BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16215
(1041 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|350412770|ref|XP_003489756.1| PREDICTED: DNA polymerase eta-like [Bombus impatiens]
Length = 818
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/463 (54%), Positives = 317/463 (68%), Gaps = 29/463 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ LIDMDCF+CQVE KL P GKPLAVVQYN WK GGIIAVNYEAR GVTRHMRG+
Sbjct: 8 RVVVLIDMDCFFCQVETKLQPEYAGKPLAVVQYNQWKLGGIIAVNYEAREYGVTRHMRGE 67
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP+I L VP +RGKAD S+YR+AGREVI V+ + NI+ERAS+DEAY+D+TD+V
Sbjct: 68 EAKEKCPDIVLASVPCLRGKADTSRYRSAGREVINVIKKHCNIIERASVDEAYLDITDLV 127
Query: 124 HERMK----SIGHIAASQLSNTFVVGFGP-DNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
+RM S+ H+ +QLSNTFVVG+ NDE+ R G W+ V+ EN
Sbjct: 128 CKRMSTYSISLNHLV-TQLSNTFVVGYSEVGKNDEEERSKGTETWIMNVF--------EN 178
Query: 179 TEDF--QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
ED Q+LAIAG+IVEEIRA + KT F CSAGIA NK+LAKL CGLHKP +Q+ILP +
Sbjct: 179 LEDIEAQKLAIAGLIVEEIRADIFDKTGFRCSAGIAGNKILAKLACGLHKPNRQTILPAA 238
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
+VS LY+ L IKKVR+LGGK GD VVE+L C+ M +L ++SL+ LQ F+EKT SWLY I
Sbjct: 239 AVSTLYSTLPIKKVRNLGGKFGDVVVESLNCNVMGDLLQYSLQYLQKRFDEKTGSWLYNI 298
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
ARGID+EPVN RLVSKSIG CK+FPGK + + + HW EL+ EVCERLE DL N+R
Sbjct: 299 ARGIDNEPVNIRLVSKSIGACKKFPGKQAIVSLDVLEHWAGELSAEVCERLEQDLEENER 358
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLF 416
RA L+T+ + + S SRS L SYK ++ +Q+I+K+ P+ +
Sbjct: 359 RATLMTICYQYYQNKATVSQSRSCTLNSYKPGNMAIRCVQIISKSTQC--------PIAY 410
Query: 417 LGLSASKFSPLGSHPSIQQFFKPQDHPEPMTSEHSSLPEQSTN 459
LG+SA KF P + + FFK + EP H + Q+ N
Sbjct: 411 LGISAGKFIPAKGSGNFRNFFK-SNESEP----HKKIDAQTEN 448
>gi|340710696|ref|XP_003393922.1| PREDICTED: DNA polymerase eta-like [Bombus terrestris]
Length = 820
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/463 (53%), Positives = 315/463 (68%), Gaps = 29/463 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ LIDMDCF+CQVE KL P GKPLAVVQYN WK GGIIAVNYEAR GVTRHMRG+
Sbjct: 8 RVVVLIDMDCFFCQVETKLQPEYAGKPLAVVQYNQWKLGGIIAVNYEAREYGVTRHMRGE 67
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP++ L VP +RGKAD S+YR+AGREVI V+ + NI+ERAS+DEAY+D+TD+V
Sbjct: 68 EAKEKCPDVVLASVPCLRGKADTSRYRSAGREVINVIKKHCNIIERASVDEAYLDITDLV 127
Query: 124 HERMK----SIGHIAASQLSNTFVVGFGP-DNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
++M S+ H+ +QLSNTFVVG+ NDE+ R G W+ V+ EN
Sbjct: 128 CKKMSTYSISLNHLV-TQLSNTFVVGYSEVGKNDEEERSKGTKTWIMNVF--------EN 178
Query: 179 TEDF--QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
ED Q+LAIAG+IVEEIRA + KT F CSAGIA NK+LAKL CGLHKP +Q+ILP +
Sbjct: 179 LEDIEAQKLAIAGLIVEEIRADIFDKTGFRCSAGIAENKILAKLACGLHKPNRQTILPAT 238
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
+VS LY+ L IKKVR+LGGK G VVE+L C+ M +L ++SL+ LQ F+EKT WLY I
Sbjct: 239 AVSTLYSTLPIKKVRNLGGKFGTVVVESLNCNVMGDLVQYSLQYLQKRFDEKTGLWLYNI 298
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
ARGID+EPVN RLVSKSIG CK+FPGK + + + HW EL+ EVCERLE DL N+R
Sbjct: 299 ARGIDNEPVNIRLVSKSIGACKKFPGKQAIVSLDVLEHWAGELSAEVCERLEQDLEENER 358
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLF 416
RA L+T+ + + S SRS L SYK ++ +Q+I+K+ P+ +
Sbjct: 359 RATLMTICYQYYQNKATVSQSRSCTLNSYKPGNMAIRCVQIISKSTQC--------PIAY 410
Query: 417 LGLSASKFSPLGSHPSIQQFFKPQDHPEPMTSEHSSLPEQSTN 459
LG+SA KF P + + FFK + EP H + Q+ N
Sbjct: 411 LGISAGKFIPAKGSGNFRNFFK-SNESEP----HKKIDAQTKN 448
>gi|380014904|ref|XP_003691455.1| PREDICTED: DNA polymerase eta-like [Apis florea]
Length = 700
Score = 491 bits (1263), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/438 (53%), Positives = 310/438 (70%), Gaps = 17/438 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RI+ LIDMDCF+CQVE KL P GKPLAVVQYN W+ GGIIAVNYEAR GVTRHMRG+
Sbjct: 8 RIVVLIDMDCFFCQVETKLQPQYIGKPLAVVQYNQWQLGGIIAVNYEAREYGVTRHMRGE 67
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP++ L VP +RGKADIS+YRNAGREVI ++ E N++ERAS+DEAY+D+TD+V
Sbjct: 68 EAKEKCPDLILVSVPCLRGKADISRYRNAGREVINIIKEHCNVIERASVDEAYLDITDMV 127
Query: 124 HERMKSIGHIA--ASQLSNTFVVGFGP-DNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
H+RM + + + A+QLSNTFVVG+ NDE+ R G+ W+ V+ + E+ E
Sbjct: 128 HKRMSTNLNFSDLATQLSNTFVVGYSEIGKNDEEERSKGIKTWIKNVFEE-----FEDIE 182
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
Q+LAIAG+IVE+IR + K F CSAGIA NK+LAKL CGLHKP +Q+ILP ++V
Sbjct: 183 A-QKLAIAGLIVEKIRTDISDKIGFKCSAGIAQNKILAKLACGLHKPNRQTILPAAAVLT 241
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
LY+ L IKKVR+LGGK GD V E+L C+ M +L ++SL+ LQ F+EKT WLY IARGI
Sbjct: 242 LYSTLPIKKVRNLGGKFGDIVTESLNCNVMGDLLQYSLQYLQKRFDEKTGLWLYNIARGI 301
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D+EPV RLVSKSIG CK+FPGK + + + HWI EL+ E+CERLE DLT N+RRA L
Sbjct: 302 DNEPVTVRLVSKSIGACKKFPGKQAITSLNMLKHWISELSAEICERLEQDLTENERRATL 361
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLS 420
+T+ + + + S SRS L SYK +++ + +++K+ P+ +LG+S
Sbjct: 362 VTICYHYYQNKTIVSQSRSYTLNSYKPKNMTIRCVNIVSKSTQC--------PIAYLGIS 413
Query: 421 ASKFSPLGSHPSIQQFFK 438
ASKF + + + FFK
Sbjct: 414 ASKFIAVKGSKNFRNFFK 431
>gi|197245419|ref|NP_001127801.1| DNA-directed DNA polymerase eta [Nasonia vitripennis]
Length = 753
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/442 (54%), Positives = 300/442 (67%), Gaps = 20/442 (4%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
+ +RI+ LIDMDCF+CQVE +L P GKPLAVVQYN WK GGIIAVNYEAR GVTRHM
Sbjct: 4 LGNRIVVLIDMDCFFCQVETRLKPEHAGKPLAVVQYNQWKLGGIIAVNYEARDFGVTRHM 63
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
RG+EAK+ CP+I L VPS RGKAD S+YR+AGREVI VL ++ NIVERAS+DEAY+D+T
Sbjct: 64 RGEEAKEKCPDIVLAIVPSQRGKADTSRYRSAGREVIDVLKKYCNIVERASVDEAYLDIT 123
Query: 121 DVVHERM-KSI--GHIAASQLSNTFVVGFG-PDNNDEDARKAGVMEWLGQVYSDTDTSLM 176
+V +++ K I + QL N+++VGF D N+E+ R G+ +WL ++ D
Sbjct: 124 QIVDDKLSKEIIDSDSISKQLENSYIVGFSESDINNEEQRSKGLQDWLSELADDIQ---- 179
Query: 177 ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
Q LAIAG VE IR V T F CSAGI+ NK+LAKL CGLHKP +Q+ILP S
Sbjct: 180 -----IQRLAIAGAFVEHIRKEVYDTTGFRCSAGISFNKILAKLACGLHKPNRQTILPAS 234
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
+V LY +L +KKVR+LGGKLGD V+++L+C+ M +L +SL+ LQ+ F+EKT WLY I
Sbjct: 235 AVPELYGSLPVKKVRNLGGKLGDMVIDSLKCNVMADLLPYSLQYLQNRFDEKTGMWLYNI 294
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
ARGID EPV RLVSKSIG CKRFPGK + + HWI EL+ EVCERLE DL N+R
Sbjct: 295 ARGIDSEPVTPRLVSKSIGACKRFPGKQAIVELDVLKHWIGELSAEVCERLEQDLEENER 354
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLF 416
+A L VSF D K+ S SR++AL SYK + + E S+ ++ K IS F
Sbjct: 355 KASQLIVSFQYCQDKKLVSQSRTVALTSYKQEKVAEQSLNIVVKATQQLLIS-------F 407
Query: 417 LGLSASKFSPLGSHPSIQQFFK 438
LGLSA KF + FFK
Sbjct: 408 LGLSAGKFIKAKGSENFMNFFK 429
>gi|307200513|gb|EFN80675.1| DNA polymerase eta [Harpegnathos saltator]
Length = 827
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/436 (52%), Positives = 306/436 (70%), Gaps = 16/436 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RI+ LIDMDCF+CQVE KL P GKPLAVVQYN W+ GGIIAVNYEAR+ GVTRHMRG
Sbjct: 6 RIVVLIDMDCFFCQVETKLQPQYAGKPLAVVQYNQWEMGGIIAVNYEARNFGVTRHMRGK 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP+I L VP +RGKAD ++YR AG EVI V+ + N++ERAS+DEAY+D+TD+V
Sbjct: 66 EAKEKCPDIVLASVPCLRGKADTTRYRKAGHEVIKVIRKHCNVIERASVDEAYLDITDIV 125
Query: 124 HERMKSIG-HIAASQLSNTFVVGFGP-DNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+R+ I + S L+NTFVVG+ +DE+ R G+ W+ + + +
Sbjct: 126 EKRLDKISSNELISSLANTFVVGYSEIGKSDEEERHKGLQTWILDSFKEL------HDIQ 179
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q+LA+AG+IVEEIRA++ ++T F CSAGI+ NK+LAKL CGLHKP +Q+ILP+++V+ L
Sbjct: 180 AQKLAVAGMIVEEIRASIYNETGFRCSAGISQNKILAKLACGLHKPNRQTILPEAAVASL 239
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
Y+ LS+KKVR+LGGK GD VVE+L C+ M +L ++SL+QLQ HF+EKT WLY IARGID
Sbjct: 240 YSTLSVKKVRNLGGKFGDVVVESLGCNVMGDLMQYSLEQLQKHFDEKTGLWLYNIARGID 299
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLL 361
+EPV RL+SKS+G CK+FPGK + + + + HW +LA EVCERLE DL N+RRA LL
Sbjct: 300 NEPVTNRLLSKSVGACKKFPGKQAITSLEVLKHWAGDLAAEVCERLEQDLIENQRRATLL 359
Query: 362 TVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSA 421
T+S+ + S SRS+ L SYK + + + VI K+ P+ ++G+ A
Sbjct: 360 TISYHYYQNRSTVSQSRSLILNSYKPEKMASQCVDVITKSTQC--------PVAYIGIVA 411
Query: 422 SKFSPLGSHPSIQQFF 437
SKF P S +FF
Sbjct: 412 SKFVPSKESGSFLKFF 427
>gi|328786259|ref|XP_001122310.2| PREDICTED: DNA polymerase eta [Apis mellifera]
Length = 689
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/438 (53%), Positives = 304/438 (69%), Gaps = 17/438 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RI+ LIDMDCF+CQVE KL P GKPLAVVQYN W+ GGIIAVNYEAR GVTRHMRG
Sbjct: 8 RIVVLIDMDCFFCQVETKLQPQYAGKPLAVVQYNQWQLGGIIAVNYEAREYGVTRHMRGK 67
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP++ L VP +RGKADIS+YR+AG EVI V+ E NI+ERAS+DEAY+D+TD+V
Sbjct: 68 EAKEKCPDLILVSVPCLRGKADISRYRSAGCEVINVIKEHCNIIERASVDEAYLDITDMV 127
Query: 124 HERMKSIGHIA--ASQLSNTFVVGFGP-DNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
H+RM + + + A+QLSNTFVVG+ NDE+ R G W+ ++ + E+ E
Sbjct: 128 HKRMSTNLNFSNLATQLSNTFVVGYSEIGKNDEEERSKGTKIWIKNIFEE-----FEDIE 182
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
Q+ AIAG+IVE+IRA + K F CSAGIA NK+LAKL CGLHKP +Q+ILP ++V
Sbjct: 183 A-QKFAIAGLIVEKIRADIFDKIGFKCSAGIAQNKILAKLACGLHKPNRQTILPAAAVLT 241
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
LY+ L IKKVR+LGGK G V E+L C+ M +L ++ L+ LQ F+EKT WLY IARGI
Sbjct: 242 LYSTLPIKKVRNLGGKFGHIVTESLNCNVMGDLLQYPLQYLQKRFDEKTGLWLYNIARGI 301
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D+EPVN RLVSKSIG CK+FPGK + + + HWI EL+ E+CERLE DL N+RRA L
Sbjct: 302 DNEPVNVRLVSKSIGACKKFPGKQAIISLNMLKHWISELSAEICERLERDLMENERRATL 361
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLS 420
+T+ + + S SRS L SYK +++ + +++K+ P+ +LG+S
Sbjct: 362 VTICYHYYQNKTTVSQSRSYTLNSYKPKNMTIRCVDIVSKSTQC--------PIAYLGIS 413
Query: 421 ASKFSPLGSHPSIQQFFK 438
ASKF + + + FFK
Sbjct: 414 ASKFITVKGSENFRNFFK 431
>gi|383850772|ref|XP_003700950.1| PREDICTED: DNA polymerase eta-like [Megachile rotundata]
Length = 774
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/442 (52%), Positives = 307/442 (69%), Gaps = 22/442 (4%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
++I+ LIDMDCF+CQVE K P GKPLAVVQYN WK GGIIAVNYEAR GVTRHMRG
Sbjct: 7 NKIVVLIDMDCFFCQVETKRRPEYTGKPLAVVQYNQWKLGGIIAVNYEAREYGVTRHMRG 66
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+EAKQ C ++ L VP RGKAD S+YR+AGR+V+ V+ + NI+ERAS+DEAY+D+TD+
Sbjct: 67 EEAKQKCADLILASVPCTRGKADTSRYRSAGRDVLNVIKKHCNIIERASVDEAYLDITDI 126
Query: 123 VHERMKSI---GHIAASQLSNTFVVGFGP-DNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
V +RM + +QLSNTF+VG+ NDE+ R+ GV WL T++ E
Sbjct: 127 VAKRMSTSFLSQEYLVTQLSNTFIVGYSEIGKNDEEQRRKGVNAWL--------TNIFEE 178
Query: 179 TEDFQ--ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
ED Q ELA+AGVIVEE+R + ++T F CSAGI++NK+LAKL CGLHKP +Q+ILP +
Sbjct: 179 LEDVQAQELALAGVIVEELRQDIYNETGFKCSAGISNNKILAKLACGLHKPNRQTILPPN 238
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
+VS LY+ L IKKVR+LGGK GD V+E+L C+ M +L ++SL+ LQ F++KT WLY I
Sbjct: 239 AVSELYSTLPIKKVRNLGGKFGDVVIESLNCNVMGDLLQYSLQYLQKRFDDKTGLWLYNI 298
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
ARGID+EPV RL+SKSIG CK+FPGK + + + HW ++A EVCERLE DL N+R
Sbjct: 299 ARGIDNEPVTTRLISKSIGACKKFPGKQAITSVDVLRHWAGDMAAEVCERLEQDLQENER 358
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLF 416
RA LLTV + + + SRS L SYK + + + +++I K+ P+ F
Sbjct: 359 RATLLTVCYHYYQNKSTVTQSRSCNLNSYKPEKMADRCVEIICKSTQC--------PIAF 410
Query: 417 LGLSASKFSPLGSHPSIQQFFK 438
LG+SA KF P + +++ FFK
Sbjct: 411 LGISAGKFVPAKDNQNLKNFFK 432
>gi|322796130|gb|EFZ18706.1| hypothetical protein SINV_03879 [Solenopsis invicta]
Length = 818
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/450 (51%), Positives = 310/450 (68%), Gaps = 29/450 (6%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+RI+ LIDMDCF+CQVE KL P GKPLAVVQYN WK GGIIAVNYEAR GVTRHMRG
Sbjct: 6 NRIVVLIDMDCFFCQVETKLQPQYQGKPLAVVQYNPWKMGGIIAVNYEARSFGVTRHMRG 65
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP+I L VP +RGKAD S+YR AGREVI V+ + N++ERAS+DEAY+D+TD+
Sbjct: 66 KEAKEKCPDIVLASVPCLRGKADTSRYRKAGREVIQVIKKHCNVIERASVDEAYLDITDI 125
Query: 123 VHERMKSIGHIAASQ----LSNTFVVGFGP-DNNDEDARKAGVMEWLGQVYS---DTDTS 174
V +R+ + ++ + L+NT+VVG+ NDE+ R G+ W+ ++ D T
Sbjct: 126 VDKRL-ATSKVSPKEVILSLANTYVVGYSEVGKNDEEERYQGLQTWILDSFNELHDIQT- 183
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
Q LA+AG++VEE+R ++ +T F CSAGIA NK+LAKL CGLHKP +Q+ILP
Sbjct: 184 --------QRLAVAGIMVEEMRESIYRETGFRCSAGIAQNKILAKLACGLHKPNRQTILP 235
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
+ +VS LY+ L IKKVR+LGGK GD V+E+L C+ M +L ++SL+QLQ HF+EKT WLY
Sbjct: 236 EVAVSSLYSTLPIKKVRNLGGKFGDNVIESLGCNVMGDLMQYSLEQLQKHFDEKTGFWLY 295
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
IARGID EPV RL++KSIG CK+FPGK + + + + HW +LA EVCERLE+D N
Sbjct: 296 NIARGIDDEPVTNRLLAKSIGACKQFPGKQAITSLEMLKHWAGDLAAEVCERLEEDFVEN 355
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
+RRA LL +S+ + S +RS+ L SYKL+ + + VI+K L P+
Sbjct: 356 QRRATLLVISYHYYQNKSTISQTRSLTLNSYKLEKMACQCVDVISKF--------LQHPI 407
Query: 415 LFLGLSASKFSPLGSHPSIQQFF---KPQD 441
+F+G+SA+KF P S +FF KP+D
Sbjct: 408 VFVGISATKFVPSKESGSFLKFFQNVKPKD 437
>gi|347965825|ref|XP_321730.5| AGAP001404-PA [Anopheles gambiae str. PEST]
gi|333470336|gb|EAA01093.5| AGAP001404-PA [Anopheles gambiae str. PEST]
Length = 929
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/446 (50%), Positives = 293/446 (65%), Gaps = 13/446 (2%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCFYCQVE KLNP++ GKP+AVVQYN W+GGGIIAVNY AR +GVTRHMRGD
Sbjct: 15 RVVVLVDMDCFYCQVEEKLNPAIRGKPIAVVQYNPWQGGGIIAVNYPARAEGVTRHMRGD 74
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAKQHCPEIEL +VP VRGKAD+++YR AG+EV VL F+ ++ERASIDEAY+D+T+ V
Sbjct: 75 EAKQHCPEIELPQVPQVRGKADLTRYREAGKEVADVLKSFTPLLERASIDEAYLDITERV 134
Query: 124 ----HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK-AGVMEWLGQVYSDTDTSLMEN 178
HE + + +L+NTF VG+ +N E K + + G +E
Sbjct: 135 LTRIHEMNEGKFQLRPEKLANTFAVGY--ENIGEFITKLSNTFDPAGGTAESNSQERLEY 192
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
+ +L + IV EIRAAV +T F CSAGIAHNK+LAKL G HKP KQ+ILP +S+
Sbjct: 193 KKSDIKLLVGASIVNEIRAAVKERTGFECSAGIAHNKILAKLTAGFHKPNKQTILPINSI 252
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
LY L +KKV+ LGGKLGD+V E L+ M EL +F LQ HFE++ SW+Y +AR
Sbjct: 253 PKLYETLPLKKVKGLGGKLGDQVCEVLKIKFMSELVQFPESVLQQHFEQRMGSWMYLMAR 312
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
GID E V A+ SKSIGCCKRFPGK + + HW+ ELA EV ERLE DL N R A
Sbjct: 313 GIDLEAVTAKFHSKSIGCCKRFPGKNAITGLATLHHWLNELASEVTERLEKDLDENNRTA 372
Query: 359 QLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTN----SAPPISDLTPPL 414
+ LTVS++Q+ D S +RSIAL +Y + I ++ I + ++ + L P+
Sbjct: 373 KQLTVSYSQQIDNVDVSSTRSIALVAYDAERIAADALDAIKRNTERFFASNSTTALHNPI 432
Query: 415 LFLGLSASKFSP--LGSHPSIQQFFK 438
FLG+SA KF P G I+Q F+
Sbjct: 433 KFLGISAGKFEPNGAGKGAGIKQMFQ 458
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 891 IKESGDPNNEMCKSTVQFHSNSINKGNGNADVSPMDTVDIINTIADSSTVDSAINIADPT 950
I ES DP E ++ ++ + + N D P D T A+ S + +P
Sbjct: 682 IHESEDPPEEKPSTS---KASFVERSNARTDAKP----DYKETYAEYS-----FQVPEPN 729
Query: 951 KIICDKCSQPIDINELQEHQDYHFALELS 979
+ C +C +PI +E Q HQD+HFAL LS
Sbjct: 730 -LECPQCKKPIPEHEFQSHQDFHFALSLS 757
>gi|157106621|ref|XP_001649408.1| DNA polymerase eta [Aedes aegypti]
gi|108879827|gb|EAT44052.1| AAEL004562-PA [Aedes aegypti]
Length = 852
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/440 (50%), Positives = 290/440 (65%), Gaps = 30/440 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCFYCQVE KLNP + GKP+AVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 15 RVVVLVDMDCFYCQVEEKLNPEIRGKPIAVVQYNPWQGGGIIAVNYPARAKGVTRHMRGD 74
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAKQHCP+I L +VP VRGKADISKYR AG+EV AVL F+ ++ERAS+DEAY+D+T+ V
Sbjct: 75 EAKQHCPDIVLPQVPQVRGKADISKYREAGKEVAAVLQTFTPLLERASVDEAYLDITERV 134
Query: 124 HERMKSIG----HIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSL---- 175
R++ + + +L+NTF VG+ + E++ ++ D D +
Sbjct: 135 LARLRDMNEGKFQLLPDKLANTFAVGYD-----------SIGEFVQKISGDLDGRVSSQE 183
Query: 176 MENTEDFQ-------ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQ 228
+E+ ED +L I IV EIRAAV KT + CSAGIAHNK+LAKL G HKP
Sbjct: 184 LESEEDRVAYKKSDIKLLIGASIVNEIRAAVKEKTGYECSAGIAHNKILAKLTAGFHKPN 243
Query: 229 KQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEK 288
KQ+ILP +S +Y LS+KKV+ LGGKLGD+V E L+ TM EL KF K LQ+HF+++
Sbjct: 244 KQTILPLKCISKMYETLSLKKVKGLGGKLGDQVCELLKIQTMSELAKFPEKVLQNHFDDR 303
Query: 289 TASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
SW+Y +A+GID E V + SKSIGCCKRFPGK ++ + HW+ ELA+E+ ERLE
Sbjct: 304 MGSWMYLMAKGIDLEAVTPKFNSKSIGCCKRFPGKNAISGIATLKHWLGELANEIQERLE 363
Query: 349 DDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPIS 408
DL N R A+ +TVS+ Q+ S +RS+ L Y + I +++ I + S
Sbjct: 364 KDLDENNRTAKQMTVSYAQQFGQNDVSSTRSVPLVGYNAERIAADALEAIKRNTDVFLKS 423
Query: 409 D----LTPPLLFLGLSASKF 424
D L P+ FLG+SA KF
Sbjct: 424 DSSGALNKPIKFLGISAGKF 443
>gi|332030091|gb|EGI69916.1| DNA polymerase eta [Acromyrmex echinatior]
Length = 787
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/440 (48%), Positives = 287/440 (65%), Gaps = 44/440 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RI+ LIDMDCF+CQVE KL P GKPLAVVQYN W+ GGIIAVNYEAR GVTRHMRG
Sbjct: 7 RIVVLIDMDCFFCQVEIKLQPQHEGKPLAVVQYNQWEMGGIIAVNYEARSFGVTRHMRGK 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP+I L VP +RGKAD S+YR AGREVI V+ + N++ERAS+DEAY+D+TD+V
Sbjct: 67 EAKEKCPDIVLVSVPCLRGKADTSRYRKAGREVIQVIKKHCNVIERASVDEAYLDITDIV 126
Query: 124 HERMKSIGHIAASQL----SNTFVVGFGPDN-NDEDARKAGVMEWLGQVYSDTDTSLMEN 178
+R+ + ++ QL +NT+VVG+ N N+E+ R G+ W+ + + +
Sbjct: 127 DKRLAA-SKVSPKQLISFLANTYVVGYSEINKNNEEERCKGLQTWILNSFKEL------H 179
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
+ Q+LAIAG+I+ LAKL CGLHKP +Q+ILP+++V
Sbjct: 180 DDQAQKLAIAGIII------------------------LAKLACGLHKPNRQTILPEAAV 215
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
S LY+ L +KKVR+LGGK GD VVE+L C M +L ++SL+QL+ HF+EKT WLY IAR
Sbjct: 216 SSLYSTLPVKKVRNLGGKFGDVVVESLGCKVMGDLLQYSLEQLKKHFDEKTGFWLYNIAR 275
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
GID EPV RL++KSIG CK+FPGK + + + + HW +LA EVCERLE+D N+RRA
Sbjct: 276 GIDDEPVTNRLLAKSIGACKKFPGKQAITSLEVLKHWAGDLAAEVCERLEEDFIENQRRA 335
Query: 359 QLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLG 418
LL +S+ + S +RS+AL SYK + + + VI K+ P+ F+G
Sbjct: 336 TLLVISYHYYHNRSTVSQTRSLALNSYKPEKMANQCVDVITKSTQY--------PVAFMG 387
Query: 419 LSASKFSPLGSHPSIQQFFK 438
+S +KF P S +FFK
Sbjct: 388 ISVTKFVPSKESGSFLKFFK 407
>gi|170034418|ref|XP_001845071.1| DNA polymerase eta [Culex quinquefasciatus]
gi|167875704|gb|EDS39087.1| DNA polymerase eta [Culex quinquefasciatus]
Length = 820
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/460 (46%), Positives = 292/460 (63%), Gaps = 42/460 (9%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCFYCQVE KLNP + G+P+AVVQYN W+GGGIIAVNY AR +GVTRHMRGD
Sbjct: 15 RVVVLVDMDCFYCQVEEKLNPEIKGQPIAVVQYNPWQGGGIIAVNYPARARGVTRHMRGD 74
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA+QHCPEI L +VP GKADISKYR+AG+EV AVL F+ ++ERAS+DEAY+D+T+ V
Sbjct: 75 EARQHCPEIVLPQVPQRGGKADISKYRDAGKEVAAVLQTFTPLLERASVDEAYMDITERV 134
Query: 124 HERMKSIG----HIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
R+ + H+ L NTF VG+ V +++ ++ D D
Sbjct: 135 LARLHDMNVGKFHLQPETLDNTFAVGY-----------ESVGQYVQKISCDLDGRSSSQE 183
Query: 180 EDFQ-----------ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQ 228
+ + +L I IV EIRAAV KT + CSAGIAHNK+LAKL G +KP
Sbjct: 184 LESEEDRVAYKKSDIKLLIGASIVNEIRAAVKEKTGYECSAGIAHNKILAKLTAGFNKPN 243
Query: 229 KQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEK 288
KQ++LP S+S LY L IKKV+ LGGKLG++V E L+ M +L +FS KQLQ+HF+E+
Sbjct: 244 KQTVLPLKSISKLYQTLQIKKVKGLGGKLGEQVCELLKIEFMSQLTQFSEKQLQAHFDER 303
Query: 289 TASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
SW+Y +ARGID E V + SKSIGCCKRFPGK + + HW+ ELA+E+ +RLE
Sbjct: 304 MGSWMYLMARGIDLEAVTPKFNSKSIGCCKRFPGKNAITGLATLQHWLGELANEIQDRLE 363
Query: 349 DDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINK-------- 400
DL N R A+ +TVS+ Q+ S +RS+ L Y+ + I + +++ I +
Sbjct: 364 KDLDENNRTARQMTVSYAQQIGDNDVSSTRSVPLVCYEAERIAKDALEAIRRNTEVFLKQ 423
Query: 401 -TNSAPPISDLTPPLLFLGLSASKF--SPLGSHPSIQQFF 437
+N A L + FLG+SA KF + G ++++ F
Sbjct: 424 GSNGA-----LNNAVKFLGISAGKFENNATGKKSALKEMF 458
>gi|91094387|ref|XP_971192.1| PREDICTED: similar to DNA polymerase eta [Tribolium castaneum]
gi|270014910|gb|EFA11358.1| hypothetical protein TcasGA2_TC011515 [Tribolium castaneum]
Length = 679
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/438 (48%), Positives = 286/438 (65%), Gaps = 21/438 (4%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
T R++ L+DMDCFYCQVE KLNP+L GKP+AVVQYN W+GGGIIAVNY AR +GVTRHMR
Sbjct: 4 TDRVVVLVDMDCFYCQVEEKLNPALEGKPIAVVQYNAWQGGGIIAVNYPARDEGVTRHMR 63
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
G EAK+ CP I L +VP +RGKAD++KYR+AG+ V VL F+ +++RAS+DEAY+D+T+
Sbjct: 64 GFEAKKKCPSINLVQVPELRGKADLTKYRDAGKRVADVLLTFTPLLQRASVDEAYLDITE 123
Query: 122 VVHERM-KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+V +R+ K + + LSNTFVVG + ++L ++ + S+
Sbjct: 124 IVEKRIEKGLDDLTLINLSNTFVVG------------CELEDFLHNAITNKEYSIPN--- 168
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+LA+ G++ EEIR V T + CSAGIAHNK+LAKLVC LHKP KQ+ILPQ V
Sbjct: 169 --LKLAVGGLVTEEIRREVFKVTGYKCSAGIAHNKILAKLVCSLHKPNKQTILPQEEVEK 226
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ I KV++LGGK G + E +TM +L K K L ++EKT +WL+ IARGI
Sbjct: 227 FFETTPINKVKNLGGKFGQTLSEDFHVTTMGQLAKIPEKLLVQKYDEKTGNWLHNIARGI 286
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D EPV +L++KSI CCK FPGKT L T ++V HW+ +LA E+ ERL+ DL N RRA+
Sbjct: 287 DMEPVTTKLIAKSIACCKNFPGKTALVTEENVQHWLGKLAAEMSERLDKDLKENNRRAKQ 346
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLS 420
+ VSF QE + K +R+ L SY Q I + + +V+ + SD T L FLGL+
Sbjct: 347 IIVSFAQEVNKKDVHSTRTHPLVSYNEQKIAQAAFEVVKRFCRK---SDGTYHLKFLGLN 403
Query: 421 ASKFSPLGSHPSIQQFFK 438
AS F + + I FF+
Sbjct: 404 ASSFDDIKNVRQITSFFQ 421
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 941 DSAINIADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSE-PPNSTSNISNSSSSSK 999
DS +++ + T++ C +C + I I+EL HQDYHFAL LS + PPN SN+ K
Sbjct: 520 DSEMSVEEETEL-CSECKKRIPISELMSHQDYHFALNLSRSENVPPN--SNVKTPPVVKK 576
Query: 1000 ILN--KKSSKR 1008
L+ KK+ KR
Sbjct: 577 SLDSMKKTRKR 587
>gi|357624213|gb|EHJ75075.1| DNA polymerase eta [Danaus plexippus]
Length = 785
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/435 (50%), Positives = 287/435 (65%), Gaps = 26/435 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RI+ LIDMDCFYCQVE KLNP L GKP+AVVQYN W+GGGIIAVNY AR GVTRHMRG+
Sbjct: 6 RIVVLIDMDCFYCQVEEKLNPQLKGKPIAVVQYNPWRGGGIIAVNYVARAMGVTRHMRGN 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAKQ CPEI+L VP RGKADI+KYR AG++V VL F+ ++ERASIDEAY+D+TD V
Sbjct: 66 EAKQKCPEIQLPSVPCFRGKADITKYREAGKDVAKVLQRFTPLLERASIDEAYLDITDPV 125
Query: 124 HERMKSIG--HIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+R+ +I I ++ L N F +G+ D D ++ V+S +S+ + E
Sbjct: 126 RKRILNIDVRDINSNMLPNNFALGY--DTLDS---------FISDVHSCGLSSMEFDYEH 174
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+ L + +IV EIRAAV ++T + CSAGIAHNK+LAKLVCG++KP KQ++LP+ SV++L
Sbjct: 175 SKHLLVGALIVSEIRAAVYAETGYQCSAGIAHNKILAKLVCGMNKPNKQTVLPKHSVNIL 234
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
Y LS+KKV+HLGGK GD V ETL STM +L++F+ K LQ+ F+EK SWLY IARG+D
Sbjct: 235 YKTLSLKKVKHLGGKFGDHVAETLNISTMGQLQRFTEKDLQARFDEKNGSWLYNIARGVD 294
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLL 361
EPV AR KSIGCCK+ GK L + W+++L DE+ RLE D N R + +
Sbjct: 295 LEPVQARFNPKSIGCCKQLRGKAALQDLVSLRKWLRDLGDEIENRLEQDSLENNRIPKQM 354
Query: 362 TVSFT-QETDGKVN-SCSRSIALA----------SYKLQDIVEVSMQVINKTNSAPPISD 409
VSF+ Q + GK + S SRS + S K ++V S + T+
Sbjct: 355 VVSFSLQASKGKRDISSSRSYNFSPEDELCGEIFSSKALELVMDSAEGCKPTDGELN-RM 413
Query: 410 LTPPLLFLGLSASKF 424
L P+ FLG+S KF
Sbjct: 414 LKSPITFLGISVGKF 428
>gi|94158209|ref|NP_001035337.1| DNA polymerase eta [Danio rerio]
gi|92098322|gb|AAI15308.1| Zgc:136881 [Danio rerio]
Length = 743
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 222/465 (47%), Positives = 291/465 (62%), Gaps = 25/465 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCFY QVE +L P L KP V QY TWKGGGIIAV+YEAR GV R+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRLKPELKNKPCVVAQYKTWKGGGIIAVSYEARAHGVGRNMFAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++++ RVP GKAD++ YR A EVI V+S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DARKLCPDLQVARVPEAHGKADLTHYREASVEVIEVMSRFA-VIERASIDEAYMDLTASV 125
Query: 124 HERMK--SIGHIAASQLSNTFVVGFGPDNN----DEDA-RKAGVMEWLGQVYSDTDTSLM 176
ER+K S+ I A QL NT + GF D DA R AG+ +WL + S T++S
Sbjct: 126 QERLKNTSVQDITAQQLKNTHIQGFPTQQENTHLDRDAQRAAGLQQWLDLLSSSTESSPA 185
Query: 177 ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
+ LA+ +IVE++RAAV T F CSAGI+HNKVLAKL CGL+KP +Q++LP S
Sbjct: 186 D-----LHLAVGALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLS 240
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
SV L++ L I K+R+LGGKLG + ETL M +L +FS QL+ HF +KT WLY +
Sbjct: 241 SVPQLFSTLPISKIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTGPWLYDL 300
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
RGI+ EPV R + KSIGC K F GKTCL T+Q V +W+ +LA E+ ERL D +N R
Sbjct: 301 CRGIEFEPVKPRQLPKSIGCSKNFAGKTCLRTKQQVQYWLHQLALELEERLNKDRDVNGR 360
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISD-LTPPLL 415
A+ LTV Q + S SR AL Y + S+ +I N+A + +P L
Sbjct: 361 VARQLTVGVRQAGGQRSGSFSRCCALVRYDAMKMTNDSLTIIKSLNTAGAHQEAWSPALT 420
Query: 416 FLGLSASKFS--PLGSHPSIQQFFKPQDHPEPMTSEHSSLPEQST 458
L LSASKFS P S I F ++S+ +S P QS+
Sbjct: 421 LLHLSASKFSDAPSSSSAGITGF---------LSSDAASSPSQSS 456
>gi|410901122|ref|XP_003964045.1| PREDICTED: DNA polymerase eta-like [Takifugu rubripes]
Length = 707
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/476 (46%), Positives = 297/476 (62%), Gaps = 20/476 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCFY QVE +LNP+L P V QY TWKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRLNPALKNTPCVVAQYKTWKGGGIIAVSYEARAHGVTRNMWVD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++++ RV GKAD++ YR A EVI V+S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLQVARVRESHGKADLTFYREASVEVIEVMSRFA-VIERASIDEAYMDLTAAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGFG------PDNNDEDARKAGVMEWLGQVYSDTDTSL 175
+R+K++ I A L T++ G+ P +++ R GV +WL + ++
Sbjct: 126 QQRLKNLNDSPIDAHLLKATYIQGYPQTTPERPAAAEDEQRSRGVQQWLAML---PLPAV 182
Query: 176 MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQ 235
E + +L + +IVEE+RAAV T F CSAGI+HNKVLAKL CGL+KP +Q++LP
Sbjct: 183 GEQSSAELQLTVGALIVEEMRAAVEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLLPL 242
Query: 236 SSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY 295
SV L+++L + K+R+LGGKLG + ETL M EL +FSL QL HF EKT WLY
Sbjct: 243 DSVRDLFSSLPVGKIRNLGGKLGASITETLGVENMGELTRFSLAQLGQHFGEKTGQWLYD 302
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
+ RGID E V R + KSIGC K FPGKT LAT++ V +W+ +LA E+ ERL D +N
Sbjct: 303 LCRGIDFEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLALELEERLTKDREVNG 362
Query: 356 RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISD-LTPPL 414
R A+LLTV Q D + NS SR AL Y+ + S +I N+A + TPPL
Sbjct: 363 RVAKLLTVGVRQLGDKRANSFSRCCALVRYEAPKLATDSFAIIRSLNTAGAHQETWTPPL 422
Query: 415 LFLGLSASKFSPLGSHPSIQQFFKPQDHPEPMTSEH--SSLPEQSTNHDSKKRDKT 468
L LSASKFS S I F +T+++ S+ P +H + KRD +
Sbjct: 423 AMLHLSASKFSDAPSAGGIAGFLSSD-----VTTQNVSSARPSAMQSHTTSKRDSS 473
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 897 PNNEMCKSTVQFHSNSINKGNGNADVSPMDTVDIINTIADSSTVDSAINIADPTKIICDK 956
P+ E+CK V ++N N SP + + N D+ A +++ + C++
Sbjct: 564 PDMEVCKDAVAV--ATLNSKLENVP-SPDEELGT-NADIDADVSAFAPSVSSEDLVSCER 619
Query: 957 CSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSS---------SSSKILNKKSSK 1007
C Q + + E+ EH DYHFAL+L + P ++ ++ SS +++ +K+
Sbjct: 620 CGQEVSVWEMPEHNDYHFALDLQNSLTSPVHSAALAVSSPPTPHRGATGAAQSCQRKTKS 679
Query: 1008 RGRPSKLNSFKNSENFKKLKTIDQFFK 1034
+ +P + S+ L T+D FFK
Sbjct: 680 KAQPGPQPKRQRSQG-GGLGTLDSFFK 705
>gi|73973002|ref|XP_532150.2| PREDICTED: DNA polymerase eta [Canis lupus familiaris]
Length = 712
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/431 (48%), Positives = 278/431 (64%), Gaps = 16/431 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGI+AV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIVAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ +LS F+ ++ERASIDEAYIDLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGILSRFA-VIERASIDEAYIDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNND-----EDARKAGVMEWLGQVYSDTDTS 174
ER++++ I+A L T++ G GP + E+ RK G+ +WL + D +TS
Sbjct: 126 QERLQNLQGQPISADLLPTTYIEGLPQGPTTAEGTDQKEETRKQGLFQWLDSLQIDNNTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPISKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT L TR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALTTREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ +D +PPL
Sbjct: 360 DRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFAVIKNCNTSGIKTDWSPPL 419
Query: 415 LFLGLSASKFS 425
L L A+KFS
Sbjct: 420 TMLFLCATKFS 430
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 21/105 (20%)
Query: 937 SSTVDSAINIADPTKIICDKCSQPIDINELQEHQDYHFALELSTTS-EPPNSTSNISNSS 995
S+T S + D ++ C+KC + + E+ EH DYHFALEL + +P +ST + +S
Sbjct: 620 STTTPSPMAAED--QVPCEKCGSLVPVWEMPEHTDYHFALELQKSFLQPHSSTMQVVPAS 677
Query: 996 SSSKILNKKS-----SKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
S SK N KS SKR RP + ++T++ FFKP
Sbjct: 678 SQSK-RNPKSPSASNSKRTRP------------EGMQTLESFFKP 709
>gi|431838335|gb|ELK00267.1| DNA polymerase eta [Pteropus alecto]
Length = 712
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/440 (47%), Positives = 285/440 (64%), Gaps = 22/440 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ +LS F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVLESRGKANLTKYREASVEVMEILSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDE-----DARKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L T++ G GP +E + RK G+++WL D+
Sbjct: 126 QERLQKLQGQPISADLLPTTYIEGLPQGPTTAEETVQKEEMRKRGLLQWL-------DSL 178
Query: 175 LMENT--EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI 232
+ENT D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q++
Sbjct: 179 QIENTNSPDLQ-LTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTL 237
Query: 233 LPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASW 292
+ SV L++++ I K+R+LGGKLG V+E L M EL +F+ QLQSHF EK SW
Sbjct: 238 VSHGSVPQLFSHIPISKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSW 297
Query: 293 LYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLT 352
LY + RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D
Sbjct: 298 LYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRN 357
Query: 353 LNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTP 412
N R A L VS + D ++++ R AL Y + + VI N++ ++ +P
Sbjct: 358 DNDRVATQLVVSIRVQGDKRLSTLRRCCALTRYDAHKMSHDAFAVIRNCNTSGVQTEWSP 417
Query: 413 PLLFLGLSASKFSPLGSHPS 432
PL L L A+KFS S PS
Sbjct: 418 PLTMLFLCATKFS--ASAPS 435
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 947 ADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKS- 1005
A+ ++ C+KC + + E+ EH DYHFALEL S + + SS+ +++ S
Sbjct: 627 ANEDQVPCEKCGSLVAVWEMPEHADYHFALEL--------QKSFLQSQSSNPRVVPASSP 678
Query: 1006 -SKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
SKR S L S + ++T++ FFKP
Sbjct: 679 QSKRNPKSPLASSNKRPRPEGMQTLESFFKP 709
>gi|60686908|gb|AAX35543.1| DNA polymerase eta [Xenopus laevis]
Length = 684
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/432 (49%), Positives = 285/432 (65%), Gaps = 18/432 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCFY QVE ++NP+L KP+ VVQY TWKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRMNPALKNKPVVVVQYKTWKGGGIIAVSYEARAFGVTRNMFAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ C +++L RV GKAD++ YR A EV+ V+S F+ +VERASIDEAYIDLTD V
Sbjct: 67 DAKKLCADLQLARVREAHGKADLTHYREASVEVMEVMSRFA-VVERASIDEAYIDLTDSV 125
Query: 124 HERMKSIG--HIAASQLSNTFVVGF---GPDNND---EDARKAGVMEWLGQV-YSDTDTS 174
+R++ +G I+ L NT+V GF G D + E+ R+ G+ +WL + D ++
Sbjct: 126 QKRLREMGVAPISGELLKNTYVQGFPQCGMDRDSLSKEELRRHGLEQWLESLPVGDPHSA 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
++ LA+ +IVEE+RAAV +T F CSAGIAHNKVLAKL CGL+KP +Q+IL
Sbjct: 186 DVK-------LAVGAIIVEEMRAAVEEETTFQCSAGIAHNKVLAKLACGLNKPNRQTILC 238
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
Q SV L++ L I K+RHLGGKLG + E L + +L +F+++ LQ+HF +KT SWLY
Sbjct: 239 QGSVPGLFSELPIGKIRHLGGKLGTSIKEILDVEYIGQLTQFTVQHLQNHFGDKTGSWLY 298
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+ EPV R + KSIGC K FPGKT L+TR+ V +W+ +L+ E+ RL+ D N
Sbjct: 299 SLCRGIEDEPVKPRQLPKSIGCSKNFPGKTSLSTREQVQYWLLQLSLELEGRLQKDRDAN 358
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPP-ISDLTPP 413
R A+LLTV Q S SR AL Y Q I + ++ N+A + +PP
Sbjct: 359 NRVAKLLTVGLNQMGKRLYGSMSRCCALTRYDAQKISSDAFVLLKSFNAAGMHQAAWSPP 418
Query: 414 LLFLGLSASKFS 425
L L LSASKFS
Sbjct: 419 LTLLQLSASKFS 430
Score = 39.7 bits (91), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 952 IICDKCSQPIDINELQEHQDYHFALEL--STTSEPPNSTSNISNSSSSSKILNKKSSKRG 1009
+ C+KC + + E+ EH DYHFA EL S ++ P+ + + + +K +K+
Sbjct: 601 MCCEKCGLKLLVWEIPEHMDYHFAQELQDSFSAPSPSRAPPVCAPALTPLARSKNKAKKS 660
Query: 1010 RPSKLNSFKNSENFKKLKTIDQFFK 1034
S + N +T+D FFK
Sbjct: 661 LASNAKRPRTDGN----RTLDAFFK 681
>gi|148227394|ref|NP_001087074.1| DNA-directed DNA polymerase eta [Xenopus laevis]
gi|50417752|gb|AAH77989.1| Polh-prov protein [Xenopus laevis]
Length = 684
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/432 (49%), Positives = 285/432 (65%), Gaps = 18/432 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCFY QVE ++NP+L KP+ VVQY TWKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRMNPALKNKPVVVVQYKTWKGGGIIAVSYEARAFGVTRNMFAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ C +++L RV GKAD++ YR A EV+ V+S F+ +VERASIDEAYIDLTD V
Sbjct: 67 DAKKLCADLQLARVREAHGKADLTHYREASVEVMEVMSRFA-VVERASIDEAYIDLTDSV 125
Query: 124 HERMKSIG--HIAASQLSNTFVVGF---GPDNND---EDARKAGVMEWLGQV-YSDTDTS 174
+R++ +G I+ L NT+V GF G D + E+ R+ G+ +WL + D ++
Sbjct: 126 QKRLREMGVAPISGELLKNTYVQGFPQCGMDRDSLSKEELRRHGLEQWLESLPVGDPHSA 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
++ LA+ +IVEE+RAAV +T F CSAGIAHNKVLAKL CGL+KP +Q+IL
Sbjct: 186 DVK-------LAVGAIIVEEMRAAVEEETTFQCSAGIAHNKVLAKLACGLNKPNRQTILC 238
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
Q SV L++ L I K+RHLGGKLG + E L + +L +F+++ LQ+HF +KT SWLY
Sbjct: 239 QGSVPGLFSELPIGKIRHLGGKLGTSIKEILDVEYIGQLTQFTVQHLQNHFGDKTGSWLY 298
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+ EPV R + KSIGC K FPGKT L+TR+ V +W+ +L+ E+ RL+ D N
Sbjct: 299 SLCRGIEDEPVKPRQLPKSIGCSKNFPGKTSLSTREQVQYWLLQLSLELEGRLQKDRDAN 358
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPP-ISDLTPP 413
R A+LLTV Q S SR AL Y Q I + ++ N+A + +PP
Sbjct: 359 NRVAKLLTVGLNQMGKRLYGSMSRCCALTRYDAQKISSDAFVLLKSFNAAGMHQAAWSPP 418
Query: 414 LLFLGLSASKFS 425
L L LSASKFS
Sbjct: 419 LTLLQLSASKFS 430
Score = 39.7 bits (91), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 952 IICDKCSQPIDINELQEHQDYHFALEL--STTSEPPNSTSNISNSSSSSKILNKKSSKRG 1009
+ C+KC + + E+ EH DYHFA EL S ++ P+ + + + +K +K+
Sbjct: 601 MCCEKCGLKLLVWEIPEHMDYHFAQELQDSFSAPSPSRAPPVCAPALTPLARSKNKAKKS 660
Query: 1010 RPSKLNSFKNSENFKKLKTIDQFFK 1034
S + N +T+D FFK
Sbjct: 661 LASNAKRPRTDGN----RTLDAFFK 681
>gi|402867082|ref|XP_003897697.1| PREDICTED: DNA polymerase eta isoform 1 [Papio anubis]
Length = 712
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/438 (47%), Positives = 282/438 (64%), Gaps = 18/438 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAYIDLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYIDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R+LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 360 DRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPL 419
Query: 415 LFLGLSASKFSPLGSHPS 432
L L A+KFS S PS
Sbjct: 420 TMLFLCATKFS--ASAPS 435
Score = 47.4 bits (111), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 925 MDTVDIINTIADSSTVDSAINI---ADPT--------KIICDKCSQPIDINELQEHQDYH 973
MD ++ SS SA+ + A PT ++ C+KC + + ++ EH DYH
Sbjct: 594 MDLAHNSQSMHASSASKSALEVTQKATPTPSILAAEDQVPCEKCGSLVPVWDMPEHMDYH 653
Query: 974 FALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFF 1033
FALEL + P+S SN S + ++ KR S L + ++T++ FF
Sbjct: 654 FALELQKSFLQPHS----SNPQVVSAVSHQ--GKRNPKSPLACTNKRPRPEGMQTLESFF 707
Query: 1034 KP 1035
KP
Sbjct: 708 KP 709
>gi|55626670|ref|XP_518497.1| PREDICTED: DNA polymerase eta isoform 4 [Pan troglodytes]
gi|410211556|gb|JAA02997.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410262340|gb|JAA19136.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410302290|gb|JAA29745.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330903|gb|JAA34398.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330905|gb|JAA34399.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330907|gb|JAA34400.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330909|gb|JAA34401.1| polymerase (DNA directed), eta [Pan troglodytes]
Length = 713
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/438 (47%), Positives = 281/438 (64%), Gaps = 18/438 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 360 DRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPL 419
Query: 415 LFLGLSASKFSPLGSHPS 432
L L A+KFS S PS
Sbjct: 420 TMLFLCATKFS--ASAPS 435
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 925 MDTVDIINTIADSSTVDSAINI---ADPT--------KIICDKCSQPIDINELQEHQDYH 973
MD ++ SS SA+ + A PT ++ C+KC + + ++ EH DYH
Sbjct: 595 MDLAHNSQSMHASSASKSALEVTQKATPTPSLLAAEDQVPCEKCGSLVPVWDMPEHMDYH 654
Query: 974 FALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFF 1033
FALEL + P+S SN S + ++ KR S L + ++T++ FF
Sbjct: 655 FALELQKSFLQPHS----SNPQVVSAVSHQ--GKRNPKSPLACTNKRPRPEGMQTLESFF 708
Query: 1034 KP 1035
KP
Sbjct: 709 KP 710
>gi|348501702|ref|XP_003438408.1| PREDICTED: DNA polymerase eta [Oreochromis niloticus]
Length = 685
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/449 (46%), Positives = 285/449 (63%), Gaps = 19/449 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCFY QVE +LNP+L P V QY TWKGG IIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRLNPALRNTPCVVAQYKTWKGGSIIAVSYEARAHGVTRNMWVD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++++ RV GKAD++ YR A EVI V+S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLQVARVRESHGKADLTNYREASVEVIEVMSRFA-VIERASIDEAYMDLTAAV 125
Query: 124 HERMKSIG--HIAASQLSNTFVVGFGPDN------------NDEDARKAGVMEWLGQVYS 169
+R+K++ I S L T++ G+ + + E+ R G+ +WL S
Sbjct: 126 QQRLKNMTDKQIEPSLLRTTYIQGYPQSSPAAEESAEDTVLDKEEQRSRGLQQWL---ES 182
Query: 170 DTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQK 229
T S+ E + +L + +IVEE+RAAV T F CSAGI+HNKVLAKL CGL+KP +
Sbjct: 183 LTFPSVGEQSSAELQLTVGALIVEEMRAAVEKHTGFRCSAGISHNKVLAKLACGLNKPNR 242
Query: 230 QSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKT 289
Q++LP SV+ L+++L + K+R+LGGKLG + ETL M +L +FS QL+ HF EKT
Sbjct: 243 QTVLPLDSVTELFSSLPVGKIRNLGGKLGTSITETLGIENMGDLTRFSKAQLEQHFGEKT 302
Query: 290 ASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED 349
WLY + RGID E V R + KSIGC K FPGKT LAT++ V +W+ +LA E+ ERL
Sbjct: 303 GQWLYDLCRGIDFEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLALELEERLTK 362
Query: 350 DLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAP-PIS 408
D +N R A++LTV Q D +++S SR AL Y+ I + +I N+A +
Sbjct: 363 DREVNGRVAKMLTVGVRQLGDKRMSSFSRCCALVRYEATKISSDTFAIIKSLNTAGNHQA 422
Query: 409 DLTPPLLFLGLSASKFSPLGSHPSIQQFF 437
TPPL L LSASKFS + S I F
Sbjct: 423 AWTPPLSMLYLSASKFSDVSSAGGIAGFL 451
>gi|5729982|ref|NP_006493.1| DNA polymerase eta [Homo sapiens]
gi|59798441|sp|Q9Y253.1|POLH_HUMAN RecName: Full=DNA polymerase eta; AltName: Full=RAD30 homolog A;
AltName: Full=Xeroderma pigmentosum variant type protein
gi|5457144|gb|AAD43810.1|AF158185_1 xeroderma pigmentosum variant RAD30 [Homo sapiens]
gi|5138988|dbj|BAA81666.1| DNA polymerase eta [Homo sapiens]
gi|11463971|dbj|BAB18601.1| DNA polymerase eta [Homo sapiens]
gi|34732732|gb|AAQ81300.1| polymerase (DNA directed), eta [Homo sapiens]
gi|119624615|gb|EAX04210.1| polymerase (DNA directed), eta, isoform CRA_b [Homo sapiens]
gi|119624616|gb|EAX04211.1| polymerase (DNA directed), eta, isoform CRA_b [Homo sapiens]
Length = 713
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/438 (47%), Positives = 281/438 (64%), Gaps = 18/438 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 360 DRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPL 419
Query: 415 LFLGLSASKFSPLGSHPS 432
L L A+KFS S PS
Sbjct: 420 TMLFLCATKFS--ASAPS 435
Score = 46.2 bits (108), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKS 1005
+A ++ C+KC + + ++ EH DYHFALEL + P+S SN S + ++
Sbjct: 627 LAAEDQVPCEKCGSLVPVWDMPEHMDYHFALELQKSFLQPHS----SNPQVVSAVSHQ-- 680
Query: 1006 SKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
KR S L + ++T++ FFKP
Sbjct: 681 GKRNPKSPLACTNKRPRPEGMQTLESFFKP 710
>gi|193785802|dbj|BAG51237.1| unnamed protein product [Homo sapiens]
Length = 701
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/465 (46%), Positives = 292/465 (62%), Gaps = 31/465 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 360 DRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPL 419
Query: 415 LFLGLSASKFSPLGSHPS----IQQFFKPQDHPEPMTSEHSSLPE 455
L L A+KFS S PS I F ++S+ SSLP+
Sbjct: 420 TMLFLCATKFS--ASAPSSSTDITSF---------LSSDPSSLPK 453
Score = 41.2 bits (95), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTTS-EPPNSTSNISNSSSSSKILNKK 1004
+A ++ C+KC + + ++ EH DYHFALEL + +P +S + ++ S N K
Sbjct: 627 LAAEDQVPCEKCGSLVPVWDMPEHMDYHFALELQKSFLQPHSSNPQVVSAVSHQGKRNPK 686
Query: 1005 S-----SKRGRPSKL 1014
S +KR RP +
Sbjct: 687 SPLACTNKRPRPEGM 701
>gi|195348695|ref|XP_002040883.1| GM22104 [Drosophila sechellia]
gi|194122393|gb|EDW44436.1| GM22104 [Drosophila sechellia]
Length = 889
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/452 (46%), Positives = 284/452 (62%), Gaps = 17/452 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+CQVE K +P +PLAVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CPEI LC+VP++R KAD SKYR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 135
Query: 124 HERMKSI--GHIA--ASQLSNTFVVGF---GPDNNDEDARKAGVM---EWLGQVYSDTDT 173
+ RM+ + G A +L NTF VG+ G N R A E Y D
Sbjct: 136 NHRMQQMQSGAFALQPQELVNTFAVGYPNIGDYVNKITNRFANPYMDDERYQMSYDQNDL 195
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
+ ++ L I + E+RAAV +T + CSAGIAHNK+LAKL G++KP KQ+IL
Sbjct: 196 PAVRQSDI--RLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTIL 253
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
P + + L+ +L + K++ LGGK G+ V ETL M ++ KFS +LQ F+EK +WL
Sbjct: 254 PLAETASLFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVELQRKFDEKNGTWL 313
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
+ I+RGID E V R SKSIGCCK+FPG+ + + + HW+ EL+ E+ +RLE D
Sbjct: 314 FNISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIE 373
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVI---NKTNSAPPI-SD 409
N RRA+ + V + Q+ DG+ + SRS AL Y + IV S+ +I KT P S
Sbjct: 374 NNRRAKHMVVQYVQDIDGEEVASSRSTALKDYDQESIVRFSLDLIRANTKTFLRPGSESA 433
Query: 410 LTPPLLFLGLSASKFSPLGSHPS-IQQFFKPQ 440
L + FLG+S KF + S + +Q+ F Q
Sbjct: 434 LNNAIKFLGISVGKFEAVSSAQNRLQEMFANQ 465
>gi|403261352|ref|XP_003923087.1| PREDICTED: DNA polymerase eta isoform 1 [Saimiri boliviensis
boliviensis]
Length = 710
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/438 (47%), Positives = 281/438 (64%), Gaps = 18/438 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDE-----DARKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + +D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETIQKEGMRKQGLFQWLDSLQTDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT L TR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 360 DRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKNYNTSGIQTEWSPPL 419
Query: 415 LFLGLSASKFSPLGSHPS 432
L L A+KFS S PS
Sbjct: 420 TMLFLCATKFS--ASAPS 435
Score = 48.1 bits (113), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 18/96 (18%)
Query: 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTTS-EPPNSTSNISNSSSSSKILNKK 1004
+A ++ C+KC + + E+ EH DYHFALEL + +P +S + ++ S N K
Sbjct: 624 LAAEDQVSCEKCGSLVPVWEMPEHMDYHFALELQKSFLQPHSSNPQVVSAVSPQGKRNPK 683
Query: 1005 S-----SKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
S +KR RP + ++T++ FFKP
Sbjct: 684 SPLACNNKRPRP------------EGMQTLESFFKP 707
>gi|383419309|gb|AFH32868.1| DNA polymerase eta [Macaca mulatta]
Length = 712
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/439 (47%), Positives = 283/439 (64%), Gaps = 18/439 (4%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M
Sbjct: 6 ARVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWA 65
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
D+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT
Sbjct: 66 DDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSS 124
Query: 123 VHERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSDTDT 173
V ER++ + I+A L +T++ G GP +E RK G+ +WL + D T
Sbjct: 125 VQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLT 184
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
S D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 185 S-----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
SV L++ + I+K+R+LGGKLG V+E L M EL +F+ QLQSHF EK SWL
Sbjct: 239 SHGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
Y + RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPP 413
N R A L VS + D +++S R AL Y + + VI N++ ++ +PP
Sbjct: 359 NDRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNASGIQTEWSPP 418
Query: 414 LLFLGLSASKFSPLGSHPS 432
L L L A+KFS S PS
Sbjct: 419 LTMLFLCATKFS--ASAPS 435
Score = 47.0 bits (110), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 925 MDTVDIINTIADSSTVDSAINI---ADPT--------KIICDKCSQPIDINELQEHQDYH 973
MD ++ SS SA+ + A PT ++ C+KC + + ++ EH DYH
Sbjct: 594 MDLAHNSQSMHASSASKSALEVTQKATPTPSILAAEDQVPCEKCGSLVPVWDMPEHMDYH 653
Query: 974 FALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFF 1033
FALEL + P+S SN S + ++ KR S L + ++T++ FF
Sbjct: 654 FALELQKSFLQPHS----SNPQVVSTVSHQ--GKRNPKSPLACTNKRPRPEGMQTLESFF 707
Query: 1034 KP 1035
KP
Sbjct: 708 KP 709
>gi|348576228|ref|XP_003473889.1| PREDICTED: DNA polymerase eta-like [Cavia porcellus]
Length = 712
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/432 (48%), Positives = 279/432 (64%), Gaps = 17/432 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ V+S F+ ++ERASIDEAYIDLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGVMSHFA-VIERASIDEAYIDLTSAV 125
Query: 124 HERMKSI-GH-IAASQLSNTFVVGF--GP------DNNDEDARKAGVMEWLGQVYSDTDT 173
ER++ + G I+A L T+V G GP E+ RK G+ EWL + D
Sbjct: 126 QERLQKLQGQPISADLLPTTYVEGLPQGPRPAAEETGQKEEMRKRGLYEWLDSLQIDNLA 185
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
S D Q L + +IVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 S-----PDLQ-LTVGALIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLV 239
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQ+HF EK SWL
Sbjct: 240 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGELTQFTESQLQNHFGEKNGSWL 299
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
Y + RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D
Sbjct: 300 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDQKD 359
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPP 413
N R A L VS + D +++S R AL Y + + + VI N++ ++ +PP
Sbjct: 360 NDRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSQDAFAVIRNCNTSGIQTEWSPP 419
Query: 414 LLFLGLSASKFS 425
L L L A+KFS
Sbjct: 420 LTMLFLCATKFS 431
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 20/120 (16%)
Query: 922 VSPMDTVDIINTIADSSTVDSAINIADPTKIICDKCSQPIDINELQEHQDYHFALELSTT 981
V ++ + +++ S + D +++CDKCS + + E+ EH DYHFA+EL +
Sbjct: 604 VPAFSALESLKVAPEAAATSSLLTAED--QLLCDKCSTLVPVWEMPEHMDYHFAMELQKS 661
Query: 982 S-EPPNSTSNISNSSSSSKILNKK-----SSKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
+PP+STS + +S N K SSKR RP + ++T++ FFKP
Sbjct: 662 FLQPPSSTSRAVPAVTSQGKRNPKSPLASSSKRTRP------------EGMQTLESFFKP 709
>gi|351707957|gb|EHB10876.1| DNA polymerase eta [Heterocephalus glaber]
Length = 711
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/435 (47%), Positives = 281/435 (64%), Gaps = 18/435 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ V+S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGVMSHFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGFGPDN--------NDEDARKAGVMEWLGQVYSDTDT 173
ER++ + I+A L T+V G P + E+ RK G+ +WL + D
Sbjct: 126 QERLQKLQGQPISADLLPTTYVEGL-PQSPTPAKETVQKEEMRKQGLHQWLDSLQIDNTI 184
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
S D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 185 S-----PDLQ-LTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
Q SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQ+HF EK SWL
Sbjct: 239 SQGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGVEYMGELTQFTESQLQNHFGEKNGSWL 298
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
Y + RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D +
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDQSD 358
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPP 413
N R A L VS + D +++S R AL Y + + + VI N++ ++ +PP
Sbjct: 359 NDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAYKMSQDAFAVIRNCNTSGIQTEWSPP 418
Query: 414 LLFLGLSASKFSPLG 428
L L L A+KFS G
Sbjct: 419 LTMLFLCATKFSVSG 433
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 18/102 (17%)
Query: 940 VDSAINIADPTKIICDKCSQPIDINELQEHQDYHFALELSTTS-EPPNSTSNISNSSSSS 998
V ++ +A ++ CDKC + + E+ EH DYHFALEL + +P +ST ++S
Sbjct: 619 VATSCLLAAEDQLPCDKCGSLVPVWEMPEHMDYHFALELQKSFLQPQSSTPQAVPAASPQ 678
Query: 999 KILNKK-----SSKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
K + K S+KR RP + ++T++ FFKP
Sbjct: 679 KKRDPKSPLACSNKRPRP------------EGMQTLESFFKP 708
>gi|380813878|gb|AFE78813.1| DNA polymerase eta [Macaca mulatta]
Length = 712
Score = 401 bits (1031), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/438 (47%), Positives = 282/438 (64%), Gaps = 18/438 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSSV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R+LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 360 DRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPL 419
Query: 415 LFLGLSASKFSPLGSHPS 432
L L A+KFS S PS
Sbjct: 420 TMLFLCATKFS--ASAPS 435
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 925 MDTVDIINTIADSSTVDSAINI---ADPT--------KIICDKCSQPIDINELQEHQDYH 973
MD ++ SS SA+ + A PT ++ C+KC + + ++ EH DYH
Sbjct: 594 MDLAHNSQSMHASSASKSALEVTQKATPTPSILAAEDQVPCEKCGSLVPVWDMPEHMDYH 653
Query: 974 FALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFF 1033
FALEL + P+S SN S + ++ KR S L + ++T++ FF
Sbjct: 654 FALELQKSFLQPHS----SNPQVVSTVSHQ--GKRNPKSPLACTNKRPRPEGMQTLESFF 707
Query: 1034 KP 1035
KP
Sbjct: 708 KP 709
>gi|321458271|gb|EFX69342.1| hypothetical protein DAPPUDRAFT_228708 [Daphnia pulex]
Length = 695
Score = 401 bits (1031), Expect = e-108, Method: Compositional matrix adjust.
Identities = 214/464 (46%), Positives = 295/464 (63%), Gaps = 17/464 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ALIDMDCFY QVE + NP GKP VVQY WKGGGII+VNYEAR +GVT+ MRGD
Sbjct: 8 RVVALIDMDCFYVQVEERENPGNKGKPACVVQYKKWKGGGIISVNYEARAQGVTKQMRGD 67
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA++ CP+ L RVP RGKAD+++YR+ G+EVI V+ F +VERASIDEAYID+T V+
Sbjct: 68 EAREKCPDCILYRVPEQRGKADLTRYRDGGKEVIDVMCSFGVVVERASIDEAYIDMTVVI 127
Query: 124 HERMK--SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+ + + I +L NT+ VG+G D +D GV WL Q S+ + N D
Sbjct: 128 DKMLSDSTATAIDLEELPNTYFVGWGNDTDD----VKGVHGWL-QALSEGNY----NDND 178
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
++ L ++VE++RAAV KT F CSAGI++NK+LAKL CG++KP KQ++LP SV
Sbjct: 179 WK-LTYGAILVEKMRAAVYEKTGFRCSAGISNNKMLAKLACGINKPNKQTVLPFRSVEEF 237
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
+ +KKVR+LGGKLG + E C+TM ++ K + LQ F+ KTA+WL++ ARG+D
Sbjct: 238 FTTFPLKKVRNLGGKLGLVLREEFHCTTMADIVKIPERVLQERFDSKTATWLFWYARGVD 297
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLL 361
HE V++R + KSIGC K F G L +R+ +SHW++EL EV ERLE D N R A+LL
Sbjct: 298 HESVSSRRLPKSIGCNKNFTGLAALDSREKISHWLEELCAEVSERLEKDRETNNRTAKLL 357
Query: 362 TVSFTQETDGKVNSCSRSIAL-ASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLF--LG 418
T++ E D + S +RSI L +SY+ + + VI+K N + P++ LG
Sbjct: 358 TLTVRLEGDIRPYSYTRSIPLTSSYEKMHMANACLAVISKENPCFKQGNTRVPVVVTCLG 417
Query: 419 LSASKF-SPLGSHPSIQQFFKPQDHPEPMTSEHSSLPEQSTNHD 461
+SASKF L ++ I +FF ++ E E EQ H+
Sbjct: 418 VSASKFVDQLENNSRIDRFFVTKNSAE-TNKEKEPYAEQEALHE 460
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 952 IICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRP 1011
++CDKC Q E++EH+D+H A EL STS+++N +S + KKSSK RP
Sbjct: 614 VVCDKCKQQFLREEIEEHKDFHLASELQKEFSAQPSTSSLAN-NSKVQTAEKKSSK--RP 670
Query: 1012 SKLNSFKNSENFKKLKTIDQFFKPKS 1037
K N K +++ K+ +TID FF +S
Sbjct: 671 LK-NQKKAAKDTKRSRTIDSFFGSQS 695
>gi|10440504|dbj|BAB15799.1| dpol-eta [Drosophila melanogaster]
gi|12083719|dbj|BAB20905.1| DNA polymerase eta [Drosophila melanogaster]
gi|16198323|gb|AAL14000.1| SD05329p [Drosophila melanogaster]
Length = 885
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/453 (46%), Positives = 284/453 (62%), Gaps = 19/453 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+CQVE K +P +PLAVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CPEI LC+VP++R KAD SKYR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 135
Query: 124 HERMKSI--GHIA--ASQLSNTFVVGF---GPDNNDEDARKAGVM---EWLGQVYSDTDT 173
+ RM+ + G A +L NTF VG+ G N R A E Y D
Sbjct: 136 NHRMQQMQSGAFALQPQELVNTFAVGYPSIGDYVNKITNRFANPYMDDERYQMSYDQNDL 195
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
+ ++ L I + E+RAAV +T + CSAGIAHNK+LAKL G++KP KQ+IL
Sbjct: 196 PAVRQSDI--RLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTIL 253
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
P + + L+ +L + K++ LGGK G+ V ETL M ++ KFS LQ F+EK +WL
Sbjct: 254 PLTETASLFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDEKNGTWL 313
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
+ I+RGID E V R SKSIGCCK+FPG+ + + + HW+ EL+ E+ +RLE D
Sbjct: 314 FNISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIE 373
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPI-----S 408
N RRA+ + V + Q+ DG+ + SRS AL Y + IV +S+ +I K N+ + S
Sbjct: 374 NNRRAKHMVVQYVQDIDGEEVASSRSTALRDYDQESIVRLSLDLI-KANTKTFLRPGSES 432
Query: 409 DLTPPLLFLGLSASKFSPLGS-HPSIQQFFKPQ 440
L + FLG+S KF + S +Q+ F Q
Sbjct: 433 ALNNAIKFLGISVGKFETVSSGQNKLQEMFANQ 465
>gi|24668444|ref|NP_649371.2| DNApol-eta [Drosophila melanogaster]
gi|7296509|gb|AAF51794.1| DNApol-eta [Drosophila melanogaster]
Length = 885
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/453 (46%), Positives = 284/453 (62%), Gaps = 19/453 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+CQVE K +P +PLAVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CPEI LC+VP++R KAD SKYR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 135
Query: 124 HERMKSI--GHIA--ASQLSNTFVVGF---GPDNNDEDARKAGVM---EWLGQVYSDTDT 173
+ RM+ + G A +L NTF VG+ G N R A E Y D
Sbjct: 136 NHRMQQMQSGAFALQPQELVNTFAVGYPSIGDYVNKITNRFANPYMDDERYQMSYDQNDL 195
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
+ ++ L I + E+RAAV +T + CSAGIAHNK+LAKL G++KP KQ+IL
Sbjct: 196 PAVRQSDI--RLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTIL 253
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
P + + L+ +L + K++ LGGK G+ V ETL M ++ KFS LQ F+EK +WL
Sbjct: 254 PLTETASLFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDEKNGTWL 313
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
+ I+RGID E V R SKSIGCCK+FPG+ + + + HW+ EL+ E+ +RLE D
Sbjct: 314 FNISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIE 373
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPI-----S 408
N RRA+ + V + Q+ DG+ + SRS AL Y + IV +S+ +I K N+ + S
Sbjct: 374 NNRRAKHMVVQYVQDIDGEEVASSRSTALRDYDQESIVRLSLDLI-KANTKTFLRPGSES 432
Query: 409 DLTPPLLFLGLSASKFSPLGS-HPSIQQFFKPQ 440
L + FLG+S KF + S +Q+ F Q
Sbjct: 433 ALNNAIKFLGISVGKFETVSSGQNKLQEMFANQ 465
>gi|195496653|ref|XP_002095784.1| GE19515 [Drosophila yakuba]
gi|194181885|gb|EDW95496.1| GE19515 [Drosophila yakuba]
Length = 895
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/453 (45%), Positives = 283/453 (62%), Gaps = 19/453 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+CQVE K +P +PLAVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CPEI LC+VP++R KAD SKYR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTKLLERASVDEAYLDITETV 135
Query: 124 HERMKSI--GHIA--ASQLSNTFVVGF---GPDNNDEDARKAGVM---EWLGQVYSDTDT 173
+ RM+ + G A +L NTF VG+ G N R A E Y D
Sbjct: 136 NHRMQQMQSGAFALQPQELVNTFAVGYPNIGDFVNKITNRFANPYMDDERFQMSYDQNDL 195
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
+ ++ L I + E+RAAV +T + CSAGIAHNK+LAKL G++KP KQ+IL
Sbjct: 196 PAVRQSDI--RLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTIL 253
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
P + + + +L + K++ LGGK G+ V ETL M ++ KF+ +LQ F+EK +WL
Sbjct: 254 PLAETASFFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFTEVELQRKFDEKNGTWL 313
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
+ I+RGID E V R SKSIGCC++FPG+ + + + HW+ EL+ E+ +RLE D
Sbjct: 314 FNISRGIDMEAVTPRFYSKSIGCCQKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIE 373
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPI-----S 408
N RRA+ + V + Q+ DG+ + SRS AL Y + IV S+ +I K N+ + S
Sbjct: 374 NNRRAKQMVVQYVQDIDGEEVASSRSTALKDYDQESIVRFSLDLI-KANTKTFLRPGSES 432
Query: 409 DLTPPLLFLGLSASKFSPLGS-HPSIQQFFKPQ 440
L + FLG+S KF + S +Q+ F Q
Sbjct: 433 ALNNAIKFLGISVGKFETVSSAQNKLQEMFANQ 465
>gi|195592306|ref|XP_002085876.1| GD12080 [Drosophila simulans]
gi|194197885|gb|EDX11461.1| GD12080 [Drosophila simulans]
Length = 889
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/452 (46%), Positives = 284/452 (62%), Gaps = 17/452 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+CQVE K +P +PLAVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CPEI LC+VP++R KAD SKYR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 135
Query: 124 HERMKSI--GHIA--ASQLSNTFVVGF---GPDNNDEDARKAGVM---EWLGQVYSDTDT 173
+ RM+ + G A +L NTF VG+ G N R A E Y D
Sbjct: 136 NHRMQQMQSGAFALQPQELVNTFAVGYPNIGDYVNKITNRFANPYMDDERYQMSYDQNDL 195
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
+ ++ L I + E+RAAV +T + CSAGIAHNK+LAKL G++KP KQ+IL
Sbjct: 196 PAVRQSDI--RLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTIL 253
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
P + + L+ +L + K++ LGGK G+ V +TL M ++ KFS +LQ F+EK +WL
Sbjct: 254 PLAETASLFDSLPVGKIKGLGGKFGEVVCDTLGIKFMGQVVKFSEVELQRKFDEKNGTWL 313
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
+ I+RGID E V R SKSIGCCK+FPG+ + + + HW+ EL+ E+ +RLE D
Sbjct: 314 FNISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIE 373
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVI---NKTNSAPPI-SD 409
N RRA+ + V + Q+ DG+ + SRS AL Y + IV S+ +I KT P S
Sbjct: 374 NNRRAKHMVVQYVQDIDGEEVASSRSTALKDYDQESIVRFSLDLIRANTKTFLRPGSESA 433
Query: 410 LTPPLLFLGLSASKFSPLGSHPS-IQQFFKPQ 440
L + FLG+S KF + S + +Q+ F Q
Sbjct: 434 LNNAIKFLGISVGKFEAVSSAQNRLQEMFANQ 465
>gi|410959244|ref|XP_003986222.1| PREDICTED: DNA polymerase eta [Felis catus]
Length = 712
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 218/480 (45%), Positives = 298/480 (62%), Gaps = 32/480 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGII+V+YEAR GV R M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLKNKPCAVVQYKSWKGGGIISVSYEARAFGVARSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ V+S F+ I ER SIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGVMSRFAGI-ERGSIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNND-----EDARKAGVMEWLGQVYSDTDTS 174
HER++ + I+A L T++ G GP + E+ RK G+ +WL + + TS
Sbjct: 126 HERLQKLQGQPISADLLPTTYIEGLPQGPTTAEGTDQKEEMRKQGLFQWLDSLQTGNTTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I K+R+LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIYKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVRPRKIPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ + +PPL
Sbjct: 360 DRVATQLAVSIRVQGDRRLSSLRRCCALTHYDAHKMSRDAFAVIRNCNTSGIQTCWSPPL 419
Query: 415 LFLGLSASKFSPLGSHPS----IQQFFKPQDHPEPMTSEHSSLPE-QSTNHDSKKRDKTL 469
L L A+KFS S PS I F ++S+ SSLP+ +T+ ++K ++ L
Sbjct: 420 TMLFLCATKFS--ASAPSSCTDITTF---------LSSDPSSLPKVPATSSEAKTQECGL 468
Score = 48.5 bits (114), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 20/105 (19%)
Query: 937 SSTVDSAINIADPTKIICDKCSQPIDINELQEHQDYHFALELSTT-SEPPNSTSNISNSS 995
S+T S + D ++ C+KC + + E+ EH DYHFALEL + + +S S + +S
Sbjct: 619 STTTPSPVAAED--QVPCEKCGSLVPVWEMPEHTDYHFALELQKSFMQSHSSNSQVVPAS 676
Query: 996 SSSKILNKK-----SSKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
S N K S+KR RP + ++T++ FFKP
Sbjct: 677 SPQGKRNPKSPSASSNKRPRP------------EGMQTLESFFKP 709
>gi|194752317|ref|XP_001958469.1| GF23499 [Drosophila ananassae]
gi|190625751|gb|EDV41275.1| GF23499 [Drosophila ananassae]
Length = 876
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/463 (44%), Positives = 288/463 (62%), Gaps = 39/463 (8%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+CQVE K NP KPLAVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQNPEHRNKPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA+ CPEI LC+VP++R KAD SKYR+AG+EV VL F+ ++ERAS+DEAY+D+TD V
Sbjct: 76 EARDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITDTV 135
Query: 124 HERMKSI--GHIA--ASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ R+K + G A +L NT+ VG+ PD D ++ ++ + +E+
Sbjct: 136 NLRIKQMESGAFALKPQELVNTYAVGY-PDIGD----------YVNKITNRFSNPYIED- 183
Query: 180 EDFQ----------------ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCG 223
E FQ L I + E+RAAV +T + CSAGIAHNK+LAKL G
Sbjct: 184 ERFQLSYDQNDLPAVRQSDIRLLIGAAVAGEVRAAVKKETGYECSAGIAHNKILAKLAAG 243
Query: 224 LHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS 283
L+KP KQ+ILP + + +L + K++ LGGK G+ V ET+ + +L KFS +LQ
Sbjct: 244 LNKPNKQTILPLGEIPAFFDSLPVGKIKGLGGKFGEVVCETMGIKFLGQLCKFSEAELQR 303
Query: 284 HFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEV 343
++EK +WL+ IARGID E V R SKSIGCCK+FPG+ + + + HW+ EL+ E+
Sbjct: 304 KYDEKNGTWLFNIARGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELSSEI 363
Query: 344 CERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNS 403
ERLE D N R+A+ + V + Q+ DG + SRS AL Y + + + ++++I ++N+
Sbjct: 364 NERLEKDFIENNRKAKQMVVQYIQDIDGHEVASSRSTALKDYDKESLAKFALELI-RSNT 422
Query: 404 -----APPISDLTPPLLFLGLSASKFSPLG-SHPSIQQFFKPQ 440
A + L + FLG+SA KF + + +Q+ F Q
Sbjct: 423 KTFLRAGCDAALNNAIKFLGISAGKFETVSNAQNKLQEMFANQ 465
>gi|395534246|ref|XP_003769157.1| PREDICTED: DNA polymerase eta [Sarcophilus harrisii]
Length = 704
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/433 (47%), Positives = 283/433 (65%), Gaps = 18/433 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRENPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKAD++KYR A EV+ V+S F+ ++ER+SIDEAY+DLT+ V
Sbjct: 67 DAKKLCPDLLLAQVRETRGKADLTKYREASVEVMKVMSRFA-VIERSSIDEAYVDLTNAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--------GPDNNDEDARKAGVMEWLGQVYSDTDT 173
ER++ + + A+ L++T++ GF G DE RK GV++WL + D
Sbjct: 126 QERLQKLQAQPVTANSLASTYIQGFPHGTRALEGSIQKDE-IRKQGVIQWLESLPFDDSG 184
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
S D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 185 S-----PDLQ-LTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
SV L+++L I K+R+LGGKLG V++TL M EL +F+ QLQ+HF EK SWL
Sbjct: 239 SHGSVPQLFSHLPISKIRNLGGKLGASVIDTLGVEYMGELTQFTELQLQNHFGEKNGSWL 298
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
Y + RGI+H+PV R + K+IGC K FPGK LAT++ V W+ +LA E+ ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKIALATQEQVKWWLLQLAQELEERLIKDRND 358
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPP 413
N R A LTVS + D +++S R AL Y + + +I N+A ++ +PP
Sbjct: 359 NDRVATQLTVSIRVQGDRRLSSLRRCCALVCYDAHRMSNDAFALIRNCNTAGIKAEWSPP 418
Query: 414 LLFLGLSASKFSP 426
L L L A+KFSP
Sbjct: 419 LTMLFLCATKFSP 431
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 951 KIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGR 1010
++ C+KC I + E+ EH DYHFA+EL + P S S + ++S S+I K+S K
Sbjct: 623 QMCCEKCGSLILVWEMPEHMDYHFAMELQNSFLGPCSGSPVVLATSPSQI--KRSPKSSL 680
Query: 1011 PSKLNSFKNSENFKKLKTIDQFFKPKSQ 1038
PS + + +T++ FFKP +Q
Sbjct: 681 PSNAKRLRP----EGTRTLESFFKPLTQ 704
>gi|194876038|ref|XP_001973703.1| GG13193 [Drosophila erecta]
gi|190655486|gb|EDV52729.1| GG13193 [Drosophila erecta]
Length = 890
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/452 (45%), Positives = 282/452 (62%), Gaps = 17/452 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+CQVE K P +PLAVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQRPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CPEI LC+VP++R KAD SKYR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V
Sbjct: 76 EAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 135
Query: 124 HERMKS--IGHIA--ASQLSNTFVVGF---GPDNNDEDARKAGVM---EWLGQVYSDTDT 173
+ RM+ IG A +L NTF VG+ G N R A E Y D
Sbjct: 136 NHRMQQMQIGAFALQPQELVNTFAVGYPNIGDYVNKITNRFANPYMDDERFQMSYDQNDL 195
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
+ ++ L I + E+RAAV +T + CSAGIAHNK+LAKL G++KP KQ+IL
Sbjct: 196 PAVRQSDI--RLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTIL 253
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
P + + L+ +L + K++ LGGK G+ V ETL + ++ KF+ +LQ F+EK +WL
Sbjct: 254 PLADTASLFDSLPVGKIKGLGGKFGEVVCETLGIKYIGQVVKFTEVELQRKFDEKNGTWL 313
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
+ I+RGID E V R SKSIGCCK+FPG+ + + + HW+ EL+ E+ +RLE D
Sbjct: 314 FNISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIE 373
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVI--NKTNSAPPISD-- 409
N RRA+ + V + Q+ DG+ + SRS AL Y + IV ++ +I N P S+
Sbjct: 374 NNRRAKQMVVQYVQDIDGEEVASSRSTALKDYDQESIVRFALDLIRANTKTFLRPGSEAA 433
Query: 410 LTPPLLFLGLSASKFSPLGS-HPSIQQFFKPQ 440
L + FLG+S KF + S +Q+ F Q
Sbjct: 434 LNNAIKFLGISVGKFETVSSAQNKLQEMFANQ 465
>gi|296198265|ref|XP_002746624.1| PREDICTED: DNA polymerase eta [Callithrix jacchus]
Length = 709
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/438 (47%), Positives = 278/438 (63%), Gaps = 18/438 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRKKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDE-----DARKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADWLPSTYIEGLPQGPTTAEETIQKEGMRKQGLFQWLDSLQIDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q++L
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLLS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I K+R LGGKLG V E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIHKIRSLGGKLGASVTEILGIEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT L TR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 360 DRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKNYNTSGIQTEWSPPL 419
Query: 415 LFLGLSASKFSPLGSHPS 432
L L A+KFS S PS
Sbjct: 420 TMLFLCATKFS--ASAPS 435
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 17/95 (17%)
Query: 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKK- 1004
+A ++ C+KC + + E+ EH DYHFALEL + P+S++ S+S N K
Sbjct: 624 LAAEDQVPCEKCGSMVPVWEMPEHMDYHFALELQKSFLQPHSSNPQMVSASPQGKRNPKS 683
Query: 1005 ----SSKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
S+KR RP + ++T++ FFKP
Sbjct: 684 PLACSNKRPRP------------EGMQTLESFFKP 706
>gi|198465285|ref|XP_001353578.2| GA20133 [Drosophila pseudoobscura pseudoobscura]
gi|198150090|gb|EAL31091.2| GA20133 [Drosophila pseudoobscura pseudoobscura]
Length = 894
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/466 (44%), Positives = 287/466 (61%), Gaps = 45/466 (9%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+CQVE K P +PLAVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQQPEYRNRPLAVVQYNKWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CP+I LC+VP++R KAD SKYR+AG+EV VL F+ ++ERAS+DEAY+D+TD V
Sbjct: 76 EAKDLCPDIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITDTV 135
Query: 124 HERMKS--IGHIA--ASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ RMK IG A +L NTF VG+ A + +++ ++ T+L N
Sbjct: 136 NLRMKQLQIGAFALKPQELVNTFAVGY-----------ANIGDYVNKI-----TNLFANP 179
Query: 180 ----EDFQ----------------ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
E FQ L I I E+RAAV T + CSAGIAHNK+LAK
Sbjct: 180 YINDERFQLSYDQNDLPAVRQSDIRLLIGASIAGEVRAAVKKDTGYDCSAGIAHNKILAK 239
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLK 279
L GL+KP KQ+ILP + + L+ +L + K++ LGGK G+ V ETL + +L K++
Sbjct: 240 LAAGLNKPNKQTILPLAEIPGLFDSLPVGKIKGLGGKFGEVVCETLGIKFLGQLVKYTEG 299
Query: 280 QLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQEL 339
+LQ F+EK +WL+Y++RGID E V R SKSIGCCK+FPG+ + + + HW+ EL
Sbjct: 300 ELQRKFDEKNGTWLFYMSRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGEL 359
Query: 340 ADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVI- 398
+ E+ +RLE D N R+A+ + V + Q+ DG+ + SRS ++ Y + + ++++ +I
Sbjct: 360 SIEINDRLEKDFIENNRKAKQMVVQYVQDIDGEEVTSSRSTSINHYDQETLAKLALDLIK 419
Query: 399 -NKTNSAPPISD--LTPPLLFLGLSASKFSPLG-SHPSIQQFFKPQ 440
N P SD L + FLG+S KF + + S+Q F Q
Sbjct: 420 SNTKTFLRPGSDAALNNSVKFLGISVGKFETISTAQNSLQNMFANQ 465
>gi|195161139|ref|XP_002021427.1| GL25322 [Drosophila persimilis]
gi|194118540|gb|EDW40583.1| GL25322 [Drosophila persimilis]
Length = 892
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/462 (44%), Positives = 287/462 (62%), Gaps = 37/462 (8%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+CQVE K P +PLAVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 16 RVVLLVDMDCFFCQVEEKQQPEYRNRPLAVVQYNKWRGGGIIAVNYAARAKGVTRHMRGD 75
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CP+I LC+VP++R KAD SKYR+AG+EV VL F+ ++ERAS+DEAY+D+TD V
Sbjct: 76 EAKDLCPDIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITDTV 135
Query: 124 HERMKS--IGHIA--ASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ RMK IG A +L NTF VG+ A + +++ ++ ++ + N
Sbjct: 136 NLRMKQLQIGAFALKPQELVNTFAVGY-----------ANIGDYVNKI-TNLFANPYIND 183
Query: 180 EDFQ----------------ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCG 223
E FQ L I I E+RAAV T + CSAGIAHNK+LAKL G
Sbjct: 184 ERFQLSYDQNDLPAVRQSDIRLLIGASIAGEVRAAVKKDTGYDCSAGIAHNKILAKLAAG 243
Query: 224 LHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS 283
L+KP KQ+ILP + + L+ +L + K++ LGGK G+ V ETL + +L K++ +LQ
Sbjct: 244 LNKPNKQTILPLAEIPGLFDSLPVGKIKGLGGKFGEVVCETLGIKFLGQLVKYTEGELQR 303
Query: 284 HFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEV 343
F+EK +WL+Y++RGID E V R SKSIGCCK+FPG+ + + + HW+ EL+ E+
Sbjct: 304 KFDEKNGTWLFYMSRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELSIEI 363
Query: 344 CERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVI--NKT 401
+RLE D N R+A+ + V + Q+ DG+ + SRS ++ Y + + ++++ +I N
Sbjct: 364 NDRLEKDFIENNRKAKQMVVQYVQDIDGEEVTSSRSTSINHYDQETLAKLALDLIKSNTK 423
Query: 402 NSAPPISD--LTPPLLFLGLSASKFSPLG-SHPSIQQFFKPQ 440
P SD L + FLG+S KF + + S+Q F Q
Sbjct: 424 TFLRPGSDAALNNSVKFLGISVGKFETISNAQNSLQNMFANQ 465
>gi|328700741|ref|XP_001945230.2| PREDICTED: DNA polymerase eta-like [Acyrthosiphon pisum]
Length = 744
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/440 (45%), Positives = 285/440 (64%), Gaps = 20/440 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IAL+DMDCFYCQVE + N SL GKP+AVVQYN+W+GGGIIAVNYEAR KGV RHMRGD
Sbjct: 8 RVIALVDMDCFYCQVEVQHNQSLTGKPVAVVQYNSWRGGGIIAVNYEARDKGVNRHMRGD 67
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A Q CP++ L RV + GKAD+SKYR A ++V VLS+FS+ V+RASIDEAY+DLT VV
Sbjct: 68 DALQACPDLNLVRVKELHGKADLSKYRTASQKVFEVLSQFSSCVQRASIDEAYVDLTSVV 127
Query: 124 HERMKSIGH--IAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+ + S H I + L NTFV G+ DN+ + + + WL VY++ E +D
Sbjct: 128 NHHISS-NHNVITENDLPNTFVEGYSDDNSKD--KNKNLKSWLHDVYNN------ELQDD 178
Query: 182 F-QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+ L I ++VE++R ++ +T F CSAGIA+NK+L+KL CGLHKP +Q++LP SSV
Sbjct: 179 YLLRLTIGAMMVEKLRQSIFEQTGFRCSAGIANNKILSKLACGLHKPNQQTMLPPSSVPH 238
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
L+ + IKKV++LGGKLG+ + + C M +L L LQ F +KT ++LY I++GI
Sbjct: 239 LFETIPIKKVKNLGGKLGERIRQEFNCEFMSDLAAIPLNDLQQKFNDKTCNFLYQISKGI 298
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D+EPV +RL+ KSIG CK FP T L ++++ W+ L +++ ++L+DD NKR+A L
Sbjct: 299 DNEPVESRLIPKSIGSCKSFP--TGLKVKEEIKQWLNTLMNDIVDKLKDDYEANKRKATL 356
Query: 361 LTVS---FTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFL 417
+TVS ++T + C + KL D S+ + + + + P+ FL
Sbjct: 357 MTVSVRYLDKKTKLPTSQCFEVTTYSHNKLLDTAYSSLCTMTENQKSLQWKN---PISFL 413
Query: 418 GLSASKFSPLGSHPSIQQFF 437
G++ +F + SI +F
Sbjct: 414 GVAIGRFVEMNVKSSIDNYF 433
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 917 NGNADVSPMDTVDIINTIADSSTVDSAINIADPTKIICDKCSQPIDINELQEHQDYHFAL 976
N +VS ++ V I+ + T++ A P ++C++C IDI+ EH D+H A+
Sbjct: 626 NQKTNVSRIELVPIVQSTIIEDTIECA-----PITLLCERCDNMIDIDTYDEHIDHHVAI 680
Query: 977 ELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSKLNSFKNSENFKK-LKTIDQFFKP 1035
EL+ + N ++N +SK + KK ++ G K NS +S N KK +I +FKP
Sbjct: 681 ELNESLNIVNPVQPLNNRILNSKPVKKKKNECGVKRKKNSKASSSNPKKPCTSISSYFKP 740
>gi|299856835|pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
2bp Upstream Of The Active Site (Tt4)
gi|374977693|pdb|3TQ1|A Chain A, Human Dna Polymerase Eta In Binary Complex With Dna
gi|386783428|pdb|4EEY|A Chain A, Crystal Structure Of Human Dna Polymerase Eta In Ternary
Complex With A Cisplatin Dna Adduct
Length = 435
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/431 (47%), Positives = 278/431 (64%), Gaps = 16/431 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 10 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 70 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 128
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDE-----DARKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 129 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS 188
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 189 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 242
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 243 HGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLY 302
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 303 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 362
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 363 DRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNMNTSGIQTEWSPPL 422
Query: 415 LFLGLSASKFS 425
L L A+KFS
Sbjct: 423 TMLFLCATKFS 433
>gi|194223548|ref|XP_001497587.2| PREDICTED: DNA polymerase eta [Equus caballus]
Length = 713
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/432 (47%), Positives = 272/432 (62%), Gaps = 18/432 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I L+DMDCF+ QVE + NP L KP AVVQY WKGGGI+AV+YEAR GVTR M D
Sbjct: 7 RVIVLVDMDCFFVQVEQRQNPHLRNKPCAVVQYTAWKGGGIVAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP++ L VP RGKAD++KYR A EV+ V+S F+ ++ERASIDEA++DLT V
Sbjct: 67 EAKKLCPDLLLVEVPESRGKADLTKYREASVEVMEVMSRFA-MIERASIDEAFVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--------GPDNNDEDARKAGVMEWLGQVYSDTDT 173
ER++ + I+A L +T++ G G D +E RK G+ +WL + +D T
Sbjct: 126 RERLQKLQGQPISADLLPSTYIEGLPQGSTTAEGTDEKEE-MRKQGLFQWLDSLQTDNTT 184
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
S D Q L + VIVEE+RAA+ +T CSAGI+HNKVLAKL CGL+KP Q+++
Sbjct: 185 S-----PDLQ-LTVGAVIVEEMRAAIERQTGLQCSAGISHNKVLAKLACGLNKPNHQTLI 238
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
SV L++ + I K+R+LGGKLG V+ L M EL +F+ QLQSHF EK SWL
Sbjct: 239 SHGSVPQLFSQMPISKIRNLGGKLGASVIGILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
Y + RGI+H+PV R + KSIGCCK FP K L T++ V W+ +LA E+ ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQILKSIGCCKNFPAKVALTTQEQVQWWLLQLAQELEERLIKDRNE 358
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPP 413
N R A L VS + D +++S R AL Y + + VI N + ++ +PP
Sbjct: 359 NDRVATQLAVSLRVQGDRRLSSLRRCCALTCYDAHKMSHDAFAVIRNYNVSGIQNEWSPP 418
Query: 414 LLFLGLSASKFS 425
L L LSA+KFS
Sbjct: 419 LTMLFLSATKFS 430
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 912 SINKGNGNADVSPMDTVDIINTIADSSTVDSAINIA-----DPT------KIICDKCSQP 960
++ G+ A ++ MD + S T SA+ +A P+ ++ C+KC
Sbjct: 581 AVKLGSSRATLTEMDLTQKSPSQLASLTSKSALEVARKATTTPSLLAAEDQLPCEKCGSL 640
Query: 961 IDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSKLNSFKNS 1020
+ + E+ EH DYHFALEL + P S+SN S+SS +KR S S
Sbjct: 641 VPVWEMPEHSDYHFALELQKSFLQPYSSSNPRAVSASS-----PQNKRNPKSPSASSSKR 695
Query: 1021 ENFKKLKTIDQFFKP 1035
+ +KT++ FFKP
Sbjct: 696 PRPEGMKTLESFFKP 710
>gi|299856826|pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And
Incoming Nucleotide (Nrm)
gi|299856829|pdb|3MR3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
3't Of A Cpd In The Active Site (Tt1)
gi|299856832|pdb|3MR5|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
1bp Upstream Of The Active Site (Tt3)
gi|342351155|pdb|3SI8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
5't Of A Cpd In The Active Site (Tt2)
gi|386783389|pdb|4DL2|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Cg
Template (Gg0a)
gi|386783392|pdb|4DL3|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Gg
Template (Gg0b).
gi|386783395|pdb|4DL4|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
3'g Of Cisplatin Crosslinked Gs (Pt-Gg1).
gi|386783398|pdb|4DL5|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
5'g Of Cisplatin Crosslinked Gs (Pt-Gg2).
gi|386783401|pdb|4DL6|A Chain A, Human Dna Polymerase Eta Extending Primer Immediately
After Cisplatin Crosslink (Pt-Gg3).
gi|386783404|pdb|4DL7|A Chain A, Human Dna Polymerase Eta Fails To Extend Primer 2
Nucleotide After Cisplatin Crosslink (Pt-Gg4).
gi|394986303|pdb|4ECQ|A Chain A, Human Dna Polymerase Eta- Dna Ternary Complex: At Crystal
At Ph6.8(K+ Mes) With 1 Ca2+ Ion
gi|394986306|pdb|4ECR|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 40 Sec
gi|394986309|pdb|4ECS|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 80 Sec
gi|394986312|pdb|4ECT|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 140 Sec
gi|394986315|pdb|4ECU|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 200 Sec
gi|394986318|pdb|4ECV|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 230 Sec
gi|394986321|pdb|4ECW|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 250 Sec
gi|394986324|pdb|4ECX|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 300 Sec
gi|394986327|pdb|4ECY|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.0 (Na+ Mes) With 1 Ca2+ Ion
gi|394986330|pdb|4ECZ|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.5 (Na+ Mes) With 1 Ca2+ Ion
gi|394986333|pdb|4ED0|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.8 (Na+ Mes) With 1 Ca2+ Ion
gi|394986336|pdb|4ED1|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.0 (Na+ Mes) With 1 Ca2+ Ion
gi|394986339|pdb|4ED2|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.2 (Na+ Hepes) With 1 Ca2+ Ion
gi|394986342|pdb|4ED3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.5 (Na+ Hepes) With 1 Ca2+ Ion
gi|394986345|pdb|4ED6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 6.7 For 15 Hr, Sideway
Translocation
gi|394986348|pdb|4ED7|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Tg Crystal
At Ph 7.0 (K+ Mes) With 1 Ca2+ Ion
gi|394986351|pdb|4ED8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The Tg Crystal At Ph 7.0, Normal Translocation
Length = 435
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/431 (47%), Positives = 278/431 (64%), Gaps = 16/431 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 10 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 70 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 128
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDE-----DARKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 129 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS 188
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 189 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 242
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 243 HGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLY 302
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 303 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 362
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 363 DRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPL 422
Query: 415 LFLGLSASKFS 425
L L A+KFS
Sbjct: 423 TMLFLCATKFS 433
>gi|440902446|gb|ELR53238.1| DNA polymerase eta [Bos grunniens mutus]
Length = 710
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/450 (45%), Positives = 287/450 (63%), Gaps = 28/450 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGI+AV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYTSWKGGGIVAVSYEARAFGVTRNMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L ++ + GKA+++KYR+A EV+ V+S F+ ++ER SIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQIRELHGKANLTKYRDASMEVMEVMSRFA-VMERGSIDEAYLDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNND-----EDARKAGVMEWLGQVYSDTDTS 174
ER++ + + I+A L T + GF GP + E+ RK G+++WL + +++ +S
Sbjct: 126 QERLQKLQNQPISADLLPTTCIEGFPQGPTTTEGTVEKEERRKQGLLQWLDSLQTESTSS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTMGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L+ + I K+R+LGGKLG V+E L M EL +FS QLQSHF E+ SWLY
Sbjct: 240 HGSVPQLFNQVPISKIRNLGGKLGASVIEILGVEYMGELTQFSEPQLQSHFGERNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R ++K++GC K FPGKT L+TR V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRPITKTLGCSKNFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNAN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + I N++ ++ PPL
Sbjct: 360 DRVATQLVVSMRIQGDRRLSSLRRCCALTHYDAHKMSHDAFATIRNCNTSGTQTEWAPPL 419
Query: 415 LFLGLSASKF-----SP-------LGSHPS 432
+ L L A+KF SP LGS PS
Sbjct: 420 IMLFLCATKFCSSTPSPGPDITTFLGSDPS 449
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 934 IADSSTVDSAINIADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISN 993
+A +T+ S+ +A ++ C+KC + + ++ EH DYHFALEL + P+S++
Sbjct: 613 VAQKATMTSSF-LAAEDQVPCEKCGSLVPVWDMPEHSDYHFALELQNSFLQPHSSNPQVV 671
Query: 994 SSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
+SS + SKR S L S + ++T++ FFKP
Sbjct: 672 PASSPQ------SKRNPKSPLASNNKRPRPEGMQTLESFFKP 707
>gi|432904760|ref|XP_004077403.1| PREDICTED: DNA polymerase eta-like [Oryzias latipes]
Length = 708
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 222/498 (44%), Positives = 302/498 (60%), Gaps = 26/498 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCFY QVE +LNP+L P V QY TWKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRLNPALRNTPCVVAQYKTWKGGGIIAVSYEARAHGVTRNMWVD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++++ RV GKAD++ YR+A EVI V+S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLQVARVRESHGKADLTHYRDASVEVIEVMSRFA-VIERASIDEAYMDLTAAV 125
Query: 124 HERMKSIG--HIAASQLSNTFVVGF---GPDNNDEDA------------RKAGVMEWLGQ 166
+R+K+ ++ L T++ G+ G D DA R G+ +W+
Sbjct: 126 QQRLKTTTEEQMSPCLLKTTYIQGYPQSGLDPPSADASPEEMILYKEELRSKGLQQWMES 185
Query: 167 VYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHK 226
+ + + L N + Q L + +IVEE+RAAV +T F CSAGI+HNKVLAKL CGL+K
Sbjct: 186 LPTPSSGEL--NCAELQ-LTMGALIVEEMRAAVEKQTGFRCSAGISHNKVLAKLACGLNK 242
Query: 227 PQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE 286
P +Q++LP SV+ L+ +L I K+R+LGGK+G ++ETL+ M +L +FS QL HF
Sbjct: 243 PNRQTVLPLESVTELFNSLPIGKIRNLGGKMGASIIETLKVENMGDLTRFSQSQLVQHFG 302
Query: 287 EKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCER 346
EKT WLY + RG++ E V R + KSIGC K FPGKT LAT++ V +W+ +LA E+ ER
Sbjct: 303 EKTGQWLYDLCRGVESEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLALELEER 362
Query: 347 LEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAP- 405
L D N R A+LLTV Q D + +S SR AL Y+ + S +I N+A
Sbjct: 363 LNKDKETNGRVAKLLTVGVRQLGDKRPSSFSRCCALVHYEAAKLSSDSFAIIKSLNTAGN 422
Query: 406 PISDLTPPLLFLGLSASKFSPLGSHPSIQQFFKPQDHPEPMTSEHS--SLPEQS-TNHDS 462
+ TPPL L LSASKFS S I F P S S S P+ S DS
Sbjct: 423 HQAAWTPPLTLLHLSASKFSDAPSSGGIAGFLSAGVAPGRSVSATSKVSTPQASELKQDS 482
Query: 463 K-KRDKTLLNFNQQTPFQ 479
K+ ++ F Q+ P +
Sbjct: 483 ACKQRGSIQAFFQKAPVK 500
Score = 40.8 bits (94), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 954 CDKCSQPIDINELQEHQDYHFALEL 978
CD+C Q + + E+ EH DYHFAL+L
Sbjct: 623 CDRCGQEVLVWEMPEHNDYHFALDL 647
>gi|77735847|ref|NP_001029622.1| DNA polymerase eta [Bos taurus]
gi|73587313|gb|AAI03397.1| Polymerase (DNA directed), eta [Bos taurus]
gi|296474420|tpg|DAA16535.1| TPA: DNA-directed DNA polymerase eta [Bos taurus]
Length = 711
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/463 (44%), Positives = 292/463 (63%), Gaps = 27/463 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGI+AV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYTSWKGGGIVAVSYEARAFGVTRNMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L ++ + GKA+++KYR+A EV+ V+S F+ ++ER SIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQIRELHGKANLTKYRDASMEVMEVMSRFA-VMERGSIDEAYLDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNND-----EDARKAGVMEWLGQVYSDTDTS 174
ER++ + + I+A L T + GF GP + E+ RK G+++WL + +++ +S
Sbjct: 126 QERLQKLQNQPISADLLPTTCIEGFPQGPTTTEGTVEKEERRKQGLLQWLDSLQTESTSS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+R A+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTMGAVIVEEMRVAIEKQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L+ + I K+R+LGGKLG V+E L M EL +FS QLQSHF E+ SWLY
Sbjct: 240 HGSVPQLFNQVPISKIRNLGGKLGASVIEILGVEYMGELTQFSESQLQSHFGERNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R ++K++GC K FPGKT L+TR V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRPITKTLGCGKNFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNAN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + I N++ ++ PPL
Sbjct: 360 DRVATQLVVSMRIQGDRRLSSLRRCCALTHYDAHKMSHDAFATIRNCNTSGTQTEWAPPL 419
Query: 415 LFLGLSASKF--SPLGSHPSIQQFFKPQDHPEPMTSEHSSLPE 455
+ L L A+KF S P I F ++S+ SSLP+
Sbjct: 420 IMLFLCATKFCSSTPSPGPDITTF---------LSSDPSSLPK 453
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 934 IADSSTVDSAINIADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISN 993
+A +T+ S+ +A ++ C+KC + + ++ EH DYHFALEL + P+S++
Sbjct: 614 VAQKATMTSSF-LAAEDQVPCEKCGSLVPVWDMPEHSDYHFALELQNSFLQPHSSNPQVV 672
Query: 994 SSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
+SS + SKR S L S + ++T++ FFKP
Sbjct: 673 PASSPQ------SKRNPKSPLASNNKRPRPEGMQTLESFFKP 708
>gi|335292187|ref|XP_003356678.1| PREDICTED: DNA polymerase eta [Sus scrofa]
Length = 698
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/462 (44%), Positives = 288/462 (62%), Gaps = 27/462 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGI++V+YEAR GVT+ M D
Sbjct: 7 RVVALLDMDCFFVQVEQRQNPHLKNKPCAVVQYKSWKGGGIVSVSYEARAFGVTKSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ V+S F+ ++ERASIDEA++DLT V
Sbjct: 67 DAKKLCPDLLLAQVLESRGKANLTKYREASAEVMEVMSRFA-MIERASIDEAFVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGFGPDN--------NDEDARKAGVMEWLGQVYSDTDT 173
ER++ + ++A L T++ GF P E+ RK G+++WL + SD +
Sbjct: 126 RERLQKLQGQPVSADLLPTTYIEGF-PQGLTTAEGTVEKEEMRKQGLLQWLDSLQSDNTS 184
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
S + Q L + VIVEE+RAA+ +T CSAGI+HNKVLAKL C LHKP +Q+++
Sbjct: 185 S-----PELQ-LTVGAVIVEEMRAAIERQTGLQCSAGISHNKVLAKLACALHKPNRQTLV 238
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
SV +++ + I KVRHLGGKLG ++E L M EL +F+ QLQSHF EK SWL
Sbjct: 239 SLGSVPQVFSQMPISKVRHLGGKLGASIIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
Y + RGI+HEPV R V+K++GC K FPGKT L TR+ V W+ +LA E+ ERL D
Sbjct: 299 YAMCRGIEHEPVRPRQVTKTLGCGKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRND 358
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPP 413
N R A L VS D +++S R AL Y + + + I N++ ++ +PP
Sbjct: 359 NDRVATQLAVSIRVLGDKRLSSLRRCCALTHYDAHKMSQDAFAAIRNYNTSGIQTEWSPP 418
Query: 414 LLFLGLSASKFSPLGSHPSIQQFFKPQDHPEPMTSEHSSLPE 455
L L L A+KFS + I F ++S+ SSLP+
Sbjct: 419 LTMLFLCATKFSASSAGTDITVF---------LSSDPSSLPK 451
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKS 1005
+A +++C+KC + + E EH DYHFALEL + P+S+++ + + S +
Sbjct: 612 LAAEDQVLCEKCGSLVPVWETPEHSDYHFALELQKSFLQPHSSTSQAVPARSPQ------ 665
Query: 1006 SKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
SKR S L S + + T++ FFKP
Sbjct: 666 SKRNPKSPLASSHKRPRPEGMLTLETFFKP 695
>gi|301757340|ref|XP_002914510.1| PREDICTED: DNA polymerase eta-like [Ailuropoda melanoleuca]
gi|281345709|gb|EFB21293.1| hypothetical protein PANDA_002412 [Ailuropoda melanoleuca]
Length = 712
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/432 (47%), Positives = 273/432 (63%), Gaps = 18/432 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+ QVE + NP L KP AVVQY +WKGGGI+AV+YEAR GVTR M D
Sbjct: 7 RVVVLVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIVAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKAD++KYR A EV+ V+S F+ I ERASIDEA+IDLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKADLTKYREASVEVMGVMSRFAGI-ERASIDEAFIDLTGAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--------GPDNNDEDARKAGVMEWLGQVYSDTDT 173
ER++ + I+A L T++ G G D +E RK G+ +WL + D T
Sbjct: 126 QERLQKLQGQPISADLLPTTYIEGLPQGRTTAEGTDQKEE-TRKQGLFQWLESLRIDNTT 184
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
S D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP Q+++
Sbjct: 185 S-----PDLQ-LTVGAVIVEEMRAAIEKETGFQCSAGISHNKVLAKLACGLNKPNHQTLV 238
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
SV L++ + I ++R+LGGKLG V+E L M EL +F+ QLQSHF EK SWL
Sbjct: 239 SLGSVPQLFSQMPISRIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
Y + RGI+H+PV R + K+IGC K FPGKT LAT++ V W+ +LA E+ ERL D
Sbjct: 299 YGMCRGIEHDPVRPRQLPKTIGCSKNFPGKTALATQEQVQWWLLQLAHELEERLTKDRND 358
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPP 413
N R A L V + D +++S R AL Y + + VI N++ +D +PP
Sbjct: 359 NDRVATQLAVIIRVQGDKRLSSVRRCCALTRYDAHKMSHDAFAVIRNCNTSGIRTDWSPP 418
Query: 414 LLFLGLSASKFS 425
L + L A+KFS
Sbjct: 419 LTMVFLCATKFS 430
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 29/116 (25%)
Query: 937 SSTVDSAINIAD-------PT----KIICDKCSQPIDINELQEHQDYHFALELSTTS-EP 984
+ST +SA+ +A PT +++C+KC + + E+ EH DYHFALEL + +P
Sbjct: 606 ASTSNSALPVAQKSTTSPSPTAAEDQVLCEKCGSLVPVWEMPEHTDYHFALELQKSFLQP 665
Query: 985 PNSTSNISNSSSSSKILNKK-----SSKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
+S S + +SS N K S+KR RP K ++T++ FFKP
Sbjct: 666 HSSNSQVVPASSPQSKRNPKSPSASSNKRPRP------------KGMQTLESFFKP 709
>gi|157817057|ref|NP_001101674.1| DNA polymerase eta [Rattus norvegicus]
gi|149069361|gb|EDM18802.1| polymerase (DNA directed), eta (RAD 30 related) (predicted) [Rattus
norvegicus]
Length = 689
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/429 (48%), Positives = 283/429 (65%), Gaps = 15/429 (3%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR+M D+
Sbjct: 8 VVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWADD 67
Query: 65 AKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAYIDLT+ V
Sbjct: 68 AKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFA-VIERASIDEAYIDLTNAVQ 126
Query: 125 ERMKSIGH--IAASQLSNTFVVGF--GPDNND----EDARKAGVMEWLGQVYSDTDTSLM 176
ER++ + ++A L +T++ G GP D ED RK G+++WLG + D TS
Sbjct: 127 ERLEKLQGQPVSADLLPSTYIEGLPRGPAVEDTVEKEDIRKQGLLQWLGSLEKDDPTS-- 184
Query: 177 ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
D + L + VIVEE+RAA+ KT F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 185 ---PDLR-LTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG 240
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
SV L++ + I+K+R LGGKLG V++ L M +L +F+ QLQSHF EK SWLY +
Sbjct: 241 SVPQLFSQMPIRKIRSLGGKLGASVIDVLGVEYMGDLTQFTEAQLQSHFGEKNGSWLYAM 300
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
RGI+HEPV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D T N R
Sbjct: 301 CRGIEHEPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRTDNGR 360
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLF 416
A L VS E D +++S R AL Y + + + I N++ ++ +PPL
Sbjct: 361 VATQLVVSIRVEGDKRLSSLRRCCALTRYDAHKMSQDAFATIRNCNTSGVQTEWSPPLTM 420
Query: 417 LGLSASKFS 425
L L A+KFS
Sbjct: 421 LFLCATKFS 429
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 951 KIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGR 1010
+++C+KC + + ++ EH DYHFALEL + P +S + KR
Sbjct: 609 QVLCEKCDSLVPVWDMPEHLDYHFALELQKSFLQP-------CTSKPQAVPVSPQGKRNP 661
Query: 1011 PSKLNSFKNSENFKKLKTIDQFFKP 1035
S L S ++T++ FFKP
Sbjct: 662 KSPLASSNKRLRPHGMQTLESFFKP 686
>gi|426250341|ref|XP_004018895.1| PREDICTED: DNA polymerase eta [Ovis aries]
Length = 708
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/462 (44%), Positives = 290/462 (62%), Gaps = 26/462 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGI+AV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYTSWKGGGIVAVSYEARAFGVTRNMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V + GKA+++KYR A EV+ ++S F+ ++ER SIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRELHGKANLAKYREASMEVMEIMSRFA-VMERGSIDEAYLDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGFGPDNN------DEDARKAGVMEWLGQVYSDTDTSL 175
ER++ + + I+A L T + GF + E+ RK G+++WL + +++ +S
Sbjct: 126 QERLQKLQNQRISADLLPTTCIEGFPQGSTTEGTVEKEERRKQGLLQWLDSLQTESTSS- 184
Query: 176 MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQ 235
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 185 ----PDLQ-LTMGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSH 239
Query: 236 SSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY 295
SV L+ + I +VR+LGGKLG V+E L M EL +FS QLQSHF E+ SWLY
Sbjct: 240 GSVPQLFNQVPINRVRNLGGKLGASVIEILGVEYMGELTQFSESQLQSHFGERNGSWLYA 299
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
+ RGI+H+PV R ++K+IGC K FPGKT L+TR V W+ +LA E+ ERL D N
Sbjct: 300 MCRGIEHDPVKPRPITKTIGCSKNFPGKTALSTRFQVQWWLLQLAQELEERLTKDRNAND 359
Query: 356 RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLL 415
R A L VS + D +++S R AL Y + + I N++ ++ PPL+
Sbjct: 360 RVATQLVVSMRIQGDRRLSSLRRCCALTHYDAHKMSHDAFATIRNCNTSGTQTEWFPPLI 419
Query: 416 FLGLSASKF--SPLGSHPSIQQFFKPQDHPEPMTSEHSSLPE 455
L L A+KF S P I F ++S+ SSLP+
Sbjct: 420 MLFLCATKFCSSTPSPGPDITTF---------LSSDPSSLPK 452
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 934 IADSSTVDSAINIADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISN 993
+A +T+ S++ +A ++ C+KC + + ++ EH DYHFALEL + P+S SN+
Sbjct: 611 VAQKATMTSSL-LAAEDQVPCEKCGSLVPVWDMPEHSDYHFALELQNSFLQPHS-SNLQV 668
Query: 994 SSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
SS SKR S L S + ++T++ FFKP
Sbjct: 669 VPPSS-----PQSKRNPKSPLASNNKRPRPEGMQTLESFFKP 705
>gi|344263722|ref|XP_003403945.1| PREDICTED: DNA polymerase eta [Loxodonta africana]
Length = 718
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 222/491 (45%), Positives = 297/491 (60%), Gaps = 30/491 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AV QY +WKGGGIIAV+YEAR GV R M D
Sbjct: 10 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVAQYRSWKGGGIIAVSYEARAFGVARSMWAD 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKAD++KYR A EV+ V+S F+ I ERASIDEA+IDLT V
Sbjct: 70 DAKKLCPDLLLVQVHESRGKADLTKYREASVEVMEVMSRFAGI-ERASIDEAFIDLTSAV 128
Query: 124 HERMKSIGH--IAASQLSNTFVVGFGPDN--------NDEDARKAGVMEWLGQVYSDTDT 173
ER++ + I+A L +T++ G P E+ RK G+ +WL + D
Sbjct: 129 RERLQKLQGQPISADLLPSTYIEGL-PQGYTTTEGTVRKEEMRKQGLFQWLDSLQIDNTA 187
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
S D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP Q+++
Sbjct: 188 S-----PDLQ-LTMGAVIVEEVRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNSQTLV 241
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
SV L++ + I KVR+LGGKLG VV L M EL +F+ QLQSHF EK SWL
Sbjct: 242 SHGSVPQLFSQMPITKVRNLGGKLGASVVGILGIEYMGELTQFTESQLQSHFGEKNGSWL 301
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
Y + RGI+H+PV R + K+IGC K FPGKT L TR+ V W+ +LA E+ ERL D
Sbjct: 302 YAVCRGIEHDPVKPRQLPKTIGCGKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRND 361
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPP 413
N R A LTV+ + D +++S R AL Y + + V+ N++ ++ +PP
Sbjct: 362 NDRMATQLTVTIRVQGDKRLSSLRRCCALTHYDAHKMSHDAFAVLRNCNTSGIQTEWSPP 421
Query: 414 LLFLGLSASKFSPLG--SHPSIQQFFK--PQDHPE-PMTSEHS----SLPEQSTNHDSKK 464
L L LSA+KF G S P I F P P+ P+TS + S P +T +KK
Sbjct: 422 LTMLFLSATKFYASGPSSCPDITVFLSNDPSSLPKVPVTSSEAKTQGSGPSVTT---TKK 478
Query: 465 RDKTLLNFNQQ 475
+L +F Q+
Sbjct: 479 ATSSLESFFQK 489
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 951 KIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGR 1010
++ C++C + + E+ EH DYHFALEL + P S ++S + SKR
Sbjct: 637 QVPCERCGSLVPVWEMPEHMDYHFALELQKSFLQPYSRKPQVVPATSPQ------SKRNP 690
Query: 1011 PSKLNSFKNSENFKKLKTIDQFFKP 1035
S L S + ++T++ FFKP
Sbjct: 691 KSPLASSNKRPRPEGMQTLESFFKP 715
>gi|195379088|ref|XP_002048313.1| GJ11416 [Drosophila virilis]
gi|194155471|gb|EDW70655.1| GJ11416 [Drosophila virilis]
Length = 871
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/456 (44%), Positives = 285/456 (62%), Gaps = 25/456 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+CQVE K P GKPLAVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 17 RVVLLVDMDCFFCQVEEKQQPEYQGKPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 76
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ C +I LC+VP++R KAD KYR+AG+EV VL F+N++ERAS+DEAY+D+T+ V
Sbjct: 77 EAKELCHDIILCQVPNIREKADTGKYRDAGKEVANVLQRFTNLLERASVDEAYLDITETV 136
Query: 124 HERMKSI--GHIA--ASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-- 177
++R++ + G A +L N VG+ DN + K + Y D + ++
Sbjct: 137 NQRVEQLQAGSFALKPQELVNCHAVGY--DNIGDYVNK--ITNRFANPYVDDERYMLAYD 192
Query: 178 -------NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ 230
D + L I I E+RAAV ++T + CSAGIAHNK+LAKL G++KP KQ
Sbjct: 193 PNDLPAVRQSDLR-LLIGACIAGEVRAAVKAETGYECSAGIAHNKILAKLAAGMNKPNKQ 251
Query: 231 SILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+ILP + + L+ L + K++ LGGK G+ V ETL + ++ K+S K+LQ +EK
Sbjct: 252 TILPLAEIPALFDQLPVGKIKGLGGKFGETVCETLGVKFLGQVLKYSEKELQRKLDEKNG 311
Query: 291 SWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
SWL+ IARGID E V R SKSIGCCK+FPG+ + + + HW+ ELA E+ +RLE D
Sbjct: 312 SWLHNIARGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELASEMNDRLEKD 371
Query: 351 LTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNS-----AP 405
N R+A+ + V + Q+ DG+ + SRS + Y + + + ++++I +TN+ A
Sbjct: 372 FIENNRKAKQMVVQYVQDVDGQEVASSRSTPINHYDQETLAKQALELI-RTNTKTFLRAG 430
Query: 406 PISDLTPPLLFLGLSASKFSPLGS-HPSIQQFFKPQ 440
+ L + FLG+S KF S S+Q F Q
Sbjct: 431 SEAALNNAIKFLGISVGKFETASSAQNSLQTMFANQ 466
>gi|354506314|ref|XP_003515209.1| PREDICTED: DNA polymerase eta [Cricetulus griseus]
Length = 695
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 211/437 (48%), Positives = 283/437 (64%), Gaps = 17/437 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAYIDLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFA-VIERASIDEAYIDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNND----EDARKAGVMEWLGQVYSDTDTSL 175
+R++ + I+A L T++ G GP + E+ RK G+++WLG + D TS
Sbjct: 126 QDRLEKLQGQPISADLLPTTYIEGLPRGPTVEETVQKEEIRKQGLLQWLGSLQIDDATS- 184
Query: 176 MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQ 235
D Q L + VIVEE+RAA+ KT F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 185 ----PDLQ-LTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSH 239
Query: 236 SSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY 295
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 GSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYA 299
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
+ RGI+H+PV R + KSIGC K FPGKT LATR V W+ +LA E+ ERL D N
Sbjct: 300 MCRGIEHDPVKPRQLPKSIGCSKNFPGKTALATRDQVQWWLLQLALELEERLTKDRNDND 359
Query: 356 RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLL 415
R A L VS + D +++S R AL Y + + + I N++ ++ +PPL
Sbjct: 360 RVATQLAVSIRVQGDKRLSSLRRCCALTQYDAHKMSQDAFAAIRNCNTSGIQTEWSPPLT 419
Query: 416 FLGLSASKFSPLGSHPS 432
L L A+KFS S PS
Sbjct: 420 MLFLCATKFS--ASAPS 434
Score = 46.6 bits (109), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 951 KIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGR 1010
+++C+KC + + ++ EH DYHFALEL + P ++ + + S + KR
Sbjct: 614 QVLCEKCDSLVPVWDMPEHTDYHFALELQKSFLQPCTSKPQAVPAMSPQ------GKRNP 667
Query: 1011 PSKLNSFKNSENFKKLKTIDQFFKP 1035
S L S ++T++ FFKP
Sbjct: 668 KSPLASSNKRLRIHGMQTLESFFKP 692
>gi|195128223|ref|XP_002008564.1| GI11744 [Drosophila mojavensis]
gi|193920173|gb|EDW19040.1| GI11744 [Drosophila mojavensis]
Length = 894
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/455 (44%), Positives = 286/455 (62%), Gaps = 23/455 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+CQVE K +P GKPLAVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 17 RVVLLVDMDCFFCQVEEKQHPEYQGKPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 76
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ C +I LC+VP++R KAD SKYR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V
Sbjct: 77 EAKELCHDIILCKVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 136
Query: 124 HERMKSI--GHIA--ASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-- 177
++R++ + G A +L N VG+ DN E K + Y D + ++
Sbjct: 137 NQRVEQLQTGSFALKPEELVNCHAVGY--DNIGEYVNK--ITNRFSNPYVDDERYVLAYD 192
Query: 178 -------NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ 230
D + L I I E+RAAV ++T + CSAGIAHNK+LAKL G++KP KQ
Sbjct: 193 PNDLPAVRQSDLR-LLIGACIAGEVRAAVKAETGYECSAGIAHNKILAKLAAGMNKPNKQ 251
Query: 231 SILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+ILP + + L+ L + K++ +GGK G+ V ETL + ++ K+S K LQ +EK+
Sbjct: 252 TILPLAQIPPLFDQLPVGKIKGMGGKFGETVCETLGVKFLGQVLKYSEKDLQRKLDEKSG 311
Query: 291 SWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
+WL+ IARGID E V R SKSIGCCK+FPG+ + + + HW+ ELA E+ +RLE D
Sbjct: 312 TWLHNIARGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELASEINDRLEKD 371
Query: 351 LTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVI--NKTNSAPPIS 408
N R+A+ + V + Q+ DG+ + SRS+ L + +V+ S+++I N P S
Sbjct: 372 FIENNRKAKQMVVQYVQDIDGQEVASSRSMPLNQCDQETLVKQSLELIKANTKTFLRPGS 431
Query: 409 D--LTPPLLFLGLSASKF-SPLGSHPSIQQFFKPQ 440
+ L + FLG+S KF S + S+Q F Q
Sbjct: 432 EAALNNAIKFLGISVGKFESASSAQNSLQTMFANQ 466
>gi|307168868|gb|EFN61792.1| DNA polymerase eta [Camponotus floridanus]
Length = 764
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/438 (46%), Positives = 262/438 (59%), Gaps = 67/438 (15%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
+T RI+ LIDMDCF+CQVE KL P GKPLAVVQYN W+ GGIIAVNY+AR GVTRHM
Sbjct: 4 LTDRIVVLIDMDCFFCQVETKLQPQHEGKPLAVVQYNQWEMGGIIAVNYQARSFGVTRHM 63
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
RG EAK+ CP+I L VP +RGKAD S+Y YI +
Sbjct: 64 RGKEAKEKCPDIVLVSVPCLRGKADTSRY-------------------------IYIYIY 98
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
V+ + R G+ W+ + + + +T
Sbjct: 99 MCVYL----------------------------EERSQGLQTWISDSFKE-----LHDTH 125
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
Q+LA+AGVIVEEIRA++ +T+F CSAGIA NK+LAKL CGLHKP Q+ILP+++VS
Sbjct: 126 A-QKLAVAGVIVEEIRASIYKETKFRCSAGIAQNKILAKLACGLHKPNCQTILPKTAVSS 184
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
L++ L +KKVR+LGGK GD VVE+L C+ M +L ++SL+QLQ F+EKT WLY IARGI
Sbjct: 185 LFSTLPVKKVRNLGGKFGDIVVESLGCNVMGDLVQYSLEQLQKRFDEKTGFWLYNIARGI 244
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D EPV RL+SKSI CK+FPGK + + + + HW ++L EVCERLE D N+RRA L
Sbjct: 245 DDEPVTNRLLSKSIAACKKFPGKQAITSLEVLKHWAKDLTAEVCERLEQDYEENQRRATL 304
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLS 420
LT+S+ + S +RS+ L SYK I + VI K P+ ++G+S
Sbjct: 305 LTISYHYYQNRSTVSQTRSLVLNSYKPDKIASQCVDVITKATQC--------PVAYMGIS 356
Query: 421 ASKFSPLGSHPSIQQFFK 438
ASKF P S +FFK
Sbjct: 357 ASKFVPSKESDSFLKFFK 374
>gi|126310086|ref|XP_001366117.1| PREDICTED: DNA polymerase eta [Monodelphis domestica]
Length = 704
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/433 (46%), Positives = 279/433 (64%), Gaps = 18/433 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGII+ +YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIISASYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ + +V RGKA+++KYR+A EV+ V+S F+ ++ER+SIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLIVQVRETRGKANLAKYRDASVEVMEVMSRFA-VIERSSIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--------GPDNNDEDARKAGVMEWLGQVYSDTDT 173
ER++ + + A+ L++T++ GF GP +E R+ GV++WL + D +
Sbjct: 126 QERLQKLQAQPVTANLLASTYIQGFPHGTRALEGPIQKEE-IRQQGVIQWLESLPVDDPS 184
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
S D + L + VIVEE+R A+ T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 185 S-----SDLR-LTVGAVIVEEMRVAIEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
SV L+++L I K+R+LGGKLG V+ TL M EL +F+ QLQSHF EK SWL
Sbjct: 239 SHGSVPQLFSHLPIGKIRNLGGKLGASVIGTLGVEYMGELTQFTELQLQSHFGEKNGSWL 298
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
Y + RGI+H+PV R + K+IGC K FPG T L T++ V W+ +LA E+ ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGITALTTQEQVKWWLLQLAQELEERLTKDQKD 358
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPP 413
N R A L VS + D +++S R ALA Y + + +I N+A ++ PP
Sbjct: 359 NDRVALQLAVSIRIQGDKRLSSLRRCCALAYYDAHKMSSDAFALIRNCNTAGIKTEWAPP 418
Query: 414 LLFLGLSASKFSP 426
L L L A+KFSP
Sbjct: 419 LTMLFLCATKFSP 431
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 938 STVDSAINIADPT--------KIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTS 989
S +DSA+ +A ++ C+KC I + E+ EH DYHFA+EL +
Sbjct: 601 SLLDSAVKVATSVPLFPDAEDQLCCEKCGSLILVWEMPEHMDYHFAMELQRS-----FLG 655
Query: 990 NISNSSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFFKPKSQ 1038
S + +KR S L S + +T++ FFKP S+
Sbjct: 656 PCSPKPPVVPPTSPSQAKRSPKSPLPSSAKRLRPEGTRTLESFFKPLSR 704
>gi|260803774|ref|XP_002596764.1| hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae]
gi|229282024|gb|EEN52776.1| hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae]
Length = 354
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/356 (53%), Positives = 243/356 (68%), Gaps = 16/356 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IAL+DMDCFY QVE + +PSL GKP AVVQY W+GGGIIAV YEAR KGVTR MRGD
Sbjct: 5 RVIALVDMDCFYVQVEQRRDPSLRGKPCAVVQYKKWQGGGIIAVGYEARAKGVTRQMRGD 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CPEI L RVP RGKAD+++YR+AGREVI VL +FS VERASIDEAYIDLT+ V
Sbjct: 65 EAKKKCPEITLVRVPESRGKADLTRYRDAGREVIEVLCKFSRCVERASIDEAYIDLTEEV 124
Query: 124 HERMKSIG--HIAASQLSNTFVVGFGPDNNDEDAR------KAGVMEWLGQVYSDTDTSL 175
+R++ G + LS+T V G+ D + + GV +WL D+
Sbjct: 125 MKRLEERGPDSVTVDMLSSTHVAGWQTDTAGQSSESEEINLAVGVYQWL-------DSLR 177
Query: 176 MENTEDF-QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
M + + + LA+ I EE+RAAV +T FHCSAGI HNKVLAKL CGLHKP++Q++LP
Sbjct: 178 MRDASMYDRRLAVGAAIAEEMRAAVERETGFHCSAGIGHNKVLAKLCCGLHKPKQQTVLP 237
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
+SV LY+ L IKKVR GGKLG + E L M +L FS K+LQ+ +K +WLY
Sbjct: 238 HASVPQLYSTLPIKKVRGCGGKLGASLTEELGVEYMGQLAAFSEKELQAKCGDKCGTWLY 297
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
+ RGID+E V R V++SIGC K FPG+ CL T++ V HW+ +L E+ ERL+ D
Sbjct: 298 NLCRGIDYEAVKDRQVAQSIGCGKNFPGRECLDTKEKVLHWLTQLTSELAERLQKD 353
>gi|17105328|ref|NP_109640.1| DNA polymerase eta [Mus musculus]
gi|59798431|sp|Q9JJN0.1|POLH_MOUSE RecName: Full=DNA polymerase eta; AltName: Full=RAD30 homolog A;
AltName: Full=Xeroderma pigmentosum variant type protein
homolog
gi|8918248|dbj|BAA97570.1| XPV [Mus musculus]
gi|26331290|dbj|BAC29375.1| unnamed protein product [Mus musculus]
gi|148691533|gb|EDL23480.1| polymerase (DNA directed), eta (RAD 30 related) [Mus musculus]
Length = 694
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/430 (47%), Positives = 282/430 (65%), Gaps = 15/430 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAYIDLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSYFA-VIERASIDEAYIDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNND----EDARKAGVMEWLGQVYSDTDTSL 175
ER++ + I+A L +T++ G GP + E RK G+++WL + SD TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPRGPTVEETVQKEAIRKQGLLQWLDSLQSDDPTS- 184
Query: 176 MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQ 235
D + L + +IVEE+RAA+ SKT F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 185 ----PDLR-LTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSH 239
Query: 236 SSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY 295
SV L++ + I+K+R LGGKLG V+E L M +L +F+ QLQSHF EK SWLY
Sbjct: 240 GSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYA 299
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 MCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRNDND 359
Query: 356 RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLL 415
R A L VS + D +++S R AL Y + + + I N++ ++ +PPL
Sbjct: 360 RVATQLVVSIRFQGDRRLSSLRRCCALPRYDAHKMSQDAFAAIRNCNTSGIQTEWSPPLT 419
Query: 416 FLGLSASKFS 425
L L A+KFS
Sbjct: 420 MLFLCATKFS 429
Score = 40.8 bits (94), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 29/140 (20%)
Query: 913 INKGNGNADVSPMDTVDI---INTIADSSTV-DS-AINIADPTK------IICDKCSQPI 961
++ G + V P+ + + +N DS V DS A N + T+ ++C+KC +
Sbjct: 564 VDSGPDDGAVKPVSSKAVSTEMNVAGDSPNVLDSPAYNSQEVTQRATEDQVLCEKCDSLV 623
Query: 962 DINELQEHQDYHFALELS------TTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSKLN 1015
+ ++ EH DYHFALEL TS+P + + K + SSKR RP
Sbjct: 624 PVWDMPEHTDYHFALELQKSFLQPCTSKPQAIPAVSPQGKRNPKSPSASSSKRLRP---- 679
Query: 1016 SFKNSENFKKLKTIDQFFKP 1035
++T++ FFKP
Sbjct: 680 --------HGMQTLESFFKP 691
>gi|195022393|ref|XP_001985566.1| GH17135 [Drosophila grimshawi]
gi|193899048|gb|EDV97914.1| GH17135 [Drosophila grimshawi]
Length = 871
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/453 (44%), Positives = 282/453 (62%), Gaps = 19/453 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+CQVE K P GKPLAVVQYN W+GGGIIAVNY AR KGVTRHMRGD
Sbjct: 17 RVVLLVDMDCFFCQVEEKQQPQHRGKPLAVVQYNAWRGGGIIAVNYAARDKGVTRHMRGD 76
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CP+I LC+VP++R KAD SKYR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V
Sbjct: 77 EAKALCPDIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETV 136
Query: 124 HERMKSI--GHIA--ASQLSNTFVVGF---GPDNNDEDARKAGVM---EWLGQVYSDTDT 173
++R++ + G +A +L N++ VG+ G N R A E Y D
Sbjct: 137 NQRVQQLETGSLALKPEELVNSYAVGYENIGDYVNKITKRFANPYVDDERFMLAYDANDL 196
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
+ ++ L I I E+RAAV ++T + CSAGIAHNK+LAKLV G++KP KQ+IL
Sbjct: 197 PAVRQSD--LRLLIGACIAGEVRAAVKAETGYECSAGIAHNKILAKLVAGMNKPNKQTIL 254
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
P + + L+ L + K++ LGGK G+ V ETL + + K++ K+LQ +EK+ +WL
Sbjct: 255 PLAEIPALFDQLPVGKIKGLGGKFGETVCETLGIKFLGHVLKYTEKELQRKLDEKSGTWL 314
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
+ IA GID E V R SKSIGCCK+FPG+ + + + HW+ ELA E+ +RLE D
Sbjct: 315 HQIACGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELASEMNDRLEKDFIE 374
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNS-----APPIS 408
N R+A+ + V F Q+ G+ S SRS L + ++++I K N+ A +
Sbjct: 375 NNRKAKQMVVQFVQDIGGEEVSSSRSSPLNHCDQDTLARQALELI-KANTKTFLRAGSDA 433
Query: 409 DLTPPLLFLGLSASKF-SPLGSHPSIQQFFKPQ 440
L + FLG+S KF + + S+Q F Q
Sbjct: 434 ALNNAVKFLGISVGKFETASNTQNSLQAMFANQ 466
>gi|402867084|ref|XP_003897698.1| PREDICTED: DNA polymerase eta isoform 2 [Papio anubis]
Length = 414
Score = 381 bits (979), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/410 (48%), Positives = 266/410 (64%), Gaps = 16/410 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAYIDLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYIDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDE-----DARKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R+LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSA 404
R A L VS + D +++S R AL Y + + VI N++
Sbjct: 360 DRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTS 409
>gi|403261354|ref|XP_003923088.1| PREDICTED: DNA polymerase eta isoform 2 [Saimiri boliviensis
boliviensis]
Length = 414
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/410 (47%), Positives = 265/410 (64%), Gaps = 16/410 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDE-----DARKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + +D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETIQKEGMRKQGLFQWLDSLQTDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT L TR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSA 404
R A L VS + D +++S R AL Y + + VI N++
Sbjct: 360 DRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKNYNTS 409
>gi|16041729|gb|AAH15742.1| POLH protein [Homo sapiens]
gi|119624614|gb|EAX04209.1| polymerase (DNA directed), eta, isoform CRA_a [Homo sapiens]
Length = 414
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/410 (48%), Positives = 265/410 (64%), Gaps = 16/410 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDE-----DARKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSA 404
R A L VS + D +++S R AL Y + + VI N++
Sbjct: 360 DRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTS 409
>gi|426353300|ref|XP_004044135.1| PREDICTED: DNA polymerase eta [Gorilla gorilla gorilla]
Length = 415
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/410 (48%), Positives = 265/410 (64%), Gaps = 16/410 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDE-----DARKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSA 404
R A L VS + D +++S R AL Y + + VI N++
Sbjct: 360 DRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTS 409
>gi|327262355|ref|XP_003215990.1| PREDICTED: DNA polymerase eta-like [Anolis carolinensis]
Length = 689
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/432 (47%), Positives = 278/432 (64%), Gaps = 19/432 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL DMDCFY QVE +L PSL GKP V QY TWKGGGIIAV+YEAR GVTR+M
Sbjct: 7 RVVALADMDCFYIQVEQRLEPSLRGKPCVVAQYKTWKGGGIIAVSYEARAFGVTRNMWAA 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP+++L RVP GKAD+++YR A EV+ V+S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLQLARVPEAHGKADLTRYREASVEVMEVMSRFA-VIERASIDEAYMDLTSAV 125
Query: 124 HERMKSI-GH-IAASQLSNTFVVGF-------GPDNNDEDARKAGVMEWLGQV-YSDTDT 173
HER++ + G I A QL+ T++ GF G +N E+ R G+ +WL + + D
Sbjct: 126 HERLQKMRGQPIVAEQLATTYIQGFPDSFALEGTTDNKEEWRLHGLRQWLESLPFED--- 182
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
+ N E +L + VI+EE+RAAV S T F CS GI+HNKVLAKL CGL+KP +Q+++
Sbjct: 183 --LSNPE--LQLTVGAVIMEEMRAAVESATGFRCSVGISHNKVLAKLACGLNKPNRQTLV 238
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
Q SV L++ + I +R+LGGKLG V E L + +L +FS QLQ HF +KT SWL
Sbjct: 239 SQGSVPQLFSKMPIGNIRNLGGKLGASVTELLGVEYVGQLIQFSELQLQMHFGDKTGSWL 298
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
Y + RGI+HEPV R + KSIGC K F G+ L T++ V HW+ +LA E+ ERL D
Sbjct: 299 YDLCRGIEHEPVKPRQLPKSIGCSKNFRGREALVTQKQVQHWLLQLALELEERLNKDRDQ 358
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPI-SDLTP 412
N R A+ L++ + + SR AL+ Y I + + VI N+A + + +P
Sbjct: 359 NNRTAKQLSIGIRMQGSKNPSGLSRCCALSQYDAHKISQDAFAVIQNCNAAGGLQAAWSP 418
Query: 413 PLLFLGLSASKF 424
P+ L LSA+KF
Sbjct: 419 PVTLLQLSATKF 430
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 952 IICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRP 1011
I+C+KC Q + + E EH DYHFA+EL + + +S+ + L K +K RP
Sbjct: 608 ILCEKCKQQVAVWEFTEHLDYHFAVELQNSF---SGSSSFKPPAPVGSFLAKGKNKP-RP 663
Query: 1012 SKLNSFKNSENFKKLKTIDQFFKPK 1036
+S K ++T+D FFK K
Sbjct: 664 HAASSAKRPRQ-DTVRTLDTFFKRK 687
>gi|198430107|ref|XP_002128588.1| PREDICTED: similar to polymerase (DNA directed), eta [Ciona
intestinalis]
Length = 785
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/433 (44%), Positives = 270/433 (62%), Gaps = 21/433 (4%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
++R++ L+DMDCFY QVE + + SL GKP AVVQYN WKGGGIIAV+YEAR +GVTR+MR
Sbjct: 13 SNRVVVLVDMDCFYVQVEQRRDSSLKGKPCAVVQYNQWKGGGIIAVSYEARDEGVTRNMR 72
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
GD+AK CPEI LC+VP GKAD+++YR+AG EVI VL +F +VERAS+DEAYIDLT
Sbjct: 73 GDDAKAKCPEIILCKVPMANGKADLTRYRDAGAEVIQVLLQFGGVVERASVDEAYIDLTS 132
Query: 122 VVHERMKSIGHIA-ASQLSNTFVVGFGPDNNDE--DARKAGVMEWLGQVYSDTDTSLMEN 178
VV MK + Q+ NT+VVG+ D+ D+ +AR++G+ + SD D
Sbjct: 133 VVDASMKEKRILPDLEQMGNTYVVGYPKDSCDDTTNARESGLSAYRDSANSDPDA----- 187
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
+ L +A IVE++R A+ +T F CSAGI+HNK+L+KL CG++KP KQ+ILP + V
Sbjct: 188 ----ERLLVAAAIVEKMRLAIYQQTSFRCSAGISHNKMLSKLSCGINKPNKQTILPFNMV 243
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
+ L+ + I K+R+LGGKLG E++ + L + + L F EKT WLY +
Sbjct: 244 AGLFQTIKIGKIRNLGGKLGKEIMFRFGVEKIGHLTNQTKQHLVDGFGEKTGLWLYEVCH 303
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
GIDHEPV R V++S+GC K F G L +R V HW++ L E+ ERL D +N R +
Sbjct: 304 GIDHEPVKERHVAQSVGCSKNFTGNDALGSRNKVKHWVRCLTTELVERLNKDKQMNNRVS 363
Query: 359 QLLTVSFTQETDGKVNSCSRSIALASYKLQDIVE---VSMQVINKTNSAPPISDLTPPLL 415
LT+ G SR+ ++ Y + DI +++ +N TN +P +
Sbjct: 364 HALTIHI-----GIKKPISRTCPISRYDVDDITMRCLATLETLN-TNQDKESDTWSPKIT 417
Query: 416 FLGLSASKFSPLG 428
+G+SA F +G
Sbjct: 418 NIGISAKNFQSIG 430
>gi|291396262|ref|XP_002714741.1| PREDICTED: DNA-directed DNA polymerase eta [Oryctolagus cuniculus]
Length = 687
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/432 (45%), Positives = 274/432 (63%), Gaps = 18/432 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVVLVDMDCFFVQVEQRENPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V GKA+++KYR A EV+ V+S F+ I ERASIDEA++DLTD V
Sbjct: 67 DAKKLCPDLLLAQVRESHGKANLTKYREASVEVMEVMSRFAGI-ERASIDEAFLDLTDAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGFGPDNN--------DEDARKAGVMEWLGQVYSDTDT 173
ER++ + I+A L +T++ G P + E+ RK G+++WLG + +
Sbjct: 126 EERLQKLQGQPISADLLPSTYIEGL-PQGSTTAEETVQKEEMRKQGLLQWLGSLEIEGTA 184
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
S D + L + VIVEE+RAA+ KT CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 185 S-----PDVR-LTMGAVIVEEMRAAIERKTGLQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
V L++ + I+KVR+LGGKLG V+ L M EL +F+ QLQ HF EK SWL
Sbjct: 239 SHKFVPQLFSQVPIRKVRNLGGKLGSSVIAILGIEYMGELTQFTESQLQWHFGEKNGSWL 298
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
Y + RGI+H+PV R + KS+GC K FPG+T LAT + V W+ +LA E+ ERL D T
Sbjct: 299 YAMCRGIEHDPVRPRQIPKSVGCSKNFPGQTALATPEQVQWWLLQLARELEERLTKDQTD 358
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPP 413
N R A L VS + D +++S R A+ Y + + + I N++ ++ +PP
Sbjct: 359 NDRMATQLAVSIRVQGDKRLSSLRRCCAITRYDAHKMSQDAFAAIRNCNTSGLQTEWSPP 418
Query: 414 LLFLGLSASKFS 425
L L L A+KF+
Sbjct: 419 LTMLLLCATKFA 430
Score = 47.8 bits (112), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 952 IICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKS--SKRG 1009
+ C+KC + + E+ EH DYHFALEL S + SS+ +++ KS KR
Sbjct: 607 VSCEKCGSLVLVWEMPEHLDYHFALEL--------HESFLQAHSSNPQVVPVKSPQGKRN 658
Query: 1010 RPSKLNSFKNSENFKKLKTIDQFFKP 1035
S L S + ++T++ FFKP
Sbjct: 659 PKSPLASSNKRPRPQGMRTLESFFKP 684
>gi|395832422|ref|XP_003789270.1| PREDICTED: DNA polymerase eta [Otolemur garnettii]
Length = 414
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/411 (47%), Positives = 267/411 (64%), Gaps = 18/411 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFFVQVEQQQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ V+S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEVMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGFGPDN--------NDEDARKAGVMEWLGQVYSDTDT 173
ER++ + I+A L T++ G P N E R G+++WL + SD T
Sbjct: 126 QERLQKLQGQPISADLLPTTYIEGL-PRNPATAEEAVQKEKMRNQGLLQWLHSLQSDDST 184
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
S D Q L + +IVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 185 S-----PDLQ-LTVGAMIVEEMRAAIEKQTGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
+SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF K SWL
Sbjct: 239 SHASVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGGKNGSWL 298
