1_A SUSD superfamily protein; structural genomic center for structural
genomics, JCSG, protein structure INI PSI-2, RAGB; HET:
MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Length = 481
Score = 29.7 bits (67), Expect = 2.5
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 156 LMKAECLAHLNRLQEAQEIANSI 178
LM AE + L + N I
Sbjct: 365 LMLAEAYMNKGALDTSIGYINQI 387
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics,
protein initiative, northeast structural genomics
consortium; NMR {Salmonella enterica subsp}
Length = 121
Score = 28.1 bits (63), Expect = 3.1
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 338 ENHNFLEEAKRLLKR-SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHP 386
+ + A+RL +R + + Y + + D+ A H+P
Sbjct: 64 DTSGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYP 113
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 28.7 bits (65), Expect = 4.0
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 325 IDAEK-IYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTK-NASSDDIKKAYRK 379
+D I+ +N + E+ R E+++ + V + S+ + ++
Sbjct: 196 LDGAMHIFPPAQYDKNFTWWEKF-----RQEIEEVKPVYLVGEVWDISETVAPYFKY 247
>3nqp_A SUSD superfamily protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.90A {Bacteroides fragilis nctc 9343}
Length = 514
Score = 29.0 bits (65), Expect = 4.1
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 156 LMKAECLAHLNRLQEAQEIANSI 178
L AE + N +
Sbjct: 387 LTLAEIANMEGDNAAVAKYINLV 409
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural
genomics, joint center for structu genomics, JCSG; 2.05A
{Pseudomonas putida} SCOP: a.25.1.7
Length = 206
Score = 28.0 bits (62), Expect = 5.7
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 194 LCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL 232
L +Y + H+Q LKLA ++ + + +L+
Sbjct: 141 LGRFYHGLLKSEARHYQGYLKLAHNYGDEADIARCVELV 179
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics,
protein structure initiative; NMR {Pectobacterium
atrosepticum}
Length = 118
Score = 26.9 bits (60), Expect = 5.9
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 338 ENHNFLEEAKRLLKR-SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHP 386
E +LE A R+ + + + Y + + + D++ A +K HH
Sbjct: 68 EKLGYLEIAMRVKQYATAIMRYAVQQKMIRFNPAYDLEGAVQKLEHHHHH 117
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding,
virulence gangrene determinant, C2 domain; 1.80A
{Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A
1qmd_A 1ca1_A 1gyg_A 1kho_A
Length = 370
Score = 28.4 bits (62), Expect = 6.2
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 96 KALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM 145
+ + A + + K A ++ +Y+ A FYL AM
Sbjct: 76 NNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAM 125
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 65
Score = 25.6 bits (56), Expect = 8.1
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 359 YKILGVTK---NASSDDIKKAYRKRALVHHPDRHTNATQAQKLE--QEKLFKEVGE 409
KIL + + + + D I + V+ ++ + K+ E+L E+ +
Sbjct: 7 CKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELAQ 62
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG;
3.00A {Homo sapiens} PDB: 4ap6_A*
Length = 408
Score = 27.8 bits (61), Expect = 8.8
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 392 ATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHA 439
AT A + E E+L K + E + Y G + D + HA
Sbjct: 310 ATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDGGVAIIDQWICAHA 357
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function;
2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Length = 126
Score = 26.7 bits (59), Expect = 9.9
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 248 NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKAL 307
++ + E L ++ + + A +++ +Y +A+ L+ +P +A
Sbjct: 54 IRKGIVLLEELLPKGSKEEQRDY--VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111
Query: 308 S 308
Sbjct: 112 E 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.377
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,121,380
Number of extensions: 436116
Number of successful extensions: 2820
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1633
Number of HSP's successfully gapped: 533
Length of query: 470
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 373
Effective length of database: 3,993,456
Effective search space: 1489559088
Effective search space used: 1489559088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)