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
Y + RGI+H+PV R + K+IGC K FPGKT L+TR+ V W+ +LA E+ ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALSTREQVQWWLLQLAQELEERLTKDRND 358
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSA 404
N R A LTVS + D +++S R AL+ Y + + VI N++
Sbjct: 359 NDRVATQLTVSIRVQGDKRLSSLRRCCALSRYDAYKMSHDAFAVIKNCNTS 409
>gi|443700616|gb|ELT99496.1| hypothetical protein CAPTEDRAFT_172544 [Capitella teleta]
Length = 620
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 203/432 (46%), Positives = 269/432 (62%), Gaps = 12/432 (2%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+IAL+DMDCFY QVE +L P G P AVVQY T+KGGGIIAV YEAR GVTR M G
Sbjct: 2 GRVIALVDMDCFYVQVEQRLKPEFKGHPCAVVQYRTYKGGGIIAVGYEARALGVTRGMMG 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+A++ CP I L RVP GKAD++ YR AG EVI VL+ FS VERASIDEAY+DLTD
Sbjct: 62 QDAQEKCPNIHLFRVPETEGKADLTLYREAGAEVIEVLTGFSKCVERASIDEAYVDLTDE 121
Query: 123 VHERMKSI---GHIAASQLSNTFVVGFGPDNNDED---ARKAGVMEWLGQVYSDTDTSLM 176
VH+R+ + I+ L NT+V+G + D R+ G++ WL S +D +
Sbjct: 122 VHKRLAGMEENQEISPDWLPNTYVLGCEEEEKCTDKSVQRERGLITWL---RSQSDAHTV 178
Query: 177 ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
E ++LA+ VIVEE+RA V + T F CSAGIA NK+LAKLVCG++KP KQ++LP S
Sbjct: 179 NEHE--KQLAVGAVIVEEMRARVHTVTGFRCSAGIASNKMLAKLVCGINKPNKQTLLPFS 236
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
++ + + +KKVR GGK G+ V E LQ TM ++ +FS QLQ F +KT SWLY
Sbjct: 237 NILHFFGGVKVKKVRGFGGKFGESVCEQLQVETMGDIRRFSRNQLQECFGDKTGSWLYDT 296
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
RG + E V R ++KS+GC K F G L T++ V W+ ++ E+ ERL D N R
Sbjct: 297 CRGQETEDVIDRQLTKSVGCSKNFRGPEMLVTKEQVKLWLSRMSKEIEERLLKDRASNNR 356
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTN-SAPPISDLTPPLL 415
A+ L V + KV S SR +L Y Q + + + +++K N S S +PP+
Sbjct: 357 VAKSLHVHIQYVVNKKVTSASRCASLVRYNAQKLADDAYLLLSKFNRSLLHQSSWSPPIT 416
Query: 416 FLGLSASKFSPL 427
+G+SASKFS L
Sbjct: 417 CMGISASKFSDL 428
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 952 IICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSN-----ISNSSSSSKILNKKSS 1006
+ C+KC Q + E+ EH DYHFA +L S + ++ S + + +
Sbjct: 536 VTCEKCQQSVSAWEMPEHLDYHFAADLQDEENALRSGNGRPKGALAPPVSLKRKVGETGK 595
Query: 1007 KRGRPSKLNSFKNS 1020
+GRPSKL +N
Sbjct: 596 SKGRPSKLAKSQNG 609
>gi|195440450|ref|XP_002068055.1| GK12166 [Drosophila willistoni]
gi|194164140|gb|EDW79041.1| GK12166 [Drosophila willistoni]
Length = 864
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/457 (44%), Positives = 281/457 (61%), Gaps = 25/457 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW-KGGGIIAVNYEARHKGVTRHMRG 62
R+I L+DMDCF+CQVE K P KPLAVVQ++ W K GGIIAVNY AR KG+TRHMR
Sbjct: 16 RVILLVDMDCFFCQVEEKEQPIYRNKPLAVVQFSNWSKNGGIIAVNYAARAKGITRHMRA 75
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
DEAK PEI L +VP++R KAD +KYR+AG+EV VL +F+ +ERAS+DEAY+D+T+
Sbjct: 76 DEAKDLLPEIVLVKVPNIRDKADTTKYRDAGKEVANVLQKFTKQLERASVDEAYLDITET 135
Query: 123 VHERMKSIGHIAAS----QLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDT-SLME 177
V++R K + A + +L NTF VG+ DN E K + + Y D + L+
Sbjct: 136 VNQRQKELQTGAFTLQPQELVNTFAVGY--DNMGEYVNK--ITKRFSNPYMDDERFQLVY 191
Query: 178 NTEDFQ-------ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ 230
+ D L I I E+RAAV +T + CSAG+AHNK+LAKL GL+KP KQ
Sbjct: 192 DQNDLPSVRQSDIRLLIGACIAGEVRAAVKKETGYECSAGVAHNKILAKLAAGLNKPNKQ 251
Query: 231 SILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+ILP + L+ L + K++ LGGK G+ V ETL + EL KFS +LQ F+EK
Sbjct: 252 TILPLDEIPGLFETLPVGKIKGLGGKFGEIVCETLSIKFLGELLKFSEGELQRKFDEKNG 311
Query: 291 SWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
+WL I RGID E V R SKSIGCCK+FPG+ + + + HW+ ELA E+ ERLE D
Sbjct: 312 TWLANICRGIDLECVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLSELATEITERLEKD 371
Query: 351 LTLNKRRAQLLTVSFTQETDGKVNSCSRSIALAS-YKLQDIVEVSMQVINKTNS-----A 404
N RRA+ + V + Q+ DG+ + SRS AL + Y + + +S+ +I K N+ A
Sbjct: 372 AIENNRRAKQMVVQYVQDLDGEEVASSRSNALPNHYDKETLANISLDLI-KANTKTFLRA 430
Query: 405 PPISDLTPPLLFLGLSASKFSPLGSHPS-IQQFFKPQ 440
+ L + FLG+S KF + ++ + +Q+ F Q
Sbjct: 431 GSDAALNNSIKFLGISVGKFETITNNQNKLQEMFANQ 467
>gi|444725442|gb|ELW66006.1| DNA polymerase eta [Tupaia chinensis]
Length = 681
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/431 (45%), Positives = 268/431 (62%), Gaps = 38/431 (8%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALLDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAYIDLT V
Sbjct: 67 DAKKLCPDLLLAQVRECRGKANLTKYREASVEVMQIMSRFA-VIERASIDEAYIDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNND-----EDARKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L T++ GF GP + E+ RK G+ +WL + +
Sbjct: 126 QERLQKLQGQPISADLLPTTYIEGFPQGPATAEDTVEKEEMRKKGLFQWLDSL------A 179
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
L+ +T +L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 180 LVNSTSPDLQLTVGAVIVEEMRAAIERQTSFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 LGSVPQLFSQMPICKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + KSIGC K FPGKT LATR+ N
Sbjct: 300 AMCRGIEHDPVKPRQLPKSIGCSKNFPGKTALATREQ----------------------N 337
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL+ Y + + I N++ ++ +PPL
Sbjct: 338 DRVATQLAVSIRVQGDKRLSSLRRCCALSHYDAHKMSHDAFAAIRNCNTSGIQTEWSPPL 397
Query: 415 LFLGLSASKFS 425
L L A+KFS
Sbjct: 398 TMLFLCATKFS 408
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 24/135 (17%)
Query: 913 INKGNGNADVSPMDTVDIINTIADSSTVDSAINIAD-PT------KIICDKCSQPIDINE 965
+ +G A + MD + S SA+ +A P+ ++ C+KC + + E
Sbjct: 556 LKQGPSKAAPAEMDVTQNSPSTPACSASKSALEVAQTPSLSAAEDQVPCEKCGSLVPVWE 615
Query: 966 LQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKK-----SSKRGRPSKLNSFKNS 1020
+ EH DYHFALEL + P+S+ + + S N K S+KR RP
Sbjct: 616 MPEHTDYHFALELQKSFLQPHSSPQVVPAMSPKGKRNPKSPLASSNKRTRP--------- 666
Query: 1021 ENFKKLKTIDQFFKP 1035
+ ++T++ FFKP
Sbjct: 667 ---EGMQTLESFFKP 678
>gi|355561734|gb|EHH18366.1| hypothetical protein EGK_14943 [Macaca mulatta]
Length = 690
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/438 (45%), Positives = 270/438 (61%), Gaps = 40/438 (9%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSSV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R+LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQ----------------------N 337
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 338 DRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPL 397
Query: 415 LFLGLSASKFSPLGSHPS 432
L L A+KFS S PS
Sbjct: 398 TMLFLCATKFS--ASAPS 413
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 925 MDTVDIINTIADSSTVDSAINI---ADPT--------KIICDKCSQPIDINELQEHQDYH 973
MD ++ SS SA+ + A PT ++ C+KC + + ++ EH DYH
Sbjct: 572 MDLAHNSQSMHASSASKSALEVTQKATPTPSILAAEDQVPCEKCGSLVPVWDMPEHMDYH 631
Query: 974 FALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFF 1033
FALEL + P+S SN S + ++ KR S L + ++T++ FF
Sbjct: 632 FALELQKSFLQPHS----SNPQVVSTVSHQ--GKRNPKSPLACTNKRPRPEGMQTLESFF 685
Query: 1034 KP 1035
KP
Sbjct: 686 KP 687
>gi|355748582|gb|EHH53065.1| hypothetical protein EGM_13625 [Macaca fascicularis]
Length = 690
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/438 (45%), Positives = 270/438 (61%), Gaps = 40/438 (9%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSSV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R+LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQ----------------------N 337
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 338 DRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPL 397
Query: 415 LFLGLSASKFSPLGSHPS 432
L L A+KFS S PS
Sbjct: 398 TMLFLCATKFS--ASAPS 413
Score = 47.0 bits (110), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 925 MDTVDIINTIADSSTVDSAINI---ADPT--------KIICDKCSQPIDINELQEHQDYH 973
MD ++ SS SA+ + A PT ++ C+KC + + ++ EH DYH
Sbjct: 572 MDLAHNSQSMHASSASKSALEVTQKATPTPSILAAEDQVPCEKCGSLVPVWDMPEHMDYH 631
Query: 974 FALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFF 1033
FALEL + P+S SN S + ++ KR S L + ++T++ FF
Sbjct: 632 FALELQKSFLQPHS----SNPQVVSTVSHQ--GKRNPKSPLACTNKRPRPEGMQTLESFF 685
Query: 1034 KP 1035
KP
Sbjct: 686 KP 687
>gi|53134355|emb|CAG32324.1| hypothetical protein RCJMB04_23b13 [Gallus gallus]
Length = 693
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/430 (46%), Positives = 272/430 (63%), Gaps = 18/430 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + +P L G+P AVVQYN W+GGGIIAV+YEAR GV+R M
Sbjct: 7 RVVALVDMDCFFMQVEQRFDPRLRGRPCAVVQYNQWQGGGIIAVSYEARAFGVSRGMWAT 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA+ CPE+ L RVP RGKAD+++YR A EV+ VLS F+ I ERASIDEAY+DLT
Sbjct: 67 EARALCPELLLARVPEARGKADLTRYREASAEVMEVLSRFAAI-ERASIDEAYLDLTGSA 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGFGPD-----NNDEDARKAGVMEWLGQVYSDTDTSLM 176
ER++ + + A L TFV G + + E+ R+ G+ EWL + D
Sbjct: 126 RERLRELRGRPLEAELLPTTFVQGLPAEPGLQPADKEELRRRGLQEWLASLSFDN----- 180
Query: 177 ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
N D Q LA+ VIVEEIR AV T F CSAGI+HNK+LAKL CGL+KP +Q+++
Sbjct: 181 VNCPDLQ-LAMGAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTLVSSR 239
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
SV L++ + + +R+LGGKLG + + L + E+ KFS +LQ+HF +KT SWLY +
Sbjct: 240 SVPQLFSQMPVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDL 299
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
RGID EPV R + +SIGC K FPGKT LAT+++V HW+ +LA E+ RL D + N R
Sbjct: 300 CRGIDDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELESRLIKDRSQNHR 359
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPP-ISDLTPPLL 415
A+ L V + D ++ SR A+ Y Q I + +I N A + +PPL+
Sbjct: 360 VAKQLMVVIRMQGDTRL---SRFCAVTRYDAQKIFNDAFALIQNCNMAGAHQAAWSPPLI 416
Query: 416 FLGLSASKFS 425
+ L+ASKFS
Sbjct: 417 SVHLAASKFS 426
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 954 CDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISN--------SSSSSKILNKKS 1005
C+KC Q + EL EH DYHFA+EL + + P+S ++ S S +K+ NK
Sbjct: 607 CEKCGQYVLAWELPEHMDYHFAVELQRSFQEPSSPPALAEVPIAKAAASGSPAKVRNKAK 666
Query: 1006 SKRGRPSKLNSFKNSENFKKLKTIDQFFK 1034
+ P+ N+ + E+ +T+D FFK
Sbjct: 667 A----PAGPNAKRPRESVA--RTLDFFFK 689
>gi|50838832|ref|NP_001001304.1| DNA polymerase eta [Gallus gallus]
gi|31442180|dbj|BAC77302.1| polymerase eta [Gallus gallus]
Length = 673
Score = 371 bits (952), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 201/430 (46%), Positives = 272/430 (63%), Gaps = 18/430 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + +P L G+P AVVQYN W+GGGIIAV+YEAR GV+R M
Sbjct: 7 RVVALVDMDCFFMQVEQRFDPRLRGRPCAVVQYNQWQGGGIIAVSYEARAFGVSRGMWAT 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA+ CPE+ L RVP RGKAD+++YR A EV+ VLS F+ I ERASIDEAY+DLT
Sbjct: 67 EARALCPELLLARVPEARGKADLTRYREASAEVMEVLSRFAAI-ERASIDEAYLDLTGSA 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGFGPD-----NNDEDARKAGVMEWLGQVYSDTDTSLM 176
ER++ + + A L TFV G + + E+ R+ G+ EWL + D
Sbjct: 126 RERLRELRGRPLEAELLPTTFVQGLPAEPGLQPADKEELRRRGLQEWLASLSFDN----- 180
Query: 177 ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
N D Q LA+ VIVEEIR AV T F CSAGI+HNK+LAKL CGL+KP +Q+++
Sbjct: 181 VNCPDLQ-LAMGAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTLVSSR 239
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
SV L++ + + +R+LGGKLG + + L + E+ KFS +LQ+HF +KT SWLY +
Sbjct: 240 SVPQLFSQMPVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDL 299
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
RGID EPV R + +SIGC K FPGKT LAT+++V HW+ +LA E+ RL D + N R
Sbjct: 300 CRGIDDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELESRLIKDRSQNHR 359
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPP-ISDLTPPLL 415
A+ L V + D ++ SR A+ Y Q I + +I N A + +PPL+
Sbjct: 360 VAKQLMVVIRMQGDTRL---SRFCAVTRYDAQKIFNDAFALIQNCNMAGAHQAAWSPPLI 416
Query: 416 FLGLSASKFS 425
+ L+ASKFS
Sbjct: 417 SVHLAASKFS 426
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 954 CDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSK 1013
C+KC Q + EL EH DYHFA+EL + + P+S + +++ K++ G P+K
Sbjct: 607 CEKCGQYVLAWELPEHMDYHFAVELQRSFQEPSSPPAL------AEVPIAKAAASGSPAK 660
Query: 1014 LN 1015
+
Sbjct: 661 VG 662
>gi|390332295|ref|XP_001183938.2| PREDICTED: DNA polymerase eta-like [Strongylocentrotus purpuratus]
Length = 774
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 199/429 (46%), Positives = 259/429 (60%), Gaps = 21/429 (4%)
Query: 19 ECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVP 78
E + +P+L GKP AVVQYN+WKGG IIAV+YEAR GVTR MRG EA+ CP I+L VP
Sbjct: 160 EQRRDPTLKGKPAAVVQYNSWKGGAIIAVSYEARAFGVTRQMRGAEARGKCPAIQLVTVP 219
Query: 79 SVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI---GHIA- 134
RGKAD+++YR AG EVI VL ++S+ VERAS+DEAY+D+TD V R+ + G +
Sbjct: 220 ENRGKADLTRYREAGAEVITVLCKYSDSVERASVDEAYVDVTDQVQTRLAQMEDQGQVLD 279
Query: 135 ASQLSNTFVVG--FGPDNND-EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVI 191
QL TF+ G + D ED RK G+ WL +D T + L + +I
Sbjct: 280 PEQLHQTFIAGHDVAEEGVDIEDVRKRGLETWL--TSADLAT---------KRLGVGALI 328
Query: 192 VEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVR 251
EE+RAAV T F CSAGI+HNK+LAK+ CG HKP +QS+LP + +Y + I+K R
Sbjct: 329 AEEMRAAVFKDTGFRCSAGISHNKMLAKIACGFHKPNRQSVLPPEGLDKVYKTIPIRKFR 388
Query: 252 HLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVS 311
+LGGKLG + E L M +L +++ KQLQ + EKT +WLY I RGID EPV R ++
Sbjct: 389 NLGGKLGHSISEDLGVEYMGDLLRYTEKQLQKRYSEKTGTWLYSICRGIDDEPVRPRQLA 448
Query: 312 KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDG 371
KS GC K FPGK L TR V HW + LA+EV RL + N R A+ LTVS Q
Sbjct: 449 KSTGCSKTFPGKNALDTRDKVKHWFRSLAEEVEHRLLREEETNNRTAKHLTVSVGQAGKP 508
Query: 372 KVNSCSRSIALASYKLQDIVEVSMQVINKTNSAP-PISDLTPPLLFLGLSASKFSPLGSH 430
+ + SRS A+ + I + VI N A + +P + +LG+SASKF GS
Sbjct: 509 LMTTASRSCAIHQISSEKIAKDCFSVIQNLNHAGNHQAAWSPAITYLGISASKFVEGGSS 568
Query: 431 P--SIQQFF 437
SIQ F
Sbjct: 569 KSGSIQSFL 577
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 107/146 (73%), Gaps = 4/146 (2%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ LIDMDCFY QVE + NP+L GKP AVVQYN+WKGG IIAV+YEAR GVTR MRG
Sbjct: 3 RVVILIDMDCFYVQVEQRRNPTLKGKPAAVVQYNSWKGGAIIAVSYEARAFGVTRQMRGA 62
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA+ CP I+L VP RGKAD+++YR AG EVI VL ++S+ VERAS+DEAY+D+TD V
Sbjct: 63 EARGKCPAIQLVTVPENRGKADLTRYREAGAEVITVLCKYSDSVERASVDEAYVDVTDQV 122
Query: 124 HERMKSI---GHIA-ASQLSNTFVVG 145
R+ + G + QL TF+ G
Sbjct: 123 QTRLAQMEDQGQVLDPEQLHQTFIAG 148
>gi|340368085|ref|XP_003382583.1| PREDICTED: DNA polymerase eta-like [Amphimedon queenslandica]
Length = 583
Score = 358 bits (919), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 192/436 (44%), Positives = 279/436 (63%), Gaps = 20/436 (4%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+ +++ L+DMDCFY QVE +L+P L KP A+VQYN W+GG IIAV+YEAR GV R ++
Sbjct: 6 SGKVVVLVDMDCFYVQVEKRLHPELKDKPCAIVQYNKWQGGSIIAVDYEARKYGVKRSLK 65
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
G EAK+ CP I L +VP R KAD+S YR A EV+ VLS F++++ERASIDEA++DLT+
Sbjct: 66 GKEAKEKCPGIHLVQVPEKRRKADLSNYRKASGEVMKVLSGFTSVIERASIDEAFLDLTE 125
Query: 122 VVHERMKSIGHIAA---SQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
V + + S + + L +T V G D++ + S D
Sbjct: 126 PVKDYINSNSFDSLEFHADLKSTHVAGCNDDDDTHKDDCDLRI-------SRGDWFKSSC 178
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
+ D + L +A ++V+ IR +L++ F CSAGI+HNK+LAKL G+HKP +Q+ILPQS V
Sbjct: 179 SSDERVLIVAAILVQRIRETILNEVGFTCSAGISHNKMLAKLAAGMHKPNQQTILPQSQV 238
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
++++ +KKVRHLGGKLG++V + L+ + +L+++SLK LQ F KT SWLY + R
Sbjct: 239 DVVFSTTLLKKVRHLGGKLGEQVQDKLKIECVGQLQEYSLKVLQEKFGLKTGSWLYELCR 298
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
GI HE ++ R+++KSIGC K FPG + L T + V +W+++L+ E+ ERLE+D+T N R+A
Sbjct: 299 GICHEKISNRIITKSIGCGKNFPGPSKLKTAKAVKYWLEQLSRELVERLEEDMTENTRQA 358
Query: 359 QLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISD------LTP 412
Q +TV F E G+ +S +R+ AL SY IV S INK + P+++ T
Sbjct: 359 QSITVHFLPE--GQASSVARTFALPSYNTSLIVNNSWNAINKGHK--PVTNEESHLTWTT 414
Query: 413 PLLFLGLSASKFSPLG 428
+L + LSA KF G
Sbjct: 415 GILNIHLSAGKFVQCG 430
>gi|149583604|ref|XP_001516192.1| PREDICTED: DNA polymerase eta [Ornithorhynchus anatinus]
Length = 729
Score = 356 bits (913), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 198/438 (45%), Positives = 274/438 (62%), Gaps = 23/438 (5%)
Query: 1 MTS---RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVT 57
MTS R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVT
Sbjct: 1 MTSGQERVVALVDMDCFFVQVEQRQNPELRNKPCAVVQYKSWKGGGIIAVSYEARAFGVT 60
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
R M D+AK+ CP++ L +V +RGKA+++KYR A +V+ V+S F+ ++ER SIDEAY+
Sbjct: 61 RSMWADDAKKLCPDLLLAQVREIRGKANLTKYREASVKVMEVMSRFA-VIERGSIDEAYV 119
Query: 118 DLTDVVHERMKSI-GH-IAASQLSNTFVVGFGPDNND--------EDARKAGVMEWLGQV 167
DLT VV ER++ + G + A L T+V G P + E AR+ G+ +WL +
Sbjct: 120 DLTQVVQERLQKLRGQPVPADLLPTTYVQGL-PRGSGAAQGAPQKEQARQEGLGQWLDSL 178
Query: 168 -YSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHK 226
+ D+ ++ D + L + VIVEE+RAA+ T + CSAGI+HNKVLAKL CGL+K
Sbjct: 179 PFGDS------SSPDLR-LTVGAVIVEEMRAAIEKDTGYQCSAGISHNKVLAKLACGLNK 231
Query: 227 PQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE 286
P +Q++L V L+ + I K+R LGGKLG + + L M +L F+ QLQSHF
Sbjct: 232 PNRQTLLSHGFVPELFDQMPIGKIRSLGGKLGASITDNLGVEYMGQLTHFTESQLQSHFG 291
Query: 287 EKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCER 346
EKT SWL+ + RGI+H+PV R V ++GC K FPGKT LAT + V W+ +LA E+ ER
Sbjct: 292 EKTGSWLFAMCRGIEHDPVKPRQVPNTVGCSKNFPGKTALATEEQVQWWLLQLALELEER 351
Query: 347 LEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPP 406
L D N R A L+VS + D +++S R L Y + + ++ +I N A
Sbjct: 352 LNKDRDDNDRVATHLSVSARIQGDKRLSSLRRGCPLTRYDARKMSSDALALIRSCNLAET 411
Query: 407 ISDLTPPLLFLGLSASKF 424
+ +PPL L L A KF
Sbjct: 412 QAAWSPPLTMLLLCAHKF 429
Score = 48.9 bits (115), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 876 SSDHSQMTSATKADFIKESGDPNNEMCKSTVQFHSNSINKGNGNADVS---PMDTVDIIN 932
SS Q TS +G+P S V + + + V P ++++
Sbjct: 563 SSGERQPTSEDPPGKPLPAGEPPARSSASRVAPEAGPPATASAESAVGRSGPGQRPELLS 622
Query: 933 TIADSSTVDSAINIADPT------KIICDKCSQPIDINELQEHQDYHFALELSTTSEPPN 986
+ +S+ D A P ++ C+KC + E+ EH DYHFA+EL + P+
Sbjct: 623 SFPESAPGDGGEAAAAPGPLDAEDQVCCEKCGSLVLAWEMPEHADYHFAVELQNSFLKPH 682
Query: 987 STSNISNSSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFFK 1034
S + ++++S K++ K S L S K +T++ FFK
Sbjct: 683 PLS-LPTATAASPSPTKRNPK----SPLASAAKRPRPKGTQTLESFFK 725
>gi|332234353|ref|XP_003266375.1| PREDICTED: DNA polymerase eta [Nomascus leucogenys]
Length = 723
Score = 349 bits (895), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 199/453 (43%), Positives = 265/453 (58%), Gaps = 38/453 (8%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNK+ L P Q +
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKID-----NLTSPDLQLTVG 234
Query: 235 QSSVSMLYANL---------------SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLK 279
V + A + S R LGGKLG V+E L M EL +F+
Sbjct: 235 AVIVEEMGAAIERETDIYDVTYQFFVSFVISRSLGGKLGASVIEILGIEYMGELTQFTES 294
Query: 280 QLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQEL 339
QLQSHF EK SWLY + RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +L
Sbjct: 295 QLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQL 354
Query: 340 ADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVIN 399
A E+ ERL D N R A L VS + D +++S R AL Y + + VI
Sbjct: 355 AQELEERLTKDRNDNDRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 414
Query: 400 KTNSAPPISDLTPPLLFLGLSASKFSPLGSHPS 432
N++ ++ +PPL L L A+KFS S PS
Sbjct: 415 NCNTSGIQTEWSPPLTMLFLCATKFS--ASAPS 445
Score = 46.2 bits (108), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTTS-EPPNSTSNISNSSSSSKILNKK 1004
+A ++ C+KC + + ++ EH DYHFALEL + +P +S + ++ S N K
Sbjct: 637 LAAEDQVPCEKCGSLVPVWDMPEHMDYHFALELQKSFLQPHSSNPQVVSAVSHQGKRNPK 696
Query: 1005 SS-----KRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
S KR RP + ++T++ FFKP
Sbjct: 697 SPLACTIKRPRP------------EGMQTLESFFKP 720
>gi|449496783|ref|XP_004174688.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase eta [Taeniopygia
guttata]
Length = 699
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 262/430 (60%), Gaps = 18/430 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R ++++DMD FY QVE +L+ + P VVQY W+ GGIIAV++EAR GV+R M
Sbjct: 7 REVSMVDMDXFYMQVEQRLDQQMRVPPCIVVQYTDWQDGGIIAVSFEARAFGVSRGMWAS 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA+ CPE+ L RVP RGKAD++ YR A EV+ VLS F+ I ERASIDEAY+DLT
Sbjct: 67 EARALCPELALARVPQARGKADLTPYREASAEVMRVLSRFAAI-ERASIDEAYLDLTGSA 125
Query: 124 HERMKSIGHIA--ASQLSNTFVVGF----GPD-NNDEDARKAGVMEWLGQVYSDTDTSLM 176
R++ + A+ L +TFV G GPD E+ R+ G+ EWL + D
Sbjct: 126 RLRLRELRGRPLPATLLPSTFVQGLPGEPGPDPAGKEELRQRGLDEWLASLSFDNP---- 181
Query: 177 ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
+ D Q L + VIVEEIR AV T F CSAGI+HNK LAKL CGL+KP +Q+++
Sbjct: 182 -DCPDLQ-LTMGAVIVEEIRVAVEEATGFRCSAGISHNKTLAKLACGLNKPNRQTLVSAR 239
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
V L++ L + +R+LGGKLG + + L + EL +FS +LQ+HF +KT SWLY +
Sbjct: 240 FVPQLFSQLPVSSIRNLGGKLGTAITDILGVEYIGELTQFSETELQTHFGDKTGSWLYDL 299
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
RGI+ EPV R + +SIGC K FPGK LAT++ V HW+ +LA E+ RL D + N R
Sbjct: 300 CRGIEEEPVKNRYLPQSIGCSKNFPGKLALATQKAVQHWLLQLALELESRLNKDRSQNHR 359
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPP-ISDLTPPLL 415
A+ L V Q+ D +V SR AL+ Y Q + + +I N A + +PPL+
Sbjct: 360 VARQLMVVIRQQGDTRV---SRLCALSRYDAQKMCNDAFTLIQTCNVAGAHQAAWSPPLI 416
Query: 416 FLGLSASKFS 425
+ LSASKFS
Sbjct: 417 SVQLSASKFS 426
Score = 46.6 bits (109), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 18/92 (19%)
Query: 954 CDKCSQPIDINELQEHQDYHFALEL-------STTSEP---PNSTSNISNSSSSSKILNK 1003
C+KC Q + + E EH DYHFALEL S + P PN+ + S S + +K NK
Sbjct: 613 CEKCGQLVLVWEFPEHMDYHFALELQRSFLEPSPSMAPEAAPNAKAVASRSPAKAK--NK 670
Query: 1004 KSSKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
+ G +S K + +T+D FFKP
Sbjct: 671 PKTPAG-----SSIKRPKE-GVTRTLDFFFKP 696
>gi|47223238|emb|CAF98622.1| unnamed protein product [Tetraodon nigroviridis]
Length = 671
Score = 345 bits (885), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 191/449 (42%), Positives = 258/449 (57%), Gaps = 59/449 (13%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCFY QVE ++NP+L P V QY TWKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRINPALKNTPCVVAQYKTWKGGGIIAVSYEARAHGVTRNMWVD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++++ RV GKAD++ YR A EVI V+S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLQVARVRESHGKADLTLYREASVEVIEVMSRFA-VIERASIDEAYMDLTAAV 125
Query: 124 HERMKSI--GHIAASQLSNTFVVGFGPD------------NNDEDARKAGVMEWLGQVYS 169
+R+K + I A L T+V GF P+ ++ E+ R G+ +WL +
Sbjct: 126 QQRLKDLNNWQIQAHLLKATYVQGFPPNPPERPAATEDVAHDREEQRARGLQQWLAML-- 183
Query: 170 DTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQK 229
+ E + +LA+ +IVEE+RAAV T F CSAGI+HNKVLAKL CGL+KP +
Sbjct: 184 -PLPAAGEQSSAELQLAVGALIVEEMRAAVEKDTGFRCSAGISHNKVLAKLACGLNKPNR 242
Query: 230 QSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKT 289
Q++LP SV L+++L I K++
Sbjct: 243 QTLLPLGSVGELFSSLPIGKIQ-------------------------------------- 264
Query: 290 ASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED 349
WLY + RG+D E V R + KSIGC K FPGKT LAT++ V +W+ +LA E+ ERL
Sbjct: 265 --WLYDLCRGVDFEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLNQLALELEERLTK 322
Query: 350 DLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPP-IS 408
D N R A++LTV Q D + +S SR AL Y+ + S +I N+A P +
Sbjct: 323 DREANGRVAKMLTVGVRQLGDKRPSSFSRCCALVRYEATKLATDSFAIIRSLNTAGPHQA 382
Query: 409 DLTPPLLFLGLSASKFSPLGSHPSIQQFF 437
TPPL L LSA+KFS S I F
Sbjct: 383 TWTPPLTMLHLSATKFSDAPSAGKIAGFL 411
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 940 VDSAINIADPTK-----IICDKCSQPIDINELQEHQDYHFALELSTTSEPPNS------- 987
+DS +++ P+ I CD+C Q + + E+ EH DYHFAL+L + P S
Sbjct: 563 IDSGVSLQPPSVSSEDLIGCDRCGQQVSVWEMPEHNDYHFALDLQNSLSSPASSVARTAA 622
Query: 988 ---TSNISNSSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFFK 1034
T+ + +++ KS RG+ + + S+ L T+D FFK
Sbjct: 623 CSPTARRGGAEGAAQSCRGKSKPRGQLGPQSKRQRSQG-GGLGTLDSFFK 671
>gi|156387566|ref|XP_001634274.1| predicted protein [Nematostella vectensis]
gi|156221355|gb|EDO42211.1| predicted protein [Nematostella vectensis]
Length = 345
Score = 339 bits (870), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 228/346 (65%), Gaps = 11/346 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IAL+DMDCFY QVE + P L GKP AVVQYN WKGGGIIAV+YEAR GVTR+MRGD
Sbjct: 6 RVIALVDMDCFYVQVEQRRCPELKGKPCAVVQYNAWKGGGIIAVSYEARACGVTRNMRGD 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAKQ CP+I L +VP +RGKA+++ YR+AG EV+ VL+ + + ERAS+DEAY+DLT+
Sbjct: 66 EAKQKCPDIALVQVPVLRGKANLAHYRDAGAEVLEVLTTYCDNCERASVDEAYLDLTNSA 125
Query: 124 HERMK--SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+++ ++ IA T + G +D EWL Q +E +
Sbjct: 126 QKKLSVMTVPEIAEEVWRTTAIEGLSSKGSDTTISDELQKEWLSQ---------LEASPY 176
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+ LA VI E+R AVL KT F CSAG+A NKVLAKL CGL+KP KQ++LP S+V+ L
Sbjct: 177 LRNLAAGAVIAAEMRHAVLEKTGFTCSAGVATNKVLAKLCCGLNKPDKQTLLPHSAVTNL 236
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
+ + ++KVRHLGGKLG ++ L M +L +F + L++ F K LY + RGID
Sbjct: 237 FKTMPLRKVRHLGGKLGSQLHSELNVEFMGDLLQFKINDLKAQFGSKNGELLYNLCRGID 296
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
+EPV AR + KS+ C K FPGKT L+T Q V W+++L +E+ ERL
Sbjct: 297 NEPVRARQLPKSVSCGKNFPGKTKLSTCQQVKFWMEQLVEELHERL 342
>gi|242016043|ref|XP_002428648.1| DNA polymerase IV, putative [Pediculus humanus corporis]
gi|212513311|gb|EEB15910.1| DNA polymerase IV, putative [Pediculus humanus corporis]
Length = 292
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/290 (57%), Positives = 208/290 (71%), Gaps = 7/290 (2%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
TSR+IAL+DMDCFYCQVE +LNP L GKPLAVVQYN WKGGGIIAVNYEAR GVTR MR
Sbjct: 7 TSRVIALVDMDCFYCQVEARLNPELKGKPLAVVQYNQWKGGGIIAVNYEAREYGVTRSMR 66
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
GDEAK+ CP+I L VP++RGKAD+S YR A EV AV SEF V+RASIDEAY+DL+
Sbjct: 67 GDEAKEKCPDIVLVSVPTIRGKADLSNYREASDEVAAVFSEFCECVQRASIDEAYLDLSK 126
Query: 122 VVHERM-KSIGHIAASQLSNTFVVGFGP-DNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
V + + + +I L +T+++G N DE+ R G+ EW+ T+ M
Sbjct: 127 AVDDYIAEHKENIDVRDLPSTYILGHCDLKNKDEEKRLEGLAEWI----RITENEKMVEN 182
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
D++ LAI G+I+E++R+ +L KT FHCSAGIAHNK+LAKL GLHKP+KQ+ILP +SV
Sbjct: 183 ADYK-LAIGGIIMEKMRSKILEKTSFHCSAGIAHNKILAKLTAGLHKPKKQTILPHNSVP 241
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKT 289
LY L I+KV+ LGGKLG V E L + M EL KFSL+ LQ F+EKT
Sbjct: 242 ELYEKLPIRKVKSLGGKLGKHVSEKLSVNYMSELYKFSLQDLQQEFDEKT 291
>gi|242054469|ref|XP_002456380.1| hypothetical protein SORBIDRAFT_03g035050 [Sorghum bicolor]
gi|241928355|gb|EES01500.1| hypothetical protein SORBIDRAFT_03g035050 [Sorghum bicolor]
Length = 636
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 270/474 (56%), Gaps = 47/474 (9%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +DMDCFY QVE + NP+L G+P AVVQYN WKGGG+IAV+YEAR GV R MRGD
Sbjct: 12 RVIAHVDMDCFYVQVEQRRNPALRGQPTAVVQYNDWKGGGLIAVSYEARGFGVKRSMRGD 71
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CP I L +VP RGKAD++ YR+AG EV+A+L+ ERASIDE Y+DLTD
Sbjct: 72 EAKSVCPGINLVQVPVARGKADLNLYRSAGSEVVAILASKGK-CERASIDEVYLDLTDAA 130
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDE---DARKAGVMEWL---GQVYSDTDTSLME 177
E ++ PD+ +E +A K+ ++ L G+ + L
Sbjct: 131 KE----------------MLLQAPPDSQEEIFMEAAKSNILGLLSDAGEKEKNVRAWLCR 174
Query: 178 NTEDFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQ 235
+ D+Q+ LA +IV ++R VL +TQF CSAGIAHNK+LAKLV G+HKP +Q+++P
Sbjct: 175 SDADYQDKLLACGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPS 234
Query: 236 SSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY 295
SSV A+L +KK++ LGGKLG + + L T+ +L F+ +LQ + T +WL+
Sbjct: 235 SSVQDFLASLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEDKLQEQYGVNTGTWLWK 294
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
ARGI E V RL+ KS GC K FPG L V W+ +L +E+ ER++ DL NK
Sbjct: 295 TARGISGEEVEDRLLPKSHGCGKTFPGPRALKNSASVKGWLDQLCEELSERIQSDLNQNK 354
Query: 356 RRAQLLTV----SFTQETDGKVNSCSRSIALASYKLQDIVEVSMQV--------INKTNS 403
R AQ LT+ S E D S+S L Y + I E +M++ + N+
Sbjct: 355 RIAQTLTLHARASKENERDSTKKFPSKSCPL-RYGTRKIQEDAMKLFESGLHEFLESQNT 413
Query: 404 APPISDLTPPLLFLGLSASKFS--PLGSHPSIQQFFKPQDHPEPMTSEHSSLPE 455
I+ L+ ++ASK P G+ ++ P P + SS+PE
Sbjct: 414 GWSITSLS-------VTASKIFDIPSGTSSILRYIKGPNSAAPPAIPDSSSVPE 460
>gi|414880431|tpg|DAA57562.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 480
Score = 328 bits (840), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/366 (47%), Positives = 231/366 (63%), Gaps = 21/366 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +DMDCFY QVE + NP+L G+P AVVQYN WKGGG+IAV+YEAR GV R MRGD
Sbjct: 12 RVIAHVDMDCFYVQVEQRRNPALRGQPTAVVQYNGWKGGGLIAVSYEARGFGVKRSMRGD 71
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP I L +VP RGKAD++ YR+AG EV+A+L+ ERASIDE Y+DLTD
Sbjct: 72 EAKRVCPGINLVQVPVARGKADLNLYRSAGAEVVAILASKGK-CERASIDEVYLDLTDAA 130
Query: 124 HERMKSI------GHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
+E + G + SN ++G D ++++ V WL Q +D L
Sbjct: 131 NEMVLQAPPDSPEGIFMEAAKSN--ILGLPADASEKEKN---VRAWLCQSEADYQDKL-- 183
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
LA +IV ++R VL +TQF CSAGIAHNK+LAKLV G+HKP +Q+++P SS
Sbjct: 184 -------LACGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSS 236
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V L A+L +KK++ LGGKLG + + L T+ +L F+ ++LQ + T +WL+ A
Sbjct: 237 VQDLLASLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGTWLWKTA 296
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRR 357
RGI E V RL+ KS GC K FPG L V W+ +L +E+ ER++ DL NKR
Sbjct: 297 RGISGEEVEDRLLPKSHGCGKTFPGPRALKYSASVKGWLDQLCEELSERIQSDLNQNKRI 356
Query: 358 AQLLTV 363
AQ LT+
Sbjct: 357 AQTLTL 362
>gi|326524061|dbj|BAJ97041.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 542
Score = 325 bits (834), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 171/365 (46%), Positives = 230/365 (63%), Gaps = 19/365 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+DCFY QVE + NP+L G+P AVVQYN WKGGG+IAV+YEAR GV R MRGD
Sbjct: 12 RVIAHLDLDCFYVQVEQRRNPALRGQPTAVVQYNDWKGGGLIAVSYEARKFGVKRSMRGD 71
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CP I L +VP R KAD++ YRNAG EV+A+LS ERASIDE Y+DLTD
Sbjct: 72 EAKNVCPGINLVQVPVSRDKADLNVYRNAGSEVVAILST-KGKCERASIDEVYLDLTDAA 130
Query: 124 HERM-----KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
E + +S G I + + + ++ D D R+ V WL + +D L
Sbjct: 131 KEMLLESPPESSGSIF-EEATKSNILDLPSDAGD---REENVKAWLCRADADYQDKL--- 183
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
LA ++V ++R VL +TQF CSAGIAHNK+LAKLV G+HKP +Q+++P SSV
Sbjct: 184 ------LACGAILVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSV 237
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L +KK++ LGGKLG + + L T+ +L F+ ++LQ ++ T +WL+ AR
Sbjct: 238 QDFLASLPVKKMKQLGGKLGSSLQDDLGVETVGDLLGFTEEKLQEYYGVNTGTWLWKTAR 297
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
GI E V RL+ KS GC K FPG L V W+ +L +E+ ER++ DL+ NKR A
Sbjct: 298 GISGEEVEDRLLPKSHGCGKTFPGPKALKNNSSVKSWLDKLCEELSERIQSDLSCNKRVA 357
Query: 359 QLLTV 363
Q LT+
Sbjct: 358 QTLTL 362
>gi|57900369|dbj|BAD87579.1| putative DNA polymerase [Oryza sativa Japonica Group]
Length = 634
Score = 325 bits (833), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 268/471 (56%), Gaps = 41/471 (8%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +DMDCFY QVE + NP L G+P AVVQYN WKGGG+IAV+YEAR GV R MRGD
Sbjct: 12 RVIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEARKFGVKRSMRGD 71
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CP I L +VP R KAD++ YR+AG EV+ +LS ERASIDE Y+DLTD
Sbjct: 72 EAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTKGK-CERASIDEVYLDLTDAA 130
Query: 124 HERM----KSIGHIAASQLSNTFVVGFGPD-NNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
E + + + + + + ++G D +N ED+ +A WL + +D L
Sbjct: 131 KEMLLESPPELLELIFEEATKSNILGLPSDVSNREDSVRA----WLCRADADYQDKL--- 183
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
L+ +IV ++R VL +TQF CSAGIAHNK+LAKLV G+HKP +Q+++P S+V
Sbjct: 184 ------LSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAV 237
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
+L IKK++ LGGKLG + + L +T+ +L F+ +LQ ++ T +WL+ IAR
Sbjct: 238 QDFLVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIAR 297
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
GI E V RL+ KS GC K FPG L V W+ L +E+ ER++ DL NKR A
Sbjct: 298 GISGEEVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIA 357
Query: 359 QLLTVSFTQETDGKVNSC----SRSIALASYKLQDIVEVSMQV--------INKTNSAPP 406
Q LT+ K +S S+S L Y I E +M++ + N+
Sbjct: 358 QTLTLYARACKKNKSDSIKKFPSKSCPL-RYGTVKIQEDAMKLFESGLHDFLGSQNTKWS 416
Query: 407 ISDLTPPLLFLGLSASKFS--PLGSHPSIQQFFKPQDHPEPMTSEHSSLPE 455
I+ L+ +SASK P+G+ ++ P P + SSLPE
Sbjct: 417 ITSLS-------VSASKIFDIPIGTSSILRYIKGPNSTVSPANLDCSSLPE 460
>gi|115440035|ref|NP_001044297.1| Os01g0757800 [Oryza sativa Japonica Group]
gi|57900368|dbj|BAD87578.1| putative DNA polymerase [Oryza sativa Japonica Group]
gi|113533828|dbj|BAF06211.1| Os01g0757800 [Oryza sativa Japonica Group]
Length = 642
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 268/471 (56%), Gaps = 41/471 (8%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +DMDCFY QVE + NP L G+P AVVQYN WKGGG+IAV+YEAR GV R MRGD
Sbjct: 12 RVIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEARKFGVKRSMRGD 71
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CP I L +VP R KAD++ YR+AG EV+ +LS ERASIDE Y+DLTD
Sbjct: 72 EAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTKGK-CERASIDEVYLDLTDAA 130
Query: 124 HERM----KSIGHIAASQLSNTFVVGFGPD-NNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
E + + + + + + ++G D +N ED+ +A WL + +D L
Sbjct: 131 KEMLLESPPELLELIFEEATKSNILGLPSDVSNREDSVRA----WLCRADADYQDKL--- 183
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
L+ +IV ++R VL +TQF CSAGIAHNK+LAKLV G+HKP +Q+++P S+V
Sbjct: 184 ------LSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAV 237
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
+L IKK++ LGGKLG + + L +T+ +L F+ +LQ ++ T +WL+ IAR
Sbjct: 238 QDFLVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIAR 297
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
GI E V RL+ KS GC K FPG L V W+ L +E+ ER++ DL NKR A
Sbjct: 298 GISGEEVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIA 357
Query: 359 QLLTVSFTQETDGKVNSC----SRSIALASYKLQDIVEVSMQV--------INKTNSAPP 406
Q LT+ K +S S+S L Y I E +M++ + N+
Sbjct: 358 QTLTLYARACKKNKSDSIKKFPSKSCPL-RYGTVKIQEDAMKLFESGLHDFLGSQNTKWS 416
Query: 407 ISDLTPPLLFLGLSASKFS--PLGSHPSIQQFFKPQDHPEPMTSEHSSLPE 455
I+ L+ +SASK P+G+ ++ P P + SSLPE
Sbjct: 417 ITSLS-------VSASKIFDIPIGTSSILRYIKGPNSTVSPANLDCSSLPE 460
>gi|357136514|ref|XP_003569849.1| PREDICTED: DNA polymerase eta-like [Brachypodium distachyon]
Length = 632
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 168/364 (46%), Positives = 228/364 (62%), Gaps = 17/364 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+DCFY QVE + NP+L G+P AVVQYN WKGGG+IAV+YEAR GV R MRGD
Sbjct: 12 RVIAHLDLDCFYVQVEQRRNPALRGQPTAVVQYNDWKGGGLIAVSYEARKFGVKRSMRGD 71
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CP I L +VP R KAD++ YR+AG EV+A+LS ERASIDE Y+DLTD
Sbjct: 72 EAKHVCPGINLVQVPVAREKADLNIYRSAGSEVVAILST-KGKCERASIDEVYLDLTDAA 130
Query: 124 HERM----KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
ER+ I + + + ++ D ++ R+ V WL + +D L
Sbjct: 131 KERLLESPPESSEIIFEEATKSNILDLSSDVSN---REENVRAWLCRADADYQDKL---- 183
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
LA +IV ++R VL +TQF CSAGIAHNK+LAKLV G+HKP +Q+++P SSV
Sbjct: 184 -----LACGAIIVAQLRIKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQ 238
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
A+L +KK++ LGGKLG + + L T+ +L F+ ++LQ ++ T +WL+ ARG
Sbjct: 239 DFLASLPVKKMKQLGGKLGSSLQDDLGVKTVGDLLTFTEEKLQDYYGVNTGTWLWKTARG 298
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
I E V R++ KS GC K FPG L V W+ +L +E+ ER++ DL NKR AQ
Sbjct: 299 ISGEEVEDRILPKSHGCGKTFPGSKALKNNASVKSWLDKLCEELSERIQSDLNSNKRVAQ 358
Query: 360 LLTV 363
LT+
Sbjct: 359 TLTL 362
>gi|30694599|ref|NP_568638.2| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|23954185|emb|CAC94893.1| putative DNA polymerase eta [Arabidopsis thaliana]
gi|332007772|gb|AED95155.1| DNA polymerase eta subunit [Arabidopsis thaliana]
Length = 672
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/364 (46%), Positives = 231/364 (63%), Gaps = 14/364 (3%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R+IA +DMDCFY QVE + P L G P AVVQYN W+GGG+IAV+YEAR GV R MRG
Sbjct: 11 ARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEARKCGVKRSMRG 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
DEAK CP+I+L +VP RGKAD++ YR+AG EV+++L++ S ERASIDE Y+DLTD
Sbjct: 71 DEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAK-SGKCERASIDEVYLDLTDA 129
Query: 123 VHERMKSIGHIAASQLSNTFVVG---FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
E M + + +L + V+ G + D D K V W+ + +D L
Sbjct: 130 A-ESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKL---- 184
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
L+ +IV E+R VL +T+F CSAGIAHNK+LAKL G++KP +Q+++P ++V
Sbjct: 185 -----LSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQ 239
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
L ++L IKK++ LGGKLG + L T+ +L +FS +LQ H+ T +WL+ IARG
Sbjct: 240 ELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARG 299
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
I E V RL+ KS G K FPG L + V HW+ +L++E+ ERL DL NKR A
Sbjct: 300 ISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIAS 359
Query: 360 LLTV 363
LT+
Sbjct: 360 TLTL 363
>gi|297738026|emb|CBI27227.3| unnamed protein product [Vitis vinifera]
Length = 773
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 176/366 (48%), Positives = 228/366 (62%), Gaps = 19/366 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+RIIA IDMDCFY QVE + P L G P AVVQYN+WKGGG+IAV+YEAR GV R MRG
Sbjct: 11 ARIIAHIDMDCFYVQVEQRKQPDLRGLPTAVVQYNSWKGGGLIAVSYEARKFGVKRSMRG 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
DEAKQ CP+I+L +VP RGKAD++ YRNAG EV+++L+ ERASIDE Y+DLTD
Sbjct: 71 DEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGR-CERASIDEVYLDLTDA 129
Query: 123 VHERM-----KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
+ +S+ I L + V+G ND K V WL + +D L
Sbjct: 130 AEAMLAEMPPESLEAIDEEAL-KSHVLGLNEGGND---IKESVRVWLCRSQADHRDKL-- 183
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
LA +IV E+R V +T+F CSAGIAHNK+LAKL ++KP +Q+I+P S
Sbjct: 184 -------LACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSC 236
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V L +L IKK++ LGGKLG + L +T+ +L +FS ++LQ + T +WL+ IA
Sbjct: 237 VRGLLGSLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIA 296
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRR 357
RGI E V +RL+SKS G K FPG L T V +W+ EL +E+ ERL DL NKR
Sbjct: 297 RGISGEEVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRI 356
Query: 358 AQLLTV 363
A LT+
Sbjct: 357 AHTLTL 362
>gi|359472774|ref|XP_002275643.2| PREDICTED: DNA polymerase eta [Vitis vinifera]
Length = 779
Score = 321 bits (822), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 176/366 (48%), Positives = 228/366 (62%), Gaps = 19/366 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+RIIA IDMDCFY QVE + P L G P AVVQYN+WKGGG+IAV+YEAR GV R MRG
Sbjct: 11 ARIIAHIDMDCFYVQVEQRKQPDLRGLPTAVVQYNSWKGGGLIAVSYEARKFGVKRSMRG 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
DEAKQ CP+I+L +VP RGKAD++ YRNAG EV+++L+ ERASIDE Y+DLTD
Sbjct: 71 DEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGR-CERASIDEVYLDLTDA 129
Query: 123 VHERM-----KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
+ +S+ I L + V+G ND K V WL + +D L
Sbjct: 130 AEAMLAEMPPESLEAIDEEAL-KSHVLGLNEGGND---IKESVRVWLCRSQADHRDKL-- 183
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
LA +IV E+R V +T+F CSAGIAHNK+LAKL ++KP +Q+I+P S
Sbjct: 184 -------LACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSC 236
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V L +L IKK++ LGGKLG + L +T+ +L +FS ++LQ + T +WL+ IA
Sbjct: 237 VRGLLGSLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIA 296
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRR 357
RGI E V +RL+SKS G K FPG L T V +W+ EL +E+ ERL DL NKR
Sbjct: 297 RGISGEEVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRI 356
Query: 358 AQLLTV 363
A LT+
Sbjct: 357 AHTLTL 362
>gi|297791325|ref|XP_002863547.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata]
gi|297309382|gb|EFH39806.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata]
Length = 672
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/364 (46%), Positives = 230/364 (63%), Gaps = 14/364 (3%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R+IA +DMDCFY QVE + P L G P AVVQYN W+GGG+IAV+YEAR GV R MRG
Sbjct: 11 ARVIAHVDMDCFYVQVEQRKQPELRGLPTAVVQYNEWQGGGLIAVSYEARKCGVKRSMRG 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
DEAK CP+I+L +VP RGKAD++ YR AG EV+++L++ S ERASIDE Y+DLTD
Sbjct: 71 DEAKAVCPQIQLVQVPVARGKADLNLYRGAGSEVVSILAK-SGKCERASIDEVYLDLTDA 129
Query: 123 VHERMKSIGHIAASQLSNTFVVG---FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
E M + + +L + V+ G D D K V +W+ + +D L
Sbjct: 130 A-ESMLADAPPESLELIDEEVLKSHILGMSREDGDDFKENVRDWICRKDADRREKL---- 184
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
L+ +IV E+R VL +T+F CSAGIAHNK+LAKL G++KP +Q+++P S+V
Sbjct: 185 -----LSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYSAVQ 239
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
L ++L IKK++ LGGKLG + L T+ +L ++S +LQ H+ T +WL+ IARG
Sbjct: 240 ELLSSLPIKKMKQLGGKLGTSLQTDLGIDTVGDLLQYSETKLQEHYGINTGTWLWNIARG 299
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
I E V RL+ KS G K FPG L + V HW+ +L++E+ ERL DL NKR A
Sbjct: 300 ISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLSSDLEQNKRIAS 359
Query: 360 LLTV 363
LT+
Sbjct: 360 TLTL 363
>gi|23953869|gb|AAN39011.1| putative translesion synthesis polymerase RAD30 [Arabidopsis
thaliana]
Length = 672
Score = 318 bits (816), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 168/364 (46%), Positives = 230/364 (63%), Gaps = 14/364 (3%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R+IA +DMDCFY QVE + P L G P AVVQYN W+GGG+IAV+YEAR GV R MRG
Sbjct: 11 ARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEARKCGVKRSMRG 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
DEAK CP+I+L +VP RGKAD++ YR+AG EV+++L++ S ERASIDE Y+DLTD
Sbjct: 71 DEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAK-SGKCERASIDEVYLDLTDA 129
Query: 123 VHERMKSIGHIAASQLSNTFVVG---FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
E M + + +L + V+ G + D D K V W+ + +D L
Sbjct: 130 A-ESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKL---- 184
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
L+ +IV E+R VL +T+ CSAGIAHNK+LAKL G++KP +Q+++P ++V
Sbjct: 185 -----LSCGIIIVAELRKQVLKETELTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQ 239
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
L ++L IKK++ LGGKLG + L T+ +L +FS +LQ H+ T +WL+ IARG
Sbjct: 240 ELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARG 299
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
I E V RL+ KS G K FPG L + V HW+ +L++E+ ERL DL NKR A
Sbjct: 300 ISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIAS 359
Query: 360 LLTV 363
LT+
Sbjct: 360 TLTL 363
>gi|194377454|dbj|BAG57675.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 316 bits (810), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 172/382 (45%), Positives = 237/382 (62%), Gaps = 18/382 (4%)
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M D+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DL
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDL 59
Query: 120 TDVVHERMKSI-GH-IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSD 170
T V ER++ + G I+A L +T++ G GP +E RK G+ +WL + D
Sbjct: 60 TSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQID 119
Query: 171 TDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ 230
TS D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q
Sbjct: 120 NLTS-----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQ 173
Query: 231 SILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+++ SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK
Sbjct: 174 TLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNG 233
Query: 291 SWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
SWLY + RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D
Sbjct: 234 SWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKD 293
Query: 351 LTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
N R A L VS + D +++S R AL Y + + VI N++ ++
Sbjct: 294 RNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEW 353
Query: 411 TPPLLFLGLSASKFSPLGSHPS 432
+PPL L L A+KFS S PS
Sbjct: 354 SPPLTMLFLCATKFS--ASAPS 373
Score = 46.2 bits (108), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKS 1005
+A ++ C+KC + + ++ EH DYHFALEL + P+S SN S + ++
Sbjct: 565 LAAEDQVPCEKCGSLVPVWDMPEHMDYHFALELQKSFLQPHS----SNPQVVSAVSHQ-- 618
Query: 1006 SKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
KR S L + ++T++ FFKP
Sbjct: 619 GKRNPKSPLACTNKRPRPEGMQTLESFFKP 648
>gi|397526775|ref|XP_003833292.1| PREDICTED: DNA polymerase eta [Pan paniscus]
Length = 651
Score = 316 bits (810), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 172/382 (45%), Positives = 237/382 (62%), Gaps = 18/382 (4%)
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M D+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DL
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDL 59
Query: 120 TDVVHERMKSI-GH-IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSD 170
T V ER++ + G I+A L +T++ G GP +E RK G+ +WL + D
Sbjct: 60 TSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQID 119
Query: 171 TDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ 230
TS D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q
Sbjct: 120 NLTS-----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQ 173
Query: 231 SILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+++ SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK
Sbjct: 174 TLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNG 233
Query: 291 SWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
SWLY + RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D
Sbjct: 234 SWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKD 293
Query: 351 LTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
N R A L VS + D +++S R AL Y + + VI N++ ++
Sbjct: 294 RNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEW 353
Query: 411 TPPLLFLGLSASKFSPLGSHPS 432
+PPL L L A+KFS S PS
Sbjct: 354 SPPLTMLFLCATKFS--ASAPS 373
Score = 46.2 bits (108), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKS 1005
+A ++ C+KC + + ++ EH DYHFALEL + P+S SN S + ++
Sbjct: 565 LAAEDQVPCEKCGSLVPVWDMPEHMDYHFALELQKSFLQPHS----SNPQVVSAVSHQ-- 618
Query: 1006 SKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
KR S L + ++T++ FFKP
Sbjct: 619 GKRNPKSPLACTNKRPRPEGMQTLESFFKP 648
>gi|403261356|ref|XP_003923089.1| PREDICTED: DNA polymerase eta isoform 3 [Saimiri boliviensis
boliviensis]
Length = 648
Score = 316 bits (809), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 170/382 (44%), Positives = 236/382 (61%), Gaps = 18/382 (4%)
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M D+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DL
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDL 59
Query: 120 TDVVHERMKSIGH--IAASQLSNTFVVGF--GPDNNDE-----DARKAGVMEWLGQVYSD 170
T V ER++ + I+A L +T++ G GP +E RK G+ +WL + +D
Sbjct: 60 TSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETIQKEGMRKQGLFQWLDSLQTD 119
Query: 171 TDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ 230
TS D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q
Sbjct: 120 NLTS-----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQ 173
Query: 231 SILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+++ SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK
Sbjct: 174 TLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNG 233
Query: 291 SWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
SWLY + RGI+H+PV R + K+IGC K FPGKT L TR+ V W+ +LA E+ ERL D
Sbjct: 234 SWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKD 293
Query: 351 LTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
N R A L VS + D +++S R AL Y + + VI N++ ++
Sbjct: 294 RNDNDRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKNYNTSGIQTEW 353
Query: 411 TPPLLFLGLSASKFSPLGSHPS 432
+PPL L L A+KFS S PS
Sbjct: 354 SPPLTMLFLCATKFS--ASAPS 373
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 18/96 (18%)
Query: 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTTS-EPPNSTSNISNSSSSSKILNKK 1004
+A ++ C+KC + + E+ EH DYHFALEL + +P +S + ++ S N K
Sbjct: 562 LAAEDQVSCEKCGSLVPVWEMPEHMDYHFALELQKSFLQPHSSNPQVVSAVSPQGKRNPK 621
Query: 1005 S-----SKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
S +KR RP + ++T++ FFKP
Sbjct: 622 SPLACNNKRPRP------------EGMQTLESFFKP 645
>gi|241830533|ref|XP_002414817.1| DNA polymerase eta, putative [Ixodes scapularis]
gi|215509029|gb|EEC18482.1| DNA polymerase eta, putative [Ixodes scapularis]
Length = 727
Score = 316 bits (809), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 188/453 (41%), Positives = 258/453 (56%), Gaps = 80/453 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I+L+DMDCFY QVE +L P GKP AV QYNT++GGG+IAVNYEAR GV R MRG+
Sbjct: 8 RVISLVDMDCFYVQVEQRLAPEWKGKPCAVAQYNTFQGGGLIAVNYEARALGVKRGMRGE 67
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A + ++ L RVP RGKAD+++YR+AG EV++VL +F +V+RASIDEAY+DLT VV
Sbjct: 68 QALKLAKDLHLFRVPEQRGKADLTRYRDAGAEVLSVLCQFGAVVQRASIDEAYLDLTPVV 127
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ + L +T VVG+ P+ +R+ V EWL +++++
Sbjct: 128 TAQAT---FPSPDSLPSTHVVGY-PEERGVRSREEAVAEWL--------STIVDPGGGDS 175
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK---------------------------- 215
LA +VE IRAAVL +T F CSAG+AHNK
Sbjct: 176 LLARGCALVERIRAAVLEQTGFDCSAGVAHNKVLAKLVCGLHKPRQQTVLPHSAVPTLFA 235
Query: 216 ---VLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLE 272
VLAKLVCGLHKP++Q++LP S+V L+A L + K+R+LGGKLG++V E LQ S
Sbjct: 236 TLPVLAKLVCGLHKPRQQTVLPHSAVPTLFATLPVHKLRNLGGKLGEDVREKLQVSQ--- 292
Query: 273 LEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDV 332
+ L S F +T WLY +ARG+D EPV R + +SIGC K F G + L +
Sbjct: 293 -DYLCL----SVFGHRTGQWLYKLARGVDDEPVTCRKLPQSIGCGKNFTGSSALHS---- 343
Query: 333 SHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVE 392
AD+ N R AQLLTV T+ G + SRS + +Y I +
Sbjct: 344 -------ADK-----------NDRTAQLLTVGVTRS--GHQGAISRSCPMVAYCATRIAQ 383
Query: 393 VSMQVINKTNSAPPISDL-TPPLLFLGLSASKF 424
++ V+ K N+ +D TP L + LSA++F
Sbjct: 384 DALAVLAKLNT----TDFWTPALTNISLSATRF 412
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 12/101 (11%)
Query: 935 ADSSTVDSAINIADPTKII-CDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISN 993
D ++ D ++ DP+ + C++C + + + ++QEH+DYH A +LS P ST + +
Sbjct: 638 GDCNSGDGSVVNLDPSLVQKCERCGKAVPVWKVQEHEDYHLAQDLSK----PESTLPLPS 693
Query: 994 SSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFFK 1034
+S+S + K S+ RG K + +K+KT+ FF+
Sbjct: 694 ASASKR---KASASRGSKHK----RKKARPEKVKTLKDFFR 727
>gi|356528144|ref|XP_003532665.1| PREDICTED: DNA polymerase eta-like [Glycine max]
Length = 703
Score = 315 bits (808), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 172/369 (46%), Positives = 231/369 (62%), Gaps = 24/369 (6%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+IA +DMDCFY QVE + P+L G P AV+QYN++KGG +IAV+YEAR GV R MRG
Sbjct: 11 GRVIAHVDMDCFYVQVEQRKQPNLRGLPSAVIQYNSYKGGALIAVSYEARRCGVKRSMRG 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
DEAK+ CP+I+L +VP RGKAD++ YRNAG EV++VLS+ ERASIDE Y+DLT
Sbjct: 71 DEAKEACPQIQLVQVPVARGKADLNSYRNAGSEVVSVLSQKGR-CERASIDEVYLDLTHA 129
Query: 123 VHERMKSIGHIAASQLSN----TFVVGF----GPDNNDEDARKAGVMEWLGQVYSDTDTS 174
+ + + + V+G G D DE V +WL + +D S
Sbjct: 130 AETMLMETPLDSMQDFEDEVLKSHVLGLEIKDGSDAKDE------VRKWLCR----SDAS 179
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
+ LA +IV ++R VL +T+F CSAGIAHNK+LAKL ++KP +Q+++P
Sbjct: 180 YQDKL-----LACGALIVCDLRMKVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVP 234
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
QSSV L A+L IKK++HLGGKLG + L +T+ +L +FS ++LQ + T +WL+
Sbjct: 235 QSSVEGLLASLPIKKMKHLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQQWYGINTGTWLW 294
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
IARGI E V RL+ KS G K FPG L T V HW+ +L +E+ ERL DL N
Sbjct: 295 NIARGISGEEVEGRLLPKSHGSGKTFPGPQALKTVDSVQHWLNQLCEELNERLHSDLDQN 354
Query: 355 KRRAQLLTV 363
KR AQ LT+
Sbjct: 355 KRIAQTLTL 363
>gi|358348538|ref|XP_003638302.1| DNA polymerase eta [Medicago truncatula]
gi|355504237|gb|AES85440.1| DNA polymerase eta [Medicago truncatula]
Length = 543
Score = 315 bits (808), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 191/452 (42%), Positives = 261/452 (57%), Gaps = 30/452 (6%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+IA +DMDCFY QVE + PSL G P AVVQYN++KGGG+IAV+YEAR GV R MRG
Sbjct: 11 GRVIAHVDMDCFYVQVEQRKQPSLRGLPTAVVQYNSYKGGGLIAVSYEARKSGVKRSMRG 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD- 121
DEAK+ CP+I+L +VP RGKA+++ YRNAG EV+++LS ERASIDE Y+DLTD
Sbjct: 71 DEAKEACPQIQLVQVPVARGKANLNTYRNAGSEVVSILSRKGR-CERASIDEVYLDLTDA 129
Query: 122 ---VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
++ E ++ + V+G D D K V +W+ + +D S E
Sbjct: 130 AQTMLMETPPECVEHVEEEVLKSHVLGL--QIKDGDDAKEEVRKWICR----SDASYQEK 183
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
LA IV E+R VL +T+F CSAGIAHNK+LAKL ++KP +Q+++P SSV
Sbjct: 184 L-----LACGAFIVAELRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPHSSV 238
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
L + IKK++ LGGKLG + L +T+ +L +FS ++LQ + T +WL+ IAR
Sbjct: 239 EGLLESFPIKKMKQLGGKLGTSLQSDLGINTVGDLLQFSEEKLQQRYGINTGTWLWNIAR 298
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
GI E V RL+ KS G K FPG L T V HW+ EL +E+ ERL+ D+ NKR A
Sbjct: 299 GISGEEVEGRLLPKSHGSGKTFPGPQALKTIASVQHWLNELGEELSERLDSDMDQNKRIA 358
Query: 359 QLLTVSFTQETDG------KVNSCSRSIALASYKLQDIVEVSMQ-----VINKTNSAPPI 407
LT+ G K S S + + K+Q+ Q + NS
Sbjct: 359 HTLTLHARAYKKGDSDSHKKFPSKSCPLRYGTTKIQEDALTLFQSGLRDFLGLYNSKTNG 418
Query: 408 SDLTPPLLFLGLSASKFSPL--GSHPSIQQFF 437
S+ + L +SASK P+ G+H SI ++F
Sbjct: 419 SENKWGITALSVSASKIVPIPSGTH-SITKYF 449
>gi|145281849|gb|ABP49609.1| translesion synthesis DNA polymerase eta splice variant
[Arabidopsis thaliana]
Length = 442
Score = 314 bits (805), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/364 (46%), Positives = 231/364 (63%), Gaps = 14/364 (3%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R+IA +DMDCFY QVE + P L G P AVVQYN W+GGG+IAV+YEAR GV R MRG
Sbjct: 11 ARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEARKCGVKRSMRG 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
DEAK CP+I+L +VP RGKAD++ YR+AG EV+++L++ S ERASIDE Y+DLTD
Sbjct: 71 DEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAK-SGKCERASIDEVYLDLTDA 129
Query: 123 VHERMKSIGHIAASQLSNTFVVG---FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
E M + + +L + V+ G + D D K V W+ + +D L
Sbjct: 130 A-ESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKL---- 184
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
L+ +IV E+R VL +T+F CSAGIAHNK+LAKL G++KP +Q+++P ++V
Sbjct: 185 -----LSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQ 239
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
L ++L IKK++ LGGKLG + L T+ +L +FS +LQ H+ T +WL+ IARG
Sbjct: 240 ELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARG 299
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
I E V RL+ KS G K FPG L + V HW+ +L++E+ ERL DL NKR A
Sbjct: 300 ISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIAS 359
Query: 360 LLTV 363
LT+
Sbjct: 360 TLTL 363
>gi|168033798|ref|XP_001769401.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679321|gb|EDQ65770.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 446
Score = 314 bits (805), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/364 (45%), Positives = 236/364 (64%), Gaps = 19/364 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R+IA +D+DCFY QVE + P L GKP+AVVQ+N WKGGG+IAV+YEAR GV R MRG
Sbjct: 11 TRVIAHLDLDCFYVQVEQRKRPELRGKPVAVVQFNPWKGGGLIAVSYEARKCGVLRCMRG 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
D+AK+ CP+IEL +VP+ G A+++ YR+AG EV+ VLS I ERASIDE Y+D+T+
Sbjct: 71 DDAKKMCPDIELVQVPTAHGHANVNYYRDAGTEVVEVLSR-GGICERASIDEVYLDITEA 129
Query: 123 VHERM----KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
R+ S+G ++ + T ++G + + E+A AG EWL Q +L
Sbjct: 130 AAARLIKGLPSLGTLS-EEARKTHILGL--EEDGENAMTAG--EWLCQSNVPRCDAL--- 181
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
LA +IV E+RAAVL++TQF CSAGI HNK+LAKL +HKP +Q+++P S V
Sbjct: 182 ------LACGALIVAELRAAVLAETQFTCSAGIGHNKMLAKLTSSMHKPAQQTLIPSSYV 235
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
L A + +KK+ HLGGKLG + E L T +L +FS +LQ + T +WL+ +AR
Sbjct: 236 PTLLATIPLKKIGHLGGKLGKSLTEDLGVKTPGDLIQFSKLKLQELYGVNTGNWLWDVAR 295
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
G + + V A+++ KSI C K F G+T L V +W+ E+ DE+ E+L+ DL ++ R+A
Sbjct: 296 GKNGDEVKAKVLPKSISCGKTFAGRTALTNMTSVMYWLGEMCDELQEKLDIDLEVHNRKA 355
Query: 359 QLLT 362
+LL
Sbjct: 356 KLLV 359
>gi|221045690|dbj|BAH14522.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/382 (44%), Positives = 235/382 (61%), Gaps = 18/382 (4%)
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M D+AK+ CP++ L +V RGKA+++KYR A EV+ ++S + ++ERASIDEAY+DL
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRLA-VIERASIDEAYVDL 59
Query: 120 TDVVHERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSD 170
T V ER++ + I+A L +T++ G GP +E RK G+ +WL + D
Sbjct: 60 TSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQID 119
Query: 171 TDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ 230
TS D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q
Sbjct: 120 NLTS-----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQ 173
Query: 231 SILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+++ SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK
Sbjct: 174 TLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNG 233
Query: 291 SWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
SWLY + RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D
Sbjct: 234 SWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKD 293
Query: 351 LTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
N R A L VS + D +++S R AL Y + + VI N++ ++
Sbjct: 294 RNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEW 353
Query: 411 TPPLLFLGLSASKFSPLGSHPS 432
+PPL L L A+KFS S PS
Sbjct: 354 SPPLTMLFLCATKFS--ASAPS 373
Score = 46.2 bits (108), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKS 1005
+A ++ C+KC + + ++ EH DYHFALEL + P+S SN S + ++
Sbjct: 565 LAAEDQVPCEKCGSLVPVWDMPEHMDYHFALELQKSFLQPHS----SNPQVVSAVSHQ-- 618
Query: 1006 SKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
KR S L + ++T++ FFKP
Sbjct: 619 GKRNPKSPLACTNKRPRPEGMQTLESFFKP 648
>gi|2660675|gb|AAC79146.1| similar to DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|9758378|dbj|BAB08827.1| DNA-damage-inducible protein P [Arabidopsis thaliana]
Length = 689
Score = 311 bits (798), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 169/376 (44%), Positives = 231/376 (61%), Gaps = 26/376 (6%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R+IA +DMDCFY QVE + P L G P AVVQYN W+GGG+IAV+YEAR GV R MRG
Sbjct: 11 ARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEARKCGVKRSMRG 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREV------------IAVLSEFSNIVERA 110
DEAK CP+I+L +VP RGKAD++ YR+AG EV +++L++ S ERA
Sbjct: 71 DEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVDGSGSYYYTVCVVSILAK-SGKCERA 129
Query: 111 SIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVG---FGPDNNDEDARKAGVMEWLGQV 167
SIDE Y+DLTD E M + + +L + V+ G + D D K V W+ +
Sbjct: 130 SIDEVYLDLTDAA-ESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICRE 188
Query: 168 YSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKP 227
+D L L+ +IV E+R VL +T+F CSAGIAHNK+LAKL G++KP
Sbjct: 189 DADRRDKL---------LSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKP 239
Query: 228 QKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEE 287
+Q+++P ++V L ++L IKK++ LGGKLG + L T+ +L +FS +LQ H+
Sbjct: 240 AQQTVVPYAAVQELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGV 299
Query: 288 KTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
T +WL+ IARGI E V RL+ KS G K FPG L + V HW+ +L++E+ ERL
Sbjct: 300 NTGTWLWNIARGISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERL 359
Query: 348 EDDLTLNKRRAQLLTV 363
DL NKR A LT+
Sbjct: 360 GSDLEQNKRIASTLTL 375
>gi|339234771|ref|XP_003378940.1| DNA polymerase eta [Trichinella spiralis]
gi|316978474|gb|EFV61459.1| DNA polymerase eta [Trichinella spiralis]
Length = 633
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 197/450 (43%), Positives = 262/450 (58%), Gaps = 39/450 (8%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCP 70
MDCFY QVE + P L GKP+AVVQYN W+GGGIIAV+YEARH V R MRG +A CP
Sbjct: 1 MDCFYVQVEQRNKPELWGKPVAVVQYNEWRGGGIIAVDYEARHYNVKRGMRGQDALAVCP 60
Query: 71 EIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER---M 127
EI L +VP+ RGKAD++KYR A EV VLS +VERASIDEAY+DLT +V + M
Sbjct: 61 EIHLIQVPTQRGKADLTKYRKASEEVFHVLSLCDAVVERASIDEAYLDLTAIVKKELLDM 120
Query: 128 KSIG-HIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLM------ENTE 180
++ G +IA L +T + A K +E + + S + SLM EN E
Sbjct: 121 RTEGRYIAEDALKDTHL-----------AVKHDSIENIEALISLAN-SLMRNDIIDENAE 168
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
I V+V IR + KT F+CSAGIA NK+LAKL CGL+KP++Q+I+ SSV+
Sbjct: 169 GIVLHVIGAVLVNRIRKQIFEKTNFYCSAGIAVNKMLAKLACGLNKPKQQTIVLPSSVAE 228
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKT---ASWLYYIA 297
++ + I+KVR+LGGKLG ++ + + TM EL + L+ EKT +WL +
Sbjct: 229 FFSTVPIRKVRNLGGKLGYKITKHFEIETMRELANLNPSLLEKFVGEKTKLVLNWLLELC 288
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRR 357
GID +PV R + KSIGC K FPG+ L + DV HW ++L++E+ ER LN R
Sbjct: 289 CGIDRDPVVIRQLPKSIGCSKNFPGRNALRSVNDVRHWTRQLSEELEER------LNCRI 342
Query: 358 AQLLTVSF-TQETDGKVNSC--SRSIALASYKLQDIVEVSMQVINK--TNSAPPIS-DLT 411
A+ LTV T+E +C SR L Y + I + + +I + TNSA S L
Sbjct: 343 AKSLTVGIRTEEKPENEANCHSSRQTFLRDYSAEVISQDAFGLIQEFNTNSAKQSSIWLK 402
Query: 412 PPLLFLGLSASKFSPLGSHPS--IQQFFKP 439
P + L +SAS+F S I FFKP
Sbjct: 403 PAITMLSMSASRFEDSVDLDSKLITDFFKP 432
>gi|449526991|ref|XP_004170496.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus]
Length = 557
Score = 309 bits (792), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 171/368 (46%), Positives = 222/368 (60%), Gaps = 18/368 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RIIA +DMDCFY QVE + P L G P AVVQYN+WKGGG+IAV YEAR GV R MRGD
Sbjct: 12 RIIAHVDMDCFYVQVEQRKQPCLRGLPTAVVQYNSWKGGGLIAVGYEARKFGVKRSMRGD 71
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP+I+L +VP RGKAD+ YR+AG EV+ VLS+ ERASIDE Y+DLTD
Sbjct: 72 EAKKVCPQIQLIQVPVARGKADLKTYRDAGSEVVRVLSKKGR-CERASIDEVYLDLTDAA 130
Query: 124 HERM-----KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
+ +S+ I L + G D ++ + V +WL + SD L
Sbjct: 131 EAMLVETPPESMEAIDVEALKSHV---LGLDQEEQSDGQECVRKWLTKCDSDYRDKL--- 184
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
LA +IV E+R VL +T+F CSAGIAHNK+LAKL ++KP +Q+++P S V
Sbjct: 185 ------LACGTLIVAELRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPLSCV 238
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
L +L IKK++ LGGKLG + L +T+ +L KF ++LQ + T +WL+ IAR
Sbjct: 239 KGLLDSLPIKKMKQLGGKLGSSLESDLGVNTVGDLLKFPEQKLQERYGINTGTWLWNIAR 298
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
G E V RL+ S G K FPG L T V HW+ EL++E+ ERL DL N+R A
Sbjct: 299 GSSGEEVQCRLLPNSHGSGKSFPGPQALRTIASVQHWLTELSEELSERLSSDLDQNRRMA 358
Query: 359 QLLTVSFT 366
LT T
Sbjct: 359 HTLTFHAT 366
>gi|302770725|ref|XP_002968781.1| hypothetical protein SELMODRAFT_90560 [Selaginella moellendorffii]
gi|300163286|gb|EFJ29897.1| hypothetical protein SELMODRAFT_90560 [Selaginella moellendorffii]
Length = 444
Score = 306 bits (784), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 227/362 (62%), Gaps = 13/362 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+DCFY QVE + P L GKP AV+QYN+WKGG IAV YEAR GV R MRGD
Sbjct: 12 RVIAHVDLDCFYVQVEQRRQPQLRGKPTAVIQYNSWKGGACIAVGYEARKCGVKRSMRGD 71
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AK CP++ L +VP + KAD+S YR+AG EV+AVLS ERASIDE Y+D+T+
Sbjct: 72 AAKAVCPDLNLVQVPVLHEKADLSIYRDAGSEVVAVLSRVGK-CERASIDEVYLDVTEAA 130
Query: 124 HERM--KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
ER+ K + + + + S + +VG E + K G EW + D S ED
Sbjct: 131 -ERLSSKDLSTLVSEEASTSHIVGLPQVRWLESSAKLGTKEW----FCRPDAS----RED 181
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
LA +I+ +IR AVL++T+F CSAG+AHNK+LAKL G+HKP +Q+++P S+V L
Sbjct: 182 -HLLACGAIIIADIRLAVLAETEFTCSAGVAHNKMLAKLSSGMHKPAQQTLVPSSAVESL 240
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
A L I K+ LGGKLG E+ L T+ +L +FS +LQ + T +WL+ ARGI+
Sbjct: 241 LATLPISKIGKLGGKLGQELEGELGVKTVGDLLQFSELKLQDMYGPNTGTWLWNTARGIN 300
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLL 361
+ V R + KS K FPG L T + V +W++ELA+ + RL++DL+ N R A LL
Sbjct: 301 GDEVQDRTLPKSHSSGKTFPGPRALKTLETVVYWLKELAETLQLRLDEDLSQNNRTAHLL 360
Query: 362 TV 363
T+
Sbjct: 361 TI 362
>gi|344259088|gb|EGW15192.1| DNA polymerase eta [Cricetulus griseus]
Length = 633
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 173/381 (45%), Positives = 237/381 (62%), Gaps = 17/381 (4%)
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M D+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAYIDL
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFA-VIERASIDEAYIDL 59
Query: 120 TDVVHERMKSIGH--IAASQLSNTFVVGF--GPDNND----EDARKAGVMEWLGQVYSDT 171
T V +R++ + I+A L T++ G GP + E+ RK G+++WLG + D
Sbjct: 60 TSAVQDRLEKLQGQPISADLLPTTYIEGLPRGPTVEETVQKEEIRKQGLLQWLGSLQIDD 119
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
TS D Q L + VIVEE+RAA+ KT F CSAGI+HNKVLAKL CGL+KP +Q+
Sbjct: 120 ATS-----PDLQ-LTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQT 173
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
++ SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK S
Sbjct: 174 LVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGS 233
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDL 351
WLY + RGI+H+PV R + KSIGC K FPGKT LATR V W+ +LA E+ ERL D
Sbjct: 234 WLYAMCRGIEHDPVKPRQLPKSIGCSKNFPGKTALATRDQVQWWLLQLALELEERLTKDR 293
Query: 352 TLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLT 411
N R A L VS + D +++S R AL Y + + + I N++ ++ +
Sbjct: 294 NDNDRVATQLAVSIRVQGDKRLSSLRRCCALTQYDAHKMSQDAFAAIRNCNTSGIQTEWS 353
Query: 412 PPLLFLGLSASKFSPLGSHPS 432
PPL L L A+KFS S PS
Sbjct: 354 PPLTMLFLCATKFS--ASAPS 372
Score = 46.2 bits (108), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 951 KIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGR 1010
+++C+KC + + ++ EH DYHFALEL + P ++ + + S + KR
Sbjct: 552 QVLCEKCDSLVPVWDMPEHTDYHFALELQKSFLQPCTSKPQAVPAMSPQ------GKRNP 605
Query: 1011 PSKLNSFKNSENFKKLKTIDQFFKP 1035
S L S ++T++ FFKP
Sbjct: 606 KSPLASSNKRLRIHGMQTLESFFKP 630
>gi|324509837|gb|ADY44123.1| DNA polymerase eta [Ascaris suum]
Length = 602
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 176/436 (40%), Positives = 249/436 (57%), Gaps = 24/436 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRH-MRG 62
R+IALIDMDCFY QVE +L P L GKP+ V QY+ +GGGI+AV+YEAR G+ R M
Sbjct: 7 RVIALIDMDCFYAQVEQRLQPHLWGKPIIVAQYSNIRGGGILAVSYEARPFGIKRFGMFA 66
Query: 63 DEAKQHCPEIELCRVPSVR--GKADISKYRNAGREVIAVLSEFSN--IVERASIDEAYID 118
++AK CPE+ +C VPS KAD+++YRNA EV+ VL+ F + IVERASIDEAY+D
Sbjct: 67 EQAKALCPELTVCYVPSGEHSDKADLTRYRNASAEVLDVLNGFDSRIIVERASIDEAYLD 126
Query: 119 LTDVVHERMKS-IGHIAASQLSNTFVVGFGPDNNDEDA---------RKAGVMEWLGQVY 168
L+++V ++S + S + F + ND A R+A + EW+ +
Sbjct: 127 LSELVDYIVESETPSLKYSCSLDMFPTTHLANGNDIKASNETIWKYDREANLREWIIEAC 186
Query: 169 SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQ 228
+L LA+A IVE IRA + KTQF CSAGI NK++AKL+C HKP
Sbjct: 187 VQQRQAL--------RLAVAAEIVERIRAEIKEKTQFSCSAGIGSNKMIAKLICSRHKPG 238
Query: 229 KQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEK 288
+Q+I+P ++ ++ + I +R+LGGKLG ++ TM EL S++QL HF +
Sbjct: 239 QQTIIPDEFIAEIFRSTRILSIRNLGGKLGHALMNAFSIETMSELCGISMQQLSEHFSAQ 298
Query: 289 TASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
A W+Y IARGID EPV AR SI K FPG + L + +V W+ L E+ +RL
Sbjct: 299 -AKWIYNIARGIDDEPVRARDKQSSIAVSKNFPGSSALTSTSEVQTWLDGLVKELAKRLI 357
Query: 349 DDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPIS 408
DD NKR A L VS T++ + +S + SY + + ++ N++
Sbjct: 358 DDQIKNKRTACTLHVSCTRDALYTGTTLGKSCQIVSYAPDALYNAAWAILRHYNNSATPE 417
Query: 409 DLTPPLLFLGLSASKF 424
P + + LSAS+F
Sbjct: 418 TWDPAIFNISLSASRF 433
>gi|111308137|gb|AAI21715.1| Zgc:136881 [Danio rerio]
Length = 294
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 154/294 (52%), Positives = 201/294 (68%), Gaps = 13/294 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCFY QVE +L P L KP V QY TWKGGGIIAV+YEAR GV R+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRLKPELKNKPCVVAQYKTWKGGGIIAVSYEARAHGVGRNMFAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++++ RVP GKAD++ YR A EVI V+S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DARKLCPDLQVARVPEAHGKADLTHYREASVEVIEVMSRFA-VIERASIDEAYMDLTASV 125
Query: 124 HERMK--SIGHIAASQLSNTFVVGFGPDNN----DEDA-RKAGVMEWLGQVYSDTDTSLM 176
ER+K S+ I A QL NT + GF D DA R AG+ +WL + S T++S
Sbjct: 126 QERLKNTSVQDITAQQLKNTHIQGFPTQQENTHLDRDAQRAAGLQQWLDLLSSSTESS-- 183
Query: 177 ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
D + LA+ +IVE++RAAV T F CSAGI+HNKVLAKL CGL+KP +Q++LP S
Sbjct: 184 --PADLR-LAVGALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLS 240
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTA 290
SV L++ L I K+R+LGGKLG + ETL M +L +FS QL+ HF +KT
Sbjct: 241 SVPQLFSTLPISKIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTG 294
>gi|302822456|ref|XP_002992886.1| hypothetical protein SELMODRAFT_136073 [Selaginella moellendorffii]
gi|300139334|gb|EFJ06077.1| hypothetical protein SELMODRAFT_136073 [Selaginella moellendorffii]
Length = 436
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 174/406 (42%), Positives = 244/406 (60%), Gaps = 30/406 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+DCFY QVE + P L GKP AV+QYN+WKGG IAV YEAR GV R MRGD
Sbjct: 12 RVIAHVDLDCFYVQVEQRRQPQLRGKPTAVIQYNSWKGGACIAVGYEARKCGVKRSMRGD 71
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AK CP++ L +VP + KAD+S YR+AG EV+AVLS ERASIDE Y+D+T+
Sbjct: 72 AAKAVCPDLNLVQVPVLHEKADLSIYRDAGSEVVAVLSRVGK-CERASIDEVYLDVTEAA 130
Query: 124 HERM--KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+R+ K + + + + S + +VG ++ G EW + D S ED
Sbjct: 131 -KRLSSKDLSTLVSEEASTSHIVGL--------PQELGTKEW----FCRPDAS----RED 173
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
LA +IV +IR AVL++T+F CSAG+AHNK+LAKL G+HKP +Q+++P S+V L
Sbjct: 174 -HLLACGAIIVADIRLAVLAETEFTCSAGVAHNKMLAKLSSGMHKPAQQTLVPSSAVESL 232
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
A L I K+ LGGKLG E+ L T+ +L +FS +LQ + T +WL+ ARGI+
Sbjct: 233 LATLPISKIGKLGGKLGQELEGELGVKTVGDLLQFSEVKLQDMYGPNTGTWLWNTARGIN 292
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLL 361
+ V R + KS K FPG L T + V +W++ELA+ + RL++DL+ N R A LL
Sbjct: 293 GDEVQDRTLPKSHSSGKTFPGPRALKTLETVVYWLKELAETLQLRLDEDLSQNNRTAHLL 352
Query: 362 TVSFTQETDG------KVNSCSRSIALASYKLQDIVEVSMQVINKT 401
T+ + +G K +S SR + Y + IVE S + ++
Sbjct: 353 TIHASCHIEGRATEAPKFSSKSRPL---RYGVDKIVEDSRYLFERS 395
>gi|222619273|gb|EEE55405.1| hypothetical protein OsJ_03511 [Oryza sativa Japonica Group]
Length = 621
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 184/457 (40%), Positives = 256/457 (56%), Gaps = 41/457 (8%)
Query: 18 VECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRV 77
VE + NP L G+P AVVQYN WKGGG+IAV+YEAR GV R MRGDEAK CP I L +V
Sbjct: 13 VEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEARKFGVKRSMRGDEAKMVCPSINLVQV 72
Query: 78 PSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM----KSIGHI 133
P R KAD++ YR+AG EV+ +LS ERASIDE Y+DLTD E + + +
Sbjct: 73 PVARDKADLNVYRSAGSEVVTILSTKGK-CERASIDEVYLDLTDAAKEMLLESPPELLEL 131
Query: 134 AASQLSNTFVVGFGPD-NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIV 192
+ + + ++G D +N ED+ +A WL + +D L L+ +IV
Sbjct: 132 IFEEATKSNILGLPSDVSNREDSVRA----WLCRADADYQDKL---------LSCGAIIV 178
Query: 193 EEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRH 252
++R VL +TQF CSAGIAHNK+LAKLV G+HKP +Q+++P S+V +L IKK++
Sbjct: 179 AQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKKMKQ 238
Query: 253 LGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSK 312
LGGKLG + + L +T+ +L F+ +LQ ++ T +WL+ IARGI E V RL+ K
Sbjct: 239 LGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLPK 298
Query: 313 SIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGK 372
S GC K FPG L V W+ L +E+ ER++ DL NKR AQ LT+ K
Sbjct: 299 SHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTLYARACKKNK 358
Query: 373 VNSC----SRSIALASYKLQDIVEVSMQV--------INKTNSAPPISDLTPPLLFLGLS 420
+S S+S L Y I E +M++ + N+ I+ L+ +S
Sbjct: 359 SDSIKKFPSKSCPL-RYGTVKIQEDAMKLFESGLHDFLGSQNTKWSITSLS-------VS 410
Query: 421 ASKFS--PLGSHPSIQQFFKPQDHPEPMTSEHSSLPE 455
ASK P+G+ ++ P P + SSLPE
Sbjct: 411 ASKIFDIPIGTSSILRYIKGPNSTVSPANLDCSSLPE 447
>gi|449434198|ref|XP_004134883.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus]
Length = 506
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 166/361 (45%), Positives = 216/361 (59%), Gaps = 18/361 (4%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCP 70
MDCFY QVE + P L G P AVVQYN+WKGGG+IAV YEAR GV R MRGDEAK+ CP
Sbjct: 24 MDCFYVQVEQRKQPCLRGLPTAVVQYNSWKGGGLIAVGYEARKFGVKRSMRGDEAKKVCP 83
Query: 71 EIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM--- 127
+I+L +VP RGKAD+ YR+AG EV+ VLS+ ERASIDE Y+DLTD +
Sbjct: 84 QIQLIQVPVARGKADLKTYRDAGSEVVRVLSKKGR-CERASIDEVYLDLTDAAEAMLVET 142
Query: 128 --KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQEL 185
+S+ I L + G D ++ + V +WL + SD L L
Sbjct: 143 PPESMEAIDVEALKSHV---LGLDQEEQSDGQECVRKWLTKCDSDYRDKL---------L 190
Query: 186 AIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANL 245
A +IV E+R VL +T+F CSAGIAHNK+LAKL ++KP +Q+++P S V L +L
Sbjct: 191 ACGTLIVAELRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPLSCVKGLLDSL 250
Query: 246 SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPV 305
IKK++ LGGKLG + L +T+ +L KF ++LQ + T +WL+ IARG E V
Sbjct: 251 PIKKMKQLGGKLGSSLESDLGVNTVGDLLKFPEQKLQERYGINTGTWLWNIARGSSGEEV 310
Query: 306 NARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSF 365
RL+ S G K FPG L T V HW+ EL++E+ ERL DL N+R A LT
Sbjct: 311 QCRLLPNSHGSGKSFPGPQALRTIASVQHWLTELSEELSERLSSDLDQNRRMAHTLTFHA 370
Query: 366 T 366
T
Sbjct: 371 T 371
>gi|291244467|ref|XP_002742117.1| PREDICTED: DNA-directed DNA polymerase eta-like, partial
[Saccoglossus kowalevskii]
Length = 289
Score = 292 bits (747), Expect = 7e-76, Method: Composition-based stats.
Identities = 155/297 (52%), Positives = 202/297 (68%), Gaps = 20/297 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRH-MRG 62
R+IAL+DMDCFY QVE +L P GKP VVQYN WKGGGIIAV YEAR KGV R MR
Sbjct: 3 RVIALVDMDCFYVQVEQRLLPETRGKPCIVVQYNHWKGGGIIAVGYEARAKGVRRGGMRA 62
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
DEAK+ CP+I + RVP RGKA++S+YR+A EV+ VL FS VERAS+DEAYIDLTD
Sbjct: 63 DEAKELCPDIHVFRVPEKRGKANLSRYRDACVEVMEVLCTFSKCVERASVDEAYIDLTDE 122
Query: 123 VHERMKSIGHIAAS--QLSNTFVVGF-GPDNNDE------DARKAGVMEWLGQVYSDTDT 173
+ ++M+ IG + S L NTFVVG+ G +NND +++ +GV +WL +S
Sbjct: 123 IDKKMEEIGDVDVSIDMLPNTFVVGWDGKENNDPNEEPPLESQTSGVFQWLNNCHSI--- 179
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
+ + LAI VIVEE+R AV KT+F CSAG++HNK+LAKL CG++KP KQ++L
Sbjct: 180 -------EHKRLAIGAVIVEEMRKAVYQKTEFRCSAGVSHNKILAKLACGINKPNKQTVL 232
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTA 290
P SV L+ + + KVRHLGGKLG ++ + L M ++ KF+ K+LQ +KT
Sbjct: 233 PFESVEKLFKLIPVNKVRHLGGKLGQQLQDELGMQYMGDICKFTEKELQIKLGDKTG 289
>gi|193783756|dbj|BAG53738.1| unnamed protein product [Homo sapiens]
Length = 617
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 158/354 (44%), Positives = 216/354 (61%), Gaps = 18/354 (5%)
Query: 88 KYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVG 145
+YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 7 RYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEG 65
Query: 146 F--GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 198
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA
Sbjct: 66 LPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAA 119
Query: 199 VLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLG 258
+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++ SV L++ + I+K+R LGGKLG
Sbjct: 120 IERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLG 179
Query: 259 DEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCK 318
V+E L M EL +F+ QLQSHF EK SWLY + RGI+H+PV R + K+IGC K
Sbjct: 180 ASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSK 239
Query: 319 RFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSR 378
FPGKT LATR+ V W+ +LA E+ ERL D N R A L VS + D +++S R
Sbjct: 240 NFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRR 299
Query: 379 SIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPLGSHPS 432
AL Y + + VI N++ ++ +PPL L L A+KFS S PS
Sbjct: 300 CCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPLTMLFLCATKFS--ASAPS 351
Score = 41.6 bits (96), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTTS-EPPNSTSNISNSSSSSKILNKK 1004
+A ++ C+KC + + +L EH DYHFALEL + +P +S + ++ S N K
Sbjct: 543 LAAEDQVPCEKCGSLVPVWDLPEHMDYHFALELQKSFLQPHSSNPQVVSAVSHQGKRNPK 602
Query: 1005 S-----SKRGRPSKL 1014
S +KR RP +
Sbjct: 603 SPLACTNKRPRPEGM 617
>gi|449675574|ref|XP_004208438.1| PREDICTED: DNA polymerase eta-like, partial [Hydra magnipapillata]
Length = 333
Score = 285 bits (730), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 149/338 (44%), Positives = 211/338 (62%), Gaps = 20/338 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R++ L+DMDCFY QV + NP L GKP AVVQYN WKGGGIIAV YEAR GVTR MRG
Sbjct: 7 NRVVLLVDMDCFYVQVVQRKNPELVGKPCAVVQYNAWKGGGIIAVGYEARKFGVTRQMRG 66
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
DEAK+ CP+I L VP RGKAD++++R AG EVI +L+ F++ +ERAS+DEAY+DLT++
Sbjct: 67 DEAKEKCPDIHLVPVPENRGKADLTQFREAGAEVIEILAGFADCLERASVDEAYMDLTEL 126
Query: 123 VHERM--KSIGHIAASQLSNTFVVGFGPDN------NDEDARKAGVM-EWLGQVYSDTDT 173
++ I +A NT +VG DN + +D K + +W
Sbjct: 127 INRDFCNYDIEEVALHTFQNTNIVGI--DNMVTGLTDTQDILKCDLYKQW---------H 175
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
++ +E+ +LAI I +++R V K F CSAGI NK+LAK+V G HKP +Q+++
Sbjct: 176 EVLHRSEENLKLAIGATIADKMRKEVKEKLGFTCSAGIGQNKMLAKIVAGFHKPDQQTLV 235
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
+V+ ++ + ++K+R LGGKLG ++ ET M +L K S L+ +K+ +
Sbjct: 236 LPDNVAEMFQSTKMRKIRSLGGKLGKQLAETFNVEYMSDLLKISSHDLEKVIGKKSGDLV 295
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQD 331
Y + RGID+EPV R + KS+GC K F GK L+T D
Sbjct: 296 YGLCRGIDYEPVRPRQLPKSVGCSKNFNGKLTLSTTAD 333
>gi|125527765|gb|EAY75879.1| hypothetical protein OsI_03798 [Oryza sativa Indica Group]
Length = 498
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 205/351 (58%), Gaps = 38/351 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +DMDCFY QVE + NP L G+P AVVQYN WKGGG+IAV+YEAR GV R MRGD
Sbjct: 12 RVIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEARKFGVKRSMRGD 71
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK CP I L +VP R KAD++ YR+AG EV+A+LS ERASIDE Y+DLTD
Sbjct: 72 EAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVAILSTKGK-CERASIDEVYLDLTDAA 130
Query: 124 HER--------MKSIGHIAASQ-----------LSNTFVVGFGPDNN---------DEDA 155
E ++ I A L + VV D N D
Sbjct: 131 KEMLLESPPELLELIFEEATKSNILGLPSVIFVLHDLIVVSLQFDMNVTNRASYVQDVIN 190
Query: 156 RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 215
R+ V WL + +D L L+ +IV ++R VL +TQF CSAGIAHNK
Sbjct: 191 REDSVRAWLCRADADYQDKL---------LSCGAIIVAQLRVKVLEETQFTCSAGIAHNK 241
Query: 216 VLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEK 275
+LAKLV G+HKP +Q+++P S+V +L IKK++ LGGKLG + + L +T+ +L
Sbjct: 242 MLAKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLS 301
Query: 276 FSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCL 326
F+ +LQ ++ T +WL+ IARGI E V RL+ KS GC K FPG L
Sbjct: 302 FTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLPKSHGCGKTFPGPKAL 352
>gi|312373689|gb|EFR21388.1| hypothetical protein AND_17125 [Anopheles darlingi]
Length = 281
Score = 282 bits (721), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 145/276 (52%), Positives = 186/276 (67%), Gaps = 23/276 (8%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCP 70
MDCFYCQVE KLNP + GKP+AVVQYN W+ AVNY AR KGVTRHMRGDEAKQHCP
Sbjct: 1 MDCFYCQVEEKLNPEIKGKPIAVVQYNPWQ-----AVNYPARGKGVTRHMRGDEAKQHCP 55
Query: 71 EIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 130
EIEL +VP+VRGKAD+++YR AG+EV VL F+ ++ERASIDEAY+D+T+ V R++ +
Sbjct: 56 EIELPQVPNVRGKADLTRYREAGKEVAEVLKSFTPLLERASIDEAYLDITERVLNRIRDM 115
Query: 131 G----HIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ--- 183
+ +L+NTF VG+ D+ + +K L + + TS E +
Sbjct: 116 NEGRFQLLPDKLANTFAVGY--DSIGDFVKK------LSNTFDNNGTSEQGTPEQLEYKK 167
Query: 184 ---ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+L + IV EIRAAV KT + CSAG+AHNK+LAKL G HKP KQ+ILP S++
Sbjct: 168 SDIKLLVGASIVNEIRAAVKEKTGYECSAGVAHNKILAKLTAGFHKPNKQTILPIESIAK 227
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKF 276
LY L +KKV+ LGGKLGD+V E L+ M EL +F
Sbjct: 228 LYETLPVKKVKGLGGKLGDQVCELLKIKFMSELVQF 263
>gi|145281847|gb|ABP49608.1| translesion synthesis DNA polymerase eta splice variant
[Arabidopsis thaliana]
Length = 350
Score = 282 bits (721), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 153/327 (46%), Positives = 208/327 (63%), Gaps = 14/327 (4%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R+IA +DMDCFY QVE + P L G P AVVQYN W+GGG+IAV+YEAR GV R MRG
Sbjct: 11 ARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEARKCGVKRSMRG 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
DEAK CP+I+L +VP RGKAD++ YR+AG EV+++L++ S ERASIDE Y+DLTD
Sbjct: 71 DEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAK-SGKCERASIDEVYLDLTDA 129
Query: 123 VHERMKSIGHIAASQLSNTFVVG---FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
E M + + +L + V+ G + D D K V W+ + +D L
Sbjct: 130 A-ESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKL---- 184
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
L+ +IV E+R VL +T+F CSAGIAHNK+LAKL G++KP +Q+++P ++V
Sbjct: 185 -----LSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQ 239
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
L ++L IKK++ LGGKLG + L T+ +L +FS +LQ H+ T +WL+ IARG
Sbjct: 240 ELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARG 299
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCL 326
I E V RL+ KS G K FPG L
Sbjct: 300 ISGEEVQGRLLPKSHGSGKTFPGPRAL 326
>gi|312079328|ref|XP_003142126.1| hypothetical protein LOAG_06542 [Loa loa]
gi|307762710|gb|EFO21944.1| hypothetical protein LOAG_06542 [Loa loa]
Length = 545
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 171/442 (38%), Positives = 250/442 (56%), Gaps = 37/442 (8%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNT--WKGGGIIAVNYEARHKGVTRHMR 61
RIIALIDMDCFY QVE +L P L+GKP+AVVQ+++ ++GGG++AV+YEAR G+ R M
Sbjct: 5 RIIALIDMDCFYVQVEQRLQPHLYGKPVAVVQHSSANYRGGGLLAVSYEARSFGIKRGMF 64
Query: 62 GDEAKQHCPEIELCRVPSVR--GKADISKYRNAGREVIAVLSEFSN--IVERASIDEAYI 117
G++AK CP++ LC VP KADI++YR+A EV VL EF + +VERAS+DEAY+
Sbjct: 65 GEQAKALCPDLTLCYVPVGEHIDKADITRYRDASAEVFKVLHEFDSRIVVERASVDEAYL 124
Query: 118 DLTDVVHERMK----SIGHIA--ASQLSNTFVVGFGPDNNDEDA------RKAGVMEWLG 165
DL+ +V + S+ ++ A L T V G D N++ R + ++
Sbjct: 125 DLSALVQHIFETTNPSVKYMEPNAVDLFPTTHVADGADLNEDKIPDWKYDRVESLHSFIS 184
Query: 166 QVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLH 225
+ Y D ++ L I ++E+IR+A+ T F+CSAGI +K++AKLVC H
Sbjct: 185 EAYETQDEYKLK-------LIIGADVIEQIRSAIKKNTAFNCSAGIGSSKMIAKLVCSRH 237
Query: 226 KPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHF 285
KP +Q+++ ++ ++ I +VR+LGGKLG +VE TM EL + S+ L F
Sbjct: 238 KPGQQTVVFNEAIPKVFEYTPINEVRNLGGKLGRALVEKFDVKTMGELSQISMSDLSECF 297
Query: 286 EEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCE 345
+ A W+Y IARGID E V AR S+ K FPG L T DV W++ L E+ +
Sbjct: 298 PAQ-AKWIYNIARGIDEEKVTARDKQSSVAVSKNFPGPNALKTDGDVKFWLEGLIKELVK 356
Query: 346 RLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASY---KLQDIVEVSMQVINKTN 402
RL DD N R A L + T +RS+ + +Y L + + + + INK+
Sbjct: 357 RLIDDQITNIRTASTLHIGCTTNV-----HLTRSMQMKTYDPKALFNSIWATFRHINKSK 411
Query: 403 SAPPISDLTPPLLFLGLSASKF 424
P D P + + LSA +F
Sbjct: 412 -IPETWD--PSVKNITLSADRF 430
>gi|255574476|ref|XP_002528150.1| DNA polymerase eta, putative [Ricinus communis]
gi|223532448|gb|EEF34241.1| DNA polymerase eta, putative [Ricinus communis]
Length = 560
Score = 272 bits (696), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 158/365 (43%), Positives = 206/365 (56%), Gaps = 41/365 (11%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRIIA +DMDCFY QVE + P L G P AVVQYN WKGGG+IAV+YEAR GV R MRG
Sbjct: 11 SRIIAHVDMDCFYVQVEQRKQPQLRGLPTAVVQYNEWKGGGLIAVSYEARKFGVKRSMRG 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
DEAK+ CP+I L +VP RGKAD++ YRNAG EV+++L+ ERASIDE Y+DLTD
Sbjct: 71 DEAKEVCPQILLVQVPVARGKADLNVYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDS 129
Query: 123 VHERMKSIG----HIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
+K + ++ + V+G +N ++ K V EWL + +D L
Sbjct: 130 AEAMLKDTPPNSLDVIDDEVLKSHVLGLKNENGND--AKEDVREWLCRNDADHRDKL--- 184
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
LA +IV E+R VL +T+F CSAGIAHNK
Sbjct: 185 ------LACGAIIVAELRMQVLKETEFTCSAGIAHNK----------------------- 215
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
+ N+ + LGGKLG + L T+ +L +FS ++LQ + T +WL+ IAR
Sbjct: 216 --MDCNILFDCRKQLGGKLGSSLQNELGVDTVGDLLQFSEEKLQDRYGINTGTWLWNIAR 273
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
GI+ E V RL+ KS G K FPG L T V HW+ +L +E+ ERL DL NKR A
Sbjct: 274 GINGEEVQGRLLPKSHGSGKSFPGPQALKTIASVQHWLNQLCEELSERLCSDLEQNKRMA 333
Query: 359 QLLTV 363
LT+
Sbjct: 334 HTLTL 338
>gi|297290923|ref|XP_002803805.1| PREDICTED: DNA polymerase eta-like [Macaca mulatta]
Length = 730
Score = 272 bits (695), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 159/393 (40%), Positives = 222/393 (56%), Gaps = 54/393 (13%)
Query: 44 IIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEF 103
IIAV+YEAR GVTR M D+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F
Sbjct: 111 IIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRF 170
Query: 104 SNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDARKAG 159
+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G GP +E +K
Sbjct: 171 A-VIERASIDEAYVDLTSSVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQK-- 227
Query: 160 VMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
V ++L F C +VLAK
Sbjct: 228 VTKFL---------------------------------------HFAC------FQVLAK 242
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLK 279
L CGL+KP +Q+++ SV L++ + I+K+R+LGGKLG V+E L M EL +F+
Sbjct: 243 LACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTES 302
Query: 280 QLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQEL 339
QLQSHF EK SWLY + RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +L
Sbjct: 303 QLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQL 362
Query: 340 ADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVIN 399
A E+ ERL D N R A L VS + D +++S R AL Y + + VI
Sbjct: 363 AQELEERLTKDRNDNDRVATQLAVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 422
Query: 400 KTNSAPPISDLTPPLLFLGLSASKFSPLGSHPS 432
N++ ++ +PPL L L A+KFS S PS
Sbjct: 423 NCNTSGIQTEWSPPLTMLFLCATKFS--ASAPS 453
Score = 47.4 bits (111), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 925 MDTVDIINTIADSSTVDSAINI---ADPT--------KIICDKCSQPIDINELQEHQDYH 973
MD ++ SS SA+ + A PT ++ C+KC + + ++ EH DYH
Sbjct: 612 MDLAHNSQSMHASSASKSALEVTQKATPTPSILAAEDQVPCEKCGSLVPVWDMPEHMDYH 671
Query: 974 FALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFF 1033
FALEL + P+S SN S + ++ KR S L + ++T++ FF
Sbjct: 672 FALELQKSFLQPHS----SNPQVVSTVSHQ--GKRNPKSPLACTNKRPRPEGMQTLESFF 725
Query: 1034 KP 1035
KP
Sbjct: 726 KP 727
>gi|402588248|gb|EJW82181.1| ImpB/MucB/SamB family protein [Wuchereria bancrofti]
Length = 518
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 165/437 (37%), Positives = 241/437 (55%), Gaps = 27/437 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMR 61
RIIALIDMDCFY QVE +L P L+GKP+AVVQ+++ +GGG++A++YEAR GV R M
Sbjct: 5 RIIALIDMDCFYVQVEQRLQPHLYGKPVAVVQHSSGNNRGGGLLAISYEARPFGVKRGMF 64
Query: 62 GDEAKQHCPEIELCRVPSVR--GKADISKYRNAGREVIAVLSEFSN--IVERASIDEAYI 117
++AK CP + LC VP KADI++YR+A EV VL EF++ IVERAS+DEAY+
Sbjct: 65 PEQAKALCPGLTLCYVPVGEHVDKADITRYRDASAEVFKVLHEFNSQIIVERASVDEAYL 124
Query: 118 DLTDVVHERMKS------IGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW----LGQV 167
DL+ +V ++ G A L T V G D N+ + +W +G +
Sbjct: 125 DLSALVEHVFETTDPSIRYGKSDAMDLFPTTHVANGTDVNE-----GKIPDWKYDRIGSL 179
Query: 168 YSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKP 227
+S + + +L I +VE+IR + T F+CSAGI +K++AKLVC HKP
Sbjct: 180 HSFISETCKTKDDYKLKLIIGADLVEQIRRNIKESTAFNCSAGIGSSKMIAKLVCSRHKP 239
Query: 228 QKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEE 287
+Q+++ ++ ++ I +VR+LGGKLG ++E TM EL K S+ L +F
Sbjct: 240 GQQTVVFNEAIPKVFEYTPINEVRNLGGKLGRALMEKFDIKTMGELSKISMSHLSEYFPA 299
Query: 288 KTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
+ A W+Y IA GID E V AR S+ K FPG L T DV W++ L E+ +RL
Sbjct: 300 Q-AKWVYNIAHGIDEEKVTARDKQSSVAVSKNFPGVNALKTDVDVKFWLEGLVKELVKRL 358
Query: 348 EDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPI 407
DD N R A L + T + +RS+ + +Y + + + + N +
Sbjct: 359 IDDQIANIRTASTLHIGCTTDM-----HLTRSMQMKTYDPKALFTSVWAIFRQINKSGIP 413
Query: 408 SDLTPPLLFLGLSASKF 424
P + + LSA +F
Sbjct: 414 ETWDPSVKNIALSADRF 430
>gi|308480033|ref|XP_003102224.1| CRE-POLH-1 protein [Caenorhabditis remanei]
gi|308262150|gb|EFP06103.1| CRE-POLH-1 protein [Caenorhabditis remanei]
Length = 602
Score = 268 bits (686), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 173/442 (39%), Positives = 253/442 (57%), Gaps = 34/442 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKG--GGIIAVNYEARHKGVTRHMR 61
R+I+LIDMDCFY QVE + PSL GKP+ VVQ++ +G GGI+AV+YEAR GV R M
Sbjct: 3 RVISLIDMDCFYAQVEQRDQPSLWGKPVIVVQHSR-QGVEGGILAVSYEARPFGVKRGMT 61
Query: 62 GDEAKQHCPEIELCRVP--SVRGKADISKYRNAGREVIAVLSEF--SNIVERASIDEAYI 117
+AKQ CP+I +C VP KADI KYR+A EV VL+ F S IVE+AS+DEA++
Sbjct: 62 VSDAKQKCPQITICHVPIGEYADKADIQKYRDASAEVFRVLNNFDSSIIVEKASVDEAFL 121
Query: 118 DLTDVVHER---MKSIGHI------AASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVY 168
DL+ ++ M+ G + A SQL +T + G D + D + + Q
Sbjct: 122 DLSAYTAQKLDEMRENGTLEEFVETALSQLPSTHLAN-GQDFAENDHLREQFLSEFIQNS 180
Query: 169 SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQ 228
+ +D +L+ L IA VE IR + +TQF+CSAG+ +NK++AKLVC HKP+
Sbjct: 181 TYSDENLL--------LLIAACTVETIRKRIRDETQFYCSAGVGNNKMMAKLVCARHKPR 232
Query: 229 KQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEK 288
+Q+++P V + I VR GGK G+ V E L S M E+ + L F ++
Sbjct: 233 QQTLIPWKYVREILRLTPIGDVRGFGGKFGNRVQEMLNISLMGEILEIEWHLLIEAFPDQ 292
Query: 289 TASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
+L +A G+D EPV R S SI K FPGK+ + T +++ W++ L E+ +RL
Sbjct: 293 H-EYLRAVAEGLDDEPVRPRRESSSIAVSKNFPGKSAIRTTREMRKWVEGLVKELAKRLV 351
Query: 349 DDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASY---KLQDIVEVSMQVINKTNSAP 405
D NKR A+ L S E +GK +++ + SY L +++ +++ +N++N A
Sbjct: 352 VDQVENKRTAENLVYSLLTE-EGK---PQKTLKIGSYLPNSLFELIWTAIRGLNRSNLAG 407
Query: 406 -PISDLTPPLLFLGLSASKFSP 426
S TPP+L + LSAS+F P
Sbjct: 408 NEDSPWTPPVLNISLSASRFQP 429
>gi|341901232|gb|EGT57167.1| CBN-POLH-1 protein [Caenorhabditis brenneri]
Length = 587
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 176/453 (38%), Positives = 258/453 (56%), Gaps = 34/453 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKG--GGIIAVNYEARHKGVTRHMR 61
R+I+LIDMDCFY QVE + NP+L +P+ VVQ++ +G GGI+AV+YEAR GV R M
Sbjct: 3 RVISLIDMDCFYAQVEQRDNPALWDQPVIVVQHSR-QGVEGGILAVSYEARPFGVKRGMS 61
Query: 62 GDEAKQHCPEIELCRVP--SVRGKADISKYRNAGREVIAVLSEF--SNIVERASIDEAYI 117
+AK CP+I +C VP KADI KYR+A EV VL+ F S IVE+AS+DEA++
Sbjct: 62 VADAKLKCPQINVCHVPIGEYADKADIQKYRDASAEVFRVLNNFDTSIIVEKASVDEAFL 121
Query: 118 DLTDVVHERMKSI---GHI----AASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD 170
DLT +ER++ + G++ A L TF+ G D + D + Q+ +D
Sbjct: 122 DLTTYTNERLEELRENGNLEEFTAIEHLPTTFL-ATGEDVKENDHLRE-------QMLTD 173
Query: 171 TDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ 230
T + +TE+ L IA VE IR + +TQF+CSAG+ +NK++AKLVC HKP++Q
Sbjct: 174 FITGSLHSTENIL-LLIAACTVEAIRDRIHEETQFYCSAGVGNNKMMAKLVCARHKPRQQ 232
Query: 231 SILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+++P V + I VR GGKLG+ V E L + M E+ + L F ++
Sbjct: 233 TLIPWVYVREILRTTPIGDVRGFGGKLGNRVQELLNITLMGEILEIDYSLLVESFPDQ-H 291
Query: 291 SWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
+L IA+G+ EPV R S SI K FPGK + T Q++ W+ L E+ +RL D
Sbjct: 292 EYLIAIAQGMCDEPVRPRKESSSIAVSKNFPGKLAIRTIQELRKWLDGLTKELAKRLWTD 351
Query: 351 LTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYK---LQDIVEVSMQVINKTNSA-PP 406
NKR A+ L S E +GK +++ + +Y L + +++V+N++N A
Sbjct: 352 QNENKRTAENLVYSLLTE-EGK---PQKTLKINNYHPDVLFGQIWAAIKVLNRSNLANSE 407
Query: 407 ISDLTPPLLFLGLSASKFSP--LGSHPSIQQFF 437
TPP+L + LSAS+F P + SI++F
Sbjct: 408 QGPWTPPILNISLSASRFQPGIPAATRSIKEFL 440
>gi|301626020|ref|XP_002942198.1| PREDICTED: DNA polymerase eta-like [Xenopus (Silurana) tropicalis]
Length = 300
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/284 (49%), Positives = 188/284 (66%), Gaps = 15/284 (5%)
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M GD+AK+ C +++L RV GKAD++ YR A EV+ V+S F+ +VERASIDEAYIDL
Sbjct: 1 MFGDDAKKLCADLQLARVREAHGKADLTNYREASVEVMEVMSRFA-VVERASIDEAYIDL 59
Query: 120 TDVVHERMKSIG--HIAASQLSNTFVVGFG---PDNN---DEDARKAGVMEWLGQVYSDT 171
TD V +R++ +G I L T+V G+ PD + E+ R+ G+ +WL +
Sbjct: 60 TDSVQKRLREMGVAPIPGELLKTTYVQGYPQCEPDCDTLSKEELRQRGLEQWLESLPIGD 119
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
S D + LA+ +IVEE+RAAV +T F CSAGIAHNKVLAKL CGL+KP +Q+
Sbjct: 120 PRS-----PDLK-LAVGAIIVEEMRAAVEKETTFQCSAGIAHNKVLAKLACGLNKPNRQT 173
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
IL Q SV L++ L I KVRHLGGKLG + E+L + +L +F+ + LQ+HF EKT S
Sbjct: 174 ILCQGSVPGLFSELPISKVRHLGGKLGTSIRESLSVEYIGQLTQFTEQHLQNHFGEKTGS 233
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
WLY + RGI+ EPV R + KSIGC K FPGKT L+T++ V +W
Sbjct: 234 WLYSLCRGIEDEPVKPRQLPKSIGCSKIFPGKTALSTQEQVQYW 277
>gi|170581390|ref|XP_001895662.1| ImpB/MucB/SamB family protein [Brugia malayi]
gi|158597305|gb|EDP35487.1| ImpB/MucB/SamB family protein [Brugia malayi]
Length = 500
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 157/427 (36%), Positives = 225/427 (52%), Gaps = 59/427 (13%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMR 61
RIIALIDMDCFY QVE +L P L+GKP+AVVQ+++ +GGG++A++YEAR G+ R M
Sbjct: 5 RIIALIDMDCFYVQVEQRLQPHLYGKPVAVVQHSSGNNRGGGLLAISYEARPFGIKRGMF 64
Query: 62 GDEAKQHCPEIELCRVPSVR--GKADISKYRNAGREVIAVLSEFSN--IVERASIDEAYI 117
++AK C E+ LC VP KADI++YR+A EV VL EF++ IVERAS+DEAY+
Sbjct: 65 PEQAKTLCSELTLCYVPVGEHVDKADITRYRDASAEVFKVLHEFNSRIIVERASVDEAYL 124
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
DLT +V +Y TD S+
Sbjct: 125 DLTALVE-----------------------------------------HIYETTDPSIK- 142
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
+L I +VE+IR + T F+CSAGI +K++AKLVC HKP +Q+++ +
Sbjct: 143 -----LKLIIGADLVEQIRRNIKKSTAFNCSAGIGSSKMIAKLVCSRHKPGQQTVVFNEA 197
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+ ++ I +VR+LGGKLG ++E TM EL + S+ L +F + A W+Y IA
Sbjct: 198 IPKVFEYTPINEVRNLGGKLGRALMEKFNIKTMGELSEISMSHLSEYFPAQ-AKWIYNIA 256
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRR 357
GID E V AR S+ K FPG L T DV W++ L E+ +RL DD N R
Sbjct: 257 HGIDDEKVTARDKQSSVAVSKNFPGANALKTDVDVKFWLEGLVKELVKRLIDDQIANIRT 316
Query: 358 AQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFL 417
A L + T + +RS+ + +Y + + + N + P + +
Sbjct: 317 ASTLHIGCTTDI-----HLTRSMQMKTYDPKALFTSVWAIFRHINKSGIPETWDPSVKNI 371
Query: 418 GLSASKF 424
LSA +F
Sbjct: 372 ALSADRF 378
>gi|115534089|ref|NP_497480.2| Protein POLH-1 [Caenorhabditis elegans]
gi|84570637|dbj|BAE72703.1| DNA polymerase eta [Caenorhabditis elegans]
gi|373218637|emb|CCD62153.1| Protein POLH-1 [Caenorhabditis elegans]
Length = 584
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 169/447 (37%), Positives = 252/447 (56%), Gaps = 43/447 (9%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKG--GGIIAVNYEARHKGVTRHMR 61
R+I+LIDMDCFY QVE + NPSL G+P+ VVQ++ +G GGI+AV+YEAR GV R M
Sbjct: 3 RVISLIDMDCFYAQVEQRDNPSLWGQPVIVVQHSR-QGIEGGILAVSYEARPFGVKRGMT 61
Query: 62 GDEAKQHCPEIELCRVP--SVRGKADISKYRNAGREVIAVLSEFSN--IVERASIDEAYI 117
EAK CP+I +C VP KADI KYR+A EV VL+ + + I+E+AS+DEA++
Sbjct: 62 VAEAKLKCPQISICHVPIGEYVDKADIQKYRDASAEVFRVLNNYDSQIIIEKASVDEAFL 121
Query: 118 DLTDVVHERMKSI----GHIAASQLSNTFV----VGFGPD-NNDEDARKAGVMEWLGQVY 168
DL+ +++++ + G Q + T++ + G D +E R+ ++E++
Sbjct: 122 DLSAYTNQKLQELRENEGLEEFLQAAITYLPTTHLATGEDVKENEHLREDVLLEYIENAR 181
Query: 169 SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQ 228
+ T+ L L IA V VE+IR + +TQF CSAG+ +NK++AKLVC HKP+
Sbjct: 182 NCTENLL---------LLIAAVTVEQIRQQIHEETQFFCSAGVGNNKMMAKLVCARHKPR 232
Query: 229 KQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEK 288
+Q+++P V + I VR GGK+G+ + E L + M EL + + QL F +
Sbjct: 233 QQTLIPWFYVREILRLTPIGDVRGFGGKMGNRIQEMLNITLMGELLEVDISQLIETFPNQ 292
Query: 289 TASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
+L +A G EPV R S SI K FPGK + + ++ W+ L E+ +RL
Sbjct: 293 -HEYLRSVAEGHCDEPVRPRKESSSIAVSKNFPGKLSIRSVLELKKWLDGLTKELAKRLA 351
Query: 349 DDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYK---LQDIVEVSMQVINKTN--- 402
D NKR A+ L S E DGK +++ + SY L + + +M+ +NKTN
Sbjct: 352 TDQAENKRTAENLVYSLLTE-DGK---PQKTLKITSYHPDTLFEQIWAAMKGLNKTNATK 407
Query: 403 ---SAPPISDLTPPLLFLGLSASKFSP 426
S P TPP+L + LSA++F P
Sbjct: 408 NEDSGP----WTPPILNISLSATRFQP 430
>gi|268571285|ref|XP_002640994.1| C. briggsae CBR-POLH-1 protein [Caenorhabditis briggsae]
Length = 608
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 166/442 (37%), Positives = 249/442 (56%), Gaps = 34/442 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKG--GGIIAVNYEARHKGVTRHMR 61
R+I+LIDMDCFY QVE + P L G+P+ VVQ++ +G GGI+AV+YEAR GV R M
Sbjct: 3 RVISLIDMDCFYAQVEQRDKPELWGQPVIVVQHSR-QGVEGGILAVSYEARPFGVKRGMS 61
Query: 62 GDEAKQHCPEIELCRVP--SVRGKADISKYRNAGREVIAVLSEFSN--IVERASIDEAYI 117
+AK CP + +C VP KADI KYR+A EV VL+ F + IVE+AS+DEA++
Sbjct: 62 VADAKIKCPHLNICHVPIGEYADKADIQKYRDASAEVFRVLNNFDSTIIVEKASVDEAFL 121
Query: 118 DLTDVVHERMKSI---GHI------AASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVY 168
DLT +++++ I G + + QL +T + N ED ++ + +
Sbjct: 122 DLTAYTNQKLEEIRENGQLEEIVKTSLDQLPSTHLA------NGEDVKENEHLR--EEFL 173
Query: 169 SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQ 228
SD S +TE+ L IA + VE IR + +TQF+CSAG+ +NK++AKLVC HKP+
Sbjct: 174 SDFIESSRNSTENLL-LLIAAITVETIRKRIRDETQFYCSAGVGNNKMMAKLVCARHKPR 232
Query: 229 KQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEK 288
+Q+++P + + I VR GGK+G+ + E L + M E+ + + L F ++
Sbjct: 233 QQTLIPWRNCREILRTTPIGDVRGFGGKMGNRIQEMLNITLMGEILELDIALLIETFPDQ 292
Query: 289 TASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
+L +A G+D EPV R S SI K FPGK + T ++ W+ L E+ +RL
Sbjct: 293 H-EYLRAVAEGLDDEPVRPRKESSSIAVSKNFPGKMAIRTTGELKKWVGGLVKELAKRLG 351
Query: 349 DDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVE---VSMQVINKTNSAP 405
D NKR A+ L S + DGK +++ + SY I E +++ +N++N A
Sbjct: 352 TDQAENKRTAENLVYSLLTD-DGK---PQKTLKMTSYHPDIIFEQVWTAIRALNRSNLAK 407
Query: 406 -PISDLTPPLLFLGLSASKFSP 426
TPP+L + LSAS+F P
Sbjct: 408 NEDGPWTPPVLNISLSASRFQP 429
>gi|414880429|tpg|DAA57560.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 623
Score = 255 bits (652), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 206/366 (56%), Gaps = 47/366 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +DMDCFY Q G+ N + G +V R MRGD
Sbjct: 12 RVIAHVDMDCFYVQ----------GR-------NFGRNGCAYSV---------FRSMRGD 45
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP I L +VP RGKAD++ YR+AG EV+A+L+ ERASIDE Y+DLTD
Sbjct: 46 EAKRVCPGINLVQVPVARGKADLNLYRSAGAEVVAILAS-KGKCERASIDEVYLDLTDAA 104
Query: 124 HERMKSI------GHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
+E + G + SN ++G D ++ ++ V WL Q +D L
Sbjct: 105 NEMVLQAPPDSPEGIFMEAAKSN--ILGLPADASE---KEKNVRAWLCQSEADYQDKL-- 157
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
LA +IV ++R VL +TQF CSAGIAHNK+LAKLV G+HKP +Q+++P SS
Sbjct: 158 -------LACGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSS 210
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V L A+L +KK++ LGGKLG + + L T+ +L F+ ++LQ + T +WL+ A
Sbjct: 211 VQDLLASLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGTWLWKTA 270
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRR 357
RGI E V RL+ KS GC K FPG L V W+ +L +E+ ER++ DL NKR
Sbjct: 271 RGISGEEVEDRLLPKSHGCGKTFPGPRALKYSASVKGWLDQLCEELSERIQSDLNQNKRI 330
Query: 358 AQLLTV 363
AQ LT+
Sbjct: 331 AQTLTL 336
>gi|410931299|ref|XP_003979033.1| PREDICTED: DNA polymerase eta-like, partial [Takifugu rubripes]
Length = 245
Score = 244 bits (624), Expect = 1e-61, Method: Composition-based stats.
Identities = 127/257 (49%), Positives = 173/257 (67%), Gaps = 20/257 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCFY QVE +LNP+L P V QY TWKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRLNPALKNTPCVVAQYKTWKGGGIIAVSYEARAHGVTRNMWVD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++++ RV GKAD++ YR A EVI V+S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLQVARVRESHGKADLTFYREASVEVIEVMSRFA-VIERASIDEAYMDLTAAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+R+K++ I A L ++ R GV +WL + ++ E +
Sbjct: 126 QQRLKNLNDSPIDAHLL--------------KEQRSRGVQQWLAML---PLPAVGEQSSA 168
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+L + +IVEE+RAAV T F CSAGI+HNKVLAKL CGL+KP +Q++LP SV L
Sbjct: 169 ELQLTVGALIVEEMRAAVEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLLPLDSVRDL 228
Query: 242 YANLSIKKVRHLGGKLG 258
+++L + K+R+LGGKLG
Sbjct: 229 FSSLPVGKIRNLGGKLG 245
>gi|384245783|gb|EIE19275.1| DNA/RNA polymerase, partial [Coccomyxa subellipsoidea C-169]
Length = 454
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 159/434 (36%), Positives = 228/434 (52%), Gaps = 31/434 (7%)
Query: 42 GGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLS 101
G +IAV YEAR KGV R MRGD+A++ CP++ L +VP GKAD++ YR +G++V+ +L+
Sbjct: 28 GSLIAVGYEARAKGVKRGMRGDDARKVCPDLNLVQVPVAHGKADLTLYRASGKQVLNILA 87
Query: 102 EFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161
S + ERASIDE Y+D+T+ R+ AAS P N E + G
Sbjct: 88 RLS-VAERASIDECYLDITEEAKRRL------AASSAHPPL-----PINVGEVHGEGGTE 135
Query: 162 EWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLV 221
W + + LA +V E+RAAV + + CSAGIAHNK+LAKL
Sbjct: 136 AWWHRPVGAWGPGQ-------RLLACGAAVVAELRAAVRRELGYSCSAGIAHNKILAKLA 188
Query: 222 CGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQL 281
G+HKP +Q+++ V L A L I K+R LGGK G+E++ L +T+ EL L++L
Sbjct: 189 SGMHKPSQQTLVTLDCVPGLMAGLPIPKLRQLGGKFGEEIMTALNITTVGELSAVPLRRL 248
Query: 282 QSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELAD 341
++ + A WL+ ++RGID E V R + +SI C K F G T L V W+ EL D
Sbjct: 249 EAVCSQADALWLHRLSRGIDDEEVKERQLPQSISCGKTFRGHTALKAFPAVHKWLGELGD 308
Query: 342 EVCERLEDDLTLNKRRAQLLTVSF--TQETDGKVNSCSRSIALASYKLQDIVEVSMQVIN 399
E+ ER+ D N+R +LLTV S SRS L + Q + E +++I
Sbjct: 309 ELEERITADRADNERVPRLLTVGMWGEGGPGTSGGSVSRSCQLRRPESQPMAEDGLKLIK 368
Query: 400 KTNSAPPISDLTPPLLFLGLSASKFSPLGSHPSIQQFFKPQDHPEPMTSEHSSLPEQSTN 459
+ S P +T L++ S + +P GS +I +F KP+ P + S P ST
Sbjct: 369 RWASDRPGWAITS--LYMTASNFQAAPTGSS-TITRFLKPKSAP----GQQSPPPSGSTA 421
Query: 460 ---HDSKKRDKTLL 470
H S D LL
Sbjct: 422 AQPHRSGALDAPLL 435
>gi|256075427|ref|XP_002574021.1| DNA polymerase eta [Schistosoma mansoni]
gi|353229352|emb|CCD75523.1| putative DNA polymerase eta [Schistosoma mansoni]
Length = 400
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 194/337 (57%), Gaps = 6/337 (1%)
Query: 45 IAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS 104
+AV+YEAR G+ R M DE + PE+ + +VP RGKA++++YR+A EVI +SEF+
Sbjct: 5 LAVSYEARALGIKRGMFSDEIRVQHPEVIIFKVPEKRGKAELTRYRDASSEVIQCISEFT 64
Query: 105 NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL 164
+ +ERASIDEAY+DLT ++ + S H V D +E + +
Sbjct: 65 SDIERASIDEAYVDLTVLIQDHNLSSLHPNPES-----YVLVNSDIAEESKLELTETNCV 119
Query: 165 GQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGL 224
D L N + + LA+A +V IR AV +KT F CSAGI NK +AKL C L
Sbjct: 120 SLSGVDWIKLLDSNFAEGRRLAVASELVYRIRQAVFTKTGFKCSAGIGPNKSIAKLACSL 179
Query: 225 HKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH 284
+KP KQ+I+PQ S+ +L N I K+R+LGGKLG VV+ L+ T+ +L L L
Sbjct: 180 NKPNKQTIIPQESIPILLENTHINKIRNLGGKLGSTVVKKLKIETLGQLSSIPLSVLTKE 239
Query: 285 FEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVC 344
F EKT+ WL+ ++ GIDHE V R + KS+GC K F G+ L + + + W+ LA+E+
Sbjct: 240 FGEKTSKWLHDLSHGIDHEVVTTRSLPKSVGCSKNFLGRATLTSSEQIKRWLLCLAEEIF 299
Query: 345 ERLEDDLTLNKRR-AQLLTVSFTQETDGKVNSCSRSI 380
ERL+ D ++R +L+ + T G + SR++
Sbjct: 300 ERLDVDYHQHQRYPTRLILYARTTNDPGYIGGISRTL 336
>gi|118763825|gb|AAI28367.1| Polh protein [Mus musculus]
Length = 556
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/270 (45%), Positives = 170/270 (62%), Gaps = 6/270 (2%)
Query: 156 RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 215
RK G+++WL + SD TS D + L + +IVEE+RAA+ SKT F CSAGI+HNK
Sbjct: 28 RKQGLLQWLDSLQSDDPTS-----PDLR-LTVGAMIVEEMRAAIESKTGFQCSAGISHNK 81
Query: 216 VLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEK 275
VLAKL CGL+KP +Q+++ SV L++ + I+K+R LGGKLG V+E L M +L +
Sbjct: 82 VLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQ 141
Query: 276 FSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
F+ QLQSHF EK SWLY + RGI+H+PV R + K+IGC K FPGKT LATR+ V W
Sbjct: 142 FTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWW 201
Query: 336 IQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSM 395
+ +LA E+ ERL D N R A L VS + D +++S R AL Y + + +
Sbjct: 202 LLQLALELEERLTKDRNDNDRVATQLVVSIRFQGDRRLSSLRRCCALPRYDAHKMSQDAF 261
Query: 396 QVINKTNSAPPISDLTPPLLFLGLSASKFS 425
I N++ ++ +PPL L L A+KFS
Sbjct: 262 AAIRNCNTSGIQTEWSPPLTMLFLCATKFS 291
Score = 40.4 bits (93), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 913 INKGNGNADVSPMDTVDI---INTIADSSTV--DSAINIADPTK------IICDKCSQPI 961
++ G + V P+ + + +N DS V A N + T+ ++C+KC +
Sbjct: 426 VDSGPDDGAVKPVSSKAVSTEMNVAGDSPNVLDSPAYNSQEVTQRATEDQVLCEKCDSLV 485
Query: 962 DINELQEHQDYHFALEL 978
+ ++ EH DYHFALEL
Sbjct: 486 PVWDMPEHTDYHFALEL 502
>gi|428181880|gb|EKX50742.1| hypothetical protein GUITHDRAFT_39857, partial [Guillardia theta
CCMP2712]
Length = 334
Score = 223 bits (568), Expect = 4e-55, Method: Composition-based stats.
Identities = 140/344 (40%), Positives = 189/344 (54%), Gaps = 42/344 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNT----------------WKGGGIIAV 47
R++A +DMDCFY QVE + + SL GKP+AV+QYN G +IAV
Sbjct: 3 RVVAHVDMDCFYVQVEQRRDESLRGKPVAVIQYNPNGDLQDVRPDENRRCDHSDGSLIAV 62
Query: 48 NYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIV 107
+YEAR KGV R MRG EA+Q CP++ L +VP K+DI+ YR AG EV+ VL+ FS+
Sbjct: 63 SYEARAKGVKRIMRGKEARQACPDLILIQVPVAHKKSDINLYREAGAEVVNVLARFSSAC 122
Query: 108 ERASIDEAYIDLTDVVHERMKSI--------GHIAASQLSNTFVVGFGPDNNDEDARKAG 159
ERASIDE Y D+TD ++ I G ++ T+V G+ E G
Sbjct: 123 ERASIDEVYCDITDAALLQLDEIERNFGADVGPTLLDEMDKTWVAGY------EQQTGNG 176
Query: 160 VMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
EW + S TS + LA +V ++R AVL +T F CSAGI+HNK+LAK
Sbjct: 177 QEEWWRRPLSRWKTSE-------RLLAAGAQVVTKMRRAVLEETSFTCSAGISHNKILAK 229
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGG-KLGDEVVETLQCSTMLELEKFSL 278
L GLHKP +Q+ILP + L +L I ++R LGG KLG + E T+ EL+K
Sbjct: 230 LGSGLHKPNQQTILPTEAAQKLMQDLPISRLRGLGGEKLGKAIQEEFHVETVGELQKIPC 289
Query: 279 KQLQSHFEEKTAS----WLYYIARGIDHEPVNARLVSKSIGCCK 318
L S F + W+Y IA+GI +PV + ++KS G K
Sbjct: 290 PLLVSKFGDSPKPPGGLWVYRIAKGICLQPVKDQELAKSRGSGK 333
>gi|307103424|gb|EFN51684.1| hypothetical protein CHLNCDRAFT_139920 [Chlorella variabilis]
Length = 720
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 169/487 (34%), Positives = 243/487 (49%), Gaps = 75/487 (15%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW-----KG-----------GGIIAV 47
+ I +D+D FY QVE K +P L G+P+ VVQYN + +G G +IAV
Sbjct: 8 KAICHVDLDAFYAQVEVKQHPELRGQPVGVVQYNPYGLLETRGPAENRVMNSSNGSLIAV 67
Query: 48 N-------------YEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGR 94
YEAR GV R+MRGD+A+ CP I+L VP+ GKAD++ YR G+
Sbjct: 68 RRAAPRRAAPPVLLYEARAAGVKRNMRGDQARAACPTIQL--VPTAHGKADLTLYRGEGK 125
Query: 95 EVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI-----AASQLSNTFVVGFGPD 149
+V +LS + ERASIDE Y+DLTD R+ + G + +A Q+ GF
Sbjct: 126 KVQDILSRLAT-TERASIDECYLDLTDEAQRRLAACGGMPPLPPSAEQVHVMQEGGF--- 181
Query: 150 NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSA 209
G W + + A A + A L + CSA
Sbjct: 182 --------VGAAAW----WQRPPHHWLPGERLLACAAAAAAELRAAVRAELG---YSCSA 226
Query: 210 GIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCST 269
G+AH+K++AKL GLHKP +Q++LP S+V+ L L I K++ LGGKLG+ V+ L T
Sbjct: 227 GVAHSKLMAKLCSGLHKPAQQTVLPASAVAALLGQLPIPKLKGLGGKLGERVMSELGVET 286
Query: 270 MLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATR 329
+ +L L +L++ F EK A WL +ARG + V R ++KS+GC K F G+ L
Sbjct: 287 VGQLAAVPLSRLEAAFGEKEAQWLAALARGATDDKVEERRLAKSVGCGKTFRGRQALRDL 346
Query: 330 QDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSF--------TQETDGKV-------- 373
V W+ EL E+ ERL++DL N R A+LLTVSF TQ+ G
Sbjct: 347 AAVHKWLLELGGELAERLQEDLQENSREAKLLTVSFAPQLPWVATQQPGGTALFHAAPGY 406
Query: 374 NSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPLGSHPS- 432
++ +RS L + I E ++ +I + + L + ++AS F + S S
Sbjct: 407 HATTRSCPLRKATAEAIAEDALALIKRWAAE---QGQGWSLSTMDVAASNFVAVQSAASA 463
Query: 433 IQQFFKP 439
I +FFKP
Sbjct: 464 ITRFFKP 470
>gi|391347259|ref|XP_003747882.1| PREDICTED: DNA polymerase eta-like [Metaseiulus occidentalis]
Length = 270
Score = 220 bits (560), Expect = 4e-54, Method: Composition-based stats.
Identities = 129/282 (45%), Positives = 169/282 (59%), Gaps = 34/282 (12%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKG--GGIIAVNYEARHKGVTR 58
+ R IALIDMDCFY QVE +L P GKP VVQ T G GG IAVNYEAR KG+ R
Sbjct: 7 LLGRCIALIDMDCFYVQVEERLQPQHKGKPGVVVQC-TGSGVEGGCIAVNYEARAKGIKR 65
Query: 59 HMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYID 118
MR ++A+ + + VP VR KAD+S+YR AG EV+ V F +VERASIDEAYID
Sbjct: 66 GMRPNQARALSSDCIIYHVPEVRQKADLSRYRQAGAEVLKVFCSFGAVVERASIDEAYID 125
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
LT +V ++ + + L N + G+ EDA TS +E
Sbjct: 126 LTGLVANKLTCV---PTAALGNASIEGY------EDA-----------------TSFLEQ 159
Query: 179 ---TEDFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
TED + LA I+ E+RA VL +T F CSAGI+HNK++AKL GLHKP + +++
Sbjct: 160 VDWTEDGGDAYLARGAAIMMEMRAKVLQETGFTCSAGISHNKIVAKLAAGLHKPNRLTVV 219
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEK 275
P SSV++L+ + I KVR+LGGKLG+ + + L TM EL +
Sbjct: 220 PHSSVALLFTTVPIGKVRNLGGKLGENITKDLNVQTMAELAQ 261
>gi|298709408|emb|CBJ49221.1| translesion synthesis DNA polymerase eta splice variant [Ectocarpus
siliculosus]
Length = 838
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/440 (32%), Positives = 211/440 (47%), Gaps = 84/440 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNT-----------------WKGGGIIA 46
R+IA IDMD FY Q+E + +L G+P+ VVQY T IIA
Sbjct: 44 RVIAHIDMDAFYAQIEQLRDAALTGRPVVVVQYPTSNHDIKDMAPDDNRVVEGSASSIIA 103
Query: 47 VNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNI 106
V+YEAR GV R M+ +A++ CPE+ L +VP+ GKADIS YR+AG V+AVL
Sbjct: 104 VSYEARPFGVKRGMKAGDARKVCPELSLVQVPTRNGKADISFYRHAGERVVAVLERAGGA 163
Query: 107 ---VERASIDEAYIDLT------------------------------------------- 120
VE+ASIDE Y+D+T
Sbjct: 164 LTTVEKASIDEVYVDVTRAAHALLSSLGSHNSESGGDQPQQHQQQDEDGKGASAEEGSKA 223
Query: 121 ----------DVVHERMKSIGH----IAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ 166
+V +R + IG S + T V G D+ ++ + A + W
Sbjct: 224 PPAASPMEDGEVSKKRWEDIGEGGWTAVLSATATTHVAGLSDDHASKEQQLADGVSW--- 280
Query: 167 VYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHK 226
++ T + T D + L+ +V +RAAV S+ + C+AG+AHNK+LAKL +HK
Sbjct: 281 -WARTQEAF---TRDQELLSCGAAVVSRLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHK 336
Query: 227 PQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE 286
P Q++LP V +++ L +++VR GGK G +++E L ST E+ +LQ
Sbjct: 337 PNAQTVLPLDKVEVVFHTLPVERVRGWGGKFGVKMMEKLGVSTAGEVAAVGAAELQRVLG 396
Query: 287 EKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCER 346
++ + + I +PVNAR KS+GC K FPGKT L + ++ W+ EL+ E+ R
Sbjct: 397 DEEGWRAWEKSNAICRDPVNARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELISR 456
Query: 347 LEDDLTLNKRRAQLLTVSFT 366
L + + LTVSF
Sbjct: 457 LVEQQEGEGQTPSKLTVSFA 476
>gi|145352281|ref|XP_001420480.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580714|gb|ABO98773.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 534
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 146/427 (34%), Positives = 209/427 (48%), Gaps = 69/427 (16%)
Query: 2 TSRIIALIDMDCFYCQVECK------------LNPSLHGKPLAVVQYNTWKGGGI----- 44
T R++A +D+D FYCQVE + S PL VVQYN ++ GG+
Sbjct: 8 THRVVAHLDLDAFYCQVERRDLRAKTAAGRRDGRASAEDVPLVVVQYNPFERGGVRALAP 67
Query: 45 ---------------IAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKY 89
IAV+YEAR +GV R+MRG EA+ P + +VP+ R KAD++ Y
Sbjct: 68 DDDRELRDGFENHSLIAVSYEARARGVKRNMRGREARALAPACAVVQVPTRRSKADLTLY 127
Query: 90 RNAGREVIAVLSEFSNIVERASIDEAYIDLTD------------VVHERMKSIGHIAASQ 137
R AGREV AVL+ I ERASIDEAY+DLT+ + E+ ++ AS
Sbjct: 128 REAGREVAAVLARGGTI-ERASIDEAYLDLTESAKKVLEETAWATILEKARTSHAAGASA 186
Query: 138 LSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRA 197
+S N DE EW E+ + LA I +R
Sbjct: 187 VSGKGYASVAWWNRDES-------EW---------------REEEKLLAAGAYICFNLRK 224
Query: 198 AVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKL 257
A + + + SAGIA NK+LAKL G++KP Q++L S L L I ++R LG K
Sbjct: 225 ACVDELGYTLSAGIALNKMLAKLTSGMNKPASQTVLCPDHTSTLLDELPIDRIRGLGAKF 284
Query: 258 GDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCC 317
G E+ + L T+ EL + L++L+ E+ A W+ ++ G+D +PV AR + KSIG
Sbjct: 285 GRELADGLNVKTIGELARTPLRKLEEVCGEEKAQWVRKVSLGLDDDPVKAREMPKSIGTG 344
Query: 318 KRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNS-- 375
K F G + + HW+ EL E+ +R E D R +LLT+ + + + +S
Sbjct: 345 KTFRGALAIRSIASAKHWLAELTAELNDRCEADEEEWNRVPKLLTLGLSSPDERETSSGH 404
Query: 376 CSRSIAL 382
CSR L
Sbjct: 405 CSRRCPL 411
>gi|209489406|gb|ACI49169.1| hypothetical protein Csp3_JD01.001 [Caenorhabditis angaria]
Length = 975
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 183/309 (59%), Gaps = 13/309 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKG--GGIIAVNYEARHKGVTRHMR 61
RII LIDMDCFY QVE + P L GKP+ VVQ++ +G GGI+AV+YEAR G+ R M
Sbjct: 673 RIIGLIDMDCFYAQVEQRDQPDLWGKPVIVVQHSR-QGVLGGILAVSYEARTFGIKRGMT 731
Query: 62 GDEAKQHCPEIELCRVP--SVRGKADISKYRNAGREVIAVLSEFSN--IVERASIDEAYI 117
EAK C ++ +C VP KADI KYR+A EV VL+ + IVE+AS+DEA++
Sbjct: 732 VTEAKAKCADLNVCHVPIGEYADKADIQKYRDASAEVFEVLNNIDSNIIVEKASVDEAFL 791
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
DL+ + + ++ S + D ND+ + ++ + + Y +T +
Sbjct: 792 DLSIYIEKILEVEQETELSDIIGALPTTHIADGNDKKETEEERIDRIAKFYEETKSD--- 848
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
E+ ++L IA + +E+IRA + KTQF+CSAGI +NK++AKLVC HKP++Q+I+P
Sbjct: 849 --ENQKKLMIAAIAIEDIRAKIREKTQFYCSAGIGNNKMMAKLVCARHKPRQQTIIPFQY 906
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V + I +R GGK+G +++E L+ TM E+ +++ F E+ +L +A
Sbjct: 907 VRDILKVTPIGDIRGFGGKMGTKIMEMLKIKTMGEILTIEFERVVEAFPEQ-HEYLKCVA 965
Query: 298 RGIDHEPVN 306
G D EPV+
Sbjct: 966 EGYDDEPVH 974
>gi|326915374|ref|XP_003203993.1| PREDICTED: DNA polymerase eta-like [Meleagris gallopavo]
Length = 554
Score = 213 bits (542), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/274 (42%), Positives = 167/274 (60%), Gaps = 10/274 (3%)
Query: 153 EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIA 212
E+ R+ G+ EWL + D N D Q L++ VIVEE+R AV T F CSAGI+
Sbjct: 23 EELRQRGLQEWLASLSFDN-----LNCPDLQ-LSMGAVIVEEMRVAVEKATGFRCSAGIS 76
Query: 213 HNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLE 272
HNK+LAKL CGL+KP +Q+++ SV L++ + + +R+LGGKLG + + L + +
Sbjct: 77 HNKMLAKLACGLNKPNRQTLVSSRSVPQLFSQMPVSSIRNLGGKLGVAITDILGVEYIGQ 136
Query: 273 LEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDV 332
+ +FS +LQ+HF +KT SWLY + RGID EPV R + +SIGC K FPGKT LAT+++V
Sbjct: 137 VTQFSEMELQTHFGDKTGSWLYDLCRGIDDEPVKNRHLPQSIGCSKNFPGKTALATQKEV 196
Query: 333 SHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVE 392
HW+ +LA E+ RL D + N R A+ L V + D ++ SR A+ Y Q I
Sbjct: 197 QHWLLQLALELESRLIKDRSQNHRVAKQLMVVIRMQGDTRL---SRFCAVTRYDAQKIFS 253
Query: 393 VSMQVINKTNSAPP-ISDLTPPLLFLGLSASKFS 425
+ +I N A + +PPL+ + L+ASKFS
Sbjct: 254 DAFALIQNCNMAGTHQAAWSPPLISVHLAASKFS 287
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 954 CDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSK 1013
C+KC Q + EL EH DYHFA+EL S S+ + +++ N K++ G P+K
Sbjct: 468 CEKCGQYVLAWELPEHMDYHFAVELQ------RSFQESSSPPALAEVPNPKAAASGSPAK 521
Query: 1014 LNSFKNS---ENFKK-----LKTIDQFFK 1034
+ + + N K+ +T+D FFK
Sbjct: 522 VRNRPKTPTGPNAKRPRESVTRTLDFFFK 550
>gi|452822562|gb|EME29580.1| DNA polymerase eta subunit [Galdieria sulphuraria]
Length = 546
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 159/495 (32%), Positives = 240/495 (48%), Gaps = 103/495 (20%)
Query: 5 IIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+I +D+DCFY QVE L+PS PL V Q++ G+IAVNY AR G++RH R
Sbjct: 19 VIIHLDLDCFYAQVESVRLGLDPS---TPLCVQQWD-----GVIAVNYAAREYGISRHER 70
Query: 62 GDEAKQHCPEIELCRVPSV-------------------RGKAD----ISKYRNAGREVIA 98
++ K+ CP L V +V GK++ + +YR A ++
Sbjct: 71 IEKVKEKCPNCVLVHVETVGFPDQSSSRENVSNPDLLNHGKSETKVSLDRYREASAKIFQ 130
Query: 99 VLSEFSNIVERASIDEAYIDLTDVVHERM-------KSIGHIAASQLSNTFVVGFGPDNN 151
+L +S + E+ASIDEAY+D+++ V + + SIG I QLS T
Sbjct: 131 LLFSYSELCEKASIDEAYLDVSEQVQDILVATRNQRSSIGSIF-EQLSMT---------- 179
Query: 152 DEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGI 211
+ +A E + Q + + L Q L+I I +IR A+ S+ + SAGI
Sbjct: 180 --EKERAYYFETIFQPFGKRELPLS------QILSIGCAIAAKIRYAIYSQFNYTSSAGI 231
Query: 212 AHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTML 271
A NK+LAKL L+KP +Q+++ +V L NL +KK+R LGGKLG + E T
Sbjct: 232 AENKLLAKLGSSLNKPNRQTLISPKAVPFLLENLPLKKLRGLGGKLGTRIEERTNAKTAK 291
Query: 272 ELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQD 331
E + +L++ + A W+Y + RGID+ PVNAR ++KSI K F + + +
Sbjct: 292 EAQNVTLEKWNEIVGRENAEWIYNLVRGIDYSPVNARGITKSILAAKSFKAE---CSWEG 348
Query: 332 VSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQET-----------DGK--VNSCSR 378
+ WI+ LA E+CERL D T+N RR V ++ +GK V+S SR
Sbjct: 349 MEKWIKILAYELCERLRKDETMNSRRPINFIVHYSSVGSVSSSKSIPFPNGKDRVSSLSR 408
Query: 379 SIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKF----SPLGSHPSIQ 434
+ +M+++ N + P L LS +KF S LG SI
Sbjct: 409 N--------------AMKILKTAN------NFCFPCNRLSLSVTKFLKTSSDLG---SIA 445
Query: 435 QFFKPQDHPEPMTSE 449
F KPQ++ + + E
Sbjct: 446 AFLKPQENHQKLVEE 460
>gi|355712653|gb|AES04421.1| polymerase , eta [Mustela putorius furo]
Length = 222
Score = 204 bits (519), Expect = 2e-49, Method: Composition-based stats.
Identities = 114/228 (50%), Positives = 149/228 (65%), Gaps = 18/228 (7%)
Query: 26 LHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKAD 85
L KP AVVQY +WKGGGI+AV+YEAR GVTR M D+AK+ CP++ L +V RGKAD
Sbjct: 1 LRNKPCAVVQYKSWKGGGIVAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRESRGKAD 60
Query: 86 ISKYRNAGREVIAVLSEFSNI---VERASIDEAYIDLTDVVHERMKSIGH--IAASQLSN 140
++KYR A EV+ V+S F+ I +ERASIDEAYIDLT V ER++ + I+A L
Sbjct: 61 LTKYREASVEVMGVMSRFAVIDAVIERASIDEAYIDLTGAVQERLQKLQGQPISADLLPT 120
Query: 141 TFVVGF--GP-----DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVE 193
T++ G GP + E+ RK G+ +WL + D TS D Q L + VIVE
Sbjct: 121 TYIEGLPQGPTTAEGTDQKEETRKQGLFQWLDSLQIDNPTS-----PDLQ-LTVGAVIVE 174
Query: 194 EIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
E+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++ SV L
Sbjct: 175 EMRAAIEKETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 222
>gi|298710336|emb|CBJ31954.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 644
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 150/474 (31%), Positives = 218/474 (45%), Gaps = 75/474 (15%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I D+DCFYCQVE PLAV Q++ G+IAVNYEAR GV R R
Sbjct: 9 GRVIVHADLDCFYCQVEHVRLGIPTSVPLAVQQWD-----GLIAVNYEARKSGVKRGDRT 63
Query: 63 DEAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEFSNI 106
AKQ CP+I L V ++ K + +YR A ++A+
Sbjct: 64 TAAKQKCPQITLVHVETIGADDELDDAGTRHDKGACKVSLERYRTASFAIMAIFQAHCRR 123
Query: 107 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ 166
VERASIDEAY+DLT+ + + + + N V P+ +
Sbjct: 124 VERASIDEAYLDLTEEAAKLCQEV------EAGNARDVADSPETD--------------- 162
Query: 167 VYSDTDTSLMENTEDFQELAIAGV-IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLH 225
T ++ T F +AG + +R AV + F SAGIA NKVLAKL ++
Sbjct: 163 -LQGTAGHRVDPTNAFDRALLAGARLTAAMRLAVEQELGFTVSAGIASNKVLAKLASSIN 221
Query: 226 KPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHF 285
KP KQ+++P + S + + ++ VR LGGKLG+ VV + +L++FS + L +F
Sbjct: 222 KPNKQTVVPAGASSDMLDTVPLRSVRGLGGKLGETVVSWSKAEKASDLKRFSQQDLVGNF 281
Query: 286 EEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCE 345
KT WL+ RG+D EPV L KS+ CK F T + + V +W++ L E+ +
Sbjct: 282 GTKTGEWLWRACRGMDDEPVAPNLKPKSLSVCKSF---TPVRDEESVLNWMRLLCTELSQ 338
Query: 346 RLEDDLTLNKRRAQLLTVSF-------------TQETDGKVNSC---SRSIALA----SY 385
R+ D RRA LT+ +GK N+ SR++ + S
Sbjct: 339 RIAVDREAWSRRATKLTLQMISLKPGSRANQRDAGGGNGKSNTSTTRSRTVDIPGGGESP 398
Query: 386 KLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPL-GSHPSIQQFFK 438
+V +M V KT++A P S L L+A +F L SI F +
Sbjct: 399 TTASLVSEAMAVFAKTDNALPCSRLA-------LTAHEFCGLISGRGSIASFLR 445
>gi|414880430|tpg|DAA57561.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 220
Score = 194 bits (493), Expect = 2e-46, Method: Composition-based stats.
Identities = 108/219 (49%), Positives = 138/219 (63%), Gaps = 21/219 (9%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +DMDCFY QVE + NP+L G+P AVVQYN WKGGG+IAV+YEAR GV R MRGD
Sbjct: 12 RVIAHVDMDCFYVQVEQRRNPALRGQPTAVVQYNGWKGGGLIAVSYEARGFGVKRSMRGD 71
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP I L +VP RGKAD++ YR+AG EV+A+L+ ERASIDE Y+DLTD
Sbjct: 72 EAKRVCPGINLVQVPVARGKADLNLYRSAGAEVVAILAS-KGKCERASIDEVYLDLTDAA 130
Query: 124 HERMKSI------GHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
+E + G + SN ++G D ++ ++ V WL Q +D L
Sbjct: 131 NEMVLQAPPDSPEGIFMEAAKSN--ILGLPADASE---KEKNVRAWLCQSEADYQDKL-- 183
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 216
LA +IV ++R VL +TQF CSAGIAHNKV
Sbjct: 184 -------LACGAIIVAQLRVRVLEETQFTCSAGIAHNKV 215
>gi|449297801|gb|EMC93818.1| hypothetical protein BAUCODRAFT_36277 [Baudoinia compniacensis UAMH
10762]
Length = 723
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/401 (32%), Positives = 196/401 (48%), Gaps = 58/401 (14%)
Query: 4 RIIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R IALID+D FY Q E ++PS KPLAV Q+ G+IA+NY AR G++RH+
Sbjct: 41 RCIALIDLDAFYAQCETVRLGIDPS---KPLAVQQWQ-----GLIAINYPARAFGLSRHV 92
Query: 61 RGDEAKQHCPEIELCRVPSVRG---------------------KADISKYRNAGREVIAV 99
EAK+ CPEI V + + K + YR R+++A+
Sbjct: 93 TISEAKEKCPEIICQHVATWKAGDTKWSYELNGADAGREISSRKVSLDPYRIQSRKILAL 152
Query: 100 LSEF----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDA 155
+ EF VE+ASIDE ++DL+ VH S L + GP D+ +
Sbjct: 153 IKEFLPADRQKVEKASIDEVFLDLSAHVH-----------SLLLERYPELRGPPPYDDPS 201
Query: 156 RK-----AGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIRAAVLSKTQFHC 207
++W D D+S E E D+ ++ IA IV ++R AV + + C
Sbjct: 202 EPLPRPPTTALDWAADSLVDLDSSQTEEDEPDWDDVCALIASEIVRDVRKAVFDQLHYTC 261
Query: 208 SAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC 267
SAGI+ NK+LAKL G HKP Q+++ +V + K+R+LGGKLGDE+V
Sbjct: 262 SAGISKNKMLAKLGAGHHKPNGQTVIRNRAVQQFLSGFKFTKIRNLGGKLGDELVAAFNT 321
Query: 268 STMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLA 327
+ E+ K L+QL+ F + T SWLY RG D VN R KS+ K F + +
Sbjct: 322 DLVSEMLKVPLEQLKKQFGDDTGSWLYSTFRGEDTSEVNPRTQIKSMLSAKSF--RPSIN 379
Query: 328 TRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQ 367
+ + W++ ++ RL E+ + NKRR + + + Q
Sbjct: 380 SFEVACKWLRIFVADIFSRLVEEGVLENKRRPKTINLHHRQ 420
>gi|297713023|ref|XP_002833023.1| PREDICTED: DNA polymerase eta, partial [Pongo abelii]
Length = 492
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 130/210 (61%)
Query: 216 VLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEK 275
VLAKL CGL+KP +Q+++ SV L++ + I+K+R LGGKLG V+E L M EL +
Sbjct: 1 VLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQ 60
Query: 276 FSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
F+ QLQSHF EK SWLY + RGI+H+PV R + K+IGC K FPGKT LATR+ V W
Sbjct: 61 FTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWW 120
Query: 336 IQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSM 395
+ +LA E+ ERL D N R A L VS + D +++S R AL Y + +
Sbjct: 121 LLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAF 180
Query: 396 QVINKTNSAPPISDLTPPLLFLGLSASKFS 425
VI N++ ++ +PPL L L A+KFS
Sbjct: 181 TVIKNCNTSGIQTEWSPPLTMLFLCATKFS 210
Score = 46.2 bits (108), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 29/128 (22%)
Query: 925 MDTVDIINTIADSSTVDSAINI---ADPT--------KIICDKCSQPIDINELQEHQDYH 973
MD ++ SS SA+ + A PT ++ C+KC + + ++ EH DYH
Sbjct: 374 MDLAHNSQSMHASSASKSALEVTQKATPTPSLLAAEDQVPCEKCGSLVPVWDMPEHMDYH 433
Query: 974 FALELSTTS-EPPNSTSNISNSSSSSKILNKKSS-----KRGRPSKLNSFKNSENFKKLK 1027
FAL+L + +P +S + ++ S N KSS KR RP + ++
Sbjct: 434 FALKLQKSFLQPHSSNPQVVSAISHQGKRNPKSSLACTNKRPRP------------EGMQ 481
Query: 1028 TIDQFFKP 1035
T++ FFKP
Sbjct: 482 TLESFFKP 489
>gi|30694597|ref|NP_851130.1| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|13430742|gb|AAK25993.1|AF360283_1 putative DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|21280927|gb|AAM44927.1| putative DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|332007771|gb|AED95154.1| DNA polymerase eta subunit [Arabidopsis thaliana]
Length = 588
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 14/271 (5%)
Query: 96 VIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVG---FGPDNND 152
V+++L++ S ERASIDE Y+DLTD E M + + +L + V+ G + D
Sbjct: 20 VVSILAK-SGKCERASIDEVYLDLTDAA-ESMLADAPPESLELIDEEVLKSHILGMNRED 77
Query: 153 EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIA 212
D K V W+ + +D L L+ +IV E+R VL +T+F CSAGIA
Sbjct: 78 GDDFKESVRNWICREDADRRDKL---------LSCGIIIVAELRKQVLKETEFTCSAGIA 128
Query: 213 HNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLE 272
HNK+LAKL G++KP +Q+++P ++V L ++L IKK++ LGGKLG + L T+ +
Sbjct: 129 HNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGD 188
Query: 273 LEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDV 332
L +FS +LQ H+ T +WL+ IARGI E V RL+ KS G K FPG L + V
Sbjct: 189 LLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTV 248
Query: 333 SHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
HW+ +L++E+ ERL DL NKR A LT+
Sbjct: 249 QHWLNQLSEELSERLGSDLEQNKRIASTLTL 279
>gi|348670497|gb|EGZ10319.1| hypothetical protein PHYSODRAFT_522191 [Phytophthora sojae]
Length = 527
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 142/458 (31%), Positives = 219/458 (47%), Gaps = 92/458 (20%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R+I +D+DCFY QVE + G+P+AV Q+ G ++AVNY+AR GV R
Sbjct: 9 TRVIIHLDLDCFYAQVEQRRLKIPDGQPVAVQQW-----GSLLAVNYDARKFGVERGDFV 63
Query: 63 DEAKQHCPEIELCRVPSV-------------RGKADISKYRNAGREVIAVLSEFSNIVER 109
D+AK+ CP+I L V ++ KA + +YR A RE+ A+L + I+E+
Sbjct: 64 DDAKKKCPQIHLPHVDTLGENRKPGQLFDRTHQKAILRRYRVASREIFAILGSMAPIIEK 123
Query: 110 ASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYS 169
ASIDEA++D+T++ +R+ V F D + D ++
Sbjct: 124 ASIDEAFMDVTEMATQRLAQ-------------TVNFCQDPANHDTKRL----------- 159
Query: 170 DTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQK 229
L I VI EIR A+ SK + CS G+A NK+LAKL L+KP
Sbjct: 160 ---------------LCIGAVISREIRQAIYSKLGYTCSTGVAGNKLLAKLASPLNKPNG 204
Query: 230 QSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETL-----QCSTMLELEKFSLKQLQSH 284
Q ++ V+ L +L ++KVR LGGKLG + +ET + S L++ L +L H
Sbjct: 205 QVVVAPRFVADLMKSLPMRKVRGLGGKLGKQ-LETAKDAFKKLSAHTFLQRCGLAELTKH 263
Query: 285 FEEKTASWLYYIARGID-HEPVNARLVS-KSIGCCKRFPGKTCLATRQDVSHWIQELADE 342
++TA++++ I +G D +EPV + V K +GC +W++ L +E
Sbjct: 264 VGQETAAYVHQICQGDDGNEPVEEKKVQVKMLGC-----------------YWVRLLCEE 306
Query: 343 VCERLEDDLTLNKRRAQLLTVSFTQETDG-KVNSCSRSIALASYKLQDIVEVSMQVINKT 401
+ R ED+ NKR LT+ FT+ G + +C IA + ++ +M V+
Sbjct: 307 MVMRCEDERVENKRFPSQLTIQFTRAKPGDRPRTCKLGIA-QDTTVDELYAAAMNVMRLH 365
Query: 402 NSAPPISDLTPPLLFLGLSASKFSPLGSHP--SIQQFF 437
D PL L + A F L S +I FF
Sbjct: 366 ------LDSVFPLAALSMHAKNFHDLDSQAVTTISSFF 397
>gi|224075345|ref|XP_002304597.1| predicted protein [Populus trichocarpa]
gi|222842029|gb|EEE79576.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 118/279 (42%), Positives = 162/279 (58%), Gaps = 28/279 (10%)
Query: 95 EVIAVLSEFSNIVERASIDEAYIDLTDVVH--------ERMKSIGHIAASQLSNTFVVGF 146
+V+++L+ ERASIDE Y+DLTD E ++SI + + ++G
Sbjct: 2 QVVSILAR-KGRCERASIDEVYLDLTDSAEAMLRETPPESLESINE----ESRKSHILGL 56
Query: 147 GPDNNDEDARKA--GVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQ 204
EDA A V +WL + SD N +D + LA +IV E+R VL +TQ
Sbjct: 57 ----KSEDANDAQENVSKWLRR--SDA------NHQD-KLLACGALIVSELRMEVLKETQ 103
Query: 205 FHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVET 264
F CSAGIAHNK+LAKLV G++KP +Q+++P SSV L +L IKK++ LGGKLG +
Sbjct: 104 FTCSAGIAHNKMLAKLVSGMNKPAQQTVVPSSSVKGLLESLPIKKMKQLGGKLGTSLQTD 163
Query: 265 LQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKT 324
L ST+ +L +FS ++LQ F T +WL+ IARGI+ E V RL+ KS G K FPG
Sbjct: 164 LGVSTVGDLLQFSEEKLQERFGINTGTWLWSIARGINGEEVQGRLLPKSHGAGKSFPGPR 223
Query: 325 CLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
L T V HW+ +L DE+ ER+ DL NK+ A TV
Sbjct: 224 ALKTIASVQHWLNQLCDELNERICCDLDQNKQIAHTFTV 262
>gi|378730434|gb|EHY56893.1| DNA polymerase eta subunit [Exophiala dermatitidis NIH/UT8656]
Length = 663
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 191/394 (48%), Gaps = 47/394 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IALID D FY Q E +PLAV Q+ G+IA+NY AR G+ RH+
Sbjct: 51 RVIALIDYDAFYAQCEMVRLGVSETQPLAVQQWQ-----GLIAINYPARAFGLNRHVTVT 105
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF-- 103
EAK CPE+ + V + R K + YR R +A+L E
Sbjct: 106 EAKTKCPELVVQHVATWREGDDKWAYRDDAARHIHTDKVSLDPYRLESRRTLALLKEILP 165
Query: 104 ---SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK--- 157
VE+ASIDE ++DL+ +H+ + L + + P ++ +
Sbjct: 166 PPPVQKVEKASIDEVFLDLSAQIHQIL----------LERYPELRYAPYDDPTEPLPLPP 215
Query: 158 AGVMEWLGQVYSDTDTSLMENTEDFQE---LAIAGVIVEEIRAAVLSKTQFHCSAGIAHN 214
+ + W D D + E+ + + + I +V +R + + ++ CSAGIA N
Sbjct: 216 STALNWHADALVDLDLAETEDDDPDWDDVAMNIGAEVVRGVRQTIYDRLKYTCSAGIARN 275
Query: 215 KVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELE 274
K++AKL G KP +Q+I+ +V + K+R+LGGKLGD VV+T + EL
Sbjct: 276 KMMAKLGAGYKKPNQQTIVRNRAVQHFLSGFKFTKIRNLGGKLGDHVVDTFGTDEVTELL 335
Query: 275 KFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSH 334
++QL++ + T +WLY I RG D+ VN+R KS+ K F + + T + +
Sbjct: 336 AIPIEQLKARLGDDTGTWLYGIIRGEDNSEVNSRTQIKSMLSAKSF--RPSINTVEQANR 393
Query: 335 WIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQ 367
W++ ++ RL E+ +T NKRR + +T+ Q
Sbjct: 394 WLRIFVADIYARLVEEGVTENKRRPKTITLHHRQ 427
>gi|296419283|ref|XP_002839244.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635259|emb|CAZ83435.1| unnamed protein product [Tuber melanosporum]
Length = 627
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 193/387 (49%), Gaps = 44/387 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E K + PLAV Q+ + +IAVNY AR V+RH
Sbjct: 29 RVIAHIDLDAFYAQCEMKRLGTDENTPLAVQQWQS-----LIAVNYPAREFNVSRHSTAV 83
Query: 64 EAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEFSNIV 107
+A + CP+++L V + R KA + YR ++++++ V
Sbjct: 84 DALKVCPQLKLVHVATWRSGDEHWGYRENPDIVTCKACLDPYRIESKKIMSIFRAACLRV 143
Query: 108 ERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQV 167
E+ASIDE+++DL+ +VHER+ L V+ P +ND + E L
Sbjct: 144 EKASIDESFLDLSVMVHERL----------LKRFPVLILPPPHNDPAEKLPLPPEGLEIK 193
Query: 168 YSDTDTSLMENTEDFQE--------LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
++ + L+E ED E + +A IVEE+R +V + + CSAGIA NK+LAK
Sbjct: 194 WARS--HLLELAEDCDEQLDWDDVGMGVAAEIVEEVRTSVRKELGYTCSAGIAQNKLLAK 251
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLK 279
L G KP +Q+I+ + K+R+LGGKLG+ + E + L L+
Sbjct: 252 LGSGYKKPNQQTIVRIRAAQRFLNTFKFTKLRNLGGKLGERISEEFGTEELSSLLDTPLQ 311
Query: 280 QLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQEL 339
LQ + TA+W+Y I RGID VN R + KS+ K F + + T S W+
Sbjct: 312 ALQLKLNDDTATWVYNIIRGIDKSEVNPRTLIKSMLSAKSF--RPYITTADAGSKWLTIF 369
Query: 340 ADEVCERLEDDLTL-NKRRAQLLTVSF 365
++ R+E++ + KRR + +T+++
Sbjct: 370 ISDIYSRMEEEGVMEGKRRPKTMTLNY 396
>gi|358393445|gb|EHK42846.1| hypothetical protein TRIATDRAFT_33108 [Trichoderma atroviride IMI
206040]
Length = 662
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 186/379 (49%), Gaps = 39/379 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E KPLAV Q+ G+IAVNY AR G+ RH
Sbjct: 39 RVIAHIDLDAFYAQCEMIRLGVAEDKPLAVQQWQ-----GLIAVNYPARKWGIGRHCNVA 93
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEFS- 104
EAK+ CP++ V + R K + YR R+++A + E
Sbjct: 94 EAKKLCPDLIAQHVATWREGDDKWAYRDDAAANIATDKVSLDPYRLQSRKILATIKESLP 153
Query: 105 ---NIVERASIDEAYIDLTDVVH-ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGV 160
VE+ASIDE ++DL+ +H E ++ +++ S G + A
Sbjct: 154 RDLQKVEKASIDEVFLDLSAQIHAELLRRFPELSSPPPS-------GDVSEPLPFPSAAA 206
Query: 161 MEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAHNKVLA 218
+EW D + D+ ++AI IV +RA V K + CSAGIA+NK+++
Sbjct: 207 LEWQNDNLIDLEEDEEAVDPDWDDVAILIGSEIVRRVRAQVREKLGYTCSAGIANNKLVS 266
Query: 219 KLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSL 278
KL KP +Q+++ +V + + + K+R+LGGKLGD+VV T ++ EL L
Sbjct: 267 KLGSAFKKPNEQTVVRNRAVMLFLTEIKVTKMRNLGGKLGDQVVSTFGTESIKELRDIPL 326
Query: 279 KQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQE 338
+Q ++ E+TA W Y RGIDH VN+R KS+ K F + + + + + W++
Sbjct: 327 EQFKAKLGEETAIWFYNTIRGIDHSEVNSRTQIKSMLSAKSF--RPLIKSSEQATKWLRI 384
Query: 339 LADEVCERLEDDLTLNKRR 357
A ++ RL ++ L +R
Sbjct: 385 FAGDIYSRLVEEGILEHKR 403
>gi|342878015|gb|EGU79426.1| hypothetical protein FOXB_10011 [Fusarium oxysporum Fo5176]
Length = 1648
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/449 (30%), Positives = 216/449 (48%), Gaps = 67/449 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E KPLAV Q+ G+IAVNY AR G+ RH +
Sbjct: 44 RVIAHIDLDAFYAQCETVRLGIPEDKPLAVQQWQ-----GLIAVNYPAREFGIGRHCNVE 98
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEFSN 105
EAK+ CPE+ + V + R K + YR R+++A + E
Sbjct: 99 EAKKLCPELIVQHVATWREGDDKWAYREDAAAHIATDKVSLDHYRLQSRKILACIKEALP 158
Query: 106 I----VERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR- 156
+ VE+ASIDE ++DL+ H ER +LSN P D+
Sbjct: 159 LDLQKVEKASIDEVFLDLSSQTHLILLERFP--------ELSN-------PPPYDDPTEN 203
Query: 157 ----KAGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAG 210
++W D D D+ ++AI IV ++RA V K + CSAG
Sbjct: 204 LPLPSIAALDWQTDALIDLDEEQETVDPDWDDVAILIGSEIVRKVRAEVRQKLGYTCSAG 263
Query: 211 IAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTM 270
+A NK+L+KL KP KQ+++ +VS A I K+R+LGGKLG+++V T ++
Sbjct: 264 VASNKLLSKLGSAYKKPNKQTVVRNRAVSAFMAGFKITKLRNLGGKLGEQIVSTFNTESV 323
Query: 271 LELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQ 330
+EL L +++ T+ W+Y RGID VN+R KS+ K F + + + +
Sbjct: 324 IELLDVPLATMKTKLGHDTSFWIYNTIRGIDTSEVNSRTQIKSMLSAKSF--RPTINSSE 381
Query: 331 DVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQD 389
+ W++ A ++ RL E+ + NKRR + T++ +G+V SRS + ++ D
Sbjct: 382 QATRWLRIFAADIFARLVEEGVLENKRRPR--TMNLHHRREGQVR--SRSGPIPQGRIID 437
Query: 390 ---IVEVS----MQVINKTNSAPPISDLT 411
+ E++ +Q+I + P ++L+
Sbjct: 438 EGSLFELAKDLLLQIIAEGRGVWPCANLS 466
>gi|398406126|ref|XP_003854529.1| hypothetical protein MYCGRDRAFT_38315 [Zymoseptoria tritici IPO323]
gi|339474412|gb|EGP89505.1| hypothetical protein MYCGRDRAFT_38315 [Zymoseptoria tritici IPO323]
Length = 678
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 125/400 (31%), Positives = 192/400 (48%), Gaps = 59/400 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+D FY Q E PLAV Q+ G+IA+NY AR G+ RH+
Sbjct: 39 RVIAHVDLDAFYAQCEMVRLDVDRDTPLAVQQWQ-----GLIAINYPARAYGLNRHVTIT 93
Query: 64 EAKQHCPEIELCRVPSVRGKAD-------------------ISKYRNAGREVIAVLSEF- 103
EAK+ CPEI +C+ + + D + YR R+++A++ EF
Sbjct: 94 EAKEKCPEI-ICQHVATWKEGDAKWSYSEDAWKEIATRKVSLDPYRIESRKILAIIKEFL 152
Query: 104 ---SNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR 156
VE+ASIDE ++DL+ VH ER + GP D+
Sbjct: 153 PADKQRVEKASIDEVFLDLSAHVHFILLERYPEL---------------RGPPPYDDPTE 197
Query: 157 K-----AGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIRAAVLSKTQFHCS 208
++W D DTS E + D+ ++ IA IV ++R A+ + ++ CS
Sbjct: 198 PLPRPPTTALDWKADALVDLDTSQSEEDDPDWDDIVMLIASEIVRDVRKAIWEQLKYTCS 257
Query: 209 AGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCS 268
AG++ NK+LAKL G KP Q+I+ +V + K+R+LGGKLGDEVV
Sbjct: 258 AGLSRNKMLAKLGSGHKKPNSQTIIRNRAVQHFLSGFKFTKIRNLGGKLGDEVVAAFNTD 317
Query: 269 TMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLAT 328
T+ EL ++Q++ + T WL+ I RG D+ VN R KS+ K F + + +
Sbjct: 318 TVSELLPVPVEQMKKQLGDDTGMWLHSIIRGEDNSEVNPRTQIKSMLSAKSF--RPSINS 375
Query: 329 RQDVSHWIQELADEVCERLEDDLTL-NKRRAQLLTVSFTQ 367
+ W++ ++ RL ++ L NKRR + LT+ Q
Sbjct: 376 FEVACRWLRIFVADIFGRLVEEGVLDNKRRPKTLTIHHRQ 415
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 878 DHSQMTSATKADFIKESGDPNNEMCKSTVQFHSNSINKGNGNADVSPMDTVDIINTIADS 937
D QM S ++ + ++ + ++M +S Q+ S SP + ++ I+
Sbjct: 534 DEGQMGSMSREETQEDDLEHADDMPQSAQQYSS-----------YSPTERTSSLSRISGG 582
Query: 938 STVDSAINIADPTKIICDKCSQPIDINELQEHQDYHFALEL----STTSEPPNSTSNISN 993
+ D+A++ D IC +C Q + E EH D+HFA +L ST+++PP
Sbjct: 583 PS-DNALDDTDDNTFICPRCRQAMPQAERPEHDDFHFAQDLQNQESTSAQPPQPKPQSEL 641
Query: 994 SSSSSKILNK-KSSKRGRPS 1012
+S+S+ K K+ RGRP+
Sbjct: 642 ASASAPASGKLKAKGRGRPA 661
>gi|384246648|gb|EIE20137.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
Length = 772
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 115/367 (31%), Positives = 190/367 (51%), Gaps = 29/367 (7%)
Query: 26 LHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRG--- 82
+ G P +Q W+G +IA+NY AR G+TRHMR EA+ CPE++ V ++ G
Sbjct: 1 MRGHPWQRLQLQ-WEG--LIAINYAARAAGITRHMRVHEARALCPELQCVHVETIGGDEL 57
Query: 83 ---------KADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLTDVVHERMKSIG 131
KA + +YR A E++AVL + + ++E+ASIDE Y+D+T +V ++
Sbjct: 58 VDTKDRTKQKACLERYRKACIEILAVLHKAAPQAVIEKASIDEVYMDVTTMVERELRERA 117
Query: 132 HIAASQLSNTFVVGFGPDNNDEDARKAGV--MEWLGQVYSDTDTSLMENTEDFQELAIAG 189
+ + + T G +D +A + V W G V + +E + L+I
Sbjct: 118 QADSCREAETGEGGA----HDWEAGGSPVDAFSWGGIVLGGGPLDV--GSEFERRLSIGA 171
Query: 190 VIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKK 249
I +R AV + F CSAGIA NK+LAK+ ++KP +Q+I+P +V + +L +KK
Sbjct: 172 NIACRLRGAVRDQLGFTCSAGIAANKLLAKVASAMNKPNQQTIVPPRAVDEMMRDLPLKK 231
Query: 250 VRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARL 309
+R+ GGKLG E+ + C T ++ QL + F E+ A+ + RG EPV +
Sbjct: 232 LRNFGGKLGAELA-AMGCVTAGQVSALPHGQLTARFGEERAAGIARAVRGYSDEPVQVKE 290
Query: 310 VSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQET 369
++KS+ K F + A ++ W++ LADE+ RL +D + R + L++S+
Sbjct: 291 LAKSMLAAKSFNATSAPA---ELDRWLRILADELSHRLTEDGLTHSRAPRTLSLSYRGSN 347
Query: 370 DGKVNSC 376
+ C
Sbjct: 348 GDRSKCC 354
>gi|322709529|gb|EFZ01105.1| sister chromatid cohesion protein Eso1 [Metarhizium anisopliae
ARSEF 23]
Length = 651
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 193/387 (49%), Gaps = 55/387 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E KPLAV Q+ G+IAVNY AR G+ RH
Sbjct: 41 RVIAHIDLDAFYAQCEMLRLGVPEDKPLAVQQWQ-----GLIAVNYPARAWGIGRHCNVA 95
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF-- 103
EAK+ CP++ V + R K + YR R+++A++ +
Sbjct: 96 EAKKLCPDLIAQHVATWREGDDKWAYRDDAAASIATDKVSLDPYRLESRKILALIRDTLP 155
Query: 104 SNI--VERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK 157
N+ VE+ASIDE ++DL+ VH ER +LSN P D+ A +
Sbjct: 156 PNLQKVEKASIDEVFLDLSAHVHTILLERF--------PELSN-------PPPYDDLAER 200
Query: 158 A-----GVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAG 210
++W D D D+ ++AI IV +RA V + + CSAG
Sbjct: 201 LPLPSIAALDWKADALVDLDEDQESQDPDWDDVAILIGSEIVRNVRAQVRGRLGYTCSAG 260
Query: 211 IAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTM 270
IA+NK+++KL G KP Q+++ +V + A+ + K+R+LGGKLG+ VV T ++
Sbjct: 261 IANNKMVSKLGSGFKKPNSQTVVRSRAVHLFLADFKVTKIRNLGGKLGERVVSTYSTQSI 320
Query: 271 LELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQ 330
+L + SL+ ++S ++T SWL+ RGID+ V++R KS+ K F + ++T +
Sbjct: 321 KDLLEVSLEHMKSKLGDETGSWLHDTLRGIDNSEVSSRTQIKSMLSAKSF--RPSISTEE 378
Query: 331 DVSHWIQELADEVCERLEDDLTLNKRR 357
W++ ++ RL ++ L+ RR
Sbjct: 379 QALKWLRIFVGDIFSRLGEEGVLDNRR 405
>gi|310794025|gb|EFQ29486.1| impB/mucB/samB family protein [Glomerella graminicola M1.001]
Length = 637
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 126/399 (31%), Positives = 191/399 (47%), Gaps = 44/399 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E +PLAV Q+ G+IAVNY AR G+ RH
Sbjct: 41 RVIAHIDLDAFYAQCEMVRLGVPKDQPLAVQQWQ-----GLIAVNYPAREYGIGRHCTLP 95
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEFS- 104
+AK+ CP + V + R K + YR R ++ V+ E
Sbjct: 96 DAKKLCPTLVAQHVATWREGDDKWAYRHDAAVNIQSDKVSLDPYRLQSRRILGVIKESLP 155
Query: 105 ---NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGV- 160
+E+ASIDE ++DL+ VH SI +L+N D+ ED + V
Sbjct: 156 PDIQKIEKASIDEVFLDLSAQVH----SILLERFPELANPPPY----DDPTEDLPRPSVA 207
Query: 161 -MEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAHNKVL 217
++W D D D+ ++AI IV +R +L + Q+ CSAGIA NK+L
Sbjct: 208 ALDWQADALVDLDEEQESVDPDWDDVAILIGSEIVRHVRGQILERLQYTCSAGIAKNKLL 267
Query: 218 AKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFS 277
+KL G KP +Q+++ +V+ + K+R+LGGKLG+ VV T + EL
Sbjct: 268 SKLGSGHKKPNQQTVIRNRAVTHFLSGFKFTKIRNLGGKLGENVVSTFNTDAVRELLDIP 327
Query: 278 LKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQ 337
L Q+++ T +W+Y RGID VN+R KS+ K F + + T + W++
Sbjct: 328 LDQMKAKLGHDTGNWVYDTIRGIDTSEVNSRTQIKSMLSAKSF--RPYINTPEQAIRWLR 385
Query: 338 ELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNS 375
A ++ RL E+ + NKRR + T++ DG+ S
Sbjct: 386 IFAADIFARLIEEGVLENKRRPR--TINLHHRHDGQTKS 422
>gi|380490518|emb|CCF35959.1| impB/mucB/samB family protein [Colletotrichum higginsianum]
Length = 640
Score = 176 bits (445), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 144/497 (28%), Positives = 230/497 (46%), Gaps = 56/497 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+D FY Q E +PLAV Q+ G+IAVNY AR +G+ RH
Sbjct: 41 RVIAHVDLDAFYAQCEMVRLGVPKDQPLAVQQWQ-----GLIAVNYPARERGIGRHCTLT 95
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF-- 103
+A++ CP + V + R K + YR R+++AV+ E
Sbjct: 96 DARKLCPTLVAQHVATWREGDEKWAYRDDAAANIQSDKVSLDPYRLECRKILAVIKESLP 155
Query: 104 SNI--VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAG-- 159
S++ VE+ASIDE ++DL+ VHE + +L+N P +D G
Sbjct: 156 SDLQKVEKASIDEVFLDLSAQVHEILLR----RFPELANP------PPYDDPTENLPGPS 205
Query: 160 --VMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAHNK 215
++W D + D+ ++AI IV +R + + Q+ CSAGIA NK
Sbjct: 206 VAALDWQADALVDLNEEEESMDPDWDDVAILIGSEIVRHVRGQIFERLQYTCSAGIAKNK 265
Query: 216 VLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEK 275
+L+KL G KP +Q+++ +VS + K+R+LGGKLG+ VV T + EL
Sbjct: 266 LLSKLGSGHKKPNQQTVIRNRAVSHFLSGFKFTKIRNLGGKLGENVVSTFNTDAVSELLA 325
Query: 276 FSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
L+Q+++ T SW++ RGID VN+R KS+ K F + + T + W
Sbjct: 326 IPLEQMKAKLGHDTGSWVHNTIRGIDLSEVNSRTQIKSMLSAKSF--RPYINTPEQAVRW 383
Query: 336 IQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALA-SYKLQDIVEV 393
++ A ++ RL E+ + NKRR + T++ DG+ S I + Q + E+
Sbjct: 384 LRIFAADIFARLVEEGVLENKRRPR--TINLHHRHDGQTKSRQGPIPQGKTLDEQALFEL 441
Query: 394 SMQVINKTNSAPPISDLTPPLLFLGLSASKFS-PLGSHPSIQQFFKPQDHPEPM--TSEH 450
+ ++N+ + I P L LS F + + I F + + + TS
Sbjct: 442 AKSLMNQIMTEGSIW----PCANLSLSVGGFEDGVTGNMGIGAFLLKGEEAQALRQTSRE 497
Query: 451 SSLPEQSTNHDSKKRDK 467
+S P S S KR +
Sbjct: 498 ASRPSTSEEKPSSKRQR 514
>gi|302921584|ref|XP_003053312.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734252|gb|EEU47599.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 683
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/401 (31%), Positives = 194/401 (48%), Gaps = 48/401 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E + KPLAV Q+ G+IAVNY AR G+ RH D
Sbjct: 46 RVIAHIDLDAFYAQCEMVRLGTPEDKPLAVQQWQ-----GLIAVNYPARESGIGRHCNVD 100
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEFS- 104
EAK+ CP++ V + R K + YR R+++A + +
Sbjct: 101 EAKKLCPDLIAQHVATWREGDDKWAYRDDAAANIATDKVSLDPYRLQSRKILATIKDALP 160
Query: 105 ---NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR----K 157
VE+ASIDE ++DL+ +H SI +L N P +D R
Sbjct: 161 HDLQKVEKASIDEVFLDLSSQIH----SILLERFPELKNP------PPYDDPTERLPLPS 210
Query: 158 AGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAHNK 215
++W D D D+ ++AI IV ++RA V + CSAG+A NK
Sbjct: 211 IVALDWQTDALVDLDEEQETIDPDWDDVAILIGSEIVRDVRAKVRQDLGYTCSAGVASNK 270
Query: 216 VLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEK 275
+L+KL G KP KQ+++ +VS + I K+R+LGGKLG+++V T ++ EL +
Sbjct: 271 LLSKLGSGYKKPNKQTVVRNRAVSSFLSGFKITKLRNLGGKLGEQIVSTFNTESLTELLE 330
Query: 276 FSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
L ++S T W++ RGID VN+R KS+ K F + + +++ W
Sbjct: 331 VPLATIKSKLGHDTGLWIHNTIRGIDTSEVNSRTQIKSMLSAKSF--RPTINSQEQAVRW 388
Query: 336 IQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNS 375
++ ++ RL E+ + NKRR + T++ +G+V S
Sbjct: 389 LRIFVADIFARLVEEGVLENKRRPR--TINLHHRHEGQVKS 427
>gi|389646325|ref|XP_003720794.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae 70-15]
gi|86196643|gb|EAQ71281.1| hypothetical protein MGCH7_ch7g688 [Magnaporthe oryzae 70-15]
gi|351638186|gb|EHA46051.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae 70-15]
gi|440479415|gb|ELQ60186.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae P131]
Length = 668
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 199/405 (49%), Gaps = 50/405 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I+ ID+D FY Q E +PLAV Q+ G+IAVNY AR G++RH D
Sbjct: 48 RVISHIDLDAFYAQCEMVRLGVDEDRPLAVQQWQ-----GLIAVNYPARKFGISRHCAID 102
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSE--- 102
+A + CPE+++ V + R K + YR R ++A++ E
Sbjct: 103 DALKLCPELQVQHVATWREGDNTWAYRGDAAANIATDKVSLDPYRLQSRTILALIKECLP 162
Query: 103 -FSNIVERASIDEAYIDLTDVVHERM-KSIGHIAASQLSNTFVVGFGPDNNDEDAR---- 156
VE+ASIDE +IDL+ VH ++ + +A+ P D AR
Sbjct: 163 PHQCKVEKASIDEVFIDLSANVHSKLIERFPELASP-----------PPGADAQARLPLP 211
Query: 157 KAGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAH 213
++W + D + E + D+ ++A IA I +IR + ++ ++ CSAG+A
Sbjct: 212 PVSALDWQADALIELDETETETDDPDWDDIALLIASEITRDIRQTIFTRLKYTCSAGVAG 271
Query: 214 NKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL 273
NK+L+KL KP +Q+++ +V ++ K+R+LGGKLGD+VV ++ +L
Sbjct: 272 NKLLSKLGSAHKKPNQQTVIRGRAVRKFLSDFKFTKIRNLGGKLGDQVVAAFGTESVSDL 331
Query: 274 EKFSLKQLQSHF-EEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDV 332
+ L QL+ EE TA W+Y RGID+ VN+R KS+ K F + + +
Sbjct: 332 LEVPLDQLKLRLGEESTALWVYNTIRGIDNSEVNSRTQIKSMLSAKSF--RPSIHSVDQA 389
Query: 333 SHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNSC 376
+ W++ + ++ RL E+ + NKRR + + + K SC
Sbjct: 390 NKWLRIFSADIFSRLVEEGVLENKRRPKTMNLHHRHNGQSKARSC 434
>gi|326429234|gb|EGD74804.1| hypothetical protein PTSG_12528 [Salpingoeca sp. ATCC 50818]
Length = 984
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/429 (28%), Positives = 205/429 (47%), Gaps = 35/429 (8%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I +D+D FY QVE +P L GKPLAV Q W+G +IA++Y + GVTR M +
Sbjct: 19 RVIMHVDLDAFYAQVEHHRHPELDGKPLAVQQ---WRG--LIAIDYLCKAAGVTRFMNME 73
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT-DV 122
EAK+ CP+I+ V V GKA + YR A R+++A+ +F + E+A +DEAY+D+T +
Sbjct: 74 EAKRVCPDIQFVHVDIVHGKASLEPYRRASRDIMAIFEQF-GVCEKAGMDEAYLDVTKEA 132
Query: 123 VHER---------MKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDT 173
V R + +I + + G ++D +G +
Sbjct: 133 VRRREQCPTSIQQLMQAKYIVPGEFTFKVFCKEGATHDDLLLGSLASSRVIGFAHGLLGR 192
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
+ED L + E+R AV + + SAGI+H+K++AK+ G +KP Q+I+
Sbjct: 193 GWKPTSEDDWLLVEGAAVAAELRVAVYERLGYVVSAGISHSKLMAKVGSGHNKPGHQTII 252
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCS--------------TMLE-LEKFSL 278
P + + A L I +V L GK+G V LQ S ++E +L
Sbjct: 253 PHYAARPMLAKLPISRVPQLHGKMGRAVKLALQESRGEHWRYQALSSREVLVEDCLGLTL 312
Query: 279 KQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQE 338
+ L S + A+W++ RG D V+ + +S+ K + T + HW+
Sbjct: 313 EYLASKLGREAATWVHAFLRGHDTRAVHPKGPPRSLLEAKST--SKAMTTYPALRHWVGN 370
Query: 339 LADEVCERLEDDLTLNKRRAQLLTVSFTQE-TDGKVN-SCSRSIALASYKLQDIVEVSMQ 396
L + ER+ DD N R + + V + ++ T G+ + +C R +A ++Q + +
Sbjct: 371 LCFGLAERILDDHARNNRWPKSIVVQYRKKHTYGEFSRTCGRVVAATKAEVQTQYDALVG 430
Query: 397 VINKTNSAP 405
+ + AP
Sbjct: 431 GGGRRDDAP 439
>gi|398405964|ref|XP_003854448.1| hypothetical protein MYCGRDRAFT_11773, partial [Zymoseptoria
tritici IPO323]
gi|339474331|gb|EGP89424.1| hypothetical protein MYCGRDRAFT_11773 [Zymoseptoria tritici IPO323]
Length = 479
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 147/466 (31%), Positives = 211/466 (45%), Gaps = 53/466 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IALID D FY Q E KPLAV Q+ IIA+NY AR G+ R M D
Sbjct: 36 RVIALIDFDAFYAQCETVRLELPADKPLAVQQWR-----AIIALNYPARDHGLKRGMPVD 90
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF-- 103
E K+ CP I L V + R KA + YR R+ A++
Sbjct: 91 EVKRLCPSIHLQHVATWREGEASWAYRSDQDKHMSNDKAALEPYRIESRKAFALIESCLP 150
Query: 104 ---SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGV 160
+ ++E+ASIDE Y+DL+ VH+ + + + + A
Sbjct: 151 VTSTVLLEKASIDEMYLDLSTYVHD-------VLLDRYPELLISSRDTEGQYLPLPPATS 203
Query: 161 MEWL-GQVYSDTDTSLMENTEDFQELAI---AGVIVEEIRAAVLSKTQFHCSAGIAHNKV 216
++W + D SL D+ +A+ AGVI E+R V SK + SAGIA NK+
Sbjct: 204 LDWQEDNILGDQAQSL-----DWDAVAMNIGAGVI-RELRHTVHSKLHYTASAGIASNKM 257
Query: 217 LAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKF 276
LAKL G KP Q+IL V ++L KK+R LGG+LG V E +T+ +L
Sbjct: 258 LAKLGAGCKKPNNQTILRTRDVPEFLSSLKYKKIRGLGGQLGTAVEEAFNVTTVADLLPV 317
Query: 277 SLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWI 336
SLKQ+Q+ +W+Y + RG +H V+ R + +S+ K F +A + SHW+
Sbjct: 318 SLKQMQTLLGADEGTWIYNVIRGREHSEVSTRKLPQSMLSQKTF--TPAIANIEKASHWL 375
Query: 337 QELADEVCERLE--DDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVS 394
+ A E+ +R+ D TL +R L G S +I+ S D++
Sbjct: 376 RMFAAELYDRVVALDTPTLRRRPRTLAVNHHINGRFGPTRSRQATISTGSTMSADLIYEL 435
Query: 395 MQVINKTNSAPPISDLTPPLLFLGLSASKFSPLGSHP-SIQQFFKP 439
+ SA +S P LG+ S F L + SI FFKP
Sbjct: 436 ASSKLREISAEAVSW---PCAALGVVLSNFVELDTQSLSITTFFKP 478
>gi|358060048|dbj|GAA94107.1| hypothetical protein E5Q_00754 [Mixia osmundae IAM 14324]
Length = 628
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 222/473 (46%), Gaps = 65/473 (13%)
Query: 4 RIIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IA D+D Y Q E L+PSL P+AV Q+ G+IA+NY AR G+TRH
Sbjct: 39 RVIAHCDIDAAYSQFEIVRLGLDPSL---PVAVQQWQ-----GLIAINYPARKFGITRHE 90
Query: 61 RGDEAKQHCPEIELCRVPS------VRG----------KADISKYRNAGREVIAVLSEFS 104
EAK+ CP + L V + V G K + YR ++++ + +
Sbjct: 91 TPIEAKKKCPHLILVHVATYMDSQPVSGYYDNPRPETHKVSLDPYRRESQKILKIFGDLC 150
Query: 105 NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVME-W 163
++E+ASIDEA++D T V + M L ++ PDN DE W
Sbjct: 151 PLIEKASIDEAFLDFTAPVRQLM----------LERYPILAQPPDNLDEPLPPPPTTLPW 200
Query: 164 --LGQVYSDTDTSLMENTED----FQELAIA--GVIVEEIRAAVLSKTQFHCSAGIAHNK 215
LG + D T+D +Q++A+A ++E+ R V ++ + CSAGIA NK
Sbjct: 201 SELGNLIP-VDPDAPPETDDEPITWQDVALALGAEMMEKCRKEVYTQLGYTCSAGIAKNK 259
Query: 216 VLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEK 275
+L+KL KP Q++L ++V L +K+R LGGKLGD + + ST+ +L
Sbjct: 260 MLSKLCSAWKKPNAQTVLRDTAVHNFLKPLKFQKIRFLGGKLGDSLANEYESSTVGDLWS 319
Query: 276 FSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
SL++LQ ++ W + I RGID V + +KS+ K F K + D ++W
Sbjct: 320 VSLQELQRKLGNESGMWCWEIIRGIDLTEVQPKAATKSMLSSKNF--KPAINKWADGAYW 377
Query: 336 IQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIA--------LASYK 386
++ A E+ RL E ++ + +T++F +N SRS L++
Sbjct: 378 LRVSATELAARLNEQRESVPGIWPKTITLNFRD-----INYVSRSKQCAFPYSNNLSADY 432
Query: 387 LQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPLGS-HPSIQQFFK 438
+ I E ++ S P +T P LGL+ + + S IQ FFK
Sbjct: 433 VFKITERLLKEFQNEGSKPDDGSMT-PATSLGLAFNGLERVASGQAGIQDFFK 484
>gi|406861269|gb|EKD14324.1| impB/mucB/samB family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 717
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 192/411 (46%), Gaps = 51/411 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+D FY Q E KPLAV Q+ G+IA+NY AR G+ RH+
Sbjct: 43 RVIAHVDLDAFYAQCEMVRLGIEEDKPLAVQQWQ-----GLIAINYPARAFGLARHVTPI 97
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIA----VLS 101
EAK+ CP+I L V + R K + YR R ++ L
Sbjct: 98 EAKKLCPDIILQHVATWREGDEKWAYRDDAASNIATDKVSLDPYRLESRRILKCIKDALP 157
Query: 102 EFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR----- 156
E VE+ASIDE ++DL+ +H + L + GP D+
Sbjct: 158 EKYRKVEKASIDEVFMDLSAQIH-----------ATLLERYEELRGPAPYDDPTELLPLP 206
Query: 157 KAGVMEWLGQVYSDTDTSLMENTE-DFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAH 213
V++W D D E + D+ ++AI I+ ++RAAV + ++ CS G+A
Sbjct: 207 PTTVLDWKADALVDLDVDETEEDDPDWDDVAILIGSEIIRDVRAAVRTHLKYTCSGGVAQ 266
Query: 214 NKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL 273
NK+LAKL KP +Q+I+ ++ + K+R GGK+GD + T+ +L
Sbjct: 267 NKMLAKLGSAHKKPNQQTIIRNRAIQQFLSEFKFTKIRGFGGKMGDSITAAFNTDTVQDL 326
Query: 274 EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVS 333
+ QL+ + T +W+Y I RG + VN+R KS+ K F + + T + +
Sbjct: 327 LAVPIDQLKQKLGDDTGTWVYEIIRGKESSEVNSRTAIKSMLSAKSF--RPSINTAEQAN 384
Query: 334 HWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALA 383
W++ A ++ RL E+ + NKRR + T++ + G+ S S I+L
Sbjct: 385 RWLRIFAADIYSRLVEEGVLENKRRPK--TINLHHRSGGQTKSRSSPISLG 433
>gi|440634992|gb|ELR04911.1| hypothetical protein GMDG_00170 [Geomyces destructans 20631-21]
Length = 641
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/389 (29%), Positives = 193/389 (49%), Gaps = 43/389 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E KPLAV Q+ + +IAVNY AR G++R +
Sbjct: 42 RVIAHIDLDAFYAQCEMVRLGVPEDKPLAVQQWQS-----LIAVNYPARKFGISRMITAK 96
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEFS- 104
EA++ CP+ L V + + K + YR R+++A + E
Sbjct: 97 EARKLCPDAILQHVATWKEGDVKWAYHKDASANMATHKVSLDPYRLESRKILACMKECLP 156
Query: 105 ---NIVERASIDEAYIDLTDVVHE-RMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGV 160
VE+A IDE ++DL+ VH + +++ + + P V
Sbjct: 157 PDLQRVEKAGIDEVFLDLSAQVHTILLDRYPELSSPPKDLSEFLPLPPTT---------V 207
Query: 161 MEWLGQVYSDTDTSLMENTEDFQE---LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVL 217
++W D D S E+ + + + + IV ++RAAV + ++ CS GIAHNK+L
Sbjct: 208 LDWQADALVDLDASETEDDDPDWDDVAILLGSEIVRDVRAAVSEQLKYTCSGGIAHNKML 267
Query: 218 AKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFS 277
+KL KP +Q+++ ++ ++ K+R+LGGKLG ++V+T + T+ L +
Sbjct: 268 SKLGSAHRKPNQQTVIRNRAIQQFLSDFKFTKIRNLGGKLGTQIVDTFETDTVSGLLEVP 327
Query: 278 LKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQ 337
+++L+ ++T SW+Y RGID VN+R KS+ K F + + +R+ S W++
Sbjct: 328 VERLKQKLGDETGSWVYQTIRGIDQSEVNSRTQIKSMLSAKSF--QPSINSREQASRWLR 385
Query: 338 ELADEVCERL-EDDLTLNKRRAQLLTVSF 365
++ RL E+ + NKRR + + + F
Sbjct: 386 IFVGDIYARLVEEGVLENKRRPKTINLHF 414
>gi|408392199|gb|EKJ71557.1| hypothetical protein FPSE_08196 [Fusarium pseudograminearum CS3096]
Length = 737
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 194/402 (48%), Gaps = 50/402 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E +PLAV Q+ G+IAVNY AR G+ RH +
Sbjct: 97 RVIAHIDLDAFYAQCEIVRLGIPEDRPLAVQQWQ-----GLIAVNYAAREHGIGRHCNVE 151
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF-- 103
EAK+ CPE+ V + R K + YR R+++A + +
Sbjct: 152 EAKKLCPELIAQHVATWREGDDKWAYRDDAAANIVTDKVSLDPYRLQSRKILACIKDALP 211
Query: 104 --SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKA--- 158
VE+ASIDE ++DL+ V +SI +LSN P D+ K
Sbjct: 212 ADVQKVEKASIDEVFLDLSSQV----RSILLERFPELSN-------PPPYDDPTEKLPLP 260
Query: 159 --GVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAHN 214
++W D + D+ ++AI IV ++R+ V K + CSAG+A N
Sbjct: 261 SIAALDWQTDALIDLNEEQEAIDPDWDDVAILIGSEIVRKVRSEVRQKLGYTCSAGVASN 320
Query: 215 KVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELE 274
K+L+KL KP KQ+++ +VS A + K+R+LGGKLG+++V T + EL
Sbjct: 321 KLLSKLGSAYKKPNKQTVVRNRAVSAFMAGFKVTKLRNLGGKLGEQIVSTFNTENVTELL 380
Query: 275 KFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSH 334
+ L +++ T W++ RGID VN+R KS+ K F + + + + +
Sbjct: 381 EVPLSSMKAKLGHDTGFWVFNTIRGIDTSEVNSRTQIKSMLSAKSF--RPTINSSEQATR 438
Query: 335 WIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNS 375
W++ A ++ RL E+ + NKRR + T++ +G+V S
Sbjct: 439 WLRIFAADIFARLVEEGVLENKRRPK--TMNLHHRHEGQVRS 478
>gi|428179324|gb|EKX48195.1| DNA polymerase eta, replication coupled repair, partial [Guillardia
theta CCMP2712]
Length = 242
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 149/262 (56%), Gaps = 29/262 (11%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
+ +R+I IDMD FY QVE + +PLAV Q W+G +IAVNY AR +G+TRHM
Sbjct: 9 LVNRVILHIDMDAFYAQVEHRRTGISREEPLAVQQ---WEG--LIAVNYPARARGITRHM 63
Query: 61 RGDEAKQHCPEIELC-RVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
R +EAK+ CP++ L + + K + +YRNA EV VL ++ IVE+ASIDEAYID+
Sbjct: 64 RVEEAKKICPDLHLVHKRDDLPRKVSLERYRNASMEVFEVLQQYG-IVEKASIDEAYIDV 122
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
T V+ + I F + ND D K G+ E + + +T+
Sbjct: 123 TKTVNNLYRRI---------------FDLEQNDAD--KHGLNE-TNDRFDEINTA---KE 161
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
ED + L + VI + RA VL T F CS GI+HNK+L+KL HKP +Q+I+P V
Sbjct: 162 EDLK-LLLGAVICQAARAGVLEHTSFTCSGGISHNKMLSKLASARHKPNQQTIVPVQGVQ 220
Query: 240 MLYANLSIKKVRHLGGKLGDEV 261
L L +K +R LGGK G+++
Sbjct: 221 SLMEQLPLKNIRGLGGKFGNQL 242
>gi|212534508|ref|XP_002147410.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
marneffei ATCC 18224]
gi|210069809|gb|EEA23899.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
marneffei ATCC 18224]
Length = 673
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 139/493 (28%), Positives = 222/493 (45%), Gaps = 71/493 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E + PLAV Q+ + +IA+NY AR G+TR +
Sbjct: 42 RVIAHIDLDAFYAQCEMVRLGTPRDTPLAVQQWES-----LIAINYAARPFGITRMLSAI 96
Query: 64 EAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVLSE-- 102
EAK+ CPE+ L V + R K + YR R +++ + E
Sbjct: 97 EAKKRCPELVLQHVATFREGEGGRWAYRDDASYKIKTDKVSLDPYRAQSRRILSTIKEEV 156
Query: 103 ----------------FSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVG 145
F +E+AS+DE +IDL+ +V+ + + + TF
Sbjct: 157 SRQRDEILSSKDVPLEFQAAKIEKASVDEVFIDLSSLVYAVLYQ-RYPELRRAPTTF--- 212
Query: 146 FGPDNNDEDARKAGVMEWL---GQVYSDTDTSLMENTEDFQELA--IAGVIVEEIRAAVL 200
+EW G V D + E+ D+ ++A I I IRA +
Sbjct: 213 --DKTTSLPTPPTTALEWFPEDGLVDLD-ERETEEDDPDWDDVAMLIGAEITRSIRAVIW 269
Query: 201 SKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDE 260
K + CSAGIA NK+++KL +KP KQ+I+ ++ K+R LGGKLG+
Sbjct: 270 DKLSYTCSAGIARNKMMSKLGSAQNKPNKQTIIRNRAIQKFLGGFQFTKIRWLGGKLGER 329
Query: 261 VVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRF 320
+ + EL SL Q ++ ++ TA W+Y I RG+D VN R KS+ K F
Sbjct: 330 ISAEFGTEEVKELLNVSLDQFKAKLDDDTAVWVYNIIRGVDDSEVNPRTQIKSMLSAKSF 389
Query: 321 PGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNSCSRS 379
+ + + W++ A ++ RL ED L NKRR T+S +V+S S
Sbjct: 390 --RPSINSADQARKWLRIFAADLYNRLVEDGLLENKRRPT--TLSLHHRMGAQVHSKSTP 445
Query: 380 IALASYKLQDIV-EVSMQVINKTNS---APPISDLTPPLLFLGLSASKFSPLGSHPSIQQ 435
I +DI+ E++ ++N+ + A P ++L+ + ++ + P+ + +I
Sbjct: 446 IPGGKMVTEDILYELASNLLNQVIAEARAWPCANLS-----INVTGFEEGPVNNR-AIDS 499
Query: 436 FFKPQDHPEPMTS 448
FF P D +P S
Sbjct: 500 FFAP-DQSKPFVS 511
>gi|440471150|gb|ELQ40183.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae Y34]
Length = 679
Score = 169 bits (428), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 199/411 (48%), Gaps = 51/411 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWK------GGGIIAVNYEARHKGVT 57
R+I+ ID+D FY Q E +PLAV Q+ G+IAVNY AR G++
Sbjct: 48 RVISHIDLDAFYAQCEMVRLGVDEDRPLAVQQWYVLALTFDATRQGLIAVNYPARKFGIS 107
Query: 58 RHMRGDEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAV 99
RH D+A + CPE+++ V + R K + YR R ++A+
Sbjct: 108 RHCAIDDALKLCPELQVQHVATWREGDNTWAYRGDAAANIATDKVSLDPYRLQSRTILAL 167
Query: 100 LSE----FSNIVERASIDEAYIDLTDVVHERM-KSIGHIAASQLSNTFVVGFGPDNNDED 154
+ E VE+ASIDE +IDL+ VH ++ + +A+ P D
Sbjct: 168 IKECLPPHQCKVEKASIDEVFIDLSANVHSKLIERFPELASP-----------PPGADAQ 216
Query: 155 AR----KAGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIRAAVLSKTQFHC 207
AR ++W + D + E + D+ ++A IA I +IR + ++ ++ C
Sbjct: 217 ARLPLPPVSALDWQADALIELDETETETDDPDWDDIALLIASEITRDIRQTIFTRLKYTC 276
Query: 208 SAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC 267
SAG+A NK+L+KL KP +Q+++ +V ++ K+R+LGGKLGD+VV
Sbjct: 277 SAGVAGNKLLSKLGSAHKKPNQQTVIRGRAVRKFLSDFKFTKIRNLGGKLGDQVVAAFGT 336
Query: 268 STMLELEKFSLKQLQSHF-EEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCL 326
++ +L + L QL+ EE TA W+Y RGID+ VN+R KS+ K F + +
Sbjct: 337 ESVSDLLEVPLDQLKLRLGEESTALWVYNTIRGIDNSEVNSRTQIKSMLSAKSF--RPSI 394
Query: 327 ATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNSC 376
+ + W++ + ++ RL E+ + NKRR + + + K SC
Sbjct: 395 HSVDQANKWLRIFSADIFSRLVEEGVLENKRRPKTMNLHHRHNGQSKARSC 445
>gi|429862856|gb|ELA37463.1| sister chromatid cohesion protein eso1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 656
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 125/427 (29%), Positives = 201/427 (47%), Gaps = 49/427 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++A ID+D FY Q E +PLAV Q+ G+IAVNY AR G+ RH
Sbjct: 41 RVVAHIDLDAFYAQCEMVRLGVPKDQPLAVQQWQ-----GLIAVNYPAREHGIGRHCTLT 95
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEFS- 104
EAK+ CP + V + R K + YR R+++AV+ E
Sbjct: 96 EAKKMCPNLISQHVATWREGDDKWAYRDDAAANIQSDKVSLDPYRLQSRKILAVIKESLP 155
Query: 105 ---NIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK 157
VE+ASIDE ++DL+ VH ER +G+ + + +
Sbjct: 156 QDLQKVEKASIDEVFLDLSAQVHSVLLERFPELGNPPP----------YDDPTENLPSPP 205
Query: 158 AGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAHNK 215
++W D + D+ ++AI IV ++R VL K + CSAG+A NK
Sbjct: 206 VSALDWQADALIDLNEEEESMDPDWDDVAILIGSEIVRDVRRQVLEKLFYTCSAGVAKNK 265
Query: 216 VLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEK 275
+L+KL G KP +Q+++ +V + K+R+LGGKLG+ VV T + EL
Sbjct: 266 LLSKLGSGHKKPNQQTVIRNRAVDQFLSGFKFTKMRNLGGKLGENVVTTFNTDAVSELLP 325
Query: 276 FSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
L Q+++ +T +W+Y RGID+ VN+R KS+ K F + + T + W
Sbjct: 326 ILLDQMKAKLGHETGTWVYNTIRGIDNSEVNSRTQIKSMLSAKSF--RPYINTPEKAVRW 383
Query: 336 IQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALA-SYKLQDIVEV 393
++ ++ RL E+ + NKRR + T++ G++ S I S Q ++E+
Sbjct: 384 LRIFVADIFARLVEEGVLENKRRPR--TINLHHRHAGQMKSRQGPIPQGRSLDEQTLLEL 441
Query: 394 SMQVINK 400
+ ++N+
Sbjct: 442 AKSLLNQ 448
>gi|425772364|gb|EKV10771.1| Sister chromatid cohesion protein (Eso1), putative [Penicillium
digitatum PHI26]
gi|425774774|gb|EKV13074.1| Sister chromatid cohesion protein (Eso1), putative [Penicillium
digitatum Pd1]
Length = 646
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 138/507 (27%), Positives = 229/507 (45%), Gaps = 71/507 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E + PLAV Q+++ +IA+NY AR GV+R +
Sbjct: 34 RVIAHIDLDAFYAQCEMVRLGTSREIPLAVRQWDS-----LIAINYAARAFGVSRLINVA 88
Query: 64 EAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVL---- 100
EA++ CP++ L V + R K + YR R ++ +
Sbjct: 89 EARKLCPDLVLQHVATFREGEGGRWAYRDDSFRNISTDKVSLDPYRAQSRRILQTMKEAL 148
Query: 101 ----------------SEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 144
E S +VE+ASIDE +IDL+ +++ A Q +
Sbjct: 149 ATWNADGVGVETQNPKQELSAVVEKASIDEVFIDLSPLIYR--------ALLQRYPELRM 200
Query: 145 GFGPDNNDED--ARKAGVMEWLGQVYSDTDT-SLMENTEDFQE--LAIAGVIVEEIRAAV 199
G +N D + ++W D D E+ D+ + + I IV +R+AV
Sbjct: 201 GIPNENRDAELPVPPTTALQWNTDCLVDLDKHETEEDDPDWDDVVMLIGSEIVRSVRSAV 260
Query: 200 LSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGD 259
K + CSAG+ NK++AKL +KP Q+++ +V ++R LGGKLGD
Sbjct: 261 WEKLSYTCSAGLGRNKMIAKLGSACNKPNLQTVVRNRAVQNFLGGYKFTQIRMLGGKLGD 320
Query: 260 EVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKR 319
++ + EL L+QL++ ++TA+WLY I RG D VN R KS+ K
Sbjct: 321 QITAAFGTEKVSELLNAPLEQLRTKLADQTATWLYGIIRGEDRSEVNPRTQIKSMLSAKS 380
Query: 320 FPGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSF-TQETDGKVNSCS 377
F + + + W++ A ++ RL ED + N+RR +++T+ T ++ + +
Sbjct: 381 F--RPSINSLDQAEKWLRIFAADIYGRLVEDGVLENRRRPKVITMHHRTAQSRSRQIPIA 438
Query: 378 RSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFS-PLGSHPSIQQF 436
S A+ L D+ ++ + A P S+L+ LS S F + ++ +I+ F
Sbjct: 439 SSSAIDENLLYDLANSLLRQVVADGQAWPCSNLS-------LSVSSFEDGVSNNKAIEGF 491
Query: 437 FKPQDHPEPMTSEHSSLPEQSTNHDSK 463
D + ++ HSS P N S+
Sbjct: 492 LIRGDQAKALS--HSSRPRDIDNSPSE 516
>gi|347837334|emb|CCD51906.1| similar to transcription factor Zn, C2H2 [Botryotinia fuckeliana]
Length = 668
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 193/391 (49%), Gaps = 49/391 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+D FY QVE KPLAV Q+ G+IA+NY AR G+ RH+
Sbjct: 43 RVIAHLDLDAFYAQVEMVRLGIEEDKPLAVQQWQ-----GLIAINYPARAFGLNRHITIT 97
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAV----LS 101
EAK+ CP++ V + R K + YR + ++A L
Sbjct: 98 EAKKLCPDLICQHVATWREGDEKWAYHNDAFKNIATHKVSLDPYRLESKRILACIKDCLP 157
Query: 102 EFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGV- 160
+ IVE+AS+DE ++DL+ +H + L + GP D+ + +
Sbjct: 158 KHLQIVEKASVDEVFMDLSAQIH-----------ATLLERYPELKGPAPYDDLTEQLPLP 206
Query: 161 ----MEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAH 213
++W D D + E + D+ ++A I IV +RAA+ K ++ CSAG+A
Sbjct: 207 PTTFLDWKADALVDLDKNEAETDDPDWDDIAMLIGSEIVRTVRAAIREKLKYTCSAGVAQ 266
Query: 214 NKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL 273
NK+L+KL KP +Q+++ ++ + K+R+LGGK G+EVV+ + +L
Sbjct: 267 NKMLSKLGSAHKKPNQQTVIRNRAIQQFLSGFKFTKIRNLGGKTGEEVVKLFNTDMVNDL 326
Query: 274 EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVS 333
++QL+ E+T +W+Y + RGID VN+R KS+ K F + + T + +
Sbjct: 327 LLVPVEQLKQKLGEETGTWVYNVIRGIDVSDVNSRTQIKSMLSAKSF--RPSINTPEQAN 384
Query: 334 HWIQELADEVCERL-EDDLTLNKRRAQLLTV 363
W++ A ++ RL E+ + NKRR + + +
Sbjct: 385 RWLRIFAADIQSRLVEEGVLENKRRPKTINL 415
Score = 40.8 bits (94), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 950 TKIICDKCSQPIDINE-LQEHQDYHFALEL-----STTSEPPNSTSNISNSSSSSKILNK 1003
T+ +C +C+Q +D E Q HQD+HFA +L S + P + S+ S +SK K
Sbjct: 593 TEFLCTRCNQALDCAEAFQSHQDWHFAKDLHDEDRSRRTPPAPTPSSASKRGVASK---K 649
Query: 1004 KSSKRG-RPSKLNS 1016
+ + RG RP K S
Sbjct: 650 RGNGRGSRPEKGQS 663
>gi|336264622|ref|XP_003347087.1| hypothetical protein SMAC_05386 [Sordaria macrospora k-hell]
gi|380093781|emb|CCC08745.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 672
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 190/387 (49%), Gaps = 41/387 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+DCFY QVE KP+AV Q+ G+IAVNY AR G+ RH
Sbjct: 44 RVIAHLDLDCFYAQVEMVRLGIPDDKPVAVQQWQ-----GLIAVNYPARGFGIGRHCNVS 98
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSE--- 102
EAK+ CP++ V + R K + YR R ++A++ E
Sbjct: 99 EAKKLCPDLIHQHVATWREGDAKWDYHPDAAANMATHKVSLDPYRLESRRILAIIKEELP 158
Query: 103 -FSNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK 157
VE+ASIDE ++DL+ VH ER + + + P D R
Sbjct: 159 PHLQKVEKASIDEVFMDLSAQVHAILLERFPELANPPPYDDPTEMLPM--PSITALDWRA 216
Query: 158 AGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVL 217
+++ G+ + L + D + I IV ++R A+ K + CSAG+A NK+L
Sbjct: 217 DALVDLPGE-----NAELEDPDWDDVAILIGSEIVRKVRIAIKDKLGYTCSAGVACNKLL 271
Query: 218 AKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFS 277
+KL KP +Q+++ SV ++ K+R+LGGKLG+++ + T+ +L S
Sbjct: 272 SKLGSAYRKPNQQTVIRNRSVQHFLSDFKFTKMRNLGGKLGEQISQIYHTDTVKDLLGVS 331
Query: 278 LKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQ 337
++QL+S + T W+Y RGID+ VN R+ KS+ K F + +AT + W++
Sbjct: 332 VEQLKSKLGDDTGVWVYNTVRGIDNSEVNPRVQIKSMLSAKSF--RPSIATFEQGVRWLR 389
Query: 338 ELADEVCERL-EDDLTLNKRRAQLLTV 363
A ++ RL E+ + NKRR + + +
Sbjct: 390 IFAADIFSRLVEEGVLENKRRPKTINL 416
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 16/104 (15%)
Query: 935 ADSSTVDSAINI------ADPTKII---CDKCSQPID-INELQEHQDYHFALELSTTSEP 984
A S VD A + +P II C +C+ +D ELQ HQD+HFA EL
Sbjct: 569 AGSEGVDKADEVYNGNSEPEPGPIITLTCSRCNASLDSPEELQSHQDWHFAKELQEQERV 628
Query: 985 PNSTSNISNSSSSSKILNKKSS-----KRGRPSKLNSFKNSENF 1023
+ N S+SSS++ N+KS+ ++GRP K+ ++ F
Sbjct: 629 SQTFVN-QPSASSSRVDNQKSTSTTPKRQGRPKKVERGQSKLKF 671
>gi|46130620|ref|XP_389090.1| hypothetical protein FG08914.1 [Gibberella zeae PH-1]
Length = 684
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 193/402 (48%), Gaps = 50/402 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E +PLAV Q+ G+IAVNY AR G+ RH +
Sbjct: 44 RVIAHIDLDAFYAQCEIVRLGIPEDRPLAVQQWQ-----GLIAVNYAAREYGIGRHCNVE 98
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF-- 103
EAK+ CPE+ V + R K + YR R+++A + +
Sbjct: 99 EAKKLCPELIAQHVATWREGDDKWAYRDDAAANIVTDKVSLDPYRLQSRKILACIKDALP 158
Query: 104 --SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKA--- 158
VE+ASIDE ++DL+ V +SI +LSN P D+ K
Sbjct: 159 ADVQKVEKASIDEVFLDLSSQV----RSILLERFPELSN-------PPPYDDPTEKLPLP 207
Query: 159 --GVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAHN 214
++W D + D+ ++AI IV ++R+ V K + CSAG+A N
Sbjct: 208 SIAALDWQTDALIDLNEEQEAIDPDWDDVAILIGSEIVRKVRSEVRQKLGYTCSAGVASN 267
Query: 215 KVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELE 274
K+L+KL KP KQ+++ +VS A + K+R++GGKLG+++V T + EL
Sbjct: 268 KLLSKLGSAYKKPNKQTVVRNRAVSAFMAGFKVMKLRNMGGKLGEQIVSTFNTENVTELL 327
Query: 275 KFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSH 334
+ L +++ T W++ RGID VN R KS+ K F + + + + +
Sbjct: 328 EVPLSSMKAKLGHDTGFWVFNTIRGIDTSEVNPRTQIKSMLSAKSF--RPTINSSEQATR 385
Query: 335 WIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNS 375
W++ A ++ RL E+ + NKRR + T++ +G+V S
Sbjct: 386 WLRIFAADIFARLVEEGVLENKRRPK--TMNLHHRHEGQVRS 425
>gi|70998010|ref|XP_753737.1| sister chromatid cohesion protein (Eso1) [Aspergillus fumigatus
Af293]
gi|66851373|gb|EAL91699.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
fumigatus Af293]
gi|159126527|gb|EDP51643.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
fumigatus A1163]
Length = 672
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 199/426 (46%), Gaps = 77/426 (18%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E + PLAV Q+++ +IA+NY AR G++R M
Sbjct: 43 RVIAHIDLDAFYAQCEMVRLGTPKEAPLAVRQWDS-----LIAINYPARSFGISRMMSAS 97
Query: 64 EAKQHCPEIELCRVPSVR----GKADISK---------------YRNAGREVIAVLSE-- 102
EA++HCPEI L V + R GK K YR R+++ V+ E
Sbjct: 98 EAQKHCPEIVLQHVATFREGEGGKWAYRKDAFKNISTDKVCLDPYRAESRKILKVMKEEL 157
Query: 103 --------------FSNI------VERASIDEAYIDLTDVVHE---------RMKSIGHI 133
+S+ +E+ASIDE +IDL+ +V+ R++ G
Sbjct: 158 SRWHAGLVDSEHEPYSHYQVQPSSLEKASIDEVFIDLSSLVYALLLQRYPELRIEPQGDG 217
Query: 134 AASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQELA--IAGV 190
++ L + N ED D D + E + D+ ++A I
Sbjct: 218 RSTPLPRPPTTAL--EWNTED------------CLIDLDENETEVDDPDWDDIAMLIGSE 263
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
IV +R AV +K + CS G+A NK++AKL +KP KQ+I+ ++ + K+
Sbjct: 264 IVRSVRTAVWNKLSYTCSGGVARNKMMAKLGSACNKPNKQTIVRNRAIQNFLGSFKFTKI 323
Query: 251 RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLV 310
R LGGKLGD+V + +L L+Q ++ F++ TASWLY I RG D VN R
Sbjct: 324 RMLGGKLGDQVATLFGTEQVSDLLLVPLEQFRAKFDDATASWLYGIIRGEDKSEVNPRTQ 383
Query: 311 SKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQET 369
KS+ K F + + + W++ A ++ RL ED + N+RR + T++
Sbjct: 384 IKSMLSAKSF--RPSINSADQAEKWLRIFAADIYGRLVEDGVLENRRRPK--TIALHHRQ 439
Query: 370 DGKVNS 375
G+V S
Sbjct: 440 GGQVRS 445
>gi|453085241|gb|EMF13284.1| DNA/RNA polymerase, partial [Mycosphaerella populorum SO2202]
Length = 696
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 187/399 (46%), Gaps = 57/399 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E +PLAV Q+ G+IA+NY AR G+ RH+
Sbjct: 30 RVIAHIDLDAFYAQCEMVRLGIDKDQPLAVQQWQ-----GLIAINYPARAYGLNRHVTIT 84
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF-- 103
EAK+ CP+I V + + K + YR R+++ + +
Sbjct: 85 EAKEKCPDIICQHVATWKEGNATWEYADDAFKEIAIRKVSLDPYRIESRKILKCIKDTLP 144
Query: 104 --SNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK 157
VE+ASIDE ++DL+ VH ER + GP D+ +
Sbjct: 145 ADKQRVEKASIDEVFLDLSAQVHGILLERYPGLK---------------GPPPYDDPSEP 189
Query: 158 -----AGVMEWLGQVYSDTDTSLMENTE-DFQELAI--AGVIVEEIRAAVLSKTQFHCSA 209
V++W D D E + D+ ++ + A IV ++RAAV + + SA
Sbjct: 190 LPKPPTTVLDWKADALVDLDEKYTEEDDPDWDDIVVLLASEIVRDVRAAVFKQLNYTMSA 249
Query: 210 GIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCST 269
GI+ NK+LAKL G KP Q+++ +V + K+R LGGKLGD++V T
Sbjct: 250 GISRNKMLAKLGSGHKKPNSQTVIRNRAVQHFLSGYKFTKIRSLGGKLGDQIVAAFNTDT 309
Query: 270 MLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATR 329
+ EL S++QL+ ++T SWLY I RG D+ VN R KS+ K F + + +
Sbjct: 310 VAELLPVSVEQLKKQLGDETGSWLYDILRGEDNSEVNPRTQIKSMLSAKSF--RPSINSF 367
Query: 330 QDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQ 367
W++ ++ RL E+ + NKRR + + + Q
Sbjct: 368 DVACKWLRIFVSDIYGRLVEEGVLENKRRPKSINIHHRQ 406
>gi|358385031|gb|EHK22628.1| hypothetical protein TRIVIDRAFT_191350 [Trichoderma virens Gv29-8]
Length = 654
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/406 (30%), Positives = 191/406 (47%), Gaps = 48/406 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++A ID+D FY Q E KPLAV Q+ G+IAVNY AR + RH
Sbjct: 40 RVVAHIDLDAFYAQCEMIRLGVPEDKPLAVQQWQ-----GLIAVNYPARKWEIGRHCNIT 94
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAV----LS 101
EAK+ CPE+ V + R K + YR R+++A+ L
Sbjct: 95 EAKKLCPELIAQHVATWREGDDKWAYRDDAAANIATDKVSLDPYRLQSRKILALVKDSLP 154
Query: 102 EFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK---- 157
+ VE+ASIDE ++DL+ VH S+L F P + + A
Sbjct: 155 KDLQKVEKASIDEVFLDLSAQVH-----------SELLRRFPELSSPPPSGDVAESLPFP 203
Query: 158 -AGVMEWLGQ--VYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHN 214
A ++W V D D ++ D + + IV +RA + K + CSAGIA+N
Sbjct: 204 SAAALDWRNDNLVVLDEDQETLDPDWDDVVILLGSEIVRGVRAEIREKLGYTCSAGIANN 263
Query: 215 KVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELE 274
K+++KL KP Q+++ +V + + K+R+LGGKLGD+VV T ++ EL
Sbjct: 264 KLVSKLGSAFKKPNAQTVVRSRAVLPFLTGIKVTKMRNLGGKLGDQVVSTFGTESVKELR 323
Query: 275 KFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSH 334
L Q+++ ++TA WLY RGID VN+R KS+ K F + + T +
Sbjct: 324 DIPLDQIKAKLGDETAVWLYNTIRGIDLSEVNSRTQIKSMLSAKSF--RPSIKTPEQGIK 381
Query: 335 WIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSI 380
W++ A ++ RL ++ L +R T++ G+ S S SI
Sbjct: 382 WLRIFAGDIYSRLVEEGILEHKRWP-RTINLHHRHAGQTRSKSSSI 426
>gi|346977255|gb|EGY20707.1| sister chromatid cohesion protein Eso1 [Verticillium dahliae
VdLs.17]
Length = 660
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 197/402 (49%), Gaps = 50/402 (12%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+IA ID+D FY Q E +LN + +PLAV Q+ G+IA+NY AR G+ RH
Sbjct: 42 RVIAHIDLDAFYAQCEMVRLN-TPEDQPLAVQQWQ-----GLIAINYPARSFGIGRHCTL 95
Query: 63 DEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF- 103
EA++ CP++ V + R K + YR R ++A++ E
Sbjct: 96 AEARKLCPDLIAQHVATWREGDDKWAYRDDAAANITSDKVSLDPYRLQSRRILALIKETL 155
Query: 104 -SNI--VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR---- 156
S++ VE+ASIDE + DL+ VH SI +L+N P +D R
Sbjct: 156 PSDLQKVEKASIDEVFCDLSAHVH----SILLERFPELNNP------PPYDDPTERLPRP 205
Query: 157 KAGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAHN 214
++W D D D+ ++AI I+ +RA + + CSAGIA+N
Sbjct: 206 PVVALDWQADALIDLDEDAENQDPDWDDVAILIGSEIIRGVRARIHEVLHYTCSAGIANN 265
Query: 215 KVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELE 274
K+L+KL KP +Q+++ ++ ++ K+R+LGGKLGD +V T T+ +L
Sbjct: 266 KMLSKLGSAHKKPNQQTVIRNRAIQQFLSDFKFTKIRNLGGKLGDTIVNTFNTDTVKDLL 325
Query: 275 KFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSH 334
L Q+++ ++T W+Y RGID VN+R KS+ K F + + T +
Sbjct: 326 PTPLDQMKARLGDETGIWVYNTIRGIDQSEVNSRTQIKSMLSAKSF--RPSIHTPDQGNR 383
Query: 335 WIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNS 375
W++ ++ RL E+ + NKRR + T++ DG++ S
Sbjct: 384 WLRIFVADIFSRLVEEGVLENKRRPK--TINLHHRHDGQMKS 423
>gi|145237696|ref|XP_001391495.1| DNA polymerase eta [Aspergillus niger CBS 513.88]
gi|134075969|emb|CAK48163.1| unnamed protein product [Aspergillus niger]
gi|350635582|gb|EHA23943.1| hypothetical protein ASPNIDRAFT_48454 [Aspergillus niger ATCC 1015]
Length = 670
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/418 (30%), Positives = 195/418 (46%), Gaps = 61/418 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E + PLAV Q+++ +IA+NY AR G+TR +
Sbjct: 43 RVIAHIDLDAFYAQCEMVRLRTPRTVPLAVRQWDS-----LIAINYPARSFGITRMISAS 97
Query: 64 EAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVLSE-F 103
EAK+ CPEI L V + R K + YR R+++ V+ E
Sbjct: 98 EAKKLCPEIVLQHVATFREGEGGKWAYRNDAFKRMNTDKVCLDPYRAESRKILKVMKEEL 157
Query: 104 SNI---------------------VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTF 142
S +E+AS+DE +IDL+ +VH + ++L
Sbjct: 158 SRWQRELVGGEHGAGAQSPIQHAGLEKASVDEVFIDLSSLVHGVLLQRYPELRAELQGDD 217
Query: 143 VVGFGPDNNDEDARKAGVMEWLGQ-VYSDTDTSLME-NTEDFQELA--IAGVIVEEIRAA 198
V P +EW + D D + E + D+ ++A I IV +RAA
Sbjct: 218 RVTPLP------VPPTTALEWNSEDCLVDLDENETEVDDPDWDDIAMLIGSEIVRSVRAA 271
Query: 199 VLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLG 258
V + Q+ CSAG+A NK++AKL +KP KQ+I+ +V K+R LGGKLG
Sbjct: 272 VWDRLQYTCSAGVAKNKMMAKLGSSCNKPNKQTIVRNRAVQRFLGGYKFTKIRMLGGKLG 331
Query: 259 DEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCK 318
D+V + +L K SL+Q ++ ++ TA+WLY I RG D VN+R KS+ K
Sbjct: 332 DQVTAMFGTEQVSDLIKVSLEQFRAKLDDDTATWLYGIIRGEDKSEVNSRTQIKSMLSAK 391
Query: 319 RFPGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNS 375
F + + + W+ A ++ RL ED + +KRR + TV+ +V S
Sbjct: 392 SF--RPSINSVDQADKWLSIFAADIFGRLVEDGVLEHKRRPK--TVALHHRQGAQVRS 445
>gi|328768045|gb|EGF78092.1| hypothetical protein BATDEDRAFT_26797 [Batrachochytrium
dendrobatidis JAM81]
Length = 604
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 115/398 (28%), Positives = 193/398 (48%), Gaps = 52/398 (13%)
Query: 4 RIIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+ +D+D FY QVE L P++ PLAV Q+N G+IA+NY AR G+ R
Sbjct: 17 RVFIHLDLDAFYAQVEQVRLGLPPTV---PLAVQQWN-----GMIAINYAAREMGIHRFG 68
Query: 61 RGDEAKQHCPEIELCRV---------------------------PSVRG-KADISKYRNA 92
+AK+ CPE+ L V PS + K + YR A
Sbjct: 69 SIKDAKRTCPELLLVHVWWQLMCFNVNTVATYADGDTEPKYHPNPSQKTHKVSLDVYRQA 128
Query: 93 GREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNND 152
+++ +LS+ + V++ASIDEAY+D+TD V++ ++S G+ + +S + P +
Sbjct: 129 SNKIMDILSKCGSPVKQASIDEAYVDITDYVNKLIES-GYWK-NIMSESHSECKDPQDEQ 186
Query: 153 EDARKAGVM-EWLGQVYSDTDTSLMENTEDFQ----ELAIAGVIVEEIRAAVLSKTQFHC 207
+ G M W DT +++ + + +L + + +R + + + C
Sbjct: 187 QVHSDMGPMVRW----NKDTCSAMGDLVTSYGIFDLQLYLGSRLSASLRKQIFDELGYTC 242
Query: 208 SAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC 267
S GIAH K+LAKLV ++KP KQ++L V + + K+ +GGK G E+++T Q
Sbjct: 243 STGIAHGKILAKLVSSINKPNKQTVLQIEKVPDFMKTIKLSKINGMGGKFGAEIMKTFQV 302
Query: 268 STMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLA 327
+ EL +S +L + +WLY RGID + + + S+S+ CK +
Sbjct: 303 TMAHELWVYSADELVKQLGYEHGTWLYNACRGIDFQKIQGQTKSQSMTACKNLTPN--IH 360
Query: 328 TRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSF 365
+ D +W+ LA E+ R+ + N+R +LL + F
Sbjct: 361 STDDARYWLGILASELYTRVNTEFETNQRWPKLLVLHF 398
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 922 VSPMDTVDIINTIADSSTVDSAINIADPTKIICDKCSQPIDI--NELQEHQDYHFALELS 979
+ P +T + +A S +DS + +I CD+C + ID N +EH D+H A L
Sbjct: 488 ILPDETSSVATPVATGS-LDSPDDYHKEFQIKCDQCGELIDADDNSQREHADFHIAQSLY 546
Query: 980 TTSEPPNSTSNISNSSSSSKIL--NKKSSKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
+S S S S S SK + +KKS+ R + K + N+E F KL FFKP
Sbjct: 547 KSSHTRREPSTASMSGSVSKKIQPDKKSASRTQRRKPGA-ANTEKFTKLTN---FFKP 600
>gi|301093411|ref|XP_002997552.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262110570|gb|EEY68622.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 525
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 188/390 (48%), Gaps = 83/390 (21%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
TSR+I +D+DCFY QVE + G+P+AV Q+ G ++AVNY+AR GV R
Sbjct: 6 TSRVIIHLDLDCFYAQVEQRRLHIPDGQPVAVQQW-----GSLLAVNYDARKFGVERGDF 60
Query: 62 GDEAKQHCPEIELCRVPSV-------------RGKADISKYRNAGREVIAVLSEFSNIVE 108
D+AK+ CP+I L V ++ KA + +YR A R++ A+L I+E
Sbjct: 61 IDDAKKKCPQIHLPHVDTLGKNCKPGQLFDRTHQKAILRRYRIASRDIFAILGSMVPIIE 120
Query: 109 RASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVY 168
+ASIDEA++D+TD+ ER+ V F D + D ++
Sbjct: 121 KASIDEAFMDVTDMAKERIAQ-------------TVYFCQDPANHDTKRL---------- 157
Query: 169 SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQ 228
L I VI EIR A+ +K + CS GIA NK+LAKL L+KP
Sbjct: 158 ----------------LCIGAVISREIRQAIYNKLGYTCSTGIAGNKLLAKLASPLNKPN 201
Query: 229 KQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETL-----QCSTMLELEKFSLKQLQS 283
Q ++ V L +L ++K+R LGGKLG + +ET + S L++ L +L
Sbjct: 202 GQVVVASRFVIDLMKSLPMRKIRGLGGKLGKQ-LETAGESFKKLSAHTFLQRCGLIELAK 260
Query: 284 HFEEKTASWLYYIARGI-DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADE 342
H ++TA++++ I +G D+EPV + V I ++ L +E
Sbjct: 261 HVGQETAAYVHSICQGSDDNEPVEEKKVQVKI-------------------TGVRLLCEE 301
Query: 343 VCERLEDDLTLNKRRAQLLTVSFTQETDGK 372
V R ED+ NKR L++ F + G+
Sbjct: 302 VVIRCEDERIENKRFPSQLSIQFIRAKPGE 331
>gi|451847016|gb|EMD60324.1| hypothetical protein COCSADRAFT_39969 [Cochliobolus sativus ND90Pr]
Length = 716
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 191/400 (47%), Gaps = 56/400 (14%)
Query: 4 RIIALIDMDCFYCQ---VECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IA +D+D FY Q V ++PS KPLAV Q+ G+IA+NY AR G++RH+
Sbjct: 44 RVIAHVDLDAFYAQCETVRLGIDPS---KPLAVQQWQ-----GLIAINYPAREFGLSRHV 95
Query: 61 RGDEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIA---- 98
EA + CP++ L V + + K + YR R+++
Sbjct: 96 TSTEALKQCPDLILQHVATWKEGDENWAYHENSFRDMATHKVSLDPYRKESRKILKCIKD 155
Query: 99 VLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK- 157
+L E VE+ASIDE ++DL+ VH + L + GP D+
Sbjct: 156 ILPEKEQRVEKASIDEVFMDLSAQVH-----------TILLERYPELRGPAPYDDPTEPL 204
Query: 158 ----AGVMEWLGQVYSDTDTSLMENTE-DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAG 210
V++W T E+ + D+ + + IA IV ++R + + CS G
Sbjct: 205 PKVPTTVLDWAADALVGTGEEDGEDRDPDWDDVCMVIASEIVRDVRKHIKDTLGYTCSGG 264
Query: 211 IAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTM 270
+A NK+LAKL G KP +Q+++ +V +++ K+R LGGKLGDEVV T +
Sbjct: 265 VARNKMLAKLGSGYKKPNQQTVIRNRAVKNFLSDMKFTKIRMLGGKLGDEVVSTFGTDKV 324
Query: 271 LELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQ 330
+L + L QL+ E T SWLY RG D+ VN R KS+ K F + + + +
Sbjct: 325 RDLMEQPLDQLKK-LGEDTGSWLYSTIRGEDNSEVNPRTQIKSMLSAKSF--RPSINSFE 381
Query: 331 DVSHWIQELADEVCER-LEDDLTLNKRRAQLLTVSFTQET 369
W++ ++ R +E+ + NKRR + + + Q T
Sbjct: 382 QGVRWLRIFVADIFSRCVEEGVLENKRRPKSINLHHRQGT 421
Score = 41.2 bits (95), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 25/152 (16%)
Query: 861 ESNEVIDQTKIRDV---SSSDHSQMTSATKADFIKESGD--PNNEMCKSTVQFHSNSINK 915
ES E ID + D D + S + GD P N + QF SNS
Sbjct: 550 ESEEDIDAQEDEDALFAGDGDEFERPSTPPLNRYSSHGDIHPPNTPPSAQPQFISNSRPP 609
Query: 916 GNGNADVSPMDTVDIINTIADSSTVDSAINIADPTKIICDKCSQPIDINELQEHQDYHFA 975
GN P + A T+D+ C +C+ + E EH+DYHFA
Sbjct: 610 HQGNEAQPPAPRP---KSPAQQKTMDT---------FFCPRCNIHLPPGEKPEHEDYHFA 657
Query: 976 LELS--------TTSEPPNSTSNISNSSSSSK 999
L+LS T PP+ ++ S+++SK
Sbjct: 658 LDLSREMRQEDRTAVVPPSGATSAKRSATTSK 689
>gi|85111821|ref|XP_964120.1| hypothetical protein NCU01936 [Neurospora crassa OR74A]
gi|28925887|gb|EAA34884.1| hypothetical protein NCU01936 [Neurospora crassa OR74A]
Length = 672
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 193/398 (48%), Gaps = 63/398 (15%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+DCFY QVE KP+AV Q+ G+IAVNY AR G+ RH
Sbjct: 44 RVIAHLDLDCFYAQVEMVRLGIPDDKPVAVQQWQ-----GLIAVNYPARSFGIGRHCNVS 98
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSE--- 102
EAK+ CP++ V + R K + YR R+++A++ E
Sbjct: 99 EAKKLCPDLIHQHVATWREGDAKWDYHPDAAANMATHKVSLDPYRLESRKILAIIKEELP 158
Query: 103 -FSNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK 157
VE+ASIDE ++DL+ VH ER +L+N P D+
Sbjct: 159 PHLQKVEKASIDEVFMDLSAQVHTILLERF--------PELAN-------PPPYDDPTEM 203
Query: 158 AGV-----MEWLGQVYSDTDTSLMENTE----DFQELA--IAGVIVEEIRAAVLSKTQFH 206
+ ++W D EN E D+ ++A I IV ++R A+ K +
Sbjct: 204 LPMPSITALDWQADALVDLPD---ENAELEDPDWDDVAILIGSEIVRKVRIAIKDKLGYT 260
Query: 207 CSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQ 266
CSAG+A NK+L+KL KP +Q++L S+ ++ K+R+LGGKLG+++ +
Sbjct: 261 CSAGVACNKLLSKLGSAYRKPNQQTVLRNRSIQHFLSDFKFTKMRNLGGKLGEQISQMFH 320
Query: 267 CSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCL 326
T+ +L S++QL+S + T W+Y RGID VN R+ KS+ K F + +
Sbjct: 321 TDTVKDLLSASVEQLKSKLGDDTGVWVYNTVRGIDTSEVNPRVQIKSMLSAKSF--RPSI 378
Query: 327 ATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTV 363
+ + W++ A ++ RL E+ + NKRR + + +
Sbjct: 379 TSFEQAVRWLRIFAADIFSRLVEEGVLENKRRPKTINL 416
Score = 42.7 bits (99), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 947 ADPTKII---CDKCSQPID-INELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILN 1002
++P II C +C+ +D ELQ HQD+HFA EL + N S+SSS+ N
Sbjct: 587 SEPGPIITLTCSRCNASLDSPEELQSHQDWHFAKELQEQERVSQTFVN-QPSASSSRAGN 645
Query: 1003 KKSS-----KRGRPSKLNSFKNSENF 1023
+KS+ ++GRP K+ ++ F
Sbjct: 646 QKSTSTMPKRQGRPKKVERGQSKLKF 671
>gi|154309314|ref|XP_001553991.1| hypothetical protein BC1G_07551 [Botryotinia fuckeliana B05.10]
Length = 668
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 115/391 (29%), Positives = 192/391 (49%), Gaps = 49/391 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+D FY QVE KPLAV Q+ G+IA+NY AR G+ RH+
Sbjct: 43 RVIAHLDLDAFYAQVEMVRLGIEEDKPLAVQQWQ-----GLIAINYPARAFGLNRHITIT 97
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAV----LS 101
EAK+ CP++ V + R K + YR + ++A L
Sbjct: 98 EAKKLCPDLICQHVATWREGDEKWAYHNDAFKNIATHKVSLDPYRLESKRILACIKDCLP 157
Query: 102 EFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGV- 160
+ VE+AS+DE ++DL+ +H + L + GP D+ + +
Sbjct: 158 KHLQRVEKASVDEVFMDLSAQIH-----------ATLLERYPELKGPAPYDDLTEQLPLP 206
Query: 161 ----MEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAH 213
++W D D + E + D+ ++A I IV +RAA+ K ++ CSAG+A
Sbjct: 207 PTTFLDWKADALVDLDKNEAETDDPDWDDIAMLIGSEIVRTVRAAIREKLKYTCSAGVAQ 266
Query: 214 NKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL 273
NK+L+KL KP +Q+++ ++ + K+R+LGGK G+EVV+ + +L
Sbjct: 267 NKMLSKLGSAHKKPNQQTVIRNRAIQQFLSGFKFTKIRNLGGKTGEEVVKLFNTDMVNDL 326
Query: 274 EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVS 333
++QL+ E+T +W+Y + RGID VN+R KS+ K F + + T + +
Sbjct: 327 LLVPVEQLKQKLGEETGTWVYNVIRGIDVSDVNSRTQIKSMLSAKSF--RPSINTPEQAN 384
Query: 334 HWIQELADEVCERL-EDDLTLNKRRAQLLTV 363
W++ A ++ RL E+ + NKRR + + +
Sbjct: 385 RWLRIFAADIQSRLVEEGVLENKRRPKTINL 415
Score = 40.8 bits (94), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 950 TKIICDKCSQPIDINE-LQEHQDYHFALEL-----STTSEPPNSTSNISNSSSSSKILNK 1003
T+ +C +C+Q +D E Q HQD+HFA +L S + P + S+ S +SK K
Sbjct: 593 TEFLCTRCNQALDCAEAFQSHQDWHFAKDLHDEDRSRRTPPAPTPSSASKRGVASK---K 649
Query: 1004 KSSKRG-RPSKLNS 1016
+ + RG RP K S
Sbjct: 650 RGNGRGSRPEKGQS 663
>gi|350297199|gb|EGZ78176.1| DNA/RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 672
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 193/398 (48%), Gaps = 63/398 (15%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RIIA +D+DCFY QVE KP+AV Q+ G+IAVNY AR G+ RH
Sbjct: 44 RIIAHLDLDCFYAQVEMVRLGIPDDKPVAVQQWQ-----GLIAVNYPARSFGIGRHCNVS 98
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSE--- 102
EAK+ CP++ V + R K + YR R+++A++ E
Sbjct: 99 EAKKLCPDLIHQHVATWREGDAKWDYHPDAAANMATHKVSLDPYRLESRKILAIIKEELP 158
Query: 103 -FSNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK 157
VE+ASIDE ++DL+ VH ER +L+N P D+
Sbjct: 159 PHLQKVEKASIDEVFMDLSAQVHTILLERF--------PELAN-------PPPYDDPTEM 203
Query: 158 AGV-----MEWLGQVYSDTDTSLMENTE----DFQELA--IAGVIVEEIRAAVLSKTQFH 206
+ ++W D EN E D+ ++A I IV ++R A+ K +
Sbjct: 204 LPMPSITALDWQADALVDLPD---ENAELEDPDWDDVAILIGSEIVRKVRIAIEDKLGYT 260
Query: 207 CSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQ 266
CSAG+A NK+L+KL KP +Q++L S+ ++ K+R+LGGKLG+++ +
Sbjct: 261 CSAGVACNKLLSKLGSAYRKPNQQTVLRNRSIQHFLSDFKFTKMRNLGGKLGEQISQMYH 320
Query: 267 CSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCL 326
T+ +L S++QL+S + T W+Y RGID VN R+ KS+ K F + +
Sbjct: 321 TDTVKDLLSASVEQLKSKLGDDTGVWVYNTVRGIDTSEVNPRVQIKSMLSAKSF--RPSI 378
Query: 327 ATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTV 363
+ + W++ A ++ RL E+ + NKRR + + +
Sbjct: 379 TSFEQAVRWLRIFAADIFSRLVEEGVLENKRRPKTINL 416
Score = 40.8 bits (94), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 947 ADPTKII---CDKCSQPID-INELQEHQDYHFALELSTTSEPPNSTSNISNSSSS---SK 999
++P II C +C+ +D ELQ HQD+HFA EL + N ++SSS ++
Sbjct: 587 SEPGPIITLTCSRCNASLDSPEELQSHQDWHFAKELQEQERVSQTFVNQPSASSSRAGNQ 646
Query: 1000 ILNKKSSKR-GRPSKLNSFKNSENF 1023
I + + KR GRP K+ ++ F
Sbjct: 647 ISTRTTPKRQGRPKKVERGQSKLKF 671
>gi|121713084|ref|XP_001274153.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
clavatus NRRL 1]
gi|119402306|gb|EAW12727.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
clavatus NRRL 1]
Length = 674
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 130/422 (30%), Positives = 197/422 (46%), Gaps = 69/422 (16%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E PLAV Q+++ +IA+NY AR G+TR M D
Sbjct: 44 RVIAHIDLDAFYAQCEMVRLAKPRETPLAVRQWDS-----LIAINYPARSFGITRMMSAD 98
Query: 64 EAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVLSE-- 102
EA++HCPEI L V + R K + YR R+++ E
Sbjct: 99 EARKHCPEIVLQHVATFREGEGGQWAYRDDAFKNISTDKVCLDPYRAESRKILKFTKEEL 158
Query: 103 ---FSNIV-----------------ERASIDEAYIDLTDVVH----ERMKSIGHIAASQL 138
+++V E+ASIDE +IDL+ +V+ +R + A SQ
Sbjct: 159 SRWHADLVDGERGAGAQFQIQPASLEKASIDEVFIDLSPLVYGVLLQRYPELR--AGSQD 216
Query: 139 SNTFVVGFGPDNNDEDARKAGVMEWLGQ-VYSDTDTSLME-NTEDFQELA--IAGVIVEE 194
+ F P +EW + D D + E + D+ ++A I IV
Sbjct: 217 DDRFTPLPRPPTT--------ALEWNPEDCLIDLDENETEVDDPDWDDIAMLIGSEIVRS 268
Query: 195 IRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLG 254
+R V K ++ CS G+A NK++AKL +KP KQ+I+ +V K+R LG
Sbjct: 269 VRKFVWDKLKYTCSGGVARNKMMAKLGSACNKPNKQTIVRNRAVQNFLGGYKFTKIRMLG 328
Query: 255 GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSI 314
GKLGD++ + + +L K S +QL++ ++ TASWLY I RG D VN R KS+
Sbjct: 329 GKLGDQITASFGTEQVSDLLKVSHEQLRAKLDDDTASWLYGIIRGEDKSEVNPRTQIKSM 388
Query: 315 GCCKRFPGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKV 373
K F + + + W++ A ++ RL E+ + N+RR + TVS +V
Sbjct: 389 LSAKSF--RPSINSVDQAEKWLRIFAADIYGRLVEEGVLENRRRPR--TVSLHHRQGAQV 444
Query: 374 NS 375
S
Sbjct: 445 RS 446
>gi|452002715|gb|EMD95173.1| hypothetical protein COCHEDRAFT_1129437 [Cochliobolus
heterostrophus C5]
Length = 717
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 193/400 (48%), Gaps = 56/400 (14%)
Query: 4 RIIALIDMDCFYCQ---VECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IA +D+D FY Q V ++PS KPLAV Q+ G+IA+NY AR G++RH+
Sbjct: 44 RVIAHVDLDAFYAQCETVRLGIDPS---KPLAVQQWQ-----GLIAINYPAREFGLSRHV 95
Query: 61 RGDEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIA---- 98
EA + CP++ L V + + K + YR R+++
Sbjct: 96 TSTEALKQCPDLILQHVATWKEGDENWAYHENSFRDMATHKVSLDPYRKESRKILKCIKD 155
Query: 99 VLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK- 157
+L E VE+ASIDE ++DL+ VH + L + GP D+
Sbjct: 156 MLPEKEQRVEKASIDEVFMDLSAQVH-----------TILLERYPELRGPAPYDDPTEPL 204
Query: 158 ----AGVMEWLGQVYSDTDTSLMENTE-DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAG 210
V++W +T E+ + D+ + +AIA IV ++R + + CS G
Sbjct: 205 PKVPTTVLDWAADALVETGEEDGEDRDPDWDDVCMAIASEIVRDVRKHIKDALGYTCSGG 264
Query: 211 IAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTM 270
+A NK+LAKL G KP +Q+++ +V +++ K+R LGGKLGDEVV +
Sbjct: 265 VARNKMLAKLGSGYKKPNQQTVIRNRAVKHFLSDMKFTKIRMLGGKLGDEVVSIFGTDKV 324
Query: 271 LELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQ 330
+L + L QL+ + T SWLY I RG D+ VN R KS+ K F + + + +
Sbjct: 325 KDLIEQPLDQLKK-LGDDTGSWLYSIIRGEDNSEVNPRTQIKSMLSAKSF--RPSINSFE 381
Query: 331 DVSHWIQELADEVCER-LEDDLTLNKRRAQLLTVSFTQET 369
W++ ++ R +E+ + NKRR + + + Q T
Sbjct: 382 QGVRWLRIFVADIFSRCVEEGVLENKRRPKSINLHHRQGT 421
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 952 IICDKCSQPIDINELQEHQDYHFALELS--------TTSEPPNSTSNISNSSSSSKILNK 1003
C +C+ + +E EH+DYHFAL+LS T PP+ + +S+S K
Sbjct: 635 FFCPRCNIYLPASERPEHEDYHFALDLSREMRQEDRTAVLPPSGAAGGKRGASAS----K 690
Query: 1004 KSSKRGRPSKLNSFKNSE 1021
S RGRP +S + +
Sbjct: 691 PSRGRGRPPGGSSVEKGQ 708
>gi|297678217|ref|XP_002816976.1| PREDICTED: DNA polymerase eta-like isoform 2 [Pongo abelii]
Length = 191
Score = 165 bits (418), Expect = 1e-37, Method: Composition-based stats.
Identities = 82/159 (51%), Positives = 113/159 (71%), Gaps = 5/159 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDARKA 158
ER++ + I+A L +T++ G GP +E +K
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKG 164
>gi|238505178|ref|XP_002383818.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
flavus NRRL3357]
gi|220689932|gb|EED46282.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
flavus NRRL3357]
Length = 673
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 130/460 (28%), Positives = 213/460 (46%), Gaps = 69/460 (15%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+D FY Q E + PLAV Q+++ +IA+NY AR G+TR +
Sbjct: 44 RVIAHVDLDAFYAQCEMVRLQTPREIPLAVRQWDS-----LIAINYPARAFGITRMISAK 98
Query: 64 EAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVLSE-- 102
EA++ CPEI L V + R K + YR R+++ + E
Sbjct: 99 EARKLCPEIVLQHVATFREGEGGKWAYREDSYRRMNTDKVCLDPYRAESRKILKTMKEEL 158
Query: 103 ---FSNI-----------------VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTF 142
++++ VE+AS+DE +IDL+ +V+ + +L N
Sbjct: 159 SRWYTDLVDEERGLGPHAQIQQASVEKASVDEVFIDLSPLVY----GVLLRRYPELRN-- 212
Query: 143 VVGFGPDNNDEDAR----KAGVMEW-LGQVYSDTDTSLME-NTEDFQELA--IAGVIVEE 194
GPD +D A +EW G D D + E + D+ ++A I IV
Sbjct: 213 ----GPDGDDRVASLPRPPTTALEWNQGDCLVDLDENETEVDDPDWDDVAMLIGSDIVRA 268
Query: 195 IRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLG 254
+R V + CSAGIA NK++AKL +KP KQ+I+ ++ + K+R LG
Sbjct: 269 VRTVVWDNLSYTCSAGIAKNKMMAKLGSSSNKPNKQTIVRNRAIQNFLSGFKFTKIRMLG 328
Query: 255 GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSI 314
GKLGD+V + +L + +L+Q ++ ++ TA+WLY I RG D VN R KS+
Sbjct: 329 GKLGDQVTALFGTEQVSDLLQVTLEQFRAKLDDDTANWLYGIIRGEDKSEVNPRTQIKSM 388
Query: 315 GCCKRFPGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQ--ETDG 371
K F + + + + W++ A ++ RL ED + ++RR + L + Q +
Sbjct: 389 LSAKSF--RPSINSVEQAERWLRIFAADIYGRLVEDGVLEHRRRPKTLALHHRQGAQVRS 446
Query: 372 KVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLT 411
+ N S + L DI ++ + A P ++L+
Sbjct: 447 RQNPIPGSTPIDETLLFDIGRTLLRQVIGDGCAWPCANLS 486
>gi|169780638|ref|XP_001824783.1| DNA polymerase eta [Aspergillus oryzae RIB40]
gi|83773523|dbj|BAE63650.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867099|gb|EIT76352.1| DNA polymerase iota/DNA damage inducible protein [Aspergillus
oryzae 3.042]
Length = 673
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 189/403 (46%), Gaps = 66/403 (16%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+D FY Q E + PLAV Q+++ +IA+NY AR G+TR +
Sbjct: 44 RVIAHVDLDAFYAQCEMVRLQTPREIPLAVRQWDS-----LIAINYPARAFGITRMISAK 98
Query: 64 EAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVLSE-- 102
EA++ CPEI L V + R K + YR R+++ + E
Sbjct: 99 EARKLCPEIVLQHVATFREGEGGKWAYREDSYKRMNTDKVCLDPYRAESRKILKTMKEEL 158
Query: 103 ---FSNI-----------------VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTF 142
++++ VE+AS+DE +IDL+ +V+ + +L N
Sbjct: 159 SRWYTDLVDEERGLGPHAQIQQASVEKASVDEVFIDLSPLVY----GVLLRRYPELRN-- 212
Query: 143 VVGFGPDNNDEDAR----KAGVMEW-LGQVYSDTDTSLME-NTEDFQELA--IAGVIVEE 194
GPD +D A +EW G D D + E + D+ ++A I IV
Sbjct: 213 ----GPDGDDRVASLPRPPTTALEWNQGDCLVDLDENETEVDDPDWDDVAMLIGSDIVRA 268
Query: 195 IRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLG 254
+R V + CSAGIA NK++AKL +KP KQ+I+ ++ K+R LG
Sbjct: 269 VRTVVWDNLSYTCSAGIAKNKMMAKLGSSSNKPNKQTIVRNRAIQTFLGGFKFTKIRMLG 328
Query: 255 GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSI 314
GKLGD+V + +L + +L+Q ++ ++ TA+WLY I RG D VN R KS+
Sbjct: 329 GKLGDQVTALFGTEQVSDLLQVTLEQFRAKLDDDTANWLYGIIRGEDKSEVNPRTQIKSM 388
Query: 315 GCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRR 357
K F + + + + W++ A ++ RL +D L RR
Sbjct: 389 LSAKSF--RPSINSVEQAERWLRIFAADIYGRLVEDGVLEHRR 429
>gi|296817667|ref|XP_002849170.1| DNA polymerase eta [Arthroderma otae CBS 113480]
gi|238839623|gb|EEQ29285.1| DNA polymerase eta [Arthroderma otae CBS 113480]
Length = 646
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 200/410 (48%), Gaps = 65/410 (15%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+IA ID+D FY Q E +LN + +PLAV Q+ + +IAVNY AR GV+R +
Sbjct: 37 RVIAHIDLDAFYAQCEMVRLN-TPRDQPLAVQQWQS-----LIAVNYPARPFGVSRMITA 90
Query: 63 DEAKQHCPEIELCRVPSVR-GKADISKYRNAG-----------------REVIAVL---- 100
+EAK+ CP++ V + R G+ + YR G R+++AV+
Sbjct: 91 EEAKKLCPQLLTPHVATFREGEGENWAYREGGYSVQKDKVSLDPYRAESRKILAVMKATL 150
Query: 101 ---------------SEFSNIV--ERASIDEAYIDLTDVVH----ERMKSIGHIAASQLS 139
SE S++V ERA IDE ++DL+ +V +R + + A + S
Sbjct: 151 LSCAEGIYEGCRGQFSEPSDMVRLERAGIDEVFVDLSALVFGTLLQRYEVLRSAEAVECS 210
Query: 140 NTFVVGFGPDNNDEDARKAGVMEWLGQ----VYSDTDTSLMENTE-DFQELAIAGVIVEE 194
+ GF P +A + W G+ + DT S E+ E D + + IV+
Sbjct: 211 TDSLGGFLPRP------EATALVW-GEDDELIDLDTGKSEEEDPEWDDIVMLVGSEIVKS 263
Query: 195 IRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLG 254
IRAAV + ++ CS GIA NK++AKL +KP +Q+I+ ++ + K+R LG
Sbjct: 264 IRAAVWDQLKYTCSGGIARNKMIAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLG 323
Query: 255 GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSI 314
GKLG V + + +L L +L++ ++ T +WLY I RG D V R KS+
Sbjct: 324 GKLGKRVASEFETEKIRDLLNIPLDRLKNKLDDDTGTWLYQIIRGEDDSEVTPRTEIKSM 383
Query: 315 GCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL-NKRRAQLLTV 363
K F K L W++ E+ RL D+ L NKRR +++TV
Sbjct: 384 ISAKSFNPK--LNALDQAERWMRIFVTEIYGRLIDEGVLENKRRPKMITV 431
>gi|115400311|ref|XP_001215744.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191410|gb|EAU33110.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1077
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/422 (30%), Positives = 201/422 (47%), Gaps = 69/422 (16%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E + +PLAV Q+++ +IA+NY AR G+TR +
Sbjct: 455 RVIAHIDLDAFYAQCEMVRLQTPREQPLAVRQWDS-----LIAINYPARAFGITRMITAA 509
Query: 64 EAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVL---- 100
EAK+ CPEI L V + R K + YR R+++ V+
Sbjct: 510 EAKKLCPEIVLQHVATFREGEGGKWAYREDAFRNIGTDKVCLDPYRMESRKILQVMKEEL 569
Query: 101 ---------------SEFS---NIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQL 138
S+F +E+ASIDE +IDL+ +V+ +R + AA Q
Sbjct: 570 SRWHADLLDDERGLGSQFQVEQAALEKASIDEVFIDLSPLVYGVLLQRYPELR--AAPQG 627
Query: 139 SNTFVVGFGPDNNDEDARKAGVMEWLGQ-VYSDTDTSLME-NTEDFQELA--IAGVIVEE 194
+ F P +EW + D D + E + D+ ++A + +V
Sbjct: 628 DDKFASLPRPPTT--------ALEWNAEDCLVDLDKTETEVDDPDWDDIAMLVGSEVVRS 679
Query: 195 IRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLG 254
+R A+ +K Q+ CSAGIA NK++AKL +KP KQ+I+ +V K+R LG
Sbjct: 680 LRTALWNKLQYTCSAGIARNKMMAKLGSSSNKPNKQTIVRNRAVQNFLGGFKFTKIRMLG 739
Query: 255 GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSI 314
GKLGD+V + +L + L+QL++ ++ TA WLY I RG D VN R KS+
Sbjct: 740 GKLGDQVTALFGTEQVGDLLQVPLEQLRAKLDDDTALWLYGIIRGEDRSEVNPRTQIKSM 799
Query: 315 GCCKRFPGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKV 373
K F + + + + W++ A ++ RL ED + N+RR + T++ + +V
Sbjct: 800 LSAKSF--RPSINSVEQAEKWLRIFAADIYGRLVEDGVLENRRRPR--TIALHHRQNAQV 855
Query: 374 NS 375
S
Sbjct: 856 RS 857
>gi|342183906|emb|CCC93386.1| putative DNA polymerase eta [Trypanosoma congolense IL3000]
Length = 517
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 181/387 (46%), Gaps = 36/387 (9%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R IA +DMDCFY QVE +L +P + Q+ G +IAVNY AR G+ R
Sbjct: 2 RCIAHLDMDCFYAQVEAVRLGIDCRTEPYVLSQW-----GNLIAVNYPARKFGIGRFDTL 56
Query: 63 DEAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEFSNI 106
+EA+Q CP ++ V + K + YR A R++ +L EF +
Sbjct: 57 EEARQKCPHVKFSHVATYAAGEVEYHYHENPRKQTHKVALEPYREASRKIFRILDEFDGV 116
Query: 107 -VERASIDEAYIDLTDVVHERMKSIG-HIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL 164
VE+ S+DEA++D+T + S G H + +V P R+ + WL
Sbjct: 117 DVEKGSVDEAFLDVTRAAQQLQASTGLHPPGGECRLEDIVD--PLTVIIPNRQEEISAWL 174
Query: 165 ---GQVYSDT-DTSL--MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLA 218
G+ + D D SL TE LA A +V +IR + + +F CSAGIAHNK+LA
Sbjct: 175 KGYGKTFMDVFDPSLHPQSTTESIVLLAAASHVVSKIRQRIYDELRFDCSAGIAHNKLLA 234
Query: 219 KLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTML-ELEKFS 277
K + HKP +Q++L V+ ++ +K+R GGK G+ V + C M E FS
Sbjct: 235 KSISARHKPNQQTLLFPDCVASAMWDMPFRKIRGFGGKFGEIVHKACGCKEMCQETWLFS 294
Query: 278 LKQLQSHF-EEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWI 336
L ++S F + A + Y RG D + R +SKS+ K F + T V W+
Sbjct: 295 LPVMRSFFVNDCDAEYAYRRLRGYDEGKIAERSISKSLIASKAFNPPS--LTTDGVKRWV 352
Query: 337 QELADEVCERLEDDLTLNKRRAQLLTV 363
LA E+ R E+ L R +
Sbjct: 353 VVLASELSSRYEEFCCLYDVRGHTFNI 379
>gi|336463579|gb|EGO51819.1| hypothetical protein NEUTE1DRAFT_149518 [Neurospora tetrasperma
FGSC 2508]
Length = 672
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 193/398 (48%), Gaps = 63/398 (15%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+DCFY QVE KP+AV Q+ G+IAVNY AR G+ RH
Sbjct: 44 RVIAHLDLDCFYAQVEMVRLGIPDDKPVAVQQWQ-----GLIAVNYPARSFGIGRHCNVS 98
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSE--- 102
EAK+ CP++ V + R K + YR R+++A++ E
Sbjct: 99 EAKKLCPDLIHQHVATWREGDAKWDYHPDAAANMATHKVSLDPYRLESRKILAIIKEELP 158
Query: 103 -FSNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK 157
VE+ASIDE ++DL+ VH ER +L+N P D+
Sbjct: 159 PHLQKVEKASIDELFMDLSAQVHTILIERF--------PELAN-------PPPYDDPTEM 203
Query: 158 AGV-----MEWLGQVYSDTDTSLMENTE----DFQELA--IAGVIVEEIRAAVLSKTQFH 206
+ ++W D EN E D+ ++A I IV ++R A+ K +
Sbjct: 204 LPMPSITALDWQADALVDLPD---ENAELEDPDWDDVAILIGSEIVRKVRIAIKDKLGYT 260
Query: 207 CSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQ 266
CSAG+A NK+L+KL KP +Q++L S+ ++ K+R+LGGKLG+++ +
Sbjct: 261 CSAGVACNKLLSKLGSAYRKPNQQTVLRNRSIQHFLSDFKFTKMRNLGGKLGEQISQMFH 320
Query: 267 CSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCL 326
T+ +L S++QL+S + T W+Y RGID VN R+ KS+ K F + +
Sbjct: 321 TDTVKDLLSASVEQLKSKLGDDTGVWVYNTVRGIDTSEVNPRVHIKSMLSAKSF--RPSI 378
Query: 327 ATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTV 363
+ + W++ A ++ RL E+ + NKRR + + +
Sbjct: 379 TSFEQAVRWLRIFAADIFSRLVEEGVLENKRRPKTINL 416
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 947 ADPTKII---CDKCSQPID-INELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILN 1002
++P II C +C+ +D ELQ HQD+HFA EL + N S+SSS+ N
Sbjct: 587 SEPGPIITLTCSRCNASLDSPEELQSHQDWHFAKELQEQERVSQTFVN-QPSASSSRAGN 645
Query: 1003 KKSS-----KRGRPSKLNSFKNSENF 1023
KS+ ++GRP K+ ++ F
Sbjct: 646 PKSTSTTPKRQGRPKKVERGQSKLKF 671
>gi|119479517|ref|XP_001259787.1| sister chromatid cohesion protein (Eso1), putative [Neosartorya
fischeri NRRL 181]
gi|119407941|gb|EAW17890.1| sister chromatid cohesion protein (Eso1), putative [Neosartorya
fischeri NRRL 181]
Length = 673
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/425 (30%), Positives = 197/425 (46%), Gaps = 75/425 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E + PLAV Q+++ +IA+NY AR G++R M
Sbjct: 44 RVIAHIDLDAFYAQCEMVRLGTPKEMPLAVRQWDS-----LIAINYPARSFGISRMMSAS 98
Query: 64 EAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVLSE-F 103
EA++HCPEI L V + R K + YR R+++ V+ E
Sbjct: 99 EAQKHCPEIVLQHVATFREGEGGKWAYREDAFKNISTDKVCLDPYRTESRKILKVMKEEL 158
Query: 104 SNI---------------------VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTF 142
S +E+ASIDE +IDL+ +V+ + +L N
Sbjct: 159 SRWHADLMDCEHEPCSHYQVQPASLEKASIDEVFIDLSPLVYALLLQ----RYPELRN-- 212
Query: 143 VVGFGPDNNDEDARKAGV-------MEWLGQ-VYSDTDTSLME-NTEDFQELA--IAGVI 191
GP D R + +EW + D D + E + D+ ++A I I
Sbjct: 213 ----GPQG---DGRSTPLPRPPTTALEWSTEDCLIDLDENETEVDDPDWDDIAMLIGSEI 265
Query: 192 VEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVR 251
V +R AV +K + CS G+A NK+++KL +KP KQ+I+ ++ + K+R
Sbjct: 266 VRSVRTAVWNKLSYTCSGGVARNKMMSKLGSACNKPNKQTIVRNRAIQNFLGSYKFTKIR 325
Query: 252 HLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVS 311
LGGKLGD+V + +L L+Q ++ ++ TASWLY I RG D VN R
Sbjct: 326 MLGGKLGDQVATLFGTEQVSDLLPVPLEQFRAKLDDDTASWLYGIIRGEDKSEVNPRTQI 385
Query: 312 KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETD 370
KS+ K F + + + W++ A ++ RL ED + N+RR + TV+
Sbjct: 386 KSMLSAKSF--RPSINSADQAEKWLRIFAADIYGRLVEDGVLENRRRPK--TVALHHRQG 441
Query: 371 GKVNS 375
G+V S
Sbjct: 442 GQVRS 446
Score = 39.7 bits (91), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 904 STVQFHSNSINKGNGNADVSPMDTVDIINTIADSSTVDSAINIADPTK-IICDKCSQPID 962
S +F S +I+ + +A + D + S++ A +A P+ C++C + +
Sbjct: 551 SPSEFASEAISLDSDSAQFGEKNEDDCTGALHGESSLPDAQTMATPSASYTCNRCQKSLP 610
Query: 963 INELQEHQDYHFALEL 978
I+E EH+D+HFA +L
Sbjct: 611 IDEQNEHEDWHFAKDL 626
>gi|167536588|ref|XP_001749965.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771475|gb|EDQ85140.1| predicted protein [Monosiga brevicollis MX1]
Length = 722
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/420 (29%), Positives = 196/420 (46%), Gaps = 77/420 (18%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I D+D FY QVE + +P L +PLAV Q++ G+IA++Y+ + G+ RH +
Sbjct: 5 RVIIHADLDAFYTQVERQRHPELKDRPLAVQQWS-----GLIAIDYKCKAAGIGRHSTVE 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA++ P++ V + KA + YR A R+++AV+ ++ ERASIDEAY D+T
Sbjct: 60 EARKILPDLACVHVDVINQKASLEPYRQASRDIMAVMEQYGTF-ERASIDEAYFDVTQEA 118
Query: 124 HERMKSIGHIAASQL-------------------------------SNTFVVGFGPDNND 152
+R A+QL ++T V+G+ PD+
Sbjct: 119 QQRE---AQTPATQLCRHYADLTLLQRGAVELRADLTLEDWLRVAMASTHVMGYAPDDGP 175
Query: 153 EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIA 212
+D G WL + S+ D L +I EIR V +T + CSAGIA
Sbjct: 176 DDHLGFG---WLPK--SEEDALLFHGA----------MIAAEIRFRVFEETGYVCSAGIA 220
Query: 213 HNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLE 272
HNK+ AK+ G +KP +Q++ P++S ++ R G E L + L
Sbjct: 221 HNKLFAKMGSGFNKPSQQTLYPRASS-------GDQQYRQAG--------ERLLVADCLG 265
Query: 273 LEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGK-TCLATRQD 331
L SL +L++ F +TA+WL+ + RG D V ++ +S+ K G+ T L
Sbjct: 266 L---SLAELRTEFSSETAAWLHGLLRGHDSRAVASKGPPRSLLEAKSITGQATQLIV--- 319
Query: 332 VSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIV 391
V +WI L + R+ DD + R + + F + D SRS + +D+V
Sbjct: 320 VEYWINNLCHGLARRILDDARRHNRWPKNYVLQFKRRADRTYFGASRSCGPVPHITRDMV 379
>gi|358369617|dbj|GAA86231.1| sister chromatid cohesion protein [Aspergillus kawachii IFO 4308]
Length = 670
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/419 (30%), Positives = 195/419 (46%), Gaps = 63/419 (15%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+D FY Q E + PLAV Q+++ +IA+NY AR G+TR +
Sbjct: 43 RVIAHVDLDAFYAQCEMVRLRTPRTVPLAVRQWDS-----LIAINYPARSFGITRMISAA 97
Query: 64 EAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVLSE-- 102
EAK+ CP+I L V + R K + YR R+++ V+ E
Sbjct: 98 EAKKLCPDIILQHVATFREGEGGKWAYRNDAFKRMNTDKVCLDPYRAESRKILKVMKEEL 157
Query: 103 ----------------FSNI----VERASIDEAYIDLTDVVHE-RMKSIGHIAASQLSNT 141
S + +E+AS+DE +IDL+ +VH ++ + A +
Sbjct: 158 ARWHRELVGDEQGASTQSTVQHAGLEKASVDEVFIDLSPLVHGVLLQRFPELRAGLQGDD 217
Query: 142 FVVGFGPDNNDEDARKAGVMEW-LGQVYSDTDTSLME-NTEDFQELAI--AGVIVEEIRA 197
V +EW D D E + D+ ++AI IV +RA
Sbjct: 218 RVTPL-------PVPPTTALEWDFEDCLIDLDEHETEVDDPDWDDIAILIGSEIVRSVRA 270
Query: 198 AVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKL 257
AV + Q+ CSAG+A NK++AKL +KP KQ+I+ +V + K+R LGGKL
Sbjct: 271 AVWDRLQYTCSAGVAKNKMMAKLGSACNKPNKQTIVRNRAVQRFLSGYKFTKIRMLGGKL 330
Query: 258 GDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCC 317
GD+V + +L K SL+Q ++ ++ TA+WLY I RG D VN+R KS+
Sbjct: 331 GDQVTAMFGTEQVSDLLKVSLEQFRAKLDDDTATWLYGIIRGEDKSEVNSRTQIKSMLSA 390
Query: 318 KRFPGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNS 375
K F + + + W+ A ++ RL ED + +KRR + TV+ +V S
Sbjct: 391 KSF--RPSINSVDQADKWLSIFAADIFGRLVEDGVLEHKRRPK--TVALHHRQGAQVRS 445
>gi|402084841|gb|EJT79859.1| sister chromatid cohesion protein Eso1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 785
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/404 (31%), Positives = 197/404 (48%), Gaps = 48/404 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E KPLAV Q+ G+IAVNY AR G+ RH D
Sbjct: 50 RVIAHIDLDAFYAQCETVRLGIPEDKPLAVQQWQ-----GLIAVNYPARKFGINRHCPID 104
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF-- 103
EA++ CPE+ V + R K + YR R ++A++ E
Sbjct: 105 EARKLCPELICQHVATWREGDDKWAYRDDAAANIGTDKVSLDPYRLQSRRILALIKECLP 164
Query: 104 --SNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK 157
VE+AS+DE +IDL+ VH ER + A Q + F P +
Sbjct: 165 PTQCKVEKASVDEVFIDLSANVHTVLLERFPELAATAPRQ--DPFENLPPPSST------ 216
Query: 158 AGVMEWLGQVYSDTDTSLMENTE-DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHN 214
V++W D D E + D+ + L +A IV IR AV + + CSAG+A N
Sbjct: 217 --VLDWQSDNLVDLDEVEAETDDPDWDDVVLLLASEIVRNIRLAVRERLGYTCSAGVASN 274
Query: 215 KVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELE 274
K+L+KL KP +Q+++ SV ++L K+R+LGGKLG++VVE ++ EL
Sbjct: 275 KLLSKLGSAHRKPNQQTVIRNRSVHHFLSDLKFTKIRNLGGKLGEQVVEAFGSDSVSELL 334
Query: 275 KFSLKQLQSHFEEKTASWLYYIARGID-HEPVNARLVSKSIGCCKRFPGKTCLATRQDVS 333
L+ L++ ++ +W+Y+I RG D EPVN+R KS+ K F + + + +
Sbjct: 335 AAPLELLKAKLGAESGTWVYHIIRGDDAGEPVNSRTQIKSMLSAKSF--RPSINRPEQAA 392
Query: 334 HWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNSC 376
W++ A ++ RL E+ + NKRR + + + + SC
Sbjct: 393 SWLRIFAADIFARLIEEGVLENKRRPRTMNLHHRNVGQTRSRSC 436
>gi|340519771|gb|EGR50009.1| predicted protein [Trichoderma reesei QM6a]
Length = 661
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 137/498 (27%), Positives = 226/498 (45%), Gaps = 60/498 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E KPLAV Q+ G+IA+NY AR + RH
Sbjct: 40 RVIAHIDLDAFYAQCEMVRLGIPEDKPLAVQQWQ-----GLIAINYPARKWQIGRHCDVA 94
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAV----LS 101
EAK+ CPE+ V + R K + YR R ++A+ L
Sbjct: 95 EAKKLCPELIAQHVATWREGDDKWAYREDAAANIATDKVSLDPYRLQSRRILALIKDCLP 154
Query: 102 EFSNIVERASIDEAYIDLTDVVH-ERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR---- 156
+ VE+ASIDE ++DL+ VH E ++ ++ + P + D
Sbjct: 155 KDLQKVEKASIDEVFLDLSAQVHTELLRRFPELSTA-----------PSSGDSAQHLPFP 203
Query: 157 KAGVMEWLGQ---VYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAH 213
A ++W V + +L + +D L + IV +RA + + + CSAGIA+
Sbjct: 204 SAAALDWQTDNLVVLEEEQEALDPDWDDVVML-VGSEIVRGVRAQIRERLGYTCSAGIAN 262
Query: 214 NKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL 273
+K+++KL KP Q+++ +V + + K+R+LGGKLGD+VV ++ EL
Sbjct: 263 SKLVSKLGSAYKKPNAQTVVRSRAVLPFLTGIKVTKMRNLGGKLGDQVVSIFNTESVKEL 322
Query: 274 EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVS 333
L Q+++ ++TA WLY RG+DH VN+R KS+ K F + + T +
Sbjct: 323 RDIPLDQIKAKLGDETAVWLYNTIRGVDHSEVNSRTQIKSMLSAKSF--RPSINTPEQAI 380
Query: 334 HWIQELADEVCERL-EDDLTLNKRRAQLLTV--SFTQETDGKVNSCSRSIALASYKLQDI 390
W++ A ++ RL E+ + +KR + + + +T K + S AL L ++
Sbjct: 381 KWLRIFAGDIYSRLVEEGILEHKRWPRTINLHHRHAGQTRSKQSPISPGKALDEQALFNL 440
Query: 391 VEVSMQVINKTNSAPPISDLTPPLLFLGLSASKF-SPLGSHPSIQQFFKPQDHPEPMTSE 449
+ + I P ++L+ LS F + + +I FFK +D P
Sbjct: 441 AKDLLHQIMAEGDVWPCANLS-------LSVGGFEEGVKGNMAIGAFFKKRDEVPPPLPP 493
Query: 450 HSSLPEQSTNHDSKKRDK 467
++PE T K+ +
Sbjct: 494 TDTIPEGRTAEQPSKKHR 511
>gi|110665656|gb|ABG81474.1| polymerase (DNA directed), eta [Bos taurus]
Length = 222
Score = 163 bits (412), Expect = 6e-37, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 112/159 (70%), Gaps = 5/159 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGI+AV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYTSWKGGGIVAVSYEARAFGVTRNMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L ++ + GKA+++KYR+A EV+ V+S F+ ++ER SIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQIRELHGKANLTKYRDASMEVMEVMSRFA-VMERGSIDEAYLDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDARKA 158
ER++ + + I+A L T + GF GP + K
Sbjct: 126 QERLQKLQNQPISADLLPTTCIEGFPQGPTTTEGTVEKG 164
>gi|417396963|gb|JAA45515.1| Putative dna polymerase eta-like isoform 2 [Desmodus rotundus]
Length = 200
Score = 162 bits (410), Expect = 9e-37, Method: Composition-based stats.
Identities = 79/148 (53%), Positives = 106/148 (71%), Gaps = 3/148 (2%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGI+AV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPQLRNKPCAVVQYKSWKGGGIVAVSYEARAFGVTRNMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP + L +V RGKA++ KYR A EV+ V+S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPGLLLAQVRETRGKANLMKYREASVEVMEVMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGFGPD 149
ER++ + I+A L T++ G D
Sbjct: 126 QERLQKLQGQPISADLLPTTYIEGLPQD 153
>gi|402224670|gb|EJU04732.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 604
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 182/374 (48%), Gaps = 46/374 (12%)
Query: 4 RIIALIDMDCFYC---QVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IALID D FY QV LNP KP+AV Q+ G+IA+NY AR G+TR M
Sbjct: 36 RVIALIDSDAFYAACEQVRLGLNPE---KPIAVQQWQ-----GLIAINYPARKYGITRLM 87
Query: 61 RGDEAKQHCPEIELCRVPSVR-GKADISKYRNAG------------REVIAVLSEFSNI- 106
EA + CPE+ V + R G + + NA RE I VL F +
Sbjct: 88 SVTEATKKCPELICVHVMTYREGSREPGYFPNAKPSTHKVSLDHYRRESIKVLRVFQSTL 147
Query: 107 ----VERASIDEAYIDLTDVVHER-MKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161
+ERASIDEA+ DLT V E ++ ++ T D D A V+
Sbjct: 148 PEAEIERASIDEAFFDLTAPVREEILRRYPYLRDVPSDAT-------DGMDSPLPPAPVI 200
Query: 162 EWLGQ----VYSDTDTSLMENTEDFQELAIA--GVIVEEIRAAVLSKTQFHCSAGIAHNK 215
+W G+ + + + ++ + ++A+A +V ++R V + + SAGIA NK
Sbjct: 201 DWTGRGNVLAIREGEEAGVDGQGTWADVALALGAEMVHKVRQEVHKQLGYTTSAGIARNK 260
Query: 216 VLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEK 275
+AKL KP Q++L +++ + + KK+R LGGKLGD + T+ +L
Sbjct: 261 TMAKLCASCKKPFGQTVLRDAAIPLYLNPMPFKKIRFLGGKLGDALASAYDAKTIGDLLS 320
Query: 276 FSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
S + +Q F E++ W+Y I RG D+ V R KS+ K + + T D HW
Sbjct: 321 VSKEDMQQQFGEES-YWVYDILRGRDYAEVKERTGVKSMMASKNV--RPAIKTFSDGQHW 377
Query: 336 IQELADEVCERLED 349
++ L+ E+ RLE+
Sbjct: 378 LRVLSAELSLRLEE 391
>gi|330916199|ref|XP_003297332.1| hypothetical protein PTT_07693 [Pyrenophora teres f. teres 0-1]
gi|311330060|gb|EFQ94574.1| hypothetical protein PTT_07693 [Pyrenophora teres f. teres 0-1]
Length = 715
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 210/444 (47%), Gaps = 58/444 (13%)
Query: 4 RIIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IA +D+D FY Q E ++PS KPLAV Q+ G+IA+NY AR G++RH+
Sbjct: 44 RVIAHVDLDAFYAQCETVRLGIDPS---KPLAVQQWQ-----GLIAINYPARAFGLSRHV 95
Query: 61 RGDEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIA---- 98
EA + CPE+ L V + + K + YR R+++
Sbjct: 96 TSTEALKQCPELILQHVATWKEGDETWAYHENSFKEMATHKVSLDPYRTESRKILKCIKE 155
Query: 99 VLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK- 157
+L E VE+ASIDE ++DL+ VH + L + GP D+ +
Sbjct: 156 ILPEKDQRVEKASIDEVFMDLSAQVH-----------TILLERYPELRGPAPYDDPTERL 204
Query: 158 ----AGVMEWLGQVYSDTDTSLMENTE-DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAG 210
V++W +T E+ + D+ + + IA IV ++R + + CS G
Sbjct: 205 PKVPTTVLDWAADALVETGEEDGEDRDPDWDDVCMVIASEIVRDVRKHIKDTLGYTCSGG 264
Query: 211 IAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTM 270
IA NK+L+K+ G KP +Q+++ +V +++ K+R LGGKLGDEVV +
Sbjct: 265 IARNKMLSKIGSGYKKPNQQTVIRNRAVKHFLSDMKFTKIRMLGGKLGDEVVAMFGTDKV 324
Query: 271 LELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQ 330
+L + L QL+ + T +W+Y I RG D+ VN R KS+ K F + + + +
Sbjct: 325 KDLVEQPLDQLKK-LGDDTGTWIYSIIRGEDNSEVNPRTQIKSMLSAKSF--RPSIHSFE 381
Query: 331 DVSHWIQELADEVCER-LEDDLTLNKRRAQLLTVSFTQ--ETDGKVNSCSRSIALASYKL 387
W++ ++ R +E+ + NKRR + + + Q +T + + L+ L
Sbjct: 382 QGVRWLRIFVADIFSRCIEEGVLENKRRPKSINLHHRQGAQTRSRQAPIPQGKPLSETIL 441
Query: 388 QDIVEVSMQVINKTNSAPPISDLT 411
D+ + + + A P S+L+
Sbjct: 442 FDLAKNLLAQVVVDGRAWPCSNLS 465
>gi|257205730|emb|CAX82516.1| polymerase (DNA directed) [Schistosoma japonicum]
Length = 228
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 127/212 (59%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RI+ L+DMDCFY QVE + P GKP V QY+ WKGGG +A++YEAR G+ R M GD
Sbjct: 5 RIVMLLDMDCFYVQVEQREAPETKGKPCIVSQYSEWKGGGALAISYEARALGIKRGMFGD 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
E + P++ + +VP RGKA+++KYR A EVI +SEF++ +ERASIDEAY+DLT +V
Sbjct: 65 EIRAQYPDVIIFKVPEKRGKAELTKYRVASSEVIQCISEFTSDIERASIDEAYVDLTAIV 124
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ ++++ Q ++ V D ++ + + SD L + + +
Sbjct: 125 DSTLDRDNNLSSLQPNSESYVLVNSDIAEKLNLELTQTNCVSLNGSDWVDLLHSHFAEGK 184
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 215
LAIA +V IR A+ KT F CSAGI NK
Sbjct: 185 RLAIASELVYRIRQAIFRKTGFICSAGIGPNK 216
>gi|396501078|ref|XP_003845891.1| hypothetical protein LEMA_P011990.1 [Leptosphaeria maculans JN3]
gi|312222472|emb|CBY02412.1| hypothetical protein LEMA_P011990.1 [Leptosphaeria maculans JN3]
Length = 731
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 191/398 (47%), Gaps = 56/398 (14%)
Query: 4 RIIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IA +D+D FY Q E ++P+ KPLAV Q+ G+IA+NY AR G++RH+
Sbjct: 45 RVIAHVDLDAFYAQCETVRLGIDPN---KPLAVQQWQ-----GLIAINYPARAFGLSRHV 96
Query: 61 RGDEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIA---- 98
EA + CPE+ L V + + K + YR A R+++
Sbjct: 97 TSTEALKQCPELILQHVATWKEGDEKWAYHENSFKDMSTHKVSLDPYRQASRKILQCIKE 156
Query: 99 VLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK- 157
L E VE+ASIDE ++DL+ VH + L + + GP ++ +
Sbjct: 157 ALPEKEQRVEKASIDEVFMDLSAQVH-----------TILLDRYPELRGPAPYEDPTERL 205
Query: 158 ----AGVMEWLGQVYSDTDTSLMENTE-DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAG 210
++W +T E+ + D+ + + IA IV E+R + + CSAG
Sbjct: 206 PKVPTTALDWAADALVETGEEDGEDADPDWDDVCMVIASEIVREVRRHIKDTLGYTCSAG 265
Query: 211 IAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTM 270
+A NK+L+KL G KP +Q+++ +V ++ K+R LGGKLGDEVV +
Sbjct: 266 VARNKMLSKLGSGYKKPNQQTVIRNRAVKHFLGDMKFTKIRMLGGKLGDEVVAMFGTDKV 325
Query: 271 LELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQ 330
+L L+QL+ + T +WLY RG D+ VN R KS+ K F + + + +
Sbjct: 326 RDLMDQPLEQLKK-LGDDTGTWLYSTIRGEDNSEVNPRTQIKSMLSAKSF--RPSINSFE 382
Query: 331 DVSHWIQELADEVCER-LEDDLTLNKRRAQLLTVSFTQ 367
W++ ++ R +E+ + NKRR + + + Q
Sbjct: 383 QGVRWLRIFVADIFSRCVEEGVLENKRRPKTINLHHRQ 420
Score = 43.1 bits (100), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 953 ICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKSSKRGR 1010
C KC+ + ++E EH DYHFALELS S ++ + ++ KI + S RGR
Sbjct: 644 FCAKCNVHLPLHEEAEHVDYHFALELSKEMRHEERQSPLTTAQNARKIPAVQKSGRGR 701
>gi|340975581|gb|EGS22696.1| DNA polymerase eta-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 507
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 188/382 (49%), Gaps = 43/382 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++A ID+DCFY QVE P AV Q+ G+IAVNY AR G+ RH
Sbjct: 61 RVVAHIDLDCFYAQVEMVRLGIAEDTPFAVQQWQ-----GLIAVNYPARSYGIGRHCTIT 115
Query: 64 EAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVLSEF---- 103
EAK+ CP++ V + R K + YR+ R+++ ++ E
Sbjct: 116 EAKKLCPKLITQHVATWREADGKWAYREDPQVATDKVCLDPYRSESRKILVLIKELLPHG 175
Query: 104 SNIVERASIDEAYIDLTDVVHE-RMKSIGHIAASQ----LSNTFVVGFGPDNNDEDARKA 158
VE+ASIDE ++DL+ VH ++ + + Q LS + P +D D +
Sbjct: 176 LQRVEKASIDEVFLDLSAHVHAILLERFPELLSPQPHRDLSELLPL---PPISDLDWQAD 232
Query: 159 GVMEWLGQVYSDTD---TSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 215
+++ D+D ++++ D +A IV +R+++ K + CSAGIA NK
Sbjct: 233 TLVD-----AGDSDNKTLAILDPDWDDVAFYVASGIVRHLRSSIKEKLGYTCSAGIARNK 287
Query: 216 VLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEK 275
+L+KL KP +Q+++ +V+ + + K+R+LGGKLG++V ++ +L
Sbjct: 288 LLSKLGSSYKKPNQQTVIRNRAVAHFLSGVKFTKIRNLGGKLGEQVSRAFNTDSIPDLLT 347
Query: 276 FSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
++Q++ ++TA WLY RG+D VN R+ KS+ K F + L T W
Sbjct: 348 VPIEQMKVKLGDETAIWLYNTLRGVDMSEVNPRIQIKSMLSAKSF--RPTLTTIDQAVRW 405
Query: 336 IQELADEVCERLEDDLTLNKRR 357
++ A ++ RL ++ L RR
Sbjct: 406 LRIFAADIFSRLVEEGVLEHRR 427
>gi|295666590|ref|XP_002793845.1| DNA polymerase eta [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277498|gb|EEH33064.1| DNA polymerase eta [Paracoccidioides sp. 'lutzii' Pb01]
Length = 664
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 131/461 (28%), Positives = 217/461 (47%), Gaps = 80/461 (17%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R++A ID+D FY Q E +LN L +PLAV Q+ + +IAVNY AR +TR +
Sbjct: 29 RVVAHIDLDAFYAQCEMVRLNTPL-TQPLAVQQWES-----LIAVNYPARAFNITRMLTA 82
Query: 63 DEAKQHCPEIELCRVPSVR-GKADISKYRNAGREVIA----------------------V 99
EA++ CP++ V + R G+ + KYR+ E IA V
Sbjct: 83 AEARKRCPQLITQHVATFREGEGEQWKYRDDAAECIATDKVSLEPYRMESRKILEVIKAV 142
Query: 100 LSEFSNIV--------------------ERASIDEAYIDLTDVVHERMKSIGHIAASQLS 139
L+E++ V E+A IDE ++DL+ +V+E + L
Sbjct: 143 LTEWAERVMRDVGVEGAKGPGTEQLVRVEKAGIDEVFVDLSALVYETL----------LE 192
Query: 140 NTFVVGFGPDNNDEDARKAG----VMEWLGQVYSDTDTSLMENTEDFQE-----LAIAGV 190
++ G D + R G V+EW G+ D + E ED + + +
Sbjct: 193 WYPMLREGEVELDVNERLPGPPTTVLEW-GKEDMLVDLDVGEAEEDDPDWDDMCMLVGAD 251
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
IV +RAA+ + ++ CSAGIA NK++AKL +KP KQ+I+ ++ + ++
Sbjct: 252 IVRSVRAAIWERLKYTCSAGIARNKMMAKLGSSCNKPNKQTIVRNRAIQHFLSGFRFTQI 311
Query: 251 RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLV 310
R LGGKLG +V T + +L + ++QL+ + T +WLY I RG ++ V+ R
Sbjct: 312 RMLGGKLGKQVSATFGTEEVGDLLRIPIEQLKLKLGDDTGTWLYEIIRGYEYSEVSTRTK 371
Query: 311 SKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCER-LEDDLTLNKRRAQLLTVSFTQET 369
KS+ K F + + + W++ ++ R LE+ + NKRR +++T+ T
Sbjct: 372 IKSMLSTKSF--RPSIKSSGQAEKWLRIFVADIYGRLLEEGVLENKRRPKVVTIH--HRT 427
Query: 370 DGKVNSCSRSI----ALASYKLQDIVEVSM-QVINKTNSAP 405
G+ S I ++ L D+ + + QV+N+ N P
Sbjct: 428 KGQTRSRQIPIPPGRPMSDTMLFDLAKTLLAQVVNEGNIWP 468
>gi|219116476|ref|XP_002179033.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409800|gb|EEC49731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 592
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 193/393 (49%), Gaps = 39/393 (9%)
Query: 3 SRIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+R++ L+D+DCFY Q EC +L PLA++Q+++ ++AV Y AR G+ R
Sbjct: 35 ARVVLLLDLDCFYAQCECVRLGWDAMEIPLALLQWDS-----VLAVTYPARKYGIKRGDS 89
Query: 62 GDEAKQH----CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSN--IVERASIDEA 115
D Q C + + + + + D G + V ++F + ++ERASIDE
Sbjct: 90 WDTVHQKSQGACYAVHVPILTTNGSRTDRVATLPPGEVLAWVENQFGDNVVLERASIDEF 149
Query: 116 YIDLTDVVHERMKSIGHIAASQLSNTF-VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
++D+T+V + L +T V G +N+ E A + + ++ +
Sbjct: 150 FLDVTNVCY-------------LESTLDVCDLGSNNSLEGALQETAVVGQSEIMTLVRNG 196
Query: 175 LMENTEDFQELA-IAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
+ + E Q A +A I +E+R + F SAGI NK +AKL KP Q+I
Sbjct: 197 MDVDVEALQRGAHLARCIRDEVRTLL----GFTLSAGIGSNKTIAKLSAAYGKPNGQAIT 252
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC---STMLELEKF-SLKQLQSHFEEKT 289
V L A+ I+K R+LGGKLG V L +T+ + K+ SL L+ HFE T
Sbjct: 253 YPQFVDTLLADTEIRKCRNLGGKLGKTVQALLPADAPTTVHSIAKYLSLPTLEQHFEAPT 312
Query: 290 ASWLYYIARGIDHEPV---NARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCER 346
A+W+Y +ARG+D EPV N ++KSI K P + ++ WI+ LADE+ R
Sbjct: 313 AAWVYRVARGVDTEPVASKNESALTKSITAFKSLPFDVQGHDWESLASWIRLLADEIVSR 372
Query: 347 LEDDLTLNKRRAQLLTVSFTQE-TDGKVNSCSR 378
+E D + N R + T+ + T G+ N R
Sbjct: 373 VERDASRNGRYPKSCTIQYAGNGTTGQRNKSIR 405
>gi|71746744|ref|XP_822427.1| DNA polymerase eta [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832095|gb|EAN77599.1| DNA polymerase eta, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 525
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 178/374 (47%), Gaps = 38/374 (10%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R IA IDMDCFY QVE +L +P + Q+ G +IAVNY AR G+ R
Sbjct: 2 RCIAHIDMDCFYAQVEAVRLGVDCRTEPYVLSQW-----GNLIAVNYPARKFGIGRFDTV 56
Query: 63 DEAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEFSNI 106
+A + CP +++ V + K + YR A R++ +L F +
Sbjct: 57 TDALEKCPHVKISHVATYAAGEVEYRYHENPSKQTHKVALEPYREASRKIFRILDSFDGV 116
Query: 107 -VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL- 164
VE+ S+DEA++D+T H + +G + +SQ P +R+A + WL
Sbjct: 117 EVEKGSVDEAFLDVTKAAHMKQGEMG-LLSSQGELRLEDVADPTTIVIPSRQAEIAAWLK 175
Query: 165 --GQVYSDT-DTSL--MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
G+ +SD D +L E+ LA A +V IR + + ++ CSAGIAHNK+LAK
Sbjct: 176 EHGREFSDVFDVTLHPQPTAENMSLLAAASRVVWTIRQKIYDELRYDCSAGIAHNKLLAK 235
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCS---TMLELEKF 276
+ HKP +Q++L V+ + +L K +R GGK G EVV L C T E
Sbjct: 236 SISARHKPNQQTLLFPDCVASVMWDLPFKSIRGFGGKFG-EVVR-LACGGKETCREAWLH 293
Query: 277 SLKQLQSHFEE-KTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
SL + FE A + Y RG D + R +SKS+ K F + +T V W
Sbjct: 294 SLCAMSKFFESVGDAEYAYRRLRGYDEGKIRERSISKSLMASKAFSPPS--STANGVQKW 351
Query: 336 IQELADEVCERLED 349
+ L+ E+ R ED
Sbjct: 352 VTVLSGELSARYED 365
>gi|452842927|gb|EME44862.1| hypothetical protein DOTSEDRAFT_70800 [Dothistroma septosporum
NZE10]
Length = 628
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 187/387 (48%), Gaps = 53/387 (13%)
Query: 29 KPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKAD--- 85
+PLAV Q+ G+IA+NY AR G+ RH+ EAK+ CP+I +C+ + + D
Sbjct: 10 QPLAVQQWQ-----GLIAINYAARAYGLNRHVTITEAKEKCPDI-ICQHVATWKEGDTTW 63
Query: 86 ----------------ISKYRNAGREVIAV----LSEFSNIVERASIDEAYIDLTDVVHE 125
+ YR R+++A+ L + VE+ASIDE ++DL+ VH
Sbjct: 64 SYADDAFKEIATRKVSLDPYRIESRKILALIKDCLPKEVQKVEKASIDEVFLDLSAQVHG 123
Query: 126 RMKSIGHIAASQLSNTFVVGFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTE 180
+ H +L GP D+ + + V++W D D E +
Sbjct: 124 ILLERYH----ELR-------GPAPYDDPSEPLPRPPSTVLDWKADALVDLDEKWSEEED 172
Query: 181 -DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
D+ + + IA IV ++RA + + ++ CSAG++ NK+LAKL G KP Q+++ +
Sbjct: 173 PDWDDVVMLIASEIVRDVRARIFKELKYTCSAGLSRNKMLAKLGSGHKKPNAQTVIRNRA 232
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V + K+R+LGGKLGDEVV T+ EL S++QL+ + T +WLY +
Sbjct: 233 VQQFLSGFKFTKIRNLGGKLGDEVVAAFNTDTVSELLPISIEQLKKQLGDSTGAWLYGVI 292
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKR 356
RG D VN R KS+ K F + + + S W++ ++ RL E+ + NKR
Sbjct: 293 RGEDDSEVNPRTQIKSMLSAKSF--RPSINSVDVASKWLRIFVADIFSRLVEEGVLENKR 350
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALA 383
R + T++ + S S I L
Sbjct: 351 RPK--TINLHHRQGAQTRSKSAPIPLG 375
>gi|225683428|gb|EEH21712.1| sister chromatid cohesion protein Eso1 [Paracoccidioides
brasiliensis Pb03]
Length = 681
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 142/500 (28%), Positives = 230/500 (46%), Gaps = 92/500 (18%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R++A ID+D FY Q E +LN L +PLAV Q+ + +IAVNY AR +TR +
Sbjct: 29 RVVAHIDLDAFYAQCEMVRLNTPLT-QPLAVQQWES-----LIAVNYPARAFNITRMLTA 82
Query: 63 DEAKQHCPEIELCRVPSVR-GKADISKYRNAGREVIA----------------------V 99
EA++ CP++ V + R G+ + KYR+ E IA V
Sbjct: 83 AEARKRCPQLITQHVATFREGEGEQWKYRDDAAECIATDKVSLEPYRMESRKILEVIKTV 142
Query: 100 LSEFSN---------------------IVERASIDEAYIDLTDVVHERMKSIGHIAASQL 138
L+E + VE+A IDE ++DL+ +V+E + L
Sbjct: 143 LTERAEKVMRDVGVEGAAKGPGTEQLVRVEKAGIDEVFVDLSALVYETL----------L 192
Query: 139 SNTFVVGFGPDNNDEDARKAG----VMEWLGQVYSDTDTSLMENTEDFQE-----LAIAG 189
++ G D + R G V+EW G+ D + E ED + + +
Sbjct: 193 EWYPMLREGEVELDVNERLPGPPTTVLEW-GKEDMLVDLDVGEAEEDDPDWDDMCMLVGA 251
Query: 190 VIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKK 249
IV +RAA+ + ++ CSAGIA NK++AKL +KP KQ+I+ ++ + +
Sbjct: 252 DIVRSVRAAIWERLKYTCSAGIARNKMMAKLGSSCNKPNKQTIVRNRAIQHFLSGFRFTQ 311
Query: 250 VRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARL 309
+R LGGKLG +V T + +L + ++QL+ + T +WLY I RG ++ V+ R
Sbjct: 312 IRMLGGKLGKQVSATFGTEEVGDLLRIPIEQLKLKLGDDTGTWLYEIIRGYEYSEVSMRT 371
Query: 310 VSKSIGCCKRF-PGKTCLATRQDVSHWIQELADEVCER-LEDDLTLNKRRAQLLTVSFTQ 367
KS+ K F PG + + W++ ++ R LE+ + NKRR +++T+
Sbjct: 372 KIKSMLSTKSFRPG---IKSSGQAEKWLRIFVADIYGRLLEEGVLENKRRPKVVTIH--H 426
Query: 368 ETDGKVNSCSRSI----ALASYKLQDIVEVSM-QVINKTNSAPPISDLTPPLLFLGLSAS 422
T G+ S I ++ L D+ + + QV+N+ N P + L L+ S
Sbjct: 427 RTKGQTRSRQIPIPPGRPMSDTMLFDLAKTLLAQVVNEGNIWPCAN--------LSLNVS 478
Query: 423 KFS-PLGSHPSIQQFFKPQD 441
F L + S+ FF D
Sbjct: 479 GFEDGLTGNRSLDSFFGRGD 498
>gi|189192050|ref|XP_001932364.1| sister chromatid cohesion protein Eso1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187973970|gb|EDU41469.1| sister chromatid cohesion protein Eso1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 714
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/444 (27%), Positives = 209/444 (47%), Gaps = 58/444 (13%)
Query: 4 RIIALIDMDCFYCQ---VECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IA +D+D FY Q V ++PS KPLAV Q+ G+IA+NY AR G++RH+
Sbjct: 44 RVIAHVDLDAFYAQCETVRLGIDPS---KPLAVQQWQ-----GLIAINYPARAFGLSRHV 95
Query: 61 RGDEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSE 102
EA + CPE+ L V + + K + YR R+++ + E
Sbjct: 96 TSTEALKQCPELILQHVATWKEGDETWAYHENSFKDMATHKVSLDPYRQESRKILKCIKE 155
Query: 103 F----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK- 157
VE+ASIDE ++DL+ VH + L + GP D+ +
Sbjct: 156 ILPDKDQRVEKASIDEVFMDLSAQVH-----------TILLERYPELRGPAPYDDPTERL 204
Query: 158 ----AGVMEWLGQVYSDTDTSLMENTE-DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAG 210
V++W +T E+ + D+ + + IA IV ++R + + CS G
Sbjct: 205 PKVPTTVLDWAADALVETGEEDGEDRDPDWDDVCMVIASEIVRDVRKHIKDTLGYTCSGG 264
Query: 211 IAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTM 270
IA NK+L+KL G KP +Q+++ +V +++ K+R LGGKLGDEVV +
Sbjct: 265 IARNKMLSKLGSGYKKPNQQTVIRNRAVKHFLSDMKFTKIRMLGGKLGDEVVAMFGTDKV 324
Query: 271 LELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQ 330
+L + L QL+ + T +W++ I RG D+ VN R KS+ K F + + + +
Sbjct: 325 RDLVEQPLDQLK-RLGDDTGTWIHSIIRGEDNSEVNPRTQIKSMLSAKSF--RPAIHSFE 381
Query: 331 DVSHWIQELADEVCER-LEDDLTLNKRRAQLLTVSFTQ--ETDGKVNSCSRSIALASYKL 387
W++ ++ R +E+ + NKRR + + + Q +T + + L+ L
Sbjct: 382 QGVRWLRIFVADIFSRCVEEGVLENKRRPKSINLHHRQGAQTRSRQAPIPQGKPLSETIL 441
Query: 388 QDIVEVSMQVINKTNSAPPISDLT 411
D+ + + + A P S+L+
Sbjct: 442 FDLAKNLLAQVVVDGRAWPCSNLS 465
>gi|392574155|gb|EIW67292.1| hypothetical protein TREMEDRAFT_12962, partial [Tremella
mesenterica DSM 1558]
Length = 645
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 178/383 (46%), Gaps = 49/383 (12%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT IA D+D Y Q E PL Q+ + IIAVNY AR G+ R
Sbjct: 12 MTVLTIAHCDIDAAYAQFEQVRLGLPDDIPLICAQWQS-----IIAVNYPARKYGIKRFN 66
Query: 61 RGDEAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEF- 103
DEAK+ CP + + V + R K + YR +++A+ E
Sbjct: 67 TIDEAKKMCPHLVVQHVATYRNGEAEAGYWGEVDPRTHKVSLDPYRRESLKILAIFKEMV 126
Query: 104 -SNIVERASIDEAYIDLTDVVHERM-KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161
+E+ASIDEA++DLT V ER+ + ++ SQ+ P+ D A +
Sbjct: 127 PRGEIEKASIDEAFLDLTTQVLERLLERFPYL--SQVPPD-----APEGLDSALPTAPPV 179
Query: 162 EWL--GQVY---SDTDTSL-MENTEDFQE---------LAIAGVIVEEIRAAVLSKTQFH 206
W G V+ +TD +L +E + QE L I I+ E+RA V + +
Sbjct: 180 NWQNSGNVFPIDGETDPALGIEEPDGSQEPEGKWEDWALCIGAEIMSELRAEVYKRLHYT 239
Query: 207 CSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQ 266
CSAGIAHNK +AKL KP Q++L ++ N+ +R LGGKLG+ +
Sbjct: 240 CSAGIAHNKAMAKLCSAWKKPNNQTVLRIAATPAFLRNMDFTDIRFLGGKLGNAIATEYG 299
Query: 267 CSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCL 326
T+ ++ L +LQ F E++ W+Y I RGIDH V R+ +KS+ K + +
Sbjct: 300 AKTVGDMLTVPLDELQRRFGEESV-WVYNIIRGIDHTEVKERVTTKSMLASKN--TRPAV 356
Query: 327 ATRQDVSHWIQELADEVCERLED 349
T HWIQ L+ E+ RL +
Sbjct: 357 TTPAQGLHWIQVLSGELNVRLRE 379
>gi|261332129|emb|CBH15122.1| DNA polymerase eta, putative [Trypanosoma brucei gambiense DAL972]
Length = 525
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 177/374 (47%), Gaps = 38/374 (10%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R I IDMDCFY QVE +L +P + Q+ G +IAVNY AR G+ R
Sbjct: 2 RCIVHIDMDCFYAQVEAVRLGVDCRTEPYVLSQW-----GNLIAVNYPARKFGIGRFDTV 56
Query: 63 DEAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEFSNI 106
+A + CP +++ V + K + YR A R++ +L F +
Sbjct: 57 TDALEKCPHVKISHVATYAAGEVEYRYHENPSKQTHKVALEPYREASRKIFRILDSFDGV 116
Query: 107 -VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL- 164
VE+ S+DEA++D+T H + +G + +SQ P +R+A + WL
Sbjct: 117 EVEKGSVDEAFLDVTKAAHMKQGEMG-LLSSQGELRLEDVADPTTIVIPSRQAEIAAWLK 175
Query: 165 --GQVYSDT-DTSL--MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
G+ +SD D +L E+ LA A +V IR + + ++ CSAGIAHNK+LAK
Sbjct: 176 EHGREFSDVFDVTLHPQPTAENMSLLAAASRVVWTIRQKIYDELRYDCSAGIAHNKLLAK 235
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCS---TMLELEKF 276
+ HKP +Q++L V+ + +L K +R GGK G EVV L C T E
Sbjct: 236 SISARHKPNQQTLLFPDCVASVMWDLPFKSIRGFGGKFG-EVVR-LACGGKETCREAWLH 293
Query: 277 SLKQLQSHFEE-KTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
SL + FE A + Y RG D + R +SKS+ K F + +T V W
Sbjct: 294 SLCAMSKFFESVGDAEYAYRRLRGYDEGKIRERSISKSLMASKAFSPPS--STANGVQKW 351
Query: 336 IQELADEVCERLED 349
+ L+ E+ R ED
Sbjct: 352 VTVLSGELSARYED 365
>gi|255955947|ref|XP_002568726.1| Pc21g17280 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590437|emb|CAP96625.1| Pc21g17280 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 646
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 207/467 (44%), Gaps = 68/467 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E PLAV Q+++ +IA+NY AR G++R +
Sbjct: 34 RVIAHIDLDAFYAQCEMVRLGIPRETPLAVRQWDS-----LIAINYAARPFGISRLINVA 88
Query: 64 EAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVL---- 100
EA++ CP++ L V + R K + YR R+++ +
Sbjct: 89 EARKLCPDLVLQHVATFREGEGGRWAYRDDSFKNISTDKVSLDPYRAQSRKILQTMKEAL 148
Query: 101 ----------------SEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 144
E S ++E+ASIDE +IDL+ +++ A Q +
Sbjct: 149 ATWSADNTEVENHNSKQELSAVLEKASIDEVFIDLSPLIYR--------ALLQRYPELRM 200
Query: 145 GFGPDNNDED--ARKAGVMEWLGQVYSDTDT-SLMENTEDFQELA--IAGVIVEEIRAAV 199
G +N D + ++W D D E+ D+ ++ I IV +R V
Sbjct: 201 GTQDENRDAELPTPPTTALQWDTDCLVDLDKHETEEDDPDWDDIVMLIGSEIVRSVRNTV 260
Query: 200 LSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGD 259
K + CSAG+ NK++AKL +KP Q+++ +V ++R LGGKLG+
Sbjct: 261 WEKLSYTCSAGLGRNKMIAKLGSACNKPNLQTVVRNRAVQNFLGGYKFTQIRMLGGKLGE 320
Query: 260 EVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKR 319
++ + +L L+QL+S + TASWLY I RG D VN R KS+ K
Sbjct: 321 QITAAFGTEKVSDLLNVPLEQLRSKLADHTASWLYGIIRGDDRSEVNPRTQIKSMLSAKS 380
Query: 320 FPGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSF-TQETDGKVNSCS 377
F + + + W++ A ++ RL ED + N+RR +++T+ T ++ +
Sbjct: 381 F--RPSINSLDQAEKWLRIFAADIYGRLVEDGVLENRRRPKVITMHHRTAQSRSRQIPIP 438
Query: 378 RSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKF 424
S A+ L D+ ++ + A P S+L+ LS S F
Sbjct: 439 GSNAIDENLLYDLANTLLRQVVADGQAWPCSNLS-------LSVSSF 478
>gi|449017709|dbj|BAM81111.1| similar to DNA-damage-inducible protein P [Cyanidioschyzon merolae
strain 10D]
Length = 516
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 179/371 (48%), Gaps = 44/371 (11%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
+ RI+ IDMDCFY QVE K PL VVQ+N+ I+AV+Y AR G+ R
Sbjct: 14 LERRIVVHIDMDCFYAQVERKRLDLAEDVPLCVVQWNS-----ILAVSYAARAAGIKRGA 68
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
EAK CPE L V +V AGR+ +SE ++ E ASI A
Sbjct: 69 TPQEAKSKCPECVLVHVETVDA---------AGRK--PQVSEL-DLSEEASIVRA---AN 113
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
V +R + L + + G +D R D + +E T+
Sbjct: 114 TVCLDRYR---------LESEKIFGILSRFSDAVER------------CSIDEAFIELTD 152
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+ A +V+ +R A+L + ++ CSAG+A NK+LAK +KP K + +P S +
Sbjct: 153 VVDDFDEAVRLVQRMRDAILDELRYTCSAGVACNKMLAKFASSTNKPNKLTAIPWSETNS 212
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ A + + +VR LGGK G E+ + T+ +L + S+ LQ+ +E TA WL+++ARG
Sbjct: 213 ILARIPLSRVRGLGGKFGAELQRNFKAETLADLSQLSMAALQAAYEPCTAEWLFWLARGY 272
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D V R +S+ K F + T QD + LA + +R+E D +++ RR +
Sbjct: 273 DPSRVEPRDRPRSLLAAKSFAP---VDTWQDARRILFLLATRLEQRIERDTSMHHRRPRT 329
Query: 361 LTVSFTQETDG 371
L VSFT G
Sbjct: 330 LCVSFTSAQAG 340
>gi|350594084|ref|XP_003483838.1| PREDICTED: DNA polymerase eta-like, partial [Sus scrofa]
Length = 163
Score = 157 bits (397), Expect = 3e-35, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 108/145 (74%), Gaps = 3/145 (2%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGI++V+YEAR GVT+ M D
Sbjct: 7 RVVALLDMDCFFVQVEQRQNPHLKNKPCAVVQYKSWKGGGIVSVSYEARAFGVTKSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ V+S F+ ++ERASIDEA++DLT+ V
Sbjct: 67 DAKKLCPDLLLAQVLESRGKANLTKYREASAEVMEVMSRFA-MIERASIDEAFVDLTNAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF 146
ER++ + ++A L T++ GF
Sbjct: 126 RERLQKLQGQPVSADLLPTTYIEGF 150
>gi|331234078|ref|XP_003329699.1| hypothetical protein PGTG_11449 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308689|gb|EFP85280.1| hypothetical protein PGTG_11449 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 673
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 124/413 (30%), Positives = 190/413 (46%), Gaps = 49/413 (11%)
Query: 4 RIIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IA D+D Y Q E K+ P KPLAV Q+ G+IAVNY AR G+TRH+
Sbjct: 19 RVIAHCDVDAAYAQFEQVRLKIPPE---KPLAVQQWR-----GLIAVNYPARKFGITRHL 70
Query: 61 RGDEAKQHCPEIELCRVPSVRG------------------KADISKYRNAGREVIAVLSE 102
D+A++ CPE+ V + K + YR +++ + SE
Sbjct: 71 PFDQARKLCPELICVHVATYAHGDSETEAKYHENPRAETHKVSLDPYRRESVKILKIFSE 130
Query: 103 FSNIVERASIDEAYIDLTDVVHERM------KSIGHI--AASQLSNTFVVGFGPDNNDED 154
+E+ASIDEA++D + V E + S+ + ++S++S + P + ED
Sbjct: 131 SCPTIEKASIDEAFLDFSIPVREILCTRYAFPSLEALQDSSSEISLDDPLPNPPPLDLED 190
Query: 155 ARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHN 214
++ V D D+ NT L I ++ R V + + CSAGIA N
Sbjct: 191 LLRSSQSN---LVPLDVDSDHPTNTWTDIALLIGAELMARCRQQVFDRLGYTCSAGIATN 247
Query: 215 KVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCST----- 269
K+LAKL KP Q++L +V + K+R LGGKLG V E + +
Sbjct: 248 KMLAKLCSAYKKPNAQTVLRAGAVRDFLRPFELSKLRFLGGKLGQSVSELVASTCDKSCQ 307
Query: 270 MLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATR 329
+ E+ K L QLQ+ E+T W++ RG+D V + + KS+ K F + + T
Sbjct: 308 LSEVWKIPLSQLQASLGEQTGMWVWETVRGVDRSEVETKTLVKSMMSSKNF--RPSITTW 365
Query: 330 QDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIAL 382
HW++ LA ++C RL + L V + DG NS ++ IA
Sbjct: 366 SQALHWLRILARDLCARLNEAREATPGIWPKLIV--MHKRDGLQNSLTKQIAF 416
>gi|400595519|gb|EJP63314.1| impB/mucB/samB family protein [Beauveria bassiana ARSEF 2860]
Length = 799
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 196/410 (47%), Gaps = 53/410 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVT-RHMRG 62
R++A +D+D FY Q E +PLAV Q+ + +IAVNY AR G+ R
Sbjct: 164 RVVAHVDLDAFYAQCEMVRLGLPDDQPLAVQQWQS-----LIAVNYPARKAGIGGRFGSV 218
Query: 63 DEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF- 103
+AK+ CP++ V + R K + YR R ++A++ E
Sbjct: 219 SDAKKACPDLIAQHVATWREGDDKWAYRDDAAANMATDKVSLDPYRLESRRILALVREHL 278
Query: 104 -SNI--VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFV-VGFGPDNNDEDAR--- 156
N+ VE+AS+DE ++DL+ VH S L + F + P ND R
Sbjct: 279 PQNLQRVEKASVDEVFLDLSAQVH-----------SILLDRFPELQQPPPYNDPTERLPL 327
Query: 157 -KAGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAH 213
++W D D D+ ++AI IV +R+ + + ++ CSAG+A
Sbjct: 328 PSVSALDWQADALVDLDEEREGQDPDWDDVAILVGSEIVRGLRSEIRERMRYTCSAGVAC 387
Query: 214 NKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL 273
NK+L+KL G KP +Q+++ +V + + K+R+LGGKLG++VV + +L
Sbjct: 388 NKLLSKLGSGFKKPNRQTVVRNRAVGIFLHEFKLTKIRNLGGKLGEQVVSIFGTEKVEDL 447
Query: 274 EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVS 333
S++QL++ E+T WLY RG+D VN R +S+ K F + + T++
Sbjct: 448 LPVSVEQLKAKLGEETGVWLYNTIRGVDTSEVNPRTQLRSMLSAKSF--RPHINTQEQAD 505
Query: 334 HWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIAL 382
W++ ++ RL E+ + NKRR + + +S T + SR I++
Sbjct: 506 RWLRIFVGDIFNRLVEEGVLENKRRPKTIHLSARHATQTR----SRQISI 551
>gi|169623303|ref|XP_001805059.1| hypothetical protein SNOG_14888 [Phaeosphaeria nodorum SN15]
gi|160704960|gb|EAT77740.2| hypothetical protein SNOG_14888 [Phaeosphaeria nodorum SN15]
Length = 652
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 168/350 (48%), Gaps = 53/350 (15%)
Query: 4 RIIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IA +D+D FY Q E L+PSL PLAV Q+ G+IA+NY AR G++RH+
Sbjct: 44 RVIAHVDLDAFYAQCETVRLGLDPSL---PLAVQQWQ-----GLIAINYPARAFGLSRHV 95
Query: 61 RGDEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSE 102
EA + CP++ L V + + K + YR R ++ + E
Sbjct: 96 TSSEALKQCPDLILQHVATWKEGDEKWAYHEDSFKNMATHKVSLDPYRLECRRILKCIKE 155
Query: 103 F----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK- 157
VE+ASIDE ++DL+ +H + L + GP D+ +
Sbjct: 156 SLPDKEQRVEKASIDEVFMDLSGQIH-----------TILLERYPELRGPAPYDDPTERL 204
Query: 158 ----AGVMEWLGQVYSDTDTSLMENTE-DFQEL--AIAGVIVEEIRAAVLSKTQFHCSAG 210
V++W +T E+ + D+ ++ IA IV ++R + K + CS G
Sbjct: 205 PKVPTTVLDWAADALVETGEEDGEDQDPDWDDVCTVIASEIVRDVRKNIKEKLGYTCSGG 264
Query: 211 IAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTM 270
+A NK+LAKL G KP +Q+++ ++ +++ K+R LGGKLGDE V +
Sbjct: 265 VAKNKMLAKLGSGYKKPNQQTVIRNRAIKHFLSDMKFTKIRMLGGKLGDEAVAMFGTDLV 324
Query: 271 LELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRF 320
L + L+QL+ + T SWLY I RG DH VN R KS+ K F
Sbjct: 325 KSLMEQPLEQLKK-LGDDTGSWLYNIIRGEDHSEVNPRTQIKSMLSAKSF 373
>gi|388583788|gb|EIM24089.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 584
Score = 156 bits (395), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 188/381 (49%), Gaps = 55/381 (14%)
Query: 4 RIIALIDMDCFYCQVECK-LNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I D+D Y Q E K LN L P+ V Q++ G+IA++Y AR G+TRH
Sbjct: 19 RVICHADLDAAYAQFERKRLNLPLDA-PIVVQQWS-----GLIAISYPARAYGITRHENI 72
Query: 63 DEAKQHCPEIELCRVPSVR-----------------GKADISKYRNAGREVIAVLSEF-- 103
EAK+ CP + V + + K + YR G +V+ + E
Sbjct: 73 FEAKKKCPNLVPVHVATYKEGVEEPGYWNEKPSPDSHKVSLEPYRREGAKVLKCMQEIFV 132
Query: 104 SNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQ-----LSNTFVVGFG------P 148
+E+ASIDE YIDLT++V ER + + + L ++ F P
Sbjct: 133 GCEIEKASIDEQYIDLTELVRNKILERYPFLKQLPPDKTLDDVLPEPPIISFADVGNVIP 192
Query: 149 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 208
++++ + G++ +D + M+ T + + + +V E R + K + CS
Sbjct: 193 TSSEKGSD--------GEIIADEE---MQTTWEDVAIQVGAQLVAEARKIMFEKIGYTCS 241
Query: 209 AGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCS 268
AGI+HNK+LAKL KP Q++L + +V +S +K+R LGGK G+ + +
Sbjct: 242 AGISHNKILAKLCSAYKKPDDQTVLRRDAVDSFLGPMSFQKIRSLGGKFGEALAAHYDAA 301
Query: 269 TMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLAT 328
T+ +L K L ++Q F E++ W+Y RGI+ + V R+++KS+ K + + T
Sbjct: 302 TVSDLWKVPLGEMQRQFGEESI-WIYNTIRGINSDEVKERVITKSMLASKSL--RPPINT 358
Query: 329 RQDVSHWIQELADEVCERLED 349
+V HW++ L+ E+ +RL++
Sbjct: 359 VGEVRHWLKILSSELSQRLKE 379
>gi|226287048|gb|EEH42561.1| DNA polymerase eta [Paracoccidioides brasiliensis Pb18]
Length = 675
Score = 156 bits (394), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 229/500 (45%), Gaps = 92/500 (18%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R++A ID+D FY Q E +LN L +PLAV Q+ + +IAVNY AR +TR +
Sbjct: 25 RVVAHIDLDAFYAQCEMVRLNTPLT-QPLAVQQWES-----LIAVNYPARAFNITRMLTA 78
Query: 63 DEAKQHCPEIELCRVPSVR-GKADISKYRNAGREVIA----------------------V 99
EA++ CP++ V + R G+ + KYR+ E IA V
Sbjct: 79 AEARKRCPQLITQHVATFREGEGEQWKYRDDAAECIATDKVSLEPYRMESRKILEVIKTV 138
Query: 100 LSEFSN---------------------IVERASIDEAYIDLTDVVHERMKSIGHIAASQL 138
L+E + VE+A IDE ++DL+ +V+E + L
Sbjct: 139 LTERAEEVIRDVGVEGAAKGPGMEQLVRVEKAGIDEVFVDLSALVYETL----------L 188
Query: 139 SNTFVVGFGPDNNDEDARKAG----VMEWLGQVYSDTDTSLMENTEDFQE-----LAIAG 189
++ G D + R G V+EW G+ D + E ED + + +
Sbjct: 189 EWYPMLREGEVELDVNERLPGLPTTVLEW-GKEDMLVDLDVGEAEEDDPDWDDMCMLVGA 247
Query: 190 VIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKK 249
IV +RAA+ + ++ CSA IA NK++AKL +KP KQ+I+ ++ + +
Sbjct: 248 DIVRSVRAAIWERLKYTCSAAIARNKMMAKLGSSCNKPNKQTIVRNRAIQHFLSGFRFTQ 307
Query: 250 VRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARL 309
+R LGGKLG +V T + +L + ++QL+ + T +WLY I RG ++ V+ R
Sbjct: 308 IRMLGGKLGKQVSATFGTEEVGDLLRIPIEQLKLKLGDDTGTWLYEIIRGYEYSEVSMRT 367
Query: 310 VSKSIGCCKRF-PGKTCLATRQDVSHWIQELADEVCER-LEDDLTLNKRRAQLLTVSFTQ 367
KS+ K F PG + + W++ ++ R LE+ + NKRR +++T+
Sbjct: 368 KIKSMLSTKSFRPG---IKSSGQAEKWLRIFVADIYGRLLEEGVLENKRRPKVVTIH--H 422
Query: 368 ETDGKVNSCSRSI----ALASYKLQDIVEVSM-QVINKTNSAPPISDLTPPLLFLGLSAS 422
T G+ S I ++ L D+ + + QV+N+ N P + L L+ S
Sbjct: 423 RTKGQTRSRQIPIPPGRPMSDTMLFDLAKTLLAQVVNEGNIWPCAN--------LSLNVS 474
Query: 423 KFS-PLGSHPSIQQFFKPQD 441
F L + S+ FF D
Sbjct: 475 GFEDGLTGNRSLDSFFGRGD 494
>gi|242790335|ref|XP_002481538.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
stipitatus ATCC 10500]
gi|218718126|gb|EED17546.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
stipitatus ATCC 10500]
Length = 658
Score = 156 bits (394), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 180/392 (45%), Gaps = 66/392 (16%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E + PLAV Q+ + +IA+NY AR G+TR +
Sbjct: 42 RVIAHIDLDAFYAQCEMVRLGTPRDTPLAVQQWES-----LIAINYAARPFGITRMLSAT 96
Query: 64 EAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVLSE-- 102
EAK+ CPE+ L V + R K + YR R++++ + E
Sbjct: 97 EAKKRCPELVLQHVATFREGEGGTWAYRDDASKRIKTDKVSLDPYRAQSRKILSTIKEEV 156
Query: 103 -----------------FSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 144
F VE+ASIDE +IDL+ +V+ +I + +L
Sbjct: 157 SRQRDQILNSKDVVPLEFQGAKVEKASIDEVFIDLSSLVY----AILYQRYPELRKPH-- 210
Query: 145 GFGPDNNDEDAR----KAGVMEWL---GQVYSDTDTSLMENTEDFQELA--IAGVIVEEI 195
+D+ R +EW G V D + E+ D+ ++A I I+ I
Sbjct: 211 ----STSDKTTRLPSPPTTALEWSSEDGLVDLD-EQETEEDDPDWDDVAMLIGAEIIRSI 265
Query: 196 RAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGG 255
R+A+ K + CSAGIA NK+++KL +KP KQ+I+ ++ ++R LGG
Sbjct: 266 RSAIWDKLSYTCSAGIARNKMMSKLGSAQNKPNKQTIIRNRAIQNFLGGFQFTRIRMLGG 325
Query: 256 KLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIG 315
KLG+++ + EL S++Q ++ ++ TA WLY I RGID VN R KS+
Sbjct: 326 KLGEQIRAEFGTEQVKELLNISVEQFKAKLDDDTAVWLYNIIRGIDDSEVNTRTQIKSML 385
Query: 316 CCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
K F + + + W++ A ++ L
Sbjct: 386 SAKSF--RPSINSADQARKWLRIFAADLYNSL 415
Score = 43.5 bits (101), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 954 CDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTS-NISNSSSSSKILNKKSSKRGRP 1011
C +C++ + ++ +EH D+HFA +L + TS NI+ SS ++L++K + GRP
Sbjct: 583 CSRCNEEMSEDQREEHDDWHFAKDLEAQELRADQTSRNIAEQSSRRRMLDRKKTGPGRP 641
>gi|296236545|ref|XP_002763376.1| PREDICTED: DNA polymerase eta-like [Callithrix jacchus]
Length = 191
Score = 155 bits (393), Expect = 1e-34, Method: Composition-based stats.
Identities = 78/159 (49%), Positives = 109/159 (68%), Gaps = 5/159 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+ MDCF+ QVE + NP KP AVVQY +WKGGGIIAV+YEA GVTR M D
Sbjct: 7 RVVALMGMDCFFVQVEQRQNPHFRNKPCAVVQYKSWKGGGIIAVSYEAYAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V GKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESCGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDARKA 158
ER++ + I+A L +T++ G GP +E +K
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETIQKG 164
>gi|322696817|gb|EFY88604.1| sister chromatid cohesion protein Eso1 [Metarhizium acridum CQMa
102]
Length = 585
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 174/348 (50%), Gaps = 50/348 (14%)
Query: 43 GIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR------------------GKA 84
G+IAVNY AR G+ RH EA++ CP++ V + R K
Sbjct: 11 GLIAVNYPARAWGIGRHCNVTEARKLCPDLIAQHVATWREGDDKWAYRDDAAASIATDKV 70
Query: 85 DISKYRNAGREVIAVLSEF--SNI--VERASIDEAYIDLTDVVH----ERMKSIGHIAAS 136
+ YR R+++A++ + N+ VE+ASIDE ++DL+ VH ER
Sbjct: 71 SLDPYRLESRKILALIRDTLPPNLQKVEKASIDEVFLDLSAHVHTILLERF--------P 122
Query: 137 QLSNTFVVGFGPDNNDEDARKA-----GVMEWLGQVYSDTDTSLMENTEDFQELAI--AG 189
+LSN P D+ A + ++W D D D+ ++AI
Sbjct: 123 ELSN-------PPPYDDLAERLPLPSIAALDWKADALVDLDEDQESQDPDWDDVAILIGS 175
Query: 190 VIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKK 249
IV +RA V + + CSAGIA+NK+++KL G KP Q+++ +V + A+ + K
Sbjct: 176 EIVRNVRAQVHGRLGYTCSAGIANNKMVSKLGSGFKKPNSQTVVRSRAVHLFLADFKVTK 235
Query: 250 VRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARL 309
+R+LGGKLG+ VV ++ +L + SL+Q++S ++T SWL+ RGID+ VN+R
Sbjct: 236 IRNLGGKLGERVVSVFNTQSIKDLLEVSLEQMKSKLGDETGSWLHDTLRGIDNSEVNSRT 295
Query: 310 VSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRR 357
KS+ K F + ++T + W++ ++ RL ++ L+ RR
Sbjct: 296 QIKSMLSAKSF--RPSISTEEQALKWLRIFVGDIFSRLVEEGVLDNRR 341
>gi|346320479|gb|EGX90079.1| sister chromatid cohesion protein Eso1 [Cordyceps militaris CM01]
Length = 670
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 191/392 (48%), Gaps = 49/392 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA +D+D FY Q E +PLAV Q+ + +IA+NY AR G+ +
Sbjct: 43 RVIAHVDLDAFYAQCEMVRLGLPDDQPLAVQQWQS-----LIAINYPARRSGMGGRLGSV 97
Query: 64 -EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF- 103
+AK+ CP + V + R K + YR R ++A++ +
Sbjct: 98 LDAKKACPNLIAQHVATWREGDDKWAYRDDAAANMATDKVSLDPYRLESRRILALVHDHL 157
Query: 104 -SNI--VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFV-VGFGPDNNDEDAR--- 156
N+ VE+ASIDE ++DL+ VH S L + F + P ND R
Sbjct: 158 PQNLQRVEKASIDEVFLDLSAQVH-----------SILLDRFPELQQPPPYNDPSERLPM 206
Query: 157 -KAGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAH 213
++W D D D+ ++AI IV ++R+ + K ++ CSAG+A
Sbjct: 207 PSVSALDWKADALVDLDEDREGEDPDWDDVAILVGSEIVRDLRSEIREKLRYTCSAGVAC 266
Query: 214 NKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL 273
NK+L+KL G KP +Q+++ +V++ + + K+R+LGGKLG++VV + + +L
Sbjct: 267 NKLLSKLGSGYKKPNRQTVVRNRAVAVFLQDFKLTKIRNLGGKLGEQVVSIFETEQVKDL 326
Query: 274 EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVS 333
++QL++ ++T WLY RG+D VN R KS+ K F + + T+
Sbjct: 327 LPVPVEQLKAKLGDETGIWLYNTIRGVDTSEVNPRTQIKSMLSAKSF--RPYINTQDQAI 384
Query: 334 HWIQELADEVCERL-EDDLTLNKRRAQLLTVS 364
W++ A ++ RL E+ + NKRR + + +S
Sbjct: 385 KWLRIFAGDIFNRLVEEGVLENKRRPKTIHLS 416
>gi|326481425|gb|EGE05435.1| sister chromatid cohesion protein [Trichophyton equinum CBS 127.97]
Length = 642
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 193/410 (47%), Gaps = 65/410 (15%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+IA ID+D FY Q E +LN + +PLAV Q+ + +IAVNY AR GV+R +
Sbjct: 37 RVIAHIDLDAFYAQCEMIRLN-TPRDQPLAVQQWQS-----LIAVNYAARPFGVSRMITA 90
Query: 63 DEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVL---- 100
EA++ CP++ V + R K + YR R+++AV+
Sbjct: 91 AEARKLCPQLLTPHVATFREGEGENWAYREGDYSVQKDKVSLDPYRAESRKILAVMKTTL 150
Query: 101 ---------------SEFSNIV--ERASIDEAYIDLTDVVH----ERMKSIGHIAASQLS 139
SE S++V E+A IDE ++DL+ +V R + + A ++S
Sbjct: 151 LTWAEGVYEGCRGQFSEPSDMVRLEKAGIDEVFVDLSALVFGTLLHRYEILQQAATLEVS 210
Query: 140 NTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE-----LAIAGVIVEE 194
F P + + W G+ D E+ ED E + + IV+
Sbjct: 211 KDGHSAFLPRP------ETTALIW-GEDDELIDLDTGESEEDDPEWDDIVIQVGAEIVKF 263
Query: 195 IRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLG 254
+R AV + ++ CS GIA NK++AKL +KP +Q+I+ ++ + K+R LG
Sbjct: 264 VRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLG 323
Query: 255 GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSI 314
GKLG ++ + + +L L QL++ ++ T WLY I RG D V R KS+
Sbjct: 324 GKLGKKISSEFETDKISDLLTIPLDQLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSM 383
Query: 315 GCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL-NKRRAQLLTV 363
K F K LA+ W++ E+ RL D+ L NKRR +++TV
Sbjct: 384 ISAKSFNPK--LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITV 431
>gi|326468815|gb|EGD92824.1| sister chromatid cohesion protein [Trichophyton tonsurans CBS
112818]
Length = 642
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 193/410 (47%), Gaps = 65/410 (15%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+IA ID+D FY Q E +LN + +PLAV Q+ + +IAVNY AR GV+R +
Sbjct: 37 RVIAHIDLDAFYAQCEMIRLN-TPRDQPLAVQQWQS-----LIAVNYAARPFGVSRMITA 90
Query: 63 DEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVL---- 100
EA++ CP++ V + R K + YR R+++AV+
Sbjct: 91 AEARKLCPQLLTPHVATFREGEGENWAYREGDYSVQKDKVSLDPYRAESRKILAVMKTTL 150
Query: 101 ---------------SEFSNIV--ERASIDEAYIDLTDVVH----ERMKSIGHIAASQLS 139
SE S++V E+A IDE ++DL+ +V R + + A ++S
Sbjct: 151 LTWAEGVYEGCRGQFSEPSDMVRLEKAGIDEVFVDLSALVFGTLLHRYEILQQAATLEVS 210
Query: 140 NTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE-----LAIAGVIVEE 194
F P + + W G+ D E+ ED E + + IV+
Sbjct: 211 KDGHSAFLPRP------ETTALIW-GEDDELIDLDTGESEEDDPEWDDIVIQVGAEIVKF 263
Query: 195 IRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLG 254
+R AV + ++ CS GIA NK++AKL +KP +Q+I+ ++ + K+R LG
Sbjct: 264 VRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLG 323
Query: 255 GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSI 314
GKLG ++ + + +L L QL++ ++ T WLY I RG D V R KS+
Sbjct: 324 GKLGKKISSEFETDKISDLLTIPLDQLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSM 383
Query: 315 GCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL-NKRRAQLLTV 363
K F K LA+ W++ E+ RL D+ L NKRR +++TV
Sbjct: 384 ISAKSFNPK--LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITV 431
>gi|67537016|ref|XP_662282.1| hypothetical protein AN4678.2 [Aspergillus nidulans FGSC A4]
gi|40741530|gb|EAA60720.1| hypothetical protein AN4678.2 [Aspergillus nidulans FGSC A4]
gi|259482486|tpe|CBF77016.1| TPA: DNA polymerase eta (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 674
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 189/422 (44%), Gaps = 81/422 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E + +PLAV Q+++ +IA+NY AR G+TR +
Sbjct: 43 RVIAHIDLDAFYAQCEMVRLGTPRERPLAVQQWDS-----LIAINYPARKFGITRMISAK 97
Query: 64 EAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVL---- 100
EAK C +I L V + R K + YR R+++ +
Sbjct: 98 EAKAKCADIVLQHVATFREGEGGKWAYREDAWKNIGTDKVCLDPYRAESRKILGTIKREL 157
Query: 101 ----SEFSN----------------IVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN 140
SE + +VE+AS+DE +IDL+ +V + L
Sbjct: 158 SKCYSELNGDLSGLGLSSQIKLQEALVEKASVDEVFIDLSPLVFGVL----------LQR 207
Query: 141 TFVVGFGPDNNDEDAR----KAGVMEWLGQVYSDTDTSLMENTE--------DFQELA-- 186
+ P +D A +EW DT+ L++ E D+ ++A
Sbjct: 208 YPEMREKPHGDDRVALLPCPPTTALEW------DTEDCLVDLDENETEVDDPDWDDVAML 261
Query: 187 IAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLS 246
I IV +R AV + + CSAGIA NK++AKL +KP KQ+++ ++ +
Sbjct: 262 IGAEIVRSVRTAVWNSLSYTCSAGIAKNKMMAKLGSATNKPNKQTVVRNRAIQNFLSGFK 321
Query: 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVN 306
K+R LGGKLGD+V + EL K SL+Q ++ + TA WLY I RG D VN
Sbjct: 322 FTKIRMLGGKLGDQVTAMFGTEQISELLKVSLEQFRAKLNDDTAVWLYGIIRGEDKSEVN 381
Query: 307 ARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSF 365
R KS+ K F + + T W+ A ++ RL E+ + +KRR + + +
Sbjct: 382 PRTQIKSMLSAKSF--RPSINTLDQADKWLHIFAADIYGRLVEEGVLEHKRRPKTIALHH 439
Query: 366 TQ 367
Q
Sbjct: 440 RQ 441
>gi|328852695|gb|EGG01839.1| hypothetical protein MELLADRAFT_117712 [Melampsora larici-populina
98AG31]
Length = 672
Score = 155 bits (391), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 196/420 (46%), Gaps = 58/420 (13%)
Query: 4 RIIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IA D+D Y Q E K+ P KPLAV Q WKG +IAVNY AR G+TRH+
Sbjct: 24 RVIAHCDIDAAYAQFEQVRLKIAPE---KPLAVQQ---WKG--LIAVNYPAREFGITRHL 75
Query: 61 RGDEAKQHCPEIELCRVPS-VRG-----------------KADISKYRNAGREVIAVLSE 102
DEA + CP + V + +G K + YR +++ + SE
Sbjct: 76 PFDEALKKCPNLICVHVATYAQGDSETEAKYHENPKPETHKVSLDPYRRESVKILKIFSE 135
Query: 103 FSNIVERASIDEAYIDLT----DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKA 158
+++E+ASIDEA++D + D++ R + ++ S+ +N + F P D +
Sbjct: 136 SCDLIEKASIDEAFLDFSIPVRDILINRYSDL--LSTSKTNN--LDDFLPPPPQLDWKST 191
Query: 159 GVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLA 218
L S+ D +M T L I ++ + R AV + + CSAG+ NK+LA
Sbjct: 192 EHNLILNTSDSEVD-EMMTTTWTDVALMIGAELMAQCRKAVFDQLGYTCSAGVTSNKMLA 250
Query: 219 KLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC----------- 267
KL KP Q++L S + +L + K+R LGGKLG ++E +
Sbjct: 251 KLCSSYKKPNAQTVLRPSCIKSFLRDLEVSKIRFLGGKLGKSLIELIHHPSQATAAEEEA 310
Query: 268 -----STMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPG 322
+T+ E+ L LQ+ ++T W++ I RGID V + KS+ K F
Sbjct: 311 EESIRTTVGEVWNLDLSLLQNKLGDETGMWVWEIVRGIDKTEVEPKTQVKSMMSSKNF-- 368
Query: 323 KTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIAL 382
+ +++ ++ HW++ L+ ++ RL + TL V + DG NS ++ I
Sbjct: 369 RPSISSWEEGIHWLRILSTDLLARLNEARTLTPGIWPKTIV--MHKRDGNYNSTAKQIGF 426
>gi|260813031|ref|XP_002601223.1| hypothetical protein BRAFLDRAFT_225416 [Branchiostoma floridae]
gi|229286515|gb|EEN57235.1| hypothetical protein BRAFLDRAFT_225416 [Branchiostoma floridae]
Length = 397
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 119/353 (33%), Positives = 172/353 (48%), Gaps = 52/353 (14%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
TSR+I ID+DCFY QVE +PSL KPL + Q ++ NY AR GVT+ M
Sbjct: 13 TSRVIVHIDVDCFYAQVEMIRDPSLRDKPLGIQQKYI-----VVTCNYVARKHGVTKLMG 67
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CPE+ L V+G+ D++ YR + L +FS +VER DE ++D+T+
Sbjct: 68 IKQAKELCPELVL-----VKGE-DLTHYREMSYRITVTLQKFSPLVERLGFDENFVDVTE 121
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT-E 180
V R+KS F P N G ++ + + +E T E
Sbjct: 122 TVDARLKST---------------FSPQLN-------------GHIFPEME---IEGTYE 150
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+ LA I E+R A+ S C AGIAHNK+LAKLV G HKP +Q+ L V
Sbjct: 151 RHKRLACGSQIAAEMRQALHSDLGITCCAGIAHNKLLAKLVAGQHKPNQQTSLLPGGVGK 210
Query: 241 LYANLSIKKVRHLGGKLGDEV---VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
L L K R++ G +G ++TL ST+ +L+ LQ+ F +TA + +
Sbjct: 211 LMGTL--KTARNIPG-IGSRTFKRLQTLGISTVQDLQDAPADVLQAEFGSQTAQVMQQLC 267
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
RG+D PV ++I F K C A+ QD + L + +RL+ D
Sbjct: 268 RGVDPSPVTPTGPPQTISDEDSF--KKC-ASLQDAKERMTGLLQSLMKRLKGD 317
>gi|171676163|ref|XP_001903035.1| hypothetical protein [Podospora anserina S mat+]
gi|170936147|emb|CAP60807.1| unnamed protein product [Podospora anserina S mat+]
Length = 696
Score = 154 bits (389), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 111/390 (28%), Positives = 184/390 (47%), Gaps = 40/390 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++A +D+DCFY QVE KPLAV Q W+ G+IAVNY AR + RH
Sbjct: 44 RVVAHLDLDCFYAQVEMVRLGIPEDKPLAVQQ---WERQGLIAVNYPARAFKIGRHCTVT 100
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF-- 103
EA++ CPE+ V + R K + YR R ++ V+ E
Sbjct: 101 EARRLCPELIAQHVATWREGDDKWAYREDAAEHIATDKVSLDPYRLESRRIMRVIKEHLP 160
Query: 104 ---SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGV 160
VE+ASIDE ++DLT VH+ M +L +G + +
Sbjct: 161 GGGLQKVEKASIDEVFLDLTAHVHQVML---ERYGEELGGP--PPYGDVSEELPMPVVTA 215
Query: 161 MEWLGQVYSDTDTSLMENTE----DFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHN 214
++W D + E D+ ++A +A IV +R + K + CSAG++ N
Sbjct: 216 LDWKADALVDLGEGDRQEGEFDDPDWDDVALLVASEIVRNVRGVIREKLGYSCSAGVSRN 275
Query: 215 KVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELE 274
K+L+KL KP +Q+++ +V + K+R+LGGKLG++V + + + +L
Sbjct: 276 KLLSKLGSAHKKPDQQTVIRNRAVGHFLSGFKFTKIRNLGGKLGEQVADAFKTEAVSDLL 335
Query: 275 KFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSH 334
++QL+ ++ W+Y RGID VN+ KS+ K F + + T + +
Sbjct: 336 TVPIEQLKQKLGDENGVWIYETLRGIDTSEVNSGTQIKSMLSAKSF--RPDITTVEQATK 393
Query: 335 WIQELADEVCERL-EDDLTLNKRRAQLLTV 363
W++ A ++ RL E+ + +KRR + + +
Sbjct: 394 WLRIFAADIFARLVEEGVLEHKRRPKTINL 423
>gi|327301129|ref|XP_003235257.1| sister chromatid cohesion protein [Trichophyton rubrum CBS 118892]
gi|326462609|gb|EGD88062.1| sister chromatid cohesion protein [Trichophyton rubrum CBS 118892]
Length = 645
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 199/418 (47%), Gaps = 81/418 (19%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+IA ID+D FY Q E +LN + +PLAV Q+ + +IAVNY AR GV+R +
Sbjct: 37 RVIAHIDLDAFYAQCEMIRLN-TPRDQPLAVQQWQS-----LIAVNYAARPFGVSRMITA 90
Query: 63 DEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVL---- 100
EA++ CP++ V + R K + YR R+++AVL
Sbjct: 91 AEARKLCPQLLTPHVATFREGEGEHWAYREGDYSVQKDKVSLDPYRAESRKILAVLKTTL 150
Query: 101 ---------------SEFSNIV--ERASIDEAYIDLTDVV-------HERMKSIGHIAAS 136
SE S++V E+A IDE ++DL+ +V +E ++ + S
Sbjct: 151 LTWAEGVYDGCRGQFSEPSDMVRLEKAGIDEVFVDLSALVFGTLLHRYEILRRAATLDGS 210
Query: 137 QLS-NTFV-------VGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAI- 187
+ NTF+ + +G D+ D DT S E+ ++ ++AI
Sbjct: 211 KDGPNTFLPRPETTALIWGEDDELIDL--------------DTGES-EEDDPEWDDIAIQ 255
Query: 188 -AGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLS 246
IV+ +R AV + ++ CS GIA NK++AKL +KP +Q+I+ ++ +
Sbjct: 256 VGAEIVKFVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYK 315
Query: 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVN 306
K+R LGGKLG ++ + + +L L +L++ ++ T WLY I RG D V
Sbjct: 316 FTKIRSLGGKLGKKISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQIIRGEDDSEVT 375
Query: 307 ARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL-NKRRAQLLTV 363
R KS+ K F K LA+ W++ E+ RL D+ L NKRR +++TV
Sbjct: 376 PRTEIKSMISAKSFNPK--LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITV 431
>gi|213410204|ref|XP_002175872.1| sister chromatid cohesion protein Eso1 [Schizosaccharomyces
japonicus yFS275]
gi|212003919|gb|EEB09579.1| sister chromatid cohesion protein Eso1 [Schizosaccharomyces
japonicus yFS275]
Length = 884
Score = 153 bits (386), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 191/383 (49%), Gaps = 39/383 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
+++ +D D FY QVE H PLAV Q++ +IAVNY AR G+TR +
Sbjct: 27 KVVVHVDQDAFYAQVETVRLKLDHSVPLAVQQWD-----NLIAVNYAARPYGITRFDTAE 81
Query: 64 EAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVLSEFSNIV 107
AK+ CPE+ L V + + K + YRN ++++ +LS++S +V
Sbjct: 82 NAKKKCPELNLAHVQTWKVGEREPKYHEKPEWESHKVCLDMYRNESKKILGILSKYSKLV 141
Query: 108 ERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW---L 164
++ASIDE+++DLT + +++ + + +G P++ A + W L
Sbjct: 142 KKASIDESFVDLTAEIKKKL----------IQDYSFLGVPPEDLSLPLPTAPTVLWTEEL 191
Query: 165 GQVYSDTDTSLME--NTEDFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKL 220
G+V+ + + L E N D+ E L IV+EIR + + + CSAGI+ N +L+K+
Sbjct: 192 GRVFGEEEGLLSEAKNGGDWDEVFLHYGARIVKEIRNEIFNTLGYTCSAGISRNAMLSKI 251
Query: 221 VCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQ 280
+ +KP KQ++L S V A++ + ++R GGK G+E+ + L + ++ + +
Sbjct: 252 LSSKNKPNKQTVLLNSMVDHYLADVRLSELRLFGGKYGEELGKKLNAEYIKDIRAIPMDE 311
Query: 281 LQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELA 340
L ++ A ++ + GID+ + ++S+ K F ++ L + ++ W + A
Sbjct: 312 LIRILGDRDAQVVWNVCNGIDNSEITNVNNTQSMLSAKNFL-RSKLKSSEEAMKWFRVFA 370
Query: 341 DEVCERLEDDLTLNKRRAQLLTV 363
++ R D + + + +L V
Sbjct: 371 SDLMSRYMDVEQIKRPKTFVLNV 393
Score = 43.1 bits (100), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 948 DPTKIICDKCSQPIDINELQEHQDYHFALELSTTSE--PP 985
D + C+KCS I E QEH DYHFALE+S S+ PP
Sbjct: 535 DDSVYYCEKCSTNIPWEEKQEHDDYHFALEISKESDEVPP 574
>gi|302419901|ref|XP_003007781.1| DNA polymerase IV [Verticillium albo-atrum VaMs.102]
gi|261353432|gb|EEY15860.1| DNA polymerase IV [Verticillium albo-atrum VaMs.102]
Length = 631
Score = 152 bits (385), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 182/397 (45%), Gaps = 69/397 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E + +PLAV Q+ G+IA+NY AR G+ RH
Sbjct: 42 RVIAHIDLDAFYAQCEMVRLDTPEDQPLAVQQWQ-----GLIAINYPARSFGIGRHCTLA 96
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF-- 103
EA++ CP++ V + R K + YR R+++A++ E
Sbjct: 97 EARKLCPDLIAQHVATWREGDDKWAYRDDAAANITSDKVSLDPYRLQSRKILALIKETLP 156
Query: 104 SNI--VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161
S++ VE+ASIDE + L GP +
Sbjct: 157 SDLQKVEKASIDEVFCYL---------------------------GP--------PVVAL 181
Query: 162 EWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
+W D D D+ ++AI I+ +RA + + CSAGIA+NK+L+K
Sbjct: 182 DWQADALIDLDEDAENQDPDWDDVAILIGSEIIRGVRARIHEVLHYTCSAGIANNKMLSK 241
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLK 279
L KP +Q+++ +V ++ K+R+LGGKLGD +V T T+ +L L
Sbjct: 242 LGSAHKKPNQQTVIRNRAVQQFLSDFKFTKIRNLGGKLGDTIVNTFNTDTVKDLLPTPLD 301
Query: 280 QLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQEL 339
Q+++ ++T W+Y RGID VN+R KS+ K F + + T + W++
Sbjct: 302 QMKARLGDETGIWVYNTIRGIDQSEVNSRTQIKSMLSAKSF--RPSIHTPDQGNRWLRIF 359
Query: 340 ADEVCERL-EDDLTLNKRRAQLLTVSFTQETDGKVNS 375
++ RL E+ + NKRR + T++ G++ S
Sbjct: 360 VADIFSRLVEEGVLENKRRPK--TINLHHRHGGQMKS 394
>gi|302501757|ref|XP_003012870.1| hypothetical protein ARB_00752 [Arthroderma benhamiae CBS 112371]
gi|291176431|gb|EFE32230.1| hypothetical protein ARB_00752 [Arthroderma benhamiae CBS 112371]
Length = 644
Score = 152 bits (385), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 195/414 (47%), Gaps = 73/414 (17%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+IA ID+D FY Q E +LN + +PLAV Q+ + +IAVNY AR GV+R +
Sbjct: 37 RVIAHIDLDAFYAQCEMIRLN-TPRDQPLAVQQWQS-----LIAVNYAARPFGVSRMITA 90
Query: 63 DEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVL---- 100
EA++ CP++ V + R K + YR R+++AV+
Sbjct: 91 AEARKLCPQLLTPHVATFREGEGEHWAYREGDYSVQKDKVSLDPYRAESRKILAVMKNTL 150
Query: 101 ---------------SEFSNIV--ERASIDEAYIDLTDVV-------HERMKSIGHIAAS 136
SE S++V E+A IDE ++DL+ +V +E ++ + S
Sbjct: 151 LTWAEEVYEGCRGQFSEPSDMVRLEKAGIDEVFVDLSALVFGTLLHRYEILRRAATLDGS 210
Query: 137 QLS-NTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE-----LAIAGV 190
+ NTF+ P+ + W G+ D E+ ED E + +
Sbjct: 211 KDDPNTFLPR--PETT--------ALVW-GEDDELIDLDTGESEEDDPEWDDIVIQVGAE 259
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
IV+ +R AV + ++ CS GIA NK++AKL +KP +Q+I+ ++ + K+
Sbjct: 260 IVKFVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKI 319
Query: 251 RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLV 310
R LGGKLG + + + +L L +L++ ++ T WLY I RG D V R
Sbjct: 320 RSLGGKLGKRISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQIIRGEDDSEVTPRTE 379
Query: 311 SKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL-NKRRAQLLTV 363
KS+ K F K LA+ W++ E+ RL D+ L NKRR +++TV
Sbjct: 380 IKSMISAKSFNPK--LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITV 431
>gi|315048855|ref|XP_003173802.1| DNA polymerase eta [Arthroderma gypseum CBS 118893]
gi|311341769|gb|EFR00972.1| DNA polymerase eta [Arthroderma gypseum CBS 118893]
Length = 646
Score = 152 bits (384), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 188/405 (46%), Gaps = 55/405 (13%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E + +PLAV Q+ + +IAVNY AR GV+R + +
Sbjct: 39 RVIAHIDLDAFYAQCEMIRLGTPRDQPLAVQQWQS-----LIAVNYAARPFGVSRMITAE 93
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVL----- 100
EA++ CP++ V + R K + YR R+++A +
Sbjct: 94 EARKLCPQLLTPHVATFREGEGENWAYRDGDYSVQKDKVSLDPYRAESRKILATMKATLL 153
Query: 101 --------------SEFSNIV--ERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 144
SE S++V E+A IDE ++DL+ +V + + +L+ TF
Sbjct: 154 TWAEGVYEGCRDQFSEPSDMVRLEKAGIDEVFVDLSALVFGTL--LQRYEVLRLAGTFEG 211
Query: 145 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE-----LAIAGVIVEEIRAAV 199
N + + W G+ D E+ ED E + + IV+ +R AV
Sbjct: 212 SKDSPNRLLPRPETTALLW-GEDDELIDLDTGESEEDDPEWDDVVIQVGAEIVKFVRTAV 270
Query: 200 LSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGD 259
+ ++ CS GIA NK++AKL +KP +Q+I+ ++ + K+R LGGKLG
Sbjct: 271 WDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLGK 330
Query: 260 EVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKR 319
++ + + +L L +L++ ++ T WLY I RG D V R KS+ K
Sbjct: 331 KIASEFETDKISDLLNIPLDRLKNKLDDDTGVWLYQIIRGEDDCEVTPRTEIKSMISAKS 390
Query: 320 FPGKTCLATRQDVSHWIQELADEVCERLEDDLTL-NKRRAQLLTV 363
F K L + W++ E+ RL D+ L NKRR +++TV
Sbjct: 391 FNPK--LVSLDQGEKWMRIFVAEIYGRLIDEGVLENKRRPKMITV 433
>gi|325190748|emb|CCA25240.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 619
Score = 152 bits (384), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 144/508 (28%), Positives = 235/508 (46%), Gaps = 96/508 (18%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +D+DCFY QVE +LN +P+A Q+ G ++AVNY AR GV R +
Sbjct: 11 RVIVHLDLDCFYAQVEGLRLNIP-ESEPIAAHQW-----GFVLAVNYVARQYGVKRGDQI 64
Query: 63 DEAKQHCPEIELCRV------------PSVRG--KADISKYRNAGREVIAVLSEFSNIVE 108
DEA + CP+I + V P R KA + +YR+A + VL + I E
Sbjct: 65 DEALKKCPKIHIPHVEVLGENRLRNGEPYDRAHQKATLRRYRDASNAIFKVLRRHAVICE 124
Query: 109 RASIDEAYIDLTDVVHERMKSI----GHIAASQLS-NTFVVGFGPDNNDEDARKAGVMEW 163
RA IDEAY+D+T+ E + ++ + L+ +T V G + +++G++E
Sbjct: 125 RAGIDEAYLDVTERATELLANMEVQMHDFCMNALNRDTLVYGVC------ERKRSGIIER 178
Query: 164 LGQVYSDTDTSLMEN--------------TEDFQELAIAGVIVEEIRAAVLSKTQFHCSA 209
+ TDTS E TE+ Q L + +I EIR AV ++ + CS
Sbjct: 179 KCK----TDTSEDECDENETIVTSESFPLTEEEQLLCVGALISREIREAVYTELGYRCST 234
Query: 210 GIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVE---TLQ 266
GI+ NK++AKL L+KP Q+I+ V +L + I+KVR LGGKLG ++E
Sbjct: 235 GISTNKLIAKLASPLNKPNGQTIVSPRFVPLLMRHHPIQKVRGLGGKLGHRMMEYYDQFV 294
Query: 267 CS--------------TMLE----------------LEKFSLKQLQSHFEEKTASWLYYI 296
CS TM ++ SL L ++F +TA+++Y +
Sbjct: 295 CSKEKQENKEPQKYQNTMESGGKRDEIKSKITAGDFIQACSLSSLSAYFGNETAAFVYRL 354
Query: 297 ARGID-HEPVNARLVS-KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
G D +EPV+ V K K+F + + + +W++ +++E+ +R+ ++ +
Sbjct: 355 CLGDDGNEPVDGDKVDLKGFSSTKQFTPNSHIQNEPQLRYWLRIISEEMMDRINEEKHDH 414
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVI-NKTNSAPPISDLTPP 413
+R +T+ T + C R S L + +S + + N+ + P+S +T
Sbjct: 415 RRFPVHVTLHIT--SSNGTTKCRRIYVNQSVTLDTLARLSFRSLENELDQILPLSHMT-- 470
Query: 414 LLFLGLSASKFSPLG-SHPSIQQFFKPQ 440
L A F + SI FF Q
Sbjct: 471 -----LHAKDFISIADKKASISSFFSKQ 493
>gi|417412383|gb|JAA52580.1| Putative dna polymerase iota/dna damage inducible protein, partial
[Desmodus rotundus]
Length = 703
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/348 (30%), Positives = 174/348 (50%), Gaps = 43/348 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L GKPL V Q ++ NYEAR GV + M
Sbjct: 14 SSRVIVHVDLDCFYAQVEMISNPELKGKPLGVQQKFL-----VVTCNYEARELGVKKLMT 68
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++D+T+
Sbjct: 69 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDITE 122
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + S L + G VY+D +L N
Sbjct: 123 MVEKRLQQLQSDDLSALPVS-----------------------GHVYNDQSVNL--NDVL 157
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ L + + E+R A+ + AG+A NK+LAKLV G+ KP +Q++ LP+SS +
Sbjct: 158 HRRLLVGSQMAAEMREAMCDRLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDL 217
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IKK+ +G K +E L S++ +L+ FS K L+ A + ++ G
Sbjct: 218 IHSLKHIKKMPGIGYKTARR-LEALGVSSVQDLQTFSSKVLEKELGISVAQRIQKLSFGE 276
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTC---LATRQDVSHWIQELADEVCE 345
D+ PV + +S F K C + + + + L + VC+
Sbjct: 277 DNSPVTPSGLPQSFSEEDSF--KKCSSEVEAKSKIEELLASLLNRVCQ 322
>gi|116193781|ref|XP_001222703.1| hypothetical protein CHGG_06608 [Chaetomium globosum CBS 148.51]
gi|88182521|gb|EAQ89989.1| hypothetical protein CHGG_06608 [Chaetomium globosum CBS 148.51]
Length = 661
Score = 150 bits (380), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 180/386 (46%), Gaps = 48/386 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ ID+DCFY Q E +PLAV Q W G I+ H+ R + D
Sbjct: 42 RVVTHIDLDCFYAQAEMVRLGVPEDRPLAVQQ---WCGLPIV-------HRSRIRELIRD 91
Query: 64 EAKQ-----HCPEIELCRVPSVR---------GKADISKYRNAGREVIAVLSEF--SNI- 106
AK P L P+ R K + YR R ++AV+ E S++
Sbjct: 92 IAKAGPHRCQLPSTCLWDWPAYRPDSAENIATDKVSLDPYRLESRRILAVIKEHLPSHLQ 151
Query: 107 -VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDE----DARKAGVM 161
VE+A IDE ++DL+ H+ A L + GP + D +
Sbjct: 152 KVEKAGIDEVFLDLS----------AHVHAVLLERFPELAGGPPDGDPFEHLPMPPVSAL 201
Query: 162 EWLGQVYSDTDTSLME-NTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLA 218
+W D D E + D+ ++A +A IV IR A+ K ++ C+AGIA NK+L+
Sbjct: 202 DWKADALIDLDEERAEFDDPDWDDVAFLVASEIVRNIRVAIRDKLRYTCAAGIAKNKLLS 261
Query: 219 KLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSL 278
KL KP +Q+++ +V + K R+LGGKLG++V +T + ++ EL S+
Sbjct: 262 KLGSAHKKPNQQTVIRNRAVRQFLSGFKFTKFRNLGGKLGEQVSQTFKTESVQELLAVSI 321
Query: 279 KQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQE 338
QL+S F +T +W+Y RG D VN+R KS+ K F + + T W++
Sbjct: 322 DQLKSKFGAETGAWVYNTLRGYDTSEVNSRTQIKSMLSAKSF--RPSINTVDQAMKWLRI 379
Query: 339 LADEVCERLEDDLTL-NKRRAQLLTV 363
A ++ RL D+ L NKRR + + +
Sbjct: 380 FAADIFARLVDEGVLENKRRPKTINL 405
>gi|302668344|ref|XP_003025744.1| hypothetical protein TRV_00071 [Trichophyton verrucosum HKI 0517]
gi|291189871|gb|EFE45133.1| hypothetical protein TRV_00071 [Trichophyton verrucosum HKI 0517]
Length = 645
Score = 150 bits (380), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 190/410 (46%), Gaps = 65/410 (15%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+IA ID+D FY Q E +LN + +PLAV Q+ + +IAVNY AR GV+R +
Sbjct: 38 RVIAHIDLDAFYAQCEMIRLN-TPRDQPLAVQQWQS-----LIAVNYAARPFGVSRMITA 91
Query: 63 DEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVL---- 100
EA++ CP++ V + R K + YR R+++AV+
Sbjct: 92 AEARKLCPQLLTPHVATFREGEGENWAYREGDYSVQKDKVSLDPYRAESRKILAVMKTTL 151
Query: 101 ------------SEFSNI-----VERASIDEAYIDLTDVVH----ERMKSIGHIAASQLS 139
+FS+ +E+A IDE ++DL+ +V R + + A S
Sbjct: 152 LTWAEGIYEGCRGQFSDPSDMVRLEKAGIDEVFVDLSALVFGTLLHRYEILRRAATPDGS 211
Query: 140 NTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE-----LAIAGVIVEE 194
GP+ ++ D DT E+ ED E + + IV+
Sbjct: 212 KD-----GPNTFLPRPETTALIWGEDDELIDLDTG--ESEEDDPEWDDIVIQVGAEIVKF 264
Query: 195 IRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLG 254
+R AV + ++ CS GIA NK++AKL +KP +Q+I+ ++ + K+R LG
Sbjct: 265 VRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLG 324
Query: 255 GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSI 314
GKLG ++ + + +L L +L++ ++ T WLY I RG D V R KS+
Sbjct: 325 GKLGKKISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSM 384
Query: 315 GCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL-NKRRAQLLTV 363
K F K LA+ W++ E+ RL D+ L NKRR +++TV
Sbjct: 385 ISAKSFNPK--LASLDQAEKWMRIFVAELYGRLVDEGVLENKRRPKMITV 432
>gi|407421058|gb|EKF38800.1| DNA polymerase eta, putative [Trypanosoma cruzi marinkellei]
Length = 521
Score = 150 bits (379), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 118/436 (27%), Positives = 210/436 (48%), Gaps = 41/436 (9%)
Query: 1 MTSRIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRH 59
++ R I +DMDCFY QVE +L +P + Q+ G +IAVNY AR G+ R
Sbjct: 17 LSMRCIVHLDMDCFYAQVEAVRLGIDCRTEPYILSQW-----GNLIAVNYPARKCGIARF 71
Query: 60 MRGDEAKQHCPEIELCRVP--------------SVRG--KADISKYRNAGREVIAVLSEF 103
++A++ CP +++ V S +G K + YR A R++ +L F
Sbjct: 72 DTVEKAREKCPHVKISHVATYAVGDTEYKYHENSRKGTHKVSLEPYREASRKIFNILCSF 131
Query: 104 SNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVME 162
+ VE+ S+DEAY+D+T + SI ++++Q S+ + N R+A +
Sbjct: 132 EGVEVEKGSVDEAYLDVTLAAQRELASI-RLSSAQCSSHLEDVMHHETNVIPDRQADIDA 190
Query: 163 WL---GQVYSDT-DTSLME--NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 216
W G+ +++ DT+L E L A +V ++R + + ++ CSAGIAHNK+
Sbjct: 191 WFFEKGKGFNEVFDTALHPPVTVEHQLLLGAASRVVWKLREKIYQELRYDCSAGIAHNKI 250
Query: 217 LAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTML-ELEK 275
LAK + HKP +Q++L V+ + + +R GGK G+ V + + +
Sbjct: 251 LAKSISSRHKPNQQTLLLPDRVASAVWDTPYQSIRGFGGKFGECVCRACGGAELFRDAWL 310
Query: 276 FSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
L++LQS + ++ +Y R E + + V+K++ K F T ++ + + W
Sbjct: 311 VPLEKLQSVLGDDDGAYAFYRLRCHGKEKIKEQSVTKTLMASKSFSPPT--SSSEGLRKW 368
Query: 336 IQELADEVCERLEDDLTLNKRRAQLLTVSF----TQETDGKVNSCSRSIALASY-KLQDI 390
I L+ E+C R ++ N + Q L V ++ G +NS ++AL + +
Sbjct: 369 ITVLSSELCARYKEFCETNNAKGQRLNVKLGNQGLRQLGGVLNS---TLALPELVTTETL 425
Query: 391 VEVSMQVINKTNSAPP 406
+ +MQ++ T + P
Sbjct: 426 IAATMQIVLATFARHP 441
>gi|407842286|gb|EKG01044.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 120/435 (27%), Positives = 207/435 (47%), Gaps = 45/435 (10%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R I +DMDCFY QVE +L +P + Q+ G +IAVNY AR G+ R
Sbjct: 2 RCIVHLDMDCFYAQVEAVRLGIDCRTEPYILSQW-----GNLIAVNYPARKCGIARFDTV 56
Query: 63 DEAKQHCPEIELCRVPSV--------------RG--KADISKYRNAGREVIAVLSEFSNI 106
++A++ CP +++ V + +G K + YR A R++ +L F +
Sbjct: 57 EKAREKCPHVKVSHVATYAVGDTEYKYHENARKGTHKVSLEPYREASRKIFNILRSFEGV 116
Query: 107 -VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL- 164
VE+ S+DEAY+D+T + SI + ++Q S+ P+ N R+A + WL
Sbjct: 117 EVEKGSVDEAYLDVTLAAQRELASI-RLPSAQCSSHLEDVMHPETNVIPDRRAEIDAWLF 175
Query: 165 --GQVYSDT-DTSLM--ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
G+ +++ DT+L + E L A +V ++R + + + CSAGIAHNK+LAK
Sbjct: 176 EKGKEFNEIFDTALHPHDTVEHQLLLGAASRVVWKLREKIYQELCYDCSAGIAHNKILAK 235
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEV------VETLQCSTMLEL 273
+ HKP +Q++L V+ + + +R GGK G+ V E + + ++ L
Sbjct: 236 SISSRHKPNQQTLLLPDRVASAVWDAPYQSIRGFGGKFGESVFRACGNAELFRDAWLVPL 295
Query: 274 EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVS 333
EK LQS ++ +Y R E + + V+K++ K F T ++ + +
Sbjct: 296 EK-----LQSVLGVDDGTYAFYRLRCHGKEKIKEQSVTKTLMASKSFSPPT--SSSEGLR 348
Query: 334 HWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCS-RSIALASY-KLQDIV 391
WI L+ E+C R ++ N + Q L V + ++ S ++AL + ++
Sbjct: 349 KWITVLSSELCARYKEFCETNNAKGQRLNVKLGNQGLRQLGGVSNNTLALPELVTTETLI 408
Query: 392 EVSMQVINKTNSAPP 406
+MQ++ T P
Sbjct: 409 AATMQIVLATFVRHP 423
>gi|413943903|gb|AFW76552.1| hypothetical protein ZEAMMB73_679088 [Zea mays]
Length = 409
Score = 149 bits (377), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 121/204 (59%), Gaps = 21/204 (10%)
Query: 56 VTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEA 115
V+ MRGDEAK+ CP I L +VP RGKAD++ YR+AG EV+A+L+ ERASIDE
Sbjct: 131 VSLLMRGDEAKRVCPGINLVQVPVARGKADLNLYRSAGAEVVAILAS-KGKCERASIDEV 189
Query: 116 YIDLTDVVHERMKSI------GHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYS 169
Y+DLTD E + G + SN ++G D ++++ V WL Q +
Sbjct: 190 YLDLTDAAKEMLLQAPPDSPEGIFMEAAKSN--ILGLPADASEKEKN---VRAWLCQSEA 244
Query: 170 DTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQK 229
D L L +IV ++R VL +TQF CSAGIAHNK+LAKLV G+ KP +
Sbjct: 245 DYQDKL---------LTCGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMRKPAQ 295
Query: 230 QSILPQSSVSMLYANLSIKKVRHL 253
Q+++P SSV L A+L +KK+ H+
Sbjct: 296 QTVVPSSSVQDLLASLPVKKMYHV 319
>gi|71656413|ref|XP_816754.1| DNA polymerase eta [Trypanosoma cruzi strain CL Brener]
gi|70881903|gb|EAN94903.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 149 bits (377), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 119/430 (27%), Positives = 205/430 (47%), Gaps = 45/430 (10%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R I +DMDCFY QVE +L +P + Q+ G +IAVNY AR G+ R
Sbjct: 2 RCIVHLDMDCFYAQVEAVRLGIDCRTEPYILSQW-----GNLIAVNYPARKCGIARFDTV 56
Query: 63 DEAKQHCPEIELCRVPSV--------------RG--KADISKYRNAGREVIAVLSEFSNI 106
++A++ CP +++ V + +G K + YR A R++ +L F +
Sbjct: 57 EKAREKCPHVKVSHVATYAVGDTEYKYHENARKGTHKVSLEPYREASRKIFNILRSFEGV 116
Query: 107 -VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL- 164
VE+ S+DEAY+D+T + SI + ++Q S+ P+ N R+A + WL
Sbjct: 117 EVEKGSVDEAYLDVTLAAQRELASI-RLPSAQCSSHLEDVMHPETNVIPDRRAEIDAWLF 175
Query: 165 --GQVYSDT-DTSL--MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
G+ +++ DT+L E L A +V ++R + + + CSAGIAHNK+LAK
Sbjct: 176 EKGKEFNEIFDTALHPQATVEHQLLLGAASRVVWKLREKIYQELCYDCSAGIAHNKILAK 235
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEV------VETLQCSTMLEL 273
+ HKP +Q++L V+ + + +R GGK G+ V E + + ++ L
Sbjct: 236 SISSRHKPNQQTLLLPDRVASAVWDAPYQSIRGFGGKFGESVCRACGNAELFRDAWLVPL 295
Query: 274 EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVS 333
EK LQS ++ +Y R E + + V+K++ K F T ++ + +
Sbjct: 296 EK-----LQSVLGVDDGAYAFYRLRCHGKEKIKEQSVTKTLMASKSFSPPT--SSSEGLR 348
Query: 334 HWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCS-RSIALASY-KLQDIV 391
WI L+ E+C R ++ N + Q L V + ++ S ++AL + ++
Sbjct: 349 KWITVLSSELCARYKEFCETNNAKGQRLNVKLGNQGLRQLGGVSNNTLALPELVTTETLI 408
Query: 392 EVSMQVINKT 401
+MQ++ T
Sbjct: 409 AATMQIVLAT 418
>gi|429859010|gb|ELA33810.1| sister chromatid cohesion protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 567
Score = 149 bits (376), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 174/375 (46%), Gaps = 46/375 (12%)
Query: 4 RIIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R++AL+D D FY Q E L PS KPLAV Q+N IIA+NY A+ +GV R M
Sbjct: 37 RVVALVDYDSFYAQYETLRLGLPPS---KPLAVRQWN-----AIIALNYAAKERGVKRIM 88
Query: 61 RGDEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSE 102
DEA++ CP+I L VP+ R KA + YR R+ + ++ +
Sbjct: 89 SADEARRICPDIVLQHVPTWREGDDRWRYRDDVLDHLKTDKASLDPYRGVSRKTMHLVRK 148
Query: 103 F-----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK 157
+ +ERA +DE Y+DL+ VH + + +N + + P + A
Sbjct: 149 LLPAKPAPTIERAGVDEFYLDLSAQVHRTL--VERFPTLTPTNKSLDNYLPLPAADTA-- 204
Query: 158 AGVMEWLG---QVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHN 214
++W + +D D L+I G IV IR + + Q SAGI+ N
Sbjct: 205 ---LQWSKDKIMIPADLQDPDDVLDWDDVVLSIGGSIVRHIREEIKKQLQLTTSAGISCN 261
Query: 215 KVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELE 274
K+LAK ++KP Q+IL + S+ ++ L + LG +LG +VV+T + +L
Sbjct: 262 KMLAKAASRMNKPAGQTILRRKSIPIIMPTLKATSLSGLGRQLGQKVVKTFGSDNIRDLL 321
Query: 275 KFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSH 334
+ SL +++ + W+Y RG + PV R +S+ K F K Q
Sbjct: 322 QVSLTEMRLQLGAEDGQWVYNAIRGDEKGPVRPRSEVQSLLAAKTFIPKA--ENLQQADK 379
Query: 335 WIQELADEVCERLED 349
W++ A ++ RL D
Sbjct: 380 WLRIFAADLESRLHD 394
>gi|345566460|gb|EGX49403.1| hypothetical protein AOL_s00078g436 [Arthrobotrys oligospora ATCC
24927]
Length = 776
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/372 (28%), Positives = 170/372 (45%), Gaps = 36/372 (9%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IA ID+D FY Q E +PLAV Q++ AVNY AR G+TR
Sbjct: 38 RVIAHIDLDAFYAQCEMVRLGVPEDQPLAVQQWD--------AVNYPARSFGITRMRNVA 89
Query: 64 EAKQHCPEIELCRVPSVR--------------------GKADISKYRNAGREVIAVLSEF 103
+AK+ CP + V + R K + YR ++++A+ E
Sbjct: 90 DAKRKCPTLMAVHVATWRVQNDTAVMGYHDMTNASISTDKVSLDHYRRESKKILAIFREG 149
Query: 104 SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW 163
VE+AS+DE+++DL+ +V ++ + V +G + +EW
Sbjct: 150 CPKVEKASVDESFLDLSGLVFGKLLERFEEELGVVDGEIVPPYGDTTERLRMPEVAGVEW 209
Query: 164 LGQVYSDTDTSLMENTE--DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
D D E D+ + + IA IV +IR V + + CSAGI+ NK+LAK
Sbjct: 210 GNSHLVDLDDGEEGEEEPIDWDDIIMGIAAEIVADIRGEVRRRLGYTCSAGISRNKMLAK 269
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLK 279
L G KP +Q+I+ +V+ +++ +R+LGGKLG EV + E+ L+
Sbjct: 270 LGSGYKKPNQQTIVRNRAVTHFLSSMKFTSIRNLGGKLGSEVATAFGTENVSEVLSVPLE 329
Query: 280 QLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATR-QDVSHWIQE 338
++ + T +WLY RGID V R KS+ K F T TR Q +W++
Sbjct: 330 TFKAKLGDDTGTWLYKTIRGIDTTEVLTRTDIKSMLSAKSF---TPAITRYQQGENWLKV 386
Query: 339 LADEVCERLEDD 350
++ R+ ++
Sbjct: 387 FCADIVSRVNEE 398
>gi|389601156|ref|XP_001564778.2| putative DNA polymerase eta [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322504922|emb|CAM38849.2| putative DNA polymerase eta [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 757
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 125/455 (27%), Positives = 191/455 (41%), Gaps = 103/455 (22%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R IA +DMDCFY QVE +L PL + Q+ G +IAVNY AR +GV R R
Sbjct: 17 RCIAHVDMDCFYAQVEAVRLGLDCRVTPLVLAQW-----GSLIAVNYPARARGVKRFSRV 71
Query: 63 DEAKQHCPEIELCRVPSVR-GKA---------------DISKYRNAGREVIAVLSEFSNI 106
EA+ CPE+ + PS R G+A + YR+A R++ +L+E +
Sbjct: 72 SEAQALCPELIIALSPSYRMGEATYQYHPHPVPDSYKISLEPYRHASRQIFGILAEAPGV 131
Query: 107 -VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW-- 163
VE+A +DEAY+D+T+ + + AA + V P + R+A + W
Sbjct: 132 QVEKAGLDEAYVDVTEAARRELAEVRAAAAGASLDPLVDVMEPSTRLIEDRRAEMEAWLC 191
Query: 164 -----LGQVYSDTDTSL--------MENTEDF-------------QELAIAGVIVEEIRA 197
L V+ + +L +E + F L A +V +R
Sbjct: 192 ARGTSLAAVFDEPMRALVRGECGAGLEGSRAFCVGADDPAYAERCLLLCAASRVVHRLRQ 251
Query: 198 AVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSMLYANLSIKKVRHLGGK 256
+ ++ + CSAGIAHN+VLAK + HKP +Q+ +LP S L+ L + +R GGK
Sbjct: 252 RIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRGASALF-ELPLSGLRGFGGK 310
Query: 257 LGDEVVETLQCSTMLELEKFSLKQL----------------------------------- 281
LG V ++ C + E + L L
Sbjct: 311 LGAAV--SVVCGGVTECREAWLVPLAQLYKLDGTHDAGVGADAEEDGERRKGRPLARKRR 368
Query: 282 -----------QSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQ 330
Q T+ +++Y+ RG + V+ R +SKSI K F G+ + +
Sbjct: 369 RTALSSLERDHQGLVAHTTSEYVFYLLRGFGEDTVSNRPLSKSIIASKNF-GRITTSV-E 426
Query: 331 DVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSF 365
V W+ LA E+C R + L R + V
Sbjct: 427 VVRSWVTVLASELCSRYNEFTALYHLRGRSFNVKL 461
>gi|336370736|gb|EGN99076.1| hypothetical protein SERLA73DRAFT_168617 [Serpula lacrymans var.
lacrymans S7.3]
Length = 634
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 183/385 (47%), Gaps = 57/385 (14%)
Query: 4 RIIALIDMDCFYC---QVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R++AL D D FY QV L+P++ P+ V Q+ +IAVNY AR G++R
Sbjct: 48 RVVALCDSDAFYAACEQVRLGLDPNV---PMVVQQWEA-----LIAVNYPARKFGISRMD 99
Query: 61 RGDEAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVLSE-- 102
R +AK+ CPE+ V + + K + YR ++I + E
Sbjct: 100 RVKDAKKRCPELIAVHVATYKEGQKEPGYWDDVDSHTHKVSLDYYRRESMKIINMFKENL 159
Query: 103 FSNIVERASIDEAYIDLTDVVHER-------MKSIGHIAASQLSNTF---------VVGF 146
+E+ASIDEA+ID T V E+ + + H A + + + +GF
Sbjct: 160 PGGEIEKASIDEAFIDFTRPVREKILERYPYLAEVPHDAPNGIDSPLPPPPPISWNAIGF 219
Query: 147 -GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 205
P E A G G+ D D++ + L+IA ++++IR V +K +
Sbjct: 220 LVPVTPSESAGNEGEELLRGE---DDDSTTWHDVA----LSIAAELMDQIRKEVHTKLGY 272
Query: 206 HCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETL 265
SAGI+ NK LAKL KP QSIL +++ L +K+R LGGKLGD + +
Sbjct: 273 TTSAGISRNKFLAKLCASYKKPNSQSILRNTAIPNYLRPLPFQKIRFLGGKLGDALAKEY 332
Query: 266 QCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR-LVSKSIGCCKRFPGKT 324
ST+ +L SL+++Q F E + W+Y + RGID V + + KS+ K P
Sbjct: 333 DVSTVGDLLTISLEEMQRKFGENSI-WVYELLRGIDRSEVKEKSAMFKSMLASKNLP--K 389
Query: 325 CLATRQDVSHWIQELADEVCERLED 349
+ + HW++ LA E+ RL+D
Sbjct: 390 PITNPSEGHHWLRVLAAELALRLKD 414
>gi|76157725|gb|AAX28563.2| SJCHGC04877 protein [Schistosoma japonicum]
Length = 193
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 88/120 (73%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RI+ L+DMDCFY QVE + P GKP V QY+ WKGGG +A++YEAR G+ R M GD
Sbjct: 5 RIVMLLDMDCFYVQVEQREAPETKGKPCIVSQYSEWKGGGALAISYEARALGIKRGMFGD 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
E + H P++ + +VP RGKA+++KYR A EVI +SEF++ +ERASIDEAY+DLT +V
Sbjct: 65 EIRAHYPDVIIFKVPEKRGKAELTKYRVASSEVIQCISEFTSDIERASIDEAYVDLTAIV 124
>gi|403415591|emb|CCM02291.1| predicted protein [Fibroporia radiculosa]
Length = 1222
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/398 (30%), Positives = 184/398 (46%), Gaps = 72/398 (18%)
Query: 4 RIIALIDMDCFYC---QVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IAL D D FY QV L+PS+ PL V Q+++ +IAVNY AR G+TR
Sbjct: 618 RVIALCDSDAFYAACEQVRLGLDPSV---PLVVQQWDS-----LIAVNYPARTYGITRME 669
Query: 61 RGDEAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVLSEF- 103
+ EA++ CPE+ + V + + K + YR ++I + E
Sbjct: 670 KVKEARRKCPELTVVHVATFKEGEKEPGYWKNPDTLTHKVSLDYYRRESMKIITMFQEGL 729
Query: 104 -SNIVERASIDEAYIDLTDVVHER-MKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161
+ +E+ASIDEA+ID T V E ++ ++A V P+ D +
Sbjct: 730 PTGEIEKASIDEAFIDFTRPVREEILRRYPYLAE-------VPPDAPNGIDSPVPSPPPI 782
Query: 162 EWLGQ---VYSDTDTSLM-----------------ENTEDFQE-----------LAIAGV 190
W G V++D + + E++E +E L+IA
Sbjct: 783 IWSGLGTVVFADHEPQEIRDDAIRSQRSARSRTHDESSEGVKECDSSTTWHDVALSIAAE 842
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
++ IR + K + SAG+A NK LAKL KP QSIL +++ ++ +K+
Sbjct: 843 LMGRIRRDIHEKLGYTTSAGLARNKFLAKLTASYKKPNSQSILRNAAIPNYLRPIAFQKI 902
Query: 251 RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR-L 309
R LGGKLG + E ST+ +L +L+++Q E + W+Y I RGID V +
Sbjct: 903 RFLGGKLGKAIAEEFDASTVGDLLLINLEEMQRKLGENSI-WVYEILRGIDRSEVKEKSF 961
Query: 310 VSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
V+KS+ K P T+ HWI+ LA E+ RL
Sbjct: 962 VNKSMMASKNLPQPVTNETQG--YHWIRVLAAELALRL 997
>gi|156058306|ref|XP_001595076.1| hypothetical protein SS1G_03164 [Sclerotinia sclerotiorum 1980]
gi|154700952|gb|EDO00691.1| hypothetical protein SS1G_03164 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 611
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 177/366 (48%), Gaps = 49/366 (13%)
Query: 29 KPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR------- 81
KPLAV Q+ G+IA+NY AR G+ RH+ EAK+ CP++ V + R
Sbjct: 10 KPLAVQQWQ-----GLIAINYPARAFGLNRHINITEAKKLCPDLICQHVATWREGDEKWA 64
Query: 82 -----------GKADISKYRNAGREVIAVLSEFS----NIVERASIDEAYIDLTDVVHER 126
K + YR R ++A + + VE+AS+DE ++DL+ VH
Sbjct: 65 YHDDAFKNIAIHKVSLDPYRLESRRILACIKDCVPNDLQRVEKASVDEVFMDLSSQVH-- 122
Query: 127 MKSIGHIAASQLSNTFVVGFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTE- 180
+ L + GP D+ + V++W D DT E +
Sbjct: 123 ---------AILLERYPELQGPAPYDDLTEQLPLPPTTVLDWKADALVDLDTDETETDDP 173
Query: 181 DFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
D+ ++A I IV +RAA+ K ++ CSAGIA NK+L+KL G KP +Q+++ +V
Sbjct: 174 DWDDIAMLIGSEIVRTVRAAIREKLKYTCSAGIAQNKMLSKLGSGHKKPNQQTVIRNRAV 233
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
+ K+R+LGGK G+EVV+ + +L ++ L+ E+T +W++ + R
Sbjct: 234 QQFLSGFKFTKIRNLGGKTGEEVVKLFNTDMVNDLLLVPMEHLKQKLGEETGTWVHNVIR 293
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRR 357
G D VN+R KS+ K F + + T + + W++ ++ RL E+ + NKRR
Sbjct: 294 GNDTSDVNSRTQIKSMLSAKSF--RPSINTPEQANRWLRIFVADIHSRLVEEGVLENKRR 351
Query: 358 AQLLTV 363
+ + +
Sbjct: 352 PKTINL 357
Score = 42.7 bits (99), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 942 SAINIADPTKIICDKCSQPIDINE-LQEHQDYHFALELS------TTSEPPNSTSNISNS 994
SA+ T+ +C +C+Q +D E Q HQD+HFA +L TS P ++S
Sbjct: 528 SALKQPQITEFLCSRCNQALDCAEAFQSHQDWHFAKDLQDEDRLRRTSPAPATSSGNKRG 587
Query: 995 SSSSKILNKKSSKRGRPSKLNS 1016
+S K + + + GRP K S
Sbjct: 588 VASKK---RGNGRGGRPEKGQS 606
>gi|392564568|gb|EIW57746.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 699
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 184/407 (45%), Gaps = 81/407 (19%)
Query: 4 RIIALIDMDCFYC---QVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R++AL D D FY QV L+P+L PL V Q+++ +IAVNY AR G++R
Sbjct: 54 RVVALCDSDAFYAACEQVRLALDPAL---PLVVQQWDS-----LIAVNYPARTYGISRMD 105
Query: 61 RGDEAKQHCPEIELCRVPSVR-GKAD---------------ISKYRNAGREVIAVLSEF- 103
+ +A++ CP++ + V + R G+A+ + YR ++I + E
Sbjct: 106 KIRDARKRCPDLVVVHVATYREGEAEPGYWENPDTRTHKVSLDHYRRESMKIIQLFKEGL 165
Query: 104 -SNIVERASIDEAYIDLTDVVHERM-KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161
VE+ASIDEA+ID T V E + K ++A V P+ D +
Sbjct: 166 PGGEVEKASIDEAFIDFTRPVREELLKRYPYLAV-------VPPDAPNGVDSPLPPPPPI 218
Query: 162 EWLG-----------QVYSDTDTSLMENTEDFQE-------------------------- 184
W G + + D E+ E E
Sbjct: 219 SWDGLATIVPVNPPKEPPKEQDLPAGESVESTAEDQKSNISEPTDDDEVVEEDDSLTTWH 278
Query: 185 ---LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
L+IA ++ IR + +K + SAGIA NK LAKL KP Q++L +++
Sbjct: 279 DVALSIAAELMLRIREDIRTKLGYTTSAGIARNKFLAKLTASYKKPMNQTVLRNAAIPNY 338
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
++ +K+R LGGKLG + E ST+ +L SL+++Q F E + W+Y I RGID
Sbjct: 339 LKPMAFQKIRFLGGKLGKALAEEYDVSTVGDLLTISLEEMQRKFGEDSI-WVYEILRGID 397
Query: 302 HEPVNAR-LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
V + V+KS+ K P AT+ HWI+ LA E+ RL
Sbjct: 398 RSEVKEKSAVNKSMLASKNLPQPITKATQG--YHWIRVLAAELALRL 442
>gi|344269856|ref|XP_003406763.1| PREDICTED: DNA polymerase iota [Loxodonta africana]
Length = 713
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 175/348 (50%), Gaps = 43/348 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE +P L GKPL V Q ++ NYEAR GV + M
Sbjct: 31 SSRVIVHVDLDCFYAQVEMISHPELKGKPLGVQQKYF-----VVTCNYEARKLGVKKLMS 85
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V ++ EFS +VER DE ++D+T+
Sbjct: 86 VRDAKEKCPQLVL-----VNGE-DLTRYRETSYKVTELMEEFSPLVERLGFDENFVDITE 139
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
++ +R++ + S ++ + G VY+D +L + +
Sbjct: 140 LIEKRLQQLQSEEHSSVTVS-----------------------GHVYNDQSINLHDISHI 176
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I EIR A+ +K AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 177 --RLLVGSQIAAEIREAIYNKLGLTGCAGVASNKLLAKLVSGIFKPNQQTVLLPESCQDL 234
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L S++ +L+ FS K L+ A + ++ G
Sbjct: 235 IHSLNHIKEIPGIGYKTSKR-LEALGISSVRDLQTFSSKILEKELGISVAQRIQKLSFGE 293
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLA---TRQDVSHWIQELADEVCE 345
D PV +S F K C + +Q ++ + L + VC+
Sbjct: 294 DTSPVTPSGPPQSFSEEDSF--KKCSSEDEAKQKIAELLDSLFNRVCQ 339
>gi|303319933|ref|XP_003069966.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240109652|gb|EER27821.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 665
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 117/426 (27%), Positives = 189/426 (44%), Gaps = 88/426 (20%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R++A ID+D FY Q E +LN + +PLAV Q+ + +IAVNY AR ++R +
Sbjct: 54 RVVAHIDLDAFYAQCEMVRLN-TPRTQPLAVQQWES-----LIAVNYAARSFNISRMITA 107
Query: 63 DEAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVLSE- 102
EAK CP++ V + R K + YR R+++ + +
Sbjct: 108 KEAKARCPQLMTVHVATFREGEGGKWAYREDGDHNVATDKVSLDPYRAESRKILGTIKDG 167
Query: 103 ------------------------------FSNIV--ERASIDEAYIDLTDVVH----ER 126
++N+V E+A IDE +IDL+ +V ER
Sbjct: 168 LVAWAEKIDPCGLGERRTESGGSVKEKEKDWTNMVRIEKAGIDEVFIDLSALVWATLLER 227
Query: 127 MKSIGHIAAS-QLSN------TFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ + Q+S T + +G ++ D + E D D
Sbjct: 228 YPMLQEMEVKRQMSERLPRPPTTALDWGKEDELVDLDEGETEE------DDPDW------ 275
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
D + + IV +R + + + CSAGIA NK++AKL +KP KQ+I+ ++
Sbjct: 276 -DDMVMLVGADIVRSVRLMIRERLGYTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAIQ 334
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
K+R LGGKLG ++ T + + EL + L+Q ++ ++ T WLY + RG
Sbjct: 335 QFLGGFKFTKIRMLGGKLGKQIASTFETEQVDELLRVPLEQFKAKLDDDTGMWLYELIRG 394
Query: 300 IDHEPVNARLVSKSIGCCKRF-PGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRR 357
D VN R KS+ K F PG L + W++ A E+ RL E+ + +KRR
Sbjct: 395 NDWSEVNPRTQIKSMISTKSFRPGINSL---EQAEKWLRIFAAEIYGRLVEEGVLEHKRR 451
Query: 358 AQLLTV 363
++LT+
Sbjct: 452 PKVLTI 457
>gi|71653214|ref|XP_815248.1| DNA polymerase eta [Trypanosoma cruzi strain CL Brener]
gi|70880290|gb|EAN93397.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 119/435 (27%), Positives = 204/435 (46%), Gaps = 45/435 (10%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R I +DMDCFY QVE +L +P + Q+ G +IAVNY AR G+ R
Sbjct: 2 RCIVHLDMDCFYAQVEAVRLGIDCRTEPYILSQW-----GNLIAVNYPARKCGIARFDTV 56
Query: 63 DEAKQHCPEIELCRVPSV--------------RG--KADISKYRNAGREVIAVLSEFSNI 106
++A++ CP +++ V + +G K + YR A R++ +L F +
Sbjct: 57 EKAREKCPHVKVSHVATYAVGDTEYKYHENARKGTHKVSLEPYREASRKIFNILRSFEGV 116
Query: 107 -VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL- 164
VE+ S+DEAY+D+T + SI + ++Q S P+ N R+A + WL
Sbjct: 117 EVEKGSVDEAYLDVTLAAQRELASI-RLPSAQCSYHLEDVMHPETNVIPDRRAEIDAWLF 175
Query: 165 --GQVYSDT-DTSL--MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
G+ +++ DT+L E L A +V ++R + + + CSAGIAHNK+LAK
Sbjct: 176 EKGKEFNEIFDTALHPQATVEHQLLLGAASRVVWKLREKIYQELCYDCSAGIAHNKILAK 235
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEV------VETLQCSTMLEL 273
+ HKP +Q++L V+ + + + GGK G+ V E + + ++ L
Sbjct: 236 SISSRHKPNQQTLLLPDRVASAVWDAPYQSIHGFGGKFGESVCRACGNAELFRDAWLVPL 295
Query: 274 EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVS 333
EK LQS ++ +Y R E + + V+K++ K F T ++ + +
Sbjct: 296 EK-----LQSVLGVDDGTYAFYRLRCHGKEKIQEQSVTKTLMASKSFSPPT--SSSEGLR 348
Query: 334 HWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCS-RSIALASY-KLQDIV 391
WI L+ E+C R ++ N + Q L V + ++ S ++AL + ++
Sbjct: 349 KWITVLSSELCARYKEFCETNNAKGQRLNVKLGNQGLRQLGGVSNNTLALPELVTTETLI 408
Query: 392 EVSMQVINKTNSAPP 406
+MQ++ T P
Sbjct: 409 AAAMQIVLATFVRHP 423
>gi|409048993|gb|EKM58471.1| hypothetical protein PHACADRAFT_140428 [Phanerochaete carnosa
HHB-10118-sp]
Length = 629
Score = 146 bits (368), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 120/396 (30%), Positives = 183/396 (46%), Gaps = 65/396 (16%)
Query: 4 RIIALIDMDCFYC---QVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IAL D D FY Q+ ++P KPL V Q+ +IAVNY AR G++R
Sbjct: 47 RVIALCDSDAFYAACEQLRLTIDPE---KPLVVQQWQ-----ALIAVNYPARKYGISRMD 98
Query: 61 RGDEAKQHCPEIELCRV---------------PSVRG-KADISKYRNAGREVIAVLSEFS 104
+AK+ CP +E+ V P R K + YR ++ + E
Sbjct: 99 NIKDAKKRCPHLEVVHVATYKEGEAEPGYWENPDTRTHKVSLDYYRKESWKIYHMFKEGL 158
Query: 105 NI--VERASIDEAYIDLTDVVHERMKS-IGHIAASQLSNTF------------------- 142
I VE+ASIDEA+ID T V E + S ++A F
Sbjct: 159 PIGEVEKASIDEAFIDFTRPVREEILSRYPYLAEVPPDAPFGKDTPLPPPPPISWDGLGT 218
Query: 143 VVGFGP------DNNDEDARKAGVMEWLGQ--VYSDTDTSLMENTEDFQELAIAGVIVEE 194
V+ P D NDE+ + + E + V+ D ++ + L+IA ++ +
Sbjct: 219 VIPVNPPREEKKDTNDEEGNEDAIHEDADEEGVHEDDASATWHDVA----LSIAAELMGK 274
Query: 195 IRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLG 254
IR V +K + SAGI+ NK LAKL KP QSIL +++ + +K+R LG
Sbjct: 275 IRHDVYTKLGYSTSAGISRNKFLAKLTASYKKPNNQSILRNAAIPNYLRPMPFQKIRFLG 334
Query: 255 GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR-LVSKS 313
GKLG + E ST+ +L +L ++Q F E++ W++ I RG+D V + ++KS
Sbjct: 335 GKLGKALAEEYDVSTVSDLLTVNLDEIQRKFGEESI-WVWEILRGVDRTEVKEKPPITKS 393
Query: 314 IGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED 349
+ K P A++ HWI+ LA E+ RL +
Sbjct: 394 MLASKNLPQPIVTASQG--HHWIRVLAAELALRLRE 427
>gi|320034290|gb|EFW16235.1| sister chromatid cohesion protein [Coccidioides posadasii str.
Silveira]
Length = 665
Score = 145 bits (367), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 117/426 (27%), Positives = 189/426 (44%), Gaps = 88/426 (20%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R++A ID+D FY Q E +LN + +PLAV Q+ + +IAVNY AR ++R +
Sbjct: 54 RVVAHIDLDAFYAQCEMVRLN-TPRTQPLAVQQWES-----LIAVNYAARSFNISRMITA 107
Query: 63 DEAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVLSE- 102
EAK CP++ V + R K + YR R+++ + +
Sbjct: 108 KEAKARCPQLMTVHVATFREGEGGKWAYREDGDHNVATDKVSLDPYRAESRKILGTIKDG 167
Query: 103 ------------------------------FSNIV--ERASIDEAYIDLTDVVH----ER 126
++N+V E+A IDE +IDL+ +V ER
Sbjct: 168 LVAWAEKVDPCGLGERRTESGGSVKEKEKDWTNMVRIEKAGIDEVFIDLSALVWATLLER 227
Query: 127 MKSIGHIAAS-QLSN------TFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ + Q+S T + +G ++ D + E D D
Sbjct: 228 YPMLQEMEVKRQMSERLPRPPTTALDWGKEDELVDLDEGETEE------DDPDW------ 275
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
D + + IV +R + + + CSAGIA NK++AKL +KP KQ+I+ ++
Sbjct: 276 -DDMVMLVGADIVRSVRLMIRERLGYTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAIQ 334
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
K+R LGGKLG ++ T + + EL + L+Q ++ ++ T WLY + RG
Sbjct: 335 QFLGGFKFTKIRMLGGKLGKQIASTFETEQVDELLRVPLEQFKAKLDDDTGMWLYELIRG 394
Query: 300 IDHEPVNARLVSKSIGCCKRF-PGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRR 357
D VN R KS+ K F PG L + W++ A E+ RL E+ + +KRR
Sbjct: 395 NDWSEVNPRTQIKSMISTKSFRPGINSL---EQAEKWLRIFAAEIYGRLVEEGVLEHKRR 451
Query: 358 AQLLTV 363
++LT+
Sbjct: 452 PKVLTI 457
>gi|354499580|ref|XP_003511886.1| PREDICTED: DNA polymerase iota [Cricetulus griseus]
Length = 708
Score = 145 bits (367), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 192/392 (48%), Gaps = 49/392 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 21 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 75
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+S+YR +V +L EFS +VER DE ++DLT+
Sbjct: 76 VRDAKEKCPQLVL-----VNGE-DLSRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 129
Query: 122 VVHERMKSI--GHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+V +R++ + I + +S G +Y++ +L T
Sbjct: 130 MVEKRLQQLPRDEILSVTVS-------------------------GHIYNNQSVNLHNIT 164
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSV 238
L + I EIR A+ + Q AG+A NK+LAKLV G+ KP +Q++ LP+S
Sbjct: 165 H--VRLVVGSQIAAEIREAMYHQLQLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQ 222
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
++++ IK++ +G K +E L +++ +L+ FS+K L+ A + ++
Sbjct: 223 DLIHSLNHIKEMPGIGYKTAKR-LEVLGINSVRDLQTFSVKTLEKELGISVAQRIQKLSF 281
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
G D+ PV +S F K C ++ + I+EL + +R+ D R+
Sbjct: 282 GEDNSPVTPSGPPQSFSEEDTF--KKC-SSEAEAKTKIEELLSSLLKRVCHD----GRKP 334
Query: 359 QLLTVSFTQETDGKVNSCSRSIALASYKLQDI 390
+ + + ++ N SR + S+ +Q +
Sbjct: 335 HTIRLVIRRYSEKHCNRESRQCPIPSHVIQKL 366
>gi|19113570|ref|NP_596778.1| sister chromatid cohesion protein/DNA polymerase eta Eso1
[Schizosaccharomyces pombe 972h-]
gi|12230051|sp|O42917.1|ESO1_SCHPO RecName: Full=N-acetyltransferase eso1; AltName: Full=ECO1 homolog;
AltName: Full=Sister chromatid cohesion protein eso1
gi|2842510|emb|CAA16862.1| sister chromatid cohesion protein/DNA polymerase eta Eso1
[Schizosaccharomyces pombe]
gi|7678718|dbj|BAA95122.1| Eso1 [Schizosaccharomyces pombe]
Length = 872
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 186/383 (48%), Gaps = 39/383 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++A ID D FY QVE H PLAV Q+ G+IAVNY AR ++RH
Sbjct: 27 RVVAHIDQDAFYAQVESVRLGLDHSVPLAVQQWQ-----GLIAVNYAARAANISRHETVT 81
Query: 64 EAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEFSNIV 107
EAK+ CPE+ V + + K + YR+ +++ ++ + + +V
Sbjct: 82 EAKKKCPELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPYRHESVKILNIIKKHAPVV 141
Query: 108 ERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQV 167
++ASIDE +I+LT V + L + ++++ +A V+ W +
Sbjct: 142 KKASIDECFIELTSDVKRIV----------LEEYPYLKIPSEDSNVALPQAPVLLWPAEF 191
Query: 168 YSDTDTSLMENT-EDFQE------LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKL 220
+ +++ T ED++ L A IV+EIR + + ++ CSAG++ N +L+KL
Sbjct: 192 GMVIEEEVVDRTKEDYERDWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKL 251
Query: 221 VCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQ 280
V +KP KQ+IL ++++ +L I +R LGGK G+E++ L ++ ++ S+
Sbjct: 252 VSSRNKPNKQTILTKNAIQDYLVSLKITDIRMLGGKFGEEIINLLGTDSIKDVWNMSMDF 311
Query: 281 LQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELA 340
L + ++ + GID+ + ++ KS+ K F + + + +D +W Q A
Sbjct: 312 LIDKLGQTNGPLVWNLCHGIDNTEITTQVQIKSMLSAKNFSQQK-VKSEEDAINWFQVFA 370
Query: 341 DEVCERLEDDLTLNKRRAQLLTV 363
++ R + + + + LTV
Sbjct: 371 SDLRSRFLELEGMRRPKTICLTV 393
>gi|239612109|gb|EEQ89096.1| sister chromatid cohesion protein [Ajellomyces dermatitidis ER-3]
Length = 756
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 128/476 (26%), Positives = 210/476 (44%), Gaps = 97/476 (20%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RIIA ID+D FY Q E +LN + +PLAV Q+ + +IAVNY AR +TR +
Sbjct: 84 RIIAHIDLDAFYAQCEMVRLN-TPRTQPLAVQQWES-----LIAVNYAARAFNITRMLTA 137
Query: 63 DEAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVI----AV 99
EA++ CP++ V + R K + YR R ++ A
Sbjct: 138 AEARKRCPQLVTQHVATFREGEGAQWKYRDDAAECVATDKVSLEPYRVESRRILEGIRAA 197
Query: 100 LSEFSN---------------------------------IVERASIDEAYIDLTDVVHER 126
L+ ++ VE+A IDE ++DL+ +V+E
Sbjct: 198 LAAWAEGVMRDVGGGGGGGEGRGGGGTKNELQLQLQQLVRVEKAGIDEVFVDLSALVYET 257
Query: 127 MKSIGHIAASQLSNTFVVGFGPDNNDEDAR----KAGVMEWLGQ-VYSDTDTSLMENTE- 180
+ L ++ G D R V+EW + + D D E +
Sbjct: 258 L----------LDRHPMLREGEVGRDMSERLPRPPTTVLEWGKEDMLVDLDAGQAEEDDP 307
Query: 181 DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
D+ + + I IV +RA + + ++ CSAGIA NK++AKL +KP KQ+I+ +V
Sbjct: 308 DWDDVCMLIGADIVRSVRATIWERLKYTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAV 367
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
++R LGGKLG +V + L ++QL+ + T +WLY + R
Sbjct: 368 QQFLGGFKFTQIRMLGGKLGKQVAAIFGTDEVGGLLHVPVEQLRLKLGDDTGTWLYELLR 427
Query: 299 GIDHEPVNARLVSKSIGCCKRF-PGKTCLATRQDVSHWIQELADEVCER-LEDDLTLNKR 356
G ++ V+ R KS+ K F PG + + W++ ++ R LE+ + NKR
Sbjct: 428 GYEYSEVSVRTQIKSMLSTKSFRPG---IQSSTQAEKWLRIFVADIYGRLLEEGVLENKR 484
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYK------LQDIVEVSM-QVINKTNSAP 405
R +++T+ T G+ SR I + + + L D+ + + QV+N+ N P
Sbjct: 485 RPKVITIH--HRTAGQTR--SRQIPIPTGRPITDTFLFDLAKTLLAQVVNEGNIWP 536
>gi|340056782|emb|CCC51120.1| putative DNA polymerase eta [Trypanosoma vivax Y486]
Length = 513
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 129/457 (28%), Positives = 203/457 (44%), Gaps = 64/457 (14%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R IA IDMDCFY QVE +L P VVQ+ + +++V+Y AR G++R
Sbjct: 2 RCIAHIDMDCFYVQVEAMRLGIDYRTVPFIVVQWQS-----VLSVSYPARKFGISRLTPL 56
Query: 63 DEAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEFSNI 106
EA + CP+I + R + K + YR A RE+ VL F +
Sbjct: 57 SEAIKMCPDIRISRTATYVAEDSQYRYHENPGKWTHKISLEPYREASREIFRVLGSFEGV 116
Query: 107 -VERASIDEAYIDLTDVV-HERMKSIGHIAASQLS-------NTFVVGFGPDNNDEDARK 157
VERASIDEAY+D+T+ HE + + L +T V+ PD DE
Sbjct: 117 CVERASIDEAYLDVTEAAKHELEEMAAQRRGASLRWEDVVEPSTIVI---PDRQDE---- 169
Query: 158 AGVMEWL---GQVYSDT-DTSLMENT--EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGI 211
+ W G+ +S+ D SL E L+ A +V+ IR + ++ CSAGI
Sbjct: 170 --IDAWFEERGRAFSEVFDVSLHPGATEEGKVLLSAASRVVQRIRQKLYDDLRYECSAGI 227
Query: 212 AHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQ----C 267
AHNK+LAK + L+KP +Q++L V+ + + +R GG+LG+ V + C
Sbjct: 228 AHNKLLAKNISSLYKPNQQTLLFPDRVASAMWDTKYQTIRGFGGRLGETVCDLCDGEELC 287
Query: 268 STMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLA 327
L K L+ + + +++Y R D + KSI K FP
Sbjct: 288 RDAWLLSKQKLR--AALYRTFDPNYVYLRLRCYDDDEFAVGTAHKSITTTKLFPPHA--I 343
Query: 328 TRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKL 387
+ ++ W+ +++E+C R +K + Q L V D K +A ++
Sbjct: 344 SNGEIRRWVSAVSEELCRRYTLLCDEHKVKGQKLNVRL----DKKGRDHFEVLACKTFPR 399
Query: 388 QDIVE------VSMQVINKTNSAPPISDLTPPLLFLG 418
++V V+MQ+I T P + L+ + +G
Sbjct: 400 PELVNPSSVATVAMQLITATMLVKPGTVLSALTMTIG 436
>gi|261202176|ref|XP_002628302.1| sister chromatid cohesion protein [Ajellomyces dermatitidis
SLH14081]
gi|239590399|gb|EEQ72980.1| sister chromatid cohesion protein [Ajellomyces dermatitidis
SLH14081]
Length = 757
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 210/477 (44%), Gaps = 98/477 (20%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RIIA ID+D FY Q E +LN + +PLAV Q+ + +IAVNY AR +TR +
Sbjct: 84 RIIAHIDLDAFYAQCEMVRLN-TPRTQPLAVQQWES-----LIAVNYAARAFNITRMLTA 137
Query: 63 DEAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVI----AV 99
EA++ CP++ V + R K + YR R ++ A
Sbjct: 138 AEARKRCPQLVTQHVATFREGEGAQWKYRDDAAECVATDKVSLEPYRVESRRILEGIRAA 197
Query: 100 LSEFSN----------------------------------IVERASIDEAYIDLTDVVHE 125
L+ ++ VE+A IDE ++DL+ +V+E
Sbjct: 198 LAAWAEGVMRDVGGGGGGGGEGRGGGGTKNELQLQLQQLVRVEKAGIDEVFVDLSALVYE 257
Query: 126 RMKSIGHIAASQLSNTFVVGFGPDNNDEDAR----KAGVMEWLGQ-VYSDTDTSLMENTE 180
+ L ++ G D R V+EW + + D D E +
Sbjct: 258 TL----------LDRHPMLREGEVGRDMSERLPRPPTTVLEWGKEDMLVDLDAGQAEEDD 307
Query: 181 -DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
D+ + + I IV +RA + + ++ CSAGIA NK++AKL +KP KQ+I+ +
Sbjct: 308 PDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIARNKMMAKLGSACNKPNKQTIVRNRA 367
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V ++R LGGKLG +V + L ++QL+ + T +WLY +
Sbjct: 368 VQQFLGGFKFTQIRMLGGKLGKQVAAIFGTDEVGGLLHVPVEQLRLKLGDDTGTWLYELL 427
Query: 298 RGIDHEPVNARLVSKSIGCCKRF-PGKTCLATRQDVSHWIQELADEVCER-LEDDLTLNK 355
RG ++ V+ R KS+ K F PG + + W++ ++ R LE+ + NK
Sbjct: 428 RGYEYSEVSVRTQIKSMLSTKSFRPG---IQSSTQAEKWLRIFVADIYGRLLEEGVLENK 484
Query: 356 RRAQLLTVSFTQETDGKVNSCSRSIALASYK------LQDIVEVSM-QVINKTNSAP 405
RR +++T+ T G+ SR I + + + L D+ + + QV+N+ N P
Sbjct: 485 RRPKVITIH--HRTAGQTR--SRQIPIPTGRPITDTFLFDLAKTLLAQVVNEGNIWP 537
>gi|281351226|gb|EFB26810.1| hypothetical protein PANDA_002636 [Ailuropoda melanoleuca]
Length = 701
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 173/348 (49%), Gaps = 43/348 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L GKPL V Q ++ NYEAR GV + M
Sbjct: 12 SSRVIVHVDLDCFYAQVEMISNPELKGKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 66
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 67 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 120
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + S L+ + G VY++ +L +
Sbjct: 121 MVEKRLQQLQSDELSALTVS-----------------------GHVYNNQYINLHDIVH- 156
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP++S +
Sbjct: 157 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPETSQVL 215
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ + ++++ +G K +E L S++ +L+ FS K L+ A + ++ G
Sbjct: 216 IQSLSHVREMPGIGYKTAKR-LEALGISSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 274
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTC---LATRQDVSHWIQELADEVCE 345
D+ PV +S F K C + + V + L + VC+
Sbjct: 275 DNSPVTPSGPPQSFSEEDSF--KKCSSEVEAKNKVEELLASLLNRVCQ 320
>gi|194214689|ref|XP_001499840.2| PREDICTED: DNA polymerase iota-like [Equus caballus]
Length = 864
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 158/303 (52%), Gaps = 38/303 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I +D+DCFY QVE NP L GKPL V Q + ++ NYEAR GV + M
Sbjct: 157 RVIVHVDLDCFYAQVEMISNPELKGKPLGVQQKSL-----MVTCNYEARKLGVKKCMNIR 211
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT++V
Sbjct: 212 DAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMV 265
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+R++ + NDE + G VY++ +L +
Sbjct: 266 EKRLQQL-------------------QNDELL----ALTVSGHVYNNQFVNLHDVLH--I 300
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSMLY 242
L + I E+R AV ++ AG+A NK+LAKLV G+ KP +Q++ LP+SS +++
Sbjct: 301 RLLVGSQIAAEMREAVYNRLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDLIH 360
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+ IK++ +G K +E L S++ +L+ S K L+ A + ++ G D+
Sbjct: 361 SLNHIKEIPGIGYKTAKR-LEALGISSVRDLQTCSSKILEKELGISVAQRIQKLSFGEDN 419
Query: 303 EPV 305
PV
Sbjct: 420 SPV 422
>gi|359318428|ref|XP_003432548.2| PREDICTED: DNA polymerase iota [Canis lupus familiaris]
Length = 763
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 176/349 (50%), Gaps = 41/349 (11%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R+I +D+DCFY QVE NP L GKPL V Q ++ NYEAR GV + M
Sbjct: 74 ARVIVHVDLDCFYAQVEMISNPELKGKPLGVQQKYL-----VVTCNYEARKLGVKKLMNV 128
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT++
Sbjct: 129 RDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEM 182
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V +R++ + S L+ + G VY++ +L +
Sbjct: 183 VEKRLQQLQSDELSALTVS-----------------------GHVYNNQYINLHDILH-- 217
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSML 241
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+SS ++
Sbjct: 218 IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQVLI 277
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
+ +K++ +G K +E L S++ +L+ FS K L+ A + ++ G D
Sbjct: 278 QSLNHVKEMPGIGYKTAKR-LEALGISSVYDLQTFSSKILEKELGISVAQRIQKLSFGED 336
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
+ PV +S F K C ++ +V + I+EL + R+ D
Sbjct: 337 NSPVTPSGPPQSFSEEDSF--KKC-SSEVEVKNKIEELLASLLNRVCQD 382
>gi|426253842|ref|XP_004020600.1| PREDICTED: DNA polymerase iota isoform 2 [Ovis aries]
Length = 734
Score = 144 bits (363), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 170/345 (49%), Gaps = 38/345 (11%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+ R+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 47 SCRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMS 101
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 102 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 155
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G +N + R DT +
Sbjct: 156 MVEKRLE---QLQSDELSALTVSGHVYNNQSVNPR---------------DTLHI----- 192
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ + AG+A NK+LAKLV G+ KP +Q++ LP+SS +
Sbjct: 193 --RLLVGSHIAAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDL 250
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L S++ +L+ FS K L+ A + ++ G
Sbjct: 251 IHSLNHIKEIPGIGYKTAKR-LEALGISSVRDLQTFSSKILEKELGISVAQRIQKLSFGE 309
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCE 345
D PV +S F + + + + + L + VC+
Sbjct: 310 DDSPVTPSGPPQSFSEEDSFRCSSEVEAKTKIEELLASLLNRVCQ 354
>gi|426253840|ref|XP_004020599.1| PREDICTED: DNA polymerase iota isoform 1 [Ovis aries]
Length = 750
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 170/345 (49%), Gaps = 38/345 (11%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+ R+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 63 SCRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMS 117
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 118 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 171
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G +N + R DT +
Sbjct: 172 MVEKRLE---QLQSDELSALTVSGHVYNNQSVNPR---------------DTLHI----- 208
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ + AG+A NK+LAKLV G+ KP +Q++ LP+SS +
Sbjct: 209 --RLLVGSHIAAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDL 266
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L S++ +L+ FS K L+ A + ++ G
Sbjct: 267 IHSLNHIKEIPGIGYKTAKR-LEALGISSVRDLQTFSSKILEKELGISVAQRIQKLSFGE 325
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCE 345
D PV +S F + + + + + L + VC+
Sbjct: 326 DDSPVTPSGPPQSFSEEDSFRCSSEVEAKTKIEELLASLLNRVCQ 370
>gi|343960024|dbj|BAK63866.1| DNA polymerase iota [Pan troglodytes]
Length = 715
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 162/305 (53%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V+ G VY++ +L++
Sbjct: 135 MVGKRLQ---QLQSDELS--------------------VVTVSGHVYNNQSINLLDVLH- 170
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 171 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 288
Query: 301 DHEPV 305
D+ PV
Sbjct: 289 DNSPV 293
>gi|301757741|ref|XP_002914721.1| PREDICTED: DNA polymerase iota-like [Ailuropoda melanoleuca]
Length = 770
Score = 144 bits (362), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 159/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L GKPL V Q ++ NYEAR GV + M
Sbjct: 81 SSRVIVHVDLDCFYAQVEMISNPELKGKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 135
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 136 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 189
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + S L+ + G VY++ +L +
Sbjct: 190 MVEKRLQQLQSDELSALTVS-----------------------GHVYNNQYINLHDIVH- 225
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP++S +
Sbjct: 226 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPETSQVL 284
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ + ++++ +G K +E L S++ +L+ FS K L+ A + ++ G
Sbjct: 285 IQSLSHVREMPGIGYKTAKR-LEALGISSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 343
Query: 301 DHEPV 305
D+ PV
Sbjct: 344 DNSPV 348
>gi|426386012|ref|XP_004059489.1| PREDICTED: DNA polymerase iota [Gorilla gorilla gorilla]
Length = 739
Score = 144 bits (362), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 50 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 104
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 105 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 158
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L++
Sbjct: 159 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLH- 194
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 195 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 253
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 254 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 312
Query: 301 DHEPV 305
D+ PV
Sbjct: 313 DNSPV 317
>gi|5739208|gb|AAD50381.1|AF140501_1 DNA polymerase iota [Homo sapiens]
gi|20160209|gb|AAM11872.1| polymerase (DNA directed) iota [Homo sapiens]
Length = 715
Score = 144 bits (362), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L++
Sbjct: 135 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLH- 170
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 171 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 288
Query: 301 DHEPV 305
D+ PV
Sbjct: 289 DNSPV 293
>gi|12052864|emb|CAB66605.1| hypothetical protein [Homo sapiens]
gi|117644780|emb|CAL37856.1| hypothetical protein [synthetic construct]
gi|208965366|dbj|BAG72697.1| polymerase (DNA directed) iota [synthetic construct]
Length = 715
Score = 144 bits (362), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L++
Sbjct: 135 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLH- 170
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 171 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 288
Query: 301 DHEPV 305
D+ PV
Sbjct: 289 DNSPV 293
>gi|7533183|gb|AAF63383.1|AF245438_1 DNA polymerase iota [Homo sapiens]
Length = 715
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L++
Sbjct: 135 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLH- 170
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 171 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 288
Query: 301 DHEPV 305
D+ PV
Sbjct: 289 DNSPV 293
>gi|114673193|ref|XP_001156755.1| PREDICTED: DNA polymerase iota isoform 3 [Pan troglodytes]
Length = 739
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 162/305 (53%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 50 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 104
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 105 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 158
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V+ G VY++ +L++
Sbjct: 159 MVGKRLQ---QLQSDELS--------------------VVTVSGHVYNNQSINLLDVLH- 194
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 195 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 253
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 254 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 312
Query: 301 DHEPV 305
D+ PV
Sbjct: 313 DNSPV 317
>gi|21619716|gb|AAH32662.1| Polymerase (DNA directed) iota [Homo sapiens]
gi|123979980|gb|ABM81819.1| polymerase (DNA directed) iota [synthetic construct]
gi|124000603|gb|ABM87810.1| polymerase (DNA directed) iota [synthetic construct]
Length = 715
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L++
Sbjct: 135 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLH- 170
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 171 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 288
Query: 301 DHEPV 305
D+ PV
Sbjct: 289 DNSPV 293
>gi|397513971|ref|XP_003827278.1| PREDICTED: DNA polymerase iota [Pan paniscus]
Length = 739
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 162/305 (53%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 50 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 104
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 105 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 158
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V+ G VY++ +L++
Sbjct: 159 MVGKRLQ---QLQSDELS--------------------VVTVSGHVYNNQSINLLDVLH- 194
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 195 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 253
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 254 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 312
Query: 301 DHEPV 305
D+ PV
Sbjct: 313 DNSPV 317
>gi|154350220|ref|NP_009126.2| DNA polymerase iota [Homo sapiens]
gi|327478565|sp|Q9UNA4.3|POLI_HUMAN RecName: Full=DNA polymerase iota; AltName: Full=Eta2; AltName:
Full=RAD30 homolog B
Length = 740
Score = 143 bits (361), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 51 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 105
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 106 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 159
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L++
Sbjct: 160 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLH- 195
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 196 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 254
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 255 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 313
Query: 301 DHEPV 305
D+ PV
Sbjct: 314 DNSPV 318
>gi|119583404|gb|EAW63000.1| polymerase (DNA directed) iota, isoform CRA_a [Homo sapiens]
Length = 739
Score = 143 bits (361), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 50 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 104
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 105 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 158
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L++
Sbjct: 159 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLH- 194
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 195 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 253
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 254 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 312
Query: 301 DHEPV 305
D+ PV
Sbjct: 313 DNSPV 317
>gi|367041902|ref|XP_003651331.1| hypothetical protein THITE_2111461 [Thielavia terrestris NRRL 8126]
gi|346998593|gb|AEO64995.1| hypothetical protein THITE_2111461 [Thielavia terrestris NRRL 8126]
Length = 642
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 173/352 (49%), Gaps = 44/352 (12%)
Query: 43 GIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR------------------GKA 84
G++AVNY AR G+ R EAK+ CP++ V + R K
Sbjct: 52 GLVAVNYPARAYGIGRMCTVTEAKKLCPDLLHPHVATWREGDDKWAYRPDAAENIATDKV 111
Query: 85 DISKYRNAGREVIAVLSEF--SNI--VERASIDEAYIDLTDVVHE-RMKSIGHIAASQLS 139
+ YR R ++A++ E S++ VE+A IDE ++DL+ VH ++ ++A
Sbjct: 112 SLDPYRLESRRILAIIKEHLPSHLQKVEKAGIDEVFLDLSAHVHAVLLERFPELSAPP-- 169
Query: 140 NTFVVGFGPDNNDED---ARKAGVMEWLGQVYSDTDTSLME-NTEDFQELA--IAGVIVE 193
PD N + ++W D D E + D+ ++A +A IV
Sbjct: 170 --------PDGNPSELLPVPPVSALDWQADALVDLDDESAEFDDPDWDDVAFLVASEIVR 221
Query: 194 EIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHL 253
IRAA+ K ++ C+AGIA NK+L+KL KP +Q+++ +V + K R+L
Sbjct: 222 NIRAAIRDKLRYTCAAGIARNKLLSKLGSAHRKPNQQTVIRNRAVRKFLSGFKFTKFRNL 281
Query: 254 GGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKS 313
GGKLG+ V + ++ EL SL+QL+ ++T +W+Y RGID VN+R KS
Sbjct: 282 GGKLGEHVSQVFNTESVQELLSVSLEQLKLRLGDETGTWVYNTLRGIDTSEVNSRTQIKS 341
Query: 314 IGCCKRF-PGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTV 363
+ K F PG + T + + W++ A ++ RL E+ + +KRR + + +
Sbjct: 342 MLSAKSFRPG---INTVEQATRWLKIFAADIFARLVEEGVLEHKRRPKTINL 390
>gi|336383501|gb|EGO24650.1| hypothetical protein SERLADRAFT_449409 [Serpula lacrymans var.
lacrymans S7.9]
Length = 636
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 183/387 (47%), Gaps = 59/387 (15%)
Query: 4 RIIALIDMDCFYC---QVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R++AL D D FY QV L+P++ P+ V Q+ +IAVNY AR G++R
Sbjct: 48 RVVALCDSDAFYAACEQVRLGLDPNV---PMVVQQWEA-----LIAVNYPARKFGISRMD 99
Query: 61 RGDEAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVLSEF- 103
R +AK+ CPE+ V + + K + YR ++I + E
Sbjct: 100 RVKDAKKRCPELIAVHVATYKEGQKEPGYWDDVDSHTHKVSLDYYRRESMKIINMFKENL 159
Query: 104 -SNIVERASIDEAYIDLTDVVHER-------MKSIGHIAASQLSNTF---------VVGF 146
+E+ASIDEA+ID T V E+ + + H A + + + +GF
Sbjct: 160 PGGEIEKASIDEAFIDFTRPVREKILERYPYLAEVPHDAPNGIDSPLPPPPPISWNAIGF 219
Query: 147 -GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 205
P E A G G+ D D++ + L+IA ++++IR V +K +
Sbjct: 220 LVPVTPSESAGNEGEELLRGE---DDDSTTWHDVA----LSIAAELMDQIRKEVHTKLGY 272
Query: 206 HCSAGIAHNKVLAKLVCGLHKPQKQ--SILPQSSVSMLYANLSIKKVRHLGGKLGDEVVE 263
SAGI+ NK LAKL KP Q SIL +++ L +K+R LGGKLGD + +
Sbjct: 273 TTSAGISRNKFLAKLCASYKKPNSQVCSILRNTAIPNYLRPLPFQKIRFLGGKLGDALAK 332
Query: 264 TLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR-LVSKSIGCCKRFPG 322
ST+ +L SL+++Q F E + W+Y + RGID V + + KS+ K P
Sbjct: 333 EYDVSTVGDLLTISLEEMQRKFGENSI-WVYELLRGIDRSEVKEKSAMFKSMLASKNLP- 390
Query: 323 KTCLATRQDVSHWIQELADEVCERLED 349
+ + HW++ LA E+ RL+D
Sbjct: 391 -KPITNPSEGHHWLRVLAAELALRLKD 416
>gi|312378180|gb|EFR24822.1| hypothetical protein AND_10339 [Anopheles darlingi]
Length = 825
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 125/445 (28%), Positives = 204/445 (45%), Gaps = 58/445 (13%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I IDMD FY QVE LNPSL +P AV Q ++ NY AR G+ +
Sbjct: 86 RVIIHIDMDYFYAQVEEVLNPSLKDRPFAVKQRFC-----VVTSNYIARDLGIRKLQPVK 140
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA CPE+ L V G+ D++KY+ + + ++ F+ VE+ +DE Y+D+T++
Sbjct: 141 EALAICPELVL-----VNGE-DLTKYKAMSQRINEIMHRFTPHVEKLGLDENYLDVTELT 194
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
ER++ + S +SN N + R G++ + D S + E F+
Sbjct: 195 AERLEQLD--GESSISNA---------NVQTERVVGLIHPPPE---DRQRSEYSDRELFR 240
Query: 184 ELAIAGV---------IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
+ G I +EIR + + C AGIAHNK+LAKLV ++KP KQ++L
Sbjct: 241 SCCLCGCDRRLILATHIAQEIRECIFRELGLRCCAGIAHNKLLAKLVGAMNKPNKQTVLL 300
Query: 235 QSSVSMLYANLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
++ S A+L ++ + +G K + E +T+ +L++ L++L H + A L
Sbjct: 301 PTASSSFVASLGCVRSLTGIGEKTAQTLAECCNVTTVTDLQQIELERLARHVGHEQAVRL 360
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD--- 350
IA G D PV KS+G P ++ R D + L + + + +D
Sbjct: 361 KQIALGRDDTPVRQTGKPKSVGLEDSCPA---ISVRADAEEKFRHLLVRLVKNIAEDGRV 417
Query: 351 -----LTLNKRRAQLLTVSFTQETDGKVNSCSR----SIALASYKLQDIVEVSMQVINKT 401
+T+ K + T + D + S R + LA + ++ + M+V +
Sbjct: 418 PIAIKVTVRKFDSTKRTTHRESKQDKLLPSLFRHTSGKLVLAEGAQEKLLAIVMRVFER- 476
Query: 402 NSAPPISDLTPP--LLFLGLSASKF 424
+ DL P + LGLS KF
Sbjct: 477 -----MVDLRQPFNITLLGLSFFKF 496
>gi|392865724|gb|EAS31537.2| sister chromatid cohesion protein [Coccidioides immitis RS]
Length = 665
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 115/426 (26%), Positives = 188/426 (44%), Gaps = 88/426 (20%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R++A ID+D FY Q E +LN + +PLAV Q+ + +IAVNY AR ++R +
Sbjct: 54 RVVAHIDLDAFYAQCEMVRLN-TPRTQPLAVQQWES-----LIAVNYAARPFNISRMITA 107
Query: 63 DEAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVIAVLSE- 102
EAK CP++ V + R K + YR R+++ + +
Sbjct: 108 KEAKARCPQLMTVHVATFREGEGGKWAYREDGDHNVATDKVSLDPYRAESRKILGTIKDG 167
Query: 103 ------------------------------FSNIV--ERASIDEAYIDLTDVVH----ER 126
++N+V E+A IDE +IDL+ +V ER
Sbjct: 168 LVAWAEKVDPCGLGERRTESGGSVKEKEKDWTNMVRIEKAGIDEVFIDLSALVWATLLER 227
Query: 127 MKSIGHIAASQLSN-------TFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ + + + T + +G ++ D + E D D
Sbjct: 228 YPMLQEMEVKREMSERLPRPPTTALDWGKEDELVDLDEGETEE------DDPDW------ 275
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
D + + IV +R + + + CSAGIA NK++AKL +KP KQ+I+ ++
Sbjct: 276 -DDVVMLVGADIVRSVRFMIRERLGYTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAIQ 334
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
K+R LGGKLG ++ T + + EL + L+Q ++ ++ T WLY + RG
Sbjct: 335 QFLGGFKFTKIRMLGGKLGKQIASTFETEQVDELLRVPLEQFKAKLDDDTGMWLYELIRG 394
Query: 300 IDHEPVNARLVSKSIGCCKRF-PGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRR 357
D VN R KS+ K F PG L + W++ A E+ RL E+ + +KRR
Sbjct: 395 NDWSEVNPRTQIKSMISTKSFRPGINSL---EQAEKWLRIFAAEIYGRLVEEGVLEHKRR 451
Query: 358 AQLLTV 363
++LT+
Sbjct: 452 PKVLTI 457
>gi|118403518|ref|NP_001027479.2| polymerase (DNA directed) iota [Xenopus (Silurana) tropicalis]
gi|113197613|gb|AAI21200.1| DNA polymerase iota [Xenopus (Silurana) tropicalis]
Length = 742
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 148/303 (48%), Gaps = 43/303 (14%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
SR+I IDMDCFY QVE NP L KPL + Q ++ NYEAR GVT+ M
Sbjct: 48 ASRVIVHIDMDCFYAQVEMIRNPELRNKPLGIQQKYI-----VVTCNYEARKFGVTKLML 102
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+A++ CP++ L V G+ D++ YR +L EFS VER DE YID+T+
Sbjct: 103 IKDAREKCPQLVL-----VSGE-DLTPYREMSYRATELLEEFSPQVERLGFDENYIDVTE 156
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V ++++ + R GV G VYSD N D
Sbjct: 157 LVDKKLQ---------------------EERGNGRNPGV---CGHVYSDQKM----NVND 188
Query: 182 FQELAIAGV--IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
+ + IA I EIRAA+ ++ AG A NK+LAKLV G HKP +Q+ L S S
Sbjct: 189 WAHVRIAAGSHIASEIRAALYNRLGLTGCAGTASNKLLAKLVSGTHKPNQQTALLHESHS 248
Query: 240 MLYANLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
L +L +K++ +G K +E+L S + +L+ + L+ F A + ++R
Sbjct: 249 HLINSLDHVKRIPGIGYKTSKR-LESLGLSRISDLQACPITLLEKEFGSSVAHRIQMLSR 307
Query: 299 GID 301
G D
Sbjct: 308 GED 310
>gi|255085274|ref|XP_002505068.1| predicted protein [Micromonas sp. RCC299]
gi|226520337|gb|ACO66326.1| predicted protein [Micromonas sp. RCC299]
Length = 236
Score = 142 bits (358), Expect = 1e-30, Method: Composition-based stats.
Identities = 97/270 (35%), Positives = 145/270 (53%), Gaps = 48/270 (17%)
Query: 1 MTSRIIALIDMDCFYCQVECK---LNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVT 57
+ R++ +D+DCFY QVE K ++PS+ PLAV Q++ G+IAVNY ARH+GV
Sbjct: 6 LQRRVVIHLDLDCFYAQVEAKRLGIDPSV---PLAVQQWS-----GLIAVNYPARHRGVK 57
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
RH+ EAK+ PE+ +C V R K + +YR A V++ L++ VERASIDEAY+
Sbjct: 58 RHLNVTEAKKLVPEL-VC-VHQSR-KVSLRRYRRASWRVMSALADRCEHVERASIDEAYV 114
Query: 118 DLTDVVHERMKSIGHIAASQL------SNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDT 171
D+T V + + ++ ++ VV P ++ D R
Sbjct: 115 DVTREVDAAIDGRTNAEIDEMVRDGVNASGAVVPLTPSTSEHDMR--------------- 159
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
LAI I IRAAVL +T F S G+AHNK+LAKL +KP KQ+
Sbjct: 160 -------------LAIGAHICAGIRAAVLHQTGFTMSGGVAHNKMLAKLASARNKPNKQT 206
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEV 261
+ +V+ + +L ++ ++ LGGKLG++V
Sbjct: 207 AVSARAVTEMMESLPMRSIKGLGGKLGEKV 236
>gi|403268064|ref|XP_003926107.1| PREDICTED: DNA polymerase iota isoform 1 [Saimiri boliviensis
boliviensis]
Length = 715
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 81 VRAAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L +
Sbjct: 135 MVEKRLR---QLQSDELSAVTVS--------------------GHVYNNQSINLHDILHI 171
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 172 --RLLVGSQIAAEMREAMYNRLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L S++ +L+ FS K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKT-TKCLEVLGISSVHDLQTFSSKILEKELGISVAQRILKLSFGE 288
Query: 301 DHEPV 305
D+ PV
Sbjct: 289 DNSPV 293
>gi|405952422|gb|EKC20236.1| DNA polymerase iota [Crassostrea gigas]
Length = 734
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 143/490 (29%), Positives = 217/490 (44%), Gaps = 94/490 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I ID+DCFY QVE NP+L KPL + Q N ++ NY AR GVT+ M
Sbjct: 41 RTIVHIDVDCFYAQVEMIRNPTLRDKPLGIQQKNI-----VVTCNYVARKYGVTKLMYIK 95
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L V G+ D++ YRN ++ L +++ VER +DE Y+D++++V
Sbjct: 96 DAKEKCPQLVL-----VSGE-DLTNYRNMSYKISEFLLKYTQYVERLGMDENYLDVSELV 149
Query: 124 HERMKS------IGHIAASQLSNTFVVGFGPDNND--EDARKAGVMEWLGQVYSDTDTSL 175
E MK GH+ FG N D ED G
Sbjct: 150 -ECMKDKTPLTVAGHV------------FGDSNQDSPEDICTCGC--------------- 181
Query: 176 MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQ 235
++ + I I EEIRAA+ + C AGIAHNK+L+KLV HKP +Q+ L
Sbjct: 182 ------YERILIGSHIAEEIRAALYKEMGITCCAGIAHNKLLSKLVGEQHKPNQQTTLFS 235
Query: 236 SSVSMLYANLSIKKVRHLGGKLGDEVVETLQ---CSTMLELEKFSLKQLQSHFEEKTASW 292
S + L K R + G +G L TM +L++ L+ L+ TA
Sbjct: 236 HHASTFMSKLP--KARSIPG-VGSATARRLAEFGVVTMTDLQQCPLEDLKRELGGSTAVT 292
Query: 293 LYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL-EDDL 351
+ ++ GID PV +++ F K+C + ++ + I+EL + RL ED
Sbjct: 293 IKELSEGIDENPVIPYSKPQTLSDEDSF--KSCCSVKE-ANQKIKELVKSLMIRLVEDGR 349
Query: 352 TLNKRRAQLLTVSFTQETDGKVNSCSRSIALASY---------------KLQDIVEVSMQ 396
R LT+ + +N SR + S+ K++D++ M
Sbjct: 350 VAGTVR---LTIRRLSAENKYLNRESRQCNIPSHVISKLSKDNQDQACGKMEDLL---MS 403
Query: 397 VINKTNSAPPISDLTPPLLFLGLSASKFSPLG--SHPSIQQFFKPQDHPEPMT-SEHSSL 453
+ NK + D+ P L L F L S SI FF PQ + + ++HS+
Sbjct: 404 LFNK------LVDVKRP-FHLTLINVAFCNLTERSKNSISHFFSPQKNKSARSENKHSNA 456
Query: 454 PEQSTNHDSK 463
+TN S+
Sbjct: 457 DHSNTNQKSE 466
>gi|226958460|ref|NP_036102.2| DNA polymerase iota isoform 2 [Mus musculus]
gi|350640293|gb|AEQ34092.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 196/410 (47%), Gaps = 51/410 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L +PL V Q ++ NYEAR GV + M
Sbjct: 46 SSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLMN 100
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+S+YR +V +L EFS VER DE ++DLT+
Sbjct: 101 VRDAKEKCPQLVL-----VNGE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTE 154
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + ++ + V G VY++ +L
Sbjct: 155 MVEKRLQ---QLPSEEVPSVTV--------------------FGHVYNNQSVNLHNIMH- 190
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 191 -RRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHL 249
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L +++ +L+ F +K L+ A + ++ G
Sbjct: 250 IHSLNHIKEIPGIGYKTAKR-LEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGE 308
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D PV +S F K C ++ + I+EL + R+ D R+
Sbjct: 309 DKSPVTPSGPPQSFSEEDTF--KKC-SSEVEAKAKIEELLSSLLTRVCQD----GRKPHT 361
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
+ + + +D N SR + S+ +Q + +S PP+ D+
Sbjct: 362 VRLVIRRYSDKHCNRESRQCPIPSHVIQKL------GTGNHDSMPPLIDI 405
>gi|157821829|ref|NP_001099607.1| DNA polymerase iota [Rattus norvegicus]
gi|149064586|gb|EDM14789.1| polymerase (DNA directed), iota (predicted), isoform CRA_c [Rattus
norvegicus]
Length = 732
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 189/390 (48%), Gaps = 45/390 (11%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 46 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 100
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+S+YR +V +L EFS VER DE ++DLT+
Sbjct: 101 VRDAKEKCPQLVL-----VNGE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTE 154
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + ++ + G VY++ +L +T
Sbjct: 155 MVEKRLQQLPSDEVPSVTMS-----------------------GHVYNNQSVNLHSSTH- 190
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
LA+ I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 191 -VRLAVGSQIAAEMREAMHNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHL 249
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L +++ +L+ F +K L+ A + ++ G
Sbjct: 250 IHSLNHIKEMPGIGYKTAKR-LEVLGINSVHDLQTFPIKTLEKELGISVAQRIRKLSFGE 308
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D PV +S F K C ++ + I+EL + R+ D R+
Sbjct: 309 DKSPVTPSGPPQSFSEEDTF--KKC-SSEVEAKTKIEELLSSLLNRVCHD----GRKPHT 361
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDI 390
+ + + +D N SR + S+ +Q +
Sbjct: 362 IRLVIRRYSDKHCNRESRQCPIPSHVIQKL 391
>gi|5739300|gb|AAD50424.1|AF151691_1 DNA polymerase iota [Mus musculus]
Length = 717
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 196/410 (47%), Gaps = 51/410 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L +PL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+S+YR +V +L EFS VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + ++ + V G VY++ +L
Sbjct: 135 MVEKRLQ---QLPSEEVPSVTV--------------------FGHVYNNQSVNLHNIMH- 170
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 171 -RRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L +++ +L+ F +K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTAKR-LEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGE 288
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D PV +S F K C ++ + I+EL + R+ D R+
Sbjct: 289 DKSPVTPSGPPQSFSEEDTF--KKC-SSEVEAKAKIEELLSSLLTRVCQD----GRKPHT 341
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
+ + + +D N SR + S+ +Q + +S PP+ D+
Sbjct: 342 VRLVIRRYSDKHCNRESRQCPIPSHVIQKL------GTGNHDSMPPLIDI 385
>gi|350640297|gb|AEQ34094.1| DNA polymerase iota [Mus musculus]
gi|350640305|gb|AEQ34098.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 196/410 (47%), Gaps = 51/410 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L +PL V Q ++ NYEAR GV + M
Sbjct: 46 SSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLMN 100
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+S+YR +V +L EFS VER DE ++DLT+
Sbjct: 101 VRDAKEKCPQLVL-----VNGE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTE 154
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + ++ + V G VY++ +L
Sbjct: 155 MVEKRLQ---QLPSEEVPSVTV--------------------FGHVYNNQSVNLHNIMH- 190
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 191 -RRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHL 249
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L +++ +L+ F +K L+ A + ++ G
Sbjct: 250 IHSLNHIKEIPGIGYKTAKR-LEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGE 308
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D PV +S F K C ++ + I+EL + R+ D R+
Sbjct: 309 DKSPVTPSGPPQSFSEEDTF--KKC-SSEVEAKAKIEELLSSLLTRVCQD----GRKPHT 361
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
+ + + +D N SR + S+ +Q + +S PP+ D+
Sbjct: 362 VRLVIRRYSDKHCNRESRQCPIPSHVIQKL------GTGNHDSMPPLIDI 405
>gi|351700533|gb|EHB03452.1| DNA polymerase iota [Heterocephalus glaber]
Length = 696
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 159/306 (51%), Gaps = 38/306 (12%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
++SR+I +D+DCFY QVE NP L KPL V Q + +I NYEAR GV + M
Sbjct: 25 ISSRVIVHVDLDCFYAQVEMISNPELKNKPLGVQQKSF-----VITCNYEARKLGVKKCM 79
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+ +AK+ CP++ L V G+ D+++YR +V +L EF+ +VER DE ++DLT
Sbjct: 80 KVKDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLGEFTPLVERLGFDENFVDLT 133
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+V +R++ + +DE A + G +Y++ L +
Sbjct: 134 QMVEKRLQQL-------------------QSDELA----AVTVSGHLYNNQSVDLHDTMH 170
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVS 239
L I I E+R A+ ++ AGIA NK+LAKLV G+ KP +Q++ LP+S
Sbjct: 171 --VRLLIGSQIAAEMRKAMYNQLGLTGCAGIASNKLLAKLVSGVFKPNQQTVLLPESCQD 228
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
++ A +K++ +G K + +E L ++ +L+ FS K L+ F A + ++ G
Sbjct: 229 LILALNHVKEIPGIGYKTA-KCLEALGIHSVHDLQTFSSKILEKEFGISLAQHIQKLSFG 287
Query: 300 IDHEPV 305
D+ V
Sbjct: 288 EDNSSV 293
>gi|350640291|gb|AEQ34091.1| DNA polymerase iota [Mus musculus]
gi|350640303|gb|AEQ34097.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 196/410 (47%), Gaps = 51/410 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L +PL V Q ++ NYEAR GV + M
Sbjct: 46 SSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLMN 100
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+S+YR +V +L EFS VER DE ++DLT+
Sbjct: 101 VRDAKEKCPQLVL-----VNGE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTE 154
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + ++ + V G VY++ +L
Sbjct: 155 MVEKRLQ---QLPSEEVPSVTV--------------------FGHVYNNQSVNLHNIMH- 190
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 191 -RRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHL 249
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L +++ +L+ F +K L+ A + ++ G
Sbjct: 250 IHSLNHIKEIPGIGYKTAKR-LEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGE 308
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D PV +S F K C ++ + I+EL + R+ D R+
Sbjct: 309 DKSPVTPSGPPQSFSEEDTF--KKC-SSEVEAKAKIEELLSSLLTRVCQD----GRKPHT 361
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
+ + + +D N SR + S+ +Q + +S PP+ D+
Sbjct: 362 VRLVIRRYSDKHCNRESRQCPIPSHVIQKL------GTGNHDSMPPLIDI 405
>gi|67010005|ref|NP_001019863.1| DNA polymerase iota [Bos taurus]
gi|66393909|gb|AAY46031.1| DNA polymerase iota [Bos taurus]
Length = 747
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 157/305 (51%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+ R+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 61 SCRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMS 115
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 116 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 169
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G +N + R DT +
Sbjct: 170 MVEKRLE---QLQSDELSALTVSGHVYNNQPVNPR---------------DTLHI----- 206
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + IV E+R A+ + AG+A NK+LAKLV G+ KP +Q++ LP+SS +
Sbjct: 207 --RLLVGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQEL 264
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L S++ +L+ F K L+ A + ++ G
Sbjct: 265 IHSLNHIKEMPGIGYKTTKR-LEALGISSVRDLQTFPSKVLEKELGISVAQRIQKLSFGE 323
Query: 301 DHEPV 305
D PV
Sbjct: 324 DDSPV 328
>gi|59798311|sp|Q6R3M4.1|POLI_MOUSE RecName: Full=DNA polymerase iota; AltName: Full=Rad30 homolog B
gi|45738074|gb|AAS75834.1| DNA polymerase iota [Mus musculus]
Length = 717
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 196/410 (47%), Gaps = 51/410 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L +PL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+S+YR +V +L EFS VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + ++ + V G VY++ +L
Sbjct: 135 MVEKRLQ---QLPSEEVPSVTV--------------------FGHVYNNQSVNLHNIMH- 170
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 171 -RRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L +++ +L+ F +K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTAKR-LEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGE 288
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D PV +S F K C ++ + I+EL + R+ D R+
Sbjct: 289 DKSPVTPSGPPQSFSEEDTF--KKC-SSEVEAKAKIEELLSSLLTRVCQD----GRKPHT 341
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
+ + + +D N SR + S+ +Q + +S PP+ D+
Sbjct: 342 VRLVIRRYSDKHCNRESRQCPIPSHVIQKL------GTGNHDSMPPLIDI 385
>gi|327352728|gb|EGE81585.1| sister chromatid cohesion protein [Ajellomyces dermatitidis ATCC
18188]
Length = 549
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 128/476 (26%), Positives = 210/476 (44%), Gaps = 97/476 (20%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RIIA ID+D FY Q E +LN + +PLAV Q+ + +IAVNY AR +TR +
Sbjct: 29 RIIAHIDLDAFYAQCEMVRLN-TPRTQPLAVQQWES-----LIAVNYAARAFNITRMLTA 82
Query: 63 DEAKQHCPEIELCRVPSVR-------------------GKADISKYRNAGREVI----AV 99
EA++ CP++ V + R K + YR R ++ A
Sbjct: 83 AEARKRCPQLVTQHVATFREGEGAQWKYRDDAAECVATDKVSLEPYRVESRRILEGIRAA 142
Query: 100 LSEFSN---------------------------------IVERASIDEAYIDLTDVVHER 126
L+ ++ VE+A IDE ++DL+ +V+E
Sbjct: 143 LAAWAEGVMRDVGGGGGGGEGRGGGGTKNELQLQLQQLVRVEKAGIDEVFVDLSALVYET 202
Query: 127 MKSIGHIAASQLSNTFVVGFGPDNNDEDAR----KAGVMEWLGQ-VYSDTDTSLMENTE- 180
+ L ++ G D R V+EW + + D D E +
Sbjct: 203 L----------LDRHPMLREGEVGRDMSERLPRPPTTVLEWGKEDMLVDLDAGQAEEDDP 252
Query: 181 DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
D+ + + I IV +RA + + ++ CSAGIA NK++AKL +KP KQ+I+ +V
Sbjct: 253 DWDDVCMLIGADIVRSVRATIWERLKYTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAV 312
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
++R LGGKLG +V + L ++QL+ + T +WLY + R
Sbjct: 313 QQFLGGFKFTQIRMLGGKLGKQVAAIFGTDEVGGLLHVPVEQLRLKLGDDTGTWLYELLR 372
Query: 299 GIDHEPVNARLVSKSIGCCKRF-PGKTCLATRQDVSHWIQELADEVCER-LEDDLTLNKR 356
G ++ V+ R KS+ K F PG + + W++ ++ R LE+ + NKR
Sbjct: 373 GYEYSEVSVRTQIKSMLSTKSFRPG---IQSSTQAEKWLRIFVADIYGRLLEEGVLENKR 429
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYK------LQDIVEVSM-QVINKTNSAP 405
R +++T+ T G+ SR I + + + L D+ + + QV+N+ N P
Sbjct: 430 RPKVITIH--HRTAGQTR--SRQIPIPTGRPITDTFLFDLAKTLLAQVVNEGNIWP 481
>gi|296473688|tpg|DAA15803.1| TPA: DNA polymerase iota [Bos taurus]
Length = 747
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 157/305 (51%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+ R+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 61 SCRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMS 115
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 116 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 169
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G +N + R DT +
Sbjct: 170 MVEKRLE---QLQSDELSALTVSGHVYNNQPVNPR---------------DTLHI----- 206
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + IV E+R A+ + AG+A NK+LAKLV G+ KP +Q++ LP+SS +
Sbjct: 207 --RLLVGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQEL 264
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L S++ +L+ F K L+ A + ++ G
Sbjct: 265 IHSLNHIKEMPGIGYKTTKR-LEALGISSVRDLQTFPSKVLEKELGISVAQRIQKLSFGE 323
Query: 301 DHEPV 305
D PV
Sbjct: 324 DDSPV 328
>gi|350640295|gb|AEQ34093.1| DNA polymerase iota [Mus musculus]
gi|350640301|gb|AEQ34096.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 196/410 (47%), Gaps = 51/410 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L +PL V Q ++ NYEAR GV + M
Sbjct: 46 SSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLMN 100
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+S+YR +V +L EFS VER DE ++DLT+
Sbjct: 101 VRDAKEKCPQLVL-----VNGE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTE 154
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + ++ + V G VY++ +L
Sbjct: 155 MVEKRLQ---QLPSEEVPSVTV--------------------FGHVYNNQSVNLHNIMH- 190
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 191 -RRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHL 249
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L +++ +L+ F +K L+ A + ++ G
Sbjct: 250 IHSLNHIKEIPGIGYKTAKR-LEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGE 308
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D PV +S F K C ++ + I+EL + R+ D R+
Sbjct: 309 DKSPVTPSGPPQSFSEEDTF--KKC-SSEVEAKAKIEELLSSLLTRVCKD----GRKPHT 361
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
+ + + +D N SR + S+ +Q + ++ PP+ D+
Sbjct: 362 VRLVIRRYSDKHCNRESRQCPIPSHVIQKL------GTGNHDAMPPLIDI 405
>gi|296222687|ref|XP_002757293.1| PREDICTED: DNA polymerase iota isoform 1 [Callithrix jacchus]
Length = 738
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 159/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 49 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 103
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 104 VRVAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 157
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V LG VY++ +L +
Sbjct: 158 MVEKRLQ---QLQSDELSAVTV--------------------LGHVYNNQSINLHDILHI 194
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKL G+ KP +Q++ LP+S +
Sbjct: 195 --RLLVGSQIAAEMREAMYNRLGLTGCAGVASNKLLAKLASGVFKPNQQTVLLPESCQHL 252
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 253 IHSLNHIKEIPGIGCKT-TKCLEALGINSVHDLQTFSSKILEKELGISVAQRILKLSFGE 311
Query: 301 DHEPV 305
D+ PV
Sbjct: 312 DNSPV 316
>gi|291399949|ref|XP_002716300.1| PREDICTED: DNA polymerase iota, partial [Oryctolagus cuniculus]
Length = 709
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 172/346 (49%), Gaps = 43/346 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 50 RIIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMTVK 104
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT++V
Sbjct: 105 DAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEIV 158
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+R++ + + +LS V G VY++ +L +
Sbjct: 159 EKRLQ---QLPSDELSAATVS--------------------GHVYNNQPVNLHDVLH--I 193
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSMLY 242
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +++
Sbjct: 194 RLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQDLMH 253
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+ IK++ +G K +E L +++ +L+ FS K L+ A + ++ G D+
Sbjct: 254 SLNHIKEMPGVGYKTTKR-LEALGITSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDN 312
Query: 303 EPVNARLVSKSIGCCKRFPGKTC---LATRQDVSHWIQELADEVCE 345
PV +S F K C + R+ + + L + VC+
Sbjct: 313 SPVIPSGPPQSFSEEDSF--KKCSSEVEVRKKIEELLTSLLNRVCQ 356
>gi|440902693|gb|ELR53451.1| DNA polymerase iota, partial [Bos grunniens mutus]
Length = 694
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/348 (29%), Positives = 169/348 (48%), Gaps = 47/348 (13%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+ R+I +D+DCFY QVE NP L KPLA + ++ NYEAR GV + M
Sbjct: 12 SCRVIVHVDLDCFYAQVEMISNPELKDKPLAYL---------VVTCNYEARKLGVKKLMS 62
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 63 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 116
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G +N + R + L
Sbjct: 117 MVEKRLE---QLQSDELSALTVSGHVYNNQPVNPRDMLHIRLL----------------- 156
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ IV E+R A+ + AG+A NK+LAKLV G+ KP +Q++ LP+SS +
Sbjct: 157 -----VGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQEL 211
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L S++ +L+ F K L+ A + ++ G
Sbjct: 212 IHSLNHIKEMPGIGYKTTKR-LEALGISSVRDLQTFPSKILEKELGISVAQRIQKLSFGE 270
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTC---LATRQDVSHWIQELADEVCE 345
D PV +S F K C + + + + L + VC+
Sbjct: 271 DDSPVTPSGPPQSFSEEDSF--KKCSSEVEAKTKIEELLASLLNRVCQ 316
>gi|70955242|gb|AAZ16247.1| DNA polymerase iota [Xenopus (Silurana) tropicalis]
Length = 742
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 147/301 (48%), Gaps = 39/301 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
SR+I IDMDCFY QVE NP L KPL + Q ++ NYEAR GVT+ M
Sbjct: 48 ASRVIVHIDMDCFYAQVEMIRNPELRNKPLGIQQKYI-----VVTCNYEARKFGVTKLML 102
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+A++ CP++ L V G+ D++ YR +L EFS VER DE YID+T+
Sbjct: 103 IKDAREKCPQLVL-----VSGE-DLTPYREMSYRATELLEEFSPQVERLGFDENYIDVTE 156
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V ++++ + R GV G VYSD ++ N
Sbjct: 157 LVDKKLQ---------------------EERGNGRNPGV---CGHVYSDQKMNV--NNWA 190
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+A I EIRAA+ ++ AG A NK+LAKLV G HKP +Q+ L S S L
Sbjct: 191 HVRIAAGSHIASEIRAALYNRLGLTGCAGTASNKLLAKLVSGTHKPNQQTALLHESHSHL 250
Query: 242 YANLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+L +K++ +G K +E+L S + +L+ + L+ F A + ++RG
Sbjct: 251 INSLDHVKQIPGIGYKTSKR-LESLGLSRISDLQACPITLLEKEFGSSVAHRIQMLSRGE 309
Query: 301 D 301
D
Sbjct: 310 D 310
>gi|347969379|ref|XP_312847.5| AGAP003157-PA [Anopheles gambiae str. PEST]
gi|333468498|gb|EAA08441.5| AGAP003157-PA [Anopheles gambiae str. PEST]
Length = 807
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 128/442 (28%), Positives = 203/442 (45%), Gaps = 47/442 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I IDMD +Y QVE LNPSL KP AV Q ++ NY AR KG+ +
Sbjct: 16 RVIIHIDMDYYYAQVEEVLNPSLKDKPFAVKQRFC-----VVTSNYIAREKGIKKLQPVK 70
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA CPE+ L + G+ DI+KY+ + ++ F+ VE+ +DE Y+D+T+++
Sbjct: 71 EALAACPELVL-----LNGE-DITKYKAMSVRINEIMHRFTPHVEKLGLDENYLDVTELI 124
Query: 124 HERMKSI-GHIAASQLSNT-FVVGF-GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
ER++ + G ++ L+ FV GF P DE + + +TD L
Sbjct: 125 AERLEQLEGAGDSAALAKLDFVQGFIHPPRTDESS------ALDPPSHRETDRDLFRRCC 178
Query: 181 DFQE---LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
L +A + +EIR + + C AGIAHNK+LAKLV +HK KQ++L +
Sbjct: 179 CCGCDRRLILATHLAQEIRDCIFQELGLRCCAGIAHNKLLAKLVGAVHKQNKQTVLLPTH 238
Query: 238 VSMLYANL-SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
+ A+L S++ + +G K + ++ ST+ +L+ L +L H + A L +
Sbjct: 239 ATAFVASLGSVRSLTGIGEKTAQTLADSCGISTVTDLQCIELDRLTKHLGYEQAVRLKQL 298
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD------ 350
A G D V KS+G P ++ R D + L + + + DD
Sbjct: 299 ALGRDDTVVRQTGKPKSVGLEDSCPS---ISVRADAEDKFRHLLVRLVKNIADDGRVPIA 355
Query: 351 --LTLNKRRAQLLTVSFTQETDGKVNSCSRSIA----LASYKLQDIVEVSMQVINKTNSA 404
+T+ K T + D + S R + LA + I+ + M+V +
Sbjct: 356 IKVTVRKYDLAKRTTHRESKQDKLLPSMFRHVGGRLVLADGAQEKILTIVMKVFER---- 411
Query: 405 PPISDLTPP--LLFLGLSASKF 424
+ DL P + LGLS KF
Sbjct: 412 --MVDLRQPFNITLLGLSFFKF 431
>gi|74208215|dbj|BAE26322.1| unnamed protein product [Mus musculus]
Length = 717
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 196/410 (47%), Gaps = 51/410 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L +PL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+S+YR +V +L EFS VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + ++ + V G VY++ +L
Sbjct: 135 MVEKRLQ---QLPSEEVPSVTV--------------------FGHVYNNQSVNLHNIMH- 170
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 171 -RRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L +++ +L+ F +K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTAKR-LEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGE 288
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D PV +S F K C ++ + I+EL + R+ D R+
Sbjct: 289 DKSPVTPSGPPQSFSEEDTF--KKC-SSEVEAKAKIEELLSSLLTRVCKD----GRKPHT 341
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
+ + + +D N SR + S+ +Q + ++ PP+ D+
Sbjct: 342 VRLVIRRYSDKHCNRESRQCPIPSHVIQKL------GTGNHDAMPPLIDI 385
>gi|45738076|gb|AAS75835.1| DNA polymerase iota [Mus musculus]
Length = 717
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 196/410 (47%), Gaps = 51/410 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L +PL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+S+YR +V +L EFS VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + ++ + V G VY++ +L
Sbjct: 135 MVEKRLQ---QLPSEEVPSVTV--------------------FGHVYNNQSVNLHNIMH- 170
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 171 -RRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L +++ +L+ F +K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTAKR-LEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGE 288
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D PV +S F K C ++ + I+EL + R+ D R+
Sbjct: 289 DKSPVTPSGPPQSFSEEDTF--KKC-SSEVEAKAKIEELLSSLLTRVCKD----GRKPHT 341
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
+ + + +D N SR + S+ +Q + ++ PP+ D+
Sbjct: 342 VRLVIRRYSDKHCNRESRQCPIPSHVIQKL------GTGNHDAMPPLIDI 385
>gi|395332120|gb|EJF64499.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 725
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 181/410 (44%), Gaps = 84/410 (20%)
Query: 4 RIIALIDMDCFYC---QVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R++AL D D FY QV ++P+L PL V Q+++ +IAVNY AR G++R
Sbjct: 54 RVVALCDSDAFYAACEQVRLGVDPTL---PLVVQQWDS-----LIAVNYPARKYGISRMD 105
Query: 61 RGDEAKQHCPEIELCRV---------------PSVRG-KADISKYRNAGREVIAVLSEF- 103
+ +AK+ CP + + V P R K + YR ++I + E
Sbjct: 106 KIKDAKKRCPNLVVVHVATYKEGEAEPGYWENPDTRTHKVSLDHYRRESMKIIELFKEGL 165
Query: 104 -SNIVERASIDEAYIDLTDVVHER-MKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161
+ VE+ASIDEA+ID T V E ++ H+A+ V P+ D +
Sbjct: 166 PNGEVEKASIDEAFIDFTRPVREELLRRYPHLAS-------VPADAPNGMDTPLPPPPPV 218
Query: 162 EW--LGQVY----------SDTDTSL----------MENTEDFQEL-------------- 185
W G V TD+S +E EL
Sbjct: 219 SWENKGTVVPVFPRKERPEEKTDSSPSGDAIEGEPNVEGGSKTPELEGEDDAVEEDDENT 278
Query: 186 -------AIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
+IA ++ IR + +K + SAG+A NK LAKL KP Q+IL +++
Sbjct: 279 TWHDVALSIAAELMMRIREDIRTKLGYTTSAGLARNKFLAKLTASYKKPMNQTILRNAAI 338
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
+ +K+R LGGKLG + E ST+ +L SL+++Q F E + W+Y I R
Sbjct: 339 PNYLRPMPFQKIRFLGGKLGKALAEEYDVSTVSDLLTISLEEMQRKFGENSI-WVYEILR 397
Query: 299 GIDHEPVNAR-LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
GID V + V+KS+ K P A + HWI+ LA E+ RL
Sbjct: 398 GIDRTEVKEKSAVNKSMLASKNLPQPITKAA--EGYHWIRVLAAELALRL 445
>gi|291394393|ref|XP_002713588.1| PREDICTED: DNA polymerase iota [Oryctolagus cuniculus]
Length = 733
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 172/346 (49%), Gaps = 43/346 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 50 RIIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMTVK 104
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT++V
Sbjct: 105 DAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEIV 158
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+R++ + + +LS V G VY++ +L +
Sbjct: 159 EKRLQ---QLPSDELSAATVS--------------------GHVYNNQPVNLHDVLH--I 193
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSMLY 242
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +++
Sbjct: 194 RLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQDLMH 253
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+ IK++ +G K +E L +++ +L+ FS K L+ A + ++ G D+
Sbjct: 254 SLNHIKEMPGVGYKTTKR-LEALGITSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDN 312
Query: 303 EPVNARLVSKSIGCCKRFPGKTC---LATRQDVSHWIQELADEVCE 345
PV +S F K C + R+ + + L + VC+
Sbjct: 313 SPVIPSGPPQSFSEEDSF--KKCSSEVEVRKKIEELLTSLLNRVCQ 356
>gi|410923585|ref|XP_003975262.1| PREDICTED: DNA polymerase iota-like [Takifugu rubripes]
Length = 710
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 175/369 (47%), Gaps = 48/369 (13%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
TSR+I D+DCFY QVE NP+L PL + Q ++ NY AR GVT+ M
Sbjct: 45 TSRVILHFDLDCFYAQVEMIRNPALREVPLGIQQKYI-----VVTCNYVARQMGVTKLMS 99
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
AK+ CP++ L V+G+ D++ YR +V +L + +VER DE ++D+T
Sbjct: 100 VVNAKEKCPQLVL-----VKGE-DLTHYREMSYKVTDLLMSYCPLVERLGFDENFMDITG 153
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
++ +R+ + +D D + G VY + D
Sbjct: 154 MIEKRLA--------------------ETSDCD------FSFKGHVYGHVSAGV--KASD 185
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSM 240
LA+ I E+R A+ K AGIA NK+LAKLV G KP +Q S+LP++ +
Sbjct: 186 HPRLALGSHIAAELREAIQCKLGLTGCAGIATNKLLAKLVSGTFKPNQQTSLLPENIGDI 245
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ S++KV +G + + ++ L +T+ +L+ F + L F TA L + G+
Sbjct: 246 VGCLNSLRKVPGVGHQTAKK-LQALGLATVKDLQHFPVNNLVKEFGGPTAQRLKSLVLGV 304
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D PV +S+ F +++ ++V IQEL + +R++ D R+ Q
Sbjct: 305 DDSPVTPTGAPQSLSDEDSFKK---MSSMKEVLEKIQELLRSLVDRMQKD----GRQPQT 357
Query: 361 LTVSFTQET 369
L ++ + T
Sbjct: 358 LRLTIRRYT 366
>gi|134112233|ref|XP_775092.1| hypothetical protein CNBE3660 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257744|gb|EAL20445.1| hypothetical protein CNBE3660 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 708
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 173/395 (43%), Gaps = 64/395 (16%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
+T IA D+D Y Q E PL Q+ + IIAVNY AR G+ R
Sbjct: 28 LTPATIAHCDIDAAYAQFEQVRLGLPDDIPLICAQWQS-----IIAVNYPARKYGIKRFT 82
Query: 61 RGDEAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEF- 103
++AK+ CP + + V + R K + YR +++A+ E
Sbjct: 83 SIEDAKKMCPHLRIQHVATYRNGESEAGYWDDVDPRTHKVSLDVYRRESLKILAIFKEKI 142
Query: 104 -SNIVERASIDEAYIDLTDVVHERMKSI----------------------GHIAASQLSN 140
+E+ASIDEA++DLT +V ER+ + I S +
Sbjct: 143 PRGEIEKASIDEAFLDLTPMVIERLLAAHPYLSKVPEDAPNGLDSPLPPPPPIDWSNAGS 202
Query: 141 TFVV-----GFGPD---NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIV 192
F + G G D + +ED R E+ G+ T S ++ ED+ L + G ++
Sbjct: 203 VFPIDGKEDGSGTDHQEDKEEDERSEDGDEFDGR----TSGSNRDSWEDWA-LCMGGELM 257
Query: 193 EEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRH 252
+R V + + C+AGIAHNK +AKL KP Q+IL ++V +R
Sbjct: 258 SNVREEVYLRLHYTCTAGIAHNKAMAKLCSAWKKPNNQTILRTAAVPAFLNGRDFTDIRS 317
Query: 253 LGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSK 312
LGGKLG + + T SL ++Q F E++ W+Y I RGIDH V R+ +K
Sbjct: 318 LGGKLGAAIAQQFGAKTR---RTVSLDEMQRKFGEESI-WVYNILRGIDHSEVTDRVATK 373
Query: 313 SIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
S+ K + + + Q W+ LA E+ RL
Sbjct: 374 SMLASKSI--RPAVTSPQQGHQWLSILAGELNVRL 406
>gi|402903152|ref|XP_003914442.1| PREDICTED: DNA polymerase iota [Papio anubis]
Length = 737
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 48 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 102
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 103 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 156
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L +
Sbjct: 157 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLHDILH- 192
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L I I E+R A+ + AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 193 -IRLLIGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 251
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ + IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 252 ILSLNHIKEIPGIGYKTA-KCLEALGINSVHDLQTFSSKILEKELGISLAQRIQKLSFGE 310
Query: 301 DHEPV 305
D+ PV
Sbjct: 311 DNSPV 315
>gi|452984835|gb|EME84592.1| hypothetical protein MYCFIDRAFT_203083 [Pseudocercospora fijiensis
CIRAD86]
Length = 667
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 115/399 (28%), Positives = 177/399 (44%), Gaps = 84/399 (21%)
Query: 4 RIIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IA ID+D FY Q E ++P +PLAV Q+ G+IA+NY AR G+ RH+
Sbjct: 43 RVIAHIDLDAFYAQCEMVRLDVDPD---QPLAVQQWQ-----GLIAINYPARAYGLNRHV 94
Query: 61 RGDEAKQHCPEIELCRVPSVRGKAD-------------------ISKYRNAGREVIAVLS 101
EAK+ CP+I +C+ + + D + YR R+++A +
Sbjct: 95 TVTEAKEKCPDI-ICQHVATWKEGDTKWSYSDDAFKEIATRKVSLDPYRIESRKILATIK 153
Query: 102 EF----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK 157
E VE+ASIDE ++DL+ VH S L + P D+
Sbjct: 154 ESLPADKQKVEKASIDEVFLDLSAHVH-----------SLLLQRYPQLDAPPPYDDPTEP 202
Query: 158 -----AGVMEWLGQVYSDTD-TSLMENTEDFQE--LAIAGVIVEEIRAAVLSKTQFHCSA 209
++W D D T E+ D+ + + IA IV ++RA + K ++ CSA
Sbjct: 203 LPKPPTTALDWKADALVDLDNTHNEEDDPDWDDVVMLIASEIVRDVRAQIFRKLKYTCSA 262
Query: 210 GIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCST 269
GI+ NK+LAKL G GGK GDEVV +
Sbjct: 263 GISRNKMLAKLGSG---------------------------SATGGKFGDEVVAAFNTDS 295
Query: 270 MLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATR 329
+ EL S++QL+ + + SWLY + RG D VN R KS+ K F + + +
Sbjct: 296 VSELLAVSIEQLKKQLGDGSGSWLYNVIRGEDDSEVNPRTQIKSMLSAKSF--RPSINSF 353
Query: 330 QDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTVSFTQ 367
+ W++ ++ RL E+ + NKRR + + + Q
Sbjct: 354 EVACKWLRIFVADIFGRLVEEGVLENKRRPKTINIHHRQ 392
>gi|425773935|gb|EKV12260.1| hypothetical protein PDIG_45850 [Penicillium digitatum PHI26]
gi|425782385|gb|EKV20297.1| hypothetical protein PDIP_17780 [Penicillium digitatum Pd1]
Length = 575
Score = 139 bits (351), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 107/401 (26%), Positives = 177/401 (44%), Gaps = 52/401 (12%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I LID DCFY Q E +L S PL V Q+ IIA+NY AR G+ R +
Sbjct: 28 RVITLIDYDCFYAQCESVRLGIS-SDVPLGVQQWE-----AIIALNYPARANGLARGISV 81
Query: 63 DEAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAVLSEF- 103
+EA+ CP + L VP+ R KA + YR R+ + ++
Sbjct: 82 EEARVKCPNLILQHVPTWREGCASWAYRPVSTIMPGTDKAALGPYRLESRKGLELIKSTL 141
Query: 104 ----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR--- 156
+E+AS+DE Y+DL+ VH S L + +++ +D
Sbjct: 142 PHSPPQKIEKASVDEMYLDLSAQVH-----------SILLQRYPALLDVESSSKDEMLPL 190
Query: 157 -KAGVMEWLGQVYSDTDTSLMENTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAH 213
+ V+ W D ++ D+ ++A I IV+ IR + ++ CSAGIA
Sbjct: 191 PRTSVLNWHADAVFGADAE--DDHFDWDDIALNIGSEIVDNIRREIFKHMRYTCSAGIAR 248
Query: 214 NKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL 273
NK+LAKL G +KP Q+++ + + K+R LGG LG ++ E + EL
Sbjct: 249 NKMLAKLASGYNKPNHQTVILRRGTREFLSTHKFTKIRGLGGLLGTQISEKFNTKMVSEL 308
Query: 274 EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVS 333
L Q++ + +W++ + RG + VN R+ +S+ K F K + + +
Sbjct: 309 LAIPLSQMKEEMGLEVGAWVFNVIRGEEQSEVNPRMHVQSMLSAKTFVPK--IVSIDQAA 366
Query: 334 HWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVN 374
W++ ++ RL D+L R ++ +G+
Sbjct: 367 KWLRIFVADLLGRL-DELGSENHRISPTIITLNHHIEGRFG 406
>gi|91086917|ref|XP_971585.1| PREDICTED: similar to DNA polymerase iota [Tribolium castaneum]
gi|270009670|gb|EFA06118.1| hypothetical protein TcasGA2_TC008961 [Tribolium castaneum]
Length = 537
Score = 139 bits (351), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 159/318 (50%), Gaps = 51/318 (16%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR I ID+DCFY QVE NPSL PL + Q N ++ NY AR G+ + M
Sbjct: 8 SRTIIHIDLDCFYAQVEMNKNPSLRTVPLGIQQKNI-----VVTSNYTAREFGIKKCMLI 62
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP + L V G+ D+ YR +V +L +++ +VER +DE Y+D+T +
Sbjct: 63 PEAKKLCPSLVL-----VNGE-DLHDYRQTSYKVTNLLQKYTPLVERLGLDENYLDVTTL 116
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDT-DTSLMENTED 181
++E++ N D ++ +G V+ DT D TE
Sbjct: 117 INEKL----------------------NQKSD------LKLVGNVFGDTSDKCECGCTE- 147
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-PQSSVSM 240
L IA + +EIR + S+ AGIAHNK+LAK+ HKP +Q+++ P S++ +
Sbjct: 148 --RLIIATTVAQEIRDVIKSELNLTSCAGIAHNKLLAKIAGARHKPNQQTVVFPNSALEL 205
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQC---STMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+ LS+ + G +G + E L+C T+ EL+ LK+L++ + A ++ ++
Sbjct: 206 I---LSLNAPNDIPG-IGRALFEQLKCIGVETIEELQNVDLKRLETVLGQDKAKLVHELS 261
Query: 298 RGIDHEPVNARLVSKSIG 315
GID V +SIG
Sbjct: 262 LGIDKSGVKPTGKPQSIG 279
>gi|432872403|ref|XP_004072098.1| PREDICTED: DNA polymerase iota-like [Oryzias latipes]
Length = 680
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 182/391 (46%), Gaps = 49/391 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I D+DCFY QVE +PSL PL + Q I+ NY AR +GVT+ M
Sbjct: 41 RVILHFDLDCFYAQVEMIRDPSLREVPLGIQQKYI-----IVTCNYVARERGVTKLMSVT 95
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CPE+ L VRG+ D++ YR A +V +LS F +VER DE ++D+T++V
Sbjct: 96 DAKEKCPELVL-----VRGE-DLTLYREASHQVTELLSSFCPLVERLGFDENFMDVTEMV 149
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
RMK S G VY+ ++ + + D
Sbjct: 150 ERRMKETPPPEGYSFS-------------------------GHVYNPSNAEI--SGSDHP 182
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
LA+ I E+R AV S+ AG+A NK+LAKLV G KP +Q++L V +
Sbjct: 183 RLALGSYIAAELRDAVHSRLGLTGCAGVATNKLLAKLVSGTFKPNQQTVLLPEDVGHIME 242
Query: 244 NL-SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L ++KV +G + + + L ++ +L+ L L F A L ++ G+D
Sbjct: 243 SLGGVRKVPGVGHQTAKK-LHQLGVVSVKDLQLLPLPDLVKEFGGAVARRLRNLSLGVDD 301
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL-- 360
PV +S+ F +++ +V IQ+L + ER++ D R+ Q
Sbjct: 302 SPVTPSGAPQSLSDEDSF---KKMSSEAEVVEKIQQLLSRLVERMQKD----GRQPQTFR 354
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIV 391
LT+ T+ + SR + S+ Q I+
Sbjct: 355 LTIRRYTPTNKWFSRESRQCPIPSHLGQKIL 385
>gi|441602786|ref|XP_003267571.2| PREDICTED: DNA polymerase iota isoform 1 [Nomascus leucogenys]
Length = 715
Score = 139 bits (350), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 159/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHMDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L +
Sbjct: 135 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLHDILH- 170
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ + AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 171 -IRLLVGSQIAAEMREAMHNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTA-KCLEALGINSVHDLQTFSPKILEKELGISVARRIQELSFGE 288
Query: 301 DHEPV 305
D+ PV
Sbjct: 289 DNSPV 293
>gi|119583405|gb|EAW63001.1| polymerase (DNA directed) iota, isoform CRA_b [Homo sapiens]
Length = 429
Score = 139 bits (350), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 50 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 104
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 105 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 158
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L++
Sbjct: 159 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLHI 195
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 196 --RLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 253
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 254 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 312
Query: 301 DHEPV 305
D+ PV
Sbjct: 313 DNSPV 317
>gi|110591264|pdb|2DPI|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp
gi|110591267|pdb|2DPJ|A Chain A, Structure Of Hpoli With Dna And Dttp
gi|119389500|pdb|2FLN|A Chain A, Binary Complex Of Catalytic Core Of Human Dna Polymerase
Iota With Dna (Template A)
gi|119389503|pdb|2FLP|A Chain A, Binary Complex Of The Catalytic Core Of Human Dna
Polymerase Iota With Dna (Template G)
gi|122920195|pdb|2FLL|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Dna And
Dttp
gi|218681853|pdb|3EPG|A Chain A, Structure Of Human Dna Polymerase Iota Complexed With
N2-Ethylguanine
gi|218681856|pdb|3EPI|A Chain A, Structure Of Human Dna Polymerase Iota Complexed With
N2-Ethylguanine And Incoming Ttp
gi|237640547|pdb|3G6V|A Chain A, Dna Synthesis Across An Abasic Lesion By Human Dna
Polymerase-Iota
gi|237640550|pdb|3G6X|A Chain A, Ternary Complex Of Dna Polymerase Iota:dna:dgtp With An
Abasic Site At The Templating Position
gi|237640553|pdb|3G6Y|A Chain A, Ternary Complex Of Dna Polymerase Iota:dna:dttp With An
Abasic Site At The Templating Position
gi|238828276|pdb|3GV7|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Dttp
gi|238828279|pdb|3GV8|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Dgtp
gi|309319996|pdb|3NGD|A Chain A, Structural Basis For Proficient Incorporation Of Dttp
Opposite O6- Methylguanine By Human Dna Polymerase Iota
gi|309320677|pdb|3OSN|A Chain A, Structural Basis For Proficient Incorporation Of Dttp
Opposite O6- Methylguanine By Human Dna Polymerase Iota
gi|323714640|pdb|3Q8P|B Chain B, Human Dna Polymerase Iota Incorporating Dctp Opposite
8-Oxo-Guanine
gi|323714643|pdb|3Q8Q|B Chain B, Human Dna Polymerase Iota Incorporating Datp Opposite
8-Oxo-Guanine
gi|323714646|pdb|3Q8R|B Chain B, Human Dna Polymerase Iota Incorporating Dgtp Opposite
8-Oxo-Guanine
gi|323714649|pdb|3Q8S|B Chain B, Human Dna Polymerase Iota Incorporating Dttp Opposite
8-Oxo-Guanine
gi|390981111|pdb|4EBC|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
gi|390981114|pdb|4EBD|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
gi|390981117|pdb|4EBE|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
gi|402550536|pdb|4FS1|A Chain A, Base Pairing Mechanism Of N2,3-Ethenoguanine With Dttp By
Human Polymerase Iota
gi|402550539|pdb|4FS2|A Chain A, Base Pairing Mechanism Of N2,3-Ethenoguanine With Dctp By
Human Polymerase Iota
gi|440690932|pdb|4EYH|B Chain B, Human Dna Polymerase Iota Incorporating Dctp Opposite N-
(deoxyguanosin-8-yl)-1-aminopyrene Lesion
gi|440690936|pdb|4EYI|B Chain B, Human Dna Polymerase Iota Incorporating Datp Opposite N-
(deoxyguanosin-8-yl)-1-aminopyrene Lesion
Length = 420
Score = 139 bits (350), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L++
Sbjct: 135 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLHI 171
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 172 --RLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 288
Query: 301 DHEPV 305
D+ PV
Sbjct: 289 DNSPV 293
>gi|62955641|ref|NP_001017834.1| DNA polymerase iota [Danio rerio]
gi|62202162|gb|AAH92781.1| Zgc:110185 [Danio rerio]
gi|182890874|gb|AAI65649.1| Zgc:110185 protein [Danio rerio]
Length = 710
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 174/350 (49%), Gaps = 45/350 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+ R+I D+DCFY QVE NP+L KPL + Q I+ NY AR GV + M
Sbjct: 35 SQRVILHFDLDCFYAQVEMIRNPALRTKPLGIQQKYI-----IVTSNYVARELGVNKLMS 89
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+A + CP++ L V+G+ D++ YR +V +L + +VER DE ++D+T+
Sbjct: 90 VTDAVEKCPQLVL-----VKGE-DLTHYREMSYKVTELLMSYCPLVERLGFDENFMDVTE 143
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R+K +++S+ + + G VY+ S++ + E+
Sbjct: 144 MVEKRIKE------TRISD--------------------LSFNGHVYNHE--SVVVDEEN 175
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSM 240
+ LA+ VI E+R A+ S AG+A NK+LAKLV G KP +Q ++LP S+ +
Sbjct: 176 IR-LAVGSVIAAEMRQAIFSTLGLTGCAGVASNKLLAKLVSGSFKPNQQTTLLPHSNAEL 234
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ + + KV +G K E ++ L + +L+ + L L F E A + +A GI
Sbjct: 235 MSSLTGLIKVPGIGYK-TREKLKALGLVNVRDLQLYPLSDLVKEFGEMNAKRVQNLACGI 293
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
D PV +S+ F ++T ++V I+EL + ER+ D
Sbjct: 294 DDSPVTPAGPPQSLSDEDSFKK---MSTLEEVLKKIEELLINLTERMHKD 340
>gi|254574961|pdb|3H40|A Chain A, Binary Complex Of Human Dna Polymerase Iota With Template
UT
Length = 389
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 1 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 55
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 56 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 109
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L++
Sbjct: 110 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLHI 146
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 147 --RLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 204
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 205 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 263
Query: 301 DHEPV 305
D+ PV
Sbjct: 264 DNSPV 268
>gi|82407825|pdb|2ALZ|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp
gi|254574964|pdb|3H4B|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Template
UT AND Incoming Datp
gi|254574967|pdb|3H4D|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Template
UT AND Incoming Dgtp
Length = 390
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 2 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 56
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 57 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L++
Sbjct: 111 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLHI 147
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 148 --RLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 205
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 206 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 264
Query: 301 DHEPV 305
D+ PV
Sbjct: 265 DNSPV 269
>gi|340714323|ref|XP_003395679.1| PREDICTED: DNA polymerase iota-like isoform 1 [Bombus terrestris]
gi|340714325|ref|XP_003395680.1| PREDICTED: DNA polymerase iota-like isoform 2 [Bombus terrestris]
Length = 575
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 205/452 (45%), Gaps = 57/452 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I ID+DCFY Q+E +P L GKPL V Q + ++ NY AR G+ + M
Sbjct: 24 RTIIHIDVDCFYAQIEMLRHPELEGKPLGVQQKSI-----VVTSNYLAREHGIKKCMSVQ 78
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA Q CPE+ L V G+ D++ YR+ +V+ +L +F+ +VER +D+ ++D+T +V
Sbjct: 79 EALQLCPELVL-----VNGE-DLTNYRHYSAKVLEILHQFTPLVERLGLDDNFMDVTSIV 132
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ M S N + + DE+ +G+V+ ++
Sbjct: 133 QKYMNS---------GNNSELNLSINMEDENP--------VGKVFGPSEEECPCGCH--A 173
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
L IA I EIR + CSAGIAHNK+LAKLV LHKP Q+++ S M +
Sbjct: 174 RLIIASKIAAEIRERIYKDLHITCSAGIAHNKLLAKLVGSLHKPNHQTLVFPCSAPMFLS 233
Query: 244 NL-SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+ S+ K+ +G K ++ T+ +L K L+ L+ A L A GID
Sbjct: 234 TIGSVSKIPGVGQKTAQLLISN-NIKTVDDLRKTPLETLEMKIGIDLARKLKDNAEGIDE 292
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCE-RLEDDLTLNKRRAQLL 361
V +SIG F + +A +V + L + E +ED R +
Sbjct: 293 TVVKPTGKRQSIGLEDGFKSVSLVA---EVESRLGALLRRLTELAMEDGRIPIAMRLTVR 349
Query: 362 TVSFTQETDGKVNSCSRSIALASYKL----------QDIVEVSMQVINKTNSAPPISDLT 411
F + T GK +R AL + L ++ ++M++ ++T D++
Sbjct: 350 KHDFNKTTSGKRE--TRQCALPKHLLPSTKSGVYDHAKMLALAMKLFHRT------VDVS 401
Query: 412 PP--LLFLGLSASKFSPLGSHP-SIQQFFKPQ 440
P L LG++ +KF S SI F + Q
Sbjct: 402 KPFHLTLLGVAFTKFEERSSGKNSITSFLRKQ 433
>gi|343415011|emb|CCD20819.1| DNA polymerase eta, putative [Trypanosoma vivax Y486]
Length = 513
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 130/476 (27%), Positives = 205/476 (43%), Gaps = 68/476 (14%)
Query: 6 IALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
IA IDMDCFY QVE +L P VVQ+ +++V+Y AR G++RH E
Sbjct: 4 IAHIDMDCFYAQVEAVRLGIDYRTVPFIVVQWQF-----VLSVSYPARRFGISRHTPLSE 58
Query: 65 AKQHCPEIELCRVPS-VRG---------------KADISKYRNAGREVIAVLSEFSNI-V 107
A + CP + + + V G K + YR A R++ VL F + V
Sbjct: 59 AIKKCPHVIISHAATCVAGDPQHRYYETPRRETHKISLEPYREASRKIFDVLGSFEGVRV 118
Query: 108 ERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVG---------FGPDNNDEDARKA 158
E+ASIDEAY+D+T+ ++ + A+Q T + PD DE
Sbjct: 119 EKASIDEAYLDVTEAAKYELEEM----AAQRRGTRLCWEDVVEPTTIVIPDRQDE----- 169
Query: 159 GVMEWL---GQVYSDT-DTSLMENT--EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIA 212
+ W G+ +S+ D SL + ED L A +V++IR + ++ CSAGIA
Sbjct: 170 -IDSWFEERGRAFSEVFDVSLHPDATEEDKVLLCAASRVVQQIRQKLYDDLRYECSAGIA 228
Query: 213 HNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQ----CS 268
HNK+LAK + +KP +Q++L V+ + + +R GG+LG+ V + C
Sbjct: 229 HNKLLAKNISSRYKPNRQTLLFSDRVASAMWDTKYQTIRGFGGRLGETVCDLCDGEELCR 288
Query: 269 TMLELEKFSLKQ-LQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLA 327
L K +L+ L + +Y R D + KSI K FP
Sbjct: 289 DAWLLSKQTLRASLPCAVDPNC---VYLRLRCYDDDEFAVGTAHKSIMATKVFPSYAVFD 345
Query: 328 TRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKL 387
++ W+ L++E+C R K + Q L V D KV +A + L
Sbjct: 346 G--EIRKWVHALSEELCSRYVSLCAKYKVKGQKLNVKL----DTKVRDHFEVVACRTLSL 399
Query: 388 QDIV------EVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPLGSHPSIQQFF 437
+IV ++MQ I T A + + + +G S+ + ++ + F
Sbjct: 400 PEIVNPSTLTSIAMQPITATMLAKSGTRINAVAMTIGSFKSQPCSVNRQATLTELF 455
>gi|51247537|pdb|1T3N|A Chain A, Structure Of The Catalytic Core Of Dna Polymerase Iota In
Complex With Dna And Dttp
gi|51247538|pdb|1T3N|B Chain B, Structure Of The Catalytic Core Of Dna Polymerase Iota In
Complex With Dna And Dttp
gi|73535911|pdb|1ZET|A Chain A, X-Ray Data Do Not Support Hoogsteen Base-Pairing During
Replication By Human Polymerase Iota
Length = 388
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 160/304 (52%), Gaps = 38/304 (12%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 1 SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMNV 55
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT++
Sbjct: 56 RDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEM 109
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V +R++ + + +LS V G VY++ +L++
Sbjct: 110 VEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLHI- 145
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSML 241
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S ++
Sbjct: 146 -RLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLI 204
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G D
Sbjct: 205 HSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGED 263
Query: 302 HEPV 305
+ PV
Sbjct: 264 NSPV 267
>gi|327277898|ref|XP_003223700.1| PREDICTED: DNA polymerase iota-like [Anolis carolinensis]
Length = 686
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 182/388 (46%), Gaps = 43/388 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII +D+DCFY QVE NP L GKPL V Q ++ NYEAR GV + M
Sbjct: 46 RIIVHLDLDCFYAQVEMICNPELKGKPLGVQQKYI-----VVTCNYEARSFGVNKLMSVK 100
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP++ L V G+ D++KYR +V A+L EF+ +VER DE ++D+T++V
Sbjct: 101 EAKEKCPDLLL-----VNGE-DLTKYREMSYKVTALLEEFTPLVERLGFDENFVDITELV 154
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+++ A S++S + G +Y+ +L
Sbjct: 155 DLKLEQWKKDAFSKISFS-----------------------GHIYNKQTVNLHNPVH--I 189
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSMLY 242
LA+ I +R A+ + AG+A NK+L+KLV G KP +Q++ LP+S ++
Sbjct: 190 RLAVGSQIAATLREAMYHRLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLLPESHQDLIL 249
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+ I KV +G K ++ L ST+ +L+ S L+ A + ++RG D
Sbjct: 250 SLDHIGKVPGIGYKTTKRLM-MLGISTVRDLQLCSTVILERELGGSAAQHIQKLSRGEDD 308
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLT 362
V +S+ F K C ++ +V ++EL + RL D K LT
Sbjct: 309 SLVTPSGPPQSLSDEDSF--KKC-SSEAEVKKKVEELLTNLLHRLYKD--GRKPHTIRLT 363
Query: 363 VSFTQETDGKVNSCSRSIALASYKLQDI 390
+ T+ N SR + S+ +Q I
Sbjct: 364 LRKFSPTNKWFNRESRQCPIPSHLIQRI 391
>gi|307104135|gb|EFN52390.1| hypothetical protein CHLNCDRAFT_138846 [Chlorella variabilis]
Length = 693
Score = 137 bits (346), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 157/339 (46%), Gaps = 33/339 (9%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
T R+I D+D Y Q E NPSL G+PL V Q I+ NY AR GVT+ M
Sbjct: 10 TGRVIIHFDVDAMYAQAEEVRNPSLRGRPLGVTQKYL-----IVTCNYPARSHGVTKLMG 64
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EA++ CP I L V G+ D++ YR A ++++AVL + E+ +DE ++D T
Sbjct: 65 VAEAQRRCPHIVL-----VSGE-DLTPYRAASKQILAVLKRY-GTAEKLGLDEIFVDATP 117
Query: 122 VVHERMKSI-----------GHIAASQLSNTFVVG---FGPDNNDEDARKAGVMEWLGQV 167
R+ ++ GH+ LS T +V P + A
Sbjct: 118 EAQRRLAALARSGCELPAWQGHV---HLSGTELVQDSRHRPMDLRAVAAGQAPAAGGAAA 174
Query: 168 YSDTDTSLMENTEDFQELA-IAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHK 226
+ ++ L I VI E RAAV S+ + SAG+A NK LAKL GLHK
Sbjct: 175 SCGAAGAGGSGGNSWEALLRIGSVIAAEARAAVRSEAGYRTSAGVACNKTLAKLCSGLHK 234
Query: 227 PQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE 286
P Q++LP + A L ++ + +G K+ ++ + +T +L + QL F
Sbjct: 235 PDDQTVLPPPEGAAFVAPLPVRALPGVGYKM-EQALTAAGLATAADLRALTRHQLMQRFG 293
Query: 287 EKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTC 325
E++ ++L+ RG D PV R KS+ F KTC
Sbjct: 294 ERSGAFLHAACRGKDPSPVQERGPPKSVTVEDSF--KTC 330
>gi|190345515|gb|EDK37413.2| hypothetical protein PGUG_01511 [Meyerozyma guilliermondii ATCC
6260]
Length = 673
Score = 137 bits (346), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 174/389 (44%), Gaps = 59/389 (15%)
Query: 5 IIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
+IAL+DM+ F+ QVE +LN S+ P+ VQ++T +IAV+Y AR G+ R
Sbjct: 43 VIALVDMNAFFAQVEQTRLNLSIDD-PVVCVQWST-----LIAVSYAARKYGINRMDNVK 96
Query: 64 EAKQHCPEIELCRVPSVRG-----------------KADISKYRNAGREVIAVLSEFSNI 106
A++ CP++ L + K + YR R++I ++ + ++
Sbjct: 97 SAREKCPDVILAHAAVFKKGNPYWSYVDGLPNQAEHKVSLDPYRRESRKIIKIIKQHCDV 156
Query: 107 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ 166
VE+AS+DE Y+DL VH+R+ + QL G D + + W G+
Sbjct: 157 VEKASVDECYMDLGREVHKRL----LLEFPQLRQ-----LGSKLPDIPPQLPESLYWQGE 207
Query: 167 VY----SDTDTSLMENTEDFQE---------------LAIAGVIVEEIRAAVLSKTQFHC 207
D + EN Q+ + I ++ +IR + + +
Sbjct: 208 TVRTEAEDAELQSRENVSSSQKPPASPPTISDWDDICVLIGAQVLYKIRKLIYDELSYTT 267
Query: 208 SAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQ- 266
S GIA NK LAKL G +KP Q+I+ +S+ N V +GGK GD V+
Sbjct: 268 SGGIARNKFLAKLAAGFNKPDNQTIIRSASIPNFLTNFQFNDVSGMGGKTGDTVLARFDT 327
Query: 267 ---CSTMLEL-EKFSLKQLQSHFEE--KTASWLYYIARGIDHEPVNARLVSKSIGCCKRF 320
++ L E ++L+ +Q + + + A +Y I RG D +P+ R KS+ K F
Sbjct: 328 PPGVNSFTHLRENYTLQDIQKEYPQDPQFAQKIYDIVRGDDKQPLRLRTDVKSMMSRKNF 387
Query: 321 PGKTCLATRQDVSHWIQELADEVCERLED 349
+ + T D+ W++ A ++ R D
Sbjct: 388 IPQRPVKTLFDIFSWLKVYAGDLHNRFID 416
>gi|389748620|gb|EIM89797.1| DNA/RNA polymerase [Stereum hirsutum FP-91666 SS1]
Length = 700
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 178/393 (45%), Gaps = 67/393 (17%)
Query: 4 RIIALIDMDCFYCQVECK---LNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IAL D D FY E + ++P KP V Q++ +IAVNY AR G+TR
Sbjct: 54 RVIALCDSDAFYAACERRRLGIDPE---KPFVVRQWD-----ALIAVNYPARKFGITRMA 105
Query: 61 RGDEAKQHCPEIELCRV---------PSVRGKAD-------ISKYRNAGREVIAVLSEF- 103
+ +A + CPE+ + V P K D + YR ++I + E
Sbjct: 106 KVADALKKCPELVVVHVATYKEGDPEPGYWDKPDTRTHKVSLDHYRRESAKIITIFKEGL 165
Query: 104 -SNIVERASIDEAYIDLTDVVHE-RMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161
+E+ASIDEA+ID + V + ++ H+A V PD D +
Sbjct: 166 PEGEIEKASIDEAFIDFSRPVRKILLERYPHLAT-------VPPDAPDGLDTVLPPPPPI 218
Query: 162 EW-----LGQVYS-----------DTDTSLMENTEDFQ----------ELAIAGVIVEEI 195
W + +Y +TD + ED L+IA ++++I
Sbjct: 219 TWDSKSNIIPIYPSKSSETVVDAPETDREAESHKEDKDVEPAPTWHDVALSIAAELMDKI 278
Query: 196 RAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGG 255
R V + + SAGIA NK LAKL K QS+L +++ + +K+R LGG
Sbjct: 279 RGDVREQLGYTTSAGIARNKFLAKLTASYRKYDSQSVLRNAAIPNYLQPMQFQKIRFLGG 338
Query: 256 KLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARL-VSKSI 314
KLG + + ST+ +L SL+++Q F E++ W+Y I RGID V + ++KS+
Sbjct: 339 KLGKALADEYDVSTVGDLLTISLEEMQRKFGEESI-WVYEILRGIDRSEVKEKPSMAKSM 397
Query: 315 GCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
K P + T + HW++ LA E+ RL
Sbjct: 398 MASKNLP--RPITTVAEGPHWLRVLAAELALRL 428
>gi|146085849|ref|XP_001465374.1| putative DNA polymerase eta [Leishmania infantum JPCM5]
gi|134069472|emb|CAM67795.1| putative DNA polymerase eta [Leishmania infantum JPCM5]
Length = 760
Score = 137 bits (345), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 121/449 (26%), Positives = 187/449 (41%), Gaps = 103/449 (22%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R IA IDMDCFY QVE +L PLA+ Q+ G +IAVNY AR +GV R
Sbjct: 15 RCIAHIDMDCFYAQVEAVRLGVDCRVTPLALSQW-----GSLIAVNYPARARGVRRFSNV 69
Query: 63 DEAKQHCPEIELCRVPSVRGKADISK----------------YRNAGREVIAVLSEFSNI 106
EA+ CP + + PS R +S+ YR+A R+V ++L+ +
Sbjct: 70 SEAQALCPGLIVALSPSYRMGESVSQYHPHPVQDSYKISLEPYRHASRQVFSILAATPGV 129
Query: 107 -VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW-- 163
VE+ S+DEAY+D+T+ + + + AA + P + R+A + W
Sbjct: 130 QVEKGSVDEAYVDVTEAARQELAEVRAAAAGASLDPLADVMEPSTRLIEDRRAEMEAWFS 189
Query: 164 -----LGQVYSDTDTSL--------MENTEDF-------------QELAIAGVIVEEIRA 197
L V+ + +L +E + F L A +V +R
Sbjct: 190 ARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGVDDAAYAERCLLLCAASRVVHRLRQ 249
Query: 198 AVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSMLYANLSIKKVRHLGGK 256
+ ++ + CSAGIAHN+VLAK + HKP +Q+ +LP S S L+ L + +R GGK
Sbjct: 250 RIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRSASALF-ELPLSGLRGFGGK 308
Query: 257 LGDEVVETLQCSTMLELEK----------------------------------------- 275
LG V + C + E +
Sbjct: 309 LGAAV--SAVCGGVTECREAWLVPLAQLCKLDGTCDVGDGADAEGDREGRKRRPIAGKRG 366
Query: 276 -----FSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQ 330
F + LQ T+ +++Y RG+ + + R +SK+I K F G+ +
Sbjct: 367 RTASPFLERDLQGLVAHTTSQYVFYRLRGLAEDTILNRPLSKTIIASKNF-GRITTSVEM 425
Query: 331 DVSHWIQELADEVCERLEDDLTLNKRRAQ 359
V W+ L E+C R E+ L R +
Sbjct: 426 -VRRWVIVLTSELCSRYEEFTALYHIRGR 453
>gi|348535636|ref|XP_003455305.1| PREDICTED: DNA polymerase iota-like [Oreochromis niloticus]
Length = 716
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 166/348 (47%), Gaps = 43/348 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I D+DCFY QVE NP+L PL + Q I+ NY AR +GV + M
Sbjct: 44 RVILHFDLDCFYAQVEMIRNPALREVPLGIQQKYI-----IVTCNYVARERGVNKLMSVT 98
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CPE+ L V+G+ D++ YR ++ +L + +VER DE ++D+T++V
Sbjct: 99 DAKEKCPELVL-----VKGE-DLTHYREMSYKMTELLMSYCPLVERLGFDENFMDVTEMV 152
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+R+ A + S F + G VY+ + ++
Sbjct: 153 EQRL------AQTVKSEDF-------------------SFKGHVYNHPSADV--KASNYP 185
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
LA+ I E+R AV SK AGIA NK+LAKLV G KP +Q+ L ++S +
Sbjct: 186 RLALGSHIAGELREAVHSKLGLTGCAGIATNKLLAKLVSGTFKPNQQTTLLPENISDIMG 245
Query: 244 NL-SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L S++KV +G + ++ L ++ +L+ L L F TA L +A G+D
Sbjct: 246 CLGSVRKVPGVGHQTAKR-LQALGLVSVKDLQLCPLNDLVKEFGSPTAQRLKNLALGVDD 304
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
PV +S+ F +++ ++VS Q+L + ER+ D
Sbjct: 305 SPVTCTGAPQSLSDEDSFKK---MSSTKEVSEKTQQLLSSLVERMHKD 349
>gi|157114087|ref|XP_001657975.1| DNA polymerase iota [Aedes aegypti]
gi|108877445|gb|EAT41670.1| AAEL006715-PA [Aedes aegypti]
Length = 654
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 124/445 (27%), Positives = 206/445 (46%), Gaps = 69/445 (15%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQ-YNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DMD FY QVE L+PSL KP+ V Q +N ++ NY AR G+ + M
Sbjct: 15 RVIIHVDMDYFYAQVEEILDPSLKDKPVGVKQRFN------VVTSNYIAREYGIKKMMLI 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+EA + CP++ L V G+ D++KY+ ++ ++ +F+ VE+ +DE Y+D+T
Sbjct: 69 NEATKLCPDLVL-----VNGE-DLTKYKQMSAKIHEIMHKFTPNVEKLGLDENYLDVTRE 122
Query: 123 VHERMKSIGHIAASQLSNTFVVGF-GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
++++++ + QL N V GF P D + V D
Sbjct: 123 INDQLEQ--KLNLEQLQN--VEGFIYPPKEDSNLSDQEVFRRACSCGCD----------- 167
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ L +A + ++IR + + C AGIAHNK+LAKLV G+HK KQ++ LP + S
Sbjct: 168 -RRLILASHMAKQIRDRIFCELGMKCCAGIAHNKLLAKLVGGVHKQDKQTVLLPNCAASF 226
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ + ++K + +G K +++E T+ EL++ L QL + +S L ++ G
Sbjct: 227 VRSLGTVKSLTGIGDKTA-QILEECGVRTVQELQEAPLHQLSKRLGYEQSSKLKEMSFGK 285
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD--------LT 352
D PV KS+G P ++ R D + L + + + DD +T
Sbjct: 286 DDTPVKQTGKPKSVGLEDSCPA---ISIRADAEDKFRHLLVRLVKNIADDGRIPIAIKVT 342
Query: 353 LNKR-----------RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKT 401
+ K + + S+ + DGK + LA I+ V M+V +
Sbjct: 343 VRKHDSVKKTSHRECKQDKILPSYFRHKDGK-------LVLADGAQDKILAVVMKVFER- 394
Query: 402 NSAPPISDLTPP--LLFLGLSASKF 424
+ DL P + LGLS KF
Sbjct: 395 -----MVDLRQPFNITLLGLSFFKF 414
>gi|395830769|ref|XP_003788490.1| PREDICTED: DNA polymerase iota isoform 1 [Otolemur garnettii]
Length = 737
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 158/306 (51%), Gaps = 38/306 (12%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
+SR+IA +D+DCFY QVE NP L KPL V Q + ++ NYEAR GV + M
Sbjct: 47 FSSRVIAHLDLDCFYAQVEMISNPELRDKPLGVQQKFS-----VVTCNYEARKFGVKKCM 101
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
EAK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT
Sbjct: 102 PVREAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLKEFSPVVERLGFDENFVDLT 155
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
++V +R++ + S +S + G VY++ +L +
Sbjct: 156 EMVEKRLQQLQSDELSAVSVS-----------------------GHVYNNQCINLDDILH 192
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVS 239
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S
Sbjct: 193 --VRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGIFKPNQQTVLLPESCQD 250
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
++++ IK++ +G K +E L +++ +L+ S K L A + ++ G
Sbjct: 251 LIHSLNHIKEIPGIGYKTTKR-LEALGINSVHDLQTCSSKILVKELGMSVAHHIQKLSFG 309
Query: 300 IDHEPV 305
D+ PV
Sbjct: 310 EDNSPV 315
>gi|328780415|ref|XP_003249798.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase iota [Apis
mellifera]
Length = 564
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 129/452 (28%), Positives = 207/452 (45%), Gaps = 57/452 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I ID+DCFY QVE +P L KPL V Q N ++ NY AR G+ + M
Sbjct: 14 RTIIHIDVDCFYAQVEMLRHPELENKPLGVQQKNM-----VVTSNYIAREYGIKKCMSVQ 68
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA + CP + L V G+ D++ YR+ +++ +L +F+ +VER D+ ++D+T +V
Sbjct: 69 EALRLCPGLAL-----VNGE-DLTNYRHFSTKILEILHQFTPLVERLGFDDNFMDVTSIV 122
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ M S N + DE+ +G+++ ++
Sbjct: 123 QKYMNS---------GNNSELNINISMEDENP--------VGEIFGASEEECPCGCH--A 163
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
L IA I EIR + CSAGIAHNK+LAKLV LHKP +Q+++ S ML +
Sbjct: 164 RLIIASKIAAEIRERIYKDLHVTCSAGIAHNKLLAKLVGSLHKPNQQTLIFPCSAPMLLS 223
Query: 244 NL-SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
N+ S+ K+ +G K +++ + T+ +L K SL+ L+ A L A GID
Sbjct: 224 NIGSVSKIPGVGQK-TTQLLMSNNIKTIDDLRKTSLETLEMKIGIDLARKLKDNAEGIDE 282
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCE-RLEDDLTLNKRRAQLL 361
V +SIG F + +A +V + L + E +ED R +
Sbjct: 283 TVVKPTGKKQSIGLEDGFKSVSLVA---EVESRLGALLRRLTELAMEDGRIPVAMRLTVR 339
Query: 362 TVSFTQETDGKVNSCSRSIALASYKL----------QDIVEVSMQVINKTNSAPPISDLT 411
F + + GK +R AL + L ++ ++M++ ++T D++
Sbjct: 340 KHDFNKSSSGKRE--TRQCALPKHLLPSSKSGVYDHAKMLTLAMKLFHRT------VDVS 391
Query: 412 PP--LLFLGLSASKFSPLGSHP-SIQQFFKPQ 440
P L LG++ +KF S SI F + Q
Sbjct: 392 KPFHLTLLGVAFTKFEERSSGKNSITSFLRKQ 423
>gi|350400596|ref|XP_003485892.1| PREDICTED: DNA polymerase iota-like [Bombus impatiens]
Length = 565
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 129/452 (28%), Positives = 204/452 (45%), Gaps = 57/452 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I ID+DCFY Q+E +P L GKPL V Q + ++ NY AR G+ + M
Sbjct: 14 RTIIHIDVDCFYAQIEMLRHPELQGKPLGVQQKSI-----VVTSNYLAREHGIKKCMSVQ 68
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA Q CP + L V G+ D++ YR+ +V+ +L +F+ +VER +D+ ++D+T +V
Sbjct: 69 EALQLCPGLVL-----VNGE-DLTNYRHYSAKVLEILHQFTPLVERLGLDDNFMDVTSIV 122
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ M S N + + DE+ +G+V+ ++
Sbjct: 123 QKYMNS---------GNNSELNLSINMEDENP--------VGKVFGTSEEECPCGCH--A 163
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
L IA I EIR + CSAGIAHNK+LAKLV LHKP Q+++ S M +
Sbjct: 164 RLIIASKIAAEIRKRIYKDLHITCSAGIAHNKLLAKLVGSLHKPNHQTLVFPCSAPMFLS 223
Query: 244 NL-SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+ S+ K+ +G K ++ T+ +L K L+ L+ A L A GID
Sbjct: 224 TIGSVSKIPGVGQKTAQLLISN-NIKTVDDLRKTPLETLEMKIGIDLARKLKDNAEGIDE 282
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCE-RLEDDLTLNKRRAQLL 361
V +SIG F + +A +V + L + E +ED R +
Sbjct: 283 TVVKPTGKRQSIGLEDGFKSVSLVA---EVESRLGALLRRLTELAMEDGRIPIAMRLTVR 339
Query: 362 TVSFTQETDGKVNSCSRSIALASYKL----------QDIVEVSMQVINKTNSAPPISDLT 411
F + T GK +R AL + L ++ ++M++ ++T D++
Sbjct: 340 KHDFNKPTSGKRE--TRQCALPKHLLPSTKSGVYDHAKMLALAMKLFHRT------VDVS 391
Query: 412 PP--LLFLGLSASKFSPLGSHP-SIQQFFKPQ 440
P L LG++ +KF S SI F + Q
Sbjct: 392 KPFHLTLLGVAFTKFEERSSGKNSITSFLRKQ 423
>gi|213513962|ref|NP_001133709.1| DNA polymerase iota [Salmo salar]
gi|209155032|gb|ACI33748.1| DNA polymerase iota [Salmo salar]
Length = 757
Score = 136 bits (343), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 173/375 (46%), Gaps = 53/375 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I D+DCFY QVE NP+L PL + Q I+ NY AR GVT+ M
Sbjct: 45 RVILHFDLDCFYAQVEMIRNPALRNVPLGIQQKYI-----IVTCNYVARDLGVTKLMLVT 99
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L V+G+ D++ YR +V +L F +VER DE ++D+T++V
Sbjct: 100 DAKEKCPQLVL-----VKGE-DLTHYRETSYKVTELLMSFCPLVERLGFDENFMDITEMV 153
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYS--DTDTSLMENTED 181
RM E ++ + G VYS +D +M +
Sbjct: 154 ERRM-------------------------EQTPESAHYSYEGHVYSLDTSDAKVMVHPL- 187
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
LA+ I E+RA + SK AGIA +K+LAKLV G KP +Q+ L SV +
Sbjct: 188 ---LAVGSHIAAELRAEIHSKLGLTGCAGIATSKLLAKLVAGTFKPNQQTTLLPESVKDI 244
Query: 242 YANL-SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+L ++KV +G + ++ L + +L+ F L L F TA L +A GI
Sbjct: 245 MGSLNGLRKVPGVGHQTAKR-LQALGLVGVQDLQLFPLADLVREFGVSTAQRLQNLALGI 303
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD------LTLN 354
D PV +S+ F +++ +V +++L + +R+ D L L
Sbjct: 304 DDTPVTPTGAPQSLSDEDSFKK---MSSTNEVWQKVKDLLSSLLDRMHKDGRQPFTLRLT 360
Query: 355 KRRAQLLTVSFTQET 369
RR F++E+
Sbjct: 361 IRRYSATNKWFSRES 375
>gi|384945076|gb|AFI36143.1| DNA polymerase iota [Macaca mulatta]
Length = 737
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 172/348 (49%), Gaps = 43/348 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 49 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 103
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 104 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 157
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L +
Sbjct: 158 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLHDILH- 193
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L I I E+R A+ + AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 194 -IRLLIGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 252
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ + IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 253 ILSLNHIKEIPGIGYKTA-KCLEALGINSVHDLQTFSSKILEKELGISLAQRIQKLSFGE 311
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTC---LATRQDVSHWIQELADEVCE 345
D+ V +S C+ K C + + + + L + VC+
Sbjct: 312 DNSHVIPSGPPQSF--CEEDSFKKCSSEVEAKNKIEELLASLLNRVCQ 357
>gi|334325369|ref|XP_001362838.2| PREDICTED: DNA polymerase iota [Monodelphis domestica]
Length = 738
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 154/303 (50%), Gaps = 38/303 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I +D+DCFY QVE +P L GKPL V Q ++ NYEAR GV + M
Sbjct: 50 RVIVHVDLDCFYAQVEMISHPELKGKPLGVQQKYL-----VVTCNYEARKLGVKKLMSVR 104
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++D+T V
Sbjct: 105 DAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDVTQTV 158
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+R++ + + S V G VY++ +L N
Sbjct: 159 EKRLQ---QLQSDDYSGVVVSG--------------------HVYNNQSVNL--NDILHV 193
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-PQSSVSMLY 242
L I I EE+R A+ ++ AG+A NK+L+KLV G KP +Q++L P+S ++
Sbjct: 194 RLLIGSQIAEEMREAIFNQLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQDLID 253
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+ IK++ +G K +E+L +++ +L+ FS K L+ A + ++ G D+
Sbjct: 254 SLDHIKQMPGIGFKTTKR-LESLGINSVHDLQTFSPKILEKELGISVAQRIQKLSFGEDN 312
Query: 303 EPV 305
PV
Sbjct: 313 SPV 315
>gi|449282938|gb|EMC89663.1| DNA polymerase iota, partial [Columba livia]
Length = 594
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 136/254 (53%), Gaps = 37/254 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I +D+DCFY QVE NP L KPL V Q N ++ NYEAR GV + M
Sbjct: 5 RVIVHMDLDCFYAQVEMIRNPELRDKPLGVQQKNL-----VVTSNYEARKLGVQKLMFVK 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L V G+ D++ YR +V +L EF +VER +DE ++D+T++V
Sbjct: 60 DAKEKCPQLVL-----VNGE-DLTAYREMSYKVTELLGEFCPLVERLGLDENFVDVTEMV 113
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
ER+K + A S++ + G VY++ +L ++T +
Sbjct: 114 EERLKQLQQSACSRVCVS-----------------------GHVYNNQAINL-DDTRHVR 149
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSMLY 242
L + I EE+R AV ++ AG+A NK+L+KLV G KP +Q++ LP+S ++
Sbjct: 150 -LILGSQIAEELREAVYTRLGLTGCAGVAANKLLSKLVSGTFKPNQQTVLLPESRPDLIR 208
Query: 243 ANLSIKKVRHLGGK 256
+ I+KV +G K
Sbjct: 209 SLDRIQKVPGIGAK 222
>gi|150863740|ref|XP_001382310.2| DNA polymerase eta subunit [Scheffersomyces stipitis CBS 6054]
gi|149384996|gb|ABN64281.2| DNA polymerase eta subunit [Scheffersomyces stipitis CBS 6054]
Length = 733
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 182/386 (47%), Gaps = 56/386 (14%)
Query: 5 IIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
+I+LID++ F+ QVE +L + P+ VQ++T +IAV+Y AR G+ R
Sbjct: 45 VISLIDLNAFFAQVEQLRLGLPVE-TPVVCVQWST-----LIAVSYAARKFGIGRLDTLQ 98
Query: 64 EAKQHCPEIELCRVPSVRGKAD------------------ISKYRNAGREVIAVLSEFSN 105
AKQ CP + +C +V K + + YR R+++ + + +
Sbjct: 99 SAKQKCPNL-VCAHAAVFKKGESHWAYTKGLPNQATHKVSLDPYRRESRKIVKIFQQHCD 157
Query: 106 IVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG 165
+VE+AS+DE+Y+DL +V++++ S+ + A + ++ PD E+ + GV+
Sbjct: 158 LVEKASVDESYLDLGRLVYKKLLSLFPLLAEGQDSDYMPSL-PDTLPEELQFRGVV---- 212
Query: 166 QVYSDTDTSLMEN------TEDFQE------------LAIAGVIVEEIRAAVLSKTQFHC 207
+ S + +L++N ++ F E + I +IV +IR A+ + +
Sbjct: 213 -IKSTEEENLIQNNTIMSLSQQFPEGPPTIGDWDDVCMLIGSMIVLDIRKALYDEMGYTT 271
Query: 208 SAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC 267
SAGIA NK +AKL G KP Q ++ S N + V +GGK GD V++ L+
Sbjct: 272 SAGIASNKQVAKLAGGFKKPDNQCVIRNRSTYSFLNNFELNDVTSMGGKTGDFVLQKLRV 331
Query: 268 ----STMLELEKFSLKQLQSHFEEKT--ASWLYYIARGIDHEPVNARLVSKSIGCCKRFP 321
E F+L+ ++ F + A +Y I RG + R+ KS+ K F
Sbjct: 332 PPDKGISYIRENFTLEAIEEEFNDDIPLAKKIYEIVRGNHRRELVNRMDVKSMMSRKNFL 391
Query: 322 GKTCLATRQDVSHWIQELADEVCERL 347
K + T D WI+ A ++ R+
Sbjct: 392 AKHPVETLSDADSWIKVFAGDLYNRM 417
>gi|383415497|gb|AFH30962.1| DNA polymerase iota [Macaca mulatta]
Length = 737
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 157/305 (51%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 49 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 103
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 104 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 157
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L +
Sbjct: 158 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLHDILH- 193
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L I I E+R A+ + AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 194 -IRLLIGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 252
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ + IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 253 ILSLNHIKEIPGIGYKTA-KCLEALGINSVHDLQTFSSKILEKELGISLAQRIQKLSFGE 311
Query: 301 DHEPV 305
D+ V
Sbjct: 312 DNSHV 316
>gi|320163305|gb|EFW40204.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 624
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 143/483 (29%), Positives = 218/483 (45%), Gaps = 88/483 (18%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++A ID+D F+ Q E P L GKP+A+ Q+ IIA++YEAR G+ +H +
Sbjct: 8 RVVACIDVDAFFIQAEILRRPWLRGKPIALQQHQD-----IIALSYEARALGIAKHTKPG 62
Query: 64 EAKQHCPEIELCRVPSVR--GKADISKYRNAGREVIAVLSEFSN-------IVERASIDE 114
+ PE+ + VP +R GKA YR V V+ F+ VE ASIDE
Sbjct: 63 VVRATHPEVTIVHVP-LRGLGKATYRDYRLLSICVFDVVRSFATAVPSAPVTVEVASIDE 121
Query: 115 AYIDLTDVV-HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDT 173
Y+DLT H +++I A + SN ++ +D + GV+ S +
Sbjct: 122 GYLDLTARAKHLMVQTI----AQEASNERLL-HRQRYDDGEQVHGGVLP------SGGPS 170
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
+L+E V++ E+RAA+LS CSAGIAHNK+LAKL L KP Q ++
Sbjct: 171 NLLEA---------GAVLIAELRAAILSVLSLECSAGIAHNKLLAKLATRLAKPNGQVVV 221
Query: 234 PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHF--EEKTAS 291
S+ +L I GGK+ D ++T+ T ++ + L S F T +
Sbjct: 222 VNSNPLLLLQEAGIPS---FGGKVTD-TLKTVGIETGGDVLRAPPSFLASLFGASSPTPA 277
Query: 292 WLYYIARGIDHEPVNARLVSKSIG--------CCKRFPGKTC-----LATRQDVSHWIQE 338
L RG D V R + KSI RF G + +D+S +I+E
Sbjct: 278 SLLRACRGEDDSEVVDRGLIKSISSQMALTAWARPRFGGGPTATIEPVGVSEDISLFIRE 337
Query: 339 LADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQ--DIVEVSMQ 396
LA+++ ER +D ++ R LTV++ + ++ SRS + LQ ++VE+S
Sbjct: 338 LAEDLAERTLEDQIVHSRHPSTLTVAYRVD-----DTWSRSRTF-PFPLQAMNMVEIS-- 389
Query: 397 VINKTNSAPPISDLTPPLLFLGLSASKFSPLGSHPSIQQFFKPQDHPEPMTSEHSSLPEQ 456
+S+LT P+ P++ K P P TS S PE
Sbjct: 390 ----------VSELT------------LGPVVLRPALSSAAKTARRPLP-TSPTSEAPET 426
Query: 457 STN 459
+ N
Sbjct: 427 TAN 429
>gi|355755039|gb|EHH58906.1| DNA polymerase iota [Macaca fascicularis]
Length = 738
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 157/305 (51%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 49 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 103
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 104 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 157
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L +
Sbjct: 158 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLHDILH- 193
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L I I E+R A+ + AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 194 -IRLLIGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 252
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ + IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 253 ILSLNHIKEIPGIGYKTA-KCLEALGINSVHDLQTFSSKILEKELGISLAQCIQKLSFGE 311
Query: 301 DHEPV 305
D+ V
Sbjct: 312 DNSHV 316
>gi|345305688|ref|XP_001509638.2| PREDICTED: DNA polymerase iota-like [Ornithorhynchus anatinus]
Length = 831
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 171/350 (48%), Gaps = 45/350 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ +D+DCFY QVE NP L GKPL V Q ++ NY+AR GV + M
Sbjct: 143 RVVVHLDLDCFYAQVEMIHNPELKGKPLGVQQKYL-----VVTCNYDARKLGVKKLMSIR 197
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L V G+ D+++YR +V +L EF +VER DE ++D+T++V
Sbjct: 198 DAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFCPVVERLGFDENFVDITEMV 251
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+RM+ + P N+ + +G VY++ N D
Sbjct: 252 EKRMQQL-----------------PSND------CSTVSVVGHVYNNQTV----NPNDIL 284
Query: 184 --ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-PQSSVSM 240
L I I E+R A+ S+ AG+A NK+L+KLV G KP +Q++L P+S +
Sbjct: 285 HVRLLIGSQIAAEMREAIHSRLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQDL 344
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ + IK++ +G K +E+L S++ +L+ FS L+ A + ++ G
Sbjct: 345 ISSLDHIKQMPGIGFKTTKR-LESLGVSSVHDLQTFSPDILEKELGISVAQRIQKLSFGE 403
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
D+ PV +S + + C +T D I+EL + ER+ D
Sbjct: 404 DNSPVTPSGPPQSFS--EEDSIRKC-STEVDAKKKIEELLTNLLERVYKD 450
>gi|380025132|ref|XP_003696333.1| PREDICTED: DNA polymerase iota-like [Apis florea]
Length = 566
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 128/452 (28%), Positives = 206/452 (45%), Gaps = 57/452 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I ID+DCFY Q+E +P L KPL V Q N ++ NY AR G+ + M
Sbjct: 14 RTIIHIDVDCFYAQIEMLRHPELKSKPLGVQQKNM-----VVTSNYIAREYGIKKCMSVQ 68
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA + CP + L V G+ D++ YR+ +++ +L +F+ +VER D+ ++D+T +V
Sbjct: 69 EALRLCPGLAL-----VNGE-DLTNYRHFSAKILEILHQFTPLVERLGFDDNFMDVTSIV 122
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ M S N + DE+ +G+++ ++
Sbjct: 123 QKYMNS---------GNNSELNINISMEDENP--------VGEIFGTSEEECPCGCH--A 163
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
L IA I EIR + CSAGIAHNK+LAKLV LHKP +Q+++ S ML +
Sbjct: 164 RLIIASKIAAEIRERIYKDLHVTCSAGIAHNKLLAKLVGSLHKPNQQTLIFPCSAPMLLS 223
Query: 244 NL-SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
N+ SI K+ +G K +++ + T+ +L K L+ L+ A L A GID
Sbjct: 224 NIGSISKIPGVGQK-TTQLLMSNNIKTIDDLRKTPLETLEMKIGIDLARKLKDNAEGIDE 282
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCE-RLEDDLTLNKRRAQLL 361
V +SIG F + +A +V + L + E +ED R +
Sbjct: 283 TVVKPTGKKQSIGLEDGFKSVSLVA---EVESRLGALLRRLTELAMEDGRIPVAMRLTVR 339
Query: 362 TVSFTQETDGKVNSCSRSIALASYKL----------QDIVEVSMQVINKTNSAPPISDLT 411
F + + GK +R AL + L ++ ++M++ ++T D++
Sbjct: 340 KHDFNKSSSGKRE--TRQCALPKHLLPSSKSGVYDHAKMLTLAMKLFHRT------VDVS 391
Query: 412 PP--LLFLGLSASKFSPLGSHP-SIQQFFKPQ 440
P L LG++ +KF S SI F + Q
Sbjct: 392 KPFHLTLLGVAFTKFEERSSGKNSITSFLRKQ 423
>gi|440795136|gb|ELR16272.1| ImpB/MucB/SamB family protein [Acanthamoeba castellanii str. Neff]
Length = 590
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/399 (30%), Positives = 179/399 (44%), Gaps = 61/399 (15%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R++ +D+DCF+ QVE +P L G +AV Q+N II+ +Y AR +GV +HM
Sbjct: 11 GRVVLHLDLDCFFVQVETLKDPRLAGHAVAVQQHND-----IISADYAARRRGVRKHMTP 65
Query: 63 DEAKQHCPEIELCRVPSVRGKADIS--KYRNAGREVIAVL---------SEFSNI----- 106
EA CP+++L V G + ++ Y+ A V +L + S +
Sbjct: 66 AEALALCPDLKLVHVRRTEGTSKVTYEDYQKASAGVQTLLQNTIASLQSAAASGVNSKRK 125
Query: 107 -------VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAG 159
VE+ASID+ Y+D+T +V A+QL ++ ND D +
Sbjct: 126 TEKAPPEVEKASIDDFYVDVTPLV-----------AAQLERGLLI------NDLDMPASQ 168
Query: 160 VM----EWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 215
+ EW G V S T +L I +R AV +K SAG+A NK
Sbjct: 169 MASQSSEWPGAVEGPGLVSAHILTAQEVQLREGARIAASLREAVHTKCGLRVSAGVAQNK 228
Query: 216 VLAKLVCGLHKPQKQ-SILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELE 274
+LAKL KP Q ++LP S SML A K+ LG KLG E L + +
Sbjct: 229 LLAKLASSASKPDGQTTVLPGSVPSML-ARHPPSKIPQLGVKLGKEKRGVLLAAPWTDRV 287
Query: 275 KF--------SLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCL 326
K L +L+ F + A WL+ + +GID PV + KS+ T
Sbjct: 288 KVISDLASASLLPELRLAFGDDKAEWLHRVGQGIDDTPVKDKGPPKSLMSSMSLTSITND 347
Query: 327 ATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSF 365
A + ++ LADE+C+RL++D KR+ + SF
Sbjct: 348 AYQ--FKKILRYLADELCKRLKEDELRWKRKPRTFNFSF 384
>gi|195999238|ref|XP_002109487.1| hypothetical protein TRIADDRAFT_2325 [Trichoplax adhaerens]
gi|190587611|gb|EDV27653.1| hypothetical protein TRIADDRAFT_2325, partial [Trichoplax
adhaerens]
Length = 386
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 172/353 (48%), Gaps = 53/353 (15%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +D+DCFY QVE N SL KP+ + Q + I+ NY AR +GV + +
Sbjct: 3 RTIIHLDIDCFYAQVEMAKNSSLRNKPVGIRQKHI-----IVTSNYPARERGVGKLIPLT 57
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A + CP++ + + G+ D+++YR +V L +FS V R DE YID+T++V
Sbjct: 58 KALEKCPDLIV-----INGE-DLTEYREVSFKVTDYLKKFSTKVHRLGFDENYIDVTELV 111
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
R+ +Q VG+ N++ +A D + L
Sbjct: 112 QCRL--------NQFQGRLFVGYLYQNSNTVKAQA----------CDCNCRL-------- 145
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSMLY 242
+ I I E+R + + S GIAHNK+L+K+V GLHKP Q +I P+ ++ +L+
Sbjct: 146 RMIIGSQIAAEMRQGLWNVFSLTSSGGIAHNKMLSKIVSGLHKPNLQTAIYPEDTLDLLH 205
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+ L ++K+ +G ++ ++++ +T+ EL L L++HF A L+ +GID
Sbjct: 206 S-LELRKIAGIGSATNNK-LQSVGITTVKELSTLPLAVLKTHFPTPQACTLFQWCKGIDD 263
Query: 303 EPVNARLVSKSIG-------CCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
V A KSIG CC T +A+++ +S I+ L + + E
Sbjct: 264 SDVVAATKPKSIGVEDSFSRCC------TMIASKKRISDLIRHLLSRLVDGCE 310
>gi|197244663|dbj|BAG68958.1| DNA polymerase eta [Coprinopsis cinerea]
Length = 641
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 174/398 (43%), Gaps = 72/398 (18%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L D D FY E PL V+Q+++ +IAVNY AR G++R +
Sbjct: 45 RVVGLCDSDAFYAACEMVRLGVDKDTPLVVLQWDS-----LIAVNYPARKYGISRMDKKK 99
Query: 64 EAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVLSEF--SN 105
+A + CP +++ V + + K + YR ++ A+ E
Sbjct: 100 DALKRCPHLKVVHVATYKEGEKEPGYWDNVDTNTHKVSLDYYRRESMKIAALFRELLPGC 159
Query: 106 IVERASIDEAYIDLT----DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161
VE+ASIDEA+ID T +V+ +R + + P+ D +
Sbjct: 160 EVEKASIDEAFIDFTKPVREVLLQRYPYLAQVPPD----------APNGVDTPLPPPPPI 209
Query: 162 EWLG------------QVYSDTDTSLMENTED------FQE------------LAIAGVI 191
W G + TS + E+ Q+ L+IA +
Sbjct: 210 SWYGTGDLIPLTTGPTEGQDQPSTSKQQPAEEAVHDEGLQDGEDANTTWHDVALSIAAGM 269
Query: 192 VEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVR 251
V + R VL + + SAG+A NK LAKL KP Q+IL +++ ++ +K+R
Sbjct: 270 VMKARKGVLEQLGYSTSAGLARNKFLAKLAASYRKPFGQNILRNAAIPNYLIPMAFQKIR 329
Query: 252 HLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR--L 309
LGGKLG + + +T+ +L SL ++Q+ F E + W+Y I RGID V +
Sbjct: 330 FLGGKLGRALAQEYDAATVGDLLSISLDEMQNKFGEDSI-WVYEILRGIDRSEVKDKGTT 388
Query: 310 VSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
++KS+ K P A+ + HWI+ LA E+ RL
Sbjct: 389 LTKSMLASKNLPKPITAAS--EGYHWIRVLAAELALRL 424
>gi|146419760|ref|XP_001485840.1| hypothetical protein PGUG_01511 [Meyerozyma guilliermondii ATCC
6260]
Length = 673
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 173/389 (44%), Gaps = 59/389 (15%)
Query: 5 IIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
+IAL+DM+ F+ QVE +LN S+ P+ VQ+ T +IAV+Y AR G+ R
Sbjct: 43 VIALVDMNAFFAQVEQTRLNLSIDD-PVVCVQWLT-----LIAVSYAARKYGINRMDNVK 96
Query: 64 EAKQHCPEIELCRVPSVRG-----------------KADISKYRNAGREVIAVLSEFSNI 106
A++ CP++ L + K + YR R++I ++ + ++
Sbjct: 97 SAREKCPDVILAHAAVFKKGNPYWSYVDGLPNQAEHKVSLDPYRRESRKIIKIIKQHCDV 156
Query: 107 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ 166
VE+AS+DE Y+DL VH+R+ + QL G D + + W G+
Sbjct: 157 VEKASVDECYMDLGREVHKRL----LLEFPQLRQ-----LGLKLPDIPPQLPESLYWQGE 207
Query: 167 VY----SDTDTSLMENTEDFQE---------------LAIAGVIVEEIRAAVLSKTQFHC 207
D + L EN Q+ + I ++ +IR + + +
Sbjct: 208 TVRTEAEDAELQLRENVSSSQKPPASPPTISDWDDICVLIGAQVLYKIRKLIYDELSYTT 267
Query: 208 SAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQ- 266
S GIA NK LAKL G +KP Q+I+ + + N V +GGK GD V+
Sbjct: 268 SGGIARNKFLAKLAAGFNKPDNQTIIRLALIPNFLTNFQFNDVSGMGGKTGDTVLARFDT 327
Query: 267 ---CSTMLEL-EKFSLKQLQSHFEE--KTASWLYYIARGIDHEPVNARLVSKSIGCCKRF 320
++ L E ++L+ +Q + + + A +Y I RG D +P+ R KS+ K F
Sbjct: 328 PPGVNSFTHLRENYTLQDIQKEYPQDPQFAQKIYDIVRGDDKQPLRLRTDVKSMMSRKNF 387
Query: 321 PGKTCLATRQDVSHWIQELADEVCERLED 349
+ + T D+ W++ A ++ R D
Sbjct: 388 IPQRPVKTLFDIFSWLKVYAGDLHNRFID 416
>gi|392594879|gb|EIW84203.1| DNA polymerase eta [Coniophora puteana RWD-64-598 SS2]
Length = 623
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 176/382 (46%), Gaps = 58/382 (15%)
Query: 4 RIIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R++ L D D FY E +LN S PL V Q+ + +IAV+Y AR G++R +
Sbjct: 47 RVVGLCDSDAFYAACERVRLNLS-EDAPLVVQQWES-----LIAVSYPARKYGISRMDKI 100
Query: 63 DEAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVLSEF--S 104
+AK+ CP++ V + + K + YR +++ V E +
Sbjct: 101 KDAKKKCPDLVSVHVATYKEGEKEPGYWDDIDTRTHKVSLDLYRRESAKIMNVFKEMLPN 160
Query: 105 NIVERASIDEAYIDLT----DVVHERMKSIGHIA--ASQLSNTFVVGFGPDNNDEDARKA 158
+E+ASIDEA+IDLT D + ER + +I A Q ++T + P E
Sbjct: 161 GEIEKASIDEAFIDLTQPVRDTILERYPYLANIPPNAPQGADTPL----PSPPLE----- 211
Query: 159 GVMEWLGQVY------------SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 206
++W +V+ S D S T L IA + ++R VL +
Sbjct: 212 --LDWADKVHLIPILPSDDGDDSPKDESEFPPTWHDVALCIAAEFMTKMRKQVLDTLGYS 269
Query: 207 CSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQ 266
SAG+A NK LAKL + KP QSIL ++ ++ +K+R LGGKLG +
Sbjct: 270 TSAGLARNKALAKLSASVRKPNGQSILRNDAIPNYLRPMAFQKIRFLGGKLGKAFADEYD 329
Query: 267 CSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVS-KSIGCCKRFPGKTC 325
S++ ++ SL ++QS F E++ W+Y + RGID V + KS+ K P
Sbjct: 330 VSSVGDILTVSLDEMQSKFGEESL-WVYELVRGIDRSEVKEKTAYFKSMLASKNLP--KP 386
Query: 326 LATRQDVSHWIQELADEVCERL 347
+ + WI+ LA E+ RL
Sbjct: 387 ITKSSEGPQWIRVLAAELTLRL 408
>gi|50547727|ref|XP_501333.1| YALI0C01573p [Yarrowia lipolytica]
gi|49647200|emb|CAG81630.1| YALI0C01573p [Yarrowia lipolytica CLIB122]
Length = 640
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 129/479 (26%), Positives = 224/479 (46%), Gaps = 63/479 (13%)
Query: 6 IALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
I +DMD F+ QVE L P G P+A Q++ G+IAV Y AR G+TRHMR
Sbjct: 26 IVHLDMDAFFAQVEQVRLGLPP---GTPVACRQWD-----GLIAVGYAARASGITRHMRA 77
Query: 63 DEAKQHCPEIELCRVPSV-RG---------------KADISKYRNAGREVIAVLSEFSNI 106
EA++ CP + + S RG K + YR AG++V+ ++ ++S++
Sbjct: 78 PEAQKLCPNLVMAHAASFKRGEDMWEYHANPSADDYKISLDPYRQAGKKVLNIVKQYSSV 137
Query: 107 VERASIDEAYIDLTD-VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG 165
VE+AS+DE+Y+DL + +E M + + QL + + F P K W G
Sbjct: 138 VEKASVDESYLDLGPRIFNEIMIAFPQL---QLLDNDLDNFLPAPPRAHELKIRGYNWDG 194
Query: 166 ----QVYSDT----------DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGI 211
++ +D D +++ + +D L I + +R V + ++ CSAGI
Sbjct: 195 LGVLEIVTDVSRFDPDIRVHDDTMVTDWDDLV-LMFGARISKRMREQVYEELKYTCSAGI 253
Query: 212 AHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTML 271
A + +AKL +KP Q+++ +++ S+ + +GGKLG+EV+E L
Sbjct: 254 ARCRSVAKLASAQNKPNNQTVVRAGALNNYLKKKSLTDIGGMGGKLGEEVLEKLGLD--- 310
Query: 272 ELEKFSLKQLQS------HFEEKTASW---LYYIARGIDHEPVNARLVSKSIGCCKRFPG 322
+ K ++ Q+Q+ + + AS ++ +ARG + + R+ KS+ K F
Sbjct: 311 KESKDNITQVQALSKQQLQQKLQNASLTEKVFNLARGNLYRGLKTRIELKSMLSAKNF-A 369
Query: 323 KTCLATRQDVSHWIQELADEVCERL-EDDLTLNK-RRAQLLTVSFTQETDGKVNSCSRSI 380
+ L R++ W+ A E+ R+ E + L RR + +++ + S + +
Sbjct: 370 RVPLKDRKEAELWLVVFAGELAMRIVEHEKELGTCRRPRTVSLQHARFKPMVKRSRQQDL 429
Query: 381 ALA-SYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPLGSHPSIQQFFK 438
L + KL++ + + + K P D P+ L LS + F L + SI FFK
Sbjct: 430 PLVHTNKLKEELFAAGVKLLKLIENEPEHDAY-PISMLSLSVTGFVELPAGASIGHFFK 487
>gi|302755030|ref|XP_002960939.1| hypothetical protein SELMODRAFT_139565 [Selaginella moellendorffii]
gi|300171878|gb|EFJ38478.1| hypothetical protein SELMODRAFT_139565 [Selaginella moellendorffii]
Length = 294
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 155/319 (48%), Gaps = 55/319 (17%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
T R++ +D+DCFY Q E P L +P+ V Q ++ NY AR GV + +
Sbjct: 6 TDRVVIHLDVDCFYAQSEILRRPWLRDRPVGVTQKFL-----VVTSNYVARQLGVPKMVP 60
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
DEAK+ C ++ L + G+ D++ YR A + ++ V+ F VE+ +DE +D+T+
Sbjct: 61 VDEAKRCCSDLVL-----INGE-DLTPYRYASKLIMEVIKRFGT-VEKRGLDECAVDVTE 113
Query: 122 VVHERMKS------IGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSL 175
V +R+ S +GH+ L+ G D L
Sbjct: 114 EVLKRVASANPTSFVGHVLGGDLTTQATQG--------------------------DLLL 147
Query: 176 MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQ 235
M T+ + EIR AV +T + CS GI+HNK+LAK+ C L+KP KQ+ + Q
Sbjct: 148 MVGTQ----------LAAEIRCAVEKETGYQCSCGISHNKMLAKMACSLNKPNKQTCITQ 197
Query: 236 SSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY 295
S+V+ L + K+ + G+ + ++ + TM +++ +L QL S F ++ + L+
Sbjct: 198 SAVNDFIVPLPVCKIPGV-GRQTEATLKEMGVETMGDMQSLTLAQLSSKFGDRFGNQLFD 256
Query: 296 IARGIDHEPVNARLVSKSI 314
RG D+ V + SKS+
Sbjct: 257 ACRGHDYSRVQDKGFSKSL 275
>gi|238828270|pdb|3GV5|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Ddadp
gi|238828273|pdb|3GV5|D Chain D, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Ddadp
Length = 420
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 157/305 (51%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV +
Sbjct: 26 SSRVIVHVDLDCFYAQVEXISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLXN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLTRYREXSYKVTELLEEFSPVVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
V +R++ + + +LS V G VY++ +L++
Sbjct: 135 XVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLHI 171
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E R A ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 172 --RLLVGSQIAAEXREAXYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 288
Query: 301 DHEPV 305
D+ PV
Sbjct: 289 DNSPV 293
>gi|320592660|gb|EFX05090.1| sister chromatid cohesion protein [Grosmannia clavigera kw1407]
Length = 870
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 123/437 (28%), Positives = 190/437 (43%), Gaps = 96/437 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++A ID+D +Y Q E PLAV Q+ +IAVNY AR G+ R +
Sbjct: 72 RVVAHIDLDAYYAQCEMLRLGVDDDTPLAVQQWRN-----LIAVNYPARAFGIGRMVTAV 126
Query: 64 EAKQHCPEIELCRVPSVR------------------GKADISKYRNAGREVIAV----LS 101
EA++ CP + L VP+ + K + YR RE++A L
Sbjct: 127 EARRLCPGLVLQHVPTWKEGETQWAYHADADKAMQTHKVSLEPYRIRSREILATIKASLP 186
Query: 102 EFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPD--NNDEDARKAG 159
+E+A IDE +IDL+ VH+ + + T+ P+ +D DA G
Sbjct: 187 AGRCRIEKAGIDEVFIDLSACVHDVL----------VHETY-----PELLADDGDASSHG 231
Query: 160 -----------VMEWL----GQVYSDTDTSLMENTEDFQ---ELAIAGV----------- 190
++W G + DT E+A +GV
Sbjct: 232 PDDPLPPPPAIALDWAATGSGVIQPDTGGREERPEGGGGGGDEMAQSGVDDDPPDWDDVA 291
Query: 191 ------IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-PQSSVSMLYA 243
IV +R A+ +F CSAGIA NK+++KL HKP +Q+++ P++ S L
Sbjct: 292 MLEGARIVRAVRMAIYDHLRFRCSAGIASNKLVSKLGSSQHKPDRQTVVRPRAVGSFLER 351
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHF---------EEKTASWLY 294
S+ ++R LGGKLG VV ++ EL L ++QS + TA +Y
Sbjct: 352 LSSVTRLRGLGGKLGARVVAAFDTESIAELRTIPLAEMQSRLAGGGAGESIDADTARHVY 411
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEV-CERLEDDLTL 353
+ RGIDH V +R KS+ K F + L + + W++ A E+ C L++ L+
Sbjct: 412 GMLRGIDHGEVTSRTEIKSLISAKSF--QPPLTSPEQGRRWLRVFAAELRCRLLDERLS- 468
Query: 354 NKRRAQLLTVSFTQETD 370
+A L VS ++ D
Sbjct: 469 ---QALLEAVSVGRDAD 482
>gi|168024165|ref|XP_001764607.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684185|gb|EDQ70589.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 680
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 176/380 (46%), Gaps = 66/380 (17%)
Query: 5 IIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
++ D+DCFY VE +L +PLAV Q++ G+IAVNY AR G+ RH R
Sbjct: 9 VVLHADLDCFYAAVEQVRLGIPTE-QPLAVQQWD-----GLIAVNYAARAVGIVRHERVS 62
Query: 64 EAKQHCPEIELCRVPSVRG---------------KADISKYRNAGREVIAVLSEFSNIVE 108
EA + CP++ L V ++ G KA + +YR A +V + +S + E
Sbjct: 63 EALRKCPDLHLVHVETIGGDKPGTPESLGPRGNAKASLERYRQASAKVFNIFRRYSKLCE 122
Query: 109 RASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG--- 165
RASIDEAY+D+++ V E ++ S+L P ++ ++ VM G
Sbjct: 123 RASIDEAYLDVSEQVEEMLEK-DMDWESELHRLLE----PTGSETTSKGVPVMLIEGGSL 177
Query: 166 QVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLH 225
+Y+ D L+ + +I + +RA+V ++ +
Sbjct: 178 AIYNAYDRRLLAGS----------IIADRMRASVRNELGYTI------------------ 209
Query: 226 KPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHF 285
S++P +V L L +KK++ LGGKLG+E+ + C+T E ++ L + F
Sbjct: 210 -----SVIPPRAVPGLMKALPLKKIKLLGGKLGEEMTKKWGCTTAGEAQQIPHAALVACF 264
Query: 286 EEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCE 345
++ ++ + +G+ E V + + KS+ K F LA + W+ L+ ++
Sbjct: 265 GDRLGTYAWKAVQGLKAEQVQVKDLVKSMLASKSFGAINELA---GIRRWLSVLSHDLAI 321
Query: 346 RLEDDLTLNKRRAQLLTVSF 365
R+ D +N+R+ ++ + +
Sbjct: 322 RMSRDFEMNQRQPKVFQLYY 341
>gi|448089441|ref|XP_004196808.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|448093718|ref|XP_004197839.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|359378230|emb|CCE84489.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|359379261|emb|CCE83458.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
Length = 693
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 105/390 (26%), Positives = 183/390 (46%), Gaps = 53/390 (13%)
Query: 5 IIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
+IA ID++ F+ QVE +LN S P+ Q+++ +IAV+Y AR G+ R
Sbjct: 43 VIAHIDLNAFFAQVEQIRLNLS-SNDPIVCAQWSS-----LIAVSYAARAYGINRMDTIK 96
Query: 64 EAKQHCPEI-------------ELCRVPSVRG----KADISKYRNAGREVIAVLSEFSNI 106
A+ CP++ VP + K + YR R++ V+ F
Sbjct: 97 VARAKCPDLIIAHAAVFQKGNSHWAYVPGLPDPDIHKVSLDPYRRESRKIFKVIKLFCKN 156
Query: 107 VERASIDEAYIDLTDVVHERMKSIGHIAAS---QLSNTFVVGFGPDNNDEDARKAGVMEW 163
VE+AS+DE YIDL +++ER++ I A Q N + PD + + V+
Sbjct: 157 VEKASVDEGYIDLGSLIYERLRKIFPEIADCEHQDDNELLPPL-PD------KSSSVIRA 209
Query: 164 LGQVYSDTDTSLMENTE------DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 215
G++Y + +T ++ + D+ + + + I+ EIR + F S G+A NK
Sbjct: 210 YGEIYYNKETLKLKKKDFPIRLHDWDDACILLGSQILFEIRWEIFKVLGFTTSGGVARNK 269
Query: 216 VLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCST------ 269
V+AKL G KP Q+I+ S+++ N + +R +GGK G +++TL T
Sbjct: 270 VMAKLAGGFLKPDNQTIILNSNINSFLENFELDDMRSMGGKAGQLILKTLGVPTDTKSNT 329
Query: 270 -MLELEKFSLKQLQSHF--EEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCL 326
+ F+L +L+ + T+ +Y + RG E + R KS+ K F +T +
Sbjct: 330 IAYIRDNFTLGELKDKLSNDSVTSEKIYDLVRGNYSEELTFRTDVKSMMSRKNFTSRTYV 389
Query: 327 ATRQDVSHWIQELADEVCERLE--DDLTLN 354
T +D W++ + ++ R+ DD ++N
Sbjct: 390 TTLKDAIDWLKVFSGDLVNRIVELDDESMN 419
>gi|401421627|ref|XP_003875302.1| putative DNA polymerase eta [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491539|emb|CBZ26810.1| putative DNA polymerase eta [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 772
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 148/325 (45%), Gaps = 55/325 (16%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R IA IDMDCFY QVE +L PL V Q+ G +IAVNY AR +GV R
Sbjct: 17 RCIAHIDMDCFYAQVEAVRLGVDCRVTPLVVAQW-----GSLIAVNYPARARGVKRFNNV 71
Query: 63 DEAKQHCPEIELCRVPSVRGKADISK----------------YRNAGREVIAVLSEFSNI 106
EA+ CP + + PS R +S+ YR+A R+V ++L+ I
Sbjct: 72 AEAQALCPGLVVALSPSYRMGESVSQYHPHPVQDSYKISLEPYRHASRQVFSILAATPGI 131
Query: 107 -VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG 165
VE+ SIDEAYID+T+ + + AA + P + R+A + W G
Sbjct: 132 QVEKGSIDEAYIDVTEAARRELAEVRAAAAGASLDPLADVMEPSTRLIEDRRAEMEAWFG 191
Query: 166 -------QVYSDTDTSL--------MENTEDF-------------QELAIAGVIVEEIRA 197
V+ + +L +E + F L A +V +R
Sbjct: 192 ARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGADDAAYAERCLLLCAASRVVHRLRQ 251
Query: 198 AVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSMLYANLSIKKVRHLGGK 256
+ ++ + CSAGIAHN+VLAK + HKP +Q+ +LP S S L+ L + VR GGK
Sbjct: 252 RIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRSASALF-ELPLSGVRGFGGK 310
Query: 257 LGDEVVETLQCSTMLELEKFSLKQL 281
LG V + C + E + L L
Sbjct: 311 LGAAV--SAVCGGVTECREAWLVPL 333
>gi|170067256|ref|XP_001868410.1| DNA polymerase IV [Culex quinquefasciatus]
gi|167863443|gb|EDS26826.1| DNA polymerase IV [Culex quinquefasciatus]
Length = 647
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 127/450 (28%), Positives = 199/450 (44%), Gaps = 80/450 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I IDMD +Y QVE L+PSL KP+ + Q ++ NY AR G+ +
Sbjct: 21 RVIIHIDMDYYYAQVEEVLDPSLKDKPVGIKQRFH-----VVTSNYVAREFGIKKMTLIT 75
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA++ CPE+ L V G+ DISKY+ + ++ +FS VE+ +DE Y+D+T +
Sbjct: 76 EARKLCPELVL-----VDGE-DISKYKQMSARINEIMHKFSGNVEKLGLDENYLDVTKEI 129
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL-GQVYSDTDTSLMENTEDF 182
E++ E +AG+++ + G VY + E E F
Sbjct: 130 SEQL-------------------------EQGVEAGLLDRVEGYVYPPLEGGCSER-EAF 163
Query: 183 QELAIAGV---------IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI- 232
+ G + +EIR + + C AG+AHNK+LAKLV ++K KQ++
Sbjct: 164 RRACGCGCDRRLILGTHMAKEIRDCIARELGLKCCAGVAHNKLLAKLVGSVNKQNKQTVL 223
Query: 233 LPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASW 292
LP S L + S+K + +G K E++E + T+ +L++ S+++L + A
Sbjct: 224 LPNCGSSFLASLGSVKALTGIGEKTA-EILEEVGVKTVRDLQETSVEKLAKRLGLEQAGR 282
Query: 293 LYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQD-VSHWIQELADEVCE------ 345
L IA G D PV A KS+G P + A +D H I L + E
Sbjct: 283 LKEIAFGKDDTPVKATGKPKSVGLEDSCPAISIRADAEDKFRHLIVRLVKNIAEDGRIPI 342
Query: 346 ------RLEDDLTLNKRR---AQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQ 396
R D + R + SF + DGK + LA I+ + M+
Sbjct: 343 AIKVTIRKHDSVRRTSHRECKQDKIMPSFFRHKDGK-------LVLADGAQDKILAIVMK 395
Query: 397 VINKTNSAPPISDLTPP--LLFLGLSASKF 424
+ + + DL P + LGLS KF
Sbjct: 396 LFER------MVDLQQPFNITLLGLSFFKF 419
>gi|393221247|gb|EJD06732.1| eta DNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 695
Score = 132 bits (333), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 77/405 (19%)
Query: 4 RIIALIDMDCFYC---QVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
RI+AL D + FY QV L+P + PL V+Q+ G +IAVNY AR G++R
Sbjct: 45 RIVALCDCNAFYANCEQVRLGLDPEI---PLVVLQW-----GMLIAVNYPARKFGISRMD 96
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAG-------------REVIAVLSEFSN-- 105
+ DEA++ CP++ + V + D KY + RE + + S F +
Sbjct: 97 KLDEARKRCPDLVVVHVATYAQGEDEPKYWDKPDVNTHKISLDLYRRESVKIHSMFKDQL 156
Query: 106 ------------------------IVERASIDEAYIDLTDVVH-ERMKSIGHIAASQLSN 140
+E+ASIDEA+ID + V E +K +++ + +
Sbjct: 157 PTGEVGMEHYFMEGYAINAVLLITSIEKASIDEAFIDFSIPVRDELLKRYPYLSEPPVDS 216
Query: 141 -------------TFVVGFG---P-DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+G G P D D K E + ++ D + +
Sbjct: 217 PSGPDTPLPPPPRISYIGLGNLIPIDPPKLDPEKEATTELIEEIEKDAPATWQDVG---- 272
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
LAIA ++ +R V K + SAGIA NK LAKL K Q+IL ++
Sbjct: 273 -LAIAAELMASMRKEVHEKLGYLTSAGIARNKFLAKLAASYRKFNTQNILRNLAIPGFLK 331
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+ +K+R LGGKLG + ST+ +L ++++QS F E + W+Y I RGID
Sbjct: 332 PMPFQKIRFLGGKLGKALATEYDVSTVGDLLHIGIEEMQSKFGE-CSVWVYEILRGIDRA 390
Query: 304 PVNAR-LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
V + +++KS+ K P L + HWI+ LA E+ RL
Sbjct: 391 EVKEKAVINKSMNASKNLP--KPLTDPSEGPHWIRMLAAELAIRL 433
>gi|302767294|ref|XP_002967067.1| hypothetical protein SELMODRAFT_87859 [Selaginella moellendorffii]
gi|300165058|gb|EFJ31666.1| hypothetical protein SELMODRAFT_87859 [Selaginella moellendorffii]
Length = 332
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 151/311 (48%), Gaps = 55/311 (17%)
Query: 10 DMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHC 69
D+DCFY Q E P L +P+ V Q ++ NY AR GV + + DEAK+ C
Sbjct: 1 DVDCFYAQSEILRRPWLRDRPVGVTQKFL-----VVTSNYVARQLGVPKMVPVDEAKRCC 55
Query: 70 PEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKS 129
++ L + G+ D++ YR A + ++ V+ F VE+ +DE +D+T+ V +R+ S
Sbjct: 56 SDLVL-----INGE-DLTPYRYASKLIMEVIKRFGT-VEKRGLDECAVDVTEEVLKRVAS 108
Query: 130 ------IGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+GH+ L+ G D LM T+
Sbjct: 109 ANPTSFVGHVLGGDLTTQATQG--------------------------DLLLMVGTQ--- 139
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+ EIR AV +T + CS GI+HNK+LAK+ C L+KP KQ+ + QS+V+
Sbjct: 140 -------LAAEIRCAVEKETGYQCSCGISHNKMLAKMACSLNKPDKQTCITQSAVNDFIV 192
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L ++K+ + G+ + ++ + TM +++ +L QL S F ++ + L+ RG D+
Sbjct: 193 PLPVRKIPGV-GRQTEATLKEMGVETMGDMQSLTLAQLSSKFGDRFGNQLFDACRGHDYS 251
Query: 304 PVNARLVSKSI 314
V + SKS+
Sbjct: 252 RVQDKGFSKSL 262
>gi|157868888|ref|XP_001682996.1| putative DNA polymerase eta [Leishmania major strain Friedlin]
gi|68223879|emb|CAJ04143.1| putative DNA polymerase eta [Leishmania major strain Friedlin]
Length = 760
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 119/449 (26%), Positives = 186/449 (41%), Gaps = 103/449 (22%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R IA +DMDCFY QVE +L PL + Q+ G +IAVNY AR +GV R
Sbjct: 15 RCIAHMDMDCFYAQVEAVRLGVDCRVTPLVLSQW-----GSLIAVNYPARARGVRRFSNV 69
Query: 63 DEAKQHCPEIELCRVPSVRGKADISK----------------YRNAGREVIAVLSEFSNI 106
EA+ CP + + PS R +S+ YR+A R++ ++L+ +
Sbjct: 70 SEAQALCPGLIVALSPSYRMGEAVSQYHPHPVQDSYKLSLEPYRHASRQIFSILAATPGV 129
Query: 107 -VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW-- 163
VE+ S+DEAY+D+T+ + + AA + P + R+A + W
Sbjct: 130 QVEKGSVDEAYVDVTEAARRELAEVRAAAAGASLDPLEDVMEPSTRLIEDRRAEMEAWLS 189
Query: 164 -----LGQVYSDTDTSL--------MENTEDF-------------QELAIAGVIVEEIRA 197
L V+ + +L +E + F L A +V +R
Sbjct: 190 ARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGADDAAYAERCLLLCAASRVVHRLRQ 249
Query: 198 AVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSMLYANLSIKKVRHLGGK 256
+ ++ + CSAGIAHN+VLAK + HKP +Q+ +LP S S L+ L + +R GGK
Sbjct: 250 RIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRSASALF-ELPLSGLRGFGGK 308
Query: 257 LGDEVVETLQCSTMLELEKFSL-------------------------------------- 278
LG V + C + E + L
Sbjct: 309 LGAAV--SAVCGGVTECREAWLVPLAQLRKLDGTCDVGDGEDAEGDREGRKRRPIARKRG 366
Query: 279 --------KQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQ 330
+ LQ T+ +++Y RG+ + + R +SK+I K F G+ +
Sbjct: 367 RAASASLERDLQGLVAHTTSLYVFYRLRGLAEDTILNRPLSKTIIASKNF-GRITTSVEM 425
Query: 331 DVSHWIQELADEVCERLEDDLTLNKRRAQ 359
V WI L E+C R E+ L + R +
Sbjct: 426 -VRRWIIVLTSELCSRYEEFTALYQIRGR 453
>gi|353235092|emb|CCA67110.1| related to DNA polymerase eta [Piriformospora indica DSM 11827]
Length = 615
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 175/389 (44%), Gaps = 67/389 (17%)
Query: 4 RIIALIDMDCFYCQVECK---LNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R I L D+DCFY Q E + ++P+L P+ V+Q++ +IAVNY AR G+ R
Sbjct: 37 RTIGLCDLDCFYAQCEQRRLGIDPAL---PIVVLQWDM-----LIAVNYPAREFGIKRMT 88
Query: 61 RGDEAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEFS 104
+ +AK+ CP + + V + + K + YR RE +L+ F
Sbjct: 89 KLPDAKKMCPNLVVVHVATYKDGESEPKYHPDPNNKTHKVSLDLYR---RESNKILNVFK 145
Query: 105 NI-----VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDED-ARKA 158
+E+ASIDE+++D T + + + AS ++ P N D
Sbjct: 146 TTLPTAEIEKASIDESFVDFTRPIQQILLERYPELASPPPDS------PLNLDTPLPPPP 199
Query: 159 GVMEW-LGQVYSDTDTSLMENTEDFQ----------------ELAIAGVIVEEIRAAVLS 201
+EW V+ + + TE + L+IA +++ R +
Sbjct: 200 ARLEWHKSSVWVPVNPEAEKGTESSEGPQQEQDSTPATWHDVALSIAAELLDNTRREIRE 259
Query: 202 KTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEV 261
+ SAGIA NK LAKLV KP QS+L +++ L +K+R LGGKLG +
Sbjct: 260 TLGYTTSAGIARNKFLAKLVASYKKPNSQSVLRNAAIPNYLRPLPFQKIRFLGGKLGTIL 319
Query: 262 VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR-LVSKSIGCCKRF 320
E + T+ EL L ++Q F ++ W+Y + RGID V + V+KS+ K
Sbjct: 320 AEEYEAKTVGELLYIDLAEMQRKFGPESL-WVYQVFRGIDIGEVKEKPPVNKSMLASKNL 378
Query: 321 PGKTCLATRQ--DVSHWIQELADEVCERL 347
P RQ DV W++ L E+ RL
Sbjct: 379 PK----PIRQDGDVLQWVRVLCSELAVRL 403
>gi|390600437|gb|EIN09832.1| DNA/RNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 634
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 180/401 (44%), Gaps = 81/401 (20%)
Query: 4 RIIALIDMDCFYC---QVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IAL D D FY QV ++P+ KPL V Q++ +IAVNY AR G++R
Sbjct: 47 RVIALCDSDAFYAACEQVRLGIDPA---KPLVVQQWDM-----LIAVNYPARKYGISRMD 98
Query: 61 RGDEAKQHCPEIELCRV---------------PSVRG-KADISKYRNAGREVIAVLSEF- 103
+ +AK+ CP++ V P R K + YR +V A+ E
Sbjct: 99 KARDAKEKCPDLICVHVATYKEGAKEPGYWPNPDTRTHKVSLDHYRRESMKVAAMFKEGV 158
Query: 104 -SNIVERASIDEAYIDLT----DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKA 158
VE+ASIDEA+ID T +++ +R + + P D
Sbjct: 159 PEGEVEKASIDEAFIDFTLPVRNMMLDRYPYLARVPPD----------APHGLDSRLPPP 208
Query: 159 GVMEWLGQ-----------------------VYSDTDTSLMENTEDFQELAIAGVIVEEI 195
++W G+ Y D D + T L++A ++++I
Sbjct: 209 PPIDWSGKGVVVPIKPVDDEKTDDDDQNSDEDYDDCDAA---TTWHDVALSLAAELMQKI 265
Query: 196 RAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV--RHL 253
R + +K + SAGIA NK LAKL KP Q+IL S++ + +KV R+L
Sbjct: 266 REDIHTKLGYTTSAGIARNKFLAKLAASYRKPMSQTILRNSAIPNYLRPMKFQKVSIRNL 325
Query: 254 GGKLGDEVVETLQCSTMLELEKFSLKQ-LQSHFEEKTASWLYYIAR-----GIDHEPVNA 307
GGKLG+ + + +T+ +L SL +Q F E++ W+Y I R GID V
Sbjct: 326 GGKLGEALAQEFDATTVGDLLNVSLADVMQRKFGEESL-WVYEILRYNTRFGIDRSEVKE 384
Query: 308 R-LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
+ +V+KS+ K T +A + HWI+ LA E+ RL
Sbjct: 385 KSIVNKSMLASKNL--ATPVAKPSEGHHWIRVLAAELALRL 423
>gi|258570849|ref|XP_002544228.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237904498|gb|EEP78899.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 588
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 113/470 (24%), Positives = 200/470 (42%), Gaps = 90/470 (19%)
Query: 29 KPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR------- 81
+PLAV Q+++ +IAVNY AR ++R + EA+ CP++ + V + R
Sbjct: 10 QPLAVQQWDS-----LIAVNYAARPFNISRMITAKEARARCPQLMMVHVATFREGEGGKW 64
Query: 82 ------------GKADISKYRNAGREVIAVLSE--------------------------F 103
K + YR RE++ + +
Sbjct: 65 AYRPEGDHDVATDKVSLDPYRAESREILRTMRDGLMAWAERVEPCGFGEGGGGRERDRSL 124
Query: 104 SNIVERASIDEAYIDLTDVVH----ERMKSIGHI-----AASQLSNTFVVGFGPDNNDED 154
+E+A IDE ++DL+ +V ER + + +L + DE
Sbjct: 125 MFKLEKAGIDEVFVDLSALVWATLLERYPMLREMEVKKEMGERLPRPPTTALQWEKEDE- 183
Query: 155 ARKAGVMEWLGQVYSDTDTSLMENTE-DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGI 211
D D E + D+ + + I I+ +R V + ++ CS GI
Sbjct: 184 -------------LVDLDEGETEEDDPDWDDVVMLIGAEIIRSVRLLVWERLKYTCSGGI 230
Query: 212 AHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTML 271
A NK++AKL +KP KQ+I+ +V + K+R+LGGKLG + T + +
Sbjct: 231 ARNKMMAKLGSACNKPNKQTIVRHRAVQQFLGDFKFTKIRNLGGKLGKHISSTFETEQVG 290
Query: 272 ELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQD 331
EL++ L+QL++ ++ T WL+ + RG D+ V R KS+ K F + + + +
Sbjct: 291 ELQQVPLEQLKAKLDDDTGMWLHELIRGNDYSEVTPRTQIKSMSSTKAF--RPSITSSEQ 348
Query: 332 VSHWIQELADEVCERL-EDDLTLNKRRAQLLTV-SFTQETDGKVNSCSRSIALASYKLQD 389
W++ E+ RL E+ + +KRR ++LT+ +T +T + +AL L
Sbjct: 349 AEKWLRIFVAEIYGRLVEEGVLEHKRRPKVLTIHRYTGQTKSRQIPIPSGMALGEEPLFA 408
Query: 390 IV-EVSMQVINKTNSAPPISDLTPPLLFLGLSASKFS-PLGSHPSIQQFF 437
+ ++ Q++N P I+ L L+ S F + + S+ FF
Sbjct: 409 LAKQLLKQIVNDGQMWPCIN--------LSLTVSGFEDGVAGNQSLDGFF 450
>gi|145502699|ref|XP_001437327.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404477|emb|CAK69930.1| unnamed protein product [Paramecium tetraurelia]
Length = 509
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 148/319 (46%), Gaps = 61/319 (19%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMD +Y Q E KL +P+ Q+N+ +IA+NY AR G+ R M DEA +
Sbjct: 11 IDMDAYYAQAEQKLLKIPDDQPVCARQWNS-----LIAINYPARAAGIKRGMLADEALKL 65
Query: 69 CPEIELCRVPS----------------------VRGKADISKYRNAGREVIAVLSEFSNI 106
CPE+ L V + + K + YR + + A++ +F
Sbjct: 66 CPEVFLPHVETFKISEGKMIFSTIQDKFTQHNKIEEKISLKYYREESKLIFAIIKQFCGC 125
Query: 107 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ 166
VE+ DE YI +++ + K E++G
Sbjct: 126 VEKGGTDECYIQVSE-------------------------------NELEKIEPHEFIGN 154
Query: 167 VYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHK 226
+ + +D Q + A ++ ++IR AV +TQ+ CSAGI+ NK+L+KL +K
Sbjct: 155 LMCAIPSDYQLTEQDIQIMK-ASILCQQIRDAVYKETQYKCSAGISFNKMLSKLASSTNK 213
Query: 227 PQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE 286
P KQ+I+ + + A +IKK+R GGK+ V++ + T+ + ++ SL QL+ F
Sbjct: 214 PNKQTIILECMLPECIAQFNIKKIRGFGGKIKHSFVKS-EIQTIGQAQQLSLSQLEMLFA 272
Query: 287 EKTASWLYYIARGIDHEPV 305
+K A ++Y RG D+E V
Sbjct: 273 DK-AQYVYDKLRGYDNEEV 290
>gi|401430181|ref|XP_003886498.1| unnamed protein product [Leishmania mexicana MHOM/GT/2001/U1103]
gi|356491265|emb|CBZ41029.1| unnamed protein product [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 619
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 136/513 (26%), Positives = 208/513 (40%), Gaps = 119/513 (23%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRH-MR 61
R IA IDMDCFY QVE +L P A+VQ+ G IAVNY AR +GV R +
Sbjct: 2 RCIAHIDMDCFYAQVEAVRLGVDCRVTPFALVQW-----GSFIAVNYPARARGVKRFCLS 56
Query: 62 GDEAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVL-SEFS 104
DE ++ P++++ + + K + YR+A R++ A+L +E
Sbjct: 57 PDEVRRELPDVQMSHIATYAMGESEYCYPEAPRINTHKVSLEPYRHASRQIFAILRAEPG 116
Query: 105 NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL 164
+V +A IDEAYID+T+ + + AA + P + R+A + W
Sbjct: 117 VVVGKAGIDEAYIDVTEAARRELAEVRAAAAGASLDPLADVMEPSTRLIEDRRAEMEAWF 176
Query: 165 G-------QVYSDTDTSL--------MENTEDF-------------QELAIAGVIVEEIR 196
G V+ + +L +E + F L A +V +R
Sbjct: 177 GARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGADDAAYAERCLLLCAASRVVHRLR 236
Query: 197 AAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSMLYANLSIKKVRHLGG 255
+ ++ + CSAGIAHN+VLAK + HKP +Q+ +LP S S L+ L + VR GG
Sbjct: 237 QRIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRSASALF-ELPLSGVRGFGG 295
Query: 256 KLGDEVVETLQCSTMLELEKFSL------------------------------------- 278
KLG V + C + E + L
Sbjct: 296 KLGAAV--SAVCGGVTECREAWLVPLAQLCKLDGACDVGDGEDAEDDTEGRVGRLYGRKR 353
Query: 279 ---------KQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATR 329
+ Q T+ +++Y RG+ + + R SK+I K F G+ L T
Sbjct: 354 GRAASPSMERNFQGLAAHTTSQYVFYRLRGLAEDTIVNRPFSKTIIASKNF-GR--LTTS 410
Query: 330 QDV-SHWIQELADEVCERLEDDLTLNKRRAQLLTVSFT----QETDGKVNSCSRSIALAS 384
+V W+ L E+C R E+ +L R + + + T G N RS+AL
Sbjct: 411 VEVLQRWVIVLTSELCSRYEEFTSLYHIRGRSFNIKLGNDGFRSTGGLSN---RSVALPE 467
Query: 385 YKLQDIV------EVSMQVINKTNSAPPISDLT 411
D++ EV NK +A LT
Sbjct: 468 AMQPDVLTAVAIREVEAVFRNKPGAAADSVTLT 500
>gi|383862079|ref|XP_003706511.1| PREDICTED: DNA polymerase iota-like [Megachile rotundata]
Length = 565
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 128/455 (28%), Positives = 205/455 (45%), Gaps = 63/455 (13%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I ID+DCFY QVE +P GKPL V Q N ++ NY AR G+ + M
Sbjct: 14 RTIIHIDVDCFYAQVEMLRHPEFEGKPLGVQQKNI-----VVTSNYLAREYGIKKCMSVQ 68
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA + CP + L V G+ D++ YR+ +++ VL +F+ +VER D+ ++D T +V
Sbjct: 69 EALKLCPGLNL-----VNGE-DLTNYRHFSDKILEVLHQFTPLVERLGFDDNFLDATSLV 122
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVME---WLGQVYSDTDTSLMENTE 180
+ M N+ D + ME +G+V+ +
Sbjct: 123 QKYMNP--------------------GNESDLNMSISMEDETPIGEVFGSVEEECPCGCH 162
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVS 239
L IA I EIR + + CSAGIAHNK+LAKLV LHKP +Q+ I P ++ +
Sbjct: 163 --ARLIIATKIAAEIRQRIHKELHVTCSAGIAHNKLLAKLVGSLHKPNQQTLIFPCNAPA 220
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+L + S+ K+ +G K +++ + T+ +L K L+ L+ A L A G
Sbjct: 221 LLSSIGSVSKIPGVGQKT-TQLLLSNNIKTVDDLRKTPLETLEGKIGVDLARKLKDNAEG 279
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCE-RLEDDLTLNKRRA 358
+D V +SIG F + +A +V + L + E +ED R
Sbjct: 280 VDETVVKPTGKKQSIGLEDGFKSVSLVA---EVESRLGVLLRRLTELAMEDGRIPVAMRL 336
Query: 359 QLLTVSFTQETDGKVNSCSRSIALASYKL----------QDIVEVSMQVINKTNSAPPIS 408
+ F + + GK +R AL + L ++ ++M++ ++T
Sbjct: 337 TVRKHDFNKPSSGKRE--TRQCALPKHLLPSSKSGIYDHAKMLALAMKLFHRT------V 388
Query: 409 DLTPP--LLFLGLSASKFSPLGSHP-SIQQFFKPQ 440
D++ P L LG++ +KF S SI F + Q
Sbjct: 389 DVSKPFHLTLLGVAFTKFEERSSGKNSITSFLRKQ 423
>gi|426199305|gb|EKV49230.1| hypothetical protein AGABI2DRAFT_184029 [Agaricus bisporus var.
bisporus H97]
Length = 672
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 126/431 (29%), Positives = 184/431 (42%), Gaps = 99/431 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL D D FY E PL V+Q++ +IAVNY AR G+TR +R
Sbjct: 60 RVVALCDSDAFYATCEMVRLGVDREIPLVVLQWD-----ALIAVNYPAREFGITRMIRLK 114
Query: 64 EAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVLSEF---- 103
EA + CP +++ V + + K + YR RE + + + F
Sbjct: 115 EALKLCPHLKVVHVATYKEGDAQPAYWDTVDTNTHKVSLDYYR---RESVKIAARFKASL 171
Query: 104 --SNIVERASIDEAYIDLTDVVHE----RMKSIGHIA------------------ASQLS 139
S +ERASIDEA+ D T V E R + H+ ++L
Sbjct: 172 PTSVEIERASIDEAFFDYTKTVKEILLQRYPYLAHVPKDAEHGIDTPLPPPPQLKWAELG 231
Query: 140 NTFVVGFG-PDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED-------FQE------- 184
VV P + +E+ ++ + G + +D +T T D F E
Sbjct: 232 TGHVVSLHRPPSEEENEAESKTISDSG-ISNDGETENSGETSDTVAKGTEFDEKEQFTTT 290
Query: 185 -----LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
L+IA ++ E RA V + + SAGIA NK LAKL KP QSIL ++
Sbjct: 291 WHDVALSIAAELMGEARAQV-REMGYTTSAGIARNKFLAKLTASYKKPNSQSILRNGAIP 349
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
L +K+R LGGKLG+ + + ST ++Q+ F E A W+Y + RG
Sbjct: 350 SYLRPLPFRKIRFLGGKLGEALAKEYDVST----------EMQNKFGE-NAIWVYEVLRG 398
Query: 300 IDHEPVNAR-LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED--------- 349
ID V + V+KS+ K P + + HWI+ LA E+ RL D
Sbjct: 399 IDRNEVKEKGKVNKSMLASKNLP--KPIKNTSEGHHWIRVLAAELALRLNDAREENPNLW 456
Query: 350 --DLTLNKRRA 358
L L+ RRA
Sbjct: 457 PKTLVLHARRA 467
>gi|156378071|ref|XP_001630968.1| predicted protein [Nematostella vectensis]
gi|156217999|gb|EDO38905.1| predicted protein [Nematostella vectensis]
Length = 403
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 151/319 (47%), Gaps = 50/319 (15%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I ID+DCFY QVE NP L +P+ V Q + ++ NY AR G+ + +
Sbjct: 3 RVIVHIDIDCFYAQVEMIRNPCLRDRPVGVSQKHI-----LVTCNYVARAMGLKKLISLA 57
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP++ + + G+ D++KYR V +L F+ VER +DE Y+D++++V
Sbjct: 58 EAKKKCPDLVI-----INGE-DLTKYREFSSRVTKLLRRFALRVERLGLDENYVDVSELV 111
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN----T 179
ERMK P G +G +Y D N
Sbjct: 112 QERMKH-----------------APR---------GSYIAVGCIYGDNILKGSSNEVCPC 145
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
+ L + VI E+R A+ + AGIAHNK+LAK+ +KP KQ++L V
Sbjct: 146 GCHERLTVGSVIASELRKAIFDEIGLTTCAGIAHNKLLAKIAGEQNKPNKQTLLYTERVE 205
Query: 240 MLYANLSIKKVRHLG----GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY 295
L L ++KV +G +LG +L +T+ EL++ S K L + F + L+
Sbjct: 206 GLMGLLPVRKVPGIGRSTCARLG-----SLGITTIAELQECSKKALLNEFNSQEVRILHA 260
Query: 296 IARGIDHEPVNARLVSKSI 314
++ G D V+ + KSI
Sbjct: 261 LSHGADDSQVSTDSMPKSI 279
>gi|431896181|gb|ELK05597.1| DNA polymerase iota [Pteropus alecto]
Length = 681
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 154/300 (51%), Gaps = 42/300 (14%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
+D+DCFY QVE NP L GKPL V Q+ ++ N+ AR GV + M +AK+
Sbjct: 1 MDLDCFYAQVEMISNPELKGKPLGV-QHKYL----VVTCNFFARELGVKQLMNVRDAKEK 55
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT++V +R++
Sbjct: 56 CPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPLVERLGFDENFVDLTEMVEKRLQ 109
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE--LA 186
+ S L+ + G +Y++ N D L
Sbjct: 110 QLHSDEISALTVS-----------------------GHIYNNQSI----NQHDILHIRLL 142
Query: 187 IAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSMLYANL 245
I I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S+ ++++
Sbjct: 143 IGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESTQDLIHSLN 202
Query: 246 SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPV 305
+K++ +G K +E L S++ +L+ FS K L+ A + ++ G D+ PV
Sbjct: 203 HLKEMPGIGYKTTKR-LEGLGISSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPV 261
>gi|395517555|ref|XP_003762941.1| PREDICTED: DNA polymerase iota-like, partial [Sarcophilus harrisii]
Length = 338
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 153/303 (50%), Gaps = 38/303 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I +D+DCFY QVE +P L GKPL V Q ++ NYEAR GV + M
Sbjct: 66 RVIVHVDLDCFYAQVEMISHPELKGKPLGVQQKYL-----VVTCNYEARKLGVKKLMSVR 120
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++D+T V
Sbjct: 121 DAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDITQTV 174
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+R+ + +D+ + V+ G VY++ +L N
Sbjct: 175 EKRLHQL-------------------QSDDYS----VVAVCGHVYNNQSVNL--NDILHV 209
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
L I I E+R A+ ++ AG+A NK+L+KLV G KP +Q++L S L
Sbjct: 210 RLLIGSQIAAEMREAIFNQLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQDLIG 269
Query: 244 NLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L IK++ +G K +E+L +++ +L+ FS + L+ A + ++ G D+
Sbjct: 270 SLDHIKQMPGIGYKTTKR-LESLGINSVHDLQIFSPEILEKELGISVAQRIQKLSFGEDN 328
Query: 303 EPV 305
PV
Sbjct: 329 SPV 331
>gi|395749898|ref|XP_003779026.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase iota [Pongo abelii]
Length = 703
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 152/305 (49%), Gaps = 46/305 (15%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL EAR GV + M
Sbjct: 51 SSRVIVHVDLDCFYAQVEMISNPELKDKPLG-------------NCTIEARKLGVKKLMN 97
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+ K+ CP++ L V G+ D ++YR +V +L EFS +VER DE ++DLT+
Sbjct: 98 VRDXKEKCPQLVL-----VNGE-DXTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 151
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + +DE VM G VY++ +L +
Sbjct: 152 MVEKRLQQL-------------------QSDE----LSVMTVSGHVYNNQSINLHDILH- 187
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 188 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 246
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L S++ +L+ FS K L+ A + ++ G
Sbjct: 247 IHSLNHIKEIPGIGYKTA-KCLEVLGISSVHDLQTFSPKILEKELGISVAQRIQKLSFGE 305
Query: 301 DHEPV 305
D+ PV
Sbjct: 306 DNSPV 310
>gi|74202822|dbj|BAE37492.1| unnamed protein product [Mus musculus]
Length = 267
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 146/279 (52%), Gaps = 38/279 (13%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L +PL V Q ++ NYEAR GV + M
Sbjct: 25 SSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLMN 79
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+S+YR +V +L EFS VER DE ++DLT+
Sbjct: 80 VRDAKEKCPQLVL-----VNGE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTE 133
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + + + G VY++ +L +
Sbjct: 134 MVEKRLQQL-----------------------PSEEVPSVTVFGHVYNNQSVNL--HNIM 168
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 169 HRRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHL 228
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLK 279
+++ IK++ +G K +E L +++ +L+ F +K
Sbjct: 229 IHSLNHIKEIPGIGYKTAKR-LEVLGINSVHDLQTFPIK 266
>gi|211065519|ref|NP_001122409.2| polymerase (DNA directed) iota [Nasonia vitripennis]
Length = 635
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 169/324 (52%), Gaps = 39/324 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I ID+D FY QVE +P GKPL V Q N ++ NYEAR GV + M +
Sbjct: 24 RSIVHIDVDYFYAQVEMMRHPEFQGKPLGVQQKNI-----VVTCNYEARAFGVKKCMLIE 78
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA + CP + L V+G+ D++ YR +++ +L +F++ VE+ +DE +ID+T VV
Sbjct: 79 EALRLCPSLIL-----VKGE-DLTPYRRMSAKILELLHQFTSSVEKLGLDENFIDVTSVV 132
Query: 124 HERMKSIGHIAAS--------QLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSL 175
+E IG+ + S + +TFV ED +G+++S +
Sbjct: 133 NEYTTRIGNNSKSSQHDENTTREESTFV-------QQEDMDHC---MPVGKIFSTPEEEC 182
Query: 176 MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-P 234
LA+A I ++R+ +L++ CSAGIAHNK+LAKL ++KP +Q+++ P
Sbjct: 183 PCGCH--TRLAVASSIAMDMRSKILNELGLTCSAGIAHNKLLAKLGGAVNKPNQQTVVYP 240
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTML---ELEKFSLKQLQSHFEEKTAS 291
S+ S+L + S+ K+ +G + E+L + +L ++ K L++LQ ++ A
Sbjct: 241 CSAASLLSSLGSVSKIPGVGRR----TAESLTANNILTVDDVRKTPLERLQVKIGKELAR 296
Query: 292 WLYYIARGIDHEPVNARLVSKSIG 315
+ A GID PV +SIG
Sbjct: 297 KIKDYAEGIDDTPVKPSGRPQSIG 320
>gi|299749828|ref|XP_001836363.2| eta DNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298408617|gb|EAU85452.2| eta DNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 669
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 109/410 (26%), Positives = 173/410 (42%), Gaps = 84/410 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ L D D FY E PL V+Q+++ +IAVNY AR G++R +
Sbjct: 45 RVVGLCDSDAFYAACEMVRLGVDKDTPLVVLQWDS-----LIAVNYPARKYGISRMDKKK 99
Query: 64 EAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVLSEF--SN 105
+A + CP +++ V + + K + YR ++ A+ E
Sbjct: 100 DALKRCPHLKVVHVATYKEGEKEPGYWDNVDTNTHKVSLDYYRRESMKIAALFRELLPGC 159
Query: 106 IVERASIDEAYIDLT----DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161
VE+ASIDEA+ID T +V+ +R + + P+ D +
Sbjct: 160 EVEKASIDEAFIDFTKPVREVLLQRYPYLAQVPPD----------APNGVDTPLPPPPPI 209
Query: 162 EWLGQ----------VYSDTDTSLMENT-----------------EDFQE---------- 184
W G S T +E E Q+
Sbjct: 210 SWYGTGDLIPINPVPATSTLTTGPVEGQDQPSTSKQQPAEEAVHDEGLQDGEDANTTWHD 269
Query: 185 --LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
L+IA +V + R VL + + SAG+A NK LAKL KP Q+IL +++
Sbjct: 270 VALSIAAGMVMKARKGVLEQLGYSTSAGLARNKFLAKLAASYRKPFGQNILRNAAIPNYL 329
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR---G 299
++ +K+R LGGKLG + + +T+ +L SL ++Q+ F E + W+Y I R G
Sbjct: 330 IPMAFQKIRFLGGKLGRALAQEYDAATVGDLLSISLDEMQNKFGEDSI-WVYEILRQYSG 388
Query: 300 IDHEPVNAR--LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
ID V + ++KS+ K P A+ + HWI+ LA E+ RL
Sbjct: 389 IDRSEVKDKGTTLTKSMLASKNLPKPITAAS--EGYHWIRVLAAELALRL 436
>gi|409078314|gb|EKM78677.1| hypothetical protein AGABI1DRAFT_121111 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 674
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 181/424 (42%), Gaps = 93/424 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL D D FY E PL V+Q++ +IAVNY AR G+TR +R
Sbjct: 70 RVVALCDSDAFYATCEMVRLGVDREIPLVVLQWD-----ALIAVNYPAREFGITRMIRLK 124
Query: 64 EAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVLSEFSNIV 107
EA + CP +++ V + + K + YR RE + + + F
Sbjct: 125 EALKLCPHLKVVHVATYKEGDAQPAYWDTVDTNTHKVSLDYYR---RESVKIAARFK--A 179
Query: 108 ERASIDEAYIDLTDVVH----ERMKSIGHIA------------------ASQLSNTFVVG 145
+RASIDEA+ D T V +R + H+ ++L VV
Sbjct: 180 KRASIDEAFFDYTKTVKGILLQRYPYLAHVPKDAEHGIDTPLPPPPQLKWAELGTGHVVP 239
Query: 146 FG-PDNNDEDARKAGVMEWLGQVYSD--------TDTSLMENTEDFQE----------LA 186
P + +E+ ++ + G D +DT+ D +E L+
Sbjct: 240 LHRPPSEEENEAESKTISDSGISNGDETENSGETSDTAAKGTEFDEKEQFTTTWHDVALS 299
Query: 187 IAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLS 246
IA ++ E RA V + + SAGIA NK LAKL KP QSIL ++ L
Sbjct: 300 IAAELMGEARAQV-REMGYTTSAGIARNKFLAKLTASYKKPNSQSILRNGAIPSYLRPLP 358
Query: 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVN 306
+K+R LGGKLG+ + + ST ++Q+ F E A W+Y + RGID V
Sbjct: 359 FRKIRFLGGKLGEALAKEYDVST----------EMQNKFGE-NAIWVYEVLRGIDRNEVK 407
Query: 307 AR-LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED-----------DLTLN 354
+ V+KS+ K P + + HWI+ LA E+ RL D L L+
Sbjct: 408 EKGKVNKSMLASKNLP--KPIKNTSEGHHWIRVLAAELALRLNDAREENPNLWPKTLVLH 465
Query: 355 KRRA 358
RRA
Sbjct: 466 ARRA 469
>gi|322783253|gb|EFZ10839.1| hypothetical protein SINV_80489 [Solenopsis invicta]
Length = 577
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 155/313 (49%), Gaps = 29/313 (9%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
+ I +D+DCFY QVE +P L GKPL V Q N ++ NY AR G+ + M
Sbjct: 14 KTIIHLDVDCFYAQVEMINHPELEGKPLGVQQKNI-----VVTSNYLAREYGIKKCMSVQ 68
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA + CPE+ L V G+ D++ YRN ++ +L +F+ +VER D+ ++D+T +V
Sbjct: 69 EALRLCPELAL-----VNGE-DLTNYRNYSTKITEILHQFTPLVERLGFDDNFLDVTSIV 122
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+++KS +SN+ + ED ++ V + G + +
Sbjct: 123 EKQLKSQNDTEL-DMSNSSI-------EFEDLKE--VSKIFGPLEEECPCGC------HT 166
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
L I I EIR + + CSAGIAHNK+LAKL L+KP +Q+++ S ML +
Sbjct: 167 RLMIGSKIAAEIRNRIYEELHLTCSAGIAHNKLLAKLAGSLNKPNQQTLIFPCSGPMLLS 226
Query: 244 NL-SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+ S+ K+ +G K E++ + T+ +L + L+ L+ A L A GID
Sbjct: 227 TIGSVSKIPGVGQK-TTELLLSNNIRTVDDLRRLPLENLELKIGVDLARRLKDNAEGIDD 285
Query: 303 EPVNARLVSKSIG 315
V +SIG
Sbjct: 286 TVVKPSGKKQSIG 298
>gi|194746257|ref|XP_001955597.1| GF18848 [Drosophila ananassae]
gi|190628634|gb|EDV44158.1| GF18848 [Drosophila ananassae]
Length = 732
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 208/453 (45%), Gaps = 87/453 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R + +DMD FY QVE +P+L K L + Q N ++ NY AR +GV++ M +
Sbjct: 15 RTVIHLDMDYFYAQVEEIRDPTLRTKALGIQQKNI-----VVTCNYVARARGVSKLMLIE 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA++ CP++ L V G+ D++ YR +++ +L ++ +VE+ DE ++D+T +V
Sbjct: 70 EAQRLCPDLVL-----VNGE-DLAPYRQMSQKIFDLLLNYTPLVEKLGFDENFMDVTSLV 123
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDF 182
R +N E +K V G +Y + T L +
Sbjct: 124 ELRQA---------------------HNAEAQQKPAV----GHIYPEDGTPLSACDCGCA 158
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
Q LAI I +EIR + + C AGI++NK+LAKLV HKP +Q++L +
Sbjct: 159 QRLAIGSRIAQEIREELKLRLGITCCAGISYNKLLAKLVGSSHKPNQQTVLVSTYAEQFM 218
Query: 243 ANLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
+L +K++ +G K ++E ST+ +L++ + ++ F +TA+ L +A G D
Sbjct: 219 RDLGDLKRITGIGQKTQCLLLEA-GMSTVEQLQQCDMDVMRKKFGFETATRLRDLAFGRD 277
Query: 302 HEPVNARLVSKSIGC---CKRFPGKTCLATRQDVSHWIQELADEVCERLEDD-------- 350
V K+IG CK ++ R DV + L + E++ +D
Sbjct: 278 TGLVRPTGKPKTIGMEDSCKP------ISVRTDVEERFRMLLKRLVEQVSEDGRIPISIK 331
Query: 351 LTLNK------------RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQD-----IVEV 393
+ L K ++A +L F K + C ++ +L D ++++
Sbjct: 332 VVLRKFDSQKKSSHRETKQANILPSLF------KTSVCPGETGVSKVQLADGAQDKLLKI 385
Query: 394 SMQVINKTNSAPPISDLTPP--LLFLGLSASKF 424
M++ + I DL+ P + LGL+ SKF
Sbjct: 386 VMRLFER------IVDLSKPFNITLLGLAFSKF 412
>gi|452820346|gb|EME27389.1| DNA polymerase iota subunit [Galdieria sulphuraria]
Length = 525
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 187/388 (48%), Gaps = 46/388 (11%)
Query: 5 IIALIDMDCFYCQVECKLNPSL-HGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
IIAL DMD FYCQVE + P + +P+ Q N ++ NY AR GV + M
Sbjct: 16 IIAL-DMDYFYCQVELRKRPDIDRNRPVGAFQRNL-----VVTCNYPARAAGVKKLMLVK 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIV--ERASIDEAYIDLTD 121
+A CP++ L +D+ YR A E+I+++ + +V E +DE +ID+T
Sbjct: 70 DAYDLCPDLIL------LDASDLKDYRIACSEIISLIKDTFGVVAVENLGLDEFFIDVTK 123
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
++ +R + T + GF W + + D+ + E+
Sbjct: 124 ILCDREEEYS-------CETSIKGFC---------------WPVE---ERDSCICFEKEE 158
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSM 240
+ A + EIR + SK Q CS G++++K+L+KL +HKP +Q+ ILPQ S
Sbjct: 159 AKPFVAASHLCFEIRETIKSKLQLTCSGGLSNSKLLSKLAASIHKPDEQTVILPQCVESY 218
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
L +NL+++K+ +G +V+ ST +L +++L F + L+ I RGI
Sbjct: 219 L-SNLNLRKLPGIGSATYQSLVDHFLVSTCEQLRCIPVERLVEVFGSRLGIRLFNICRGI 277
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL-NKRRAQ 359
D E V+ + KSI C +RF KT +V ++ + + + +RL + T+ R +
Sbjct: 278 DEESVHDTSLVKSISCEERF-SKT--ERWSEVERYLGIVVERLLDRLVEHATVFAGRYGR 334
Query: 360 LLTVSFTQETDGKVNSCSRSIALASYKL 387
LL +S+ + + + S S ++ +L
Sbjct: 335 LLIISYLRSSSTRRESISCNVPFDVIRL 362
>gi|321470529|gb|EFX81505.1| hypothetical protein DAPPUDRAFT_3781 [Daphnia pulex]
Length = 382
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 176/378 (46%), Gaps = 62/378 (16%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I ID+DCFY QVE LNPSL GKPL + Q N ++ NYEAR GV + M
Sbjct: 1 RVIIHIDIDCFYAQVETILNPSLCGKPLGIKQKNI-----VVTCNYEARALGVEKLMSIK 55
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A + CP + L D+ KYR+ ++ +L FS VE+ +DE +ID++ +
Sbjct: 56 TALEKCPSLVLAN------GEDLKKYRDMSEKIYQILQSFSPFVEKLGLDENFIDISHKI 109
Query: 124 HE----RMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
++ + + GHI F N+DE T T
Sbjct: 110 NKSPEIKPEVSGHI------------FEEKNSDE-------------------TCACGCT 138
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
+ +E +I +E+R + S+ AGIA NK+LAKLV HKP +Q+ L S S
Sbjct: 139 DRLKE---GSIIAQEMRNQLKSELGITSCAGIACNKLLAKLVGATHKPNQQTTL--FSAS 193
Query: 240 MLYANLSIKKVRHLGGKLGDEV---VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
L S+K R++ G +G + +E L T+ +L+ L +L KTA+ + +
Sbjct: 194 SLNLMKSLKHPRNIPG-IGSAMNRKLEVLGIDTIEKLQATDLFKLIEALGVKTANQIQQL 252
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
+ GID V KSIG FP + + +V ++ L D V E +E D +R
Sbjct: 253 SFGIDDSHVKITDRPKSIGAEDGFP---TIKSETEVRKKLKCLLDRVWELVEKD---GRR 306
Query: 357 RAQL-LTVSFTQETDGKV 373
+Q+ LTV T+ V
Sbjct: 307 PSQVKLTVRKLHATNHSV 324
>gi|406601529|emb|CCH46835.1| N-acetyltransferase [Wickerhamomyces ciferrii]
Length = 657
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 107/393 (27%), Positives = 181/393 (46%), Gaps = 46/393 (11%)
Query: 5 IIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
+IA ID++ F+ QVE +L S + VQ+++ +IAV+Y+AR G+TR +
Sbjct: 43 VIAHIDVNAFFAQVEQIRLGLSTE-DAVVCVQWSS-----LIAVSYKAREYGITRMDTLE 96
Query: 64 EAKQHCPEIELCRVPSVRG--------------------KADISKYRNAGREVIAVLSEF 103
AK CP ++ R K + YR R+++ +
Sbjct: 97 NAKLKCPILKAIHTAVFRKGENFWRYHDDDNEFPSPIDHKVSLDPYRRESRKILKIFKSI 156
Query: 104 SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW 163
++VE+AS+DE+++DL +V +R+ + Q+ N GF P D +E
Sbjct: 157 VDLVEKASVDESFMDLGRLVIKRVFEMIPDLQKQIENLDSDGFLPLIPD-----GFTLEV 211
Query: 164 LGQVYSDT--DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLV 221
G V ++ TSL+ D + I G I EIR V + + SAG+ K +AKL
Sbjct: 212 TGDVITNEFDSTSLIIKDWDDLLMIIGGQITNEIRLQVQKELGYTLSAGVGRVKTIAKLA 271
Query: 222 CGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGD----EVVETLQCSTMLELEKFS 277
G KP Q+I+ +S++ N +GGK G+ ++ L+ S +
Sbjct: 272 SGFRKPDNQTIVRNNSINNFLKNFDFTDFWSMGGKTGEFIKMKLSPPLEDSIAFIRNNYD 331
Query: 278 LKQLQSHFEEK-TASWLYYIARGIDHEPVNARLVSKSIGCCK--RFPGKTCLATRQDVSH 334
L +LQ + E+K AS LY + RG + +++R++ KS+ K RF L D
Sbjct: 332 LNELQDYLEDKELASKLYQLIRGEYMQSLSSRIILKSMNSNKNIRFKSVKSLG---DSIQ 388
Query: 335 WIQELADEVCERL--EDDLTLNKRRAQLLTVSF 365
WI+ + ++ +RL +D K R + +++ F
Sbjct: 389 WIKVFSADLYQRLIETNDENGYKTRPKTISIHF 421
>gi|194904125|ref|XP_001981005.1| GG23702 [Drosophila erecta]
gi|190652708|gb|EDV49963.1| GG23702 [Drosophila erecta]
Length = 737
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 121/452 (26%), Positives = 203/452 (44%), Gaps = 85/452 (18%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY QVE +P+L K L + Q N ++ NY AR KGV + M
Sbjct: 15 RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVAKLMLIA 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA++ CP++ L V G+ D++ YR + + +L ++ +VE+ DE Y+D+T +V
Sbjct: 70 EAQRICPDLVL-----VNGE-DLTPYRQMSQRIFDLLLNYTPLVEKLGFDENYMDVTALV 123
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
R H+A +QL + D G S+ D Q
Sbjct: 124 ELRQ---AHVAEAQLKPPVGHTYPAD---------------GTPLSNCDCGCA------Q 159
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
LAI + +EIR + + C AGIA+NK+LAKLV HKP +Q++L +
Sbjct: 160 RLAIGTRVAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVLVSTYAEQFMR 219
Query: 244 NLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L +K++ +G K ++E S++ +L++ + ++ F +TA+ L +A G D
Sbjct: 220 ELGDLKRITGIGQKTQCLLLEA-GMSSVEQLQQCDMDIMRKKFGFETATRLRDLAFGRDT 278
Query: 303 EPVNARLVSKSIG---CCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD--------L 351
V K+IG CK ++ R DV + L + E++ +D +
Sbjct: 279 SSVRPTGKPKTIGMEDACKP------ISVRTDVEERFRMLLKRLVEQVAEDGRVPIAIKV 332
Query: 352 TLNK------------RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQD-----IVEVS 394
L K ++A +L F K + C ++ +L D ++++
Sbjct: 333 VLRKFDSQKKSSHRETKQANILPSLF------KTSMCPGETGVSKVQLADGAQEKLLKIV 386
Query: 395 MQVINKTNSAPPISDLTPP--LLFLGLSASKF 424
M++ + I D++ P + LGL+ SKF
Sbjct: 387 MRLFER------IVDMSKPFNITLLGLAFSKF 412
>gi|449542568|gb|EMD33547.1| hypothetical protein CERSUDRAFT_57122 [Ceriporiopsis subvermispora
B]
Length = 628
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 179/403 (44%), Gaps = 90/403 (22%)
Query: 4 RIIALIDMDCFYC---QVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R++AL D D FY QV L+P L PL V Q+++ +IAVNY AR G+TR
Sbjct: 37 RVVALCDSDAFYAACEQVRLDLDPKL---PLVVQQWDS-----LIAVNYPARTYGITRME 88
Query: 61 RGDEAKQHCPEIELCRVPSVR-GKADISKYRNAG------------REVIAVLSEFSNI- 106
+ EAK+ CPE+ + V + + G+ + + N RE + ++ F +
Sbjct: 89 KITEAKRKCPELVVVHVATYKEGEKEPGYWENPDTHTHKVSLDHYRRESMKIIQMFKDGM 148
Query: 107 ----VERASIDEAYIDLTDVVHER-MKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161
+E+ASIDEA+ID T V E +K ++A V P D +
Sbjct: 149 PTAEIEKASIDEAFIDFTRPVREEILKRYPYLAK-------VPADAPQGADSPLPPPPPI 201
Query: 162 EW----------LGQVYSDTDTSLME--NTEDFQE---------------LAIAGVIVEE 194
W +V+ D++ ++ T D + L+IA +
Sbjct: 202 CWDNRGTVIPLSPAEVHDPQDSTTVQPNTTPDDHDGVSEDDTSTTWHDVALSIAAEYMMT 261
Query: 195 IRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLG 254
IR + +K + SAGIA NK LAKL KP QSIL +++ + +K+R LG
Sbjct: 262 IRHEIYTKLGYSLSAGIARNKFLAKLTASYKKPNNQSILRDAAIPNYLRPMPFQKIRFLG 321
Query: 255 GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSI 314
GKLG + + ST+ + L +Q F E + W+Y I R VS++
Sbjct: 322 GKLGKALAQEYDVSTVGD-----LLSMQRKFGEDSI-WVYEI----------LRYVSQAY 365
Query: 315 GCCKRFP-GKTCLATRQDVS---------HWIQELADEVCERL 347
CK+ K+ LA++ ++ HWI+ LA E+ RL
Sbjct: 366 ATCKKSAVNKSMLASKNLLNPVTKPSQGHHWIRVLAAELALRL 408
>gi|170098863|ref|XP_001880650.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644175|gb|EDR08425.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 629
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 114/401 (28%), Positives = 175/401 (43%), Gaps = 71/401 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+IAL D D FY E PL V+Q+ +IAVNY AR G++R +
Sbjct: 44 RVIALCDSDAFYAACEMVRLEVDKETPLVVLQWE-----ALIAVNYAARKFGISRMDKLK 98
Query: 64 EAKQHCPEIELCRVPSVR-GKADISKYRNAG------------REVIAVLSEFSNI---- 106
+A + CP +++ V + + G+ + + N RE + + F +
Sbjct: 99 DALERCPHLKVVHVATYKEGEKEPGYWDNVDTNTHKVSLDYYRRESVKISKLFKELLVEC 158
Query: 107 -VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNT--------------------FVVG 145
VE+ASIDEA+ D + V E + A+ N +V+
Sbjct: 159 EVEKASIDEAFFDFSKPVREILLQRYPYLATVPPNAPDGVDTPLPPPPPIHWDDLGWVIP 218
Query: 146 FGP-------------DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIV 192
P ND D K V E + + D ++ + D L+IA ++
Sbjct: 219 INPPPPSEQVEEENKGQENDIDQEKDKVQEDVSSSWKDEES--IPTWHDVA-LSIAAELM 275
Query: 193 EEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ--SILPQSSVSMLYANLSIKKV 250
RA VL K + SAGIA NK LAKL KP Q SIL +++ ++ +K+
Sbjct: 276 GSARAQVLQKLGYSTSAGIARNKFLAKLTASYKKPNSQAGSILRNAAIPNYLKPIAFRKI 335
Query: 251 RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR-- 308
R LGGKLG + ST+ L+ +Q+ F E++ W+Y + RGID V +
Sbjct: 336 RFLGGKLGKAFAQEYDASTVTPLD-----DMQNKFGEESI-WVYEVLRGIDRAEVKDKGS 389
Query: 309 LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED 349
+++KS+ K P A+ + HWI+ LA E+ RL D
Sbjct: 390 VLNKSMLASKNLPKPIKNAS--EGHHWIRVLAAELALRLND 428
>gi|195499016|ref|XP_002096768.1| GE25854 [Drosophila yakuba]
gi|194182869|gb|EDW96480.1| GE25854 [Drosophila yakuba]
Length = 737
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 122/452 (26%), Positives = 203/452 (44%), Gaps = 85/452 (18%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY QVE +P+L K L + Q N ++ NY AR KGVT+ M
Sbjct: 15 RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVTKLMLIA 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA++ CP++ L V G+ D++ YR + + +L ++ +VE+ DE ++D+T +V
Sbjct: 70 EAQRICPDLVL-----VNGE-DLTPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV 123
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
R H+A +Q + D G S+ D Q
Sbjct: 124 ELRQ---AHVAEAQTKPPVGHTYPAD---------------GTPLSNCDCGCA------Q 159
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
LAI I +EIR + + C AGIA+NK+LAKLV HKP +Q++L +
Sbjct: 160 RLAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVLVSTYAEQFMR 219
Query: 244 NLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L +K+V +G K ++E S++ +L++ + ++ F +TA+ L +A G D
Sbjct: 220 ELGDLKRVTGIGQKTQCLLLEA-GMSSIEQLQQCDMDVMRKKFGFETATRLRDLAFGRDT 278
Query: 303 EPVNARLVSKSIG---CCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD--------L 351
V K+IG CK ++ R DV + L + E++ +D +
Sbjct: 279 SSVRPTGKPKTIGMEDACKP------ISVRTDVEERFRMLLKRLVEQVAEDGRVPIAIKV 332
Query: 352 TLNK------------RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQD-----IVEVS 394
L K ++A +L F K + C ++ +L D ++++
Sbjct: 333 VLRKFDSQKKTSHRETKQANILPSLF------KTSVCPGETGVSKVQLADGAQEKLLKIV 386
Query: 395 MQVINKTNSAPPISDLTPP--LLFLGLSASKF 424
M++ + I D++ P + LGL+ SKF
Sbjct: 387 MRLFER------IVDMSKPFNITLLGLAFSKF 412
>gi|367021894|ref|XP_003660232.1| hypothetical protein MYCTH_2298274 [Myceliophthora thermophila ATCC
42464]
gi|347007499|gb|AEO54987.1| hypothetical protein MYCTH_2298274 [Myceliophthora thermophila ATCC
42464]
Length = 577
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 146/297 (49%), Gaps = 32/297 (10%)
Query: 83 KADISKYRNAGREVIAVLSEF--SNI--VERASIDEAYIDLTDVVHERMKSIGHIAASQL 138
K + YR R++ AV+ E SN+ VE+A IDE ++DL+ H+ A L
Sbjct: 43 KVSLDPYRLESRKIFAVIKEILPSNLQKVEKAGIDEMFLDLS----------AHVHALLL 92
Query: 139 SNTFVVGFGPDNNDED----ARKAGVMEWLGQVYSDTDTSLMENTE----DFQELA--IA 188
+ GP D ++W D D EN E D+ ++A +A
Sbjct: 93 ERFPELASGPPKGDPSEPLPMPPISALDWQADALVDLDD---ENAELEDPDWDDVAFCVA 149
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
+V +RAA+ K ++ C+AGIA NK+L+KL KP +Q+++ +V +
Sbjct: 150 SEVVRNVRAAIRDKLRYTCAAGIARNKLLSKLGSAHKKPNQQTVIRNRAVRQFLSGFKFT 209
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
K R+LGGKLG++V ++ EL S++QL+ ++T W+Y RGID VN R
Sbjct: 210 KFRNLGGKLGEQVTREFGSESVPELLSVSVEQLKLKLGDETGVWVYNTLRGIDTSEVNPR 269
Query: 309 LVSKSIGCCKRF-PGKTCLATRQDVSHWIQELADEVCERL-EDDLTLNKRRAQLLTV 363
KS+ K F PG ++T + + W++ ++ RL E+ + NKRR + + +
Sbjct: 270 TQIKSMFSAKSFRPG---ISTVEQATKWLRIFVADIFARLVEEGVLENKRRPRTINL 323
>gi|145523365|ref|XP_001447521.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415032|emb|CAK80124.1| unnamed protein product [Paramecium tetraurelia]
Length = 521
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 206/459 (44%), Gaps = 77/459 (16%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMD +Y Q E KL +P+ Q+N+ +IA+NY AR G+ R M +EA +
Sbjct: 11 IDMDAYYAQAEQKLLNIPEDQPVCARQWNS-----LIAINYPARDAGIKRGMLSEEAIKL 65
Query: 69 CPEIELCRVPSVR----------------------GKADISKYRNAGREVIAVLSEFSNI 106
CP + L V + + K + YR + + + F N
Sbjct: 66 CPNVMLPHVETFKVIDGKMVFSTLKDKYIQHNQYEEKVSLRYYRQESKLIFTTIKRFCNC 125
Query: 107 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ 166
VE+ DE YI +++ K + I A Q +G +M+ L +
Sbjct: 126 VEKGGTDEGYIQVSE------KELEDIEAQQF-------YG-----------HLMKELPE 161
Query: 167 VYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHK 226
Y T+ + L A ++ + IR A+ ++T++ CSAGI+ NK+LAKL +K
Sbjct: 162 DYQLTEQDHL--------LRRASLLCQNIRDAIYTETKYKCSAGISFNKMLAKLASATNK 213
Query: 227 PQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE 286
P KQ+I+ + + +N+ I K+R GGK+ + ++E+ T+ + + S+ +LQS F
Sbjct: 214 PNKQTIILECMLPECISNIGINKIRGFGGKVQEALLES-GLKTVGQAQTLSIYELQSLFG 272
Query: 287 EKTASWLYYIARGIDHEPVNAR--LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVC 344
+K A ++Y RG D E V L +KSI K KT ++R+ + ++ + ++
Sbjct: 273 DK-AQYIYDKLRGYDDEIVKKEVDLKNKSILSLKNIK-KT--SSREVIIQSLELILHDIT 328
Query: 345 ERLEDDLTLNKRRAQLLTVSFTQETDG---KVNSCSRSIALASYKLQDIVEVSMQVINKT 401
R+ D + +L + + G K ++ + S++L I E ++N+
Sbjct: 329 MRVTDYYEDSNLVPSVLVIHYHNVEKGSHQKSEPIYLTLPIESFRL-TIEERVHSILNQI 387
Query: 402 NSAPPISDLTPPLLFLGLSASKFSPL--GSHPSIQQFFK 438
PL+ +G+S F P+ G I FFK
Sbjct: 388 QDNEMF-----PLIHIGISCRYFKPMIQGIQNPITMFFK 421
>gi|195330788|ref|XP_002032085.1| GM23708 [Drosophila sechellia]
gi|194121028|gb|EDW43071.1| GM23708 [Drosophila sechellia]
Length = 735
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 123/455 (27%), Positives = 206/455 (45%), Gaps = 91/455 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY QVE +P+L K L + Q N ++ NY AR KGVT+ M
Sbjct: 15 RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVTKLMLIA 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA++ CP++ L V G+ D++ YR + + +L ++ +VE+ DE ++D+T +V
Sbjct: 70 EAQRICPDLVL-----VNGE-DLAPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV 123
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED-- 181
R H+A +A + +G Y T L +T D
Sbjct: 124 ELRQ---AHVA----------------------EALLRPPVGHTYPADGTPL--STCDCG 156
Query: 182 -FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
Q LAI I +EIR + + C AGIA+NK+LAKLV HKP +Q++L +
Sbjct: 157 CAQRLAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVLVSTYAEQ 216
Query: 241 LYANLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
L +K++ +G K ++E S++ +L++ + ++ F +TA+ L +A G
Sbjct: 217 FMRELGDLKRITGIGQKTQCLLLEA-GMSSVEQLQQCDMDVMRKKFGFETATRLRDLAFG 275
Query: 300 IDHEPVNARLVSKSIG---CCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD------ 350
D V K+IG CK ++ R DV + L + E++ +D
Sbjct: 276 RDTSSVRPSGKPKTIGMEDACKP------ISVRTDVEERFRMLLKRLVEQVAEDGRVPIA 329
Query: 351 --LTLNK------------RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQD-----IV 391
+ L K ++A +L F K + C ++ +L D ++
Sbjct: 330 IKVVLRKFDSQKKSSHRETKQANILPSLF------KTSMCPGETGVSKVQLADGAQDKLL 383
Query: 392 EVSMQVINKTNSAPPISDLTPP--LLFLGLSASKF 424
++ M++ + I D++ P + LGL+ SKF
Sbjct: 384 KIVMRLFER------IVDMSKPFNITLLGLAFSKF 412
>gi|407921870|gb|EKG15007.1| DNA-repair protein UmuC-like protein [Macrophomina phaseolina MS6]
Length = 591
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 147/299 (49%), Gaps = 29/299 (9%)
Query: 83 KADISKYRNAGREVIAVL-----SEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQ 137
K + YR R ++A++ SE VE+ASIDE ++DL+ VH S
Sbjct: 5 KVSLDPYRLESRRILALIKGSLPSELQR-VEKASIDEVFMDLSAHVH-----------SV 52
Query: 138 LSNTFVVGFGPDNNDE-----DARKAGVMEWLGQVYSDTDTSLMENTEDFQE---LAIAG 189
+ + GP D+ ++W D D + E+ + + + I
Sbjct: 53 MLERYPELAGPPPYDDLMENLPTPPITALDWQTDHLVDLDANQTEDDDPDWDDIAILIGS 112
Query: 190 VIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKK 249
IV +IRA + + ++ CSAG+A NK+LAKL G KP +Q+++ +V + + K
Sbjct: 113 EIVRDIRAKIFEELKYTCSAGVARNKMLAKLGSGHQKPNQQTVIRNRAVQNFLSEMKFTK 172
Query: 250 VRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARL 309
+R+LGGKLGDEVV T+ +L L+QLQ + T WLY I RG D VN+RL
Sbjct: 173 IRNLGGKLGDEVVAMFNTETVKDLLDVPLEQLQ-RLGDGTGIWLYDIIRGNDTSEVNSRL 231
Query: 310 VSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCER-LEDDLTLNKRRAQLLTVSFTQ 367
KS+ K F + + T + W++ + ++ R +E+ + NKRR + +T+ Q
Sbjct: 232 KIKSMLSAKSF--RPSINTFEQGIRWLRIFSADIFSRCVEEGVLENKRRPKTITLHHRQ 288
>gi|308809351|ref|XP_003081985.1| Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS)
[Ostreococcus tauri]
gi|116060452|emb|CAL55788.1| Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS)
[Ostreococcus tauri]
Length = 595
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 134/263 (50%), Gaps = 9/263 (3%)
Query: 167 VYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHK 226
+ D + S TE LA I +R A + + + SAGIA NK+LAKL G++K
Sbjct: 244 AWWDREESAWGETEKL--LAAGAYICHNLRKACVDELGYTLSAGIATNKMLAKLTSGMNK 301
Query: 227 PQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE 286
P Q++L L A L I ++R LG K G E+VE L T+ EL + +++L+
Sbjct: 302 PASQTVLCPDHTEALLAELPIDRIRGLGAKFGRELVEGLDVKTIGELARTPIRKLEEICG 361
Query: 287 EKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCER 346
E+ A W+ ++ G D +PV R + KSIG K F G + + + W+ ELA E+ +R
Sbjct: 362 EERAQWVRKVSLGQDDDPVKEREMPKSIGTGKTFRGALAIRSLESAKKWLAELAAELNDR 421
Query: 347 LEDDLTLNKRRAQLLTVSFTQETDGKVNS--CSRSIALASYKLQDIVEVSMQVINKTNSA 404
EDD R +LLT+ + + NS CSR + +I + ++ +I+K +S
Sbjct: 422 CEDDRDEWNREPKLLTLGLSSPDELNTNSGHCSRRCPM-RLGADEITQDALALISKWSSG 480
Query: 405 PPISDLTPPLLFLGLSASKFSPL 427
SD + + + +SAS F L
Sbjct: 481 R--SDWS--ITGMSVSASNFVTL 499
Score = 100 bits (250), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 83/142 (58%), Gaps = 30/142 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHG----KPLAVVQYNTWKGGGI--------------- 44
R++A +D+D FYCQVE + HG PL V QY+ ++ GG+
Sbjct: 6 RVVAHLDLDAFYCQVE----RAAHGIDVNVPLVVAQYDPFERGGVRTRDQGARRILRDGL 61
Query: 45 -----IAVNYEARHKGVTRHMRGDEAKQHCPE-IELCRVPSVRGKADISKYRNAGREVIA 98
IAV+YEAR +GV R+MR +A++ C + + +VP+ R KAD++ YR AG V
Sbjct: 62 ERHSLIAVSYEARARGVKRNMRAIDARRLCGDGAVVVQVPTRRSKADLTAYRRAGAAVAR 121
Query: 99 VLSEFSNIVERASIDEAYIDLT 120
+LS ++ERASIDEAY+DLT
Sbjct: 122 ILSR-GGVMERASIDEAYLDLT 142
>gi|195390592|ref|XP_002053952.1| GJ24165 [Drosophila virilis]
gi|194152038|gb|EDW67472.1| GJ24165 [Drosophila virilis]
Length = 749
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/449 (28%), Positives = 206/449 (45%), Gaps = 79/449 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY QVE +P+L +PLAV Q N ++ NY AR KGVT+ M
Sbjct: 15 RTIIHLDMDYFYAQVEELRDPTLRNRPLAVQQKNC-----VVTCNYVARAKGVTKLMGVT 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA++ C ++ L V G+ D++ YR +++ +L ++ VE+ DE ++D+T +V
Sbjct: 70 EAQRLCSDLVL-----VNGE-DLAPYRLMSQKIFDLLLNYTPDVEKLGFDENFMDVTALV 123
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDF 182
R H A +Q RK + G +Y T+L +
Sbjct: 124 DLRQ---AHAAEAQ------------------RKPPI----GHIYPADGTALTACSCGCA 158
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
Q LAI I +EIR + + C AGIA+NK+LAKLV HKP +Q++L +
Sbjct: 159 QRLAIGTRIAQEIRDELHLRLGITCCAGIAYNKLLAKLVGSRHKPNQQTVLVSTYAEQFM 218
Query: 243 ANLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L+ + V +G K ++E ST+ +L++ ++ ++ F +TA+ L +A G D
Sbjct: 219 RELNDLHSVTGIGQKTQTLLLEA-GVSTVEQLQQCDMEFMRKKFGFETATKLRDLALGRD 277
Query: 302 HEPVNARLVSKSIG---CCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD-------- 350
V A K+I CK ++ DV+ + L + E++ +D
Sbjct: 278 GSSVRATGKPKTISVEDACK------TISVHTDVTDKFRMLLKRLMEQVAEDGRIPIAIK 331
Query: 351 LTLNK------------RRAQLLTVSF-TQETDGKVNSCSRSIALASYKLQDIVEVSMQV 397
+ L K ++A +L F T G+ C + LA L ++++ M++
Sbjct: 332 VVLRKFDSQKKTSHRETKQANILPSLFKTSVCPGETGVC--KVQLADGALDKLLKIIMRL 389
Query: 398 INKTNSAPPISDLTPP--LLFLGLSASKF 424
+ I DL P + +GL+ SKF
Sbjct: 390 FER------IVDLKKPFNITLVGLAFSKF 412
>gi|389601154|ref|XP_001564777.2| putative DNA polymerase eta [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322504921|emb|CAM38848.2| putative DNA polymerase eta [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 758
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 152/331 (45%), Gaps = 56/331 (16%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRH-MR 61
R IA +DMDCFY QVE +L P A++Q+ G IAVNY AR +GV R +
Sbjct: 2 RCIAHVDMDCFYAQVEAVRLGLDCRVTPFALLQW-----GNFIAVNYPARARGVKRFCLS 56
Query: 62 GDEAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVL-SEFS 104
DE ++ P++++ + + K + YR+A R++ A+L SE
Sbjct: 57 PDEVRRELPDVQMSHIATYAVGESEYCYPEDPRINTHKVSLEPYRHASRQIFAILRSEPG 116
Query: 105 NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW- 163
+V +A IDEAY+D+T+ + + AA + V P + R+A + W
Sbjct: 117 VMVGKAGIDEAYVDVTEAARRELAEVRAAAAGASLDPLVDVMEPSTRLIEDRRAEMEAWL 176
Query: 164 ------LGQVYSDTDTSL--------MENTEDF-------------QELAIAGVIVEEIR 196
L V+ + +L +E + F L A +V +R
Sbjct: 177 CARGTSLAAVFDEPMRALVRGECGAGLEGSRAFCVGADDPAYAERCLLLCAASRVVHRLR 236
Query: 197 AAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSMLYANLSIKKVRHLGG 255
+ ++ + CSAGIAHN+VLAK + HKP +Q+ +LP S L+ L + +R GG
Sbjct: 237 QRIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRGASALF-ELPLSGLRGFGG 295
Query: 256 KLGDEVVETLQCSTMLELEKFSLKQLQSHFE 286
KLG V ++ C + E + L L ++
Sbjct: 296 KLGAAV--SVVCGGVTECREAWLVPLAQLYK 324
>gi|146085845|ref|XP_001465373.1| putative DNA polymerase eta [Leishmania infantum JPCM5]
gi|134069471|emb|CAM67794.1| putative DNA polymerase eta [Leishmania infantum JPCM5]
Length = 786
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 150/326 (46%), Gaps = 56/326 (17%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRH-MR 61
R IA IDMDCFY QVE +L P A+VQ+ G IAVNY AR +GV R +
Sbjct: 34 RCIAHIDMDCFYAQVEAVRLGVDCRVTPFALVQW-----GSFIAVNYPARARGVRRFCLS 88
Query: 62 GDEAKQHCPEI-------------ELCRVPSVR---GKADISKYRNAGREVIAVL-SEFS 104
DE ++ P++ E C + R K + YR+A R++ A+L +E
Sbjct: 89 PDEVRRELPDVKMSHIATYAMGESEYCYPEAPRINTHKVSLEPYRHASRQIFAILRAEPG 148
Query: 105 NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW- 163
+V +A IDEAY+D+T+ + + + AA + P + R+A + W
Sbjct: 149 VVVGKAGIDEAYVDVTEAARQELAEVRAAAAGASLDPLADVMEPSTRLIEDRRAEMEAWF 208
Query: 164 ------LGQVYSDTDTSL--------MENTEDF-------------QELAIAGVIVEEIR 196
L V+ + +L +E + F L A +V +R
Sbjct: 209 SARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGVDDAAYAERCLLLCAASRVVHRLR 268
Query: 197 AAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSMLYANLSIKKVRHLGG 255
+ ++ + CSAGIAHN+VLAK + HKP +Q+ +LP S S L+ L + +R GG
Sbjct: 269 QRIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRSASALF-ELPLSGLRGFGG 327
Query: 256 KLGDEVVETLQCSTMLELEKFSLKQL 281
KLG V + C + E + L L
Sbjct: 328 KLGAAV--SAVCGGVTECREAWLVPL 351
>gi|209882993|ref|XP_002142930.1| DNA polymerase eta [Cryptosporidium muris RN66]
gi|209558536|gb|EEA08581.1| DNA polymerase eta, putative [Cryptosporidium muris RN66]
Length = 717
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 186/404 (46%), Gaps = 74/404 (18%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M RIIALIDMD F+ QV+ K+ KPL V+Q NT +IAVNY + +G+ R M
Sbjct: 71 MVPRIIALIDMDAFFTQVQHKICNIPKDKPLVVLQRNT-----VIAVNYPGKARGIKRGM 125
Query: 61 RGDEAKQHCPEIELCRVPSVRGKAD-----------ISKYRNAGREVIAVLSEFSNI--- 106
+ EA P++ + K + + YR A RE+ F NI
Sbjct: 126 KLQEALSIYPDLAVPETTYYNDKIEDNNNYNIKKISLEIYREASREI------FDNIANY 179
Query: 107 -----VERASIDEAYIDLTDVVHERMKSIGHIAASQ------------LSNTFVVGFGPD 149
++ +SIDEAYIDL++ + ++ I + + L+ ++ + +
Sbjct: 180 IPKCKIQISSIDEAYIDLSENIKLILEYIVLVLKGERSDYRGIEDLLCLTGEEILNYQLN 239
Query: 150 ---NNDEDARKAGVMEWLGQVYSDTDTS----LMENTED--------------FQELAI- 187
N+ E +M+ +++++ + S ++ N+ + F E+ I
Sbjct: 240 IVKNHKEMNFMKCLMDLFPELFNEKERSRIFLILFNSYNEKGKFSLFDIYGLKFDEILIL 299
Query: 188 -AGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLS 246
I+ +R +L + CSAGI+ NK+LAKLVC L KP QS+L ++ L
Sbjct: 300 LGATIIYRVRNRLLQDLNYTCSAGISINKMLAKLVCSLRKPNGQSVLLSRWINQYMGILP 359
Query: 247 IKKVRHLGGKLGDEVVETL----QCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
I K+R LGGKLG V E L S +L+ K +L +L F EK +LY RGID
Sbjct: 360 ILKLRLLGGKLGKLVSEKLPMVRMSSDLLQYNKGTLIKL---FGEKNGEYLYNTCRGIDL 416
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCER 346
E V +SI K F + L ++ W+ + E+ ER
Sbjct: 417 EAVIETQHYRSILSSKNF--YSGLDNLDEIFKWLHIFSSELSER 458
>gi|125774807|ref|XP_001358655.1| GA20473 [Drosophila pseudoobscura pseudoobscura]
gi|54638394|gb|EAL27796.1| GA20473 [Drosophila pseudoobscura pseudoobscura]
Length = 761
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 121/443 (27%), Positives = 202/443 (45%), Gaps = 67/443 (15%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY QVE +P+L K L + Q N ++ NY AR +GV + M
Sbjct: 15 RTIVHLDMDYFYAQVEEIRDPTLRTKALGIQQKNI-----LVTCNYVARARGVNKLMLIT 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA++ CP++ L V G+ D++ YR +++ +L ++ +VE+ DE ++D++ +V
Sbjct: 70 EAQRLCPDLVL-----VNGE-DLAPYRLMSQKIFDLLLNYTPMVEKLGFDENFMDVSALV 123
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDF 182
R H A +Q +G Y D T L +
Sbjct: 124 DLRQ---AHAAEAQQRPP----------------------VGHTYPDDGTPLTTCSCGCA 158
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
Q LAI I +EIR + + C AGIA+NK+LAKLV HKP +Q++L +
Sbjct: 159 QRLAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVLVSTYAEQFM 218
Query: 243 ANL-SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L IK+V +G K ++E ST+ +L++ + ++ F +TA+ L +A G D
Sbjct: 219 RELHDIKRVTGIGQKTQCLLLEA-GMSTVEQLQQCDMVVMRKKFGFETATKLRDLAFGRD 277
Query: 302 HEPVNARLVSKSIG---CCKRFPGKTCLATRQDVSHWIQELADEVCE--RLEDDLTLNKR 356
V K+IG CK P C + + L ++V E R+ + + R
Sbjct: 278 SSTVRPTGKPKTIGMEDACK--PISVCTDVEERFRMLLIRLIEQVAEDGRIPVAIKVVLR 335
Query: 357 RAQLLTVSFTQETDG--------KVNSCSRSIALASYKLQD-----IVEVSMQVINKTNS 403
+ S +ET K + C+ + ++ +L D ++++ M++ +
Sbjct: 336 KFDSQKKSSHRETKQANILPSLFKTSMCAGEMGVSKVQLADGAQDKLLKIVMRLFER--- 392
Query: 404 APPISDLTPP--LLFLGLSASKF 424
I DL+ P + +GL+ SKF
Sbjct: 393 ---IVDLSKPFNITLIGLAFSKF 412
>gi|195145368|ref|XP_002013668.1| GL24261 [Drosophila persimilis]
gi|194102611|gb|EDW24654.1| GL24261 [Drosophila persimilis]
Length = 759
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 121/443 (27%), Positives = 202/443 (45%), Gaps = 67/443 (15%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY QVE +P+L K L + Q N ++ NY AR +GV + M
Sbjct: 15 RTIVHLDMDYFYAQVEEIRDPTLRTKALGIQQKNI-----LVTCNYVARARGVNKLMLIT 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA++ CP++ L V G+ D++ YR +++ +L ++ +VE+ DE ++D++ +V
Sbjct: 70 EAQRLCPDLVL-----VNGE-DLAPYRLMSQKIFDLLLNYTPMVEKLGFDENFMDVSALV 123
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDF 182
R H A +Q +G Y D T L +
Sbjct: 124 DLRQ---AHAADAQQRPP----------------------VGHTYPDDGTPLTTCSCGCA 158
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
Q LAI I +EIR + + C AGIA+NK+LAKLV HKP +Q++L +
Sbjct: 159 QRLAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVLVSTYAEQFM 218
Query: 243 ANL-SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L IK+V +G K ++E ST+ +L++ + ++ F +TA+ L +A G D
Sbjct: 219 RELHDIKRVTGIGQKTQCLLLEA-GMSTVEQLQQCDMVVMRKKFGFETATKLRDLAFGRD 277
Query: 302 HEPVNARLVSKSIG---CCKRFPGKTCLATRQDVSHWIQELADEVCE--RLEDDLTLNKR 356
V K+IG CK P C + + L ++V E R+ + + R
Sbjct: 278 SSTVRPTGKPKTIGMEDACK--PISVCTDVEERFRMLLIRLIEQVAEDGRIPVAIKVVLR 335
Query: 357 RAQLLTVSFTQETDG--------KVNSCSRSIALASYKLQD-----IVEVSMQVINKTNS 403
+ S +ET K + C+ + ++ +L D ++++ M++ +
Sbjct: 336 KFDSQKKSSHRETKQASILPSLFKTSMCAGEMGVSKVQLADGAQDKLLKIVMRLFER--- 392
Query: 404 APPISDLTPP--LLFLGLSASKF 424
I DL+ P + +GL+ SKF
Sbjct: 393 ---IVDLSKPFNITLIGLAFSKF 412
>gi|21355641|ref|NP_649772.1| DNApol-iota, isoform A [Drosophila melanogaster]
gi|24644984|ref|NP_731214.1| DNApol-iota, isoform B [Drosophila melanogaster]
gi|7298996|gb|AAF54198.1| DNApol-iota, isoform A [Drosophila melanogaster]
gi|10440506|dbj|BAB15800.1| dpol-iota [Drosophila melanogaster]
gi|15291835|gb|AAK93186.1| LD29090p [Drosophila melanogaster]
gi|23175897|gb|AAN14307.1| DNApol-iota, isoform B [Drosophila melanogaster]
gi|220945914|gb|ACL85500.1| DNApol-iota-PA [synthetic construct]
gi|220955602|gb|ACL90344.1| DNApol-iota-PA [synthetic construct]
Length = 737
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 121/452 (26%), Positives = 203/452 (44%), Gaps = 85/452 (18%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY QVE +P+L K L + Q N ++ NY AR KGVT+ M
Sbjct: 15 RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVTKLMLIA 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA++ CP++ L V G+ D++ YR + + +L ++ +VE+ DE ++D+T +V
Sbjct: 70 EAQRICPDLVL-----VNGE-DLAPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV 123
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
R H+A + L + D G S+ D Q
Sbjct: 124 ELRQ---AHVAEALLRPPVGHTYPAD---------------GTPLSNCDCGCA------Q 159
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
LAI I +EIR + + C AGIA+NK+LAKLV H+P +Q++L +
Sbjct: 160 RLAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHEPNQQTVLVSTYAEQFMR 219
Query: 244 NLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L +K+V +G K ++E S++ +L++ + ++ F +TA+ L +A G D
Sbjct: 220 ELGDLKRVTGIGQKTQCLLLEA-GMSSVEQLQQCDMDVMRKKFGFETATRLRDLAFGRDT 278
Query: 303 EPVNARLVSKSIG---CCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD--------L 351
V K+IG CK ++ R DV + L + E++ +D +
Sbjct: 279 SLVRPSGKPKTIGMEDACKP------ISVRTDVEERFRMLLKRLVEQVAEDGRVPIAIKV 332
Query: 352 TLNK------------RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQD-----IVEVS 394
L K ++A +L F K + C ++ +L D ++++
Sbjct: 333 VLRKFDSQKKSSHRETKQANILPSLF------KTSMCPGETGVSKVQLADGAQDKLLKIV 386
Query: 395 MQVINKTNSAPPISDLTPP--LLFLGLSASKF 424
M++ + I D++ P + LGL+ SKF
Sbjct: 387 MRLFER------IVDMSKPFNITLLGLAFSKF 412
>gi|294658426|ref|XP_460761.2| DEHA2F09196p [Debaryomyces hansenii CBS767]
gi|202953120|emb|CAG89102.2| DEHA2F09196p [Debaryomyces hansenii CBS767]
Length = 770
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 175/401 (43%), Gaps = 62/401 (15%)
Query: 5 IIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
++A +D++ F+ QVE +LN + P+ Q+ + +IAV+Y AR G+ R
Sbjct: 44 VVAHVDLNAFFAQVEQVRLNLT-ADDPVVCAQWQS-----LIAVSYAARKFGIGRMDTIQ 97
Query: 64 EAKQHCPEIELCRVP----------SVRG-------KADISKYRNAGREVIAVLSEFSNI 106
A+Q CP I + +RG K + YR R+++ + E+ ++
Sbjct: 98 SARQKCPNIIIAHAAVFKKGDSYWSYIRGLPDRSVHKVSLDPYRRESRKIMNIFREYCDL 157
Query: 107 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNT-----FVVGFGPDNNDEDARKAGVM 161
VE+AS+DE ++D +++ + + ++ N + PD+ +
Sbjct: 158 VEKASVDECFLDFGRMIYYTLLQLFPDLGDEVENINSNLPSIPSTLPDS----------L 207
Query: 162 EWLGQVY---------SDTDTSLMENTEDFQE-----LAIAGVIVEEIRAAVLSKTQFHC 207
W+G++ SD D L N ++ + I ++ E+R V + +
Sbjct: 208 YWVGEIIKSEDEVPRNSDNDQDLKANDPRIRDWDDVCMLIGSQLLYEVRQQVFEELGYTT 267
Query: 208 SAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC 267
S G+ NK++AK+ G KP Q+I+ S++ N + +GGK GD +++ L+
Sbjct: 268 SGGLGKNKIIAKIAGGFLKPDNQTIIRTCSMNNFLKNFQLIDFNGMGGKTGDVIMQRLEV 327
Query: 268 -----STMLELEKFSLKQLQSHF--EEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRF 320
S FSL+ +Q F + A Y + RG + ++ R KS+ K F
Sbjct: 328 PPDVNSISFIRNNFSLEDIQKEFANDPPLAQKTYQMVRGNYRQELSLRTEIKSMMSRKNF 387
Query: 321 PGKTCLATRQDVSHWIQELADEVCERL--EDDLTLNKRRAQ 359
K + D WI+ A ++ RL DD +LN +Q
Sbjct: 388 LSKNPVNNIHDAYDWIKVFAGDLYGRLIELDDESLNLSMSQ 428
>gi|414884037|tpg|DAA60051.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 397
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 116/214 (54%), Gaps = 31/214 (14%)
Query: 96 VIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI------GHIAASQLSNTFVVGFGPD 149
V+A+L+ ERASIDE Y+DLTD E + G + SN ++G D
Sbjct: 179 VVAILAS-KGKCERASIDEVYLDLTDAAKEMLLQAPPDSPEGIFMEAAKSN--ILGLPAD 235
Query: 150 NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSA 209
++++ V WL Q +D L L +IV ++R VL +TQF CSA
Sbjct: 236 ASEKEKN---VRAWLCQSEADYQDKL---------LPCGAIIVAQLRVRVLEETQFTCSA 283
Query: 210 GIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCST 269
GIAHNK+LAKLV G+HKP +Q+++P SSV L A+L +KK++ LGGKLG + + L T
Sbjct: 284 GIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQLGGKLGSSLQDDLGVET 343
Query: 270 MLELEKFSLKQLQSHFEEKT----------ASWL 293
+ +L F+ ++LQ + T A+WL
Sbjct: 344 IGDLLSFTEEKLQEQYGVNTGHGMVAAFARAAWL 377
>gi|307203609|gb|EFN82638.1| DNA polymerase iota [Harpegnathos saltator]
Length = 581
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 152/319 (47%), Gaps = 41/319 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R + +D+DCFY QVE +P GKPL V Q N ++ NY AR GV + M+
Sbjct: 14 RTVIHLDVDCFYAQVEMLRHPEFEGKPLGVQQKNI-----VVTSNYLAREYGVKKCMQVQ 68
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA + CP + L V G+ D++ YR+ ++ +L +F+ +VER D+ ++D++ VV
Sbjct: 69 EALRLCPGLVL-----VNGE-DLTNYRHYSTKISDILHQFTPLVERLGFDDNFLDVSLVV 122
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED-- 181
+ +K P N+ E M+ ++ ++ + + +E+
Sbjct: 123 EKHLK-------------------PQNDSELDMSGSSMD---EILKESVSKIFGPSEEEC 160
Query: 182 ----FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQS 236
L IA + EIR + + CS GIAHNK+LAKL L+KP +Q+ I P S
Sbjct: 161 PCGCHVRLIIASKLAAEIRNRIFQELHLTCSVGIAHNKLLAKLAGSLNKPNQQTLIFPCS 220
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
+L A SI K+ +G K E++ + T+ +L + L+ L+ A L
Sbjct: 221 GPMLLSAMGSISKIPGVGQKTM-ELLLSNNIRTVDDLRRIPLQNLELKIGVDLARKLKDN 279
Query: 297 ARGIDHEPVNARLVSKSIG 315
A GID V +SIG
Sbjct: 280 AEGIDETAVKPSGKKQSIG 298
>gi|414884038|tpg|DAA60052.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 585
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 116/214 (54%), Gaps = 31/214 (14%)
Query: 96 VIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI------GHIAASQLSNTFVVGFGPD 149
V+A+L+ ERASIDE Y+DLTD E + G + SN ++G D
Sbjct: 179 VVAILAS-KGKCERASIDEVYLDLTDAAKEMLLQAPPDSPEGIFMEAAKSN--ILGLPAD 235
Query: 150 NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSA 209
++++ V WL Q +D L L +IV ++R VL +TQF CSA
Sbjct: 236 ASEKEKN---VRAWLCQSEADYQDKL---------LPCGAIIVAQLRVRVLEETQFTCSA 283
Query: 210 GIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCST 269
GIAHNK+LAKLV G+HKP +Q+++P SSV L A+L +KK++ LGGKLG + + L T
Sbjct: 284 GIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQLGGKLGSSLQDDLGVET 343
Query: 270 MLELEKFSLKQLQSHFEEKT----------ASWL 293
+ +L F+ ++LQ + T A+WL
Sbjct: 344 IGDLLSFTEEKLQEQYGVNTGHGMVAAFARAAWL 377
>gi|405120879|gb|AFR95649.1| eta DNA polymerase [Cryptococcus neoformans var. grubii H99]
Length = 704
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 165/394 (41%), Gaps = 73/394 (18%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R IA D+D Y Q E PL Q+ + IIAVNY AR G+ R +
Sbjct: 35 RTIAHCDIDAAYAQFEQVRLGLPDDIPLICAQWQS-----IIAVNYPARKYGIKRFTSIE 89
Query: 64 EAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEF--SN 105
+AK+ CP++ + V + R K + YR +++A+ E
Sbjct: 90 DAKKMCPQLRIQHVATYRNGESEAGYWDDVNPRTHKVSLDVYRRESLKILAIFKEKIPRG 149
Query: 106 IVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW-- 163
+E+ASIDEA++DLT +V ER+ + H S++ P+ D ++W
Sbjct: 150 EIEKASIDEAFLDLTPMVIERLLA-AHPYLSKVPED-----APNGLDSPLPPPPPIDWSN 203
Query: 164 LGQVY---SDTDTSLMENTEDFQE--------------------------LAIAGVIVEE 194
G V+ D S M + E QE L + G ++
Sbjct: 204 AGSVFPIDGKEDGSGMGHEEGRQEDEGSEDGDESDGRTSRSNRDSWEDWALCMGGELMSN 263
Query: 195 IRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLG 254
+R V + + C+A L KP Q+IL ++V + +R LG
Sbjct: 264 VREEVYLRLHYTCTA----------LCSAWKKPNNQTILRTAAVPAFLNDRDFTDIRSLG 313
Query: 255 GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSI 314
GKLG + + T+ ++ SL ++Q F E++ W+Y I RGIDH V R+ +KS+
Sbjct: 314 GKLGAAIAQEFGAKTVGDMLTVSLDEMQKKFGEESI-WVYNILRGIDHSEVTERVTTKSM 372
Query: 315 GCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
K + + + Q W+ LA E+ RL+
Sbjct: 373 LASKSI--RPAVTSPQQGHQWLSILAGELNVRLK 404
>gi|354546768|emb|CCE43500.1| hypothetical protein CPAR2_211440 [Candida parapsilosis]
Length = 670
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 192/434 (44%), Gaps = 74/434 (17%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
IAL+D++ F+ QVE P+ Q WK IIAV+Y AR G+ R + A
Sbjct: 46 IALVDLNAFFAQVETIRMGLTEDVPVVCQQ---WKA--IIAVSYAARKFGINRMDTVESA 100
Query: 66 KQHCPEIELCRVPSVRGKAD------------------ISKYRNAGREVIAVLSEFSNIV 107
+ CP + +C V K D + YR R+V+ ++ ++V
Sbjct: 101 RAKCPNL-VCAHAGVYKKGDRHWTYEEGQPDPVNHKVSLDNYRRESRKVLRIIQSKFDLV 159
Query: 108 ERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQV 167
E+AS+DE+YIDL ++E + N + P +D ++W G V
Sbjct: 160 EKASVDESYIDLGRPIYEILLEKFPELNINAGNDESLPSIPKTLPQD------IQWHGTV 213
Query: 168 Y-SDTDTSLMENTE-----DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
S+ + + +N + D+ + LAI + ++R A+ + + SAG+A NK++AK
Sbjct: 214 IESEREIADPQNVQPPQIFDWDDVVLAIGSQFLLDLRQAIYDELGYTTSAGLARNKLVAK 273
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC-----STMLELE 274
L G KP Q+I+ +++ +N + V +GGKLG++++ + S E
Sbjct: 274 LSGGFKKPDDQTIVRNCALNRFLSNFELTDVTGMGGKLGEQLINKFEVPPDRNSIAFIRE 333
Query: 275 KFSLKQLQSHFEE--KTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDV 332
++ ++ E + A LY I RG+ + R+ KS+ K F G T D
Sbjct: 334 NYTFDMVKQELREDAELALKLYQIVRGLYSSELTDRIEIKSMMSTKNFLGSKGW-TLADA 392
Query: 333 SHWIQELADEVCERLED------DLTLNK---------RRAQLLTV-----SFTQETDGK 372
W+ + ++ RL D +L+L K RR + +T+ SF ++T
Sbjct: 393 YDWLTVFSGDLSNRLTDLDNESMELSLTKMSNKEKGVLRRPKTITIGVRSLSFVRQT--- 449
Query: 373 VNSCSRSIALASYK 386
R ++++ YK
Sbjct: 450 -----RQMSISFYK 458
>gi|344245022|gb|EGW01126.1| DNA polymerase iota [Cricetulus griseus]
Length = 670
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 177/371 (47%), Gaps = 49/371 (13%)
Query: 23 NPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRG 82
NP L KPL V Q ++ NYEAR GV + M +AK+ CP++ L V G
Sbjct: 4 NPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMNVRDAKEKCPQLVL-----VNG 53
Query: 83 KADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIAASQLSN 140
+ D+S+YR +V +L EFS +VER DE ++DLT++V +R++ + I + +S
Sbjct: 54 E-DLSRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLPRDEILSVTVS- 111
Query: 141 TFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 200
G +Y++ +L T L + I EIR A+
Sbjct: 112 ------------------------GHIYNNQSVNLHNITH--VRLVVGSQIAAEIREAMY 145
Query: 201 SKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSMLYANLSIKKVRHLGGKLGD 259
+ Q AG+A NK+LAKLV G+ KP +Q++ LP+S ++++ IK++ +G K
Sbjct: 146 HQLQLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQDLIHSLNHIKEMPGIGYKTAK 205
Query: 260 EVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKR 319
+E L +++ +L+ FS+K L+ A + ++ G D+ PV +S
Sbjct: 206 R-LEVLGINSVRDLQTFSVKTLEKELGISVAQRIQKLSFGEDNSPVTPSGPPQSFSEEDT 264
Query: 320 FPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRS 379
F K C ++ + I+EL + +R+ D R+ + + + ++ N SR
Sbjct: 265 F--KKC-SSEAEAKTKIEELLSSLLKRVCHD----GRKPHTIRLVIRRYSEKHCNRESRQ 317
Query: 380 IALASYKLQDI 390
+ S+ +Q +
Sbjct: 318 CPIPSHVIQKL 328
>gi|195108869|ref|XP_001999015.1| GI23309 [Drosophila mojavensis]
gi|193915609|gb|EDW14476.1| GI23309 [Drosophila mojavensis]
Length = 749
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 124/449 (27%), Positives = 201/449 (44%), Gaps = 79/449 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY QVE NPSL +PLAV Q N ++ NY AR +GVT+ M
Sbjct: 15 RTIIHLDMDYFYAQVEELRNPSLRTQPLAVQQKNI-----VVTCNYVARARGVTKLMLVV 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ C ++ L V G+ D++ YR +++ +L ++ VE+ DE Y+D+T +V
Sbjct: 70 EAKRLCADLVL-----VNGE-DLAPYRLMSQKIFDLLLNYTPDVEKLGFDENYMDVTSLV 123
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDF 182
R H A +Q F P +G +Y T L +
Sbjct: 124 ELRQ---AHAADAQ--------FKPP--------------VGHIYPADGTPLTACSCGCA 158
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
Q LAI I +EIR + + C AGIA+NK+LAKLV HKP +Q++L +
Sbjct: 159 QRLAIGTRIAQEIRDELHLRLGITCCAGIAYNKLLAKLVGSRHKPNQQTVLVSTYAEQFM 218
Query: 243 ANLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L+ + V +G K +++ +++ +L+ + ++ F +TA+ L +A G D
Sbjct: 219 RELNDLHSVTGIGQK-TQTLLQEAGITSVEQLQNCDMDFMRKKFGFETATKLRDLALGRD 277
Query: 302 HEPVNARLVSKSIG---CCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD-------- 350
V K+I CK ++ DV+ + L + E++ +D
Sbjct: 278 ASCVRPTGKPKTISVEDACK------TISVHTDVTDKFRMLLKRLMEQVAEDGRIPIAIK 331
Query: 351 LTLNK------------RRAQLLTVSFTQET-DGKVNSCSRSIALASYKLQDIVEVSMQV 397
+ L K ++A +L F G+ C + LA L ++++ M++
Sbjct: 332 VVLRKFDPQKKSSHRETKQANILPSLFKASVCAGETGVC--KVQLADGALDKLLKIIMRL 389
Query: 398 INKTNSAPPISDLTPP--LLFLGLSASKF 424
+ I DL P + +GL+ SKF
Sbjct: 390 FER------IVDLNKPFNITLIGLAFSKF 412
>gi|260941910|ref|XP_002615121.1| hypothetical protein CLUG_05136 [Clavispora lusitaniae ATCC 42720]
gi|238851544|gb|EEQ41008.1| hypothetical protein CLUG_05136 [Clavispora lusitaniae ATCC 42720]
Length = 748
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/418 (23%), Positives = 180/418 (43%), Gaps = 79/418 (18%)
Query: 6 IALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
I LID++ F+ Q E +L ++ P+ Q+ + +IAV+Y AR G+ R
Sbjct: 44 IGLIDLNAFFAQCEQIRLGKTID-DPVVCCQWQS-----LIAVSYAARKYGIGRMDSLQS 97
Query: 65 AKQHCPEIELCRVPSVRG-----------------KADISKYRNAGREVIAVLSEFSNIV 107
A++ CP + + R K + YR R++I VL ++V
Sbjct: 98 AREKCPGLIVGHAAVFRKGEAHWQYLDKLPDQSLHKVSLDPYRRESRKIIKVLKRECDLV 157
Query: 108 ERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGV-MEWLGQ 166
E+AS+DE Y+D V+ +M + F+ GPD W+G
Sbjct: 158 EKASVDECYLDFGRAVYAKMVE---------AFPFLESVGPDEPLPPVPSLPSDFYWVGG 208
Query: 167 VYSDTDTSLMEN----------------------------------TEDFQELAI--AGV 190
V ++ +T+ ++ +D+ ++ I A
Sbjct: 209 VQTEEETTKAQDEPAQSETNGEELVQEEKLGLNDLKKPKQPENSPPVQDWDDVCILVASQ 268
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
++ + R A+ S+ ++ S G+ ++K +AKL G KP Q+++P S +++ +
Sbjct: 269 LLYKARCAIYSELKYTTSGGVGNSKTVAKLAGGFIKPDFQTVVPPRSAKAFFSHFHLSDF 328
Query: 251 RHLGGKLGDEVVETLQ----CSTMLEL-EKFSLKQLQSHF--EEKTASWLYYIARGIDHE 303
+GGK G+ V++ L C+++ + E + L ++++ F E + A +Y + RGI H+
Sbjct: 329 TMMGGKTGELVLQKLSVPPDCNSIEYIRENWPLDRIEAQFPSEPQLARKVYELVRGIHHQ 388
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE--DDLTLNKRRAQ 359
+ R KS+ K F K + T D WI+ ++ RL DD +N +Q
Sbjct: 389 ELKLRTDVKSMMSRKNFTAKNPVNTLSDAFDWIKVFVGDLYGRLVELDDENMNLSASQ 446
>gi|195453784|ref|XP_002073941.1| GK14382 [Drosophila willistoni]
gi|194170026|gb|EDW84927.1| GK14382 [Drosophila willistoni]
Length = 735
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 121/453 (26%), Positives = 203/453 (44%), Gaps = 87/453 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY QVE +PSL KPL + Q N ++ NY AR KGV + M
Sbjct: 15 RTIVHLDMDYFYAQVEEIRDPSLRQKPLGIQQKNI-----VVTCNYVARAKGVHKLMLIS 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ L V G+ D++ YR +++ +L ++ VE+ DE ++D++ +V
Sbjct: 70 DAQRRCPDLVL-----VNGE-DLAPYRLMSQKIFDLLLNYTPAVEKLGFDENFMDVSALV 123
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED-F 182
R E A +A +G +Y D T L +
Sbjct: 124 ELR-------------------------QEHAAEAQEKPPVGHLYPDDGTLLTDCLCGCA 158
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
Q LAI I +EIR + + C AGIA+NK+LAKLV HKP +Q++L S
Sbjct: 159 QRLAIGSRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSRHKPNQQTVLVSSHAEEFM 218
Query: 243 ANLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L+ +++V +G K +++ +++ +L++ + ++ F +TA+ L +A G D
Sbjct: 219 RELNDLQRVTGIGQK-TLSLLQEAGINSVEQLQQCDMDMMRKKFGFETATKLRDLAYGRD 277
Query: 302 HEPVNARLVSKSIG---CCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD-------- 350
V KSIG CK ++ DV + L + E++ +D
Sbjct: 278 VSAVRPTGKPKSIGMEDACKP------ISISSDVEDKFRMLLMRLVEQVAEDGRIPIAIK 331
Query: 351 LTLNK------------RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQD-----IVEV 393
+ L K ++A +L F K + CS +L D ++++
Sbjct: 332 VVLRKFDAQKKSSHRETKQANILPSLF------KTSMCSGETGTGRVQLADGAQEKLLKI 385
Query: 394 SMQVINKTNSAPPISDLTPP--LLFLGLSASKF 424
M++ + I DL+ P + +GL+ SKF
Sbjct: 386 IMRLFER------IVDLSKPFNITLIGLAFSKF 412
>gi|195037641|ref|XP_001990269.1| GH18329 [Drosophila grimshawi]
gi|193894465|gb|EDV93331.1| GH18329 [Drosophila grimshawi]
Length = 758
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 131/456 (28%), Positives = 202/456 (44%), Gaps = 93/456 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD +Y QVE +P+L +PLAV Q N ++ NY AR +GVT+ M
Sbjct: 15 RTIIHLDMDYYYAQVEELRDPTLRTRPLAVQQKNF-----VVTCNYVARARGVTKLMLVT 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA+ CP++ L V G+ D+ YR +++ +L ++ VE+ DE Y+D+T +V
Sbjct: 70 EAQILCPDLVL-----VLGE-DLVPYRLMSQKIFDLLLNYTPDVEKLGFDENYMDVTALV 123
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDF 182
R H A +Q RK + G VY T L +
Sbjct: 124 DLRQ---AHAADAQ------------------RKPAI----GHVYPADGTPLTACSCGCA 158
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
Q LAI I +EIR + + C AGIA+NK+LAKLV HKP +Q++L + Y
Sbjct: 159 QRLAIGTRIAQEIRDELHLRLGITCCAGIAYNKLLAKLVGSRHKPNQQTVLVST-----Y 213
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS--------HFEEKTASWLY 294
A + +R LGG + + +LE S++QLQ F +TA+ L
Sbjct: 214 AE---QFMRELGGLHSITGIGQKTQTLLLEAGVVSVEQLQQCDMEFMRKKFGFETATKLR 270
Query: 295 YIARGIDHEPVNARLVSKSIG---CCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD- 350
+A G D V KSI CK ++ DV+ + L + E++ +D
Sbjct: 271 DLALGRDASSVRVTGKPKSISVEDACK------TISVHTDVTDKFRMLLKRLMEQVAEDG 324
Query: 351 -------LTLNK------------RRAQLLTVSF-TQETDGKVNSCSRSIALASYKLQDI 390
+ L K ++A +L F T G+ C + LA L +
Sbjct: 325 RIPIAIKVVLRKFDMQKKSSHRETKQANILPSLFRTSVCAGETGVC--KVQLADGALDKL 382
Query: 391 VEVSMQVINKTNSAPPISDLTPP--LLFLGLSASKF 424
+++ M++ + I DL+ P + +GL+ SKF
Sbjct: 383 LKIIMRLFER------IVDLSKPFNITLIGLAFSKF 412
>gi|157868886|ref|XP_001682995.1| putative DNA polymerase eta [Leishmania major strain Friedlin]
gi|68223878|emb|CAJ04131.1| putative DNA polymerase eta [Leishmania major strain Friedlin]
Length = 786
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 148/326 (45%), Gaps = 56/326 (17%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRH-MR 61
R IA +DMDCFY QVE +L P A+VQ+ G IAVNY AR +GV R +
Sbjct: 34 RCIAHMDMDCFYAQVEAVRLGVDCRVTPFALVQW-----GSFIAVNYPARARGVRRFCLS 88
Query: 62 GDEAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVL-SEFS 104
DE ++ P++ + + + K + YR+A R++ A+L +E
Sbjct: 89 PDEVRRELPDVRMSHIATYAMGESEYCYPEAPHINTHKVSLEPYRHASRQIFAILRAEPG 148
Query: 105 NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW- 163
+V +A IDEAY+D+T+ + + AA + P + R+A + W
Sbjct: 149 VVVGKAGIDEAYVDVTEAARRELAEVRAAAAGASLDPLEDVMEPSTRLIEDRRAEMEAWL 208
Query: 164 ------LGQVYSDTDTSL--------MENTEDF-------------QELAIAGVIVEEIR 196
L V+ + +L +E + F L A +V +R
Sbjct: 209 SARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGADDAAYAERCLLLCAASRVVHRLR 268
Query: 197 AAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSMLYANLSIKKVRHLGG 255
+ ++ + CSAGIAHN+VLAK + HKP +Q+ +LP S S L+ L + +R GG
Sbjct: 269 QRIYAELHYDCSAGIAHNRVLAKCISATHKPNQQTLLLPDRSASALF-ELPLSGLRGFGG 327
Query: 256 KLGDEVVETLQCSTMLELEKFSLKQL 281
KLG V + C + E + L L
Sbjct: 328 KLGAAV--SAVCGGVTECREAWLVPL 351
>gi|148677620|gb|EDL09567.1| polymerase (DNA directed), iota, isoform CRA_a [Mus musculus]
gi|148677623|gb|EDL09570.1| polymerase (DNA directed), iota, isoform CRA_a [Mus musculus]
Length = 679
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 184/395 (46%), Gaps = 51/395 (12%)
Query: 17 QVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCR 76
QVE NP L +PL V Q ++ NYEAR GV + M +AK+ CP++ L
Sbjct: 3 QVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLMNVRDAKEKCPQLVL-- 55
Query: 77 VPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAAS 136
V G+ D+S+YR +V +L EFS VER DE ++DLT++V +R++ + +
Sbjct: 56 ---VNGE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSE 108
Query: 137 QLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIR 196
++ + V G VY++ +L + L + I E+R
Sbjct: 109 EVPSVTV--------------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMR 146
Query: 197 AAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSMLYANLSIKKVRHLGG 255
A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S ++++ IK++ +G
Sbjct: 147 EAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGY 206
Query: 256 KLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIG 315
K +E L +++ +L+ F +K L+ A + ++ G D PV +S
Sbjct: 207 KTAKR-LEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVTPSGPPQSFS 265
Query: 316 CCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNS 375
F K C ++ + I+EL + R+ D R+ + + + +D N
Sbjct: 266 EEDTF--KKC-SSEVEAKAKIEELLSSLLTRVCQD----GRKPHTVRLVIRRYSDKHCNR 318
Query: 376 CSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
SR + S+ +Q + +S PP+ D+
Sbjct: 319 ESRQCPIPSHVIQKL------GTGNHDSMPPLIDI 347
>gi|115738160|ref|XP_785451.2| PREDICTED: DNA polymerase iota-like [Strongylocentrotus purpuratus]
Length = 642
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 145/308 (47%), Gaps = 40/308 (12%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR I ID+DCFY QVE NP+L KPL + Q N ++ NY AR +GV++
Sbjct: 64 SRTIVHIDLDCFYAQVEMLRNPTLRDKPLGIQQKNI-----VVTTNYVARARGVSKLSYI 118
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EA CP++ L V G+ D++ YR +V +L +F +VER DE ++D+T +
Sbjct: 119 KEALIKCPDLVL-----VSGE-DLTNYRETSTKVTELLEQFCPLVERLGFDENFMDVTKL 172
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVY-SDTDTSLMENTED 181
V R+ S D++K + +G Y SD +
Sbjct: 173 VESRLTST-----------------------DSKK---LVHIGHSYESDAQIATQCQCGC 206
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-PQSSVSM 240
L + I +E+R + SK AG+A NK+LAKLV HKP Q++L + + S
Sbjct: 207 RDRLTMGSHIAKEMRDTLKSKLGLTSCAGVATNKLLAKLVGAHHKPNDQTVLFSEWTDSF 266
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ ++++ +G G + ++ + + EL + L F ++ A + +A G+
Sbjct: 267 IQTFTKLRQIPGIGHSSGKK-LKGMGIQNLEELRPTPVSTLADQFGKQQAETMLRLAHGV 325
Query: 301 DHEPVNAR 308
D PV ++
Sbjct: 326 DDTPVVSK 333
>gi|68469717|ref|XP_721110.1| hypothetical protein CaO19.8485 [Candida albicans SC5314]
gi|46443012|gb|EAL02297.1| hypothetical protein CaO19.8485 [Candida albicans SC5314]
Length = 640
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 175/385 (45%), Gaps = 58/385 (15%)
Query: 6 IALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
IALID++ F+ QVE +LN + + P+ Q+N+ +IAV+Y +R G+TR
Sbjct: 49 IALIDLNAFFAQVEQIRLNLT-NQDPVVCAQWNS-----VIAVSYASRKFGITRMDTIAS 102
Query: 65 AKQHCPEIELCR----------------VPSV-RGKADISKYRNAGREVIAVLSEFSNIV 107
K CP + + +P++ + K + YR R+++ V+ + ++
Sbjct: 103 CKSKCPNVIIAHAAVYKKGESHWAYVEGLPAINKHKVSLDPYRRESRKILRVIGKSFDLT 162
Query: 108 ERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDA---------RKA 158
E+AS+DE YIDL +++R+ + QLS G +N E++
Sbjct: 163 EKASVDECYIDLGREIYKRLIDL----FPQLSR------GSRDNPENSYANLPLIPPALP 212
Query: 159 GVMEWLGQVYS-------DTDTSLMENTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSA 209
++W G++ + D D ED+ ++ I I+ E+R + + + SA
Sbjct: 213 LNLKWEGEIINTEKEKSEDNDIVSPPVIEDWDDICFIIGSQILLEVRKDIFEELGYTTSA 272
Query: 210 GIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC-- 267
G+A K +AKL G KP Q+I+ S+++ N + V +GGKLG+ ++ +
Sbjct: 273 GLARTKQVAKLAAGFKKPDAQTIIRNSAINSFLTNFELTDVTGMGGKLGESIINKVNVPP 332
Query: 268 ---STMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKT 324
S E FS ++ + +Y I RGI+ + + + KS+ K F
Sbjct: 333 QINSISFIRENFSDASIKEKLGGELGLKVYNIVRGINAIELQSTIEVKSMTSTKNFTS-F 391
Query: 325 CLATRQDVSHWIQELADEVCERLED 349
++ D W++ A ++ RL D
Sbjct: 392 VISNLFDAYDWLKVFAGDLHNRLID 416
>gi|241951166|ref|XP_002418305.1| DNA polymerase eta, putative [Candida dubliniensis CD36]
gi|223641644|emb|CAX43605.1| DNA polymerase eta, putative [Candida dubliniensis CD36]
Length = 642
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 175/387 (45%), Gaps = 58/387 (14%)
Query: 5 IIALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
+IALID++ F+ QVE +LN + P+ Q+N+ +IAV+Y R G+TR
Sbjct: 48 VIALIDLNAFFAQVEQIRLNLT-DQDPVVCAQWNS-----VIAVSYACRKFGITRMDSIA 101
Query: 64 EAKQHCPEIELCR----------------VPSVRG-KADISKYRNAGREVIAVLSEFSNI 106
K CP + + +P++ K + YR R+++ ++S+ ++
Sbjct: 102 SCKSKCPNVIIAHAAVYKKGESHWAYIEGLPTINNHKVSLDPYRRESRKILRIISKSFDL 161
Query: 107 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGV------ 160
E+AS+DE YIDL +++R+ + QLS + DN + +
Sbjct: 162 TEKASVDECYIDLGREIYKRLIDL----FPQLSRS-----SRDNPENGYANLPLIPSILP 212
Query: 161 --MEWLGQVYSDTDTSLMEN---------TEDFQELA--IAGVIVEEIRAAVLSKTQFHC 207
++W G++ + M+N ED+ ++ I I+ E+R + ++ +
Sbjct: 213 LDLKWEGEIINSEKEKTMDNGNSSPPPPVIEDWDDICFIIGSQILLEVRKDIFAELGYTT 272
Query: 208 SAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC 267
SAG+A K +AKL G KP Q+I+ S+++ N + V +GGKLG+ ++ +
Sbjct: 273 SAGLARTKQVAKLAAGFKKPDAQTIIRNSAINSFLTNFELTDVTGMGGKLGESIINKINV 332
Query: 268 -----STMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPG 322
S E FS+ ++ + +Y I RG + + + + KS+ K F
Sbjct: 333 PPQINSISFIRENFSIDSIKEKLGGELGLKVYNICRGTNAIELQSLIEVKSMTSTKNFTS 392
Query: 323 KTCLATRQDVSHWIQELADEVCERLED 349
+ + D W++ A ++ RL D
Sbjct: 393 FS-VNNLFDAYDWLKVFAGDLHNRLID 418
>gi|448513234|ref|XP_003866901.1| Rad32 protein [Candida orthopsilosis Co 90-125]
gi|380351239|emb|CCG21463.1| Rad32 protein [Candida orthopsilosis Co 90-125]
Length = 671
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 129/508 (25%), Positives = 220/508 (43%), Gaps = 91/508 (17%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
IAL+D++ F+ QVE P+ Q WK IIAV+Y AR G+ R A
Sbjct: 46 IALVDLNAFFAQVETIRLGLTEDDPVVCQQ---WKA--IIAVSYAARKYGINRMDTVASA 100
Query: 66 KQHCPEIELCRVPSV--RG----------------KADISKYRNAGREVIAVLSEFSNIV 107
++ CP + +C V +G K + YR R++I ++ + V
Sbjct: 101 REKCPNV-VCAHAGVYKKGSKNWTYEEGQPDPAHHKVSLDNYRRESRKIIRLIQSKFDFV 159
Query: 108 ERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW 163
E+AS+DE+YIDL V+ E+ + S S+ V+ PD +D ++W
Sbjct: 160 EKASVDESYIDLGRPVYGTLLEKFPQL-KCRISDASDDEVLPSIPDKLPQD------IQW 212
Query: 164 LGQVYSDTDTSLMENTEDFQE----------LAIAGVIVEEIRAAVLSKTQFHCSAGIAH 213
G + + + +D Q LAI ++ ++R ++ + + SAG+A
Sbjct: 213 YGTIIESEKE--LADPQDIQAPQIFDWDDVVLAIGSELLLDLRQSIHDELGYTTSAGLAR 270
Query: 214 NKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC-----S 268
NK++AKL G KP Q+I+ +++ N + V +GGKLG++++ S
Sbjct: 271 NKLVAKLSGGFKKPDDQTIVRNCALNRFLNNFELTDVTGMGGKLGEQLINRFGVPPDRNS 330
Query: 269 TMLELEKFSLKQLQSHFEE--KTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCL 326
E +SL ++ +E A LY I RG+ + R+ KS+ K F G T
Sbjct: 331 IAFIRENYSLSSVKEEIKEDPDLALKLYKIVRGLHPSELTDRVEIKSMMSTKNFLG-TRN 389
Query: 327 ATRQDVSHWIQELADEVCERLED------DLTLNK---------RRAQLLTV-----SFT 366
T D W+ + ++ RL D +L+L K RR + +T+ SF
Sbjct: 390 WTLADAYDWLTVFSGDLSNRLTDLDNESMELSLTKMSNKEKGVIRRPKTITIGVRSASFV 449
Query: 367 QET-------DGKVNSCSRSIALASYK-LQDIVE--VSMQVINKTNSAPPISDLTPPLLF 416
++T +++ SI ++ L++ +E ++ ++N SA + + P L+
Sbjct: 450 RQTRQMPISFHKEIDKMRESIKNCGFQLLREYLEHNSNITILNGGKSARELYNSDPKLVR 509
Query: 417 ------LGLSASKFSPLGSHPSIQQFFK 438
L L+ S F L I+ F K
Sbjct: 510 IMDMHNLSLTISNFVALNDSALIESFAK 537
>gi|357616687|gb|EHJ70343.1| DNA polymerase IV [Danaus plexippus]
Length = 569
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 198/417 (47%), Gaps = 66/417 (15%)
Query: 24 PSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGK 83
P L PL + Q N ++ NYEAR G+ + M +A + CP ++L + G+
Sbjct: 5 PELRCFPLGIQQKNI-----VVTSNYEARKYGIRKCMLVSDALKVCPNLKL-----INGE 54
Query: 84 ADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFV 143
D+ YR A ++ VL F VE+ +DE +ID+T++V ER+K++ ++ + +S
Sbjct: 55 -DLHDYRAASNKIFTVLQTFKCPVEKLGMDENFIDVTNIVQERIKNV-NLKSITVS---- 108
Query: 144 VGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 203
G +Y++++ + L +A I E+R + +
Sbjct: 109 ---------------------GHLYTESNAECVCGCH--ARLKVASQIASEMRHKIYDEL 145
Query: 204 QFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSMLYANLSIKKVRHLGGKLGDEVV 262
F AGIAHNK+LAKL+C L+KP Q +I P+ VS + S++ + +G K + ++
Sbjct: 146 GFTTCAGIAHNKLLAKLICPLNKPNDQTTIYPEHGVSFMSTLQSVRSIPSIGSKTTEALI 205
Query: 263 ETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPG 322
+ T+ +L++ S++ L+ HF A L ++ G D+ P+ +SIG F
Sbjct: 206 SQ-KIITVRDLQEVSIEVLKKHFSSDMAVRLKNLSVGEDNTPIKQTGRPQSIGLEDSF-- 262
Query: 323 KTCLATRQDVSHWIQELADEVCERLEDD--------LTLNKRRAQLLTVSFTQETDGKVN 374
KT ++ + +V Q L + + +D +TL K+ + L+ S + +V+
Sbjct: 263 KT-VSVKSEVEEKFQALLQRLLILVREDGRIPVSLRVTLRKKDVKRLS-SHRESRQCQVS 320
Query: 375 SCSRSIALASYKLQD-----IVEVSMQVINKTNSAPPISDLTPP--LLFLGLSASKF 424
+I + + D ++ + M++ NK + DL+ P L +GL+ +KF
Sbjct: 321 PSIFTINNGTLTVTDSGRQKLMSIIMRLFNK------LIDLSKPFHLTLVGLAFTKF 371
>gi|68469958|ref|XP_720989.1| hypothetical protein CaO19.866 [Candida albicans SC5314]
gi|46442884|gb|EAL02170.1| hypothetical protein CaO19.866 [Candida albicans SC5314]
gi|238882146|gb|EEQ45784.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 640
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 174/385 (45%), Gaps = 58/385 (15%)
Query: 6 IALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
IALID++ F+ QVE +LN + P+ Q+N+ +IAV+Y +R G+TR
Sbjct: 49 IALIDLNAFFAQVEQIRLNLT-DQDPVVCAQWNS-----VIAVSYASRKFGITRMDTIAS 102
Query: 65 AKQHCPEIELCR----------------VPSV-RGKADISKYRNAGREVIAVLSEFSNIV 107
K CP + + +P++ + K + YR R+++ V+ + ++
Sbjct: 103 CKSKCPNVIIAHAAVYKKGESHWAYVEGLPAINKHKVSLDPYRRESRKILRVIGKSFDLT 162
Query: 108 ERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDA---------RKA 158
E+AS+DE YIDL +++R+ + QLS G +N E++
Sbjct: 163 EKASVDECYIDLGREIYKRLIDL----FPQLSR------GSRDNPENSYANLPLIPPTLP 212
Query: 159 GVMEWLGQVYS-------DTDTSLMENTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSA 209
++W G++ + D D ED+ ++ I I+ E+R + + + SA
Sbjct: 213 LNLKWEGEIINTEKEKSEDNDIVSPPVIEDWDDICFIIGSQILLEVRKDIFEELGYTTSA 272
Query: 210 GIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC-- 267
G+A K +AKL G KP Q+I+ S+++ N + V +GGKLG+ ++ +
Sbjct: 273 GLARTKQVAKLAAGFKKPDAQTIIRNSAINSFLTNFELTDVTGMGGKLGESIINKVNVPP 332
Query: 268 ---STMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKT 324
S E FS ++ + +Y I RGI+ + + + KS+ K F
Sbjct: 333 QINSISFIRENFSDASIKEKLGGELGLKVYNIVRGINAIELQSTIEVKSMTSTKNFTS-F 391
Query: 325 CLATRQDVSHWIQELADEVCERLED 349
++ D W++ A ++ RL D
Sbjct: 392 VISNLFDAYDWLKVFAGDLHNRLID 416
>gi|260783390|ref|XP_002586758.1| hypothetical protein BRAFLDRAFT_134446 [Branchiostoma floridae]
gi|229271883|gb|EEN42769.1| hypothetical protein BRAFLDRAFT_134446 [Branchiostoma floridae]
Length = 488
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 155/352 (44%), Gaps = 55/352 (15%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
TSR+I ID+DCFY QVE +PSL KPL GG + V++ +T
Sbjct: 1 TSRVIVHIDVDCFYAQVEMIRDPSLRDKPL--------DGGKM--VSFLQVFCDITC--- 47
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
G ++ +VP K +Y +V L +FS +VER DE ++D+T+
Sbjct: 48 GYFCVHFIINLQQSKVPITNDK-QTDEYVTYPFQVTNTLQKFSPLVERLGFDENFVDVTE 106
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
V R+KS F P N G ++ + + E
Sbjct: 107 TVEARVKS---------------AFSPQLN-------------GHIFPEIEI----EDER 134
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+ LA I EIR A+ S C AGIAHNK+LAKLV G HKP +Q+ L V L
Sbjct: 135 HKRLACGSQIAAEIREALHSDLGITCCAGIAHNKLLAKLVAGQHKPNQQTSLLPGGVGKL 194
Query: 242 YANLSIKKVRHLGGKLGDEV---VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
L K R++ G +G ++TL ST+ EL+ LQ+ F +TA + + R
Sbjct: 195 MGTL--KTARNIPG-IGSRTFKRLQTLGISTVQELQDAPADTLQAEFGSQTAQVMQQLCR 251
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
G+D PV ++I F K C + QD + L + +RL+ D
Sbjct: 252 GVDPSPVTPTGPPQTISDEDSF--KKC-GSFQDAKKRMTGLLQSLMKRLKGD 300
>gi|332028674|gb|EGI68708.1| DNA polymerase iota [Acromyrmex echinatior]
Length = 576
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 155/316 (49%), Gaps = 33/316 (10%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
S+ I +D+DCFY QVE +P L G+PL V Q N ++ NY AR G+ + M
Sbjct: 12 SKTIIHLDVDCFYAQVEMINHPELEGRPLGVQQKNI-----VVTSNYLAREYGIKKCMSV 66
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EA + CPE+ L V G+ D++ YR+ ++ +L +F+ +VER D+ ++D+T +
Sbjct: 67 QEALRLCPELAL-----VNGE-DLTNYRHYSTKISEILHQFTPLVERLGFDDNFLDVTSI 120
Query: 123 VHERMKSIG--HIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
V +++KS + S S F ED ++ L +++ ++
Sbjct: 121 VEKQLKSQNDTELDMSNSSTEF----------EDLKE------LSKIFGPSEEECPCGCH 164
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
L I I +IR + + CSAGIAHNK++AKL L+KP +Q+++ S +
Sbjct: 165 --TRLIIGSKIAADIRNRIYEELHLTCSAGIAHNKLVAKLAGSLNKPNQQTLIFPCSGPL 222
Query: 241 LYANLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
L + + + K+ +G K E++ + T+ ++ + L+ L+ A L A G
Sbjct: 223 LLSTIGCVSKIPGVGQK-TTELLLSNNIRTVDDIRRIPLENLELKIGIDLARRLKDNAEG 281
Query: 300 IDHEPVNARLVSKSIG 315
ID V +SIG
Sbjct: 282 IDETAVKPSGKKQSIG 297
>gi|149064585|gb|EDM14788.1| polymerase (DNA directed), iota (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 669
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 174/369 (47%), Gaps = 45/369 (12%)
Query: 23 NPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRG 82
NP L KPL V Q ++ NYEAR GV + M +AK+ CP++ L V G
Sbjct: 4 NPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMNVRDAKEKCPQLVL-----VNG 53
Query: 83 KADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTF 142
+ D+S+YR +V +L EFS VER DE ++DLT++V +R++ + ++ +
Sbjct: 54 E-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQQLPSDEVPSVTMS- 111
Query: 143 VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSK 202
G VY++ +L +T LA+ I E+R A+ ++
Sbjct: 112 ----------------------GHVYNNQSVNLHSSTH--VRLAVGSQIAAEMREAMHNQ 147
Query: 203 TQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSMLYANLSIKKVRHLGGKLGDEV 261
AG+A NK+LAKLV G+ KP +Q++ LP+S ++++ IK++ +G K
Sbjct: 148 LGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEMPGIGYKTAKR- 206
Query: 262 VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFP 321
+E L +++ +L+ F +K L+ A + ++ G D PV +S F
Sbjct: 207 LEVLGINSVHDLQTFPIKTLEKELGISVAQRIRKLSFGEDKSPVTPSGPPQSFSEEDTF- 265
Query: 322 GKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIA 381
K C ++ + I+EL + R+ D R+ + + + +D N SR
Sbjct: 266 -KKC-SSEVEAKTKIEELLSSLLNRVCHD----GRKPHTIRLVIRRYSDKHCNRESRQCP 319
Query: 382 LASYKLQDI 390
+ S+ +Q +
Sbjct: 320 IPSHVIQKL 328
>gi|341613645|ref|ZP_08700514.1| DNA polymerase IV [Citromicrobium sp. JLT1363]
Length = 380
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 162/385 (42%), Gaps = 84/385 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGII-AVNYEARHKGVTRHMRG 62
R I +DMD F+ VE + NP L GKP+AV G G++ A +YEAR GV M
Sbjct: 22 RKIIHVDMDAFFASVEQRDNPELRGKPVAV---GGSSGRGVVAAASYEARKFGVKSAMPS 78
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP++ K+ YR A ++ + +++VE S+DEAY+D+T+
Sbjct: 79 VTAKRLCPDLIFV-------KSRFDAYREASEQIRTIFRHHTDLVEPLSLDEAYLDVTE- 130
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
+G AA+Q
Sbjct: 131 -----NKLGIAAATQ--------------------------------------------- 140
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
+A +I +EIRA KTQ SAG+++NK LAKL +KP ++ +
Sbjct: 141 ----VAQMIRQEIRA----KTQLTASAGVSYNKFLAKLASDQNKPDGMCVIRPGEGAAFV 192
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L I++ +G + G+E + L +T +L L HF +LY ARGID
Sbjct: 193 QTLPIRRFHGVGPR-GEEKMARLGIATGADLAAKDRAWLAQHF-GSFGEYLYRAARGIDE 250
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED--------DLTLN 354
PV + KSIG + F A +++ + E+ + V ER+E L L
Sbjct: 251 RPVRVNRIRKSIGGERTFSADRHEA--EELRTTLDEIVEIVWERIERAQARGRTVTLKLK 308
Query: 355 KRRAQLLT--VSFTQETDGKVNSCS 377
QL+T S + DGKV +
Sbjct: 309 YNDFQLMTRARSLPRNVDGKVEFAA 333
>gi|361128232|gb|EHL00178.1| putative N-acetyltransferase eso1 [Glarea lozoyensis 74030]
Length = 298
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 138/307 (44%), Gaps = 54/307 (17%)
Query: 29 KPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR------- 81
+PLAV Q+ G+IA+NY AR G+ RH+ EAK+ CP I V + +
Sbjct: 10 QPLAVQQWQ-----GLIAINYPARKFGLNRHVTITEAKKQCPNIICQHVATWKEGDAKWD 64
Query: 82 -----------GKADISKYRNAGREVIAVLSEFSNI----VERASIDEAYIDLTDVVH-- 124
K + YR R ++A + E VE+AS+DE ++DL+ VH
Sbjct: 65 YHDDAFQNIATHKVSLDPYRLESRRILACIKETLPADLQKVEKASVDEVFMDLSAQVHSI 124
Query: 125 --ERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR-----KAGVMEWLGQVY---SDTDTS 174
ER I GP D+ + ++W +T
Sbjct: 125 LLERYPEIS---------------GPAPYDDPTEYLPLPPSTALDWQADALIDLDVEETE 169
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
+ D + I IV +RAAV K ++ CS G+A NK+LAKL KP +Q+I+
Sbjct: 170 DDDPDWDDVAILIGSEIVRNVRAAVREKLKYTCSGGVAQNKMLAKLGSAHKKPNQQTIVR 229
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
+V ++L K+R LGGKLG+++ + + +L ++QL+ + T +W+Y
Sbjct: 230 NRAVQQFLSDLKFTKIRGLGGKLGEQITSSFNTDNVKDLLPIPIEQLKQKLGDDTGTWVY 289
Query: 295 YIARGID 301
I RG D
Sbjct: 290 QIIRGND 296
>gi|302833114|ref|XP_002948121.1| hypothetical protein VOLCADRAFT_116690 [Volvox carteri f.
nagariensis]
gi|300266923|gb|EFJ51109.1| hypothetical protein VOLCADRAFT_116690 [Volvox carteri f.
nagariensis]
Length = 1251
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 111/192 (57%), Gaps = 2/192 (1%)
Query: 176 MENTEDFQELAIAGVIVE-EIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
+ + + L +AG +V ++R+A+L + + CSAG+AH K++AKL GLHKP +Q+++
Sbjct: 151 LSRWDPHERLLVAGAVVAAQLRSALLRELGYSCSAGVAHYKLMAKLGSGLHKPNQQTVVL 210
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
+V L NL + K+R LG K G++V E L T+ EL +L+S + + A+ L
Sbjct: 211 ARAVPTLLRNLPLAKLRSLGPKFGEQVQEGLGIQTLGELWSVPASRLESLYGPEAAAGLM 270
Query: 295 YIARGIDH-EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
+A G+D + V+ RL K++ C K F G + L + VS + +LA E+ ER+E D
Sbjct: 271 RLAAGMDEGDMVSPRLAPKTLSCGKTFRGSSALQDIRQVSPRLMQLAAEMSERIEADRRD 330
Query: 354 NKRRAQLLTVSF 365
+ R LT++
Sbjct: 331 HGRLPTQLTLTL 342
>gi|159484140|ref|XP_001700118.1| DNA polymerase eta/iota [Chlamydomonas reinhardtii]
gi|158272614|gb|EDO98412.1| DNA polymerase eta/iota [Chlamydomonas reinhardtii]
Length = 873
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 158/364 (43%), Gaps = 94/364 (25%)
Query: 8 LIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQ 67
L D+DCFYCQVE K +P+AV Q++ G+IA+NY AR GVTRHMR EAK+
Sbjct: 26 LQDLDCFYCQVEQKRLGIPREQPVAVQQWD-----GLIAINYAARAAGVTRHMRVREAKK 80
Query: 68 HCPEIELCRVPSV-RGKADISKYRNAGREVIAVLSEF----------------------- 103
CP++ L V ++ G + A +++A+L
Sbjct: 81 LCPQLRLVHVETISAGDGESGSPVKASGQIMALLGSMLRPSAAATAATAAGGGAATATGP 140
Query: 104 ----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAG 159
++E+AS+DEA++D++ +V G IA + R+A
Sbjct: 141 VSGGGCLLEKASVDEAFLDVSPLVACSPCGGGLIA------------------QRLRRA- 181
Query: 160 VMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
V E LG S AGV V NK+LAK
Sbjct: 182 VYEQLGFTCS------------------AGVSV---------------------NKLLAK 202
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLK 279
+ +KP KQ+++ V + +L + K+R LGGKLG + L +T + L+
Sbjct: 203 VGSARNKPDKQTLVLPRGVQDMLTDLPLGKLRGLGGKLGAALEGQLGAATAGQAAALPLE 262
Query: 280 QLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQEL 339
LQ E++ W++ + RG EPV + KS+ CK F + A ++ W+ L
Sbjct: 263 ALQRVLGERSGLWVWQVVRGQCSEPVTPKDKPKSLLSCKSFEPTSAPA---ELQRWLLIL 319
Query: 340 ADEV 343
A+E+
Sbjct: 320 AEEL 323
>gi|209863006|ref|NP_001129562.1| DNA polymerase iota isoform 1 [Mus musculus]
gi|51895887|gb|AAH82278.1| Poli protein [Mus musculus]
Length = 674
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/389 (26%), Positives = 181/389 (46%), Gaps = 51/389 (13%)
Query: 23 NPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRG 82
NP L +PL V Q ++ NYEAR GV + M +AK+ CP++ L V G
Sbjct: 4 NPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLMNVRDAKEKCPQLVL-----VNG 53
Query: 83 KADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTF 142
+ D+S+YR +V +L EFS VER DE ++DLT++V +R++ + + ++ +
Sbjct: 54 E-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSEEVPSVT 109
Query: 143 VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSK 202
V G VY++ +L + L + I E+R A+ ++
Sbjct: 110 V--------------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMREAMYNQ 147
Query: 203 TQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSMLYANLSIKKVRHLGGKLGDEV 261
AG+A NK+LAKLV G+ KP +Q++ LP+S ++++ IK++ +G K
Sbjct: 148 LGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKR- 206
Query: 262 VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFP 321
+E L +++ +L+ F +K L+ A + ++ G D PV +S F
Sbjct: 207 LEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVTPSGPPQSFSEEDTF- 265
Query: 322 GKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIA 381
K C ++ + I+EL + R+ D R+ + + + +D N SR
Sbjct: 266 -KKC-SSEVEAKAKIEELLSSLLTRVCQD----GRKPHTVRLVIRRYSDKHCNRESRQCP 319
Query: 382 LASYKLQDIVEVSMQVINKTNSAPPISDL 410
+ S+ +Q + +S PP+ D+
Sbjct: 320 IPSHVIQKL------GTGNHDSMPPLIDI 342
>gi|296283336|ref|ZP_06861334.1| DNA polymerase IV [Citromicrobium bathyomarinum JL354]
Length = 401
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 152/347 (43%), Gaps = 74/347 (21%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGII-AVNYEARHKGVTRHMR 61
+R I +DMD F+ VE + NP L GKP+AV G G++ A +YEAR GV M
Sbjct: 39 TRKIIHVDMDAFFASVEQRDNPELRGKPVAV---GGASGRGVVAAASYEARKFGVKSAMP 95
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
AK+ CP++ K+ YR A ++ A+ +++VE S+DEAY+D+T
Sbjct: 96 SVTAKRLCPDLIFV-------KSRFDAYREASDQIRAIFRHHTDLVEPLSLDEAYLDVT- 147
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+ +G +A+Q
Sbjct: 148 -----VNKLGIASATQ-------------------------------------------- 158
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+A +I +EIRA KT+ SAG+++NK LAKL +KP ++ +
Sbjct: 159 -----VAQMIRQEIRA----KTRLTASAGVSYNKFLAKLASDQNKPDGMCVIRPGEGAAF 209
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L I++ +G + G+E + L +T +L L HF +LY ARGID
Sbjct: 210 VQTLPIRRFHGVGPR-GEEKMARLGIATGADLAAKDAAWLAQHF-GSFGDYLYRAARGID 267
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
PV A + KS+G + F A +++ + E+ D V ER+E
Sbjct: 268 DRPVRANRIRKSVGGERTFSVDRHEA--EELRTTLDEIVDIVWERIE 312
>gi|301118068|ref|XP_002906762.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
gi|262108111|gb|EEY66163.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
Length = 601
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 137/303 (45%), Gaps = 50/303 (16%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIA-VNYEARHKGVTRHMR 61
SR I ++DMD FY VE + +P L PLAV G G+I+ NY AR GV M
Sbjct: 83 SRTIVVVDMDMFYAAVEMRDDPKLRDVPLAV------GGLGMISTTNYAARQFGVRAAMP 136
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
G K+ CP++ VP ++ KY E+ AV +E+ E S+DEA +DLTD
Sbjct: 137 GFIGKELCPDLHF--VP-----VNMKKYAGVAAEIRAVFAEYDPDFEAFSLDEACLDLTD 189
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDE-DARKAGVMEWLGQVYSDTDTSLMENTE 180
+ E + + D DE +++++ EW
Sbjct: 190 YIAENWQK----------------YISDAMDEIESKESDKEEWASTASG----------- 222
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS--SV 238
AIA V+V E+R V TQ SAGIA N +LAK+ ++KP Q +LP S V
Sbjct: 223 ---RAAIAAVVVRELRKKVFDCTQLTASAGIAVNSMLAKICSDMNKPNGQYVLPFSRERV 279
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH-FEEKTASWLYYIA 297
L ++K+ +G + + E L T +L F + +H F KTA WL +
Sbjct: 280 MTFIRELPVRKIGGIGKVMEKTLNEALDVQTGGDL--FDQRGKIAHLFSGKTAMWLLQTS 337
Query: 298 RGI 300
G+
Sbjct: 338 LGV 340
>gi|321259275|ref|XP_003194358.1| eta DNA polymerase [Cryptococcus gattii WM276]
gi|317460829|gb|ADV22571.1| eta DNA polymerase, putative [Cryptococcus gattii WM276]
Length = 689
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 160/368 (43%), Gaps = 38/368 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R IA D+D Y Q E PL Q+ + IIAVNY AR G+ R +
Sbjct: 35 RTIAHCDIDAAYAQFEQVRLGLPDDIPLICAQWQS-----IIAVNYPARKYGIKRFTSIE 89
Query: 64 EAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSE--FSN 105
+AK+ CP + + V + R K + YR ++A+ E
Sbjct: 90 DAKKMCPHLVVQHVATYRNGENEAGYWDNVNPRTHKVSLDVYRRESLRILAIFKEKIPRG 149
Query: 106 IVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW-- 163
+E+ASIDEA++DLT +V E++ + H S++ GF D ++W
Sbjct: 150 EIEKASIDEAFLDLTPMVIEKLLA-AHPYLSKVPEDAPNGF-----DSPLPPPPPIDWSK 203
Query: 164 LGQVY---SDTDTSLMENTEDFQELAIA-GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAK 219
G V+ D + ++ E QE + + RA+ + + A ++++
Sbjct: 204 AGSVFPIDGKEDGTGTDDEEGGQEDERSEDGEGPDARASSSDRDSWEDWALCMGGELMSN 263
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLK 279
L KP Q+IL ++V +R LGGKLG + + T+ ++ SL
Sbjct: 264 LCSAWRKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKLGAAIAQEFDAKTVGDMLTVSLD 323
Query: 280 QLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQEL 339
+Q F E++ W+Y I RGIDH V R+ +KS+ K + + + Q HW+ L
Sbjct: 324 AMQKKFGEESI-WVYNILRGIDHSEVTERVSTKSMLASKSI--RPAVTSPQQGYHWLSIL 380
Query: 340 ADEVCERL 347
A E+ RL
Sbjct: 381 AGELKVRL 388
>gi|432098568|gb|ELK28275.1| DNA polymerase iota [Myotis davidii]
Length = 663
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 45/284 (15%)
Query: 23 NPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRG 82
NP L GKPL V Q ++ NYEAR GV + M +AK+ CP++ L V G
Sbjct: 4 NPELKGKPLGVQQKYL-----VVTCNYEARELGVKKLMNVRDAKEKCPQLVL-----VNG 53
Query: 83 KADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTF 142
+ D+++YR +V +L EFS +VER DE ++DL+++V +R++ + S L+ +
Sbjct: 54 E-DLTRYREISYKVTELLEEFSPVVERLGFDENFVDLSEMVEKRLQQLPSDDLSALTVSA 112
Query: 143 VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSK 202
+ N D +L + I E+R A+ ++
Sbjct: 113 I-------NLHDVLHI-------------------------KLLVGSQIAAEMREAMYNQ 140
Query: 203 TQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSMLYANLSIKKVRHLGGKLGDEV 261
AG+A NK+LAKLV G+ KP +Q++ LP+SS ++++ IK++ +G K
Sbjct: 141 LGLTGCAGVASNKLLAKLVSGIFKPNQQTVLLPESSQDLIHSLKHIKEMPGIGYKTAKR- 199
Query: 262 VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPV 305
+E L S++ +L+ FS K L+ A + ++ G D+ PV
Sbjct: 200 LEALGISSVHDLQTFSSKILEKELGISIAQRIQKLSFGEDNSPV 243
>gi|58268086|ref|XP_571199.1| eta DNA polymerase [Cryptococcus neoformans var. neoformans JEC21]
gi|57227433|gb|AAW43892.1| eta DNA polymerase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 690
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 163/368 (44%), Gaps = 38/368 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R IA D+D Y Q E PL Q+ + IIAVNY AR G+ R +
Sbjct: 35 RTIAHCDIDAAYAQFEQVRLGLPDDIPLICAQWQS-----IIAVNYPARKYGIKRFTSIE 89
Query: 64 EAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEF--SN 105
+AK+ CP + + V + R K + YR +++A+ E
Sbjct: 90 DAKKMCPHLRIQHVATYRNGESEAGYWDDVDPRTHKVSLDVYRRESLKILAIFKEKIPRG 149
Query: 106 IVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW-- 163
+E+ASIDEA++DLT +V ER+ + H S++ P+ D ++W
Sbjct: 150 EIEKASIDEAFLDLTPMVIERLLA-AHPYLSKVPED-----APNGLDSPLPPPPPIDWSN 203
Query: 164 LGQVY---SDTDTSLMENTEDFQELAIAGVIVE-EIRAAVLSKTQFHCSAGIAHNKVLAK 219
G V+ D S ++ ED +E + E + R + ++ + A ++++
Sbjct: 204 AGSVFPIDGKEDGSGTDHQEDKEEDERSEDGDEFDGRTSGSNRDSWEDWALCMGGELMSN 263
Query: 220 LVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLK 279
L KP Q+IL ++V +R LGGKLG + + T+ ++ SL
Sbjct: 264 LCSAWKKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKLGAAIAQQFGAKTVGDMLTVSLD 323
Query: 280 QLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQEL 339
++Q F E++ W+Y I RGIDH V R+ +KS+ K + + + Q W+ L
Sbjct: 324 EMQRKFGEESI-WVYNILRGIDHSEVTDRVATKSMLASKSI--RPAVTSPQQGHQWLSIL 380
Query: 340 ADEVCERL 347
A E+ RL
Sbjct: 381 AGELNVRL 388
>gi|338175642|ref|YP_004652452.1| DNA polymerase IV [Parachlamydia acanthamoebae UV-7]
gi|336480000|emb|CCB86598.1| DNA polymerase IV [Parachlamydia acanthamoebae UV-7]
Length = 359
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 118/443 (26%), Positives = 184/443 (41%), Gaps = 88/443 (19%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M RII IDMD F+ +E NPSL GKP+ +V + K G + +YEAR GV M
Sbjct: 1 MNQRIIFHIDMDAFFASIEILRNPSLKGKPV-IVGGSPDKRGVVSTCSYEARAYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
EAK+ CP ++ + D + YRN +V+ +LS S++VE SIDEAY+D
Sbjct: 60 SLFEAKKKCPH-------AIFVEGDYAIYRNYSSKVMDILSRHSSLVEVVSIDEAYMD-- 110
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
V F D+ + A++ G
Sbjct: 111 -----------------------VSFLKDDPEMTAKQYG--------------------- 126
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+++ AVL T CS GIA NK++AK+ KP +P +
Sbjct: 127 ------------RKLKEAVLKNTGLTCSVGIASNKLIAKIASSRAKPNGLYEIPSGEEAA 174
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
A L I + +G K +++ + T+ +L+K L L + + + Y A GI
Sbjct: 175 FLATLPIGAIPGIGSKTEKSLIDD-RLYTIADLQKIDLDTLIERYGTR-GYYFYLAAHGI 232
Query: 301 DHEPVNA-RLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
D PV+ KSIG F LA + + EL + C+RL ++ Q
Sbjct: 233 DKRPVDGEEYFPKSIGAETTFEAD--LADSTILLETLSELVQKACKRL--------KKYQ 282
Query: 360 LLTVSFT---QETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLF 416
T F+ + +D + + SR + + Q I E + K ++ D+ PL
Sbjct: 283 TRTRGFSLKLRYSDFRTVTRSRLLFSHTQDEQTIWEEARDFFLKVHT----KDV--PLRL 336
Query: 417 LGLSASKFSPLGSHPSIQQFFKP 439
+G+S K S P++ + +P
Sbjct: 337 IGISLEKLSDGYWQPTLWNWEQP 359
>gi|325179727|emb|CCA14130.1| DNA polymerase kappa putative [Albugo laibachii Nc14]
Length = 614
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 119/429 (27%), Positives = 191/429 (44%), Gaps = 61/429 (14%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+RI +IDMD FY VE + NP L PLAV G I NYEAR GV M G
Sbjct: 141 TRIKVVIDMDMFYAAVEMRDNPILRHVPLAVGSI-----GMISTTNYEARKFGVRSAMPG 195
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
K+ CP++ V + KY +E+ + + + S+DEA +DLTD
Sbjct: 196 FIGKKLCPDL-------VFTPVRMEKYSAIAQEIRQIFAVYDPNFTAFSLDEAALDLTDY 248
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDN--NDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
E + SQLS + + D D + R+ G G ++ T
Sbjct: 249 TREHWRKY----VSQLS---LKDWNHDGWMQDCETRQEG-----GHEMPESLT------- 289
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+ IA IV EIR + +TQ SAGIA N +LAK+ + KP Q L S +
Sbjct: 290 ----MKIASAIVSEIRQRIFEETQLTASAGIAVNTMLAKICSNIEKPNGQFALEGSKEVI 345
Query: 241 L--YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH-FEEKTASWLYYIA 297
L L ++KV + GK+ ++++ L +TM E+ F + + H F+E+TA+WL
Sbjct: 346 LEFIRELPVRKVGGI-GKVMEKILAALNITTMQEV--FDRRAVLFHVFKERTATWLLRTC 402
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRR 357
GI + + K + +T D ++++ +CE L DL +
Sbjct: 403 LGIQEQQSESER--------KSYSRETTFKAVSDFES-LKQICASICEHLAQDLAEDNVA 453
Query: 358 AQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFL 417
A+ +T+ + D V + S ++ + + +++V++ ++ + PIS L L
Sbjct: 454 ARNITLKL-KCADFSVRTRSVTLNTSIQSCKRLLQVALDLLKREM---PIS-----LRLL 504
Query: 418 GLSASKFSP 426
G+ A+ P
Sbjct: 505 GIRAASLIP 513
>gi|254876929|ref|ZP_05249639.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842950|gb|EET21364.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 350
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 138/312 (44%), Gaps = 69/312 (22%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R I IDMD F+ QVE K NPSL KP AV N K G I NY AR G+ M
Sbjct: 4 TRKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGIHSAMPT 62
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A Q CP + L D +KY+ A + V F++ VE S+DEAY+D+TDV
Sbjct: 63 AIAMQKCPNLILLN-------TDFAKYKAASSIIREVFYTFTDKVEPLSLDEAYLDVTDV 115
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
AA + S T +
Sbjct: 116 -----------AAYKNSATLI--------------------------------------- 125
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A I +EI +KT SAG+A NK+LAK+ ++KP ++ V+
Sbjct: 126 -----AQAIKQEI----FNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQVNNFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
NL +KK+ + GK+ E ++++ T L+L++ SL L F K S LY ARGID+
Sbjct: 177 KNLPVKKLFGV-GKVSQEKLKSMNVETCLDLQQLSLATLVDKF-GKFGSSLYNYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KS+
Sbjct: 235 REVNPVRIRKSV 246
>gi|357418538|ref|YP_004931558.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
gi|355336116|gb|AER57517.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
Length = 366
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 112/400 (28%), Positives = 171/400 (42%), Gaps = 84/400 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + +P+L GKP VV + G + A +YEAR GV M G
Sbjct: 2 RKILHIDMDAFYASVEQRDDPALRGKP--VVVGGSAPRGVVCAASYEARKYGVRSAMPGV 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A++ CP+ ++ D ++YR R++ + +++VE S+DEAY+ DV
Sbjct: 60 TARRLCPQ-------AIFVAPDFARYRAVSRQIREIFLAHTDLVEPLSLDEAYL---DVT 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
R IA+S + T
Sbjct: 110 APR------IASSSATAT------------------------------------------ 121
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+ IRA + T SAGIA NK LAK+ +KP Q ++ + V
Sbjct: 122 --------AQAIRAQIFETTGLTASAGIAPNKFLAKIASDWNKPNGQYVIKPAQVEAFLT 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L + ++ + GK+ + + L +T+ +L +F+L +LQ F A+ LY ARGID
Sbjct: 174 PLKVGRIPGV-GKVAERKLAELGVATVGDLRRFTLDELQLRFGRFGAA-LYRRARGIDER 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCE------RLEDDLTLNKRR 357
PV +SI F LA ++ I +AD+ R+ + L +
Sbjct: 232 PVQPDQQVQSISAEDTFEVDLPLA---ELGPAIARMADKAWRATGKTARIGHTVVLKLKT 288
Query: 358 AQ--LLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSM 395
AQ +LT SFT E + +IALA L+D V++ +
Sbjct: 289 AQFRILTRSFTPEAPPSSLAQFTAIALA---LRDRVDLPV 325
>gi|254567201|ref|XP_002490711.1| hypothetical protein [Komagataella pastoris GS115]
gi|238030507|emb|CAY68431.1| hypothetical protein PAS_chr1-4_0703 [Komagataella pastoris GS115]
Length = 614
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 112/468 (23%), Positives = 219/468 (46%), Gaps = 50/468 (10%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGK-PLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
++A ID++ F+ QVE +L L + PL VQ+++ IIAV+Y AR G+ R +
Sbjct: 32 VVAHIDVNAFFAQVE-QLRLGLSKEDPLVCVQWSS-----IIAVSYSARKYGINRMDTLE 85
Query: 64 EAKQHCPEIELCRVPSVR-GKADIS----------------KYRNAGREVIAVLSEFSNI 106
A C +++ + G++D S YR R+++ + +
Sbjct: 86 SALSKCEGLKVGHTAVFKKGQSDWSYIDYLPSPKDHKVSLDPYRRESRKIMRIFKLRCSK 145
Query: 107 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ 166
VE+AS+DE+++DL +VV +++ + + + L +F + P+ +E +++ G+
Sbjct: 146 VEKASVDESFLDLGNVVFQKLLELFPVLKNSLDKSF-DDYLPEIPEELPEG---LDFKGE 201
Query: 167 VY-----SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLV 221
V D D ++++ +D L +A + +IR + + S GI K +AKL
Sbjct: 202 VIRCPETDDQDGLVLQDWDDIVML-LASMEAHDIRKQIEKALDYTTSCGIGRVKTIAKLA 260
Query: 222 CGLHKPQKQSILPQSSV-SMLYANLSIKKVRHLGGKLGDEVVETLQC----STMLELEKF 276
GLHKP Q+I+ ++ + L + +G K + + L S E F
Sbjct: 261 SGLHKPDNQTIIRNCAIDNFLNTHFKFTDFWGIGPKTSGIIKQRLLVPEEDSIGYIKENF 320
Query: 277 SLKQLQSHFEE-KTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
+ ++L+ ++ + A+ LY + RG+ E +N R+ KS+G K F GK+ + + +D+ W
Sbjct: 321 TQEELELKLKDPQLATRLYQLVRGLYQEAINTRIDIKSMGSNKNFRGKS-VNSVKDLIDW 379
Query: 336 IQELADEVCER---LEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVE 392
+ ++ +R L+++ RR + + V C+ + +KL++++
Sbjct: 380 LPVFVGDLIQRLTELDEEQPNCIRRPKTVAVHLWSWNGAYSKQCTVPKFMDLFKLKEVIS 439
Query: 393 VSMQVINKTNSA----PPISDLTPPLLFLGLSASKFSPLGSHPSIQQF 436
+ + KT ++ P+S PL L+ + F + S SI +F
Sbjct: 440 HEAEHLIKTFASTFDNSPVSLF--PLRSFSLNLTSFEVISSKESIDKF 485
>gi|198425156|ref|XP_002120223.1| PREDICTED: similar to polymerase (DNA directed), kappa [Ciona
intestinalis]
Length = 706
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 118/462 (25%), Positives = 207/462 (44%), Gaps = 65/462 (14%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV---NYEARHKGVTRH 59
SR I IDMD FY VE + P L KP+AV GG+ + NY AR GV
Sbjct: 105 SRTIIHIDMDAFYAAVEERDRPELKQKPMAV--------GGMDMLSTSNYVARKYGVRAA 156
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M G AK+ CP + + VP+ + KYR +E + SE+ S+DEA++D+
Sbjct: 157 MPGFIAKKLCPNLII--VPT-----NFDKYREVSKETQEIFSEYDENFCGMSLDEAFLDI 209
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
TD + +R+ D++ R L + DT +++
Sbjct: 210 TDHLQKRLIY----------------------DQEERTFHYHPTLAPTTTSEDTDDKKSS 247
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP--QSS 237
E F A + +EIR + KT SAGIA N +LAK+ L+KP Q+ +
Sbjct: 248 ETFG--FSAEEVAKEIRFRIQQKTLLTASAGIAPNTMLAKIGSDLNKPNGQTFFAPNRDE 305
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLY 294
+ + ++KV + GK+ ++++ +L +C + E+ +L F + S+ +
Sbjct: 306 IMKFIKDFPVRKVNGI-GKVTEQLLSSLGVQKCGDIYEMR----AELMLLFSATSCSFFF 360
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ G + KSI + F + ++ R ++ + DE+C L D+
Sbjct: 361 RMCLGCSSNILEPDGERKSISTERTF---STISNRDELFAKL----DELCHSLAADMKKQ 413
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
+ + LT+ T+ D ++++ S++I + Q I V+ +++ K + L+ L
Sbjct: 414 NVQGKTLTLK-TKNVDFQLHTRSKTINVPMTNYQTIFPVAQELL-KQEILNANNKLSLRL 471
Query: 415 LFLGLSASKFSPLGSHPSIQQFF----KPQDHPEPMTSEHSS 452
+ +GLS + + SI +FF KPQ + ++++ SS
Sbjct: 472 MGVGLSKLETGTTSAQTSILKFFAGNTKPQSCDKTLSAQTSS 513
>gi|156041128|ref|XP_001587550.1| hypothetical protein SS1G_11543 [Sclerotinia sclerotiorum 1980]
gi|154695926|gb|EDN95664.1| hypothetical protein SS1G_11543 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 465
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 55/333 (16%)
Query: 4 RIIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
R+IAL+D D FY Q E KL+ S +PLAV Q+N IIA+NY AR G +R
Sbjct: 36 RVIALVDYDAFYAQCEMVRLKLDAS---QPLAVQQWN-----AIIALNYAARGFGFSRGA 87
Query: 61 RGDEAKQHCPEIELCRVPSVR--------------------GKADISKYRNAGREVIAVL 100
+E ++ CP I + V + R KA + YR R+ I ++
Sbjct: 88 SVEEVRRLCPNIIMQHVATWREGETSWAYRSDAADPAMMKKDKAALDPYRIESRKSINII 147
Query: 101 SEFS-----NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDA 155
++ +E+AS+DE +IDL+ VH + S QL+ D+N +
Sbjct: 148 TKHLPPAPLQRIEKASVDEVFIDLSAHVHSVLVS----RYPQLAV--------DDNVHGS 195
Query: 156 R----KAGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIRAAVLSKTQFHCS 208
+ V+ W D TS + D+ E+A I IV +R + + CS
Sbjct: 196 LPLPPRDIVLHWETDNLVDLPTSTDDTHRIDWDEIALNIGAQIVRNLRKEIFESLHYTCS 255
Query: 209 AGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCS 268
AGIA NK LAKL G KP +Q+++ +V + + +R L G LG + E +
Sbjct: 256 AGIAQNKALAKLGAGFKKPDQQTVIRARAVPFFLSTCKMTSIRGLAGVLGVKAKEAFGSN 315
Query: 269 TMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
++ +L K++ + + +TAS+ ++ +D
Sbjct: 316 SIPDLLAIPQKEIVAALDFRTASYRHWPGVFLD 348
>gi|70726059|ref|YP_252973.1| DNA polymerase IV [Staphylococcus haemolyticus JCSC1435]
gi|82592825|sp|Q4L7K8.1|DPO4_STAHJ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|68446783|dbj|BAE04367.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 358
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 146/347 (42%), Gaps = 71/347 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD F+ QVE + NP+L GKP+ +V G + +YEAR GV M
Sbjct: 1 MAERRIIHIDMDYFFAQVEMRDNPTLKGKPV-IVGGKASTRGVVSTASYEARKYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP R A YR A ++++ +++IVE S+DEAY+D+T
Sbjct: 60 PMSQAHKLCPNGYYVR-------ARFDAYREASAVIMSIFKSYTDIVEPMSLDEAYLDIT 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
H+ LS + + F
Sbjct: 113 -----------HLVRPDLSASKIATF---------------------------------- 127
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
IR + +T SAG+++NK LAKL G++KP ++ ++V+
Sbjct: 128 --------------IRRDIFEQTGLTSSAGVSYNKFLAKLASGMNKPNGMKVIDYNNVND 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ NL I + GK +V+ T +L + +L F K LY ARGI
Sbjct: 174 ILMNLDIGDFPGV-GKASKKVMHNHDIYTGKDLYDKTEFELIRWF-GKRGRGLYLKARGI 231
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
DH V A V KS+G + F T + +++ I EL+ + ERL
Sbjct: 232 DHSEVKATRVRKSVGTERTFS--TDVNDDEEILQKIWELSGKTAERL 276
>gi|412988027|emb|CCO19423.1| DNA polymerase eta [Bathycoccus prasinos]
Length = 741
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 97/186 (52%), Gaps = 3/186 (1%)
Query: 183 QELAIAGVIVEEI-RAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
++L IAG V + R + S G++ NK+LAKL G++KP +IL +S L
Sbjct: 299 EKLKIAGAYVCNVAREDCFVNLGYTLSCGVSSNKMLAKLTSGMNKPNCCTILEESFTPSL 358
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHF--EEKTASWLYYIARG 299
+L I ++R LGG LG+E+ E L +T+ L K K L +EK W+ ARG
Sbjct: 359 LEHLPIDRIRGLGGNLGEELSEVLGVTTIGGLAKADRKSLLMALGRDEKKTLWVQRAARG 418
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
+D +PV R KSI K F G CL T V WI ELA+E+ ER E D +R +
Sbjct: 419 VDDDPVKERSAPKSIATSKTFRGAMCLETTDQVLKWIGELAEELSERTELDGQDWRRHPK 478
Query: 360 LLTVSF 365
LT+
Sbjct: 479 TLTLGI 484
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 83/139 (59%), Gaps = 23/139 (16%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGI------------------- 44
R+IA D+DCFYCQVE L+ SL P V QY+ ++ G+
Sbjct: 26 RVIAHFDLDCFYCQVERSLDDSLKEMPTGVCQYDPFERDGVSTRDAMGDRKTHLTRPGAN 85
Query: 45 ---IAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLS 101
IAV+YEAR KGV R+M+ EA++ CPE+ +VP+ KAD+ YR+AG +V A L+
Sbjct: 86 NSLIAVSYEARKKGVKRNMKIGEARRCCPEMIFVQVPTKHSKADLKIYRDAGAKVAAELA 145
Query: 102 EFSNIVERASIDEAYIDLT 120
+ I ERASIDEAY+D+T
Sbjct: 146 KHGTI-ERASIDEAYLDVT 163
>gi|358256292|dbj|GAA57760.1| DNA polymerase eta subunit, partial [Clonorchis sinensis]
Length = 326
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 106/192 (55%), Gaps = 7/192 (3%)
Query: 44 IIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEF 103
IIAV+YEAR +GV R M G A CP + L VP RGKAD++KYR+A EV +SE
Sbjct: 1 IIAVSYEARAEGVKRGMWGKTAISVCPNLILFEVPEKRGKADLAKYRSASAEVFQCISEH 60
Query: 104 SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQL---SNTFVVGFGPDNNDEDARKAGV 160
VERASIDEAY+DLT++V ++ I + S +FVV + +A G+
Sbjct: 61 FKDVERASIDEAYVDLTELVTSTVQQIDWTKSGAHQPNSESFVV--IDSGSALEASANGM 118
Query: 161 MEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKL 220
L ++ D L E D A+A + ++R +L++T F CSAGIA NK L
Sbjct: 119 CAVLDRL--DWVNYLEERFNDGLRYAVATELTHKLRQTILTRTGFRCSAGIAPNKWLDIW 176
Query: 221 VCGLHKPQKQSI 232
+ LH+ ++ +
Sbjct: 177 ISILHEYVRKDV 188
>gi|414342328|ref|YP_006983849.1| DNA polymerase IV [Gluconobacter oxydans H24]
gi|411027663|gb|AFW00918.1| DNA polymerase IV [Gluconobacter oxydans H24]
Length = 379
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 185/455 (40%), Gaps = 105/455 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M SR I IDMD FY VE + NPSL G+PLAV + G + A +YEAR GV M
Sbjct: 1 MESRRIVHIDMDAFYASVEQRDNPSLRGRPLAVGRGEAR--GVVAAASYEARPFGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP +L VP A YR ++ + + ++ +++ S+DEAY+DLT
Sbjct: 59 PSLKAKRLCP--DLVFVP-----ARFDVYRTVSAQIHEIFARYTPLIQPLSLDEAYLDLT 111
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D +LG S T
Sbjct: 112 D-----------------------------------------YLGAYGSAT--------- 121
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
++ E IRA + +T SAG+++N+ LAKL KP ++
Sbjct: 122 ---------LVAESIRADIRKETGLTASAGVSYNRFLAKLASDYRKPDGLFVITPRMGPD 172
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
A L++ + +G + + L T +L K L L HF K+A + + I+RGI
Sbjct: 173 FVAGLAVDQFHGIGPATARK-MRALGIETGADLRKLDLPTLTRHF-GKSALFYHGISRGI 230
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCER-----LEDDLTLNK 355
D PV KS+G T Q ++ +L DE R + L L
Sbjct: 231 DERPVVVNRERKSLG------------TEQT---YLSDLKDENAARAALGLIATKLWLQA 275
Query: 356 RRAQLLTVSFT---QETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTP 412
+R Q+ + T + D + + +R++ + + +V + P+ LTP
Sbjct: 276 QRKQITGRTVTLKVKYADFRQITRARTLPASVNSEAVLADVGQSLFT------PLFPLTP 329
Query: 413 PLLFLGLSASKFSPL-----GSHPSIQQFF-KPQD 441
+ LGL+ S + S P +Q F +PQ+
Sbjct: 330 GVRLLGLTMSSLAGTDDATPDSPPQMQLLFEQPQN 364
>gi|254372939|ref|ZP_04988428.1| hypothetical protein FTCG_00510 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570666|gb|EDN36320.1| hypothetical protein FTCG_00510 [Francisella novicida GA99-3549]
Length = 349
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A + + F++ VE S+DEAY+D+TDV
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAASSIIREIFHSFTDKVEPLSLDEAYLDVTDVT 116
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
VY ++ T
Sbjct: 117 -------------------------------------------VYKNSAT---------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IA I +EI +KT S G+A NK+LAK+ ++KP ++ V+
Sbjct: 124 --LIAQAIKQEI----FNKTGLTGSTGVAPNKLLAKIASDINKPNGLYVITPEQVNDFVK 177
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
NL +KK+ + GK+ E ++++ T +L++ SL L F K S LY ARGID+
Sbjct: 178 NLPVKKLFGV-GKVSQEKLKSMNVETCSDLQQLSLATLVDKF-GKFGSSLYNYARGIDNR 235
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
VN + KSI + L T + + L D++ R+ D+
Sbjct: 236 EVNPVRIRKSISVENTYLED--LKTLEACLEKLPSLYDKLTSRITDE 280
>gi|344303222|gb|EGW33496.1| DNA polymerase eta subunit [Spathaspora passalidarum NRRL Y-27907]
Length = 703
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 175/381 (45%), Gaps = 48/381 (12%)
Query: 6 IALIDMDCFYCQVE-CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
I L+D + F+ QVE +L S P+ Q+ + +IAV+Y AR G+ R
Sbjct: 47 IGLVDQNAFFAQVEQIRLGLS-DQDPVVCAQWQS-----LIAVSYAARKFGIGRMDSIKS 100
Query: 65 AKQHCPEIELCRVPSV-RG----------------KADISKYRNAGREVIAVLSEFSNIV 107
AK+ CP++ + RG K + YR R+++ ++ + ++V
Sbjct: 101 AKEKCPKLIVAHAAVYKRGESHWSYIDGLPDAANHKVSLDTYRRESRKIVRLIQQRFDLV 160
Query: 108 ERASIDEAYIDLTDVVHERM-KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ 166
E+AS+DE+YID ++E+M K ++ + + PD + + GV+
Sbjct: 161 EKASVDESYIDFGRKIYEKMLKLFPELSRQPGDPSEYLPTIPDKLPIEIQWEGVV----- 215
Query: 167 VYSDTDTSLMENT---------EDFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 215
+ SD++ +N ED+ + L +A + +R + + + SAG+A NK
Sbjct: 216 IPSDSEIQRDDNAQEQIGKPKIEDWDDICLIVASKEMLNLRKVIHDELGYTTSAGLARNK 275
Query: 216 VLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC-----STM 270
++AKL G KP Q+I+ +++ N + + +GGKLG+ ++ L+ S
Sbjct: 276 LMAKLAGGFKKPDNQTIIRNCALNRFLTNFELTDITGMGGKLGENLMYRLEVPADKNSIT 335
Query: 271 LELEKFSLKQLQSHFEE--KTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLAT 328
+ ++L+ LQ +E + A +Y I RG+ + + + KS+ K + + L
Sbjct: 336 YIRDNYTLEMLQEEIKEDPELALKIYQIVRGLRSTELTSWIELKSMTSTKNYLPQKPLQN 395
Query: 329 RQDVSHWIQELADEVCERLED 349
+ W++ A ++ RL D
Sbjct: 396 LGEAYGWLKVFAGDLYNRLID 416
>gi|341038544|gb|EGS23536.1| DNA polymerase iota-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 756
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 169/390 (43%), Gaps = 51/390 (13%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII D+DCFY QV NP L +PL + Q G + NY AR +GV++ M
Sbjct: 22 RIILHFDLDCFYAQVVENRNPHLKHQPLGIRQK-----GLLATCNYVARARGVSKLMSLP 76
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLS--EFSNIVERASIDEAYIDLTD 121
EA++ CPE+ L V G+ D++ +R A + V +L +++ VER +DE ++D+TD
Sbjct: 77 EARRACPELIL-----VDGE-DLTPFRQASKRVYTLLRAHSWNDRVERLGLDEVFMDVTD 130
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK-AGVMEWLGQVYSDTDT----SLM 176
VV + + + G DAR+ AG + + G+ D ++
Sbjct: 131 VVGWNVGVLNRFDLRRSWFCLERGEPERGFSFDAREFAGCVHYHGEGEPPGDEVDEEGVV 190
Query: 177 ENTEDFQ-ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI--- 232
+ + + L +A + +R + + + S GI+ NKVLAKLV G +KP+ Q+
Sbjct: 191 KKVDTLRMRLLVASHLARYLREKIEKEEGYTSSCGISTNKVLAKLVGGKNKPRNQTTLLA 250
Query: 233 LPQSSVSMLYANLSIKKVRHLGGKL-----------------------GDEVVETLQCST 269
L Q V L + KV +GG++ G + Q T
Sbjct: 251 LRQDHVLSFMDPLPLHKVPGIGGRIVSVLENAVRSHPPNPGSASFRESGPGPITVSQVRT 310
Query: 270 MLELEKFSLKQL-----QSHFEEKTASWLYYIARGIDHEPVN-ARLVSKSIGCCKRFPGK 323
+ SL++L S FE L+ + G D V AR V IG + +
Sbjct: 311 HPSITPSSLERLLQGTSTSTFERGLGPKLWALLHGADTSEVKPARDVPVQIGVEDTYHAR 370
Query: 324 TCLATRQDVSHWIQELADEVCERLEDDLTL 353
L T++ I EL + R+ DL +
Sbjct: 371 GGLQTQEQARRAIVELTVSLLRRIRGDLCV 400
>gi|328351096|emb|CCA37496.1| DNA polymerase eta subunit [Komagataella pastoris CBS 7435]
Length = 990
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/468 (23%), Positives = 219/468 (46%), Gaps = 50/468 (10%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGK-PLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
++A ID++ F+ QVE +L L + PL VQ+++ IIAV+Y AR G+ R +
Sbjct: 37 VVAHIDVNAFFAQVE-QLRLGLSKEDPLVCVQWSS-----IIAVSYSARKYGINRMDTLE 90
Query: 64 EAKQHCPEIELCRVPSVR-GKADIS----------------KYRNAGREVIAVLSEFSNI 106
A C +++ + G++D S YR R+++ + +
Sbjct: 91 SALSKCEGLKVGHTAVFKKGQSDWSYIDYLPSPKDHKVSLDPYRRESRKIMRIFKLRCSK 150
Query: 107 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ 166
VE+AS+DE+++DL +VV +++ + + + L +F + P+ +E +++ G+
Sbjct: 151 VEKASVDESFLDLGNVVFQKLLELFPVLKNSLDKSF-DDYLPEIPEELPEG---LDFKGE 206
Query: 167 VY-----SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLV 221
V D D ++++ +D L +A + +IR + + S GI K +AKL
Sbjct: 207 VIRCPETDDQDGLVLQDWDDIVML-LASMEAHDIRKQIEKALDYTTSCGIGRVKTIAKLA 265
Query: 222 CGLHKPQKQSILPQSSV-SMLYANLSIKKVRHLGGKLGDEVVETLQC----STMLELEKF 276
GLHKP Q+I+ ++ + L + +G K + + L S E F
Sbjct: 266 SGLHKPDNQTIIRNCAIDNFLNTHFKFTDFWGIGPKTSGIIKQRLLVPEEDSIGYIKENF 325
Query: 277 SLKQLQSHFEE-KTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
+ ++L+ ++ + A+ LY + RG+ E +N R+ KS+G K F GK+ + + +D+ W
Sbjct: 326 TQEELELKLKDPQLATRLYQLVRGLYQEAINTRIDIKSMGSNKNFRGKS-VNSVKDLIDW 384
Query: 336 IQELADEVCER---LEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVE 392
+ ++ +R L+++ RR + + V C+ + +KL++++
Sbjct: 385 LPVFVGDLIQRLTELDEEQPNCIRRPKTVAVHLWSWNGAYSKQCTVPKFMDLFKLKEVIS 444
Query: 393 VSMQVINKTNSA----PPISDLTPPLLFLGLSASKFSPLGSHPSIQQF 436
+ + KT ++ P+S PL L+ + F + S SI +F
Sbjct: 445 HEAEHLIKTFASTFDNSPVSLF--PLRSFSLNLTSFEVISSKESIDKF 490
>gi|449015370|dbj|BAM78772.1| DNA polymerase iota, RAD30 [Cyanidioschyzon merolae strain 10D]
Length = 658
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 152/354 (42%), Gaps = 66/354 (18%)
Query: 2 TSRIIALIDMDCFYCQVECKL--NPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRH 59
SR++A+ D D FYCQVE + SL KP AV Q + ++ NYEAR GV +
Sbjct: 6 ASRVVAVFDADYFYCQVELNAVGDESLRSKPAAVFQKHL-----VVTCNYEARKYGVGKL 60
Query: 60 MRGDEAKQHCPEIEL-CRVPSVRGKADISKYRNAGREVIAVLSE---------FSNIVER 109
MR DEAK+ CPE+ L C D++ YR+A + L E + E
Sbjct: 61 MRVDEAKRLCPELVLFC-------GEDLTPYRDAQERICEALEEKLRSLDEVGREHRCET 113
Query: 110 ASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYS 169
+DE DLT VV R++S+ N E A+K + E++G V+
Sbjct: 114 VGLDEYIFDLTAVVDRRLRSM--------------------NAECAQKGPLNEYVGAVFP 153
Query: 170 --------DTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLV 221
D L+ E+ + LA+ I + +R A +T S G+ NK+LAK
Sbjct: 154 RDFMPESLQPDICLVGPEEELR-LALGSDIAKNMRDAAFERTGITISCGVGFNKMLAKFA 212
Query: 222 CGLHKPQKQ-SILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELE-KFSLK 279
+HKP Q + +P + L ++ + ++G + + E L T+ EL +F
Sbjct: 213 ANMHKPNGQTTFVPTVRADSWLSELELRSLPYVGRRFERLLSEELHVRTVKELRTRFDSP 272
Query: 280 QLQSHFEEKT-----------ASWLYYIARGIDHEPVNARLVSKSIGCCKRFPG 322
H KT A ++ ARG E V +R + I FPG
Sbjct: 273 LTLEHAIRKTFGKFAAVFAKRARDIWLAARGDFPEEVYSRGPLQRIHVEDSFPG 326
>gi|320169035|gb|EFW45934.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 893
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 102/193 (52%), Gaps = 8/193 (4%)
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN 244
L A I EIR AVL++ FHCSAGIA NK+LAKL L+KP KQ+ + + L +
Sbjct: 461 LWFAAQITLEIRNAVLNQLDFHCSAGIAENKMLAKLASSLNKPNKQTTVTSTGAIALMRS 520
Query: 245 LSIKKVRHLGGKLGDEVVETL-QCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L ++K+R LGGKLG EV + L E+ F L +L S T ++Y RG D
Sbjct: 521 LPLRKIRGLGGKLGREVCKRLGDIELAGEVWSFPLSRLVSLLGSDTGPFVYAAVRGRDSS 580
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
V R +KS+ K F + T Q + W++ LA E+ R+ D KR + L V
Sbjct: 581 AVVPRSTTKSMLAAKSF--SPVVETYQSLLDWLRVLASELVLRMRAD----KRVPRTLKV 634
Query: 364 SFTQET-DGKVNS 375
F + + +G+ NS
Sbjct: 635 QFHRASPNGRANS 647
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 25/144 (17%)
Query: 4 RIIALIDMDCFYCQVE-CKLN-PSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
R I +D+D FY QVE +L P P AV+Q+ G IIAVNY AR GV R
Sbjct: 12 RAIMHLDLDAFYAQVEERRLGVPPGADVPFAVIQW-----GMIIAVNYAARKHGVARFEL 66
Query: 62 GDEAKQHCPEIELCRVPSVRG-----------------KADISKYRNAGREVIAVLSEFS 104
A + CP + V + G K + YR+ + VL +
Sbjct: 67 IQNAWKKCPILRAVHVQTFTGDGTQPQGYYPNPRKATHKVSLDAYRDTSARIFDVLERAT 126
Query: 105 NI-VERASIDEAYIDLTDVVHERM 127
+ +++AS+DEA+ DLT++ +R+
Sbjct: 127 SAPIQKASVDEAFFDLTEIAWQRL 150
>gi|323451991|gb|EGB07866.1| hypothetical protein AURANDRAFT_26642 [Aureococcus anophagefferens]
Length = 218
Score = 111 bits (277), Expect = 2e-21, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 13/148 (8%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
T + IDMDCFY VE +PSL G P+AV QY +W+ YEAR GV R M+
Sbjct: 4 TQACVGFIDMDCFYVAVERARDPSLDGLPVAVCQYESWQKDTKTLTAYEARAAGVKRQMQ 63
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT- 120
+A++ CP + +VP+ GKA++S Y+ AG+ V +L+ F++ VE+ S+DE +D+T
Sbjct: 64 AGQARKACPRLVTVQVPTEHGKANMSIYKEAGQRVCDILATFADRVEKRSVDEVAVDVTG 123
Query: 121 ------------DVVHERMKSIGHIAAS 136
D++ E ++ H+A S
Sbjct: 124 AARRLLETTPFDDILREALQKGSHLADS 151
Score = 44.7 bits (104), Expect = 0.28, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 208 SAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC 267
+ G+A NK LAKL CGLHKP +Q+++ + V+ L +L + ++ LGG+ G + + L+
Sbjct: 153 AGGVAPNKQLAKLGCGLHKPNQQTVVLRRHVAGLLRDLPLDRLAGLGGEFGKRLKDELRV 212
Query: 268 STMLEL 273
T +L
Sbjct: 213 ETAGDL 218
>gi|217979283|ref|YP_002363430.1| DNA-directed DNA polymerase [Methylocella silvestris BL2]
gi|217504659|gb|ACK52068.1| DNA-directed DNA polymerase [Methylocella silvestris BL2]
Length = 359
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 139/313 (44%), Gaps = 70/313 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ VE + NP L GKP+AV + + G + A +YEAR GV M
Sbjct: 7 RKIIHIDMDAFFASVEQRDNPELRGKPVAVG--GSSQRGVVAAASYEARAFGVRSAMPSV 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A++ CPE+ V+ + D+ YR E+ A+ +E++ I+E S+DEAY+D+++ +
Sbjct: 65 TARRKCPELIF-----VKPRFDV--YRAVSDEMRAIFAEYTPIIEPLSLDEAYLDVSETL 117
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ G ++A++++
Sbjct: 118 N------GALSATEIA-------------------------------------------- 127
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
++IRA + +T SAG+++NK LAKL KP ++
Sbjct: 128 ---------QQIRAKIRERTNLTASAGVSYNKFLAKLASDHRKPDGLFVITPKMGPAFVE 178
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L ++K +G + ++ L T +L+ SL +Q F K + Y +ARG+D
Sbjct: 179 PLPVRKFHGVGPATAAK-MKRLGIETGFDLKAQSLAFMQQQF-GKAGPYYYGVARGVDER 236
Query: 304 PVNARLVSKSIGC 316
PV A + KS+G
Sbjct: 237 PVRAHRIRKSVGA 249
>gi|312373688|gb|EFR21387.1| hypothetical protein AND_17124 [Anopheles darlingi]
Length = 568
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
+ARGID E V A+ SKSIGCCKRFPGK + + HW+ ELA E+ ERLE D N
Sbjct: 1 MARGIDLEAVTAKFHSKSIGCCKRFPGKNAITGLATLQHWLNELATEIVERLEKDFDENN 60
Query: 356 RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNS----APPISDLT 411
R A+ +TVS++Q+ + +RS+ L Y+ + I +++ I + A + L
Sbjct: 61 RTAKQMTVSYSQQFGDSDVASTRSVPLVLYETERIASDALEAIKRNTERFFKAGSTTALH 120
Query: 412 PPLLFLGLSASKFSPLGS 429
+ FLG+SA KF P G+
Sbjct: 121 NAIKFLGISAGKFEPNGA 138
Score = 39.7 bits (91), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 933 TIADSSTVDSAINIADPTKIICDKCSQPIDINELQEHQDYHFALELS 979
T A+ S + A A + C++C + I +EL HQD+HFAL+LS
Sbjct: 346 TYAEYSFLPPAEKAAAIVTVECEQCGKQIPEDELLSHQDFHFALQLS 392
>gi|115398766|ref|XP_001214972.1| hypothetical protein ATEG_05794 [Aspergillus terreus NIH2624]
gi|114191855|gb|EAU33555.1| hypothetical protein ATEG_05794 [Aspergillus terreus NIH2624]
Length = 1164
Score = 110 bits (274), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 151/353 (42%), Gaps = 53/353 (15%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +D DCF+ V +P L GKP+A+ + T G I + NY AR +GV M
Sbjct: 379 RYILHVDFDCFFAAVSSLKHPELDGKPVAIA-HGTGSGSEIASCNYPARARGVKNGMWMK 437
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CPE+++ D + Y +A ++ + + +V+ SIDEA +D+T
Sbjct: 438 GALQECPELKVL-------PYDFAAYEDASQKFYSSILSIDGVVQSVSIDEALVDITTQC 490
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
HE + G G+ E G +Y +
Sbjct: 491 HEAGGTDGR--------------------------GISE--GSIY--------------R 508
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
E A A I + +R +V +KT S GI N + AK+ KP Q L +V
Sbjct: 509 EQARADEIAQNLRDSVKAKTGCAVSVGIGGNILQAKVALRKAKPAGQFQLKPDAVLDFIG 568
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
NLS++ + +G L + +E L + ++ + S ++L S KT + L+ ARGID
Sbjct: 569 NLSVQNLPGVGYSLATK-MEELGVKLVKDIRELSRERLTSTLGPKTGAKLWDYARGIDRT 627
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
V ++ KS+ + ++ +++ L E+ RL ++L K+
Sbjct: 628 EVGNEVMRKSVSAEVNW--GIRFVNQEQADDFVKSLCAELHRRLVENLVKGKQ 678
>gi|228472365|ref|ZP_04057130.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
gi|228276233|gb|EEK14968.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
Length = 367
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 161/383 (42%), Gaps = 89/383 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG-----IIAVNYEARHKGVTR 58
R I IDMD F+ VE NPSL G P+AV GGG + A +YEAR GV
Sbjct: 3 RKIIHIDMDAFFASVEQHDNPSLRGLPIAV-------GGGEARGVVAAASYEARRYGVRS 55
Query: 59 HMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYID 118
M G AKQ CP + K +YR ++ A+ E+
Sbjct: 56 AMAGAMAKQLCPSLIFV-------KPRFDRYREVSMQIRAIFHEY--------------- 93
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
TD+V P + DE Y D T N
Sbjct: 94 -TDLVE-----------------------PLSLDE-------------AYLDVTT----N 112
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
+D L A +I ++IRA + +T SAGI+ NK +AK+ +KP Q +P +
Sbjct: 113 KKD---LPSATLIAQQIRAKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPPQEI 169
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A L IKK + GK+ + + T +L SL++LQ++F + Y IAR
Sbjct: 170 LDFLAPLDIKKFYGI-GKVTAQKMYQKGIFTGADLRAKSLEELQTYF-GNNGEYFYQIAR 227
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
GI V + KSIG F +T + + + + ++EL +EV RL++ L K
Sbjct: 228 GIHLSAVQPFRLRKSIGVEHTF--ETNITSERFLEKPLKELCEEVALRLKEKKLLAK--- 282
Query: 359 QLLTVSF-TQETDGKVNSCSRSI 380
TV+ + +D K + SRSI
Sbjct: 283 ---TVTLKLKYSDFKQQTRSRSI 302
>gi|134078076|emb|CAK40159.1| unnamed protein product [Aspergillus niger]
Length = 1165
Score = 109 bits (272), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 149/364 (40%), Gaps = 65/364 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +D DCF+ V P L GKP+AV + T G I + NYEAR G+ M
Sbjct: 372 RYIMHVDFDCFFAAVSTLKRPELQGKPVAVA-HGTGSGSEIASCNYEARAHGIKNGMWMK 430
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CPE+++ VP D Y A R+ + + IV+ SIDEA +D+T
Sbjct: 431 GALQTCPELKV--VPY-----DFPAYEEASRKFYSAILSVDGIVQSVSIDEALVDITTQC 483
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E S G G+ E G +Y +
Sbjct: 484 LEAGGSDGR--------------------------GISE--GSLY--------------R 501
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
E A A I +E+RA V +T S GI N +LAK+ KP Q L +V
Sbjct: 502 EQARADEIADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIG 561
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
NL+++ + +G LG + +E L + ++ + +L + KT ++ ARGID
Sbjct: 562 NLTVQDLPGVGYSLGTK-LEDLGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRT 620
Query: 304 PVNARLVSKSIGC----CKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
V ++ KS+ RF +T ++ +C+ L L N + Q
Sbjct: 621 EVGNEVLRKSVSAEVNWGIRFVNQTQ----------AEDFVRSLCQELHRRLVENLVKGQ 670
Query: 360 LLTV 363
LT+
Sbjct: 671 QLTL 674
>gi|350639910|gb|EHA28263.1| hypothetical protein ASPNIDRAFT_43424 [Aspergillus niger ATCC 1015]
Length = 1165
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 149/364 (40%), Gaps = 65/364 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +D DCF+ V P L GKP+AV + T G I + NYEAR G+ M
Sbjct: 372 RYIMHVDFDCFFAAVSTLKRPELQGKPVAVA-HGTGSGSEIASCNYEARAHGIKNGMWMK 430
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CPE+++ VP D Y A R+ + + IV+ SIDEA +D+T
Sbjct: 431 GALQTCPELKV--VPY-----DFPAYEEASRKFYSAILSVDGIVQSVSIDEALVDITTQC 483
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E S G G+ E G +Y +
Sbjct: 484 LEAGGSDGR--------------------------GISE--GSLY--------------R 501
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
E A A I +E+RA V +T S GI N +LAK+ KP Q L +V
Sbjct: 502 EQARADEIADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIG 561
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
NL+++ + +G LG + +E L + ++ + +L + KT ++ ARGID
Sbjct: 562 NLTVQDLPGVGYSLGTK-LEDLGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRT 620
Query: 304 PVNARLVSKSIGC----CKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
V ++ KS+ RF +T ++ +C+ L L N + Q
Sbjct: 621 EVGNEVLRKSVSAEVNWGIRFVNQTQ----------AEDFVRSLCQELHRRLVENLVKGQ 670
Query: 360 LLTV 363
LT+
Sbjct: 671 QLTL 674
>gi|317031843|ref|XP_001393536.2| DNA damage repair protein Mus42 [Aspergillus niger CBS 513.88]
Length = 1155
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 152/364 (41%), Gaps = 65/364 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +D DCF+ V P L GKP+AV + T G I + NYEAR G+ M
Sbjct: 372 RYIMHVDFDCFFAAVSTLKRPELQGKPVAVA-HGTGSGSEIASCNYEARAHGIKNGMWMK 430
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CPE+++ VP D Y A R+ + + IV+ SIDEA +D+T
Sbjct: 431 GALQTCPELKV--VPY-----DFPAYEEASRKFYSAILSVDGIVQSVSIDEALVDITTQC 483
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E S G G+ E G +Y +
Sbjct: 484 LEAGGSDGR--------------------------GISE--GSLY--------------R 501
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
E A A I +E+RA V +T S GI N +LAK+ KP Q L +V
Sbjct: 502 EQARADEIADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIG 561
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
NL+++ + +G LG + +E L + ++ + +L + KT ++ ARGID
Sbjct: 562 NLTVQDLPGVGYSLGTK-LEDLGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRT 620
Query: 304 PVNARLVSKSIGC----CKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
V ++ KS+ RF +T +++ L E+ RL ++L + Q
Sbjct: 621 EVGNEVLRKSVSAEVNWGIRFVNQT------QAEDFVRSLCQELHRRLVENLV----KGQ 670
Query: 360 LLTV 363
LT+
Sbjct: 671 QLTL 674
>gi|453331644|dbj|GAC86558.1| DNA polymerase IV [Gluconobacter thailandicus NBRC 3255]
Length = 379
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 115/455 (25%), Positives = 182/455 (40%), Gaps = 105/455 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M SR I IDMD FY VE + NPSL G+PLAV + G + A +YEAR GV M
Sbjct: 1 MESRRIVHIDMDAFYASVEQRDNPSLRGRPLAVGRGEAR--GVVAAASYEARPFGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
AK+ CP +L VP+ + D+ YR ++ + + ++ +++ S+DEAY+DLT
Sbjct: 59 PSLTAKRLCP--DLVFVPA---RFDV--YRTVSAQIHEIFARYTPLIQPLSLDEAYLDLT 111
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D +LG S T
Sbjct: 112 D-----------------------------------------YLGAYGSAT--------- 121
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
++ E IR + +T SAG+++N+ LAKL KP ++
Sbjct: 122 ---------LVAESIRTDIRKETGLTASAGVSYNRFLAKLASDYRKPDGLFVITPRMGPD 172
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
A L++ + +G + + L T +L K L L +F K+A + + I+RGI
Sbjct: 173 FVAGLAVDQFHGIGPATARK-MRALGIETGADLRKLDLPTLTRYF-GKSALFYHGISRGI 230
Query: 301 DHEPVNARLVSKSIGCCKRF--------PGKTCLATRQDVSHWIQELADEVCERLEDDLT 352
D PV KS+G + + +T L W+Q ++ R +T
Sbjct: 231 DERPVVVNRERKSLGTEQTYLSDLKDENAARTALGLIA-TKLWLQAQRKQITGR---TVT 286
Query: 353 LNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTP 412
L + A ++ + VNS + + +V + P+ LTP
Sbjct: 287 LKVKYADFRQITRARTLPASVNSEA-----------VLADVGQSLFT------PLFPLTP 329
Query: 413 PLLFLGLSASKFSPL-----GSHPSIQQFF-KPQD 441
+ LGL+ S + S P +Q F +PQ+
Sbjct: 330 GVRLLGLTMSSLAGTDDALPDSTPQMQLLFEQPQN 364
>gi|254514854|ref|ZP_05126915.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR5-3]
gi|219677097|gb|EED33462.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR5-3]
Length = 373
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 159/354 (44%), Gaps = 72/354 (20%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
++R I +DMD FY VE + +P+L GKPLAV + K G + A +YEAR GV M
Sbjct: 8 STRKIIHVDMDAFYASVEQRDDPALRGKPLAVG--GSAKRGVVAAASYEARKFGVKSAMP 65
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
G A++ CP++ V+ + D+ YR+ R++ + + +++++E S+DEAY+D+T
Sbjct: 66 GVTARRRCPQLLF-----VKPRFDV--YRSVSRQLHEIFARYTDLIEPLSLDEAYLDVT- 117
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
DT+ M +
Sbjct: 118 -------------------------------------------------ADTAGMGSAT- 127
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
AIA I +IR + SAG+++NK +AK+ +KP ++ +
Sbjct: 128 ----AIAEAIRRDIR----DELCLTASAGVSYNKFIAKVASDQNKPDGVFVVRPGEGADF 179
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
A L ++ +G + E + TL + ++ SL L+ HF K+A +LY +RG D
Sbjct: 180 VAALPARRFYGVGPRTA-ERMSTLGIHSGADIRAQSLHFLEQHF-GKSAQYLYRASRGED 237
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
+ PV KSIG + + L +D+ ++ + D V ER++ +L +
Sbjct: 238 YRPVRPDRQRKSIGGERTYAEDLLLD--EDLRKALEHIIDIVWERIDRHRSLGR 289
>gi|355712656|gb|AES04422.1| polymerase , eta [Mustela putorius furo]
Length = 417
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 101/193 (52%), Gaps = 9/193 (4%)
Query: 290 ASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED 349
SWLY + RGI+H+PV R + K+IGC K FPGKT LAT++ V W+ +LA E+ ERL
Sbjct: 2 GSWLYAMCRGIEHDPVKPRKLPKTIGCSKNFPGKTALATQEQVQWWLLQLAHELEERLIK 61
Query: 350 DLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISD 409
D N R A L V + D +++S R AL Y + + VI N++ +D
Sbjct: 62 DRNDNDRVATQLAVIIRVQGDRRLSSTRRCCALTRYDAHKMSRDAFAVIRNCNTSGIKTD 121
Query: 410 LTPPLLFLGLSASKFSPLGSHPS----IQQFFK--PQDHPE-PMTSEHSSLPEQSTNHDS 462
+PPL + L A+KFS S PS I F P P+ P+TS + P +
Sbjct: 122 WSPPLTMVFLCATKFS--TSAPSSCTDITTFLSNDPSSLPKVPVTSSEAKTPCGPAVTAT 179
Query: 463 KKRDKTLLNFNQQ 475
KK +L +F Q+
Sbjct: 180 KKPTTSLESFFQK 192
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 19/108 (17%)
Query: 934 IADSSTVDSAINIADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISN 993
+A ST+ + +A +I C+KC + + E+ EH DYHFALEL + P+S+++ +
Sbjct: 321 VAQKSTI-TPNPVASEDQIPCEKCGSLVPVWEMPEHMDYHFALELQKSFLQPHSSNSEAV 379
Query: 994 SSSS------SKILNKKSSKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
+SS K + S+KR RP + ++T++ FFKP
Sbjct: 380 PASSPQSKRNPKSPSASSNKRPRP------------EGMQTLESFFKP 415
>gi|402772897|ref|YP_006592434.1| DNA polymerase IV (Pol IV) [Methylocystis sp. SC2]
gi|401774917|emb|CCJ07783.1| DNA polymerase IV (Pol IV) [Methylocystis sp. SC2]
Length = 457
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 133/313 (42%), Gaps = 70/313 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE + NP L GKP+AV + + G + A +YEAR GV M
Sbjct: 105 RKIIHVDMDAFYASVEQRDNPELRGKPVAV--GGSRERGVVAAASYEARAFGVRSAMPSV 162
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AK++CPE+ K Y++ R++ ++ +E++ IVE S+DEAY+D+T
Sbjct: 163 TAKRNCPELIFM-------KPRFDVYKDVSRQIRSIFAEYTPIVEPLSLDEAYLDVT--- 212
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E +K + T T + E+
Sbjct: 213 -ENLKGMA---------------------------------------TATRIAED----- 227
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
I IRA +T SAG+++NK LAKL KP ++
Sbjct: 228 -------IRARIRA----ETGLTASAGVSYNKFLAKLASDYRKPDGLFVITPKMGPAFVE 276
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L + K H G + L T L+L+ +L LQ HF K+ + Y+I+RG+D
Sbjct: 277 ALQVGKF-HGVGPATTTKMNRLGIETGLDLKAQTLAFLQRHF-GKSGVYYYWISRGVDDR 334
Query: 304 PVNARLVSKSIGC 316
PV KS+G
Sbjct: 335 PVRPDRARKSMGA 347
>gi|293610008|ref|ZP_06692309.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827240|gb|EFF85604.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 351
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/399 (26%), Positives = 167/399 (41%), Gaps = 78/399 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+IR + T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------QIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVATFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ LQ T+ +L+K L HF K LY A+GIDH
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLQLHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDHR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
PV A + I F LA Q +W Q LA++V + LE LN R +
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQ--PYW-QGLAEKVWQTLEKK-QLNARGVNIKLK 287
Query: 364 SFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
+T S R I LQD+++V ++N+
Sbjct: 288 LKNFQTLQHSKSFKRPIQ----SLQDLIQVLFLLLNEMQ 322
>gi|337755270|ref|YP_004647781.1| DNA polymerase IV [Francisella sp. TX077308]
gi|336446875|gb|AEI36181.1| DNA polymerase IV [Francisella sp. TX077308]
Length = 349
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/348 (29%), Positives = 148/348 (42%), Gaps = 71/348 (20%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 4 TRKIIHIDMDYFFAQVEEKTNPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVHSAMPT 62
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A Q CP++ L D +KY+ + + F+ VE S+DEAY+D+TDV
Sbjct: 63 AIALQKCPDLILLN-------TDFAKYKADSAIIREIFYSFTTKVEPLSLDEAYLDVTDV 115
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
VY ++ T
Sbjct: 116 T-------------------------------------------VYKNSAT--------- 123
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
IA I +EI +KT SAG+A NK+LAK+ ++KP ++ V+
Sbjct: 124 ---LIALAIKQEI----FNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQVNDFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
NL +KK+ + GK+ E ++++ T +L++ L L F K S LY ARGID+
Sbjct: 177 KNLPVKKLFGV-GKVSQEKLKSMNVETCSDLQQLRLATLVDKF-GKFGSSLYNYARGIDN 234
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD 350
VN + KS+ + L T + + L D++ R+ D+
Sbjct: 235 REVNPVRIRKSVSVENTYLED--LKTLEACLEKLPSLYDKLTSRITDE 280
>gi|418324714|ref|ZP_12935944.1| DNA polymerase IV [Staphylococcus pettenkoferi VCU012]
gi|365224987|gb|EHM66242.1| DNA polymerase IV [Staphylococcus pettenkoferi VCU012]
Length = 356
Score = 107 bits (268), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 154/348 (44%), Gaps = 73/348 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIA-VNYEARHKGVTRH 59
M R I IDMD FY QVE + NP L GKP+ V G G+++ +YEAR GV
Sbjct: 1 MAERRIIHIDMDYFYAQVEMRDNPDLKGKPVIVG--GKASGRGVVSTASYEARKYGVHSA 58
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M +A + CP+ KYR A ++++A+ ++ IVE S+DEAY+D+
Sbjct: 59 MPMAQAHKLCPDGYYV-------TPRFDKYREASQQIMAIFRSYTEIVEPLSLDEAYLDI 111
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
T +V + AS+++ E R+ +Y T
Sbjct: 112 THLVRP------DLPASRIA-------------EFIRR--------DIYEQT-------- 136
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
Q A AGV ++NK LAKL G++KP +++ ++V
Sbjct: 137 ---QLTASAGV---------------------SYNKFLAKLASGMNKPNNLTVIDYNNVH 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+ NL+I R + G +E + T +L S ++L F +K LY ARG
Sbjct: 173 EILMNLNIGGFRGV-GPTTEEKMHANGIYTGKDLYDKSERELIRLFGKK-GHGLYNKARG 230
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
ID PV + + KS+G + F T + + V + I EL+ + ERL
Sbjct: 231 IDESPVKSERIRKSVGTERTFA--TDMNDDEQVLNKIWELSTKTAERL 276
>gi|374261495|ref|ZP_09620077.1| DNA-damage inducible protein P [Legionella drancourtii LLAP12]
gi|363538122|gb|EHL31534.1| DNA-damage inducible protein P [Legionella drancourtii LLAP12]
Length = 367
Score = 107 bits (268), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 139/311 (44%), Gaps = 69/311 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMDCFY +E + P L KP+AV + + G I NYEAR GV M
Sbjct: 17 RKIIHIDMDCFYAAIEMRDFPWLADKPVAV-GGDAARRGVIATCNYEARKFGVRSAMPTA 75
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A + C + L V + D+ Y+ + + A+ +E+++++E S+DEAY+D+T+ +
Sbjct: 76 QALKLCRHLILQPV-----RMDV--YQKESQYIRAIFAEYTDLIEPLSLDEAYLDVTESI 128
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ + G W+ Q
Sbjct: 129 NCK--------------------------------GSATWIAQ----------------- 139
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
EIRA + Q SAGIA NK LAK+ HKP Q ++ +
Sbjct: 140 ----------EIRARIFQIRQLTASAGIAPNKSLAKIASDWHKPNGQMVIRPEDIDAFML 189
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
NL ++K+ +G K+ + + T T ++L+++S++ L + F L+ +ARG+D+
Sbjct: 190 NLPVRKLFGVGPKM-EARLRTYNIKTCIDLQRYSVEYLVNEF-GIMGERLFELARGVDNR 247
Query: 304 PVNARLVSKSI 314
PVN + KSI
Sbjct: 248 PVNPERIRKSI 258
>gi|399924340|ref|ZP_10781698.1| DNA polymerase IV [Peptoniphilus rhinitidis 1-13]
Length = 348
Score = 107 bits (268), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 115/440 (26%), Positives = 184/440 (41%), Gaps = 105/440 (23%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG----GIIA-VNYEARHKGVTRHMRGD 63
+D+D FY VE + SL GKP+ V GG GI+ NY AR G+ M
Sbjct: 7 VDIDAFYASVEELDDKSLIGKPVVV-------GGKSNHGIVTTANYVARKYGIHSAMPMY 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AK C L +P R +Y REV VL ++ ++E+ SIDE+Y+D+
Sbjct: 60 MAKNLCDH--LIIMPMRR-----DRYLEKSREVFDVLKTYTKVIEKVSIDESYLDIE--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
G G D N
Sbjct: 110 ---------------------GLGYDEN-------------------------------- 116
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IV EI+ V ++T + S G+++NK LAKL +KP+ I+ + + +
Sbjct: 117 -------IVYEIQKDVYNRTGLNVSIGMSYNKFLAKLASDWNKPKGIMIIKKRDIPEILF 169
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L I+KV +G K ++ + + +T+ EL S L S F +K+ +Y RGID+
Sbjct: 170 PLDIRKVHGIGKK-SEKKLRNIGINTVEELYSLSYDFLVSMF-KKSGEEIYNRIRGIDNR 227
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
V V KS+G F + R ++ +++E + E+ E DL + + LT+
Sbjct: 228 KVTPNTVRKSLGTETTFE---VTSKRDELIGYLKEFSHEISE----DLIVKEISGYTLTL 280
Query: 364 SFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASK 423
E D KV + S++ A Y DI + S+++ ++ L +G++ S
Sbjct: 281 KMKNE-DFKVKTRSKTYEKAIYAEDDIYKKSLEIFDEAYGG-------EKLRLIGITISN 332
Query: 424 FSPLGSHPSIQQ--FFKPQD 441
+ L SI+Q FFK ++
Sbjct: 333 LADL----SIRQLSFFKGEE 348
>gi|320583613|gb|EFW97826.1| DNA polymerase eta, putative [Ogataea parapolymorpha DL-1]
Length = 598
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 177/405 (43%), Gaps = 49/405 (12%)
Query: 5 IIALIDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+I ID++ ++ Q E L P P+ +Q+N+ +IAV+Y AR G++R
Sbjct: 31 VIGHIDINAYFAQYEQIRLGLTPQ---DPVVCLQWNS-----LIAVSYAAREYGISRMDS 82
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKY-----------------RNAGREVIAVLSEFS 104
AK CP++ + D+ KY R R+++ F
Sbjct: 83 LQTAKLKCPDVVAAHTAVFKKGEDVWKYVDYLPEPVDHKVSLEPYRRESRKMMRFFKGFC 142
Query: 105 NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNND---EDARKAGVM 161
+ VE+AS+DE ++DL +V+ +M + + N P + E G
Sbjct: 143 DSVEKASVDECFLDLGRMVYSKMMELFPLLREIPENPRDTMLPPIPDKLPPELEETHGFF 202
Query: 162 EWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLV 221
+ + D ++ + +D + I + E+R + + + S G+ K +AKL
Sbjct: 203 -----IPVENDAVIVSDWDDIA-MMIGSSLGYELRRKLKKEMGYTTSFGVGRVKTVAKLA 256
Query: 222 CGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQC-STMLEL----EKF 276
KP +Q+ + ++ + N S+ +GGK+G +++ETLQ S E+ + F
Sbjct: 257 SDFKKPNEQTTVFNRAIDNFFDNFSLTDFWSMGGKIGRQILETLQVDSGSREVRYIRDNF 316
Query: 277 SLKQLQSHFEE-KTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
SL L + + A LY + RG +P+ R KS+G K F G + ++ +D+ W
Sbjct: 317 SLADLTRELRDPQLAERLYRMVRGEMRQPIKQRTDVKSMGSHKNFRGNS-VSKPEDILDW 375
Query: 336 IQELADEVCERLE--DDLTLNKRRAQLLTVSFTQETDGKVNSCSR 378
+ ++ RL+ D+ + KRR LT+ + +CSR
Sbjct: 376 FKVFIVDLVLRLQELDEESDAKRRPTKLTLYMRNRAN---VTCSR 417
>gi|452751626|ref|ZP_21951371.1| DNA polymerase IV [alpha proteobacterium JLT2015]
gi|451960845|gb|EMD83256.1| DNA polymerase IV [alpha proteobacterium JLT2015]
Length = 362
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 148/346 (42%), Gaps = 77/346 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHMRG 62
R I +DMD F+ VE + NP L GKP+AV K G++A +YEAR GV M
Sbjct: 9 RKIIHVDMDAFFASVEQRDNPDLRGKPVAV---GGSKARGVVAAASYEARVFGVRSAMPS 65
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A++ CP++ V+ + D+ YR+ +++ + + ++++E
Sbjct: 66 VTAQRLCPDLIF-----VKSRFDV--YRSVSQQIREIFARHTDLIE-------------- 104
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
P + DE Y D S TE
Sbjct: 105 -------------------------PLSLDE-------------AYLDVTASGRPATE-- 124
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
I EIRA +LS T+ SAG+++NK LAKL +KP ++ +
Sbjct: 125 --------IAREIRAEILSTTRLTASAGVSYNKFLAKLASDQNKPDGLCVIRPHEGAAFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
A L +K+ H G + +E T +L S + LQ +F ++A + Y ARGIDH
Sbjct: 177 AGLPVKRF-HGVGPVTAAKMERFGIRTGADLAAKSREWLQGNF-GRSADYYYGAARGIDH 234
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
PV A V KSIG + F TR D+ ++ + + V ER++
Sbjct: 235 RPVRASRVRKSIGAERTF--SEDFRTRADLLAALEPVIEAVWERID 278
>gi|46447454|ref|YP_008819.1| DNA polymerase IV [Candidatus Protochlamydia amoebophila UWE25]
gi|81626453|sp|Q6MA55.1|DPO4_PARUW RecName: Full=DNA polymerase IV; Short=Pol IV
gi|46401095|emb|CAF24544.1| probable DNA polymerase IV [Candidatus Protochlamydia amoebophila
UWE25]
Length = 350
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 138/323 (42%), Gaps = 87/323 (26%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHK 54
MT R I IDMD FY VE + +PSL KP+AV GG G+IA NY AR
Sbjct: 1 MTLRKIIHIDMDAFYASVEMRDDPSLVLKPIAV-------GGDPDKRGVIATANYLARKF 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M +AKQ CP++ + P D KY+ + + + F++++E S+DE
Sbjct: 54 GVRSAMPSWKAKQLCPDL-IILFP------DFDKYKRESKAIHEIFHLFTDLIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
A++D+TDV DA + G W+ Q
Sbjct: 107 AFLDVTDV-------------------------------DALR-GSATWIAQ-------- 126
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
EIR + + SAG+A NK LAK+ HKP Q +L
Sbjct: 127 -------------------EIRQLIWKERGLTASAGVAPNKFLAKVASDWHKPNGQFVLT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASW 292
V +L ++K+ +G + ++ + + C +L+ + LQ F + +W
Sbjct: 168 PKEVDAFMVHLPVEKIFGIGHVMAKKLHSLGLMNCG---DLQTLDITTLQKLFGSR--AW 222
Query: 293 -LYYIARGIDHEPVNARLVSKSI 314
LY + RGIDH V + + KS+
Sbjct: 223 NLYELCRGIDHRFVISDRIRKSL 245
>gi|47207447|emb|CAF91845.1| unnamed protein product [Tetraodon nigroviridis]
Length = 257
Score = 107 bits (267), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 119/249 (47%), Gaps = 36/249 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPL-AVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII D+DCFY QVE NP+L PL + + I+ NY AR GVT+ M
Sbjct: 1 RIILHFDLDCFYAQVEMIRNPALREVPLEPYLSSGIQQKYIIVTCNYVAREMGVTKLMSV 60
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP++ L V+G+ D++ YR +V +L + +VER DE ++D+T++
Sbjct: 61 ANAKEKCPQLVL-----VKGE-DLTHYREVSYKVTELLMSYCPLVERLGFDENFMDVTEM 114
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V R+ S+L +F G VY + D
Sbjct: 115 VERRLAE-----TSELDISFK---------------------GHVYGHVSAEV--KATDH 146
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSML 241
LA+ I E+R A+ K AGIA NK+LAKLV G KP +Q S+LP++ ++
Sbjct: 147 ARLALGSHIAAELREAIHCKLGLTGCAGIATNKLLAKLVSGTFKPNQQTSLLPENISDIV 206
Query: 242 YANLSIKKV 250
S++KV
Sbjct: 207 GCLSSLRKV 215
>gi|358372217|dbj|GAA88822.1| DNA damage repair protein Mus42 [Aspergillus kawachii IFO 4308]
Length = 1166
Score = 107 bits (267), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 160/396 (40%), Gaps = 77/396 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +D DCF+ V P L GKP+AV + T G I + NYEAR G+ M
Sbjct: 373 RYIMHVDFDCFFAAVSTLKRPELQGKPVAVA-HGTGSGSEIASCNYEARAHGIKNGMWMK 431
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CPE+++ VP D Y A R+ + + IV+ SIDEA +D+T
Sbjct: 432 GALQTCPELKV--VPY-----DFPAYEEASRKFYSAILSVDGIVQSVSIDEALVDITTQC 484
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E S G G+ E G +Y +
Sbjct: 485 LEAGGSDGR--------------------------GISE--GSLY--------------R 502
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
E A A + +++RA V +T S GI N +LAK+ KP Q L +V
Sbjct: 503 EQARADEVADDLRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDYIG 562
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
NL+++ + +G LG + +E L + ++ + + +L + KT ++ ARGID
Sbjct: 563 NLTVQDLPGVGYSLGTK-LEDLGVKIVKDVRELTRDRLTTSLGPKTGIKIWEYARGIDRT 621
Query: 304 PVNARLVSKSIGC----CKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
V ++ KS+ RF +T ++ +C+ L L N + Q
Sbjct: 622 EVGNEVLRKSVSAEVNWGIRFVNQTQ----------AEDFVRSLCQELHRRLVENLVKGQ 671
Query: 360 LLTVSFTQET------------DGKVNSCSRSIALA 383
LT+ + GK + ++S+AL
Sbjct: 672 QLTLKVMRRALDAPLEPVKHLGHGKCDVFNKSVALG 707
>gi|427426239|ref|ZP_18916302.1| putative DNA polymerase IV [Acinetobacter baumannii WC-136]
gi|425696945|gb|EKU66638.1| putative DNA polymerase IV [Acinetobacter baumannii WC-136]
Length = 351
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 104/399 (26%), Positives = 166/399 (41%), Gaps = 78/399 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVATFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ LQ T+ +L+K L HF K LY A+GIDH
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLQLHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDHR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
PV A + I F LA Q +W Q LA++V + LE LN R +
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQ--PYW-QGLAEKVWQTLEKK-QLNARGVNIKLK 287
Query: 364 SFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
+T S R I LQD+++V ++N+
Sbjct: 288 LKNFQTLQHSKSFKRPIQ----SLQDLIQVLFLLLNEMQ 322
>gi|428182887|gb|EKX51746.1| Rev1 DNA replication-coupled repair [Guillardia theta CCMP2712]
Length = 357
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 146/349 (41%), Gaps = 66/349 (18%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNT----WKGGGIIAVNYEARHKGVTR 58
RIIA +DMDCF+C V K L G+P+AV + + I + NY AR GV
Sbjct: 41 GRIIAHVDMDCFFCSVGVKGRSELQGQPVAVCWGDATSENAQHAEISSANYVARKFGVRA 100
Query: 59 HMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYID 118
M +AK+ CP+ L +P + KY + + L + V+ S+DEA+ D
Sbjct: 101 GMFIGKAKELCPQ--LITIPY-----EFDKYTSTAETMYRCLFAITPHVQGVSVDEAFAD 153
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
+T +V AG EN
Sbjct: 154 ITSLV----------------------------------AG-----------------EN 162
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
++ +E+ IA + IR +L T S G A N+ LAK+ KP +P+ +V
Sbjct: 163 VQNLKEVVIA--VANRIRKEILEATGCPASVGCAGNRFLAKIATSQAKPDGSFFIPKENV 220
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A L + K+ +G D++ L+ ++ +L LQ F EKT L+ +R
Sbjct: 221 LDFLAELPVSKLPGVGYNTVDKLSNRLEVHSVQDLRNRPRAFLQEQFGEKTGRLLFEFSR 280
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
GID+ P +R + KS+G + +V +I++L+ EV R+
Sbjct: 281 GIDNRPWESRPIRKSVGA--QITWGVRFNEMSEVFQFIEKLSAEVSSRM 327
>gi|260642817|ref|ZP_05417443.2| DNA-directed DNA polymerase [Bacteroides finegoldii DSM 17565]
gi|260620434|gb|EEX43305.1| putative DNA polymerase IV [Bacteroides finegoldii DSM 17565]
Length = 363
Score = 107 bits (266), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 154/348 (44%), Gaps = 74/348 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MTHRKILHIDMDAFYASVEQRDNPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP++ V G+ D+ Y+ R+ I E + + T
Sbjct: 59 SSQKAKRLCPQLIF-----VHGRMDV--YKAVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 96 DIIE-----------------------PLSLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
+ + +++A I +EI+ + + SAG+++NK LAK+ KP +I P+ ++
Sbjct: 113 NKKGISLAVDIAKEIKQKIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPEQALD 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+ A L I+ +G + + L L+L K SL+ L +HF K + Y ARG
Sbjct: 173 FI-ARLPIESFWGVGPVTAKK-MHLLGIRNGLQLRKCSLEMLTAHF-GKVGALYYECARG 229
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
ID PV A + KSIGC + + ++TR V + +A E+ ERL
Sbjct: 230 IDERPVEAVRIRKSIGCERTL--ERDISTRSSVIIELYHVAVELVERL 275
>gi|375136727|ref|YP_004997377.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter calcoaceticus PHEA-2]
gi|325124172|gb|ADY83695.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter calcoaceticus PHEA-2]
Length = 351
Score = 107 bits (266), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 104/399 (26%), Positives = 166/399 (41%), Gaps = 78/399 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHP--RAVIAAASYPARKFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVATFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ LQ T+ +L+K L HF K LY A+GIDH
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLQLHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDHR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
PV A + I F LA Q +W Q LA++V + LE LN R +
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQ--PYW-QGLAEKVWQTLEKK-QLNARGVNIKLK 287
Query: 364 SFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
+T S R I LQD+++V ++N+
Sbjct: 288 LKNFQTLQHSKSFKRPIQ----SLQDLIQVLFLLLNEMQ 322
>gi|336414991|ref|ZP_08595334.1| DNA polymerase IV [Bacteroides ovatus 3_8_47FAA]
gi|335941852|gb|EGN03703.1| DNA polymerase IV [Bacteroides ovatus 3_8_47FAA]
Length = 363
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 160/350 (45%), Gaps = 76/350 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MTQRKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP+ L VP G+ D+ Y++ R+ I E + + T
Sbjct: 59 ASQKAKRLCPQ--LIFVP---GRMDV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 96 DIIE-----------------------PLSLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
+ +++++A I +EI+ + + SAG+++NK LAK+ KP +I P+ ++
Sbjct: 113 NKKDISLAVDIAKEIKQKIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPEQALD 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IAR 298
+ A L I+ +G + + L L+L K SL+ L +HF + A LYY +R
Sbjct: 173 FI-ARLPIESFWGVGPVTAKK-MHLLGIHNGLQLRKCSLEMLTAHFGKAGA--LYYECSR 228
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
GID PV A + KSIG C+R + LA R V + +A E+ ERL+
Sbjct: 229 GIDERPVEAIRIRKSIG-CERTLERDILA-RSSVIIELYHVAVELIERLQ 276
>gi|149248740|ref|XP_001528757.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448711|gb|EDK43099.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 731
Score = 106 bits (265), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 178/409 (43%), Gaps = 80/409 (19%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
+IAL+D++ FY QVEC P+ Q+ + IIAV+Y AR G++R
Sbjct: 46 VIALVDLNAFYAQVECVRLGLSDEDPVVCQQWQS-----IIAVSYAARKYGISRLDTVHS 100
Query: 65 AKQHCPEIELCRVPSVRGKAD------------------ISKYRNAGREVIAVLSEFSNI 106
AK CP + +C V K D + YR R+++ ++ ++
Sbjct: 101 AKLKCPHL-ICAHAGVYKKGDSHWAYYPGSPSPVDHKVSLDTYRRESRKILRIVQSKFDL 159
Query: 107 VERASIDEAYIDLTDVV-----------HERMKSIGHIAASQLSNTFVVGFGPDNNDEDA 155
V++AS+DE+Y+DL V E M IG LS ++ P+ ED
Sbjct: 160 VDKASVDESYVDLGRAVFKLLLQKFPQLQEAMDKIGD-GGDPLS--LLLPNIPNKLPED- 215
Query: 156 RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVE--------------EIRAAVLS 201
++W G + +++D E ++D Q + + VI + ++R +
Sbjct: 216 -----LQWEGYI-AESDK---EMSDDGQTVDMPPVIEDWDDVTLLLGSQLLLDLRRTIYE 266
Query: 202 KTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEV 261
+ + SAG+A N+++AKL KP Q+I+ +++ N + + G +LG +
Sbjct: 267 ELGYTTSAGLARNRLVAKLSGDFKKPDNQTIVRNCALNRFLQNFELTDITGFGAQLGKSL 326
Query: 262 VETLQC-----STMLELEKFSLKQLQSHFEE--KTASWLYYIARGIDHEPVNARLVSKSI 314
+ QC S + ++ ++ + + A+ LY I RG+ + +++ KS+
Sbjct: 327 IVKFQCPSNTNSIAFIRDNYTQSMMREELRDDPELANKLYLIVRGLYPLELTSKVDVKSM 386
Query: 315 GCCKRFPGKT--CLATRQDVSHWIQELADEVCERLED------DLTLNK 355
K F + CL +D W+ A ++ RL D DL+L K
Sbjct: 387 MSTKNFRDNSPWCL---KDAYEWLTVYAGDLSNRLLDLDNESMDLSLTK 432
>gi|160887214|ref|ZP_02068217.1| hypothetical protein BACOVA_05231 [Bacteroides ovatus ATCC 8483]
gi|262408710|ref|ZP_06085256.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|293369209|ref|ZP_06615803.1| DNA polymerase IV [Bacteroides ovatus SD CMC 3f]
gi|294643992|ref|ZP_06721776.1| DNA polymerase IV [Bacteroides ovatus SD CC 2a]
gi|294807269|ref|ZP_06766083.1| DNA polymerase IV [Bacteroides xylanisolvens SD CC 1b]
gi|298481536|ref|ZP_06999728.1| ATP-NAD kinase [Bacteroides sp. D22]
gi|336406616|ref|ZP_08587266.1| DNA polymerase IV [Bacteroides sp. 1_1_30]
gi|345511231|ref|ZP_08790779.1| DNA polymerase IV [Bacteroides sp. D1]
gi|423212421|ref|ZP_17198950.1| DNA polymerase IV [Bacteroides xylanisolvens CL03T12C04]
gi|423288646|ref|ZP_17267497.1| DNA polymerase IV [Bacteroides ovatus CL02T12C04]
gi|156107625|gb|EDO09370.1| putative DNA polymerase IV [Bacteroides ovatus ATCC 8483]
gi|229444412|gb|EEO50203.1| DNA polymerase IV [Bacteroides sp. D1]
gi|262353575|gb|EEZ02669.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292635792|gb|EFF54290.1| DNA polymerase IV [Bacteroides ovatus SD CMC 3f]
gi|292640685|gb|EFF58919.1| DNA polymerase IV [Bacteroides ovatus SD CC 2a]
gi|294445567|gb|EFG14220.1| DNA polymerase IV [Bacteroides xylanisolvens SD CC 1b]
gi|295086999|emb|CBK68522.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacteroides xylanisolvens XB1A]
gi|298272400|gb|EFI13969.1| ATP-NAD kinase [Bacteroides sp. D22]
gi|335933875|gb|EGM95874.1| DNA polymerase IV [Bacteroides sp. 1_1_30]
gi|392669844|gb|EIY63330.1| DNA polymerase IV [Bacteroides ovatus CL02T12C04]
gi|392694867|gb|EIY88093.1| DNA polymerase IV [Bacteroides xylanisolvens CL03T12C04]
Length = 363
Score = 106 bits (265), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 159/350 (45%), Gaps = 76/350 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MTQRKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP+ L VP G+ D+ Y++ R+ I E + + T
Sbjct: 59 ASQKAKRLCPQ--LIFVP---GRMDV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 96 DIIE-----------------------PLSLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
+ +++++A I +EI+ + + SAG+++NK LAK+ KP +I P+ ++
Sbjct: 113 NKKDISLAVDIAKEIKQKIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPEQALD 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IAR 298
+ A L I+ +G + + L L+L K SL+ L +HF + A LYY +R
Sbjct: 173 FI-ARLPIESFWGVGPVTAKK-MHLLGIHNGLQLRKCSLEMLTAHFGKAGA--LYYECSR 228
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
GID PV A + KSIGC + + ++ R V + +A E+ ERL+
Sbjct: 229 GIDERPVEAIRIRKSIGCERTL--ERDISARSSVIIELYHVAVELIERLQ 276
>gi|294664551|ref|ZP_06729895.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292605685|gb|EFF48992.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 359
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 128/304 (42%), Gaps = 74/304 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARTFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D ++Y+ R+V + +++VE S+DEAY+D+T
Sbjct: 58 AVRAERLCPDAIF--VPP-----DFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQ 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
K G M+ +V T + E T+
Sbjct: 111 A----------------------------------KTG-MQLATEVAQSIRTQIREETQ- 134
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
SAGIA NK LAK+ KP Q ++ S V
Sbjct: 135 -----------------------LTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L + L++LQ+HF S LY ARGID
Sbjct: 172 LLPLKVNRIPGV-GKVMDGKLAALGIVTVADLRQRPLEELQAHFGSFGQS-LYRRARGID 229
Query: 302 HEPV 305
PV
Sbjct: 230 ERPV 233
>gi|444319076|ref|XP_004180195.1| hypothetical protein TBLA_0D01680 [Tetrapisispora blattae CBS 6284]
gi|387513237|emb|CCH60676.1| hypothetical protein TBLA_0D01680 [Tetrapisispora blattae CBS 6284]
Length = 670
Score = 106 bits (264), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 135/545 (24%), Positives = 227/545 (41%), Gaps = 104/545 (19%)
Query: 9 IDMDCFYCQVE---CKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
ID + F+ QVE C L P+ VQ+++ IIAV+Y AR G++R +A
Sbjct: 29 IDANAFFAQVEQVRCGLTID---DPVVCVQWSS-----IIAVSYAARKHGISRMDSIQDA 80
Query: 66 KQHCPEI------------------ELC---------RVPSVRGKADISKYRNAGREVIA 98
+ C + + C ++P+ K + YR GR+++
Sbjct: 81 MKKCKTLKPIHTAVFKKGENFWQYHDGCGSWVRDKSKQLPAEEYKVALEPYRREGRKILR 140
Query: 99 VLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN-----------TFVVGFG 147
V EF ++VE+AS+DE ++D + +++ + A+ +S+ FV G
Sbjct: 141 VFKEFVDLVEKASVDEVFLDFGRLCFQKLLFDPTLFANGVSSLEGEHKKNIQEMFVDG-E 199
Query: 148 PDNND---EDARKAGVMEWLGQVYSDTDTSLMENTEDFQE--LAIAGVIVEEIRAAVLSK 202
D ND E + + G VY + S +D+ + A+A I ++IR +
Sbjct: 200 YDLNDYLPEVPEHLKNISFDGLVYGIDEESTEPLIKDWDDVIFALASNISQQIRDYIKEN 259
Query: 203 TQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY--ANLSIKKVRHLGGKLGDE 260
+ S GIA K + KL KP Q+I+ + N I LGGKLG E
Sbjct: 260 VGYTTSCGIARTKSVCKLGSNFKKPDAQTIILNRKLENFLDNGNFEITSFWTLGGKLGKE 319
Query: 261 VVETLQCSTMLELEKF------SLKQLQSHFEEK--------------------TASWLY 294
+VE L L+ S K+LQ +E A ++
Sbjct: 320 LVEILNLPESGSLKYIRNMWPNSFKELQDKLDESLKDTMESNILTSIDESKTDILARKIF 379
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
IARGI PVNA+L+ KS+ K +C ++ D W++ + E+ R+++ L
Sbjct: 380 EIARGIYCNPVNAKLLVKSMMSNKNLRADSC-SSLIDAISWLEVFSGELNFRIQE---LE 435
Query: 355 KRRAQLL---TVS-------FTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSA 404
+ ++L T+S F Q T + SR ++ S DI+ +++ + +
Sbjct: 436 EEYGKILVPKTISIILRSEIFEQHTKAS-HFVSRGKSVTS---TDILRGGTKLMTELDKR 491
Query: 405 PPISDLTPPLLFLGLSASKFSPLGSHPSIQQFFKPQDHPEPMTSEHSSLPEQSTNHDSKK 464
+ PL L L S F + + SI F+ Q + + S++ T+ ++K
Sbjct: 492 GKSCESFYPLKSLSLVISNFEIIDAKKSIMNMFETQPKGIDIPLKSSAII---TSVNTKH 548
Query: 465 RDKTL 469
DKTL
Sbjct: 549 TDKTL 553
>gi|315660146|ref|ZP_07913003.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
gi|315494827|gb|EFU83165.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
Length = 359
Score = 106 bits (264), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 145/347 (41%), Gaps = 71/347 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD F+ QVE + NP L GKP+ +V G + +YEAR GV M
Sbjct: 1 MTERRIVHIDMDFFFAQVEMRDNPKLRGKPV-IVGGKASSRGVVSTASYEARKYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP+ V+G+ + KYR E++++ ++ VE S+DEAY+D
Sbjct: 60 PMSQAHKLCPDGYY-----VQGQYE--KYRTISNEIMSIFRSYTEAVEPMSLDEAYLD-- 110
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
I H+ LS
Sbjct: 111 ---------ITHLVRPDLS----------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I IR + KT SAG+++NK LAKL G++KP +++ +V
Sbjct: 121 -------ASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVIDYENVHK 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ L I + GK ++++ +L + + +L F K LY ARGI
Sbjct: 174 ILMALDIGDFPGV-GKASEKIMHKHGIYNGQDLYQKDVFELVRLF-GKRGRGLYNKARGI 231
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
D PV + + KS+G + F T + ++ + EL+ + ERL
Sbjct: 232 DDSPVKSSRIRKSVGTERTFA--TDVNDDDEILQKMWELSGKTAERL 276
>gi|237807578|ref|YP_002892018.1| DNA-directed DNA polymerase [Tolumonas auensis DSM 9187]
gi|237499839|gb|ACQ92432.1| DNA-directed DNA polymerase [Tolumonas auensis DSM 9187]
Length = 351
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 149/352 (42%), Gaps = 85/352 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHKGVT 57
R I +DMDCF+ VE + NP+L PLA+ GG G+IA NY AR GV
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALVSLPLAI-------GGSAERRGVIATCNYVARRYGVR 54
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M A + CP + L ++ Y R+V+ + + +S I+E+ SIDEAY+
Sbjct: 55 SAMATAYALRLCPRLVLL-------PGRMALYSEVSRQVMRIFARYSQIIEQVSIDEAYL 107
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D+ +D++L +
Sbjct: 108 DV---------------------------------------------------SDSTLFQ 116
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
+ A I E IRA + + Q SAG+A NK LAK+ +KP +L +
Sbjct: 117 GS--------ATRIAEAIRADIRQELQLTASAGVAPNKFLAKIASEQNKPDGLFVLSPAG 168
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V L++ K+ +GGK + +V+ L T ++++F +QL + KT L A
Sbjct: 169 VPPFVRQLALSKIPGIGGKTAERLVQ-LGLHTCADVQQFPRRQL-LYLLGKTGLMLLERA 226
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSH-WIQELADEVCERLE 348
GID P+ KS+G FP +++ H + EL E+ +RL+
Sbjct: 227 YGIDERPLQTSRERKSVGVETTFPIDI---VQEEQGHAMLPELLAELSKRLQ 275
>gi|423295136|ref|ZP_17273263.1| DNA polymerase IV [Bacteroides ovatus CL03T12C18]
gi|392673652|gb|EIY67108.1| DNA polymerase IV [Bacteroides ovatus CL03T12C18]
Length = 363
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 159/350 (45%), Gaps = 76/350 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MTQRKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP+ L VP G+ D+ Y++ R+ I E + + T
Sbjct: 59 ASQKAKRLCPQ--LIFVP---GRMDV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 96 DIIE-----------------------PLSLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
+ +++++A I +EI+ + + SAG+++NK LAK+ KP +I P+ ++
Sbjct: 113 NKKDISLAVDIAKEIKQKIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPEQALD 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IAR 298
+ A L I+ +G + + L L+L K SL+ L +HF + A LYY +R
Sbjct: 173 FI-ARLPIESFWGVGPVTAKK-MHLLGIHNGLQLRKCSLEMLTAHFGKAGA--LYYECSR 228
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
GID PV A + KSIGC + + ++ R V + +A E+ ERL+
Sbjct: 229 GIDERPVEAIRIRKSIGCERTL--ERDISARSSVIIELYHVAVELIERLQ 276
>gi|424744843|ref|ZP_18173126.1| putative DNA polymerase IV [Acinetobacter baumannii WC-141]
gi|422942623|gb|EKU37670.1| putative DNA polymerase IV [Acinetobacter baumannii WC-141]
Length = 351
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 166/399 (41%), Gaps = 78/399 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + +P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELREHPELRHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMT 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVATFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ LQ T+ +L+K L HF K LY A+GIDH
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLQLHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDHR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
PV A + I F L Q +W Q LA++V + LE LN R +
Sbjct: 232 PVQAERARQQISKETTFDSDFTLVQCQ--PYW-QGLAEKVWQTLEKK-QLNARGVNIKLK 287
Query: 364 SFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
+T S R I LQD+++V ++N+
Sbjct: 288 LKNFQTLQHSKSFKRPIQ----SLQDLIQVLFLLLNEMQ 322
>gi|323345436|ref|ZP_08085659.1| DNA-directed DNA polymerase IV [Prevotella oralis ATCC 33269]
gi|323093550|gb|EFZ36128.1| DNA-directed DNA polymerase IV [Prevotella oralis ATCC 33269]
Length = 381
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 159/369 (43%), Gaps = 80/369 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ VE + NP L GKP+A V Y+ + G + +YEAR GV M
Sbjct: 20 RKIIHIDMDAFFAAVEQRDNPDLRGKPIA-VGYDGPR-GVVTTASYEARKFGVHSAMSIA 77
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AKQ CP L VP+ R + YR EV + E++++VE SIDEA++D+T
Sbjct: 78 KAKQLCP--HLIIVPNRR-----NVYREISNEVHEIFQEYTDLVEPLSIDEAFLDVT--- 127
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
N+F + D
Sbjct: 128 ---------------HNSFNISLAQD---------------------------------- 138
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-PQSSVSMLY 242
IA I ++IR + SAGI++NK LAK+ KP ++ P ++ +
Sbjct: 139 ---IAKEIKDKIR----KRLNLTASAGISYNKFLAKIASDYRKPDGLMVIHPHRALDFI- 190
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+ L I+K +G K +++ + +L++ SL L F K+ + Y ARGID+
Sbjct: 191 SKLPIEKFWGVGPKTA-QIMHHIGIFNGAQLQEVSLHHLIETF-GKSGNIYYNFARGIDN 248
Query: 303 EPVNARLVSKSIGCCKRFPGKTCL--ATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
PV A + KS+GC F L A ++ H + EL+ + + + TL
Sbjct: 249 RPVIASAIRKSVGCEHTFLEDIRLNSAILIELYHIVTELSGRISKSKFNGRTLT------ 302
Query: 361 LTVSFTQET 369
L V FT T
Sbjct: 303 LKVKFTDFT 311
>gi|395830771|ref|XP_003788491.1| PREDICTED: DNA polymerase iota isoform 2 [Otolemur garnettii]
Length = 658
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 14/165 (8%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
+SR+IA +D+DCFY QVE NP L KPL V Q + ++ NYEAR GV + M
Sbjct: 47 FSSRVIAHLDLDCFYAQVEMISNPELRDKPLGVQQKFS-----VVTCNYEARKFGVKKCM 101
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
EAK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT
Sbjct: 102 PVREAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLKEFSPVVERLGFDENFVDLT 155
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG 165
++V +R++ + + +LS V G +N + +E LG
Sbjct: 156 EMVEKRLQ---QLQSDELSAVSVSGHVYNNQCIGYKTTKRLEALG 197
>gi|302684051|ref|XP_003031706.1| hypothetical protein SCHCODRAFT_55077 [Schizophyllum commune H4-8]
gi|300105399|gb|EFI96803.1| hypothetical protein SCHCODRAFT_55077 [Schizophyllum commune H4-8]
Length = 635
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 176/406 (43%), Gaps = 71/406 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL D D FY E +PL V+Q+N +IAVNY AR G++R +
Sbjct: 42 RVVALCDSDAFYAACEMVRLGVDKEQPLVVLQWNA-----LIAVNYPARKYGISRMDKLQ 96
Query: 64 EAKQHCPEIELCRVPSVR----------------GKADISKYRNAGREVIAVLSEFSNI- 106
+A + CP +++ V + + K + YR RE + S F +
Sbjct: 97 DALKRCPHLKVVHVATYKEGEKEPGYWDDVDTKTHKVSLDFYR---RESTKMQSLFKELL 153
Query: 107 ----VERASIDEAYIDLTDVVHERM-------KSIGHIAASQLSNTFVV-------GFG- 147
+E+ASIDEA+ D T + ++ S+ H A + G G
Sbjct: 154 PDVEIEKASIDEAFFDFTKLAKAKLLERFPYLASVPHDAPRGADSPLPPPPPLSWEGLGT 213
Query: 148 ------PDNNDEDARKAGVMEW-----LGQVYSDTDTSLMEN---TEDFQELAIAGVIVE 193
P + +++ K G E + S+ D +E+ T LAIA +
Sbjct: 214 VIPVHPPPDKEKERGKQGEDEHKDEDEVDAPESEDDAPNLEDDPTTWHDHALAIAAEYML 273
Query: 194 EIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKK---- 249
+ + + ++ + SAGI NK LAKL KP+ ++L +++ L +K
Sbjct: 274 KAKEEIYARLGYTTSAGIGRNKFLAKLTASYRKPRGLNVLRNAAIPNYLRPLPFQKAGTS 333
Query: 250 --VRHLGGKLGDEVVETLQCSTM--LELEKFSLKQLQSHFEEKTASWLY-YIARGIDHEP 304
+R LGGKLG + + ST+ L ++ +++Q F E++ W+Y + RGID
Sbjct: 334 FSIRFLGGKLGKAIAQEYDASTVGDLFVDAPVTEEMQQKFGEESI-WVYEVLRRGIDRNE 392
Query: 305 VNAR-LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED 349
V + + KS+ K P A D W++ LA E+ RL+D
Sbjct: 393 VKEKTALFKSMLASKNLPKPITNAA--DGHQWLRVLAAELALRLKD 436
>gi|423217476|ref|ZP_17203972.1| DNA polymerase IV [Bacteroides caccae CL03T12C61]
gi|392628635|gb|EIY22661.1| DNA polymerase IV [Bacteroides caccae CL03T12C61]
Length = 363
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 157/349 (44%), Gaps = 74/349 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD FY VE + +P L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MVQRKIIHIDMDAFYASVEQRDHPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP+ L VP G+ D+ Y++ R+ I E + + T
Sbjct: 59 SSQKAKRLCPQ--LIFVP---GRMDV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 96 DIIE-----------------------PLSLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
+ + +++A I +EI+ + + SAGI++NK LAK+ KP +I P+ ++
Sbjct: 113 NKKGISLAVDIAKEIKQKIREQLNLVASAGISYNKFLAKIASDYRKPDGLCTIHPEQALE 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+ A L I+ + G + + + L L+L K SL+ L +HF K S Y ARG
Sbjct: 173 FI-ARLPIESFWGV-GPVTAKRMHLLGIRNGLQLRKCSLETLTAHF-GKVGSLYYECARG 229
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
ID PV A + KSIGC + + +++R V + +A E+ ERL+
Sbjct: 230 IDERPVEAVRIRKSIGCERTL--ERDISSRSSVIIELYHMAVELIERLQ 276
>gi|398827094|ref|ZP_10585309.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
gi|398220334|gb|EJN06787.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
Length = 353
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 132/318 (41%), Gaps = 70/318 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + NP+L G P+AV + G + +YEAR GV M
Sbjct: 3 RKIIHIDMDAFYASVEQRDNPALRGLPIAV--GGSGARGVLTTASYEARKFGVHSAMPSV 60
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A + CP + K + YR+ ++ I E + D T +V
Sbjct: 61 TAARKCPSLIFV-------KPRLEVYRDVSQQ----------------IREIFCDYTPLV 97
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ TE+ +
Sbjct: 98 E-----------------------PLSLDE--------------------AYLDVTENLK 114
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+ IA I EIRA +L+ T SAGI++NK LAK+ L+KP Q+++P +
Sbjct: 115 GMEIATEIASEIRARILAVTGLTASAGISYNKFLAKIASDLNKPNGQAVIPPKTGPSFIQ 174
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L +KK H G E + L T +L++ S + L HF K ++ Y IARGID+
Sbjct: 175 RLPVKKF-HGVGPATAEKMHQLGIETGADLKQRSFEFLSQHF-GKAGAYFYGIARGIDNR 232
Query: 304 PVNARLVSKSIGCCKRFP 321
V KSIG FP
Sbjct: 233 DVQPDRKRKSIGAEDTFP 250
>gi|410944344|ref|ZP_11376085.1| DNA polymerase IV [Gluconobacter frateurii NBRC 101659]
Length = 379
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 134/315 (42%), Gaps = 70/315 (22%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M SR I IDMD FY VE + NPSL G+PLAV + G + A +YEAR GV M
Sbjct: 1 MESRRIVHIDMDAFYASVEQRDNPSLRGRPLAVGRGEAR--GVVAAASYEARPFGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP +L VP G+ D+ YR ++ + + ++ +++ S+DEAY+DLT
Sbjct: 59 PSLKAKRLCP--DLVFVP---GRFDV--YRAVSAQIHDIFARYTPLIQPLSLDEAYLDLT 111
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D +LG S T
Sbjct: 112 D-----------------------------------------YLGAYGSAT--------- 121
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+A I +IR +T SAG+++N+ LAKL KP ++
Sbjct: 122 -----LVAERIRADIR----KETGLTASAGVSYNRFLAKLASDYRKPDGLFVITPGMGPD 172
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
L++ + +G + + L T +L K L L HF K+A + + I+RGI
Sbjct: 173 FVTGLTVDQFHGIGPATAQK-MRALGIETGADLRKVDLPTLMRHF-GKSAPFYHGISRGI 230
Query: 301 DHEPVNARLVSKSIG 315
D PV KS+G
Sbjct: 231 DERPVVVNRERKSLG 245
>gi|153809307|ref|ZP_01961975.1| hypothetical protein BACCAC_03620 [Bacteroides caccae ATCC 43185]
gi|149128077|gb|EDM19298.1| putative DNA polymerase IV [Bacteroides caccae ATCC 43185]
Length = 363
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 157/349 (44%), Gaps = 74/349 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD FY VE + +P L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MVQRKIIHIDMDAFYASVEQRDHPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP+ L VP G+ D+ Y++ R+ I E + + T
Sbjct: 59 SSQKAKRLCPQ--LIFVP---GRMDV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 96 DIIE-----------------------PLSLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
+ + +++A I +EI+ + + SAGI++NK LAK+ KP +I P+ ++
Sbjct: 113 NKKGISLAVDIAKEIKQKIRDQLNLVASAGISYNKFLAKIASDYRKPDGLCTIHPEQALE 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+ A L I+ + G + + + L L+L K SL+ L +HF K S Y ARG
Sbjct: 173 FI-ARLPIESFWGV-GPVTAKRMHLLGIRNGLQLRKCSLETLTAHF-GKVGSLYYECARG 229
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
ID PV A + KSIGC + + +++R V + +A E+ ERL+
Sbjct: 230 IDERPVEAVRIRKSIGCERTL--ERDISSRSSVFIELYHMAVELIERLQ 276
>gi|423302099|ref|ZP_17280122.1| DNA polymerase IV [Bacteroides finegoldii CL09T03C10]
gi|408471190|gb|EKJ89722.1| DNA polymerase IV [Bacteroides finegoldii CL09T03C10]
Length = 363
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 153/348 (43%), Gaps = 74/348 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MTHRKILHIDMDAFYASVEQRDNPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP++ V G+ D+ Y+ R+ I E + + T
Sbjct: 59 SSQKAKRLCPQLIF-----VHGRMDV--YKAVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 96 DIIE-----------------------PLSLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
+ + +++A I +EI+ + + SAG+++NK LAK+ KP +I P+ ++
Sbjct: 113 NKKGISLAVDIAKEIKQKIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPEQALD 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+ A L I+ +G + + L L+L K SL+ L +HF K + Y ARG
Sbjct: 173 FI-ARLPIESFWGVGPVTAKK-MHLLGIRNGLQLRKCSLEMLTAHF-GKVGALYYECARG 229
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
ID PV + KSIGC + + ++TR V + +A E+ ERL
Sbjct: 230 IDERPVEVVRIRKSIGCERTL--ERDISTRSSVIIELYHVAVELVERL 275
>gi|299771913|ref|YP_003733939.1| DNA polymerase IV [Acinetobacter oleivorans DR1]
gi|298702001|gb|ADI92566.1| DNA polymerase IV [Acinetobacter oleivorans DR1]
Length = 351
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 165/399 (41%), Gaps = 78/399 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVASFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ LQ T+ +L+K L HF K LY A+GIDH
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLQLHTLGDLQKIEEAILVHHF-GKYGQQLYLYAQGIDHR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
PV A + I F L Q +W Q LA++V + LE LN R +
Sbjct: 232 PVQAERARQQISKETTFDSDFTLVQCQ--PYW-QGLAEKVWQSLEKK-QLNARGVNIKLK 287
Query: 364 SFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
+T S R I LQD+++V ++N+
Sbjct: 288 LKNFQTLQHSKSFKRPIQ----SLQDLIQVLFLLLNEMQ 322
>gi|221043678|dbj|BAH13516.1| unnamed protein product [Homo sapiens]
Length = 660
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 92/164 (56%), Gaps = 14/164 (8%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 50 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 104
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 105 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 158
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG 165
+V +R++ + + +LS V G +N + A +E LG
Sbjct: 159 MVEKRLQ---QLQSDELSAVTVSGHVYNNQCIGYKTAKCLEALG 199
>gi|262280632|ref|ZP_06058415.1| nucleotidyltransferase/DNA polymerase [Acinetobacter calcoaceticus
RUH2202]
gi|262257532|gb|EEY76267.1| nucleotidyltransferase/DNA polymerase [Acinetobacter calcoaceticus
RUH2202]
Length = 351
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 149/353 (42%), Gaps = 74/353 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELREQPELRHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVANFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ LQ T+ +L+K L HF K LY A+GIDH
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLQLHTLGDLQKIEEAILVHHF-GKYGQQLYLYAQGIDHR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
PV A + I F LA Q +W Q LA++V + LE LN R
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQ--PYW-QGLAEKVWQSLEKK-QLNAR 280
>gi|441602789|ref|XP_004087758.1| PREDICTED: DNA polymerase iota isoform 2 [Nomascus leucogenys]
Length = 660
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 92/164 (56%), Gaps = 14/164 (8%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 50 SSRVIVHMDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 104
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 105 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 158
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG 165
+V +R++ + + +LS V G +N + A +E LG
Sbjct: 159 MVEKRLQ---QLQSDELSAVTVSGHVYNNQCIGYKTAKCLEALG 199
>gi|237721489|ref|ZP_04551970.1| DNA damage-inducible protein [Bacteroides sp. 2_2_4]
gi|229449285|gb|EEO55076.1| DNA damage-inducible protein [Bacteroides sp. 2_2_4]
Length = 363
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 144/318 (45%), Gaps = 74/318 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MTQRKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP+ L VP G+ D+ Y++ R+ I E + + T
Sbjct: 59 ASQKAKRLCPQ--LIFVP---GRMDV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 96 DIIE-----------------------PLSLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
+ +++++A I +EI+ + + SAGI++NK LAK+ KP +I P+ ++
Sbjct: 113 NKKDISLAVDIAKEIKQKIREQLNLVASAGISYNKFLAKIASDYRKPDGLCTIHPEQALD 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IAR 298
+ A L I+ +G + + L L+L K SL+ L +HF + A LYY +R
Sbjct: 173 FI-ARLPIESFWGVGPVTAKK-MHLLGIHNGLQLRKCSLEMLTAHFGKAGA--LYYECSR 228
Query: 299 GIDHEPVNARLVSKSIGC 316
GID PV A + KSIGC
Sbjct: 229 GIDERPVEAIRIRKSIGC 246
>gi|260061439|ref|YP_003194519.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
gi|88785571|gb|EAR16740.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
Length = 366
Score = 104 bits (260), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 143/344 (41%), Gaps = 72/344 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ VE + P L G+P+AV K G + A +YEAR GV M G
Sbjct: 8 RKIIHIDMDAFFASVEQRDQPELRGRPIAV--GGGAKRGVVAAASYEARTFGVRSAMSGV 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CPE+ K +YR R++ + +++ TD+V
Sbjct: 66 QARRLCPELVFV-------KPRFDRYREVSRQIRGI----------------FLEYTDLV 102
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ T + +
Sbjct: 103 E-----------------------PLSLDE--------------------AYLDVTANRK 119
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+ A +I EIR +L +T SAGI+ NK +AK+ +KP Q +P V
Sbjct: 120 GMPSATLIAREIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKTVPPEDVQEFLE 179
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L I+K H GK+ E + L T +L + S L HF K+ Y + RG+
Sbjct: 180 SLEIRKF-HGVGKVTAEKMNALGIFTGADLRRQSEHFLTGHF-GKSGHHYYRVVRGVHDS 237
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
PV V KS+G + F L++ + + ++A+E+ RL
Sbjct: 238 PVQPSRVPKSLGAERTF--SENLSSEVFMVEKLTKIAEELSRRL 279
>gi|403215041|emb|CCK69541.1| hypothetical protein KNAG_0C04390 [Kazachstania naganishii CBS
8797]
Length = 630
Score = 104 bits (260), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 123/514 (23%), Positives = 212/514 (41%), Gaps = 97/514 (18%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
+A IDM+ F+ QVE +P+ VQ+++ IIAV+Y AR ++R + A
Sbjct: 26 LAHIDMNAFFAQVEQIRCGYSKDEPVVCVQWSS-----IIAVSYAARKFNISRMDTIESA 80
Query: 66 KQHCPEIELCRVPSVRG---------------------------KADISKYRNAGREVIA 98
+ CP + + K + YR R+++
Sbjct: 81 MEKCPSLVPIHTAVFKKGENFWQYHDGFGSWSKDPKKQLSPEFYKVSLDPYRRESRKILK 140
Query: 99 VLSEFSNIVERASIDEAYIDLTDVVHERMKSI-------GHIAASQLSNTFVVGFGPDNN 151
+ EF ++VE+AS+DE ++DL + +R+ + + ++L + FV G
Sbjct: 141 IFKEFCDVVEKASVDEVFLDLGRICFQRLMELDSSEREPAVMNFNELKDLFVRG----KY 196
Query: 152 DEDARKAGVMEWL------GQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 205
D D++ + E L G V+ + + SL + D +A V EIR + +
Sbjct: 197 DLDSKLPSIPEELKSLKFHGFVFQEENASLTD--WDDVIFWLASKYVLEIRTCIQDTLGY 254
Query: 206 HCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY--ANLSIKKVRHLGGKLGDEVVE 263
S G+A K+L KL KP Q I+ +++ I LGG LG ++V+
Sbjct: 255 STSCGVARTKMLCKLGSNFKKPDAQVIILNKNINAFLDCGKFDITSFWTLGGLLGKQLVD 314
Query: 264 TL-------------QCSTMLELEKFSLKQL----------QSHFE--EKTASWLYYIAR 298
L T EL F ++ +S FE + A LY I+R
Sbjct: 315 ILNLPSNRSINYIRENWQTPQELTTFITAEIKHTNFIPEHNKSDFERVDILAQKLYDISR 374
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
G P+N + V K++ K GK C ++ D W++ E+ R+++ L +
Sbjct: 375 GQFVTPLNPKPVVKTMMSNKNMRGKAC-SSLIDCISWLEVFCGELDSRVKE---LEREYN 430
Query: 359 QLL---TVSFTQETDGKVNS------CSRSIALASYKLQDIVEVSMQVINKTNSAPPISD 409
+++ TV+ + TD V+ RS +L S +D+++ +++I + N+
Sbjct: 431 KVIMPKTVTVSLRTDKYVSFRKSGPLVHRSRSLNS---EDLLKTGIKLITELNTKYNNKQ 487
Query: 410 LTP---PLLFLGLSASKFSPLGSHPSIQQFFKPQ 440
P PL L LS S F + +I F Q
Sbjct: 488 ACPNYYPLKNLNLSISNFEIMDIQKTIIDMFGNQ 521
>gi|338215016|ref|YP_004646508.1| DNA polymerase IV [Runella slithyformis DSM 19594]
gi|336309135|gb|AEI52232.1| DNA polymerase IV [Runella slithyformis DSM 19594]
Length = 355
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 139/317 (43%), Gaps = 70/317 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + +PSL GKP+AV + G + A +YEAR GV M
Sbjct: 3 RKIIHIDMDAFYASVEQRDDPSLRGKPVAVG--GSSDRGVVAAASYEARKYGVRSAMSSK 60
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A + CP + V+ + ++ KY ++ + +EF+ ++E S+DEAY+D+T+ +
Sbjct: 61 VAARKCPALIF-----VKPRFEVYKY--VSEQIRGIFAEFTPLIEPLSLDEAYLDVTENL 113
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
++M+S IA + ++E T Q
Sbjct: 114 -KKMRSATLIA----------------------------------QEIKQRIVETT---Q 135
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
A AGV ++NK LAKL KP ++ A
Sbjct: 136 LTASAGV---------------------SYNKFLAKLASDFRKPNGIYVIGPDEGEAFVA 174
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
NL++ K H GK+ E + L T ++L+ + L++HF K S+ Y IARGID
Sbjct: 175 NLTVNKF-HGIGKVTAEKMNQLGIQTGMDLKSKTEFFLRTHF-GKMGSYYYNIARGIDQR 232
Query: 304 PVNARLVSKSIGCCKRF 320
PV A + KS+G F
Sbjct: 233 PVEADRIRKSVGSENTF 249
>gi|414884035|tpg|DAA60049.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 378
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 83/131 (63%), Gaps = 12/131 (9%)
Query: 175 LMENTEDFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI 232
L ++ D+Q+ L +IV ++R VL +TQF CSAGIAHNK+LAKLV G+HKP +Q++
Sbjct: 40 LCQSEADYQDKLLPCGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTV 99
Query: 233 LPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKT--- 289
+P SSV L A+L +KK++ LGGKLG + + L T+ +L F+ ++LQ + T
Sbjct: 100 VPSSSVQDLLASLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGHG 159
Query: 290 -------ASWL 293
A+WL
Sbjct: 160 MVAAFARAAWL 170
>gi|383114620|ref|ZP_09935382.1| DNA polymerase IV [Bacteroides sp. D2]
gi|313693672|gb|EFS30507.1| DNA polymerase IV [Bacteroides sp. D2]
Length = 363
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 156/349 (44%), Gaps = 74/349 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MTQRKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP++ V G+ D+ Y++ R+ I E + + T
Sbjct: 59 SSQKAKRLCPQLIF-----VSGRMDV--YKSISRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 96 DLIE-----------------------PLSLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
+ +++++A I +EI+ + + SAG+++NK LAK+ KP +I P+ ++
Sbjct: 113 NKKDISLAVDIAKEIKQKIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPEQALD 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+ A L I+ + G + + + L L+L K SL+ L HF K + Y +RG
Sbjct: 173 FI-ARLPIESFWGV-GPVTAKKMHLLGIHNGLQLRKCSLEMLTGHF-GKAGTLYYECSRG 229
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
ID PV A + KSIGC + + ++ R V + +A E+ ERL+
Sbjct: 230 IDERPVEAIRIRKSIGCERTL--ERDISARSSVIIELYHVAVELIERLQ 276
>gi|403668164|ref|ZP_10933441.1| DNA polymerase IV [Kurthia sp. JC8E]
Length = 408
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 167/403 (41%), Gaps = 88/403 (21%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
I+ IDM+CFY VE LNP L GKP+AV + G I+ +YEAR G+ MR E
Sbjct: 3 ILFHIDMNCFYASVEQSLNPRLKGKPVAVGGDPKERRGVIVTCSYEARALGIYTTMRVTE 62
Query: 65 AKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
A + CP++ + K + +YR A +++ +L ++ +VE SIDE Y+D++D+V
Sbjct: 63 AVKMCPQLIVL-------KPNFERYREASKKMFDILRSYTPLVEPVSIDEGYMDVSDLV- 114
Query: 125 ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE 184
N E R A V++ Q +E
Sbjct: 115 -------------------------NGKEAIRLAAVIQQRLQ----------------KE 133
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN 244
L + CS GIA NK LAK + KP ++L + V +
Sbjct: 134 LDLP------------------CSIGIAPNKFLAKTASDMKKPLGITVLRKREVPHVLWQ 175
Query: 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEP 304
L + + H GK + ++TL T+ +L L+ F K L+ A GID
Sbjct: 176 LPVIDM-HGIGKSTAQKLKTLHIQTIGDLATCDEAMLKKEF-GKNGVRLFERANGIDRRA 233
Query: 305 VNARLV--SKSIGCCKRFPGKTCLA----TRQDVSHWIQELADEVCERLEDD-LTLNKRR 357
V+ V +KS+G T LA + + + I LA +V RL+ L
Sbjct: 234 VDPESVFDTKSVG------NSTTLAENIVSLRKLEETISSLASKVASRLQSKFLAGTTLS 287
Query: 358 AQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINK 400
QL T + Q T S+S A YK DI + ++ K
Sbjct: 288 LQLRTADWKQITR------SKSFTNALYKQNDIAREAKELARK 324
>gi|167645987|ref|YP_001683650.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167348417|gb|ABZ71152.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 373
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 139/345 (40%), Gaps = 79/345 (22%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R I IDMD FY VE + +PSL G+PLAV + G + A +YEAR GV M
Sbjct: 4 ARKIIHIDMDAFYASVEQRDDPSLRGRPLAVGHGA--RRGVVAAASYEARKFGVRSAMPS 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A CP+ L VP Y+ R++ A+ + D TD+
Sbjct: 62 TTALAKCPQ--LIFVPP-----RFEVYKAVSRQIHAIFA----------------DYTDL 98
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
+ P + DE + ++ T +
Sbjct: 99 IE-----------------------PLSLDE--------------------AYLDVTANR 115
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
+ LA A EIRA +L T SAGI++NK LAKL KP Q ++P
Sbjct: 116 RGLATATDTALEIRARILETTGLTASAGISYNKFLAKLASDQRKPNGQFVVPPGKGEAFV 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L I + +G + + +++L T +L + SL LQ HF K+ W Y IARG DH
Sbjct: 176 QTLPIGRFYGVGA-VTEAKMKSLDIHTGEDLHRQSLAFLQQHF-GKSGPWYYAIARGEDH 233
Query: 303 EPVNARLVSKSIGCCKRF--------PGKT-CLATRQDVSHWIQE 338
VN V KS G F P + LA DV W Q+
Sbjct: 234 RRVNPDRVRKSSGSETTFDQDHIAPEPIEAGVLAMADDVWAWCQK 278
>gi|88705924|ref|ZP_01103633.1| DNA polymerase IV [Congregibacter litoralis KT71]
gi|88699995|gb|EAQ97105.1| DNA polymerase IV [Congregibacter litoralis KT71]
Length = 410
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 151/344 (43%), Gaps = 72/344 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE + +P+L GKPLAV + K G + A +YEAR GV M G
Sbjct: 47 RKIIHVDMDAFYASVEQRDDPALRGKPLAVG--GSAKRGVVAAASYEARKFGVKSAMPGV 104
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A++ CP++ K YR +++ + + +++I+E S+DEAY+D+T
Sbjct: 105 TARRRCPQLLFV-------KPRFEVYRAVSQQLHGIFARYTHIIEPLSLDEAYLDVT--- 154
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ G G + T++ E
Sbjct: 155 -----------------ADLAGLG-----------------------SATAIAE------ 168
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
AI G I E+R SAG+++NK +AK+ +KP ++ + A
Sbjct: 169 --AIRGDIRRELR--------LTASAGVSYNKFIAKVASDQNKPDGVFVVRPEEGAAFVA 218
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L ++ +G K E + +L T ++ +L L+ HF K+A +LY +RG D+
Sbjct: 219 TLPARRFFGVGPKTA-ERMSSLGIQTGADIRAQTLGFLEQHF-GKSAHYLYRASRGEDYR 276
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
V A KSIG + + L+T + + ++ + D V ER+
Sbjct: 277 AVKADRERKSIGGERTY--SDDLSTDEALRDALEHIIDIVWERI 318
>gi|348688715|gb|EGZ28529.1| hypothetical protein PHYSODRAFT_552269 [Phytophthora sojae]
Length = 608
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 119/433 (27%), Positives = 190/433 (43%), Gaps = 81/433 (18%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
S+ I ++DMD FY VE + +P L PLAV N I NY AR GV M G
Sbjct: 83 SKTIVVVDMDMFYAAVEMRDDPKLCDVPLAVGGMNM-----ISTTNYAARQFGVRAAMPG 137
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
K+ CPE+ VP ++ KY +V AV +++ E S+DEA +DLTD
Sbjct: 138 FIGKELCPELHF--VP-----VNMEKYAGVAAQVRAVFAQYDPNFEAFSLDEACLDLTDY 190
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V + + +A D ++ + +W +
Sbjct: 191 VAKNWQKYASVALD------------DFESKEEVQEEEEQW--------------PSTPA 224
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP--QSSVSM 240
AIA +V E+R + TQ SAGIA N +LAK+ ++KP Q +LP + V
Sbjct: 225 GRAAIAAAVVRELRQKIFDCTQLTASAGIAVNAMLAKICSDMNKPNGQYVLPFTRERVLT 284
Query: 241 LYANLSIKKVRHLGGKLGDEVV-ETLQCSTMLELEKFSLKQLQSH-FEEKTASWLYYIAR 298
+L ++K+ + GK+ ++++ E L T EL F+ + H F EKTA WL +
Sbjct: 285 FLCDLPVRKIGGI-GKVTEKILNEALGVHTGGEL--FNQRGKIFHLFTEKTAVWLLQTSL 341
Query: 299 GI-------DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDL 351
G+ + + + +S+ K K CL EVC+ L DL
Sbjct: 342 GVRERREKQERKSFSRERTFRSLSDPKELEAK-CL---------------EVCKMLAKDL 385
Query: 352 TLNKRRAQLLTVSFTQETDGKVNSCSRSIALAS--YKLQDIVEVSMQVINKTNSAPPISD 409
+ A+ +T + ++TD CSRS+ LAS + +D+ +++++ + +
Sbjct: 386 EKANKAAKNVTFVY-KDTD--FARCSRSVTLASAIFTAEDLYSSAVELLRR--------E 434
Query: 410 LTPPLLFLGLSAS 422
L L LG+ A+
Sbjct: 435 LPLTLRLLGVRAA 447
>gi|296222689|ref|XP_002757294.1| PREDICTED: DNA polymerase iota isoform 2 [Callithrix jacchus]
Length = 659
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 14/164 (8%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 49 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 103
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 104 VRVAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 157
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG 165
+V +R++ + + +LS V+G +N + +E LG
Sbjct: 158 MVEKRLQ---QLQSDELSAVTVLGHVYNNQCIGCKTTKCLEALG 198
>gi|74418676|gb|ABA03151.1| chimeric Dpo4 [synthetic construct]
Length = 353
Score = 103 bits (257), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 139/313 (44%), Gaps = 69/313 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQY-NTWKGGGIIA-VNYEARHKGVTRHMRG 62
I+ +D D F+ QVE LNP L GKP+AV + +K G IA NYEAR G+ M
Sbjct: 2 IVLFVDFDYFFAQVEEVLNPELKGKPVAVCVFSGRFKDSGAIATANYEARKLGIKSGMPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+AK+ P + + D+ K + + R + +LS++S+ +E ASIDEAY+D+TD
Sbjct: 62 PKAKEIAPNAIYLPI-----RKDLYK-QVSDRIMYGILSKYSSKIEIASIDEAYLDITDR 115
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V + + A QL G DE
Sbjct: 116 VKD------YYEAYQL--------GKKIKDE----------------------------- 132
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
+ K + + GIA NKV AK++ ++KP IL V
Sbjct: 133 ----------------IYQKEKITVTIGIAPNKVFAKIIAEMNKPNGLGILKPEEVEGFI 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L I++V +G + ++ E ++ + ++ K ++L+ + AS+LY +AR
Sbjct: 177 RSLPIEEVPGVGDSIYSKLKE-MEIKYLYDVLKVDFEKLKKEIGKSKASYLYSLARDEYF 235
Query: 303 EPVNARLVSKSIG 315
EPV R V KSIG
Sbjct: 236 EPVKER-VRKSIG 247
>gi|358340778|dbj|GAA48604.1| DNA polymerase eta subunit [Clonorchis sinensis]
Length = 452
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 73/113 (64%)
Query: 251 RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLV 310
R+LGGKLG ++E T+ +L + SL QL F EKTA WLY + RG D + V R +
Sbjct: 26 RNLGGKLGVAIMERFGIQTLGQLTEISLTQLTEVFGEKTAQWLYELCRGHDPDAVTPRSI 85
Query: 311 SKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
++S+GC K F G++ L + Q + +W++ L+DE+ ERL DD +++R A LT+
Sbjct: 86 AQSVGCSKNFVGRSILTSTQSIEYWLRCLSDELVERLIDDRRIHQRHATRLTL 138
>gi|304317842|ref|YP_003852987.1| DNA-directed DNA polymerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779344|gb|ADL69903.1| DNA-directed DNA polymerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 378
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 175/428 (40%), Gaps = 99/428 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHMRG 62
R I +DMD F+ VE NP L GKP+ V G G+++ +YEAR G+ M
Sbjct: 2 RKIIHVDMDAFFASVEQHDNPKLKGKPVIV---GGLSGRGVVSTCSYEARKYGIHSAMPM 58
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK CP V +YR ++V +L E +NIVE SIDEAY+D+TD+
Sbjct: 59 YMAKTLCPH-------GVFLPVRFERYREVSKKVFDILYEITNIVEPLSIDEAYLDVTDI 111
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
D N ED
Sbjct: 112 --------------------------DKNPED---------------------------- 117
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
I +EI+ V T SAG+++NK LAK+ +KP ++ + V +
Sbjct: 118 --------IAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPDGLMVISEDMVPDIL 169
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
LS+ KV +G K E ++ + + +L K S ++L + F K +Y RGID
Sbjct: 170 RPLSVSKVYGIGEK-SSERLKKIGIEKVDDLLKLSEEELTNIF-GKYGKEIYDRIRGIDL 227
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQD----VSHWIQELADEVCERL-EDDLTLNKRR 357
PV +KSIG +T L D +S +++ + + L E+ L
Sbjct: 228 RPVETYRETKSIG------KETTLKKDTDDIDLLSKYLKRFSKIISSELKEERLYCRTVT 281
Query: 358 AQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFL 417
++ T FT V++ SR++ +DI V+ ++ + S ++ P+ +
Sbjct: 282 VKIKTSHFT------VHTKSRTLNEYIDSPEDIYNVATAILKE-------SKISQPVRLI 328
Query: 418 GLSASKFS 425
GLS S S
Sbjct: 329 GLSVSNLS 336
>gi|403268066|ref|XP_003926108.1| PREDICTED: DNA polymerase iota isoform 2 [Saimiri boliviensis
boliviensis]
Length = 659
Score = 102 bits (255), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 14/164 (8%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 49 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 103
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 104 VRAAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 157
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG 165
+V +R++ + + +LS V G +N + +E LG
Sbjct: 158 MVEKRLR---QLQSDELSAVTVSGHVYNNQCIGYKTTKCLEVLG 198
>gi|399910703|ref|ZP_10779017.1| DNA polymerase IV [Halomonas sp. KM-1]
Length = 349
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 145/351 (41%), Gaps = 77/351 (21%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIA-VNYEARHKGVTRHMR 61
SR I D DCFY VE + NP+L PLA+ + +G G+IA NY AR G+ M
Sbjct: 2 SRKILHADCDCFYAAVEMRDNPALREVPLAI--GGSAEGRGVIATCNYPARAYGIRSAMP 59
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A + CP + L K D +YR A ++++A+ E + +VE S+DEA++D+TD
Sbjct: 60 TARALRLCPHLTLL-------KGDFDRYREASQQLLAIFHELTPLVEPLSLDEAFLDVTD 112
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
V R +G W+ + + E
Sbjct: 113 VT--------------------------------RFSGSATWMARWLKE---------EC 131
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
F+ + I S G A K LAK+ KP +++ V
Sbjct: 132 FKRVGIT------------------VSVGAAPAKFLAKIASDWEKPDGLTVIAPDQVDAF 173
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + K+ +G +ETL+ +T +L++ L++L F K L+ ++RGID
Sbjct: 174 LRQLPVTKLHGVGPATAKR-LETLEIATCEDLQQVPLERLLQEF-GKFGRRLFELSRGID 231
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLT 352
PV KS+ F D++ ++L + +CERLE L
Sbjct: 232 ERPVRIERERKSVSVETTFASDL-----PDLAQCYEQL-NPLCERLEARLA 276
>gi|403337853|gb|EJY68151.1| DNA polymerase eta [Oxytricha trifallax]
Length = 606
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 124/258 (48%), Gaps = 34/258 (13%)
Query: 77 VPSVR-----------GKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 125
+P+VR K ++KYR +++ ++ +S +VE+AS DEAY+D+T+ V+
Sbjct: 148 IPAVRRFRIEQRDKESQKVSLAKYREESKKIFGIVQRYSQLVEKASCDEAYVDVTNQVNL 207
Query: 126 RMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQV---YSDTDTSLMENTEDF 182
+ + + N F P N +A W Y + + TE
Sbjct: 208 KYQQ-------EHDNIF-----PKNYTTEA-------WCNSYFMSYPKGEGLFIPETEYE 248
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
++L IA I IR + + Q++ S GI+HNK +AKL +KP Q+++P +
Sbjct: 249 KKLFIANQIAYSIRQDIKRELQYNASCGISHNKTMAKLASANNKPNAQTVVPIRYMKRAM 308
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
++ I VR GGK+G E + +TM ++++ S++ LQ + TA W+ ++ GI +
Sbjct: 309 KDVKIDSVRFCGGKVG-ESLHNAGLTTMGQIQETSIEDLQLIVSQSTAQWIKDLSDGICY 367
Query: 303 EPVNARLVSKSIGCCKRF 320
E V R + + K F
Sbjct: 368 EEVKERNLPTTANAVKTF 385
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCP 70
MD +Y QVE KL+ KP+ V+Q+N+ ++A+NY A+ GV R MR EA + CP
Sbjct: 1 MDAYYAQVEMKLHNLDPSKPMGVIQWNS-----LVALNYAAKDMGVKRSMRHFEALEVCP 55
Query: 71 EIELCRVPSV 80
+I V ++
Sbjct: 56 DITFVHVATM 65
>gi|74418674|gb|ABA03150.1| chimeric Dpo4 [synthetic construct]
Length = 353
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 140/313 (44%), Gaps = 69/313 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQY-NTWKGGGIIA-VNYEARHKGVTRHMRG 62
I+ +D D F+ QVE LNP L GKP+AV + +K G IA NYEAR G+ M
Sbjct: 2 IVLFVDFDYFFAQVEEVLNPELKGKPVAVCVFSGRFKDSGAIATANYEARKLGIKSGMPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+AK+ P + + D+ K + + R + +LS++S+ +E ASIDEAY+D+TD
Sbjct: 62 PKAKEIAPNAIYLPI-----RKDLYK-QVSDRIMYGILSKYSSKIEIASIDEAYLDITDR 115
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V + + A QL G DE
Sbjct: 116 VKD------YYEAYQL--------GKKIKDE----------------------------- 132
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
+ K + + GIA NKV AK++ ++KP IL V
Sbjct: 133 ----------------IYQKEKITVTIGIAPNKVFAKIIAEMNKPNGLGILKPEEVEGFI 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L I++V +G + ++ E ++ + ++ K ++L+ + AS+LY +AR +
Sbjct: 177 RSLPIEEVPGVGDSIYSKLKE-MEIKYLYDVLKVDFEKLKKEIGKSKASYLYSLARDEYN 235
Query: 303 EPVNARLVSKSIG 315
EP+ R V KSIG
Sbjct: 236 EPIRTR-VRKSIG 247
>gi|297584530|ref|YP_003700310.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
gi|297142987|gb|ADH99744.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
Length = 429
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 143/356 (40%), Gaps = 88/356 (24%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII +DM+ FY VE +PSL GKPLA+ + G ++ +YEAR KGV M
Sbjct: 4 SRIIFHVDMNSFYASVEAAYDPSLRGKPLAIAGNAKERRGIVVTASYEARAKGVKPPMPL 63
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EA++ CP + L R P D +YR R++ +L ++ +VE SIDE
Sbjct: 64 WEAEKACPGL-LVRPP------DFDRYRTMSRKMFEILYSYTPLVEPVSIDEG------- 109
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
Y D E T
Sbjct: 110 ---------------------------------------------YMDVTNVHFEGT--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
L +A +I + I S G+A NK LAK+ + KP ++L + V +
Sbjct: 122 HGLELAKIIQDHI----YHDLHLPSSIGVAPNKFLAKMASDMKKPMGITVLRKREVPDIL 177
Query: 243 ANLSIKKVRHLGGKLGDEV-------VETL-QCSTMLELEKFSLKQLQSHFEEKTASWLY 294
L ++ +G K D++ +E L + EKF + + H EK
Sbjct: 178 WPLRAVEMHGVGEKTADKLSRLGLFTIEDLAKADPFFLTEKFGVAGKRMH--EK------ 229
Query: 295 YIARGIDHEPVNARLVS--KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
A GID PV+ + KSIG P T A RQD++ ++ L+D V RL+
Sbjct: 230 --ANGIDFRPVDPESIHDFKSIGNSTTLPKDT--ANRQDITRILRNLSDSVSRRLK 281
>gi|393781200|ref|ZP_10369401.1| DNA polymerase IV [Bacteroides salyersiae CL02T12C01]
gi|392677535|gb|EIY70952.1| DNA polymerase IV [Bacteroides salyersiae CL02T12C01]
Length = 361
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/346 (28%), Positives = 150/346 (43%), Gaps = 76/346 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 3 RKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAMSSQ 60
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP L VP G+ ++ Y++ R + + E+++I+E S+DEA++D+T+
Sbjct: 61 KAKRLCP--HLIFVP---GRMEV--YKSVSRRIHEIFHEYTDIIEPLSLDEAFLDVTE-- 111
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
KAG+
Sbjct: 112 --------------------------------NKAGIF---------------------- 117
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSMLY 242
+A I +EI+ + + SAG+++NK LAK+ KP +I P +++ +
Sbjct: 118 ---LAVDIAKEIKKRIRGELNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQAMNFIG 174
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IARGID 301
A L I+ +G + + TL L+L SL L F + A LYY ARG+D
Sbjct: 175 A-LPIESFWGVGPVTAKK-MHTLGIHNGLQLRMCSLDMLVRQFGKVGA--LYYDFARGVD 230
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
PV + KSIGC + L + + + +A E+ ERL
Sbjct: 231 LRPVEVVRIRKSIGCERTLEKDISLHSSVIIE--LYHVAVELVERL 274
>gi|23099313|ref|NP_692779.1| DNA polymerase IV [Oceanobacillus iheyensis HTE831]
gi|38372232|sp|Q8EQ56.1|DPO4_OCEIH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|22777542|dbj|BAC13814.1| DNA damage inducible protein [Oceanobacillus iheyensis HTE831]
Length = 419
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 10/143 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII IDM+CFY VE NPSL GKPLA+ + G I+ +YEAR KGV M
Sbjct: 10 RIIFHIDMNCFYASVEMAHNPSLKGKPLAIAGNPEERKGIIVTSSYEARGKGVKTTMPIW 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L R + +YR A RE+ +L+E + V+ SIDE Y+D+TD +
Sbjct: 70 QAKKLCPDLILMR-------PNFDRYRAASREIFKMLAEITPYVQPVSIDEGYMDITDTI 122
Query: 124 HERMKSIGHIAASQLSNTFVVGF 146
+ + + A+QL + G
Sbjct: 123 YAKDPL---VTANQLQQRILSGL 142
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Query: 190 VIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKK 249
V +++ +LS CS GIA NK LAK+ + KP ++L + V L +S+++
Sbjct: 129 VTANQLQQRILSGLDIPCSIGIAPNKFLAKMASDMKKPLGITVLRKREVEKLLWPMSVEE 188
Query: 250 VRHLGGKLGDEVVETLQCSTMLELEK---FSLKQLQSHFEEKTASWLYYIARGIDHEPVN 306
+ +G K + + +++ T+ +L K + LKQL E+ L A GID+ V+
Sbjct: 189 MYGIGEKTAQK-LNSIEIKTIGDLAKKNVYELKQLLGVNGER----LQNRANGIDNRLVD 243
Query: 307 ARLVS--KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
V KSIG + P + T ++ I EL D V R++
Sbjct: 244 PEAVHDFKSIGSSQTLPHDSTDVT--ELMQLIHELVDNVERRVK 285
>gi|417643636|ref|ZP_12293673.1| DNA polymerase IV [Staphylococcus warneri VCU121]
gi|445059261|ref|YP_007384665.1| DNA polymerase IV [Staphylococcus warneri SG1]
gi|330685556|gb|EGG97202.1| DNA polymerase IV [Staphylococcus epidermidis VCU121]
gi|443425318|gb|AGC90221.1| DNA polymerase IV [Staphylococcus warneri SG1]
Length = 356
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 152/350 (43%), Gaps = 77/350 (22%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD F+ QVE + NP L GKP+ +V G + +YEAR GV M
Sbjct: 1 MEERRIIHIDMDYFFAQVEMRDNPKLKGKPV-IVGGKASNRGVVSTASYEARKYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + YR A ++++ + ++ IVE S+DEAY+D+T
Sbjct: 60 PMSQAHKLCPNGYYV-------TSRFDAYREASKKIMDIFRSYTEIVEPLSLDEAYLDIT 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+V + AS+++N F+ R+ ++E TE
Sbjct: 113 HLVRP------DLPASKIAN-FI------------RR----------------DILEQTE 137
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
SAG+++NK LAKL G++KP +++ ++V
Sbjct: 138 ------------------------LTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHD 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL---EKFSLKQLQSHFEEKTASWLYYIA 297
+ NL I + + GK ++V+ Q +L ++F L +L K LY
Sbjct: 174 ILMNLDIGEFPGV-GKASEKVMHDNQIFNGQDLYNKDEFELIRLFG----KRGRGLYNKV 228
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
RGIDH V + + KS+G + F T + ++ + EL+ + ERL
Sbjct: 229 RGIDHNEVKSTRIRKSVGTERTFA--TDVNDDDEILRKVWELSGKTAERL 276
>gi|384141455|ref|YP_005524165.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii MDR-ZJ06]
gi|385235754|ref|YP_005797093.1| DNA polymerase IV [Acinetobacter baumannii TCDC-AB0715]
gi|387125587|ref|YP_006291469.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acinetobacter baumannii MDR-TJ]
gi|416150487|ref|ZP_11603372.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
AB210]
gi|417571512|ref|ZP_12222369.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC189]
gi|417874790|ref|ZP_12519632.1| DNA polymerase IV [Acinetobacter baumannii ABNIH2]
gi|421205151|ref|ZP_15662251.1| dna polymerase iv [Acinetobacter baumannii AC12]
gi|421536653|ref|ZP_15982890.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AC30]
gi|421665373|ref|ZP_16105491.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC087]
gi|421670582|ref|ZP_16110574.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC099]
gi|421701851|ref|ZP_16141338.1| DNA polymerase IV [Acinetobacter baumannii ZWS1122]
gi|421705664|ref|ZP_16145086.1| DNA polymerase IV [Acinetobacter baumannii ZWS1219]
gi|424054052|ref|ZP_17791583.1| DNA polymerase IV [Acinetobacter baumannii Ab11111]
gi|425754620|ref|ZP_18872477.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-113]
gi|323516262|gb|ADX90643.1| DNA polymerase IV [Acinetobacter baumannii TCDC-AB0715]
gi|333363953|gb|EGK45967.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
AB210]
gi|342227896|gb|EGT92804.1| DNA polymerase IV [Acinetobacter baumannii ABNIH2]
gi|347591948|gb|AEP04669.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii MDR-ZJ06]
gi|385880079|gb|AFI97174.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acinetobacter baumannii MDR-TJ]
gi|395551960|gb|EJG17969.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC189]
gi|398325341|gb|EJN41519.1| dna polymerase iv [Acinetobacter baumannii AC12]
gi|404667538|gb|EKB35459.1| DNA polymerase IV [Acinetobacter baumannii Ab11111]
gi|407195442|gb|EKE66575.1| DNA polymerase IV [Acinetobacter baumannii ZWS1219]
gi|407195695|gb|EKE66822.1| DNA polymerase IV [Acinetobacter baumannii ZWS1122]
gi|409985414|gb|EKO41630.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AC30]
gi|410384422|gb|EKP36931.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC099]
gi|410390444|gb|EKP42833.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC087]
gi|425496514|gb|EKU62640.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-113]
Length = 351
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 148/353 (41%), Gaps = 74/353 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLRHLPVVISSHHP--RAVIAAASYPARQFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + +T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVASFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ L+ T+ +L+K L HF K LY A+GID+
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLELHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDNR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
PV A + I F LA Q H LA++V + LE LN R
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQPYWH---GLAEKVWQSLEKK-QLNAR 280
>gi|443895989|dbj|GAC73333.1| protein involved in establishing cohesion between sister chromatids
during DNA replication [Pseudozyma antarctica T-34]
Length = 846
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN 244
LA+ ++ +R VL + + SAGIA NK LAKL KP Q+I+ SV+ Y++
Sbjct: 396 LALGAELLNRVRQNVLDELNYTTSAGIACNKTLAKLCSSWRKPNGQTIMRPCSVANFYSS 455
Query: 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEP 304
L +K+R LGGKLG+ + +T+ +L + L ++Q+ F E+ A W+Y + RGID+
Sbjct: 456 LPFQKIRFLGGKLGNAMGLEWNSATVSDLWQVGLDEMQAKFGEE-ARWVYNVLRGIDYSE 514
Query: 305 VNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED 349
V R+ ++++ K + + ++ HW+ LA E+ RL +
Sbjct: 515 VRERVNNQTMLASKSV--RPAITKPEEAMHWLSILATELAIRLRE 557
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 24/143 (16%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+IA D+D Y Q E +L P+AV Q+ G+IAVNY AR GV+R
Sbjct: 115 RVIAHCDVDAAYAQFEASRLGLDATVVPIAVQQWQ-----GLIAVNYPARDAGVSRFESI 169
Query: 63 DEAKQHCPEIELCRVPSVR---GKAD-------------ISKYRNAGREVIAVLSEF--S 104
EA + CP++ L V + KAD + YR +++A+ +
Sbjct: 170 PEALKKCPDLHLVHVATYAHGSNKADYFPDPKPETHKVSLDPYRRESNKILAIFKKTCPR 229
Query: 105 NIVERASIDEAYIDLTDVVHERM 127
VE+ASIDE+Y DLT V + M
Sbjct: 230 GAVEKASIDESYFDLTVEVRKLM 252
>gi|380694159|ref|ZP_09859018.1| DNA damage-inducible protein [Bacteroides faecis MAJ27]
Length = 363
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 140/317 (44%), Gaps = 72/317 (22%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M+ R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MSQRKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP++ V G+ D+ Y++ R+ I E + + T
Sbjct: 59 ASQKAKKLCPQLIF-----VHGRMDV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 96 DIIE-----------------------PLSLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
+ + +++A I +EI+ + + SAG+++NK LAK+ KP +I P+ ++
Sbjct: 113 NKKGISLAVDIAKEIKLRIRQELNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPEQALD 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+ A L I+ +G + + L L+L K SL+ L +HF K S Y +RG
Sbjct: 173 FI-ARLPIESFWGVGPVTAKK-MHLLGIHNGLQLRKCSLEMLTAHF-GKVGSLYYECSRG 229
Query: 300 IDHEPVNARLVSKSIGC 316
ID PV A + KSIGC
Sbjct: 230 IDERPVEAVRIRKSIGC 246
>gi|445453449|ref|ZP_21445121.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-92]
gi|444753425|gb|ELW78075.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-92]
Length = 351
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 148/353 (41%), Gaps = 74/353 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLRHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + +T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVASFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ L+ T+ +L+K L HF K LY A+GID+
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLELHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDNR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
PV A + I F LA Q H LA++V + LE LN R
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQPYWH---GLAEKVWQSLEKK-QLNAR 280
>gi|167035208|ref|YP_001670439.1| DNA polymerase IV [Pseudomonas putida GB-1]
gi|189027677|sp|B0KTK6.1|DPO4_PSEPG RecName: Full=DNA polymerase IV; Short=Pol IV
gi|166861696|gb|ABZ00104.1| DNA-directed DNA polymerase [Pseudomonas putida GB-1]
Length = 354
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 127/312 (40%), Gaps = 81/312 (25%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I +D DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAV-------GGSPDHRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ + +++ ++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLLIV-------KPRFEAYREASREIHGIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q YS + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWYSGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
I E+IR V SAG+A NK LAK+ KP ++
Sbjct: 124 ----------------IAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
+ V A L + ++ H GK+ + + L T LEL ++S L F L+
Sbjct: 168 PAEVEAFVAALPVARL-HGVGKVTADKLTRLGIETCLELREWSRLALVREF-GSFGERLW 225
Query: 295 YIARGIDHEPVN 306
+ARGID V+
Sbjct: 226 GLARGIDERAVH 237
>gi|85816953|gb|EAQ38137.1| DNA polymerase IV [Dokdonia donghaensis MED134]
Length = 370
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 145/340 (42%), Gaps = 72/340 (21%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
+DMD FY VE NP L GK +AV A +YEAR GV M G A++
Sbjct: 12 VDMDAFYASVEQLDNPDLRGKAIAVGGGGERGVVS--AASYEARKYGVRSAMAGALARKL 69
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP++ K + +YR ++ +V EF+++VE S+DEAY+D+T+
Sbjct: 70 CPDLIFV-------KTNFERYREVSAQIRSVFHEFTDLVEPLSLDEAYLDVTE------N 116
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
+G +A+ +++ W+ Q
Sbjct: 117 KVGMPSATVIAS----------------------WIRQ---------------------- 132
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
+ KT + SAGI+ NK +AK+ ++KP Q +P V L IK
Sbjct: 133 ---------CIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEEVITFLEELDIK 183
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
K +G K +++ T ++L+ S + L +F K+ ++ Y I RGI H V
Sbjct: 184 KFYGIGKKTAEKMY-LHGIFTGMDLKLKSKEYLSDNF-GKSGAYYYDIVRGIQHSEVKPN 241
Query: 309 LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
+ KS+ + F + + + + ++ +A+EV RLE
Sbjct: 242 RIRKSLAAERTF--RENITSEIFMLEKLEHIAEEVERRLE 279
>gi|169797618|ref|YP_001715411.1| DNA polymerase IV [Acinetobacter baumannii AYE]
gi|184156526|ref|YP_001844865.1| DNA polymerase IV [Acinetobacter baumannii ACICU]
gi|215484969|ref|YP_002327210.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB307-0294]
gi|239502137|ref|ZP_04661447.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB900]
gi|260556426|ref|ZP_05828645.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|301510902|ref|ZP_07236139.1| DNA polymerase IV [Acinetobacter baumannii AB058]
gi|332851008|ref|ZP_08433143.1| DNA polymerase IV [Acinetobacter baumannii 6013150]
gi|332865620|ref|ZP_08436453.1| DNA polymerase IV [Acinetobacter baumannii 6013113]
gi|332875005|ref|ZP_08442852.1| DNA polymerase IV [Acinetobacter baumannii 6014059]
gi|384130174|ref|YP_005512786.1| DNA polymerase IV [Acinetobacter baumannii 1656-2]
gi|403673120|ref|ZP_10935433.1| DNA polymerase IV [Acinetobacter sp. NCTC 10304]
gi|417554988|ref|ZP_12206057.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-81]
gi|417563117|ref|ZP_12213996.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC137]
gi|417577028|ref|ZP_12227873.1| DNA polymerase IV [Acinetobacter baumannii Naval-17]
gi|417870856|ref|ZP_12515804.1| DNA polymerase IV [Acinetobacter baumannii ABNIH1]
gi|417880013|ref|ZP_12524558.1| DNA polymerase IV [Acinetobacter baumannii ABNIH3]
gi|417884379|ref|ZP_12528580.1| DNA polymerase IV [Acinetobacter baumannii ABNIH4]
gi|421201172|ref|ZP_15658331.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC109]
gi|421456702|ref|ZP_15906040.1| putative DNA polymerase IV [Acinetobacter baumannii IS-123]
gi|421623016|ref|ZP_16063906.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC074]
gi|421627446|ref|ZP_16068256.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC098]
gi|421629411|ref|ZP_16070144.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC180]
gi|421634758|ref|ZP_16075369.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-13]
gi|421644682|ref|ZP_16085159.1| putative DNA polymerase IV [Acinetobacter baumannii IS-235]
gi|421647102|ref|ZP_16087533.1| putative DNA polymerase IV [Acinetobacter baumannii IS-251]
gi|421649774|ref|ZP_16090157.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC0162]
gi|421658940|ref|ZP_16099167.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-83]
gi|421662434|ref|ZP_16102599.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC110]
gi|421673404|ref|ZP_16113344.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC065]
gi|421680541|ref|ZP_16120395.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC111]
gi|421687638|ref|ZP_16127358.1| putative DNA polymerase IV [Acinetobacter baumannii IS-143]
gi|421689691|ref|ZP_16129365.1| putative DNA polymerase IV [Acinetobacter baumannii IS-116]
gi|421695286|ref|ZP_16134895.1| putative DNA polymerase IV [Acinetobacter baumannii WC-692]
gi|421699297|ref|ZP_16138830.1| putative DNA polymerase IV [Acinetobacter baumannii IS-58]
gi|421791630|ref|ZP_16227802.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-2]
gi|421796731|ref|ZP_16232787.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-21]
gi|421802523|ref|ZP_16238472.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-694]
gi|421806537|ref|ZP_16242400.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC035]
gi|424061480|ref|ZP_17798969.1| DNA polymerase IV [Acinetobacter baumannii Ab33333]
gi|424064969|ref|ZP_17802453.1| DNA polymerase IV [Acinetobacter baumannii Ab44444]
gi|425749660|ref|ZP_18867631.1| putative DNA polymerase IV [Acinetobacter baumannii WC-348]
gi|445397472|ref|ZP_21429297.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-57]
gi|445462986|ref|ZP_21449183.1| DNA polymerase IV [Acinetobacter baumannii OIFC338]
gi|445480792|ref|ZP_21455703.1| DNA polymerase IV [Acinetobacter baumannii Naval-78]
gi|445487709|ref|ZP_21457924.1| putative DNA polymerase IV [Acinetobacter baumannii AA-014]
gi|169150545|emb|CAM88453.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AYE]
gi|183208120|gb|ACC55518.1| Nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
ACICU]
gi|193076069|gb|ABO10667.2| DNA polymerase IV [Acinetobacter baumannii ATCC 17978]
gi|213988136|gb|ACJ58435.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB307-0294]
gi|260410481|gb|EEX03780.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|322506394|gb|ADX01848.1| DNA polymerase IV [Acinetobacter baumannii 1656-2]
gi|332730291|gb|EGJ61615.1| DNA polymerase IV [Acinetobacter baumannii 6013150]
gi|332735209|gb|EGJ66287.1| DNA polymerase IV [Acinetobacter baumannii 6013113]
gi|332736815|gb|EGJ67795.1| DNA polymerase IV [Acinetobacter baumannii 6014059]
gi|342226754|gb|EGT91714.1| DNA polymerase IV [Acinetobacter baumannii ABNIH1]
gi|342226802|gb|EGT91760.1| DNA polymerase IV [Acinetobacter baumannii ABNIH3]
gi|342234417|gb|EGT99076.1| DNA polymerase IV [Acinetobacter baumannii ABNIH4]
gi|395525699|gb|EJG13788.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC137]
gi|395563204|gb|EJG24857.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC109]
gi|395570249|gb|EJG30911.1| DNA polymerase IV [Acinetobacter baumannii Naval-17]
gi|400210406|gb|EJO41375.1| putative DNA polymerase IV [Acinetobacter baumannii IS-123]
gi|400391405|gb|EJP58452.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-81]
gi|404564254|gb|EKA69436.1| putative DNA polymerase IV [Acinetobacter baumannii IS-143]
gi|404565597|gb|EKA70761.1| putative DNA polymerase IV [Acinetobacter baumannii IS-116]
gi|404566300|gb|EKA71456.1| putative DNA polymerase IV [Acinetobacter baumannii WC-692]
gi|404571691|gb|EKA76742.1| putative DNA polymerase IV [Acinetobacter baumannii IS-58]
gi|404666357|gb|EKB34304.1| DNA polymerase IV [Acinetobacter baumannii Ab33333]
gi|404673052|gb|EKB40856.1| DNA polymerase IV [Acinetobacter baumannii Ab44444]
gi|408504675|gb|EKK06416.1| putative DNA polymerase IV [Acinetobacter baumannii IS-235]
gi|408512515|gb|EKK14156.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC0162]
gi|408516896|gb|EKK18455.1| putative DNA polymerase IV [Acinetobacter baumannii IS-251]
gi|408693128|gb|EKL38740.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC098]
gi|408693899|gb|EKL39494.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC074]
gi|408701548|gb|EKL46975.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC180]
gi|408703781|gb|EKL49163.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-13]
gi|408709114|gb|EKL54373.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-83]
gi|408714774|gb|EKL59907.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC110]
gi|410386265|gb|EKP38738.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC065]
gi|410389456|gb|EKP41870.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC111]
gi|410398429|gb|EKP50648.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-21]
gi|410402559|gb|EKP54674.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-2]
gi|410414716|gb|EKP66512.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-694]
gi|410417717|gb|EKP69486.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC035]
gi|425488001|gb|EKU54342.1| putative DNA polymerase IV [Acinetobacter baumannii WC-348]
gi|444768127|gb|ELW92346.1| putative DNA polymerase IV [Acinetobacter baumannii AA-014]
gi|444771115|gb|ELW95248.1| DNA polymerase IV [Acinetobacter baumannii Naval-78]
gi|444780511|gb|ELX04458.1| DNA polymerase IV [Acinetobacter baumannii OIFC338]
gi|444784058|gb|ELX07889.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-57]
gi|452954105|gb|EME59509.1| DNA polymerase IV [Acinetobacter baumannii MSP4-16]
Length = 351
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 148/353 (41%), Gaps = 74/353 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLRHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + +T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVASFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ L+ T+ +L+K L HF K LY A+GID+
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLELHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDNR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
PV A + I F LA Q H LA++V + LE LN R
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQPYWH---GLAEKVWQSLEKK-QLNAR 280
>gi|226945758|ref|YP_002800831.1| DNA polymerase IV [Azotobacter vinelandii DJ]
gi|226720685|gb|ACO79856.1| DNA polymerase IV DinP [Azotobacter vinelandii DJ]
Length = 353
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 128/314 (40%), Gaps = 85/314 (27%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I +D DCFY +E + +P L G+PLAV GG G+IA NYEAR
Sbjct: 1 MSGRKIIHVDCDCFYAAIEMRDDPRLAGRPLAV-------GGAPDRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M +A + CPE+ + R Y+ RE+ +L ++S +VE S+DE
Sbjct: 54 GVHSAMPARQALKLCPELLIVR-------PRFEAYKVVSREIQRILRDYSELVEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++ H +S + T
Sbjct: 107 AYLDVSASPH-------------------------------------------FSGSATR 123
Query: 175 LMENTED--FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI 232
+ ++ +QEL I SAG+A NK LAK+ KP +
Sbjct: 124 IAQDVRRRVWQELRIT------------------VSAGVAPNKFLAKIASDWRKPDGLFV 165
Query: 233 LPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASW 292
+P + V A L + ++ H GK+ E + L T EL ++S L F
Sbjct: 166 IPPAEVEAFVAELPVSRL-HGVGKVTAERLARLGVRTCAELRQWSRLALMREF-GSFGER 223
Query: 293 LYYIARGIDHEPVN 306
L +ARGID PV
Sbjct: 224 LALLARGIDERPVT 237
>gi|213155590|ref|YP_002317635.1| DNA polymerase IV [Acinetobacter baumannii AB0057]
gi|301346037|ref|ZP_07226778.1| DNA polymerase IV [Acinetobacter baumannii AB056]
gi|301596200|ref|ZP_07241208.1| DNA polymerase IV [Acinetobacter baumannii AB059]
gi|417575406|ref|ZP_12226259.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC-5]
gi|421788645|ref|ZP_16224929.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-82]
gi|421799153|ref|ZP_16235155.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC1]
gi|213054750|gb|ACJ39652.1| DNA polymerase IV [Acinetobacter baumannii AB0057]
gi|400206139|gb|EJO37119.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC-5]
gi|410401585|gb|EKP53724.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-82]
gi|410410628|gb|EKP62527.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC1]
Length = 351
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 148/353 (41%), Gaps = 74/353 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLRHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAMY------- 124
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + +T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 125 -----------IREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVASFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ L+ T+ +L+K L HF K LY A+GID+
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLELHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDNR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
PV A + I F LA Q H LA++V + LE LN R
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQPYWH---GLAEKVWQSLEKK-QLNAR 280
>gi|253701103|ref|YP_003022292.1| DNA-directed DNA polymerase [Geobacter sp. M21]
gi|251775953|gb|ACT18534.1| DNA-directed DNA polymerase [Geobacter sp. M21]
Length = 409
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 129/302 (42%), Gaps = 70/302 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII IDM+ F+ VE + NP+L GKP+AV+ K I +YEAR GV M
Sbjct: 5 RIILHIDMNAFFASVEQQSNPALAGKPVAVI--GAAKRTIITTCSYEARAFGVKTGMNSW 62
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA+Q CP + + KY +++I+++ E++ VE SIDEA++D+T
Sbjct: 63 EARQKCPHLIFV-------VGNNRKYSYTSKQIISIMREYTPQVEVFSIDEAFLDVTG-- 113
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
SL + E
Sbjct: 114 ------------------------------------------------SLSLFGSAEKIA 125
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+L I ++IR + CS GIA NK+LAKL + KP +I+ V+ +
Sbjct: 126 DL-----IKQQIR----ERFGLTCSVGIAPNKLLAKLASDMQKPDGLTIIEPGKVAQVME 176
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L I+ + +G K+ + + T EL +F ++ L+ HF T L+++ G+D
Sbjct: 177 RLPIQALCGIGAKMQQHLAK-FGIKTCGELARFPVETLRKHF-GVTGERLHFMGLGVDDS 234
Query: 304 PV 305
PV
Sbjct: 235 PV 236
>gi|417548493|ref|ZP_12199574.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-18]
gi|417566604|ref|ZP_12217476.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC143]
gi|395552276|gb|EJG18284.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC143]
gi|400388792|gb|EJP51864.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-18]
Length = 351
Score = 101 bits (251), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 147/353 (41%), Gaps = 74/353 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLRHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + +T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVASFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L +KK+ + GK+ E ++ L+ T+ +L+K L HF K LY A+GID+
Sbjct: 174 GLPLKKIPGV-GKVTQEKLQQLELHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDNR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
PV A + I F LA Q H LA++V + LE LN R
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQPYWH---GLAEKVWQSLEKK-QLNAR 280
>gi|339488907|ref|YP_004703435.1| DNA polymerase IV [Pseudomonas putida S16]
gi|338839750|gb|AEJ14555.1| DNA polymerase IV [Pseudomonas putida S16]
Length = 354
Score = 101 bits (251), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 125/306 (40%), Gaps = 69/306 (22%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M+ R I +D DCFY +E + +P L G+P+AV +T + G I NYEAR GV M
Sbjct: 1 MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAVGG-STDRRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K YR A RE+ + +++ ++E S+DEAY+D++
Sbjct: 60 SSRHALKLCPDLLIV-------KPRFEAYREASREIHTIFRDYTELIEPLSLDEAYLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D Q YS + T
Sbjct: 113 D-------------------------------------------SQWYSGSATR------ 123
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
I E+IR V SAG+A NK LAK+ KP ++ V
Sbjct: 124 ----------IAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVITPGEVEA 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
A L + ++ H GK+ + + L T LEL ++S L F L+ +ARG+
Sbjct: 174 FVAALPVARL-HGVGKVTADKLARLGIETCLELREWSRLALVREF-GSFGERLWGLARGV 231
Query: 301 DHEPVN 306
D V+
Sbjct: 232 DERAVH 237
>gi|229583270|ref|YP_002841669.1| DNA polymerase IV [Sulfolobus islandicus Y.N.15.51]
gi|228013986|gb|ACP49747.1| DNA-directed DNA polymerase [Sulfolobus islandicus Y.N.15.51]
Length = 352
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 131/313 (41%), Gaps = 70/313 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMRG 62
II +D D FY QVE LNPSL GKP+ V ++ G + NYEAR G+ +
Sbjct: 2 IILFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGIKAGISI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ P +P + Y+ ++ +L E+S +E ASIDEAY+D++D
Sbjct: 62 VEAKKILP--SAVYLPMRK-----EVYQQVSNRIMKLLREYSEKIEIASIDEAYLDISDK 114
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V N +DA G+
Sbjct: 115 V--------------------------KNYQDAYNLGL---------------------- 126
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
EI+ +L K + + GI+ NKV AK+ + KP ++ V L
Sbjct: 127 -----------EIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLI 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L I + +G + E ++ L + +++ + +L+ E A +L+ +AR +
Sbjct: 176 VELDIADIPGIGD-ITAEKLKKLGVNKLVDTLRIEFDELKGIIGEAKAKYLFSLARDEYN 234
Query: 303 EPVNARLVSKSIG 315
EP+ AR V KSIG
Sbjct: 235 EPIRAR-VRKSIG 246
>gi|440720468|ref|ZP_20900886.1| DNA polymerase IV [Pseudomonas syringae BRIP34876]
gi|440726597|ref|ZP_20906849.1| DNA polymerase IV [Pseudomonas syringae BRIP34881]
gi|440365827|gb|ELQ02915.1| DNA polymerase IV [Pseudomonas syringae BRIP34881]
gi|440365993|gb|ELQ03080.1| DNA polymerase IV [Pseudomonas syringae BRIP34876]
Length = 353
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPDLAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D GH + S
Sbjct: 113 DA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FIASLPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 230 GIDDRPVQ 237
>gi|229578057|ref|YP_002836455.1| DNA polymerase IV [Sulfolobus islandicus Y.G.57.14]
gi|228008771|gb|ACP44533.1| DNA-directed DNA polymerase [Sulfolobus islandicus Y.G.57.14]
Length = 352
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 131/313 (41%), Gaps = 70/313 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMRG 62
II +D D FY QVE LNPSL GKP+ V ++ G + NYEAR G+ +
Sbjct: 2 IILFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGIKAGISI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ P +P + Y+ ++ +L E+S +E ASIDEAY+D++D
Sbjct: 62 VEAKKILP--NAVYLPMRK-----EVYQQVSNRIMKLLREYSEKIEIASIDEAYLDISDK 114
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V N +DA G+
Sbjct: 115 V--------------------------KNYQDAYNLGL---------------------- 126
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
EI+ +L K + + GI+ NKV AK+ + KP ++ V L
Sbjct: 127 -----------EIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLI 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L I + +G + E ++ L + +++ + +L+ E A +L+ +AR +
Sbjct: 176 VELDIADIPGIGD-ITAEKLKKLGVNKLVDTLRIEFDELKGIIGEAKAKYLFSLARDEYN 234
Query: 303 EPVNARLVSKSIG 315
EP+ AR V KSIG
Sbjct: 235 EPIRAR-VRKSIG 246
>gi|317495780|ref|ZP_07954143.1| impB/mucB/samB family protein [Gemella morbillorum M424]
gi|316913957|gb|EFV35440.1| impB/mucB/samB family protein [Gemella morbillorum M424]
Length = 403
Score = 100 bits (250), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 79/131 (60%), Gaps = 8/131 (6%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
S++IA IDM+CFY VE K +P L GKPLA+ + G I+ NYEAR KGV MR
Sbjct: 2 SKVIAHIDMNCFYASVEEKYDPELKGKPLAIAGEVKTRHGIIVTCNYEARGKGVKSTMRV 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+A++ CP I++ K D+ KY+ + + ++ +++ VE S+DEAYIDL+D
Sbjct: 62 GDARKLCPNIKIL-------KPDMVKYQEESKRIFDLVRQYTEKVEVISVDEAYIDLSD- 113
Query: 123 VHERMKSIGHI 133
E +K+I I
Sbjct: 114 FSEPVKAIATI 124
>gi|254283888|ref|ZP_04958856.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR51-B]
gi|219680091|gb|EED36440.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR51-B]
Length = 371
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 146/345 (42%), Gaps = 72/345 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE + NP L GKP+AV + + G + A +YEAR GV M
Sbjct: 10 RKIIHVDMDAFYASVEQRDNPDLRGKPIAV--GGSAQRGVVAAASYEARTFGVRSAMPSI 67
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AK+ C E+ V+ + D+ YR +++ A+ ++ +VE S+DEAY+D++
Sbjct: 68 TAKRKCSELLF-----VKPRFDV--YRTVSQQIQAIFRRYTALVEPLSLDEAYLDVS--- 117
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
ED + G S T+T+
Sbjct: 118 -----------------------------EDRERVG---------SATETA--------- 130
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
E IR + + SAG+++NK LAK+ +KP ++ + A
Sbjct: 131 ---------ERIRREIFEEVGLTASAGVSYNKFLAKVASDQNKPNGLCVIRPHEGAAFAA 181
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L ++ +G K + L + +L SL LQ HF K+A +LY +RG D
Sbjct: 182 GLPARRFFGVGPKTAQRMA-ALGIHSGADLRAQSLDFLQQHF-GKSALYLYRASRGEDFR 239
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
V KSIG + + T L Q++ + ++ D V R+E
Sbjct: 240 EVRPNRERKSIGGERTY--STDLKHSQELRAALVDIIDLVWRRIE 282
>gi|424066589|ref|ZP_17804053.1| DNA polymerase IV [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424071243|ref|ZP_17808669.1| DNA polymerase IV [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407999176|gb|EKG39563.1| DNA polymerase IV [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|408002188|gb|EKG42451.1| DNA polymerase IV [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 361
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 9 MTQRKIIHIDCDCFYAAIEMRDEPDLAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 67
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 68 SSRHALKLCPDLTIV-------KPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 120
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D GH + S
Sbjct: 121 DA--------GHFSGS-------------------------------------------- 128
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 129 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 181
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 182 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGER----LWSLAH 237
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 238 GIDDRPVQ 245
>gi|169632191|ref|YP_001705927.1| DNA polymerase IV [Acinetobacter baumannii SDF]
gi|169150983|emb|CAO99608.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii]
Length = 363
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 150/353 (42%), Gaps = 74/353 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLRHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + +T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVASFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ L+ T+ +L+K L HF K LY A+GID+
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLELHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDNR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
PV A + I F LA Q S+W LA++V + LE LN R
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQ--SYW-HGLAEKVWQSLEKK-QLNAR 280
>gi|257487023|ref|ZP_05641064.1| DNA polymerase IV [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|422598682|ref|ZP_16672939.1| DNA polymerase IV [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|330988956|gb|EGH87059.1| DNA polymerase IV [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 353
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPELAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMEAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D GH + S
Sbjct: 113 DA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 230 GIDDRPVQ 237
>gi|422599679|ref|ZP_16673814.1| DNA polymerase IV, partial [Pseudomonas syringae pv. mori str.
301020]
gi|330892612|gb|EGH25273.1| DNA polymerase IV [Pseudomonas syringae pv. mori str. 301020]
Length = 330
Score = 100 bits (249), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 9 MTQRKIIHIDCDCFYAAIEMRDEPELAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 67
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 68 SSRHALKLCPDLTIV-------KPRMEAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 120
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D GH + S
Sbjct: 121 DA--------GHFSGS-------------------------------------------- 128
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 129 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 181
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 182 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRGRSKLALVREFGSFGER----LWSLAH 237
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 238 GIDDRPVQ 245
>gi|289628619|ref|ZP_06461573.1| DNA polymerase IV [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289651505|ref|ZP_06482848.1| DNA polymerase IV [Pseudomonas syringae pv. aesculi str. 2250]
gi|422583771|ref|ZP_16658891.1| DNA polymerase IV [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330868598|gb|EGH03307.1| DNA polymerase IV [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 353
Score = 100 bits (249), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPELAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMEAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D GH + S
Sbjct: 113 DA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRGRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 230 GIDERPVQ 237
>gi|227829287|ref|YP_002831066.1| DNA polymerase IV [Sulfolobus islandicus L.S.2.15]
gi|284996644|ref|YP_003418411.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|227455734|gb|ACP34421.1| DNA-directed DNA polymerase [Sulfolobus islandicus L.S.2.15]
gi|284444539|gb|ADB86041.1| hypothetical protein LD85_0242 [Sulfolobus islandicus L.D.8.5]
Length = 352
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 131/313 (41%), Gaps = 70/313 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMRG 62
II +D D FY QVE LNPSL GKP+ V ++ G + NYEAR G+ +
Sbjct: 2 IILFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGIKAGIPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ P +P + Y+ ++ +L E+S +E ASIDEAY+D++D
Sbjct: 62 VEAKKILP--NAVYLPMRK-----EVYQQVSNRIMKLLREYSEKIEIASIDEAYLDISDK 114
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V N +DA G+
Sbjct: 115 V--------------------------KNYQDAYNLGL---------------------- 126
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
EI+ +L K + + GI+ NKV AK+ + KP ++ V L
Sbjct: 127 -----------EIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLI 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L I + +G + E ++ L + +++ + +L+ E A +L+ +AR +
Sbjct: 176 VELDIADIPGIGD-ITAEKLKKLGVNKLVDTLRIEFDELKGIIGEAKAKYLFSLARDEYN 234
Query: 303 EPVNARLVSKSIG 315
EP+ AR V KSIG
Sbjct: 235 EPIRAR-VRKSIG 246
>gi|285019488|ref|YP_003377199.1| DNA polymerase iv protein [Xanthomonas albilineans GPE PC73]
gi|283474706|emb|CBA17205.1| probable dna polymerase iv protein [Xanthomonas albilineans GPE
PC73]
Length = 353
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 156/375 (41%), Gaps = 85/375 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKG--GGIIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +P+L GKP+ V W+G + A +YEAR GV M
Sbjct: 2 RKIIHVDMDAFYASVEQRDDPALRGKPVVV----AWRGMRSVVCAASYEARVFGVRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D ++Y+ R+V A+ ++++E S+DEAY+D+T
Sbjct: 58 ALRAERLCPDAIF--VPP-----DFARYKAVSRQVRAIFQRHTDLIEPLSLDEAYLDVT- 109
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+ G AA++++ T
Sbjct: 110 -----VPKGGPAAATEIAQT---------------------------------------- 124
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
IRA + +T SAGIA NK LAK+ KP Q ++ V
Sbjct: 125 -------------IRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQCVIHPHRVEAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + KV + GK+ + L T+ +L S +L++ F LY ARGID
Sbjct: 172 LTPLPVNKVPGV-GKVMQSKLAALGIVTVGDLRDCSEAELEARFGSFGLR-LYQRARGID 229
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVC------ERLEDDLTLNK 355
PV + +SI F L + + I+ LA++ +R+ + L
Sbjct: 230 ERPVESDQPVQSISSEDTFAEDLAL---EALEPAIRRLAEKTWDATRRTDRVARTVVLKL 286
Query: 356 RRAQ--LLTVSFTQE 368
+ AQ +LT SFT E
Sbjct: 287 KTAQFRILTRSFTPE 301
>gi|389776484|ref|ZP_10193973.1| DNA polymerase IV [Rhodanobacter spathiphylli B39]
gi|388436634|gb|EIL93490.1| DNA polymerase IV [Rhodanobacter spathiphylli B39]
Length = 357
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 129/308 (41%), Gaps = 80/308 (25%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+AV W+G + A +YEAR GV M
Sbjct: 5 RKILHVDMDAFYASVEQRDDPSLRGKPVAV----AWRGARSVVCAASYEARVFGVRSAMP 60
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP +L VP D +Y+ R++ + + ++++E S+DEAY+D+T
Sbjct: 61 AVSAERLCP--QLVFVPP-----DFVRYKAVSRQIREIFARHTDLIEPLSLDEAYLDVT- 112
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+T T L T
Sbjct: 113 ------------------------------------------------ETKTGLPSATAT 124
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+ AI I EE TQ SAG+A NK LAK+ KP ++ V
Sbjct: 125 AE--AIRAAIREE--------TQLTASAGVAPNKFLAKIASDFRKPDGLFVVRPHQVEAF 174
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASW---LYYIAR 298
A L + ++ + GK+ + + LQ T+ +L +L +L+ F W L+ ++
Sbjct: 175 LAPLKVGRLPGV-GKVMEAKLAALQIVTVADLRALALAELEQRF----GRWGRRLHELSL 229
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 230 GIDEHPVQ 237
>gi|385772263|ref|YP_005644829.1| DNA-directed DNA polymerase [Sulfolobus islandicus HVE10/4]
gi|323476377|gb|ADX81615.1| DNA-directed DNA polymerase [Sulfolobus islandicus HVE10/4]
Length = 352
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 131/313 (41%), Gaps = 70/313 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMRG 62
I+ +D D FY QVE LNPSL GKP+ V ++ G I NYEAR G+ +
Sbjct: 2 IVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAIATANYEARKFGIKAGIPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ P +P + Y+ ++ +L E+S +E ASIDEAY+D++D
Sbjct: 62 VEAKKILP--NAVYLPMRK-----EVYQQVSNRIMKLLREYSEKIEIASIDEAYLDISDK 114
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V N +DA G+
Sbjct: 115 V--------------------------KNYQDAYNLGL---------------------- 126
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
EI+ +L K + + GI+ NKV AK+ + KP ++ V L
Sbjct: 127 -----------EIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLI 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L I + +G + E ++ L + +++ + +L+ E A +L+ +AR +
Sbjct: 176 GELDIADIPGIGD-ITAEKLKKLGVNKLVDTLRIEFDELKRIIGEAKAKYLFSLARDEYN 234
Query: 303 EPVNARLVSKSIG 315
EP+ AR V KSIG
Sbjct: 235 EPIRAR-VRKSIG 246
>gi|227826646|ref|YP_002828425.1| DNA polymerase IV [Sulfolobus islandicus M.14.25]
gi|227458441|gb|ACP37127.1| DNA-directed DNA polymerase [Sulfolobus islandicus M.14.25]
Length = 352
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 131/313 (41%), Gaps = 70/313 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMRG 62
II +D D FY QVE LNPSL GKP+ V ++ G + NYEAR G+ +
Sbjct: 2 IILFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGIKAGIPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ P +P + Y+ ++ +L E+S +E ASIDEAY+D++D
Sbjct: 62 VEAKKILP--NAVYLPMRK-----EVYQQVSNRIMKLLREYSEKIEIASIDEAYLDISDK 114
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V N +DA G+
Sbjct: 115 V--------------------------KNYQDAYNLGL---------------------- 126
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
EI+ +L K + + GI+ NKV AK+ + KP ++ V L
Sbjct: 127 -----------EIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDKEVKRLI 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L I + +G + E ++ L + +++ + +L+ E A +L+ +AR +
Sbjct: 176 GELDIADIPGIGD-ITAEKLKKLGVNKLVDTLRIEFDELKRIIGEAKAKYLFSLARDEYN 234
Query: 303 EPVNARLVSKSIG 315
EP+ AR V KSIG
Sbjct: 235 EPIRAR-VRKSIG 246
>gi|229583810|ref|YP_002842311.1| DNA polymerase IV [Sulfolobus islandicus M.16.27]
gi|238618732|ref|YP_002913557.1| DNA polymerase IV [Sulfolobus islandicus M.16.4]
gi|228018859|gb|ACP54266.1| DNA-directed DNA polymerase [Sulfolobus islandicus M.16.27]
gi|238379801|gb|ACR40889.1| DNA-directed DNA polymerase [Sulfolobus islandicus M.16.4]
Length = 352
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 131/313 (41%), Gaps = 70/313 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMRG 62
II +D D FY QVE LNPSL GKP+ V ++ G + NYEAR G+ +
Sbjct: 2 IILFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGIKAGIPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ P +P + Y+ ++ +L E+S +E ASIDEAY+D++D
Sbjct: 62 VEAKKILP--NAVYLPMRK-----EVYQQVSNRIMKLLREYSEKIEIASIDEAYLDISDK 114
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V N +DA G+
Sbjct: 115 V--------------------------KNYQDAYNLGL---------------------- 126
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
EI+ +L K + + GI+ NKV AK+ + KP ++ V L
Sbjct: 127 -----------EIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLI 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L I + +G + E ++ L + +++ + +L+ E A +L+ +AR +
Sbjct: 176 GELDIADIPGIGD-ITAEKLKKLGVNKLVDTLRIEFDELKRIIGEAKAKYLFSLARDEYN 234
Query: 303 EPVNARLVSKSIG 315
EP+ AR V KSIG
Sbjct: 235 EPIRAR-VRKSIG 246
>gi|71733882|ref|YP_275925.1| DNA polymerase IV [Pseudomonas syringae pv. phaseolicola 1448A]
gi|416018015|ref|ZP_11565016.1| DNA polymerase IV [Pseudomonas syringae pv. glycinea str. B076]
gi|416025780|ref|ZP_11569428.1| DNA polymerase IV [Pseudomonas syringae pv. glycinea str. race 4]
gi|123635454|sp|Q48FB2.1|DPO4_PSE14 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|71554435|gb|AAZ33646.1| DNA polymerase IV [Pseudomonas syringae pv. phaseolicola 1448A]
gi|298157279|gb|EFH98363.1| DNA polymerase IV [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320323065|gb|EFW79154.1| DNA polymerase IV [Pseudomonas syringae pv. glycinea str. B076]
gi|320329663|gb|EFW85652.1| DNA polymerase IV [Pseudomonas syringae pv. glycinea str. race 4]
Length = 353
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPELAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMEAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D GH + S
Sbjct: 113 DA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRGRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 230 GIDDRPVQ 237
>gi|388543762|ref|ZP_10147052.1| DNA polymerase IV [Pseudomonas sp. M47T1]
gi|388278319|gb|EIK97891.1| DNA polymerase IV [Pseudomonas sp. M47T1]
Length = 355
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 129/312 (41%), Gaps = 81/312 (25%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I +D DCFY +E + + +L GKP+AV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHVDCDCFYAAIEMRDDSTLAGKPMAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + Y+ A RE+ + E+++++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLTIV-------KPRMDAYKEASREIHGIFREYTDLIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D+++ H +S + T
Sbjct: 107 AYLDVSECPH-------------------------------------------FSGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
+ E+ IR V + SAG+A NK LAK+ KP ++
Sbjct: 124 IAED----------------IRRKVSRRLHITVSAGVAPNKFLAKIASDWRKPNGLFVVT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
V A L + K+ H GK+ + + L S LEL +S L F L+
Sbjct: 168 PPQVEEFVAALPVNKL-HGVGKVTADKLARLGISNCLELRDWSKLALVREFGS-FGERLW 225
Query: 295 YIARGIDHEPVN 306
+ARGID PV+
Sbjct: 226 SLARGIDERPVH 237
>gi|431804007|ref|YP_007230910.1| DNA polymerase IV [Pseudomonas putida HB3267]
gi|430794772|gb|AGA74967.1| DNA polymerase IV [Pseudomonas putida HB3267]
Length = 354
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 126/312 (40%), Gaps = 81/312 (25%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I +D DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ + +++ ++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLLIV-------KPRFEAYREASREIHTIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q YS + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWYSGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
I E+IR V SAG+A NK LAK+ KP ++
Sbjct: 124 ----------------IAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
V A L + ++ H GK+ + + L T LEL ++S L F L+
Sbjct: 168 PGEVEAFVAALPVARL-HGVGKVTADKLARLGIETCLELREWSRLALVREF-GSFGERLW 225
Query: 295 YIARGIDHEPVN 306
+ARG+D V+
Sbjct: 226 GLARGVDERAVH 237
>gi|74418664|gb|ABA03145.1| Dpo4 [Sulfolobus tengchongensis]
Length = 352
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 136/314 (43%), Gaps = 72/314 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYN--TWKGGGIIAVNYEARHKGVTRHMRG 62
II +D D FY QVE LNPSL GKP+ V ++ T G + NYEAR GV M
Sbjct: 2 IILFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRTENSGAVATANYEARKLGVKAGMPI 61
Query: 63 DEAKQHCPE-IELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ P+ I L V Y+ ++ +L ++S +E ASIDEAY+D++D
Sbjct: 62 VKAKEILPDAIYLPMRKEV--------YQQVSNRIMNILRKYSRKIEIASIDEAYLDISD 113
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
V NN DA K G+
Sbjct: 114 KV--------------------------NNYTDAYKIGL--------------------- 126
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+I+ + K + + GI+ NKV AK+ + KP ++ + V L
Sbjct: 127 ------------QIKNEIYEKEKITVTVGISKNKVFAKIAAEMAKPNGIKVIDDNEVKKL 174
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
+ I ++ + G++ + +++L + ++++ F +++ E A++L+ +AR
Sbjct: 175 IREIDIGEIPGV-GEITTQKLKSLGINKLIDILNFDFMKIKKIVGEAKANYLFSLARDEY 233
Query: 302 HEPVNARLVSKSIG 315
PV R V KSIG
Sbjct: 234 FGPVKER-VRKSIG 246
>gi|418032444|ref|ZP_12670927.1| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. SC-8]
gi|351471307|gb|EHA31428.1| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. SC-8]
Length = 428
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR +GV M
Sbjct: 19 SRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 78
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+HCP EL +P + +YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 79 WQAKRHCP--ELIVLP-----PNFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 130
>gi|430759148|ref|YP_007209072.1| DNA polymerase IV 1 [Bacillus subtilis subsp. subtilis str. BSP1]
gi|430023668|gb|AGA24274.1| DNA polymerase IV 1 [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 414
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 SRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+HCP EL +P + +YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 65 WQAKRHCP--ELIVLP-----PNFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>gi|1303959|dbj|BAA12614.1| YqjH [Bacillus subtilis]
Length = 414
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 SRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+HCP EL +P + +YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 65 WQAKRHCP--ELIVLP-----PNFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>gi|428279867|ref|YP_005561602.1| DNA polymerase IV [Bacillus subtilis subsp. natto BEST195]
gi|291484824|dbj|BAI85899.1| DNA polymerase IV [Bacillus subtilis subsp. natto BEST195]
Length = 414
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 SRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+HCP EL +P + +YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 65 WQAKRHCP--ELIVLPP-----NFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>gi|221310306|ref|ZP_03592153.1| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. 168]
gi|221314630|ref|ZP_03596435.1| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221319553|ref|ZP_03600847.1| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. JH642]
gi|221323829|ref|ZP_03605123.1| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. SMY]
gi|255767518|ref|NP_390268.2| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. 168]
gi|321311867|ref|YP_004204154.1| DNA polymerase IV [Bacillus subtilis BSn5]
gi|402776649|ref|YP_006630593.1| DNA-damage lesion bypass DNA polymerase [Bacillus subtilis QB928]
gi|452915520|ref|ZP_21964146.1| impB/mucB/samB family protein [Bacillus subtilis MB73/2]
gi|251757260|sp|P54545.2|DPO41_BACSU RecName: Full=DNA polymerase IV 1; Short=Pol IV 1
gi|225185146|emb|CAB14319.2| DNA-damage lesion bypass DNA polymerase [Bacillus subtilis subsp.
subtilis str. 168]
gi|320018141|gb|ADV93127.1| DNA polymerase IV [Bacillus subtilis BSn5]
gi|402481829|gb|AFQ58338.1| DNA-damage lesion bypass DNA polymerase [Bacillus subtilis QB928]
gi|407959632|dbj|BAM52872.1| DNA polymerase IV [Bacillus subtilis BEST7613]
gi|407965207|dbj|BAM58446.1| DNA polymerase IV [Bacillus subtilis BEST7003]
gi|452115868|gb|EME06264.1| impB/mucB/samB family protein [Bacillus subtilis MB73/2]
Length = 414
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 SRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+HCP EL +P + +YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 65 WQAKRHCP--ELIVLP-----PNFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>gi|308048622|ref|YP_003912188.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799]
gi|307630812|gb|ADN75114.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799]
Length = 356
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 135/321 (42%), Gaps = 85/321 (26%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHKGV 56
R I +DMDCF+ VE + NP G+PLAV GG G+IA NYEAR GV
Sbjct: 7 GRKIIHVDMDCFFAAVEMRDNPEYRGRPLAV-------GGAADSRGVIATCNYEARQFGV 59
Query: 57 TRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAY 116
M EAK+ CPE+ L VRG+ + K AV + I R Y
Sbjct: 60 RSAMPSSEAKRRCPELLL-----VRGRMAVYK---------AVSEQIRAIFAR------Y 99
Query: 117 IDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSL 175
DL + P + DE Y D TD +
Sbjct: 100 TDLIE--------------------------PLSLDE-------------AYLDVTDCPV 120
Query: 176 MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQ 235
+ + A +I E IRA +L++T SAGIA NK LAK+ +KP Q ++P
Sbjct: 121 CQGS--------ATLIAERIRAEILAETGLTASAGIAPNKFLAKIASDENKPNGQFVIPP 172
Query: 236 SSVSMLYANLSIKKVRHLGGKLGDEVV-ETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
+ A L ++K+ +G K + + LQ ++ + +QL S F K L+
Sbjct: 173 GKTAEFAATLPLRKIPGVGPKTAERLASHGLQVGA--DVLTCTPEQLASWF-GKFGPVLH 229
Query: 295 YIARGIDHEPVNARLVSKSIG 315
A+GID PV KS+G
Sbjct: 230 QRAQGIDPRPVQTHRERKSVG 250
>gi|422608608|ref|ZP_16680584.1| DNA polymerase IV [Pseudomonas syringae pv. mori str. 301020]
gi|330892226|gb|EGH24887.1| DNA polymerase IV [Pseudomonas syringae pv. mori str. 301020]
Length = 353
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPELAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMEAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D GH + S
Sbjct: 113 DA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRGRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 230 GIDDRPVQ 237
>gi|325274561|ref|ZP_08140619.1| DNA polymerase IV [Pseudomonas sp. TJI-51]
gi|324100288|gb|EGB98076.1| DNA polymerase IV [Pseudomonas sp. TJI-51]
Length = 354
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 126/312 (40%), Gaps = 81/312 (25%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I +D DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAV-------GGSAERRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ A+ +++ ++E S+DE
Sbjct: 54 GVRSAMASRHALKLCPDLLIV-------KPRFEAYREASREIHAIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q YS + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWYSGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
I E+IR V SAG+A NK LAK+ KP ++
Sbjct: 124 ----------------IAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
V A L + ++ H GK+ + + L T L+L +S L F L+
Sbjct: 168 PDEVEAFVAALPVARL-HGVGKVTADKLTRLGIETCLQLRDWSRLALVREF-GSFGERLW 225
Query: 295 YIARGIDHEPVN 306
+ARGID V+
Sbjct: 226 GLARGIDERAVH 237
>gi|189461486|ref|ZP_03010271.1| hypothetical protein BACCOP_02145 [Bacteroides coprocola DSM 17136]
gi|189431820|gb|EDV00805.1| ImpB/MucB/SamB family protein [Bacteroides coprocola DSM 17136]
Length = 374
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 120/428 (28%), Positives = 173/428 (40%), Gaps = 97/428 (22%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
TSR I IDMD FY VE + NP L GKP+AV ++ K G + A +YEAR GV M
Sbjct: 11 TSRKIIHIDMDAFYASVEQRDNPDLKGKPVAV--GHSEKRGVVAAASYEARKYGVRSAMS 68
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+A + CPE+ V G+ D+ Y++ A I E + + TD
Sbjct: 69 SVKALKICPELIF-----VEGRMDV--YKSVS----------------AQIHEIFHEYTD 105
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
++ P + DE + ++ TE+
Sbjct: 106 IIE-----------------------PISLDE--------------------AFLDVTEN 122
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+++ +A I EI+ + + SAGI++NK LAK+ L KP +
Sbjct: 123 KKDIKLAVDIAREIKIRIRKELNLVASAGISYNKFLAKVASDLRKPDGLCTIHPDQAEEF 182
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
A L I+ +G + + TL L SL+ L F K Y ARGID
Sbjct: 183 IAGLPIEAFWGVGPVTAKK-MHTLGIYNGSTLRNCSLEMLTRQF-GKMGQVYYDFARGID 240
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLL 361
+ PV A + KSIGC L S I EL CE L + L + L
Sbjct: 241 NRPVEAIRIRKSIGCEHTLEKDISLK-----SSVIIELYHVACE-LAERLKAKDFQGSTL 294
Query: 362 TVS-----FTQETDGKVNSCSRSIALAS--YKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
T+ FTQ T RSI++ + LQDI+ +S Q++ + + P+
Sbjct: 295 TLKVKFHDFTQIT--------RSISVNKQLHTLQDILPLSKQLLAEVDYE------QHPI 340
Query: 415 LFLGLSAS 422
LGLS S
Sbjct: 341 RLLGLSVS 348
>gi|386758979|ref|YP_006232195.1| DNA polymerase IV [Bacillus sp. JS]
gi|384932261|gb|AFI28939.1| DNA polymerase IV [Bacillus sp. JS]
Length = 414
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 SRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+HCP EL +P + +YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 65 WQAKRHCP--ELIVLP-----PNFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>gi|445429972|ref|ZP_21438363.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC021]
gi|444761010|gb|ELW85437.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC021]
Length = 351
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 147/353 (41%), Gaps = 74/353 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRLTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVANFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ L+ T+ +L+K L HF K LY A+GID+
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLELHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDNR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
PV A + I F LA Q H LA++V + LE LN R
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQPYWH---GLAEKVWQSLEKK-QLNAR 280
>gi|260551121|ref|ZP_05825325.1| nucleotidyltransferase/DNA polymerase [Acinetobacter sp. RUH2624]
gi|424057302|ref|ZP_17794819.1| DNA polymerase IV [Acinetobacter nosocomialis Ab22222]
gi|260405888|gb|EEW99376.1| nucleotidyltransferase/DNA polymerase [Acinetobacter sp. RUH2624]
gi|407440835|gb|EKF47352.1| DNA polymerase IV [Acinetobacter nosocomialis Ab22222]
Length = 351
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 146/353 (41%), Gaps = 74/353 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMT 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP + + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPHVVII-------EPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + +T SAG+A NK LAK+ +KP ++ S V
Sbjct: 124 ----------HIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVGSFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ L+ T+ +L+K L HF K LY A+GID+
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLELHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDNR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
PV A + I F LA Q H LA++V + LE LN R
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQPYWH---GLAEKVWQSLEKK-QLNAR 280
>gi|402831592|ref|ZP_10880272.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
gi|402281665|gb|EJU30292.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
Length = 366
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 151/367 (41%), Gaps = 73/367 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ VE +P L GK +AV G + A +YEAR GV M G
Sbjct: 3 RKIIHIDMDAFFASVEQHDDPWLKGKAIAVG--GEGARGVVAAASYEARRYGVRSAMAGT 60
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A+Q CP++ K +YR ++ + E+ TD+V
Sbjct: 61 TARQLCPQLIFV-------KPRFERYREISMQIRTIFYEY----------------TDLV 97
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE Y D T+ M+
Sbjct: 98 E-----------------------PLSLDE-------------AYLDVTTNKMD------ 115
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+ A +I ++IRA + +T SAGI+ NK +AK+ +KP Q +P V A
Sbjct: 116 -MPSATLIAQQIRAKIFEQTGLTASAGISINKFIAKIASDYNKPNGQKTVPPEEVLDFLA 174
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L IKK + GK+ + + T +L +L++LQ +F + Y IARGI
Sbjct: 175 QLDIKKFYGI-GKVTAQKMYQKGIFTGADLRAKTLEELQEYF-GNNGEYFYQIARGIHLS 232
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
PV + KSIG F +T +++ + +++L +EV +RL L K L
Sbjct: 233 PVQPFRLVKSIGVEHTF--ETNISSEIFMEEPLKKLCEEVAQRLAKKQLLAKTVTLKLKY 290
Query: 364 S-FTQET 369
S F Q+T
Sbjct: 291 SDFKQQT 297
>gi|421656075|ref|ZP_16096386.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii Naval-72]
gi|408506381|gb|EKK08092.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii Naval-72]
Length = 351
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 147/353 (41%), Gaps = 74/353 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHP--RAVIAAASYPARKFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++ + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPQVVII-------EPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVASFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ L+ T+ +L+K L HF K LY A+GID+
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLELHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDNR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
PV A + I F LA Q H LA++V + LE LN R
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQPYWH---GLAEKVWQSLEKK-QLNAR 280
>gi|66044645|ref|YP_234486.1| DNA polymerase IV [Pseudomonas syringae pv. syringae B728a]
gi|422671164|ref|ZP_16730530.1| DNA polymerase IV [Pseudomonas syringae pv. aceris str. M302273]
gi|75502962|sp|Q4ZWM4.1|DPO4_PSEU2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|63255352|gb|AAY36448.1| DNA-directed DNA polymerase [Pseudomonas syringae pv. syringae
B728a]
gi|330968904|gb|EGH68970.1| DNA polymerase IV [Pseudomonas syringae pv. aceris str. M302273]
Length = 354
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 128/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPDLAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+ GH + S
Sbjct: 113 EA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEE 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 230 GIDDRPVQ 237
>gi|340377599|ref|XP_003387317.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 723
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 160/367 (43%), Gaps = 66/367 (17%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHMRGD 63
II +DMD FY VE + +PSL P+AV G +++ NY AR GV M G
Sbjct: 92 IIVHVDMDAFYAAVEMRDDPSLLNVPMAV------GGQSMLSTSNYLARRYGVRAAMPGF 145
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AK+ CP++ + K+ SKY+ + V +LS + + +DEAY+D+T+ V
Sbjct: 146 IAKKLCPQLVIV-------KSHFSKYQEVSQTVREILSNYDPLFSSVGLDEAYLDITEYV 198
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDN--NDEDARKAGVMEW---LGQV----YSDTDTS 174
E M+ + N FG + N E + + V + L Q+ +TD
Sbjct: 199 TELMRGKEEQVPVEEENRVTQSFGDSSVENAESLKHSLVHQTDTKLIQIDPESSQETDAK 258
Query: 175 LME---------------------NTEDFQEL----------------AIAGVIVEEIRA 197
L++ N D ++ A +V EIR
Sbjct: 259 LLQIDDPESYSTDMKSQHGSNESLNDTDSHQIDDLICDSDQCLPNSYWECAEKVVSEIRE 318
Query: 198 AVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML--YANLSIKKVRHLGG 255
+ TQ SAGIA NK+LAK+ ++KP Q ++P S +L L I+KV + G
Sbjct: 319 RIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKILEFIRKLPIRKVSGI-G 377
Query: 256 KLGDEVVETLQCSTMLEL-EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSI 314
K+ ++++ L T ++ +K L +L F + + + I GI V++ KSI
Sbjct: 378 KVTEKMLNALGIVTGADIYDKRGLLRLM--FSKCSYDYFMNICLGIGSCTVHSEWERKSI 435
Query: 315 GCCKRFP 321
+ FP
Sbjct: 436 STERTFP 442
>gi|385774977|ref|YP_005647545.1| DNA-directed DNA polymerase [Sulfolobus islandicus REY15A]
gi|323473725|gb|ADX84331.1| DNA-directed DNA polymerase [Sulfolobus islandicus REY15A]
Length = 352
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 131/313 (41%), Gaps = 70/313 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMRG 62
I+ +D D FY QVE LNPSL GKP+ V ++ G + NYEAR G+ +
Sbjct: 2 IVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGIKAGIPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ P +P + Y+ ++ +L E+S +E ASIDEAY+D++D
Sbjct: 62 VEAKKILP--NAVYLPMRK-----EVYQQVSNRIMKLLREYSEKIEIASIDEAYLDISDK 114
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V N +DA G+
Sbjct: 115 V--------------------------KNYQDAYNLGL---------------------- 126
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
EI+ +L K + + GI+ NKV AK+ + KP ++ V L
Sbjct: 127 -----------EIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLI 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L I + +G + E ++ L + +++ + +L+ E A +L+ +AR +
Sbjct: 176 GELDIADIPGIGD-ITAEKLKKLGVNKLVDTLRIEFDELKRIIGEAKAKYLFSLARDEYN 234
Query: 303 EPVNARLVSKSIG 315
EP+ AR V KSIG
Sbjct: 235 EPIRAR-VRKSIG 246
>gi|329768909|ref|ZP_08260336.1| hypothetical protein HMPREF0433_00100 [Gemella sanguinis M325]
gi|328836626|gb|EGF86284.1| hypothetical protein HMPREF0433_00100 [Gemella sanguinis M325]
Length = 403
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 76/131 (58%), Gaps = 8/131 (6%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR+IA IDM+CFY VE K NP L GKPLA+ + G I+ NYEAR G+ MR
Sbjct: 2 SRVIAHIDMNCFYASVEEKYNPELRGKPLAIAGTVKTRHGIIVTSNYEARKLGIKTTMRV 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+A++ CP I+ + D+ KY+ + + ++ E++ VE S+DEAYIDL++
Sbjct: 62 GDARKICPTIKFLQ-------PDMEKYQRESKLIFDLIREYTTKVEVVSVDEAYIDLSE- 113
Query: 123 VHERMKSIGHI 133
E +K I I
Sbjct: 114 FEEPIKVIATI 124
>gi|149726533|ref|XP_001504725.1| PREDICTED: DNA polymerase kappa [Equus caballus]
Length = 860
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 144/319 (45%), Gaps = 44/319 (13%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
I IDMD FY VE + NP L KP+AV + + NY AR GV M G A
Sbjct: 103 IVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 157
Query: 66 KQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 125
K+ CP++ + VP + KYR REV +L+++ S+DEAY+++T + E
Sbjct: 158 KRLCPQLLI--VP-----PNFDKYRAVSREVKEILADYDPNFLAMSLDEAYLNITKHLQE 210
Query: 126 RMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQV----YSDTDTSL------ 175
R F+ +ND+ ++ + E + + DT L
Sbjct: 211 RQN-----WPEDKRKYFIKTGSSLDNDKPGKEVKLGERERSISPLLFEDTPPDLQPPGNP 265
Query: 176 -------MENTEDFQELAIAGV----IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGL 224
N ++FQ + G +V+EIR + KT SAGIA N +LAK+
Sbjct: 266 SQVNIEEQNNPQEFQNSVVFGTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDK 325
Query: 225 HKPQKQ-SILPQSSVSM-LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQ 282
+KP Q ILP M +L I+KV + GK+ +++++ L T EL + + L
Sbjct: 326 NKPNGQYQILPDRQAVMDFIKDLPIRKVSGI-GKVTEKMLKALGIITCTEL--YQQRALL 382
Query: 283 S-HFEEKTASWLYYIARGI 300
S F E + +++ G+
Sbjct: 383 SLLFSETSWHQFLHVSMGL 401
>gi|422679986|ref|ZP_16738259.1| DNA polymerase IV [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|331009333|gb|EGH89389.1| DNA polymerase IV [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 353
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 130/314 (41%), Gaps = 85/314 (27%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I ID DCFY +E + P L GKPLAV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPELAGKPLAV-------GGAAERRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + Y+ A RE+ + ++++++E S+DE
Sbjct: 54 GVRSAMSSLHALKLCPDLTIV-------KPRMEAYKEASREIHTIFRDYTDLIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
A++D++D GH + S
Sbjct: 107 AFLDVSDA--------GHFSGS-------------------------------------- 120
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
A I ++IR V ++ SAG+A NK LAK+ KP ++
Sbjct: 121 -------------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASW 292
V A+L + K+ +G D++ + + C+ + K +L + F E+
Sbjct: 168 PDQVEDFVASLPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGER---- 223
Query: 293 LYYIARGIDHEPVN 306
L+ +A GID PV
Sbjct: 224 LWSLAHGIDDRPVQ 237
>gi|421887936|ref|ZP_16319060.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [Ralstonia solanacearum K60-1]
gi|378966697|emb|CCF95808.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [Ralstonia solanacearum K60-1]
Length = 362
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 147/351 (41%), Gaps = 83/351 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHKGVT 57
R I D DCFY +E + +P L G PLAV GG G++A NYEAR G+
Sbjct: 7 RKIIHCDCDCFYAAIEMRDDPRLVGLPLAV-------GGRPERRGVVATCNYEARKFGIH 59
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M +A + CP++ + +PS + KYR R++ A+ ++ +VE S+DEAY+
Sbjct: 60 SAMPMAQAVKRCPDLVI--LPSA-----MDKYRQVARQIFAIYQSYTPLVEPLSLDEAYL 112
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D+TD +T + G G T + E
Sbjct: 113 DVTD------------------STMLAGSG-------------------------TRIAE 129
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
+ IR V + SAG+A NK +AK+ +KP ++
Sbjct: 130 D----------------IRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPQQ 173
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V A L ++++ + GK+ + L T +L + +LQ HF L+ +
Sbjct: 174 VDAFVAALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFGS-FGFRLHDLC 231
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
RGIDH PV + KS+ + + T L T D + L D++ R+E
Sbjct: 232 RGIDHRPVQPSQIRKSVSVEETY--ATDLRTLDDCQRELTVLVDQLAARVE 280
>gi|300703898|ref|YP_003745500.1| DNA polymerase iv, devoid of proofreading, damage-inducible protein
p [Ralstonia solanacearum CFBP2957]
gi|299071561|emb|CBJ42885.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum CFBP2957]
Length = 362
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 147/351 (41%), Gaps = 83/351 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHKGVT 57
R I D DCFY +E + +P L G PLAV GG G++A NYEAR G+
Sbjct: 7 RKIIHCDCDCFYAAIEMRDDPRLVGLPLAV-------GGRPERRGVVATCNYEARKFGIH 59
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M +A + CP++ + +PS + KYR R++ A+ ++ +VE S+DEAY+
Sbjct: 60 SAMPMAQAIKRCPDLVI--LPSA-----MDKYRQVARQIFAIYQSYTPLVEPLSLDEAYL 112
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D+TD +T + G G T + E
Sbjct: 113 DVTD------------------STMLAGSG-------------------------TRIAE 129
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
+ IR V + SAG+A NK +AK+ +KP ++
Sbjct: 130 D----------------IRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPQQ 173
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V A L ++++ + GK+ + L T +L + +LQ HF L+ +
Sbjct: 174 VDAFVAALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFGS-FGFRLHDLC 231
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
RGIDH PV + KS+ + + T L T D + L D++ R+E
Sbjct: 232 RGIDHRPVQPSQIRKSVSVEETY--ATDLRTLDDCRRELTVLVDQLAARVE 280
>gi|167522010|ref|XP_001745343.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776301|gb|EDQ89921.1| predicted protein [Monosiga brevicollis MX1]
Length = 456
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 146/321 (45%), Gaps = 39/321 (12%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR+I D D FY VE + P L GKP+ + +YEAR GV M G
Sbjct: 88 SRVIVHCDADAFYAAVELRDQPHLRGKPIGIGGIGMLSTA-----SYEARKFGVRSAMPG 142
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A + CPE+ L K Y A R++ AV++++ S+DEAY+D+TD
Sbjct: 143 YIALRLCPELILV-------KPRFHAYEAASRQLQAVMAQYDPNFRSVSLDEAYLDITDY 195
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGP---DNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ + G +A QL V P + N D+ K G+ TD++ N
Sbjct: 196 MAR--LTPGDVA--QLPPLTTVADPPLVQEANSADS-KPGMA---------TDSAGARNL 241
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
+ A+A +V ++R + TQ SAGIA N++LAK+ +KP Q LP +
Sbjct: 242 TTLEGRALAARVVHQMRTRMHETTQLTVSAGIACNRMLAKIGSDQNKPDGQFCLPADRAA 301
Query: 240 ML--YANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLY 294
+L AN+ +K+ + GK+ ++++ L C +L+ ++ LK L F + +
Sbjct: 302 ILAFLANMPTRKIPGI-GKVTEQILRELDITNCQALLQ-QRALLKLL---FTPISFDFFM 356
Query: 295 YIARGIDHEPVNARLVSKSIG 315
A GI R KSIG
Sbjct: 357 RSALGIASNNTRKRSERKSIG 377
>gi|425743150|ref|ZP_18861241.1| putative DNA polymerase IV [Acinetobacter baumannii WC-487]
gi|425484302|gb|EKU50707.1| putative DNA polymerase IV [Acinetobacter baumannii WC-487]
Length = 351
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 146/353 (41%), Gaps = 74/353 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + P L P+ + ++ I A +Y AR G+ M
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHP--RAVIAAASYPAREFGLRSAMSMS 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP + + + + KYR ++ ++ +++ ++E S+DEAY+D+T
Sbjct: 60 QARKLCPHVVII-------EPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVT--- 109
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E L Q+ S T+ ++
Sbjct: 110 --------------------------------------ENLKQIASATEVAM-------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
IR + T SAG+A NK LAK+ +KP ++ S V+
Sbjct: 124 ----------HIREDIFRLTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVASFIQ 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L +KK+ + GK+ E ++ L+ T+ +L+K L HF K LY A+GID+
Sbjct: 174 DLPLKKIPGV-GKVTQEKLQQLELHTLGDLQKIEEAVLVHHF-GKYGQQLYLYAQGIDNR 231
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
PV A + I F LA Q H LA++V + LE LN R
Sbjct: 232 PVQAERARQQISKETTFDSDFTLAQCQPYWH---GLAEKVWQSLEKK-QLNAR 280
>gi|325286065|ref|YP_004261855.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
gi|324321519|gb|ADY28984.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
Length = 365
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 150/350 (42%), Gaps = 82/350 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG-----IIAVNYEARHKGVTR 58
R I +DMD FY VE NP L GKPLAV GGG + A +YEAR GV
Sbjct: 8 RKIIHVDMDAFYASVEQLDNPELIGKPLAV-------GGGEKRGVVSAASYEARKFGVRS 60
Query: 59 HMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYID 118
M G AK++CP+ L VP ++Y+ +++ A+ + D
Sbjct: 61 AMSGYMAKRNCPD--LIFVPP-----RFARYKEISQKIRAI----------------FYD 97
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
TD+V P + DE Y D + N
Sbjct: 98 YTDLVE-----------------------PLSLDE-------------AYLDVTVNKKGN 121
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
A ++ +EIR + ++ SAGI+ NK +AK+ +KP Q + V
Sbjct: 122 PS-------ASLLAKEIRERIYNELGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEV 174
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
L I+K + GK+ E + + T L+L+ SL+ L+ HF K+ ++ Y++ R
Sbjct: 175 LAFLEELEIRKFYGV-GKVTAEKMYKVGIFTGLDLKNKSLEFLEKHF-GKSGAYYYHVVR 232
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
GI + PV + KS+G + F L++ + ++ +A+E+ RL+
Sbjct: 233 GIHNSPVKPNRIPKSVGAERTF--NENLSSEIFMLERLENIANELERRLK 280
>gi|302187171|ref|ZP_07263844.1| DNA polymerase IV [Pseudomonas syringae pv. syringae 642]
gi|422638227|ref|ZP_16701658.1| DNA polymerase IV [Pseudomonas syringae Cit 7]
gi|422664920|ref|ZP_16724793.1| DNA polymerase IV [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|330950622|gb|EGH50882.1| DNA polymerase IV [Pseudomonas syringae Cit 7]
gi|330975339|gb|EGH75405.1| DNA polymerase IV [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 353
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 128/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPDLAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+ GH + S
Sbjct: 113 EA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 230 GIDDRPVQ 237
>gi|440744147|ref|ZP_20923452.1| DNA polymerase IV [Pseudomonas syringae BRIP39023]
gi|440374409|gb|ELQ11141.1| DNA polymerase IV [Pseudomonas syringae BRIP39023]
Length = 353
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 128/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPDLAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+ GH + S
Sbjct: 113 EA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 230 GIDDRPVQ 237
>gi|421524145|ref|ZP_15970770.1| DNA polymerase IV [Pseudomonas putida LS46]
gi|402751956|gb|EJX12465.1| DNA polymerase IV [Pseudomonas putida LS46]
Length = 354
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 129/316 (40%), Gaps = 89/316 (28%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I +D DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAV-------GGSPDHRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ + +++ ++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLLIV-------KPRFEAYREASREIHTIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q YS + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWYSGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
I E+IR V SAG+A NK LAK+ KP ++
Sbjct: 124 ----------------IAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEV----VETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+ V A L + ++ +G D++ +ET C + E + +L + F E+
Sbjct: 168 PNEVETFVAALPVARLHGVGKVTADKLTRLGIET--CLHLREWSRLALVREFGSFGER-- 223
Query: 291 SWLYYIARGIDHEPVN 306
L+ +ARGID V+
Sbjct: 224 --LWGLARGIDERAVH 237
>gi|386010848|ref|YP_005929125.1| DinP [Pseudomonas putida BIRD-1]
gi|313497554|gb|ADR58920.1| DinP [Pseudomonas putida BIRD-1]
Length = 354
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 129/316 (40%), Gaps = 89/316 (28%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I +D DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAV-------GGSPDHRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ + +++ ++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLLIV-------KPRFEAYREASREIHTIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q YS + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWYSGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
I E+IR V SAG+A NK LAK+ KP ++
Sbjct: 124 ----------------IAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEV----VETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+ V A L + ++ +G D++ +ET C + E + +L + F E+
Sbjct: 168 PNEVETFVAALPVARLHGVGKVTADKLTRLGIET--CLHLREWSRLALVREFGSFGER-- 223
Query: 291 SWLYYIARGIDHEPVN 306
L+ +ARGID V+
Sbjct: 224 --LWGLARGIDERAVH 237
>gi|397695712|ref|YP_006533595.1| DNA polymerase IV [Pseudomonas putida DOT-T1E]
gi|397332442|gb|AFO48801.1| DNA polymerase IV [Pseudomonas putida DOT-T1E]
Length = 354
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 126/312 (40%), Gaps = 81/312 (25%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I +D DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAV-------GGSPDHRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ + +++ ++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLLIV-------KPRFEAYREASREIHTIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q YS + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWYSGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
I E+IR V SAG+A NK LAK+ KP ++
Sbjct: 124 ----------------IAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
+ V A L + ++ H GK+ + + L T L+L +S L F L+
Sbjct: 168 PNEVETFVAALPVARL-HGVGKVTADKLTRLGIETCLQLRDWSRLALVREFGS-FGERLW 225
Query: 295 YIARGIDHEPVN 306
+ARGID V+
Sbjct: 226 GLARGIDERAVH 237
>gi|26987938|ref|NP_743363.1| DNA polymerase IV [Pseudomonas putida KT2440]
gi|38257491|sp|Q88NK4.1|DPO4_PSEPK RecName: Full=DNA polymerase IV; Short=Pol IV
gi|24982649|gb|AAN66827.1|AE016311_7 DNA-damage-inducible protein P [Pseudomonas putida KT2440]
Length = 354
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 129/316 (40%), Gaps = 89/316 (28%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I +D DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAV-------GGSPDHRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ + +++ ++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLLIV-------KPRFEAYREASREIHTIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q YS + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWYSGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
I E+IR V SAG+A NK LAK+ KP ++
Sbjct: 124 ----------------IAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEV----VETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+ V A L + ++ +G D++ +ET C + E + +L + F E+
Sbjct: 168 PNEVETFVAALPVARLHGVGKVTADKLTRLGIET--CLHLREWSRLALVREFGSFGER-- 223
Query: 291 SWLYYIARGIDHEPVN 306
L+ +ARGID V+
Sbjct: 224 --LWGLARGIDERAVH 237
>gi|148546475|ref|YP_001266577.1| DNA polymerase IV [Pseudomonas putida F1]
gi|395447671|ref|YP_006387924.1| DNA polymerase IV [Pseudomonas putida ND6]
gi|189027676|sp|A5VZT3.1|DPO4_PSEP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|148510533|gb|ABQ77393.1| DNA-directed DNA polymerase [Pseudomonas putida F1]
gi|388561668|gb|AFK70809.1| DNA polymerase IV [Pseudomonas putida ND6]
Length = 354
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 129/316 (40%), Gaps = 89/316 (28%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I +D DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAV-------GGSPDHRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ + +++ ++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLLIV-------KPRFEAYREASREIHTIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q YS + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWYSGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
I E+IR V SAG+A NK LAK+ KP ++
Sbjct: 124 ----------------IAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEV----VETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+ V A L + ++ +G D++ +ET C + E + +L + F E+
Sbjct: 168 PNEVETFVAALPVARLHGVGKVTADKLTRLGIET--CLHLREWSRLALVREFGSFGER-- 223
Query: 291 SWLYYIARGIDHEPVN 306
L+ +ARGID V+
Sbjct: 224 --LWGLARGIDERAVH 237
>gi|256426123|ref|YP_003126776.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
gi|256041031|gb|ACU64575.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
Length = 371
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 108/431 (25%), Positives = 180/431 (41%), Gaps = 84/431 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + NP GK +AV +GG + +YEAR GV M
Sbjct: 10 RKIIHIDMDAFYASVEQRDNPEYRGKAIAVGGSPEGRGGVVATASYEARKFGVRSAMPSK 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A ++LC E+I + F DV
Sbjct: 70 RA------LQLCP------------------ELIFIRPRF-----------------DVY 88
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E + I I + R ++E L D + ++ TED Q
Sbjct: 89 KEASRKIREIFS--------------------RHTDIIEPL-----SLDEAFLDVTEDKQ 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
++ A I + I+ A+ + Q SAG++ NK +AK+ L+KP + + SS+
Sbjct: 124 QIGSAIEIAKLIKQAIKDELQLTASAGVSVNKFVAKIASDLNKPDGLTFIGPSSIESFME 183
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L ++K +G D+ ++ + T +L++ S L++HF K ++ Y I RGID
Sbjct: 184 KLPVEKFFGVGKVTADK-MKRMGLHTGADLKRLSENDLKTHF-GKVGAFYYRIVRGIDER 241
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
V +KS+G FP L ++++ ++++A V ERL+ K R L +
Sbjct: 242 EVQPHRETKSLGAEDTFP--YDLTRTEEMNAELEKIAVTVYERLKRYGL--KGRTVTLKI 297
Query: 364 SFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASK 423
+ +D + + ++S + L+ I+E + Q++ T P+ LG+S S
Sbjct: 298 KY---SDFRQITRNQSFPVPVGDLEKILETAKQLLLSTEPE------DKPVRLLGISLSN 348
Query: 424 FS---PLGSHP 431
F P+ + P
Sbjct: 349 FGEIVPVNNRP 359
>gi|83745844|ref|ZP_00942901.1| DNA polymerase IV [Ralstonia solanacearum UW551]
gi|83727534|gb|EAP74655.1| DNA polymerase IV [Ralstonia solanacearum UW551]
Length = 362
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 147/351 (41%), Gaps = 83/351 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHKGVT 57
R I D DCFY +E + +P L G PLAV GG G++A NYEAR G+
Sbjct: 7 RKIIHCDCDCFYAAIEMRDDPRLVGWPLAV-------GGRPEQRGVVATCNYEARKFGIH 59
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M +A + CP++ + +PS + KYR R++ A+ ++ +VE S+DEAY+
Sbjct: 60 SAMPMAQAVKRCPDLVI--LPSA-----MDKYRQVARQIFAIYQSYTPLVEPLSLDEAYL 112
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D+TD +T + G G T + E
Sbjct: 113 DVTD------------------STMLAGSG-------------------------TRIAE 129
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
+ IR V + SAG+A NK +AK+ +KP ++
Sbjct: 130 D----------------IRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQ 173
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V A L ++++ + GK+ + L T +L + +LQ HF L+ +
Sbjct: 174 VDAFVAALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFGS-FGFRLHDLC 231
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
RGIDH PV + KS+ + + T L T D + L D++ R+E
Sbjct: 232 RGIDHRPVQPSQIRKSVSVEETY--ATDLRTLDDCRRELTVLVDQLAARVE 280
>gi|386333331|ref|YP_006029500.1| DNA polymerase iv, devoid of proofreading, damage-inducible protein
p [Ralstonia solanacearum Po82]
gi|334195778|gb|AEG68963.1| DNA polymerase iv, devoid of proofreading, damage-inducible protein
p [Ralstonia solanacearum Po82]
Length = 362
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 147/351 (41%), Gaps = 83/351 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHKGVT 57
R I D DCFY +E + +P L G PLAV GG G++A NYEAR G+
Sbjct: 7 RKIIHCDCDCFYAAIEMRDDPRLVGLPLAV-------GGRPERRGVVATCNYEARKFGIH 59
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M +A + CP++ + +PS + KYR R++ A+ ++ +VE S+DEAY+
Sbjct: 60 SAMPMAQAVKRCPDLVI--LPSA-----MDKYRQVARQIFAIYQSYTPLVEPLSLDEAYL 112
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D+TD +T + G G T + E
Sbjct: 113 DVTD------------------STMLAGSG-------------------------TRIAE 129
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
+ IR V + SAG+A NK +AK+ +KP ++
Sbjct: 130 D----------------IRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQ 173
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V A L ++++ + GK+ + L T +L + +LQ HF L+ +
Sbjct: 174 VDAFVAALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFGS-FGFRLHDLC 231
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
RGIDH PV + KS+ + + T L T D + L D++ R+E
Sbjct: 232 RGIDHRPVQPSQIRKSVSVEETY--ATDLRTLDDCRRELTVLVDQLAARVE 280
>gi|396463787|ref|XP_003836504.1| hypothetical protein LEMA_P040400.1 [Leptosphaeria maculans JN3]
gi|312213057|emb|CBX93139.1| hypothetical protein LEMA_P040400.1 [Leptosphaeria maculans JN3]
Length = 706
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 51/283 (18%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
I+ D DCFY V NPSL PLAV Q I+ NYEAR +G+ + E
Sbjct: 93 IVLHFDYDCFYASVFEHENPSLKTLPLAVQQKQI-----IVTCNYEARRRGLHKLQLITE 147
Query: 65 AKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLTDV 122
A++ CP++ + V G+ D++++RNA +++ A L FS + ER +DE ++D++D+
Sbjct: 148 ARRLCPDVVV-----VLGE-DLTRFRNASKQLYAYLRSFSWNSRCERLGLDEVFMDVSDM 201
Query: 123 VHERMKSIGHIAASQLSNTF--------VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
+ + + AS N+F VGF + DA + +G VY +T
Sbjct: 202 IDYNLA----LLASATQNSFFLLSKEDPTVGF-----ELDATRV-----VGHVYPETVHR 247
Query: 175 LMENTEDFQ------ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQ 228
+ L +A + + +R + +T + +AGIA NK+L+KLV HKP
Sbjct: 248 STSDVPSSSSDPLHIRLLLASHLAQHLRTRLEEETGYTATAGIATNKLLSKLVGNQHKPN 307
Query: 229 KQ-SILP---------QSSVSMLYANLSIKKVRHLGGKLGDEV 261
Q ++LP +V+ L I K+ +G K+ ++
Sbjct: 308 AQTTLLPPYLGTDETGHDNVTAFMDELEIGKIPGIGFKIAQQL 350
>gi|400601497|gb|EJP69140.1| impB/mucB/samB family protein [Beauveria bassiana ARSEF 2860]
Length = 574
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 126/270 (46%), Gaps = 25/270 (9%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII D DCFY QV +P L GK L V Q N + NY AR KGV + M
Sbjct: 15 RIILQFDYDCFYAQVMENKHPHLKGKALGVRQKNI-----LATCNYSARAKGVRKLMLVT 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSE--FSNIVERASIDEAYIDLTD 121
EAK+ CPE+ L V G+ D+S +R+ + + L ++ VER DE ++D+TD
Sbjct: 70 EAKKACPELIL-----VDGE-DLSPFRDMSKTLYGFLKSHSWNGKVERLGFDEVFMDVTD 123
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNND-EDARKAGVMEWLGQVYSDTDTSLMENTE 180
+V + S L +F F ND E + G V +++
Sbjct: 124 IVEYNFSCVNR---SALEQSF---FQLAKNDPEVGFPCDLGTVAGPVLGPCSSAVDPENA 177
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQ----S 236
LA+ + +R + S+ + + G+A NKVL+KL G HKP+ Q+ L
Sbjct: 178 VMLRLALGSHLAMHLRGIIESEFGYTSTCGVATNKVLSKLAGGKHKPRNQTTLLALTDLD 237
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQ 266
+V+ + A+L ++ V +G K+ + T+
Sbjct: 238 AVAFMDAHL-LRDVPGIGFKMAQRIESTVM 266
>gi|408387835|gb|EKJ67540.1| hypothetical protein FPSE_12285 [Fusarium pseudograminearum CS3096]
Length = 1141
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 145/350 (41%), Gaps = 61/350 (17%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+ R + +D D F+C V K P L KP AVV ++T G I + NY AR GV M
Sbjct: 355 SRRYVMHVDFDSFFCAVSLKKKPELINKP-AVVAHSTGSGSEIASCNYPAREFGVKNGMW 413
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A + CP++++ D Y A R + + +V+ SIDEA ID+T
Sbjct: 414 MKSALEMCPDLKVL-------PYDFPAYEEASRLFYESILDIGGVVQSVSIDEALIDITS 466
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
VV MKS G SQ G GPD+ EN
Sbjct: 467 VV---MKSAG----SQ-------GMGPDS--------------------------ENIA- 485
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
E +AG I +++R + S T H S GI N + AK+ KP Q L V +
Sbjct: 486 -LERDMAGKIAKDLREQIKSLTDCHVSVGIGANILQAKVALRKAKPAGQYQLEPGDVLDM 544
Query: 242 YANLSIKKV----RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+L ++++ R + GKL E + + +L + S ++L S KT L A
Sbjct: 545 IGDLKVEQLPGVARSIRGKL-----EDIGVVLVKDLREVSKERLVSILGPKTGEKLREYA 599
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
GID V + KS+ + ++ + ++ L E+ ERL
Sbjct: 600 LGIDRTEVGEQPPRKSVSAEVNW--GIRFISQPEAEEFVYNLCKELEERL 647
>gi|207742975|ref|YP_002259367.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum IPO1609]
gi|206594371|emb|CAQ61298.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum IPO1609]
Length = 357
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 147/351 (41%), Gaps = 83/351 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHKGVT 57
R I D DCFY +E + +P L G PLAV GG G++A NYEAR G+
Sbjct: 2 RKIIHCDCDCFYAAIEMRDDPRLVGWPLAV-------GGRPEQRGVVATCNYEARKFGIH 54
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M +A + CP++ + +PS + KYR R++ A+ ++ +VE S+DEAY+
Sbjct: 55 SAMPMAQAVKRCPDLVI--LPSA-----MDKYRQVARQIFAIYQSYTPLVEPLSLDEAYL 107
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D+TD +T + G G T + E
Sbjct: 108 DVTD------------------STMLAGSG-------------------------TRIAE 124
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
+ IR V + SAG+A NK +AK+ +KP ++
Sbjct: 125 D----------------IRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQ 168
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V A L ++++ + GK+ + L T +L + +LQ HF L+ +
Sbjct: 169 VDAFVAALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFGS-FGFRLHDLC 226
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
RGIDH PV + KS+ + + T L T D + L D++ R+E
Sbjct: 227 RGIDHRPVQPSQIRKSVSVEETY--ATDLRTLDDCRRELTVLVDQLAARVE 275
>gi|452974954|gb|EME74773.1| DNA polymerase IV [Bacillus sonorensis L12]
Length = 418
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 74/122 (60%), Gaps = 7/122 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I IDM+ FY VE +PSL GKPLA+ + G ++ +YEAR +GV M
Sbjct: 8 GRVIFHIDMNSFYASVETAYDPSLSGKPLAIAGNAKERKGIVVTCSYEARARGVKPPMPL 67
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CPE+ + + P + +YR++ RE+ VL E++++VE SIDE Y+DLTD
Sbjct: 68 WEAKRLCPEL-IVKPP------NFDRYRSSSREMFQVLREYTDLVEPVSIDEGYMDLTDT 120
Query: 123 VH 124
+
Sbjct: 121 PY 122
>gi|443686513|gb|ELT89764.1| hypothetical protein CAPTEDRAFT_151315 [Capitella teleta]
Length = 674
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 121/255 (47%), Gaps = 54/255 (21%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHMR 61
SR I IDMD FY VE + NPSL P+AV G +++ NYEAR GV M
Sbjct: 119 SRTIVHIDMDAFYAAVEMRDNPSLKNIPMAV------GGSAMLSTSNYEARRFGVRAAMP 172
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
G AK+ CP++ + VP+ + KYR ++V +L ++ + S+DEAY+D+T
Sbjct: 173 GFIAKKLCPDLVI--VPT-----NFDKYRQVSKDVKEILLQYDPNMCPMSLDEAYLDITQ 225
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+ ER + A Q TF D + R GV + ED
Sbjct: 226 HLAER----KNFDAEQ--KTFRTA------DGEQRMFGV-----------------DAED 256
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP--QSSVS 239
+V+EIR + KTQ SAGIA N +LAK+ +KP Q ++P + +V
Sbjct: 257 ---------VVQEIRFRIEVKTQLTASAGIAPNMMLAKVCSDFNKPNGQYLIPFNRQAVM 307
Query: 240 MLYANLSIKKVRHLG 254
+L ++KV +G
Sbjct: 308 DFVKDLPVRKVCGIG 322
>gi|294625057|ref|ZP_06703705.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292600642|gb|EFF44731.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
Length = 359
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 128/305 (41%), Gaps = 74/305 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARTFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D ++Y+ R+V + +++VE S+DEAY+D+T
Sbjct: 58 AVRAERLCPDAIF--VPP-----DFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQ 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
K G M+ +V T + E T
Sbjct: 111 A----------------------------------KTG-MQLATEVAQLIRTQIREET-- 133
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q A AG+ A NK LAK+ KP Q ++ S V
Sbjct: 134 -QLTASAGI---------------------APNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L + L++LQ+HF S LY ARGID
Sbjct: 172 LLPLKVNRIPGV-GKVMDGKLAALGIVTVADLRQRPLEELQAHFGSFGQS-LYRRARGID 229
Query: 302 HEPVN 306
PV
Sbjct: 230 ERPVE 234
>gi|367008858|ref|XP_003678930.1| hypothetical protein TDEL_0A03870 [Torulaspora delbrueckii]
gi|359746587|emb|CCE89719.1| hypothetical protein TDEL_0A03870 [Torulaspora delbrueckii]
Length = 637
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/410 (23%), Positives = 169/410 (41%), Gaps = 72/410 (17%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTR------ 58
++ ID++CFY QVE P+ VQ+N+ I+AV+Y AR G+TR
Sbjct: 25 VLCHIDVNCFYAQVEAVRCGYTKDDPVVCVQWNS-----IVAVSYAARKYGITRMNTIQQ 79
Query: 59 ---------------HMRGDEAKQH------CPEIELCRVPSVRGKADISKYRNAGREVI 97
+G++ Q+ E + ++PS K + YR R++
Sbjct: 80 ALKKTQDLIPIHTAVFRKGEDFWQYHDGWGPWNEDKEKQLPSSIYKISLDPYRRESRKIF 139
Query: 98 AVLSEFSNIVERASIDEAYIDLTDVVHER-MKSIGHIAASQLSNTFVV---GFGPDNNDE 153
+ +E+ ++ E+AS+DE ++D+ + ++ M S + + NT + F D
Sbjct: 140 KIFTEYCDLAEKASVDEVFLDIARLCLQKLMGSEQILPGKENHNTIQLMQQMFKDGTYDS 199
Query: 154 DARKAGV------MEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHC 207
DA V ++++G + + D L+E+ +D A+ I +E+R + +
Sbjct: 200 DAFLPPVPEELKELKFVGNLLNPNDEPLIEDWDDVL-FALGSQIAQELRDEIRQNLGYTT 258
Query: 208 SAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY--ANLSIKKVRHLGGKLGDEVVETL 265
S G+A K++ KL KP Q+I+ S ++ I LGG LG E+++ L
Sbjct: 259 SCGLARTKIVCKLASNFKKPDAQTIIKNSCINAFLDIGKFEITSFWSLGGILGKELIQVL 318
Query: 266 QC---STMLELE---------KFSLKQLQSHFEEK--------------TASWLYYIARG 299
T+ + + L + F K A LY RG
Sbjct: 319 HLPEDGTIRAVRERWPQRDDLRIYLNRSAREFASKGQANGIIDLSRTNEVADKLYDAVRG 378
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED 349
PV + + KS+ K G+ C + D W++ A E+ R+ +
Sbjct: 379 QHRLPVVPQTMVKSLMSNKNMTGQAC-NSLGDCFSWLEVFAGELAGRVHE 427
>gi|104783086|ref|YP_609584.1| DNA polymerase IV [Pseudomonas entomophila L48]
gi|122402270|sp|Q1I6D5.1|DPO4_PSEE4 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|95112073|emb|CAK16800.1| DNA polymerase IV, damage-inducible protein P [Pseudomonas
entomophila L48]
Length = 354
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 127/314 (40%), Gaps = 85/314 (27%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I ID DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHIDCDCFYAAIEMRDDPRLAGRPMAV-------GGQPGQRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++E+ K YR A R++ + ++++++E S+DE
Sbjct: 54 GVRSAMASGHALKLCPDLEIV-------KPRFEAYREASRDIHTIFRDYTDLIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D+TD Q ++ + T
Sbjct: 107 AYLDVTD-------------------------------------------SQWFAGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
+ E+ IR V + SAG+A NK LAK+ KP ++
Sbjct: 124 IAED----------------IRRRVAQQLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETL--QCSTMLELEKFSLKQLQSHFEEKTASW 292
V A L + ++ +G D++ C + + + +L + F E+
Sbjct: 168 PDQVEEFVAQLPVARLHGVGKVTADKLARLGIDTCHALRDWPRLALVREFGSFGER---- 223
Query: 293 LYYIARGIDHEPVN 306
L+ +ARGID V
Sbjct: 224 LWGLARGIDERAVQ 237
>gi|417840269|ref|ZP_12486413.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
gi|341949079|gb|EGT75689.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
Length = 355
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 144/340 (42%), Gaps = 71/340 (20%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMDCFY +E + NP+L GKP+A V ++ + G + NYEAR G+ M +A +
Sbjct: 10 IDMDCFYASIEIRENPNLQGKPVA-VGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIKK 68
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP + L VP +++ Y+ ++ + +++I+E S+DEAY+D+T
Sbjct: 69 CPNLIL--VP-----VNMALYKQVSAQIHQIFHRYTDIIEPLSLDEAYLDVTHC------ 115
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
+ +G W+ Q
Sbjct: 116 --------------------------QKCSGSATWIAQ---------------------- 127
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
EIR A+ + SAG+A K LAK+ ++KP Q ++ + VS LS+
Sbjct: 128 -----EIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNEVSEFIKTLSLN 182
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
K+ + GK+ + + + T +++ F L + F K ++ + GID V A
Sbjct: 183 KIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQF-GKAGKRIWDFSHGIDDREVQAH 240
Query: 309 LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
KS+G + + T + S + L DE+ RLE
Sbjct: 241 RERKSVGVEQTLIEN--IHTIEQASELLNNLYDELIRRLE 278
>gi|254525120|ref|ZP_05137175.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
gi|219722711|gb|EED41236.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
Length = 364
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 160/394 (40%), Gaps = 93/394 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR GV M
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARVFGVRSAMP 60
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D ++Y+ R+ + E ++ TD
Sbjct: 61 ALRAERLCPDAIF--VPP-----DFARYKAVSRQ----------------VREIFLRHTD 97
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V P + DE + ++ TE
Sbjct: 98 LVE-----------------------PLSLDE--------------------AYLDVTEP 114
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+ +A I IR + +TQ SAGIA NK LAK+ KP Q ++P V
Sbjct: 115 KSGIELATDIARTIREQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVEAF 174
Query: 242 YANLSIKKVRHLG----GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
L + +V +G GKL + T C +L +++L L+ F S LY A
Sbjct: 175 LTPLPVNRVPGVGKVMEGKLAARGIVT--CG---DLRQWALIDLEEAFGSFGRS-LYNRA 228
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVC------ERLEDDL 351
RG+D PV A +SI F L +D+S I +LA++ ER+ +
Sbjct: 229 RGVDERPVEADQQVQSISSEDTFAEDLLL---EDLSEAIVQLAEKTWNATRKTERVGHTV 285
Query: 352 TLNKRRAQ--LLTVSFTQETDGKVNSCSRSIALA 383
L + AQ +LT SFT + R IALA
Sbjct: 286 VLKLKTAQFRILTRSFTPDRPPDSMEELRDIALA 319
>gi|260821886|ref|XP_002606334.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
gi|229291675|gb|EEN62344.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
Length = 493
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 193/414 (46%), Gaps = 64/414 (15%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV---NYEARHKGVTRH 59
SR I +DMD FY VE + NP+L KP+AV GGI + NY AR GV
Sbjct: 85 SRTIVHLDMDAFYAAVEMRDNPALRDKPMAV--------GGIDMLSTSNYLARKYGVRAA 136
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M G K+ CP++ + VP+ + KY R+V VL ++ S+DEAY+DL
Sbjct: 137 MPGFIGKKLCPDLVI--VPT-----NFDKYCAVSRQVRDVLGQYDPNFAPMSLDEAYMDL 189
Query: 120 TDVVH------ERMKSI-GHI---AASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYS 169
TD + E M++ H+ + + S+T +N+DED LG+ +
Sbjct: 190 TDYLKLRESLPEEMRTFYAHVEGCVSKKDSST-------ENHDEDG-------MLGE--T 233
Query: 170 DTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQK 229
T+ + E + F A +V EIR + +T+ SAGIA N +LAK+ +KP
Sbjct: 234 QTNVKMSETSVVFG--CDAEEVVREIRFRIEQRTRLTASAGIAPNMMLAKVCSDQNKPNG 291
Query: 230 QSILP--QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL-EKFSLKQLQSHFE 286
Q +P + ++ NL ++KV + GK+ + + L ST L E+ ++ L F
Sbjct: 292 QFCIPSDRQAIMDFIRNLPVRKVCGI-GKVMAQQLNALGISTCTHLYEQRAV--LSLLFS 348
Query: 287 EKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSH--WIQELADEVC 344
++S L +A G+ + KS+ + F + L+ D+ W E+C
Sbjct: 349 PVSSSHLLRVALGLGATRIERESERKSMSVERTF---SELSKPADLYRKCW------ELC 399
Query: 345 ERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVI 398
E L DL + + +T+ + + V +++ A +++I +V+ +++
Sbjct: 400 EALAKDLQDEGLKGRTITIKL-KTVNFDVKQRGQTVPRAVSSMKEIYDVAEELL 452
>gi|118497578|ref|YP_898628.1| DNA polymerase IV [Francisella novicida U112]
gi|195536274|ref|ZP_03079281.1| ImpB/MucB/SamB family protein [Francisella novicida FTE]
gi|226738234|sp|A0Q6K9.1|DPO4_FRATN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|118423484|gb|ABK89874.1| DNA-damage inducible protein P [Francisella novicida U112]
gi|194372751|gb|EDX27462.1| ImpB/MucB/SamB family protein [Francisella tularensis subsp.
novicida FTE]
Length = 349
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 131/312 (41%), Gaps = 71/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A A I + + TD V
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAAS----------------AVIRDIFYSFTDKV 100
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDF 182
P + DE Y D TD +N+
Sbjct: 101 E-----------------------PLSLDE-------------AYLDVTDVKEYKNS--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 -----ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQVDSFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L +KK+ + GK+ E ++T+ T L+L++ SL L F K + LY ARGID+
Sbjct: 177 KDLPVKKLFGV-GKVSQEKLKTMNVETCLDLQQLSLATLLDKF-GKFGNNLYSYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KS+
Sbjct: 235 REVNPVRIRKSV 246
>gi|386716938|ref|YP_006183264.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
gi|384076500|emb|CCH11081.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
Length = 364
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 159/394 (40%), Gaps = 93/394 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR GV M
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARVFGVRSAMP 60
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D ++Y+ R+ + E ++ TD
Sbjct: 61 ALRAERLCPDAIF--VPP-----DFARYKAVSRQ----------------VREIFLRHTD 97
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V P + DE + ++ TE
Sbjct: 98 LVE-----------------------PLSLDE--------------------AYLDVTEP 114
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+ +A I IRA + +T SAGIA NK LAK+ KP Q ++P V
Sbjct: 115 KSGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAF 174
Query: 242 YANLSIKKVRHLG----GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
L + +V +G GKL + T C +L ++SL L+ F S LY A
Sbjct: 175 LLPLPVNRVPGVGKVMEGKLAARGIVT--CG---DLRRWSLVDLEEAFGSFGRS-LYNRA 228
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVC------ERLEDDL 351
RGID PV +SI F L +D+ I +LA++ ER+ +
Sbjct: 229 RGIDERPVEPDQQVQSISSEDTFAEDLLL---EDLGEAIVQLAEKTWNATRKTERVGHTV 285
Query: 352 TLNKRRAQ--LLTVSFTQETDGKVNSCSRSIALA 383
L + AQ +LT SFT E + R IALA
Sbjct: 286 VLKLKTAQFRILTRSFTPERPPESMEELRDIALA 319
>gi|60686906|gb|AAX35542.1| DNA polymerase kappa [Xenopus laevis]
Length = 862
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 181/389 (46%), Gaps = 57/389 (14%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII +DMD FY VE + NP L KP+AV + + NY AR GV M G
Sbjct: 101 SRIIVHVDMDAFYAAVEMRDNPELKDKPMAVGSKSM-----LSTSNYLARRFGVRAAMPG 155
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP + + VP + KYR EV +L+++ S+DEAY+D TD
Sbjct: 156 FIAKKLCPALII--VP-----PNFDKYRAVSSEVREILAQYDPNFLPMSLDEAYLDFTDH 208
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL----GQVYSDT-----DT 173
+ ER+ + ++ TF++ G +N++E+ +G E + ++ D+ D
Sbjct: 209 LSERL------SWTEDKRTFII--GAENSEENKPLSGKQEQVECTSPILFEDSPSFVADQ 260
Query: 174 SLMENTED---------FQELAIAGVIVE----EIRAAVLSKTQFHCSAGIAHNKVLAKL 220
++ + +D ++ + G VE E+R + KT SAGIA N +LAK+
Sbjct: 261 NVSQPGQDTTEEIRRPSLEKAVVFGTSVEEAVKEMRFRIEQKTTLTASAGIAPNTMLAKV 320
Query: 221 VCGLHKPQKQSILP--QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSL 278
+KP Q + + ++ +L I+KV + GK+ +++++ L+ T +L +
Sbjct: 321 CSDKNKPNGQYRIANDRQAIKDFIKDLPIRKVPGI-GKVTEKMLKALEVVTCTDL--YQQ 377
Query: 279 KQLQSHFEEKTASW--LYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWI 336
+ L S +T SW +I+ G+ V KS+ + F + +++ ++
Sbjct: 378 RALLSLLFSET-SWQNFVHISLGLGSTHVERDGERKSMSTERTF---SEMSSAEEQYGLC 433
Query: 337 QELADEVCERLEDDLTLNKRRAQLLTVSF 365
QEL C L DL + + +T+
Sbjct: 434 QEL----CRDLSKDLQKEGLKGKTVTIKL 458
>gi|373467387|ref|ZP_09558686.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
gi|371758922|gb|EHO47678.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
Length = 355
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 143/340 (42%), Gaps = 71/340 (20%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMDCFY +E + NP+L GKP+A V ++ + G + NYEAR G+ M +A +
Sbjct: 10 IDMDCFYASIEIRENPNLQGKPVA-VGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIKK 68
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP + L V +++ Y+ ++ + +++I+E S+DEAY+D+T
Sbjct: 69 CPNLILVPV-------NMTLYKQVSAQIHQIFQRYTDIIEPLSLDEAYLDVTHC------ 115
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
+ +G W+ Q
Sbjct: 116 --------------------------QKCSGSATWIAQ---------------------- 127
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
EIR A+ + + SAGIA K LAK+ ++KP Q ++ + VS L +
Sbjct: 128 -----EIRQAIFDELKLTASAGIAPLKFLAKIASDMNKPNGQFVIKPNEVSEFIKTLPLN 182
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
K+ + GK+ + + + T +++ F L + F K ++ + GID V A
Sbjct: 183 KIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQF-GKAGKRIWDFSHGIDDREVQAH 240
Query: 309 LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
KS+G + + T + S + L DE+ RLE
Sbjct: 241 RERKSVGVEQTLIEN--IHTIEQASALLNNLYDELIRRLE 278
>gi|354491803|ref|XP_003508043.1| PREDICTED: DNA polymerase kappa-like, partial [Cricetulus griseus]
Length = 407
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 148/321 (46%), Gaps = 47/321 (14%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
I +DMD FY VE + NP L KP+AV + + NY AR GV M G A
Sbjct: 102 IVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 156
Query: 66 KQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 125
K+ CP +L VP + KYR +EV +L+E+ S+DEAY+++T + E
Sbjct: 157 KRLCP--QLIIVP-----PNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLEE 209
Query: 126 R--MKSIGHIAASQLSNTFVV---GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME--- 177
R +++ N+ + G + ED R + ++ D+ L
Sbjct: 210 RQNWPEDKRRYFNKMGNSIKIDKPGEEANRLSEDERSISPL-----LFEDSPPDLQPQGN 264
Query: 178 ----NTED------FQELAIAGV----IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCG 223
N+E+ FQ + G +V+EIR + KT SAGIA N +LAK+
Sbjct: 265 PFQLNSEEQNSPQIFQNSVVFGTSAEEVVKEIRFRIEQKTMLTASAGIAPNTMLAKVCSD 324
Query: 224 LHKPQKQ-SILPQSSVSM-LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQL 281
+KP Q ILP V M +L I+KV + GK+ ++++ L T EL + + L
Sbjct: 325 KNKPNGQYQILPSRKVVMDFIKDLPIRKVSGI-GKVTEKMLMALGIVTCTEL--YQQRAL 381
Query: 282 QSHFEEKTASWLYY--IARGI 300
S +T SW Y+ IA G+
Sbjct: 382 LSLLFSET-SWHYFLHIALGL 401
>gi|196001133|ref|XP_002110434.1| hypothetical protein TRIADDRAFT_22932 [Trichoplax adhaerens]
gi|190586385|gb|EDV26438.1| hypothetical protein TRIADDRAFT_22932 [Trichoplax adhaerens]
Length = 653
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 122/448 (27%), Positives = 196/448 (43%), Gaps = 64/448 (14%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR I +DMD FY +E + NPSL KP+AV G ++ NY AR GV M G
Sbjct: 85 SRFIVHVDMDAFYAAIEIRDNPSLADKPMAV-----GGTGMMLTSNYIARRYGVRAAMPG 139
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
K+ CP++ V K + +KY A +EV A+L+E+ S+DEAY+DLT+
Sbjct: 140 FIGKRLCPDL-------VFVKPNSAKYAQASKEVRAILAEYDPNFASVSLDEAYMDLTEY 192
Query: 123 VHERMKSI--GHIAASQLSNTFVVGFGPDNN-DEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ R + H+ F V P + ED +++ L +V T +
Sbjct: 193 LEGRKCTFPSSHVE-------FTV---PQQDLTED-----MLKILNEVAPPTVDGVDSYN 237
Query: 180 EDFQELAIAGV--------IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
+I V ++ EIR + KT+ SAGI NK+LAK+ KP Q
Sbjct: 238 NCSSNSSIRKVSFGHTIEDVMREIRFKINRKTKLTASAGIGPNKMLAKICSDWKKPNGQF 297
Query: 232 IL--PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL-EKFSLKQLQSHFEEK 288
+ + + L +K+ + GK+ + ++ ++ S EL +K L L F
Sbjct: 298 KVEFTRDKIIEFMRQLPTRKISGI-GKVSERLLNEIEISNCKELYDKRDLIYLL--FSNV 354
Query: 289 TASWLYYIARGIDHEPVNAR-LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
+ + +A GI V+++ KSI C + F + LA D+ Q+L D + +
Sbjct: 355 STKFFLAVAMGIGSNEVSSKNYQRKSISCERTFGEISRLA---DMLVKCQKLCDNLANHM 411
Query: 348 -EDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASY--KLQDIVEVSMQVINKTNSA 404
++++T +L TV+F + RS++L + ++ ++ +VI A
Sbjct: 412 KKENITGRCLTVKLKTVAFEVK--------QRSVSLKHHTNSTTEMFNIASEVIRSERLA 463
Query: 405 PPISDLTPPLLFLGLSASKFSPLGSHPS 432
P L L L K S L H S
Sbjct: 464 -----CQPERLRLRLMGIKMSTLKRHES 486
>gi|74418666|gb|ABA03146.1| Dpo4 [Acidianus infernus]
Length = 354
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 138/313 (44%), Gaps = 69/313 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNT-WKGGGIIA-VNYEARHKGVTRHMRG 62
I+ +D D F+ QVE LNP L GKP+AV ++ +K G IA NYEAR G+ M
Sbjct: 2 IVLFVDFDYFFAQVEEVLNPELKGKPVAVCVFSGRFKDSGAIATANYEARKLGIKSGMPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+AK+ P + + D+ K + + R + +LS++S+ +E ASIDEAY+D+TD
Sbjct: 62 PKAKEIAPNAIYLPI-----RKDLYK-QVSDRIMYGILSKYSSKIEIASIDEAYLDITDR 115
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V + + A QL G DE
Sbjct: 116 VKD------YYEAYQL--------GKKIKDE----------------------------- 132
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
+ K + + GIA NKV AK++ ++KP IL V
Sbjct: 133 ----------------IYQKEKITVTIGIAPNKVFAKIIAEMNKPNGLGILKPEEVEGFI 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L I++V +G + ++ E ++ + ++ K ++L+ + AS+LY +A
Sbjct: 177 RSLPIEEVPGVGDSIYSKLKE-MEIKYLYDVLKVDFEKLKKEIGKSKASYLYSLANNTYA 235
Query: 303 EPVNARLVSKSIG 315
EPV + V K IG
Sbjct: 236 EPVKEK-VRKHIG 247
>gi|323507618|emb|CBQ67489.1| related to DNA polymerase eta [Sporisorium reilianum SRZ2]
Length = 831
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN 244
LA+ ++ +R VL + + SAGIA NK L+KL KP Q+I+ SV+ +++
Sbjct: 399 LALGAELMNRVRQNVLDELGYTTSAGIASNKTLSKLCSSWRKPNGQTIMRPCSVANFFSS 458
Query: 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEP 304
L +K+R LGGKLG+ + +T+ +L + L ++Q+ F E+ A W+Y + RGID+
Sbjct: 459 LPFQKIRFLGGKLGNAMGIEWNSATVADLWQVGLDEMQAKFGEE-ARWVYNVLRGIDYSE 517
Query: 305 VNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED 349
V R+ ++++ K + + ++ HW+ LA E+ RL +
Sbjct: 518 VRERVNNQTMLASKSV--RPAITRPEEAIHWLGILATELAIRLRE 560
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 72/154 (46%), Gaps = 31/154 (20%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R++A D+D Y Q E +L P+AV Q+ G+IAVNY AR GV+R
Sbjct: 116 RVVAHCDVDAAYAQFEASRLGLDATVVPIAVQQWQ-----GLIAVNYPARDAGVSRFESI 170
Query: 63 DEAKQHCPEIELCRVPS-VRG---------------KADISKYRNAGREVIAVLSEFS-- 104
EA + CP++ L V + G K + YR RE +LS F
Sbjct: 171 PEALKKCPDLHLVHVATYAHGSNRADYHPDPKPETHKVSLDPYR---RESTKILSIFKKT 227
Query: 105 ---NIVERASIDEAYIDLTDVVHERM-KSIGHIA 134
VE+ASIDE+Y DLT V + M + H+A
Sbjct: 228 CPHGAVEKASIDESYFDLTIEVRKLMVERFPHLA 261
>gi|345430002|ref|YP_004823122.1| DNA polymerase IV [Haemophilus parainfluenzae T3T1]
gi|301156065|emb|CBW15536.1| DNA polymerase IV [Haemophilus parainfluenzae T3T1]
Length = 377
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 135/314 (42%), Gaps = 69/314 (21%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
++R I IDMDCFY VE + NP+L GKP+A V ++ + G + NYEAR G+ M
Sbjct: 25 STRKIIHIDMDCFYASVEIRENPTLQGKPVA-VGGSSRQRGVLTTCNYEARKFGLHSAMP 83
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+A + CP + L VP ++ Y+ ++ + +++I+E S+DEAY+D+TD
Sbjct: 84 TAQAIKKCPNLIL--VP-----VNMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYLDVTD 136
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+Q S G W+ Q
Sbjct: 137 -------------CTQCS-------------------GSATWIAQ--------------- 149
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
EIR A+ + + SAG+A K LAK+ ++KP Q ++ V
Sbjct: 150 ------------EIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQPHEVEQF 197
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L +KK+ + GK+ E + + T +++K L + F K ++ + GID
Sbjct: 198 VKTLPLKKIPGV-GKVTSERLLKMGLETCEDVQKLDQSILLNIF-GKMGKRIWDFSHGID 255
Query: 302 HEPVNARLVSKSIG 315
+ A KSIG
Sbjct: 256 EREIQAHRERKSIG 269
>gi|148234382|ref|NP_001086552.1| DNA-directed DNA polymerase kappa [Xenopus laevis]
gi|49899074|gb|AAH76794.1| Polk-prov protein [Xenopus laevis]
Length = 862
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 181/389 (46%), Gaps = 57/389 (14%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII +DMD FY VE + NP L KP+AV + + NY AR GV M G
Sbjct: 101 SRIIVHVDMDAFYAAVEMRDNPELKDKPMAVGSKSM-----LSTSNYLARRFGVRAAMPG 155
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP + + VP + KYR EV +L+++ S+DEAY+D TD
Sbjct: 156 FIAKKLCPALII--VP-----PNFDKYRAVSSEVREILAQYDPNFLPMSLDEAYLDFTDH 208
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL----GQVYSDT-----DT 173
+ ER+ + ++ TF++ G +N++E+ +G E + ++ D+ D
Sbjct: 209 LSERL------SWTEDKRTFII--GAENSEENKPLSGKQEQVECTSPILFEDSPSFVADQ 260
Query: 174 SLMENTED---------FQELAIAGVIVE----EIRAAVLSKTQFHCSAGIAHNKVLAKL 220
++ + +D ++ + G VE E+R + KT SAGIA N +LAK+
Sbjct: 261 NVSQPGQDTTEEIRRPSLEKAVVFGTSVEEAVKEMRFRIEQKTTLTASAGIAPNMMLAKV 320
Query: 221 VCGLHKPQKQSILP--QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSL 278
+KP Q + + ++ +L I+KV + GK+ +++++ L+ T +L +
Sbjct: 321 CSDKNKPNGQYRIANDRQAIKDFIKDLPIRKVPGI-GKVTEKMLKALEVVTCTDL--YQQ 377
Query: 279 KQLQSHFEEKTASW--LYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWI 336
+ L S +T SW +I+ G+ V KS+ + F + +++ ++
Sbjct: 378 RALLSLLFSET-SWQNFVHISLGLGSTHVERDGERKSMSTERTF---SEMSSAEEQYGLC 433
Query: 337 QELADEVCERLEDDLTLNKRRAQLLTVSF 365
QEL C L DL + + +T+
Sbjct: 434 QEL----CRDLSKDLQKEGLKGKTVTIKL 458
>gi|254293831|ref|YP_003059854.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
gi|254042362|gb|ACT59157.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
Length = 360
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 159/351 (45%), Gaps = 82/351 (23%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG-----IIAVNYEARHKGVT 57
SR I IDMD F+ VE + +P+L GKP+AV GGG + A +YEAR GV
Sbjct: 6 SRKIIHIDMDAFFASVEQRDDPTLRGKPVAV-------GGGEARGVVAAASYEAREYGVR 58
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M AK+ CP +L VP + D+ Y++ ++ + +++++++E S+DEAY+
Sbjct: 59 SAMASVAAKKRCP--DLIFVPP---RFDV--YKSVSNQIRNIFAQYTHLIEPLSLDEAYL 111
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D+TD +K I +A+Q++ ME ++ +T +
Sbjct: 112 DVTD----NLKGIE--SATQIA---------------------MEIRAEILKETGLT--- 141
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
A AGV ++NK +AKL +KP Q ++P S
Sbjct: 142 --------ASAGV---------------------SYNKFIAKLASDENKPNGQCVIPPKS 172
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
A L I++ + G + + +E L T +L+K L L+ +F +A + Y A
Sbjct: 173 GEQFVAGLPIRRFYGV-GPVTAKKMERLGILTGADLKKADLSWLRQNF-GNSADYYYAAA 230
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
RG D V + KS+G + + L ++++ ++L + ER+E
Sbjct: 231 RGKDDRIVQPNRIRKSVGVERTY--SKDLFEKEEILTETEKLITLLWERIE 279
>gi|428184339|gb|EKX53194.1| hypothetical protein GUITHDRAFT_51641, partial [Guillardia theta
CCMP2712]
Length = 190
Score = 97.8 bits (242), Expect = 3e-17, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 102/230 (44%), Gaps = 41/230 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I D DCFY QVE +P L PL + Q ++ NY AR GVT+ M +
Sbjct: 2 RVILHFDADCFYAQVEELRDPKLREVPLGITQKFL-----VVTCNYPARRAGVTKLMAIE 56
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP + L V G+ D++ YR R + +VL F + ER +DE ++D+T
Sbjct: 57 DAKKKCPGLVL-----VSGE-DLTPYRLTSRRIFSVLQRFGSAAERLGMDEVWVDVTAAC 110
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ M +E+A + G + L ++ Q
Sbjct: 111 KKMM------------------------EENAERRWQGHEGGYLRRGGRVCLRHSSAAGQ 146
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
G AV +T SAGIAHNK+LAKL GLHKP Q+ L
Sbjct: 147 RDCTEG------EGAVKEETGIRTSAGIAHNKLLAKLASGLHKPDDQTSL 190
>gi|390189952|emb|CCD32185.1| DNA-directed DNA polymerase [Methylocystis sp. SC2]
Length = 376
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 132/318 (41%), Gaps = 70/318 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE + P L GKP+AV + G + A +YEAR GV M
Sbjct: 24 RKIIHVDMDAFYASVEQRDRPELRGKPVAV--GGERERGVVAAASYEARKFGVRSAMPSV 81
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A++ CP++ V+ + D+ Y+ ++ A+ +E+++++E S+DEAY+D+T
Sbjct: 82 TARRKCPDLVF-----VKPRFDV--YKEISLQIRAIFAEYTSVIEPLSLDEAYLDVT--- 131
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ +K +G TE Q
Sbjct: 132 -KNLKGLG---------------------------------------------TATEIAQ 145
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
E+ R + +T SAG+++NK LAKL KP ++ +
Sbjct: 146 EI----------RRNIRCETGLTASAGVSYNKFLAKLASDHRKPDGLFVITPKMGASFVE 195
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+ + K H G + T L+L +L L HF Y+IARG+DH
Sbjct: 196 EMPVGKF-HGVGPATSAKMNRHGIYTGLDLRAQTLPFLLKHF-GMAGQHFYWIARGVDHR 253
Query: 304 PVNARLVSKSIGCCKRFP 321
PV A V KSIG FP
Sbjct: 254 PVRADRVRKSIGVENTFP 271
>gi|429740249|ref|ZP_19273948.1| putative DNA polymerase IV [Prevotella saccharolytica F0055]
gi|429153802|gb|EKX96570.1| putative DNA polymerase IV [Prevotella saccharolytica F0055]
Length = 363
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 148/342 (43%), Gaps = 72/342 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE + +P+L GKP+AV + +T + + +YEAR G+ M
Sbjct: 8 RKIIHVDMDAFYASVEQRDDPTLRGKPIAVCR-DTCRSV-LTTASYEARRFGIHSAMPVT 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AK+ CPE L VP D +KY+ +V A+ D TD++
Sbjct: 66 RAKKMCPE--LIIVPP-----DFAKYKAVSSQVHAIFH----------------DYTDII 102
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ T++
Sbjct: 103 E-----------------------PLSLDE--------------------AFLDVTQNKL 119
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+ +A I ++IR + ++ SAG+++NK LAK+ KP +++ +
Sbjct: 120 NIPLAVDIAKQIRQRIRNELHLTASAGVSYNKFLAKVASDYRKPDGLTVIHPDRAKDFIS 179
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
NL I+ +GGK + + +L ++SL++L F + A + Y ARGID
Sbjct: 180 NLRIEDFWGVGGKTA-HTMHRMGIFIGYDLRRYSLQRLMQEFGKMGAVY-YNFARGIDLR 237
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQ--DVSHWIQELADEV 343
PV A V KS+GC + F T + ++ ++ H + EL + +
Sbjct: 238 PVEAFSVRKSVGCEQTFMEDTDIPSKLIIELYHLVLELVERI 279
>gi|148653720|ref|YP_001280813.1| DNA-directed DNA polymerase [Psychrobacter sp. PRwf-1]
gi|148572804|gb|ABQ94863.1| DNA-directed DNA polymerase [Psychrobacter sp. PRwf-1]
Length = 369
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 133/317 (41%), Gaps = 69/317 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE + NP L GKPL VV + G + A +YE R GV M
Sbjct: 17 RKIIHLDMDAFYASVEQRDNPQLRGKPL-VVGGDPSGRGVVAAASYEIRKFGVRSAMSCY 75
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CPE VR + ++ YR +++ ++ +++VE S+DEAY+D+T +
Sbjct: 76 EAKRRCPEAIF-----VRPRFEV--YRQVSQQIRDIMLSLTDLVEPLSLDEAYLDVTGI- 127
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
H +A+ ++N WL
Sbjct: 128 -----KAHHGSATLMAN----------------------WL------------------- 141
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
RA + +TQ SAG++ NK+LAK+ ++KP +++ A
Sbjct: 142 ------------RAQIYEQTQLRASAGVSFNKMLAKIASDINKPNGIAVITPDQADAFIA 189
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L I++ H GK + + + T +L + L+ F K + IA G D+
Sbjct: 190 TLPIERF-HGIGKATAKRLHEMGIYTGADLRAAPVDTLEYEF-GKRGRFYSEIAHGNDNR 247
Query: 304 PVNARLVSKSIGCCKRF 320
PV A KS+G F
Sbjct: 248 PVKAERKHKSVGSETTF 264
>gi|415767181|ref|ZP_11483050.1| DNA polymerase IV [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416103602|ref|ZP_11589505.1| DNA polymerase IV [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|444345989|ref|ZP_21153986.1| DNA polymerase IV [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|348007879|gb|EGY48166.1| DNA polymerase IV [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|348658637|gb|EGY76203.1| DNA polymerase IV [Aggregatibacter actinomycetemcomitans D17P-2]
gi|443542162|gb|ELT52525.1| DNA polymerase IV [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
Length = 360
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 131/312 (41%), Gaps = 69/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMDCFY E + NPSL KP+A V + G + NY AR G+ M
Sbjct: 10 RKIIHIDMDCFYASTEIRENPSLADKPVA-VGGRAEQRGVLTTCNYAAREFGLHSAMPTA 68
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A Q CP + L V ++ YR +++ + +++I+E S+DEAY+D+TD
Sbjct: 69 QALQLCPNLVLLPV-------NMPLYREVSQQIHQIFQRYTSIIEPLSLDEAYLDVTDC- 120
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ AG W+ Q
Sbjct: 121 -------------------------------DKCAGSATWIAQ----------------- 132
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+IR+A+ ++ SAG+A K LAK+ +KP Q ++ V+ A
Sbjct: 133 ----------DIRSAIFNELHLTASAGVAPLKFLAKIASDQNKPNGQFVIEPKEVADFVA 182
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L +KK+ + GK+ E + + +T +++K+ L + F K ++ + GID
Sbjct: 183 ALPLKKIPGV-GKVTSEKLLQMGLATCADVQKYDRNALFNLF-GKVGQHIWAYSHGIDER 240
Query: 304 PVNARLVSKSIG 315
PV KS+G
Sbjct: 241 PVQPHRERKSVG 252
>gi|365981949|ref|XP_003667808.1| hypothetical protein NDAI_0A04080 [Naumovozyma dairenensis CBS 421]
gi|343766574|emb|CCD22565.1| hypothetical protein NDAI_0A04080 [Naumovozyma dairenensis CBS 421]
Length = 643
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 124/513 (24%), Positives = 209/513 (40%), Gaps = 94/513 (18%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
+A ID++ F+ QVE P+ VQ+N+ IIAV+Y AR G++R EA
Sbjct: 28 MAHIDVNAFFAQVEQIRCDYTRDDPVVCVQWNS-----IIAVSYAARKYGISRMDTIHEA 82
Query: 66 KQHCPEI---------------------------ELCRVPSVRGKADISKYRNAGREVIA 98
+ C + + ++P K + YR R++
Sbjct: 83 MKKCDHLIPIHTAVFKKGESWWTYYDGYGSWMKEKEKQLPPDNYKVSLDPYRRESRKLFK 142
Query: 99 VLSEFSNIVERASIDEAYIDLTDVVHE-RMKSIGHI-----AASQLSNTFVVGFGPDNND 152
+ E+ VE+AS+DE ++DL + E M S + A + NTF+ N +
Sbjct: 143 IFKEYCYSVEKASVDEVFLDLGRLCFEDLMFSDDEVFQKSEAMQAIRNTFI------NGE 196
Query: 153 EDARKA--------GVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQ 204
D + A +E+ G V++ + L+ + +D A+A +++R +
Sbjct: 197 YDLQTALPSLPDELKNLEFTGMVFNPANRPLLNDWDDII-FALASRETQKMRDVIKESLG 255
Query: 205 FHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN--LSIKKVRHLGGKLGDEVV 262
+ S GIA K +AKL KP Q+I+ + + N I LGGKLG E+
Sbjct: 256 YTTSCGIARTKNVAKLGSNFRKPDAQTIIKNNCLEDFLDNGSFEITSFWTLGGKLGKEIC 315
Query: 263 ETL--------------QCSTMLELEKFSLKQLQ---SHFEEKT----------ASWLYY 295
+ L ++ ELE F KQL+ F E T A ++
Sbjct: 316 QVLNLPPKDSIKYIRNTWANSPKELESFLEKQLEERGGQFNELTTIDSTNIHTLAKKIFE 375
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED-DLTLN 354
++RG+ +N R + KS+ K +C + D W++ + E+ R+++ + N
Sbjct: 376 LSRGVHPVQLNTRPLVKSMMSNKNMRSSSC-KSLIDCIDWLEVFSGELATRIQELEQEYN 434
Query: 355 K----RRAQLLTVSFTQETDGKVNSC-SRSIALASYKLQDIVEVSMQVINKTNS--APPI 407
K R A +L + ET K +R LA QD++ + ++ + + A P
Sbjct: 435 KVIIPRSATVLMKTTLGETYRKTTQLHNRDSKLAC---QDLLNATSKMAAELDKKYAEPN 491
Query: 408 SDLTPPLLFLGLSASKFSPLGSHPSIQQFFKPQ 440
S PL + L S F L ++ F Q
Sbjct: 492 SKKFYPLTNMNLVISNFEILDLKKTVLDMFGNQ 524
>gi|289550388|ref|YP_003471292.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
gi|289179920|gb|ADC87165.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
Length = 359
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 150/347 (43%), Gaps = 71/347 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD F+ QVE + NP L GKP+ +V G + +YEAR GV M
Sbjct: 1 MTERRIVHIDMDFFFAQVEMRDNPKLRGKPV-IVGGKASSRGVVSTASYEARKYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP+ V+G+ + KYR E++++ ++ VE S+DEAY+D+T
Sbjct: 60 PMSQAHKLCPDGYY-----VQGQYE--KYRTISNEIMSIFRSYTEAVEPMSLDEAYLDIT 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+V + ASQ++N R+ +Y T +
Sbjct: 113 HLVRP------DLPASQIANYI-------------RR--------DIYEKTHLT------ 139
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A AGV ++NK LAKL G++KP +++ +V
Sbjct: 140 -----ASAGV---------------------SYNKFLAKLASGMNKPNGMTVIDYENVHK 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ L I + GK ++++ +L + + +L F K LY ARGI
Sbjct: 174 ILMALDIGDFPGV-GKASEKIMHKHGIYNGQDLYQKDVFELVRLF-GKRGRGLYNKARGI 231
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
D PV + + KS+G + F T + ++ + EL+ + ERL
Sbjct: 232 DDSPVKSSRIRKSVGTERTFA--TDVNDDDEILQKMWELSGKTAERL 276
>gi|384176005|ref|YP_005557390.1| DNA polymerase IV 1 [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349595229|gb|AEP91416.1| DNA polymerase IV 1 [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 414
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 72/119 (60%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 GRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+HCP EL +P + +YR++ R + +L E++++VE SIDE Y+D+TD
Sbjct: 65 WEAKRHCP--ELIVLPP-----NFDRYRSSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>gi|334325286|ref|XP_001368809.2| PREDICTED: DNA polymerase kappa [Monodelphis domestica]
Length = 856
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 121/470 (25%), Positives = 194/470 (41%), Gaps = 65/470 (13%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
I IDMD FY VE + NP L KP+AV + NY AR GV M G A
Sbjct: 94 IIHIDMDAFYAAVEMRDNPELRDKPIAVGSMRM-----LATSNYHARRFGVRAAMPGFIA 148
Query: 66 KQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 125
K+ CP++ + + KYR +EV +L+++ S+DEAY+++T + E
Sbjct: 149 KRLCPQLTIV-------APNFDKYRKISKEVREILADYDPNFMAMSLDEAYLNITKHLEE 201
Query: 126 RM-----KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSL----- 175
R K I S VG +ED + ++ D+ L
Sbjct: 202 RQNWPEDKRRHFIKTENPSENEAVGSRAPELNEDTLSVSPL-----LFEDSPPQLKKPEP 256
Query: 176 -------MENTEDFQEL---AIAGV----IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLV 221
E D Q L I G +V+EIR + KT SAGIA N VLAK+
Sbjct: 257 EIPSQEHFEEQRDPQGLQNSVIFGTSAEEVVKEIRFRIKQKTSLTASAGIAPNTVLAKVC 316
Query: 222 CGLHKPQKQSILP--QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL-EKFSL 278
+KP Q +P + +V +L I+KV + GK+ +++++ L T +L +K +L
Sbjct: 317 SDKNKPNGQYQIPPTRQAVMDFIKDLPIRKVPGI-GKVTEKMLKALGIITCSDLYQKRAL 375
Query: 279 KQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQE 338
L F E + +I+ G+ + KS + F T + +
Sbjct: 376 --LSLLFSETSWHSFLHISLGLGSTQMERDGERKSRSIERTF-------TEISKAEELYS 426
Query: 339 LADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVI 398
L E+C L DL + + +T+ + + +V + + ++A ++I ++ +++
Sbjct: 427 LCQELCSDLAQDLQREGLKGKTVTIKL-KNVNFEVKTRASTVAAVVSTAEEIFAIAKELL 485
Query: 399 NKTNSAPPISDLTPP--LLFLGLSASKFS----PLGSHPSIQQFFKPQDH 442
A D P L +G+ S F+ P SI F K H
Sbjct: 486 KAEIDA----DYPQPLRLRLMGVRISGFANEEDPKNRQRSIISFLKAGGH 531
>gi|333369735|ref|ZP_08461838.1| DNA-directed DNA polymerase IV [Psychrobacter sp. 1501(2011)]
gi|332969996|gb|EGK08995.1| DNA-directed DNA polymerase IV [Psychrobacter sp. 1501(2011)]
Length = 370
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 132/317 (41%), Gaps = 69/317 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE + P L GKPL VV + G + A +YE R GV M
Sbjct: 18 RKIIHLDMDAFYASVEQRDFPELRGKPL-VVGGDPSGRGVVAAASYEIRKFGVRSAMSCY 76
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CPE VR + ++ YR +E+ A++ +++VE S+DEAY+D+T +
Sbjct: 77 EAKKRCPEAIF-----VRPRFEV--YRQVSQEIRAIMLSLTDLVEPLSLDEAYLDVTGIK 129
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
H +A+ ++N WL
Sbjct: 130 EH------HGSATLMAN----------------------WL------------------- 142
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
RA + KT SAG++ NK+LAK+ ++KP +++ A
Sbjct: 143 ------------RAEIYEKTHLRASAGVSFNKMLAKIASDINKPNGIAVITPEQADDFIA 190
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L I++ H GK + + + T +L+ + L+ F K + IA G D
Sbjct: 191 TLPIERF-HGIGKATAKRLHEMGIYTGADLKAMPVDNLEHEF-GKRGRFYSEIAHGNDTR 248
Query: 304 PVNARLVSKSIGCCKRF 320
PV A KS+G F
Sbjct: 249 PVKAERKHKSVGSETTF 265
>gi|342887896|gb|EGU87324.1| hypothetical protein FOXB_02200 [Fusarium oxysporum Fo5176]
Length = 1139
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 132/315 (41%), Gaps = 59/315 (18%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R + +D D F+C V K NP KP AVV ++T G I + NY AR GV M
Sbjct: 355 RYVMHVDFDSFFCAVSLKKNPEYIDKP-AVVAHSTGSGSEIASCNYPAREFGVKNGMWMK 413
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A + CPE+++ D Y A R + + +V+ SIDEA +D+T +V
Sbjct: 414 SALEMCPELKVL-------PYDFPAYEEASRLFYESILDIGGLVQSVSIDEALVDITPIV 466
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
L+N+ G G D ENT +
Sbjct: 467 --------------LTNSNSEGTGSD--------------------------AENTA--R 484
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
E +A + +++R V S T H S GI N + AK+ KP Q L +V +
Sbjct: 485 EHDMADKLAKDLRDKVKSLTGCHVSVGIGANILQAKVALRKAKPAGQYQLKSENVLHIMG 544
Query: 244 NLSIKKV----RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+L + ++ R +GGKL E + + + +L + S ++L S KT L ARG
Sbjct: 545 DLKVDQLPGVARSIGGKL-----EDIGVTHVKDLREVSKERLTSILGPKTGEKLREYARG 599
Query: 300 IDHEPVNARLVSKSI 314
ID V + KS+
Sbjct: 600 IDRSEVGEQPPRKSV 614
>gi|384266001|ref|YP_005421708.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387899020|ref|YP_006329316.1| DNA polymerase IV [Bacillus amyloliquefaciens Y2]
gi|380499354|emb|CCG50392.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387173130|gb|AFJ62591.1| DNA polymerase IV [Bacillus amyloliquefaciens Y2]
Length = 422
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +PSL GKP+AV + G II +YEAR +GV M
Sbjct: 13 GRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIITCSYEARARGVKTTMPV 72
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP EL VP + +YR++ +E+ ++L E++++VE SIDE Y+D+TD
Sbjct: 73 WRAKRLCP--ELIVVPP-----NFDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDT 125
Query: 123 VH 124
H
Sbjct: 126 PH 127
>gi|418636789|ref|ZP_13199128.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
gi|374840485|gb|EHS03978.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
Length = 359
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 150/347 (43%), Gaps = 71/347 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD F+ QVE + NP L GKP+ +V G + +YEAR GV M
Sbjct: 1 MTERRIVHIDMDFFFAQVEMRDNPKLRGKPV-IVGGKASSRGVVSTASYEARKYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP+ V+G+ + KYR E++++ ++ VE S+DEAY+D+T
Sbjct: 60 PMSQAHKLCPDGYY-----VQGQYE--KYRTISNEIMSIFRSYTEAVEPMSLDEAYLDIT 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+V + ASQ++N R+ +Y T +
Sbjct: 113 HLVRP------DLPASQIANYI-------------RR--------DIYEKTHLT------ 139
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A AGV ++NK LAKL G++KP +++ +V
Sbjct: 140 -----ASAGV---------------------SYNKFLAKLASGMNKPNGMTVIDYENVHK 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ L I + GK ++++ +L + + +L F K LY ARGI
Sbjct: 174 ILMALDIGDFPGV-GKASEKIMHKHGIYNGQDLYQKDVFELVRLF-GKRGRGLYNKARGI 231
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
D PV + + KS+G + F T + ++ + EL+ + ERL
Sbjct: 232 DDSPVKSSRIRKSVGTERTFA--TDVNDDDEILQKMWELSGKTAERL 276
>gi|22164048|dbj|BAC07274.1| MUS42 [Neurospora crassa]
Length = 1098
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 145/347 (41%), Gaps = 55/347 (15%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+ R I +D D F+C V K P KP AVV + KG I + NY AR GV M
Sbjct: 364 SRRYIMHVDFDSFFCAVSLKKAPEYRDKP-AVVAHGNGKGSEIASCNYPARKFGVKNGMW 422
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A + CP++++ D Y A R+ + E +V+ SIDEA ID+TD
Sbjct: 423 MKHALELCPDLKIL-------PYDFPGYEEASRQFYDAILEIGGVVQSVSIDEALIDVTD 475
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V S G +G ++ S+ E
Sbjct: 476 IVMAEAGSSG------------IGI------------------------SEGSIWREQEK 499
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSM 240
++A ++R + +T H S GI N +LAK+ KP Q I P+ ++
Sbjct: 500 VDQMA------SKLRDRIKEQTDCHVSVGIGANILLAKVALRKAKPAGQYQIKPEEALDF 553
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
L L+++ + + +G + +E L + ++ + S ++L S KT L+ +RGI
Sbjct: 554 L-GELNVEDLPGVAHSIGAK-LEELGIKFVKDIRQTSKERLISALGPKTGEKLWEYSRGI 611
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
D V + + KS+ + +++ +++ L+ E+ RL
Sbjct: 612 DRTEVGEQPIRKSVSAEVNW--GIRFVNQEEAEEFVRSLSQELERRL 656
>gi|308174178|ref|YP_003920883.1| translesion synthesis (TLS-) DNA polymerase Y1 [Bacillus
amyloliquefaciens DSM 7]
gi|384160034|ref|YP_005542107.1| DNA polymerase IV [Bacillus amyloliquefaciens TA208]
gi|384164958|ref|YP_005546337.1| translesion synthesis (TLS-) DNA polymerase Y1 [Bacillus
amyloliquefaciens LL3]
gi|384169098|ref|YP_005550476.1| DNA polymerase IV [Bacillus amyloliquefaciens XH7]
gi|307607042|emb|CBI43413.1| translesion synthesis (TLS-) DNA polymerase Y1 [Bacillus
amyloliquefaciens DSM 7]
gi|328554122|gb|AEB24614.1| DNA polymerase IV [Bacillus amyloliquefaciens TA208]
gi|328912513|gb|AEB64109.1| translesion synthesis (TLS-) DNA polymerase Y1 [Bacillus
amyloliquefaciens LL3]
gi|341828377|gb|AEK89628.1| DNA polymerase IV [Bacillus amyloliquefaciens XH7]
Length = 422
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +PSL GKPLAV + G I+ +YEAR +GV M
Sbjct: 13 GRIIFHIDMNSFYASVEMAYDPSLKGKPLAVAGNVKERKGIIVTCSYEARARGVKTTMPV 72
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP EL VP + +YR++ +E+ ++L E++++VE SIDE Y+D+TD
Sbjct: 73 WRAKRLCP--ELIVVPP-----NFDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDT 125
Query: 123 VH 124
H
Sbjct: 126 PH 127
>gi|254369305|ref|ZP_04985317.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC022]
gi|157122255|gb|EDO66395.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC022]
Length = 349
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 131/312 (41%), Gaps = 71/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFTQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A A I + + TD V
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAAS----------------AVIRDIFYSFTDKV 100
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDF 182
P + DE Y D TD +N+
Sbjct: 101 E-----------------------PLSLDE-------------AYLDVTDVKEYKNS--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 -----ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQVDSFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L +KK+ + GK+ E ++++ T L+L++ SL L F K S LY ARGID+
Sbjct: 177 KDLPVKKLFGV-GKVSQEKLKSMGVETCLDLQQLSLATLVDKF-GKFGSSLYNYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KSI
Sbjct: 235 REVNPVRIRKSI 246
>gi|338740349|ref|YP_004677311.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
gi|337760912|emb|CCB66745.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
Length = 361
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 124/256 (48%), Gaps = 21/256 (8%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D + ++ TE+ + L A EIR+ + S+T SAG+++NK LAKL +HKP Q
Sbjct: 107 DEAYLDVTENLRGLPTAADTATEIRSRIFSETGLTASAGVSYNKFLAKLASDMHKPNGQF 166
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
++P + L++KK H G + E + TL T +L SL+ LQ HF K+
Sbjct: 167 VIPPQRGAEFIEALAVKKF-HGVGPVTAEKLNTLGIYTGADLRAQSLEFLQQHF-GKSGG 224
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEV---CERLE 348
W Y IARG D PV KS G FP L ++ + E+AD+V CE+
Sbjct: 225 WYYAIARGEDDRPVEPNRPRKSSGSETTFPEDRFLPA--EIEEGVLEMADDVWVWCEK-- 280
Query: 349 DDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPIS 408
N+ +TV + TD ++ + SR++ + ++S+ ++ S P+S
Sbjct: 281 -----NRSFGATVTVKI-KYTDFQIITRSRTVTAPIATHDRLRDISLSLV---RSVYPVS 331
Query: 409 DLTPPLLFLGLSASKF 424
+ +G++ SKF
Sbjct: 332 K---GIRLVGVAVSKF 344
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE + NP L GKP+AV + K G + A +YEAR GV M
Sbjct: 7 RKIIHVDMDAFYASVEQRDNPDLRGKPVAV--GHGAKRGVVAAASYEARAFGVRSAMAST 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A + CP +L VP YR R++ + +E++ + E S+DEAY+D+T+
Sbjct: 65 TALRQCP--DLIFVPP-----RFEVYRAISRQIREIFAEYTPLFEPLSLDEAYLDVTE 115
>gi|52080931|ref|YP_079722.1| DNA polymerase IV [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319645113|ref|ZP_07999346.1| YqjH protein [Bacillus sp. BT1B_CT2]
gi|404489813|ref|YP_006713919.1| DNA polymerase IV [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423682900|ref|ZP_17657739.1| DNA polymerase IV [Bacillus licheniformis WX-02]
gi|52004142|gb|AAU24084.1| UMUC-like DNA-repair protein DinB1 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348808|gb|AAU41442.1| DNA polymerase 4 [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317392922|gb|EFV73716.1| YqjH protein [Bacillus sp. BT1B_CT2]
gi|383439674|gb|EID47449.1| DNA polymerase IV [Bacillus licheniformis WX-02]
Length = 418
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 7/122 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I IDM+ FY VE +PSL G+PLA+ + G ++ +YEAR +GV M
Sbjct: 8 GRVIFHIDMNSFYASVEMAYDPSLKGRPLAIAGNAKERKGIVVTCSYEARARGVKPPMPL 67
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CPE+ + + P + +YR++ RE+ VL E++++VE SIDE Y+DLTD
Sbjct: 68 WEAKRLCPEL-IVKPP------NFDRYRSSSREMFQVLREYTDLVEPVSIDEGYMDLTDT 120
Query: 123 VH 124
+
Sbjct: 121 PY 122
>gi|385792952|ref|YP_005825928.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678277|gb|AEE87406.1| DNA polymerase IV [Francisella cf. novicida Fx1]
Length = 350
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 129/307 (42%), Gaps = 71/307 (23%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMD F+ QVE K NPSL KP AV N K G I NY AR G+ M A Q
Sbjct: 10 IDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGIRSAMPTAIAMQK 68
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP + L D +KY+ A A I + + TD V
Sbjct: 69 CPNLILLN-------TDFAKYKAAS----------------AVIRDIFYSFTDKVE---- 101
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDFQELAI 187
P + DE Y D TD +N+
Sbjct: 102 -------------------PLSLDE-------------AYLDVTDVKEYKNS-------- 121
Query: 188 AGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSI 247
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V +L +
Sbjct: 122 ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQVDSFVKDLPV 181
Query: 248 KKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNA 307
KK+ + GK+ E ++T+ T L+L++ SL L F K + LY ARGID+ VN
Sbjct: 182 KKLFGV-GKVSQEKLKTMNVETCLDLQQLSLATLLDKF-GKFGNNLYSYARGIDNREVNP 239
Query: 308 RLVSKSI 314
+ KS+
Sbjct: 240 VRIRKSV 246
>gi|21230058|ref|NP_635975.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769949|ref|YP_244711.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. 8004]
gi|188993162|ref|YP_001905172.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. B100]
gi|24211642|sp|Q8PCW8.1|DPO4_XANCP RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81304097|sp|Q4UQI2.1|DPO4_XANC8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21111581|gb|AAM39899.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66575281|gb|AAY50691.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. 8004]
gi|167734922|emb|CAP53134.1| DNA polymerase IV [Xanthomonas campestris pv. campestris]
Length = 359
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 128/305 (41%), Gaps = 74/305 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARTFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ +V D ++Y+ R+V + +++VE S+DEAY+D+T+
Sbjct: 58 AVRAERLCPD-------AVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTE 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
K G M+ ++ T + E T
Sbjct: 111 A----------------------------------KTG-MQLATEIAQLIRTQIREET-- 133
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q A AG+ A NK LAK+ KP Q ++ S V
Sbjct: 134 -QLTASAGI---------------------APNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L L++LQ+HF S LY ARGID
Sbjct: 172 LLPLPVNRIPGV-GKVMDGKLAALGIVTVSDLRLRPLEELQAHFGSFGQS-LYRRARGID 229
Query: 302 HEPVN 306
PV
Sbjct: 230 ERPVE 234
>gi|298376365|ref|ZP_06986320.1| ATP-NAD kinase [Bacteroides sp. 3_1_19]
gi|298266243|gb|EFI07901.1| ATP-NAD kinase [Bacteroides sp. 3_1_19]
Length = 361
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 133/314 (42%), Gaps = 72/314 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 2 RKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAE--QRGVVAAASYEARKYGVRSAMASQ 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ V G+ D+ Y++ R+ I E + D TD++
Sbjct: 60 KAKRLCPDLIF-----VHGRMDV--YKSVSRQ----------------IHEIFHDYTDII 96
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ T++ Q
Sbjct: 97 E-----------------------PLSLDE--------------------AFLDVTDNKQ 113
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+++A I +EI+ + SAG+++NK LAK+ KP + S A
Sbjct: 114 GISLAVDIAKEIKKRIWENLNLIASAGVSYNKFLAKIASDYRKPNGLCTIHPSQALDFIA 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IARGIDH 302
L I+ + G + + TL L+L + S + L F + A LYY ARGID+
Sbjct: 174 RLPIESFWGV-GPVTARKMHTLGIHNGLQLRECSGEMLTRQFGK--AGMLYYEFARGIDN 230
Query: 303 EPVNARLVSKSIGC 316
PV A + KS+GC
Sbjct: 231 RPVEAVRIRKSVGC 244
>gi|419802488|ref|ZP_14327674.1| DNA polymerase IV [Haemophilus parainfluenzae HK262]
gi|419845026|ref|ZP_14368313.1| DNA polymerase IV [Haemophilus parainfluenzae HK2019]
gi|385190048|gb|EIF37498.1| DNA polymerase IV [Haemophilus parainfluenzae HK262]
gi|386416952|gb|EIJ31444.1| DNA polymerase IV [Haemophilus parainfluenzae HK2019]
Length = 374
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 135/314 (42%), Gaps = 69/314 (21%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
++R I IDMDCFY +E + NP+L GKP+A V ++ + G + NYEAR G+ M
Sbjct: 22 STRKIIHIDMDCFYASIEIRENPTLQGKPVA-VGGSSRQRGVLTTCNYEARKFGLHSAMP 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+A + CP + L VP ++ Y+ ++ + +++I+E S+DEAY+D+TD
Sbjct: 81 TAQAIKKCPNLIL--VP-----VNMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYLDVTD 133
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+Q S G W+ Q
Sbjct: 134 -------------CTQCS-------------------GSATWIAQ--------------- 146
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
EIR A+ + + SAG+A K LAK+ ++KP Q ++ V
Sbjct: 147 ------------EIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQPHEVEQF 194
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L +KK+ + GK+ E + + T +++K L + F K ++ + GID
Sbjct: 195 VKTLPLKKIPGV-GKVTSERLLKMGLETCEDVQKLDQSILLNIF-GKMGKRIWDFSHGID 252
Query: 302 HEPVNARLVSKSIG 315
+ A KSIG
Sbjct: 253 DREIQAYRERKSIG 266
>gi|375144729|ref|YP_005007170.1| DNA polymerase IV [Niastella koreensis GR20-10]
gi|361058775|gb|AEV97766.1| DNA polymerase IV [Niastella koreensis GR20-10]
Length = 358
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 134/326 (41%), Gaps = 80/326 (24%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHK 54
M R I IDMD FY VE + NP L GK +AV GG G++A +YEAR
Sbjct: 1 MAQRKIIHIDMDAFYASVEQRDNPELRGKAIAV-------GGLPENRGVVATASYEARKF 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A Q CPE+ P + Y+ R+V + +++++E S+DE
Sbjct: 54 GVRSAMPSKRAVQLCPELVFVAPPR------FAVYKAVSRQVREIFHRYTDLIEPLSLDE 107
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D+T+ + +IG A Q+ KA + + L
Sbjct: 108 AYLDVTEDKQQIGSAIG--IAKQI------------------KAAIRDEL---------- 137
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
Q A AGV + NK +AK+ ++KP + +P
Sbjct: 138 --------QLTASAGVSI---------------------NKFVAKIASDMNKPDGLTFIP 168
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
V +L + K H GK+ E + TL T +L+K + +L F K S+ Y
Sbjct: 169 PDKVEAFMESLPVNKF-HGVGKVTAEKMNTLNLFTGADLKKLTEVELVRLF-GKPGSFYY 226
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRF 320
I RGID PV +KSI F
Sbjct: 227 KIVRGIDDRPVEPNRETKSISAEDTF 252
>gi|149408451|ref|XP_001512578.1| PREDICTED: DNA polymerase kappa isoform 1 [Ornithorhynchus
anatinus]
Length = 873
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 135/294 (45%), Gaps = 43/294 (14%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
I IDMD FY VE + NP L KP+AV + + NY AR GV M G A
Sbjct: 103 IVHIDMDAFYAAVEMRDNPELRDKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 157
Query: 66 KQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 125
K+ CP + + VP+ + KYR +EV +L+E+ S+DEAY+++T + E
Sbjct: 158 KRLCPHLTI--VPT-----NFDKYREVSKEVREILTEYDPNFMAMSLDEAYLNITKHLEE 210
Query: 126 RMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVME----WLGQVYSDTDTSLMEN--- 178
R + + F G +N +R+ + E + ++ D+ L +
Sbjct: 211 RQ----NWPEDKRRYFFKAGNTAENEGAGSRQPELCEDELSFSPVLFEDSPPLLQQQGQP 266
Query: 179 TEDFQELA-------------IAGV----IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLV 221
T FQE+ I G +V EIR + KT SAGIA N +LAK+
Sbjct: 267 TIHFQEVGEEQESPQVAQNSIIFGTSAEDVVREIRFRIEQKTTLTASAGIAPNMMLAKVC 326
Query: 222 CGLHKPQKQ-SILPQSSVSM-LYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL 273
+KP Q ILP M +L I+KV + GK+ +++++ L +T +L
Sbjct: 327 SDKNKPNGQYRILPTRQAVMDFIKDLPIRKVSGI-GKVTEKMLKALGITTCTDL 379
>gi|419839102|ref|ZP_14362520.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
gi|386909813|gb|EIJ74477.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
Length = 355
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 144/340 (42%), Gaps = 71/340 (20%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMDCFY +E + NP+L GKP+A V ++ + G + NYEAR G+ M +A +
Sbjct: 10 IDMDCFYASIEIRENPNLLGKPVA-VGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIKK 68
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP + L VP +++ Y+ ++ + +++I+E S+DEAY+D+T
Sbjct: 69 CPNLIL--VP-----VNMALYKQVSAQIHQIFQRYTDIIEPLSLDEAYLDVTHC------ 115
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
+ +G W+ Q
Sbjct: 116 --------------------------QKCSGSATWIAQ---------------------- 127
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
EIR A+ + SAG+A K LAK+ ++KP Q ++ + VS LS+
Sbjct: 128 -----EIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNEVSEFIKTLSLN 182
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
K+ + GK+ + + + T +++ F L + F K ++ + GID V A
Sbjct: 183 KIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQF-GKAGKRIWDFSHGIDDREVQAH 240
Query: 309 LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
KS+G + + T + S + L DE+ RLE
Sbjct: 241 RERKSVGVEQTLVEN--IHTIEQASALLNNLYDELIRRLE 278
>gi|390990143|ref|ZP_10260433.1| ImpB/MucB/SamB family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372555108|emb|CCF67408.1| ImpB/MucB/SamB family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 359
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 128/304 (42%), Gaps = 74/304 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARIFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D ++Y+ R+V + +++VE S+DEAY+D+T
Sbjct: 58 AVRAERLCPDAIF--VPP-----DFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTH 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
K G M+ +V T + E T
Sbjct: 111 A----------------------------------KTG-MQLATEVAQLIRTQIREET-- 133
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q A AG+ A NK LAK+ KP Q ++ S V
Sbjct: 134 -QLTASAGI---------------------ASNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L + L++LQ+HF S LY ARGID
Sbjct: 172 LLPLKVNRIPGV-GKVMDGKLAALGIVTVADLRQRPLEELQAHFGSFGQS-LYRRARGID 229
Query: 302 HEPV 305
PV
Sbjct: 230 ERPV 233
>gi|398844050|ref|ZP_10601157.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM84]
gi|398254934|gb|EJN39984.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM84]
Length = 354
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 126/312 (40%), Gaps = 81/312 (25%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I ID DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHIDCDCFYAAIEMRDDPRLAGRPMAV-------GGSPDHRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ A+ +++ ++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLLIV-------KPRFEAYREASREIHAIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q ++ + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWFAGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
+ E+ IR V SAG+A NK LAK+ KP ++
Sbjct: 124 IAED----------------IRRRVARTLHITVSAGVAPNKFLAKVASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
V A L + ++ H GK+ + + L T L+L +S L F L+
Sbjct: 168 PDQVEAFVAALPVARL-HGVGKVTADKLTRLGIDTCLDLRAWSRLALVREFGS-FGERLW 225
Query: 295 YIARGIDHEPVN 306
+ARGID V+
Sbjct: 226 GLARGIDDRAVH 237
>gi|406667577|ref|ZP_11075333.1| DNA polymerase IV [Bacillus isronensis B3W22]
gi|405384630|gb|EKB44073.1| DNA polymerase IV [Bacillus isronensis B3W22]
Length = 410
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 73/129 (56%), Gaps = 11/129 (8%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M +RII +DM+ FY VE NPSL GKP+AV + G I+ +YEAR KG+ M
Sbjct: 1 MAARIIFHLDMNSFYASVEQSHNPSLKGKPIAVAGNVKERRGIIVTSSYEARAKGIYTTM 60
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
EAK+ CPE+ L D KYR A + ++L ++++VE SIDE Y+D+T
Sbjct: 61 NVGEAKRKCPELLLL-------PPDFPKYRAASAAIFSILRSYTDLVEPVSIDEGYLDVT 113
Query: 121 DVVHERMKS 129
ER KS
Sbjct: 114 ----ERSKS 118
>gi|85111590|ref|XP_964009.1| hypothetical protein NCU02053 [Neurospora crassa OR74A]
gi|28925767|gb|EAA34773.1| hypothetical protein NCU02053 [Neurospora crassa OR74A]
Length = 1347
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 145/347 (41%), Gaps = 55/347 (15%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+ R I +D D F+C V K P KP AVV + KG I + NY AR GV M
Sbjct: 364 SRRYIMHVDFDSFFCAVSLKKAPEYRDKP-AVVAHGNGKGSEIASCNYPARKFGVKNGMW 422
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A + CP++++ D Y A R+ + E +V+ SIDEA ID+TD
Sbjct: 423 MKHALELCPDLKIL-------PYDFPGYEEASRQFYDAILEIGGVVQSVSIDEALIDVTD 475
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V S G +G ++ S+ E
Sbjct: 476 IVMAEAGSSG------------IGI------------------------SEGSIWREQEK 499
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSM 240
++A ++R + +T H S GI N +LAK+ KP Q I P+ ++
Sbjct: 500 VDQMA------SKLRDRIKEQTDCHVSVGIGANILLAKVALRKAKPAGQYQIKPEEALDF 553
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
L L+++ + + +G + +E L + ++ + S ++L S KT L+ +RGI
Sbjct: 554 L-GELNVEDLPGVAHSIGAK-LEELGIKFVKDIRQTSKERLISALGPKTGEKLWEYSRGI 611
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
D V + + KS+ + +++ +++ L+ E+ RL
Sbjct: 612 DRTEVGEQPIRKSVSAEVNW--GIRFVNQEEAEEFVRSLSQELERRL 656
>gi|89256328|ref|YP_513690.1| DNA polymerase IV [Francisella tularensis subsp. holarctica LVS]
gi|156502401|ref|YP_001428466.1| DNA polymerase IV [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367662|ref|ZP_04983683.1| DNA polymerase IV, DNA damage inducible protein P [Francisella
tularensis subsp. holarctica 257]
gi|290952880|ref|ZP_06557501.1| DNA polymerase IV [Francisella tularensis subsp. holarctica URFT1]
gi|422938730|ref|YP_007011877.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC200]
gi|423050677|ref|YP_007009111.1| DNA polymerase IV [Francisella tularensis subsp. holarctica F92]
gi|122500763|sp|Q2A3L2.1|DPO4_FRATH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|226738232|sp|A7NC07.1|DPO4_FRATF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|89144159|emb|CAJ79420.1| DNA polymerase IV, devoid of proofreading,damage inducible protein
P [Francisella tularensis subsp. holarctica LVS]
gi|134253473|gb|EBA52567.1| DNA polymerase IV, DNA damage inducible protein P [Francisella
tularensis subsp. holarctica 257]
gi|156253004|gb|ABU61510.1| ImpB/MucB/SamB family protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407293881|gb|AFT92787.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC200]
gi|421951399|gb|AFX70648.1| DNA polymerase IV [Francisella tularensis subsp. holarctica F92]
Length = 349
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 131/312 (41%), Gaps = 71/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A A I + + TD V
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAAS----------------AVIRDIFYSFTDKV 100
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDF 182
P + DE Y D TD +N+
Sbjct: 101 E-----------------------PLSLDE-------------AYLDVTDVKEYKNS--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 -----ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQVDSFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L +KK+ + GK+ E ++++ T L+L++ SL L F K S LY ARGID+
Sbjct: 177 KDLPVKKLFGV-GKVSQEKLKSMGVETCLDLQQLSLATLVDKF-GKFGSSLYNYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KS+
Sbjct: 235 REVNPVRIRKSV 246
>gi|393201129|ref|YP_006462971.1| nucleotidyltransferase/DNA polymerase [Solibacillus silvestris
StLB046]
gi|327440460|dbj|BAK16825.1| nucleotidyltransferase/DNA polymerase [Solibacillus silvestris
StLB046]
Length = 410
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 70/121 (57%), Gaps = 7/121 (5%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M +RII +DM+ FY VE NPSL GKP+AV + G I+ +YEAR KG+ M
Sbjct: 1 MAARIIFHLDMNSFYASVEQAHNPSLKGKPIAVAGNVKERRGIIVTSSYEARAKGIYTTM 60
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
EAK+ CPE+ L D KYR A + ++L ++++VE SIDE Y+D+T
Sbjct: 61 NVGEAKRKCPELLLL-------PPDFPKYRAASAAIFSILRSYTDLVEPVSIDEGYLDVT 113
Query: 121 D 121
+
Sbjct: 114 E 114
>gi|302837361|ref|XP_002950240.1| hypothetical protein VOLCADRAFT_59985 [Volvox carteri f.
nagariensis]
gi|300264713|gb|EFJ48908.1| hypothetical protein VOLCADRAFT_59985 [Volvox carteri f.
nagariensis]
Length = 198
Score = 96.7 bits (239), Expect = 5e-17, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 107/225 (47%), Gaps = 43/225 (19%)
Query: 23 NPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRG 82
NP+L PL V Q I+ NY AR GVT+ M +A CP + L V G
Sbjct: 3 NPALRQVPLGVTQKYL-----IVTCNYVARAAGVTKLMGIRDAMARCPGLVL-----VSG 52
Query: 83 KADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTF 142
+ D+ YR A + + AVLS + E+ +DE ++D+T+V G +AA + N +
Sbjct: 53 E-DLGPYRQASKSIHAVLSRYGP-AEKLGMDETFVDVTEVR-------GAVAARGVGNGY 103
Query: 143 VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSK 202
G + AGV W Q L + ++ E R AV S+
Sbjct: 104 SSGAAVG-----VQSAGVESWQ------------------QLLTVGSMVAAEARLAVRSE 140
Query: 203 TQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSMLYANLS 246
T F SAGI+ NK+LAKLV GLHKP Q++ LP + + A+L+
Sbjct: 141 TGFRSSAGISSNKMLAKLVSGLHKPDDQTVLLPDQAWDFVGASLA 185
>gi|375362921|ref|YP_005130960.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|371568915|emb|CCF05765.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
Length = 422
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +PSL GKP+AV + G I+ +YEAR +GV M
Sbjct: 13 GRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKTTMPV 72
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP EL VP + +YR++ +E+ ++L E++++VE SIDE Y+D+TD
Sbjct: 73 WRAKRLCP--ELIVVPP-----NFDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDT 125
Query: 123 VH 124
H
Sbjct: 126 PH 127
>gi|344202523|ref|YP_004787666.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
gi|343954445|gb|AEM70244.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
Length = 366
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 150/350 (42%), Gaps = 82/350 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG-----IIAVNYEARHKGVTR 58
R I +DMD FY VE NP L GKP+AV GGG + A +YEAR GV
Sbjct: 8 RKIIHVDMDAFYASVEQHDNPELKGKPIAV-------GGGSKRGVVSAASYEARKFGVRS 60
Query: 59 HMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYID 118
M G A+++CPE+ VR + D +Y+ +++ + + +
Sbjct: 61 AMAGAIARRNCPELIF-----VRPRFD--RYKEISKQIRGI----------------FFE 97
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
TD+V P + DE + ++
Sbjct: 98 YTDLVE-----------------------PLSLDE--------------------AYLDV 114
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
TE+ + A +I +EIR + KT SAGI+ NK +AK+ +KP Q + V
Sbjct: 115 TENKKGNPSATLIAQEIRNKIFDKTGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEV 174
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
NL I+K + GK+ E + L T +L++ S+ L+ HF K+ S+ Y + R
Sbjct: 175 IEFLENLDIRKFYGV-GKVTAEKMYRLGIFTGFDLKQKSVDFLEKHF-GKSGSYYYNVVR 232
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
GI V + KS+G + F L++ + ++ +A E+ +RL+
Sbjct: 233 GIHLSSVKPHRIPKSVGAERTFF--ENLSSEIFMLEKLENIASELEKRLQ 280
>gi|296446214|ref|ZP_06888161.1| DNA-directed DNA polymerase [Methylosinus trichosporium OB3b]
gi|296256251|gb|EFH03331.1| DNA-directed DNA polymerase [Methylosinus trichosporium OB3b]
Length = 357
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 141/316 (44%), Gaps = 72/316 (22%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+ R I IDMD FY VE + +P+L G+P+AV + + G + A +YEAR GV M
Sbjct: 3 SQRKIIHIDMDAFYASVEQRDDPALRGRPVAV--GSPRERGVVAAASYEARKFGVRSAMP 60
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CPE L VP + D+ YR R + A+ ++D T
Sbjct: 61 SVTAQRRCPE--LIFVPP---RFDV--YREVSRGLRAI----------------FLDYTP 97
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V P + DE + ++ TE+
Sbjct: 98 LVE-----------------------PLSLDE--------------------AYLDVTEN 114
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-PQSSVSM 240
+ +A A I EEIRA + +T SAG+++NK LAKL KP ++ PQ S
Sbjct: 115 RKAMASATRIAEEIRARIKEETGLTASAGVSYNKFLAKLASDHRKPDGLFVVTPQMGPSF 174
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ A+L++ + H G + + L T +L SL+ LQ +F K+ ++ Y IARG+
Sbjct: 175 V-ADLAVGRF-HGVGPATTKKMNALGIETGRDLRAQSLEFLQRNF-GKSGAFYYGIARGV 231
Query: 301 DHEPVNARLVSKSIGC 316
D PV + KSIG
Sbjct: 232 DERPVRPDRIRKSIGA 247
>gi|21244347|ref|NP_643929.1| DNA polymerase IV [Xanthomonas axonopodis pv. citri str. 306]
gi|24211643|sp|Q8PGJ4.1|DPO4_XANAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21110002|gb|AAM38465.1| DNA polymerase IV [Xanthomonas axonopodis pv. citri str. 306]
Length = 359
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 128/304 (42%), Gaps = 74/304 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARIFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D ++Y+ R+V + +++VE S+DEAY+D+T
Sbjct: 58 AVRAERLCPDAIF--VPP-----DFTRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTH 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
K G M+ +V T + E T
Sbjct: 111 A----------------------------------KTG-MQLATEVAQLIRTQIREET-- 133
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q A AG+ A NK LAK+ KP Q ++ S V
Sbjct: 134 -QLTASAGI---------------------APNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L + L++LQ+HF S LY ARGID
Sbjct: 172 LLPLKVNRIPGV-GKVMDGKLAALGIVTVADLRQRPLEELQAHFGSFGQS-LYRRARGID 229
Query: 302 HEPV 305
PV
Sbjct: 230 ERPV 233
>gi|394992224|ref|ZP_10385014.1| DNA polymerase IV [Bacillus sp. 916]
gi|393806954|gb|EJD68283.1| DNA polymerase IV [Bacillus sp. 916]
Length = 414
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +PSL GKP+AV + G I+ +YEAR +GV M
Sbjct: 5 GRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP EL VP + +YR++ +E+ ++L E++++VE SIDE Y+D+TD
Sbjct: 65 WRAKRLCP--ELIVVPP-----NFDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDT 117
Query: 123 VH 124
H
Sbjct: 118 PH 119
>gi|350266570|ref|YP_004877877.1| DNA polymerase IV 1 [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349599457|gb|AEP87245.1| DNA polymerase IV 1 [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 414
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 73/119 (61%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 SRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+HCP EL +P + +YR++ R + +L E++++VE SIDE Y+D+TD
Sbjct: 65 WQAKRHCP--ELIILP-----PNFDRYRSSSRAMFNILREYTDLVEPVSIDEGYMDMTD 116
>gi|451346408|ref|YP_007445039.1| DNA polymerase IV [Bacillus amyloliquefaciens IT-45]
gi|449850166|gb|AGF27158.1| DNA polymerase IV [Bacillus amyloliquefaciens IT-45]
Length = 414
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +PSL GKP+AV + G I+ +YEAR +GV M
Sbjct: 5 GRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP EL VP + +YR++ +E+ ++L E++++VE SIDE Y+D+TD
Sbjct: 65 WRAKRLCP--ELIVVPP-----NFDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDT 117
Query: 123 VH 124
H
Sbjct: 118 PH 119
>gi|154686649|ref|YP_001421810.1| DNA polymerase IV [Bacillus amyloliquefaciens FZB42]
gi|429505792|ref|YP_007186976.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|452856156|ref|YP_007497839.1| DNA-damage lesion bypass DNA polymerase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|189027657|sp|A7Z6F3.1|DPO4_BACA2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|154352500|gb|ABS74579.1| YqjH [Bacillus amyloliquefaciens FZB42]
gi|429487382|gb|AFZ91306.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|452080416|emb|CCP22179.1| DNA-damage lesion bypass DNA polymerase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 414
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +PSL GKP+AV + G I+ +YEAR +GV M
Sbjct: 5 GRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP EL VP + +YR++ +E+ ++L E++++VE SIDE Y+D+TD
Sbjct: 65 WRAKRLCP--ELIVVPP-----NFDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDT 117
Query: 123 VH 124
H
Sbjct: 118 PH 119
>gi|418520920|ref|ZP_13086967.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410703343|gb|EKQ61837.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
Length = 359
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 128/305 (41%), Gaps = 74/305 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARIFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D ++Y+ R+V + +++VE S+DEAY+D+T
Sbjct: 58 AVRAERLCPDAIF--VPP-----DFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTH 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
K G M+ +V T + E T
Sbjct: 111 A----------------------------------KTG-MQLATEVAQLIRTQIREET-- 133
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q A AG+ A NK LAK+ KP Q ++ S V
Sbjct: 134 -QLTASAGI---------------------APNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L + L++LQ+HF S LY ARGID
Sbjct: 172 LLPLKVNRIPGV-GKVMDGKLAALGIVTVADLRQRPLEELQAHFGSFGQS-LYRRARGID 229
Query: 302 HEPVN 306
PV
Sbjct: 230 ERPVE 234
>gi|421731096|ref|ZP_16170222.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|407075250|gb|EKE48237.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 414
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +PSL GKP+AV + G I+ +YEAR +GV M
Sbjct: 5 GRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP EL VP + +YR++ +E+ ++L E++++VE SIDE Y+D+TD
Sbjct: 65 WRAKRLCP--ELIVVPP-----NFDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDT 117
Query: 123 VH 124
H
Sbjct: 118 PH 119
>gi|385265382|ref|ZP_10043469.1| DNA polymerase IV [Bacillus sp. 5B6]
gi|385149878|gb|EIF13815.1| DNA polymerase IV [Bacillus sp. 5B6]
Length = 422
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +PSL GKP+AV + G I+ +YEAR +GV M
Sbjct: 13 GRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKTTMPV 72
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP EL VP + +YR++ +E+ ++L E++++VE SIDE Y+D+TD
Sbjct: 73 WRAKRLCP--ELIVVPP-----NFDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDT 125
Query: 123 VH 124
H
Sbjct: 126 PH 127
>gi|332292065|ref|YP_004430674.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
gi|332170151|gb|AEE19406.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
Length = 370
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 131/312 (41%), Gaps = 70/312 (22%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
+DMD FY VE NP L GK +AV A +YEAR GV M G A++
Sbjct: 12 VDMDAFYASVEQLDNPDLRGKAIAVGGGGERGVVS--AASYEARKYGVRSAMAGALARKL 69
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP++ K + +YR ++ +V EF+++VE S+DEAY+D+T+
Sbjct: 70 CPDLIFV-------KTNFERYREVSAQIRSVFHEFTDLVEPLSLDEAYLDVTE------N 116
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
+G +A+ +++ W+ Q
Sbjct: 117 KVGMPSATVIAS----------------------WIRQ---------------------- 132
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
+ KT + SAGI+ NK +AK+ ++KP Q +P V L I+
Sbjct: 133 ---------RIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEEVITFLEELDIR 183
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
K +G K +++ T ++++ S + L +F K+ ++ Y I RGI + V
Sbjct: 184 KFYGIGKKTAEKMY-LHGIFTGMDMKMKSKEYLSDNF-GKSGAYYYDIVRGIQYSEVRPN 241
Query: 309 LVSKSIGCCKRF 320
+ KS+ + F
Sbjct: 242 RIRKSLAAERTF 253
>gi|381170537|ref|ZP_09879693.1| ImpB/MucB/SamB family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380688994|emb|CCG36180.1| ImpB/MucB/SamB family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 359
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 127/304 (41%), Gaps = 74/304 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARIFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D ++Y+ R+V + +++VE S+DEAY+D+T
Sbjct: 58 AVRAERLCPDAIF--VPP-----DFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVT- 109
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
H + +QL T + E+
Sbjct: 110 --HAKTGMQLATEVAQLIRT-----------------------------------QIREE 132
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q A AG+ A NK LAK+ KP Q ++ S V
Sbjct: 133 IQLTASAGI---------------------APNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L + L++LQ+HF S LY ARGID
Sbjct: 172 LLPLKVNRIPGV-GKVMDGKLAALGIVTVADLRQRPLEELQAHFGSFGQS-LYRRARGID 229
Query: 302 HEPV 305
PV
Sbjct: 230 ERPV 233
>gi|385784018|ref|YP_005760191.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|418413694|ref|ZP_12986910.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|339894274|emb|CCB53543.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|410877332|gb|EKS25224.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 359
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 150/347 (43%), Gaps = 71/347 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD F+ QVE + NP + GKP+ +V G + +YEAR GV M
Sbjct: 1 MTERRIVHIDMDFFFAQVEMRDNPKIRGKPV-IVGGKASSRGVVSTASYEARKYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP+ V+G+ + KYR E++++ ++ VE S+DEAY+D+T
Sbjct: 60 PMSQAHKLCPDGYY-----VQGQYE--KYRTISNEIMSIFRSYTEAVEPMSLDEAYLDIT 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+V + ASQ++N R+ +Y T +
Sbjct: 113 HLVRP------DLPASQIANYI-------------RR--------DIYEKTHLT------ 139
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A AGV ++NK LAKL G++KP +++ +V
Sbjct: 140 -----ASAGV---------------------SYNKFLAKLASGMNKPNGMTVIDYENVHK 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ L I + GK ++++ +L + + +L F K LY ARGI
Sbjct: 174 ILMALDIGDFPGV-GKASEKIMHKHGIYNGQDLYQKDVFELVRLF-GKRGRGLYNKARGI 231
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
D PV + + KS+G + F T + ++ + EL+ + ERL
Sbjct: 232 DDSPVKSSRIRKSVGTERTFA--TDVNDDDEILQKMWELSGKTAERL 276
>gi|298384083|ref|ZP_06993644.1| ATP-NAD kinase [Bacteroides sp. 1_1_14]
gi|298263687|gb|EFI06550.1| ATP-NAD kinase [Bacteroides sp. 1_1_14]
Length = 363
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD FY VE + +P L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MFQRKIIHIDMDAFYASVEQRDHPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP++ V G+ D+ Y++ R+ I E + + T
Sbjct: 59 SSQKAKRLCPQLIF-----VSGRMDV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 96 DIIE-----------------------PLSLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
+ + +++A I +EI+ + + SAG+++NK LAK+ KP +I P ++
Sbjct: 113 NKKGISLAVDIAKEIKLRIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALD 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+ A L I+ +G + + L L+L K SL+ L +HF K + Y +RG
Sbjct: 173 FI-AGLPIESFWGVGPVTAKK-MHLLGIHNGLQLRKCSLEMLTAHF-GKVGALYYECSRG 229
Query: 300 IDHEPVNARLVSKSIGC 316
ID PV A + KSIGC
Sbjct: 230 IDERPVEAVRIRKSIGC 246
>gi|398304553|ref|ZP_10508139.1| DNA polymerase IV [Bacillus vallismortis DV1-F-3]
Length = 414
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 GRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK++CP EL +P + +YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 65 WEAKRNCP--ELIVLPP-----NFDRYRNSSRAMFNILREYTDLVEPVSIDEGYMDMTDT 117
Query: 123 VH 124
+
Sbjct: 118 AY 119
>gi|150008205|ref|YP_001302948.1| DNA damage-inducible protein [Parabacteroides distasonis ATCC 8503]
gi|255015158|ref|ZP_05287284.1| DNA damage-inducible protein [Bacteroides sp. 2_1_7]
gi|256840605|ref|ZP_05546113.1| DNA damage-inducible protein [Parabacteroides sp. D13]
gi|149936629|gb|ABR43326.1| DNA damage-inducible protein [Parabacteroides distasonis ATCC 8503]
gi|256737877|gb|EEU51203.1| DNA damage-inducible protein [Parabacteroides sp. D13]
Length = 361
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 133/314 (42%), Gaps = 72/314 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 2 RKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAE--QRGVVAAASYEARKYGVRSAMASQ 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ V G+ D+ Y++ R+ I E + D TD++
Sbjct: 60 KAKRLCPDLIF-----VHGRMDV--YKSVSRQ----------------IHEIFHDYTDII 96
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ T++ Q
Sbjct: 97 E-----------------------PLSLDE--------------------AFLDVTDNKQ 113
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+++A I +EI+ + SAG+++NK LAK+ KP + S A
Sbjct: 114 GISLAVDIAKEIKKRIWENLNLIASAGVSYNKFLAKIASDYRKPNGLCTIHPSQALDFIA 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IARGIDH 302
L I+ + G + + TL L+L + S + L F + A LYY ARGID+
Sbjct: 174 RLPIESFWGV-GPVTARKMHTLGIHNGLQLRECSGEMLTRQFGK--AGILYYEFARGIDN 230
Query: 303 EPVNARLVSKSIGC 316
PV A + KS+GC
Sbjct: 231 RPVEAVRIRKSVGC 244
>gi|324505143|gb|ADY42216.1| DNA polymerase kappa [Ascaris suum]
Length = 641
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 120/259 (46%), Gaps = 24/259 (9%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRI IDMD FY VE + +PSL P+AV + NY AR GV M G
Sbjct: 82 SRIALHIDMDAFYAAVEMRDDPSLRTVPMAVGSDSMLSTS-----NYIARRYGVRAAMPG 136
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
++ CPE+++ VP D KYR A EV V E+ + + S+DEAY+D+++
Sbjct: 137 FIGRKLCPELKI--VP-----CDFHKYRAASHEVRKVFEEYDSNFQMGSLDEAYLDISEY 189
Query: 123 VHERMKSIGHIAASQLSNTFV-VGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT-- 179
R++ + + + ++ E+ + A V E L S+ +
Sbjct: 190 ALTRLEPVERARIRYTGDCICRLPLLTEDEKEEMKNAKVSEELCGKCGKMRISVCDMVCF 249
Query: 180 -EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
D +E IV E+R V T CSAGIA N ++AK+ ++KP Q + S
Sbjct: 250 GTDIEE------IVRELRFRVEQATGLTCSAGIAPNSMIAKICSDINKPNGQFRIANSKE 303
Query: 239 SML--YANLSIKKVRHLGG 255
++L +L I+KV +G
Sbjct: 304 AVLKFMRDLPIRKVSGIGA 322
>gi|332797906|ref|YP_004459406.1| DNA-directed DNA polymerase [Acidianus hospitalis W1]
gi|332695641|gb|AEE95108.1| DNA-directed DNA polymerase [Acidianus hospitalis W1]
Length = 354
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 137/313 (43%), Gaps = 69/313 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNT-WKGGGIIAV-NYEARHKGVTRHMRG 62
I+ +D D F+ QVE LNP L GKP+AV ++ +K G IA NYEAR G+ M
Sbjct: 2 IVLFVDFDYFFAQVEEVLNPELKGKPVAVCVFSGRFKDSGAIATSNYEARKLGIKSGMPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+AK+ P + + D+ K + + R + +LS++S+ +E ASIDEAY+D+TD
Sbjct: 62 PKAKEIAPNAIYLPI-----RKDLYK-QVSDRIMYGILSKYSSKIEIASIDEAYLDITDK 115
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
V + + A QL G DE
Sbjct: 116 VKD------YYEAYQL--------GKKIKDE----------------------------- 132
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
+ K + + GIA NKV AK++ ++KP IL V
Sbjct: 133 ----------------IYQKEKITVTIGIAPNKVFAKIIAEMNKPNGLGILKPEEVEGFI 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L I +V +G + ++ E + + ++ K ++L++ + AS+LY +A
Sbjct: 177 RSLPIDEVPGVGDSIFSKLRE-MGIKYLYDVLKVDFEKLKNEIGKSKASYLYSLANNTYA 235
Query: 303 EPVNARLVSKSIG 315
EPV + V K IG
Sbjct: 236 EPVKEK-VRKHIG 247
>gi|45383754|ref|NP_989514.1| DNA polymerase kappa [Gallus gallus]
gi|26983954|gb|AAM80560.1| DNA polymerase kappa [Gallus gallus]
Length = 867
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 169/364 (46%), Gaps = 44/364 (12%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
I IDMD FY VE + NP L KP+AV + + NY AR GV M G A
Sbjct: 104 IVHIDMDAFYAAVEMRDNPELKEKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 158
Query: 66 KQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 125
K+ CP + + VP + KYR +EV +L+E+ +DEAY+++T+ + E
Sbjct: 159 KKLCPHLTI--VP-----LNFEKYRKVSKEVKEILAEYDPHFMPMGLDEAYLNVTEHLEE 211
Query: 126 RMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG-----QVYSDTDTSLMENTE 180
R+ L+ + N ED G + G +++ D TS+M++
Sbjct: 212 RLNWPEDKRRYFLNTENTT----EKNKEDINIPGTVNIDGYSSSPELFED-GTSVMDDDS 266
Query: 181 DFQELAIAGVIV---------EEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
++ ++ V+V +EIR + KTQ SAGIA N +LAK+ +KP Q
Sbjct: 267 GQRDQSLKNVVVFGTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQC 326
Query: 232 -ILPQSSVSM-LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS-HFEEK 288
I P+ + +L I+KV + GK+ +++++ L T EL + + L S F E
Sbjct: 327 RISPERQAVLDFIKDLPIRKVPGI-GKVTEKMLKALGIVTCSEL--YQQRALLSLLFSE- 382
Query: 289 TASWLYY--IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCER 346
ASW + I+ G+ + KS+ + F + ++ +D QEL E+ +
Sbjct: 383 -ASWRSFLDISLGLGSTHLEKDGERKSMSTERTF---SEISKAEDQYSLCQELCRELAQD 438
Query: 347 LEDD 350
L+ +
Sbjct: 439 LQKE 442
>gi|208779376|ref|ZP_03246722.1| ImpB/MucB/SamB family protein [Francisella novicida FTG]
gi|208745176|gb|EDZ91474.1| ImpB/MucB/SamB family protein [Francisella novicida FTG]
Length = 349
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 130/312 (41%), Gaps = 71/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A I + + TD V
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAAS----------------TVIRDIFYSFTDKV 100
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDF 182
P + DE Y D TD +N+
Sbjct: 101 E-----------------------PLSLDE-------------AYLDVTDVKEYKNS--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 -----ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPKQVDSFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L +KK+ + GK+ E ++T+ T L+L++ SL L F K + LY ARGID+
Sbjct: 177 KDLPVKKLFGV-GKVSQEKLKTMNVETCLDLQQLSLATLLDKF-GKFGNNLYSYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KS+
Sbjct: 235 REVNPVRIRKSV 246
>gi|311105525|ref|YP_003978378.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
gi|310760214|gb|ADP15663.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
Length = 359
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 131/305 (42%), Gaps = 74/305 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKG--GGIIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + NP L GKP+ V W G + A +YEAR G+ M
Sbjct: 5 RKIVHVDMDAFYASVEQRDNPDLRGKPVVV----AWTGPRSVVCAASYEARRFGIHSAMS 60
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP ++ D ++YR+ R+V + + ++++E S+DEAY+D+T
Sbjct: 61 AARAERLCPH-------AIYVPPDFNRYRDVSRQVRQIFARHTDLIEPLSLDEAYLDVT- 112
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+ +G +A++++
Sbjct: 113 -----INKLGLPSATEVAQ----------------------------------------- 126
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
VI +IR +T SAG+A NK LAK+ +KP ++ + V
Sbjct: 127 --------VIRHQIR----EETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPAKVLAF 174
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L ++KV + GK+ +E L T+ +L S ++L+ H+ + LY +ARGID
Sbjct: 175 LEPLPVRKVPGV-GKVTQARLEQLGIHTVGDLATHSAQELE-HYFGRYGRRLYELARGID 232
Query: 302 HEPVN 306
V
Sbjct: 233 EREVQ 237
>gi|167627838|ref|YP_001678338.1| DNA polymerase IV [Francisella philomiragia subsp. philomiragia
ATCC 25017]
gi|226738231|sp|B0TZS5.1|DPO4_FRAP2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|167597839|gb|ABZ87837.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 350
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 130/313 (41%), Gaps = 71/313 (22%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 4 TRKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPT 62
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A Q CP + L D +KY+ A I + + TD
Sbjct: 63 AIAMQKCPNLILLN-------TDFAKYKATS----------------AVIRDIFYSFTDK 99
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTED 181
V P + DE Y D TD +N+
Sbjct: 100 VE-----------------------PLSLDE-------------AYLDVTDVKEYKNS-- 121
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 ------ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQVDSF 175
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
+L +KK+ + GK+ E ++ + T L+L++ SL L F K S LY ARGID
Sbjct: 176 VKDLPVKKLFGV-GKVSQEKLKNMNVETCLDLQQLSLATLVDKF-GKFGSSLYNYARGID 233
Query: 302 HEPVNARLVSKSI 314
+ VN + KS+
Sbjct: 234 NREVNPVRIRKSV 246
>gi|290988075|ref|XP_002676747.1| predicted protein [Naegleria gruberi]
gi|284090351|gb|EFC44003.1| predicted protein [Naegleria gruberi]
Length = 485
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 166/375 (44%), Gaps = 59/375 (15%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHK-GVTRHMRGD 63
+I +D+DCFY QVE NP PL + Q T I VNY R K + + R
Sbjct: 15 VIIHLDLDCFYAQVEEVENPKYRDLPLGIQQNQT-----ISTVNYCGRIKYKIPKMTRVK 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVI-AVLSEFSN------IVERASIDEAY 116
+A + CPE L +P A + YR R++ + E N ++E IDEAY
Sbjct: 70 QALEMCPE--LIVIP-----ARMEIYREESRKIFDECIGECVNSFHGDCVLEVCGIDEAY 122
Query: 117 IDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLM 176
I++TD V+ R+++ A++L G D D RK S
Sbjct: 123 INVTDEVNWRLEN-----ATEL--------GIDVKDHRGRKV---------------SKS 154
Query: 177 ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
N++D L I I EEIR V + + SAGIAH+K L+KL KP Q+++
Sbjct: 155 VNSQD-NHLNIGSQIAEEIRCNVFNSLGYTISAGIAHSKFLSKLASKKQKPNGQALIYSE 213
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHF-EEKTASWLYY 295
S + + + ++G ++ E Q ST+ +L + + F +K A +
Sbjct: 214 SFDEEINSQDVSIIPNVGYTTKQKLAELCQISTVKQLRAQTYVNIIKCFNSDKAAIKVLN 273
Query: 296 IARGIDHEPVNARLVS----KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDL 351
IA G E + R+VS KSIG F + T +D ++ + ++ R++ DL
Sbjct: 274 IANGKFDEEYD-RVVSKGPPKSIGSELTF---LTIQTYEDFEQKLRTITGDLFTRIQRDL 329
Query: 352 TLNKRR-AQLLTVSF 365
N R A LT+ +
Sbjct: 330 KRNSNRYATKLTLRY 344
>gi|418517734|ref|ZP_13083893.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|410705578|gb|EKQ64049.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 359
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 127/304 (41%), Gaps = 74/304 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARIFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D ++Y+ R+V + + +VE S+DEAY+D+T
Sbjct: 58 AVRAERLCPDAIF--VPP-----DFARYKAVSRQVREIFHRHTELVEPLSLDEAYLDVTH 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
K G M+ +V T + E T
Sbjct: 111 A----------------------------------KTG-MQLATEVAQLIRTQIREET-- 133
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q A AG+ A NK LAK+ KP Q ++ S V
Sbjct: 134 -QLTASAGI---------------------APNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L + L++LQ+HF S LY ARGID
Sbjct: 172 LLPLKVNRIPGV-GKVMDGKLAALGIVTVADLRQRPLEELQAHFGSFGQS-LYRRARGID 229
Query: 302 HEPV 305
PV
Sbjct: 230 ERPV 233
>gi|407979769|ref|ZP_11160577.1| DNA polymerase IV [Bacillus sp. HYC-10]
gi|407413594|gb|EKF35291.1| DNA polymerase IV [Bacillus sp. HYC-10]
Length = 418
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 71/118 (60%), Gaps = 7/118 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII IDM+ FY VE +PSL GKPLA+ + G ++ +YEAR GV M
Sbjct: 9 RIIFHIDMNSFYASVEMAYDPSLRGKPLAISGNAKERKGIVVTCSYEARALGVKPPMPLW 68
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP + + R P + +YR++ +E+ +L E+S++VE SIDE YIDLTD
Sbjct: 69 EAKRLCPGL-IVRTP------NFDRYRSSSQEMFTILREYSDLVEPVSIDEGYIDLTD 119
>gi|383451945|ref|YP_005358666.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
gi|380503567|emb|CCG54609.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
Length = 359
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 155/375 (41%), Gaps = 83/375 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG----GII-AVNYEARHKGVTR 58
R I IDMD FY VE NP L GKP+AV GG G++ A +YEAR GV
Sbjct: 7 RKIIHIDMDAFYASVEQLDNPELKGKPIAV-------GGSEVRGVVSAASYEARKYGVRS 59
Query: 59 HMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYID 118
M G +A + CPE+ R +Y+ +++ A+ +++
Sbjct: 60 AMSGVQAARLCPELTFVR-------PRFDRYKEISKQIRAI----------------FLE 96
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
TD+V P + DE + ++
Sbjct: 97 YTDLVE-----------------------PLSLDE--------------------AYLDV 113
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
TE+ + A +I +EIR + KT SAGI+ NK +AK+ +KP Q + V
Sbjct: 114 TENKKGNPSATLIAKEIRQKIFEKTGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDEV 173
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
L +KK + GK+ E + L T L+L+ +L+ L+ HF + Y ++R
Sbjct: 174 EAFIEVLDVKKFYGI-GKVTAEKMYQLGIYTGLDLKNKTLEYLEQHFGN-SGQAFYNLSR 231
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
GI + V KSIG + F L++ + ++ +A E+ R++ K
Sbjct: 232 GISYSQVKPNRQMKSIGAERTF--NENLSSEIYMEERLENIASEIERRIKKYKISGKTIT 289
Query: 359 QLLTVS-FTQETDGK 372
+ S FTQ+T K
Sbjct: 290 LKIKYSDFTQQTRSK 304
>gi|82751548|ref|YP_417289.1| DNA polymerase IV [Staphylococcus aureus RF122]
gi|123548109|sp|Q2YU32.1|DPO4_STAAB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|82657079|emb|CAI81516.1| DNA polymerase IV [Staphylococcus aureus RF122]
Length = 328
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 146/357 (40%), Gaps = 91/357 (25%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD F+ QVE + NP L GKP+ +V G + +YEAR GV M
Sbjct: 1 MTERRIIHIDMDYFFAQVEMRDNPKLKGKPV-IVGGKASSRGVVSTASYEARKYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP ++ YR +++++ +++ VE S+DEAY+D+T
Sbjct: 60 PMSQAHKLCPNGYFV-------TSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDIT 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
++V + AS+++ RK ++ENT
Sbjct: 113 ELVRP------DLPASKIAQYI-------------RK----------------DILENT- 136
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A AGV ++NK LAKL G++KP +++ +V
Sbjct: 137 --HLTASAGV---------------------SYNKFLAKLASGMNKPYGMTVIDYQNVHD 173
Query: 241 LYANLSI----------KKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+ L I KKV H G + E +F L +L K
Sbjct: 174 ILMTLDIGDFPGVGKASKKVMHDNG--------IFNGRDLYEKTEFELIRLFG----KRG 221
Query: 291 SWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
LY ARGIDH V + V KS+G + F T + +++ + EL+ + ERL
Sbjct: 222 RGLYNKARGIDHSEVKSSRVRKSVGTERTFA--TDVNDDEEILRKVWELSGKTAERL 276
>gi|367001979|ref|XP_003685724.1| hypothetical protein TPHA_0E01980 [Tetrapisispora phaffii CBS 4417]
gi|357524023|emb|CCE63290.1| hypothetical protein TPHA_0E01980 [Tetrapisispora phaffii CBS 4417]
Length = 641
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 130/565 (23%), Positives = 238/565 (42%), Gaps = 109/565 (19%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTR------- 58
+A ID++ F+ Q E P+ VQ+++ IIAV+Y AR + R
Sbjct: 26 LAHIDVNAFFAQAEQIRCGYTKDDPVVCVQWSS-----IIAVSYAARKYNIKRMENIMEA 80
Query: 59 ---------------HMRGDEAKQHC---------PEIELCRVPSVRGKADISKYRNAGR 94
+ +G++ Q+ P+ +L P + K ++ YR GR
Sbjct: 81 LKKSDNKIIPIHTAVYKKGEDFWQYHDGYGKWNKDPDKQLS--PE-KYKVSLNPYRREGR 137
Query: 95 EVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIA--------ASQLSNTFVVGF 146
++ ++ E+ ++VE AS DE ++DL+ +V +++ I + + + FV G
Sbjct: 138 KIFKLMKEWCDLVEIASSDEGFLDLSRLVLQKLLFDEDITNFNDDTTQSRTIQDMFVNG- 196
Query: 147 GPDNNDED-----ARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 201
D N ED + +++ G +Y+ + +E+ +D L + +I+ E+R + +
Sbjct: 197 --DYNLEDNLPPVPKYLKKLKYEGILYAGDEGDNIEDWDDLF-LCLGSIIMSELRNEIET 253
Query: 202 KTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY--ANLSIKKVRHLGGKLGD 259
+ S GIA K + KL KP Q I+ S + + N I LGG G
Sbjct: 254 TLGYTTSCGIARTKTVCKLASNFKKPNAQIIIRNSKLELFLDNENYEITSFWTLGGNSGK 313
Query: 260 EVVETLQCSTMLELEKF------SLKQLQSHFEEKT--------------------ASWL 293
++V+ LQ + L+ S L+++ + K AS L
Sbjct: 314 DIVKVLQLPSKGSLKYIRESWPTSSNDLKTYIDVKIKETIENGEPTDIDTTKTAILASKL 373
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
+ + RGI P+N R + KS+ K G +C + D W + E+ R+E+ L
Sbjct: 374 FDLCRGIWLTPINTRPLVKSMMSNKNLRGNSC-NSIVDCIQWFDIFSSELFGRVEE---L 429
Query: 354 NKRRAQLL---TVSFTQETDGKVNSCSRSIALA--SYKLQ--DIVEVSMQVINKTNSAPP 406
++ ++ TVS + T+ K + ++S AL K+Q DI + ++IN S
Sbjct: 430 SEEYNKIFIPKTVSISFITN-KSKNMTKSTALQCRGTKIQATDISIATSKLINAVYSQFD 488
Query: 407 ISDLTP--PLLFLGLSASKFSPLGSHPSIQQFFKPQDHPEPMTSEHSSLPEQSTN----- 459
+D T PL L S S F + + ++ F Q + S + E +++
Sbjct: 489 PNDSTSFFPLKQLSTSISNFEIIDNKKTVIDMFGKQIQKSTIIESSSKVIETNSDGNNQA 548
Query: 460 ------HDSKKRDKTLLNFNQQTPF 478
H++ + D ++FN++ F
Sbjct: 549 DENTKSHETFECDICKISFNERKDF 573
>gi|241889950|ref|ZP_04777248.1| DNA polymerase IV 1 [Gemella haemolysans ATCC 10379]
gi|241863572|gb|EER67956.1| DNA polymerase IV 1 [Gemella haemolysans ATCC 10379]
Length = 402
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 72/119 (60%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
S++IA IDM+CFY VE K NP L GKPLA+ + G I+ NYEAR G+ MR
Sbjct: 2 SKVIAHIDMNCFYASVEEKYNPELKGKPLAIAGEVKTRHGIIVTSNYEARELGIKTTMRV 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+A++ P I++ R D+ KY+ + + ++ E+++ +E S+DEAYIDL+D
Sbjct: 62 GDARKIYPNIKILR-------PDMPKYQQESKLIFDLVREYTDKIEIVSVDEAYIDLSD 113
>gi|240142517|ref|YP_002967028.1| DNA polymerase IV [Methylobacterium extorquens AM1]
gi|240012462|gb|ACS43687.1| DNA polymerase IV [Methylobacterium extorquens AM1]
Length = 408
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 144/343 (41%), Gaps = 72/343 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE + +PSL G+P+AV + + G + A +YEAR GV M
Sbjct: 57 RKIIHVDMDAFYASVEQRDDPSLRGRPIAV--GGSRERGVVAAASYEARKFGVRSAMASV 114
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AK+ CPE+ K YR + A+ +E + I+E S+DEAY+D+T
Sbjct: 115 TAKRKCPELVFV-------KPRFEVYREVSMAIRAIFAEHTPIIEPLSLDEAYLDVT--- 164
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E +K GF E ++ + T++ E
Sbjct: 165 -ENLK----------------GF---------------ETATEIAREIKTAIRER---LN 189
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
A AGV ++ A + S + + ++ K V L + I P + M A
Sbjct: 190 LTASAGVSYQKFLAKIASDYRKPDGLFVITPRMGPKFVLTLPVGRFHGIGPATEAKM--A 247
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L I +T +L+ SL LQ HF K+ ++ + IARG+DH
Sbjct: 248 RLGI--------------------ATGADLKSKSLAFLQEHF-GKSGAYFHGIARGVDHR 286
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCER 346
PV + KS+G F + LA +++ +Q + D+V R
Sbjct: 287 PVRPDRIRKSVGAENTF--ERDLAGIEEMREHLQPIVDKVWSR 327
>gi|115314775|ref|YP_763498.1| DNA polymerase IV [Francisella tularensis subsp. holarctica OSU18]
gi|122325207|sp|Q0BM23.1|DPO4_FRATO RecName: Full=DNA polymerase IV; Short=Pol IV
gi|115129674|gb|ABI82861.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
Length = 349
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 131/312 (41%), Gaps = 71/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A A I + + TD V
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAAS----------------AVIRDIFYYFTDKV 100
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDF 182
P + DE Y D TD +N+
Sbjct: 101 E-----------------------PLSLDE-------------AYLDVTDVKEYKNS--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 -----ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQVDSFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L +KK+ + GK+ E ++++ T L+L++ SL L F K S LY ARGID+
Sbjct: 177 KDLPVKKLFGV-GKVSQEKLKSMGVETCLDLQQLSLATLVDKF-GKFGSSLYNYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KS+
Sbjct: 235 REVNPVRIRKSV 246
>gi|311068988|ref|YP_003973911.1| DNA polymerase IV [Bacillus atrophaeus 1942]
gi|310869505|gb|ADP32980.1| DNA polymerase IV [Bacillus atrophaeus 1942]
Length = 414
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 7/125 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +PSL GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 GRIIFHIDMNSFYASVEMAYDPSLKGKPIAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK++CP EL +P + +YR++ RE+ +L +++ +VE SIDE Y+D+TD
Sbjct: 65 WEAKRNCP--ELIILP-----PNFDRYRSSSREMFQILRQYTELVEPVSIDEGYMDITDT 117
Query: 123 VHERM 127
+ M
Sbjct: 118 PYSFM 122
>gi|146338544|ref|YP_001203592.1| DNA polymerase IV [Bradyrhizobium sp. ORS 278]
gi|146191350|emb|CAL75355.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 278]
Length = 368
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 121/253 (47%), Gaps = 15/253 (5%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D + ++ T++ Q + +A I +IRA + ++T + SAGI++NK LAKL KP Q
Sbjct: 116 DEAYLDVTDNLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQY 175
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
++ + + L + + +G + L T L++ +L LQ HF K S
Sbjct: 176 VISPETGAAFVEGLPVGRFHGIGPATAAK-FNALGIHTGLDIRNQTLPFLQQHF-GKAGS 233
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDL 351
+ Y+I+RGIDH PV A + KSIG F T L + ++ +Q L D+V D
Sbjct: 234 YYYWISRGIDHRPVRANRIRKSIGAENTF--ATDLIEFEPMAAELQPLIDKVWRHC--DA 289
Query: 352 TLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLT 411
T N+ R L V F D V + SRS+A A ++ +S+ ++ P
Sbjct: 290 TGNRGRTVTLKVKF---ADFDVITRSRSVATAVSSRAELERLSLALLQAELPLP------ 340
Query: 412 PPLLFLGLSASKF 424
P+ LG+S S
Sbjct: 341 KPVRLLGVSLSSL 353
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + NP L G+P+AV + + G + A +YEAR GV M
Sbjct: 16 RKIIHIDMDAFYASVEQRDNPELRGRPVAV--GGSRERGVVAAASYEARKFGVRSAMPSM 73
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
AK+ CP++ K Y+ +++ A+ +E + I+E S+DEAY+D+TD
Sbjct: 74 TAKRLCPDLIFV-------KPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYLDVTD 124
>gi|419820368|ref|ZP_14343979.1| DNA polymerase IV [Bacillus atrophaeus C89]
gi|388475520|gb|EIM12232.1| DNA polymerase IV [Bacillus atrophaeus C89]
Length = 414
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 7/125 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +PSL GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 GRIIFHIDMNSFYASVEMAYDPSLKGKPIAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK++CP EL +P + +YR++ RE+ +L +++ +VE SIDE Y+D+TD
Sbjct: 65 WEAKRNCP--ELIILP-----PNFDRYRSSSREMFQILRQYTELVEPVSIDEGYMDITDT 117
Query: 123 VHERM 127
+ M
Sbjct: 118 PYSFM 122
>gi|88800716|ref|ZP_01116275.1| DNA polymerase IV [Reinekea blandensis MED297]
gi|88776580|gb|EAR07796.1| DNA polymerase IV [Reinekea sp. MED297]
Length = 365
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 135/316 (42%), Gaps = 78/316 (24%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV----NYEARHKGVTR 58
SR I ID DC+Y +E + P L G+P+AV G G +V NYEARH G+
Sbjct: 2 SRKIIHIDCDCYYAALEMRDFPELRGRPVAV------GGQGPRSVLSTCNYEARHYGLHS 55
Query: 59 HMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYID 118
M A CP + + P + D+ YR ++ + S +++ +E S+DEA++D
Sbjct: 56 AMPSRRALSLCPGLII--QPH---RFDV--YRAVSEQIRQIFSRYTDRIEPLSLDEAFLD 108
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
+TD W G + + L E+
Sbjct: 109 VTDST---------------------------------------WFG----GSASMLAEH 125
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
QE IV+E T SAGIA NK LAK+ KP + +V
Sbjct: 126 IR--QE------IVQE--------TGITVSAGIAPNKFLAKVASEWRKPNGLYSISPEAV 169
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
++L +KK+ +G K ++ E T ++ ++SL +L +F K+ WLY AR
Sbjct: 170 DEFLSSLPLKKINGVGSKFSQKLAEH-GLHTCGDVLRWSLPRLTQYF-GKSGLWLYQRAR 227
Query: 299 GIDHEPVNARLVSKSI 314
GIDH PV R KS+
Sbjct: 228 GIDHRPVGVRSDRKSL 243
>gi|398311332|ref|ZP_10514806.1| DNA polymerase IV [Bacillus mojavensis RO-H-1]
Length = 414
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 74/124 (59%), Gaps = 7/124 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR GV M
Sbjct: 5 GRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARAHGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK++CP +L +P + +YR++ R + ++L E++N+VE SIDE Y+D+TD
Sbjct: 65 WEAKRNCP--DLIVLP-----PNFDRYRSSSRAMFSILREYTNLVEPVSIDEGYMDMTDT 117
Query: 123 VHER 126
+ R
Sbjct: 118 PYSR 121
>gi|388852652|emb|CCF53815.1| related to DNA polymerase eta [Ustilago hordei]
Length = 874
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN 244
LA+ ++ +R VL + + SAGI NK L+KL KP Q+I+ SV+ +++
Sbjct: 417 LALGAELMNRVRQNVLDELGYTTSAGIGSNKTLSKLCSSWRKPNGQTIMRPCSVANFFSS 476
Query: 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEP 304
L +K+R LGGKLG+ + +T+ +L +L ++Q+ E+ A W+Y + RGID+
Sbjct: 477 LPFQKIRFLGGKLGNAMGVEWNSATVSDLWNVTLDEMQAKLGEE-ARWVYNVLRGIDYSE 535
Query: 305 VNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED 349
V R+ ++++ K + + ++ HW+ LA E+ RL +
Sbjct: 536 VRERVNNQTMLASKSV--RPAITKPEEAMHWLTILATELAIRLRE 578
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 24/143 (16%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R++A D+D Y Q E +L P+AV Q+ G+IAVNY AR GV+R
Sbjct: 120 RVVAHCDVDAAYAQFEASRLGLDAAVVPIAVQQWQ-----GLIAVNYPARDAGVSRFESI 174
Query: 63 DEAKQHCPEIELCRVPS-VRG---------------KADISKYRNAGREVIAVLSEFS-- 104
EA + CP++ L V + G K + YR +++A+ +
Sbjct: 175 PEALKKCPDLHLVHVATYAHGSNKANYHSDPKPETHKVSLDPYRRESNKILAIFKKTCPH 234
Query: 105 NIVERASIDEAYIDLTDVVHERM 127
VE+AS+DE+Y DLT V + M
Sbjct: 235 GAVEKASVDESYFDLTIEVRKLM 257
>gi|89889949|ref|ZP_01201460.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
gi|89518222|gb|EAS20878.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
Length = 361
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 103/388 (26%), Positives = 160/388 (41%), Gaps = 93/388 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG-----IIAVNYEARHKG 55
+ R I +DMD FY VE + P L GKP+AV GGG + A +YEAR G
Sbjct: 4 LDDRKIIHVDMDAFYASVEQRDFPELKGKPIAV-------GGGNNRGVVAAASYEARKYG 56
Query: 56 VTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEA 115
V M AK+ CP++ K KYR + I +
Sbjct: 57 VRSAMPSITAKKLCPDLIFV-------KHRFDKYREVS----------------SQIRDI 93
Query: 116 YIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSL 175
++D TD+V P + DE +
Sbjct: 94 FLDYTDLVE-----------------------PLSLDE--------------------AY 110
Query: 176 MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILP 234
++ TE+ A VI +IR + T SAGI+ NK +AK+ +KP Q +I P
Sbjct: 111 LDVTENKLNYPSATVIAYDIRRRIYETTGLTASAGISINKFVAKIASDYNKPNGQKTITP 170
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
+ + L L I+K H GK+ E + T L++ SL+ LQ HF + A + Y
Sbjct: 171 EEVIPFL-EELEIRKF-HGIGKVTAEKMYLQGIFTGAHLKERSLEFLQEHFGKSGAHY-Y 227
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSH--WIQELADEVCERLEDDLT 352
I RGI H PV + KS+G + F +++S +++E ++ E +E L
Sbjct: 228 NIVRGIHHSPVKPDRIRKSLGAERTFS--------ENISSEIFMKERLTQIAEEIEKRLA 279
Query: 353 LNKRRAQLLTVSFTQETDGKVNSCSRSI 380
N + +T+ + +D K + S+++
Sbjct: 280 KNDVAGKTVTLK-IKYSDFKTQTRSKTL 306
>gi|187931836|ref|YP_001891821.1| DNA polymerase IV [Francisella tularensis subsp. mediasiatica
FSC147]
gi|226738233|sp|B2SH34.1|DPO4_FRATM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|187712745|gb|ACD31042.1| DNA-damage inducible protein P [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 349
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 130/312 (41%), Gaps = 71/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A A I + + TD V
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAAS----------------AVIRDIFYSFTDKV 100
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDF 182
P + DE Y D TD +N+
Sbjct: 101 E-----------------------PLSLDE-------------AYLDVTDVKEYKNS--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 -----ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQVDSFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L +KK+ + GK+ E +++ T L+L++ SL L F K S LY ARGID+
Sbjct: 177 KDLPVKKLFGV-GKVSQEKLKSTGVETCLDLQQLSLATLVDKF-GKFGSSLYNYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KS+
Sbjct: 235 REVNPVRIRKSV 246
>gi|46108306|ref|XP_381211.1| hypothetical protein FG01035.1 [Gibberella zeae PH-1]
Length = 1143
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 132/317 (41%), Gaps = 59/317 (18%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+ R + +D D F+C V K P L KP AVV ++ G I + NY AR GV M
Sbjct: 357 SRRYVMHVDFDSFFCAVSIKKKPELINKP-AVVAHSIGSGSEIASCNYPAREFGVKNGMW 415
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A + CP++++ D Y A R + + +V+ SIDEA ID+T
Sbjct: 416 MKSALELCPDLKVL-------PYDFPAYEKASRLFYESMLDIGGVVQSVSIDEALIDITS 468
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
VV MKS G SQ G GPD+ EN
Sbjct: 469 VV---MKSAG----SQ-------GMGPDS--------------------------ENIA- 487
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
E +AG I +++R + S T H S GI N + AK+ KP Q L V +
Sbjct: 488 -LERDMAGKIAKDLREKIKSLTDCHVSVGIGANILQAKVALRKAKPAGQYQLEPGDVLDM 546
Query: 242 YANLSIKKV----RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+L ++++ R + GKL E + + +L + S ++L S KT L A
Sbjct: 547 IGDLKVEQLPGVARSIRGKL-----EDIGVVLVKDLREVSKERLVSILGPKTGEKLREYA 601
Query: 298 RGIDHEPVNARLVSKSI 314
GID V + KS+
Sbjct: 602 LGIDRTEVGEQPPRKSV 618
>gi|299148800|ref|ZP_07041862.1| ATP-NAD kinase [Bacteroides sp. 3_1_23]
gi|298513561|gb|EFI37448.1| ATP-NAD kinase [Bacteroides sp. 3_1_23]
Length = 353
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 139/308 (45%), Gaps = 74/308 (24%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCP 70
MD FY VE + NP L GKPLAV + G + A +YEAR GV M +AK+ CP
Sbjct: 1 MDAFYASVEQRDNPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAMASQKAKRLCP 58
Query: 71 EIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 130
+ L VP G+ D+ Y++ R+ I E + + TD++
Sbjct: 59 Q--LIFVP---GRMDV--YKSVSRQ----------------IHEIFHEYTDLIE------ 89
Query: 131 GHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGV 190
P + DE + ++ TE+ +++++A
Sbjct: 90 -----------------PLSLDE--------------------AFLDVTENKKDISLAVD 112
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSMLYANLSIKK 249
I +EI+ + + SAGI++NK LAK+ KP +I P+ ++ + A+L I+
Sbjct: 113 IAKEIKQKIREQLNLVASAGISYNKFLAKIASDYRKPDGLCTIHPEQALDFI-AHLPIES 171
Query: 250 VRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IARGIDHEPVNAR 308
+G + + L L+L K SL+ L +HF + A LYY +RGID PV A
Sbjct: 172 FWGVGPVTAKK-MHLLGIHNGLQLRKCSLEMLTAHFGKAGA--LYYECSRGIDERPVEAI 228
Query: 309 LVSKSIGC 316
+ KSIGC
Sbjct: 229 RIRKSIGC 236
>gi|443644950|ref|ZP_21128800.1| DNA polymerase IV [Pseudomonas syringae pv. syringae B64]
gi|443284967|gb|ELS43972.1| DNA polymerase IV [Pseudomonas syringae pv. syringae B64]
Length = 353
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 127/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPDLAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+ GH + S
Sbjct: 113 EA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID V
Sbjct: 230 GIDDRAVQ 237
>gi|386317724|ref|YP_006013888.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|422759836|ref|ZP_16813598.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322412671|gb|EFY03579.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|323128011|gb|ADX25308.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
Length = 365
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 152/357 (42%), Gaps = 74/357 (20%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NP+L GKP+ + + GG G+++ NYEAR G+
Sbjct: 10 TSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR+ G+ E +I +R Y DL
Sbjct: 70 MSSKEAYERCPQ-------AIFISGNYEKYRSVGQ-------EIRHIFKR------YTDL 109
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE + ++ T
Sbjct: 110 VE--------------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSV 238
++ + A I + I+ + ++ CSAG+++NK LAKL KP + +LPQ ++
Sbjct: 124 DNKLGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDAL 183
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
S L A+L I+K H GK E + + T +L + L HF + LY AR
Sbjct: 184 SFL-ADLPIEKF-HGVGKKSVEKLHEMGIYTGQDLLEVPEMTLIDHF-GRFGFDLYRKAR 240
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
GI H PV + KSIG + + L D+ I + A V L+D L K
Sbjct: 241 GISHSPVKPNRIRKSIGSERTYA--KLLYQEADIKAEISKNARRVAALLQDHKKLGK 295
>gi|262381220|ref|ZP_06074358.1| DNA damage-inducible protein [Bacteroides sp. 2_1_33B]
gi|262296397|gb|EEY84327.1| DNA damage-inducible protein [Bacteroides sp. 2_1_33B]
Length = 361
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 133/314 (42%), Gaps = 72/314 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 2 RKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAE--QRGVVAAASYEARKYGVRSAMASQ 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ V G+ D+ Y++ R+ I E + D TD++
Sbjct: 60 KAKRLCPDLIF-----VHGRMDV--YKSVSRQ----------------IHEIFHDYTDII 96
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ T++ +
Sbjct: 97 E-----------------------PLSLDE--------------------AFLDVTDNKR 113
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+++A I +EI+ + SAG+++NK LAK+ KP + S A
Sbjct: 114 GISLAVDIAKEIKKRIWDNLNLIASAGVSYNKFLAKIASDYRKPNGLCTIHPSQALDFIA 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IARGIDH 302
L I+ + G + + TL L+L + S + L F + A LYY ARGID+
Sbjct: 174 RLPIESFWGV-GPVTARKMHTLGIHNGLQLRECSGEMLTRQFGK--AGMLYYEFARGIDN 230
Query: 303 EPVNARLVSKSIGC 316
PV A + KS+GC
Sbjct: 231 RPVEAVRIRKSVGC 244
>gi|422016594|ref|ZP_16363176.1| DNA polymerase IV [Providencia burhodogranariea DSM 19968]
gi|414092629|gb|EKT54303.1| DNA polymerase IV [Providencia burhodogranariea DSM 19968]
Length = 351
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 153/361 (42%), Gaps = 99/361 (27%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHKGVT 57
R I IDMDCFY +E + +PSL P+AV GG G+I+ NYEAR GV
Sbjct: 2 RKIIHIDMDCFYAAIEMRDDPSLRNVPIAV-------GGSADRRGVISTANYEARRYGVH 54
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M A + CP +++ VP ++ Y+ + +LS +++++E S+DEAY+
Sbjct: 55 SAMSTAVALRLCPHLKV--VP-----GRMALYKETSLHIRKILSRYTDLIEPLSLDEAYL 107
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D++D H H +A+ ++ T
Sbjct: 108 DVSDSDHY------HGSATLIAQTI----------------------------------- 126
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
+ F EL Q SAGIA K LAK+ L+KP Q ++ +
Sbjct: 127 RQQIFDEL------------------QLTASAGIAPIKFLAKIASDLNKPNGQYVITPQN 168
Query: 238 VSMLYANLSIKKVRHLGG----KLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
++ +L +KK+ +G KL D +ET C+ + + + SL + F L
Sbjct: 169 MAEFVLSLPLKKIPGVGKVTAQKLLDMGLET--CADVQQYDVVSLIKSMGKF----GQIL 222
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQ--ELADEVCERLEDDL 351
+ GID P+N + KS+G + +D+ HW Q L DE+ E L+ L
Sbjct: 223 WERCHGIDERPINPDRLRKSVGVERTLA--------EDIHHWEQCLPLLDELYEELKVRL 274
Query: 352 T 352
T
Sbjct: 275 T 275
>gi|242371796|ref|ZP_04817370.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
gi|242350497|gb|EES42098.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
Length = 356
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 109/425 (25%), Positives = 176/425 (41%), Gaps = 88/425 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD F+ QVE + NP L GKP+ +V G + +YEAR GV M
Sbjct: 1 MAERRIIHIDMDYFFAQVEMRDNPKLKGKPV-IVGGKASNRGVVSTASYEARKYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + YR A ++++ + ++ IVE S+DEAY+D+T
Sbjct: 60 PMSQAHKLCPNGYYV-------TSRFGAYREASQQIMEIFRSYTEIVEPMSLDEAYLDIT 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+V M AS+++N R+ +Y T
Sbjct: 113 HLVRPDM------PASRIANYI-------------RR--------DIYEQT--------- 136
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
Q A AGV ++NK LAKL G++KP +++ +V
Sbjct: 137 --QLTASAGV---------------------SYNKFLAKLASGMNKPNGMTVIDYQNVHE 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL---EKFSLKQLQSHFEEKTASWLYYIA 297
+ +L I + GK +V+ T +L ++F L +L K LY A
Sbjct: 174 ILMHLDIGDFPGV-GKASKKVMHDNGIFTGQDLYNKDEFELIRLFG----KRGRGLYNKA 228
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRR 357
RGID+ V A V KS+G + F T + ++ + EL+ + ERL + L + +
Sbjct: 229 RGIDNNEVKATRVRKSVGTERTF--STDVNDDDEILRKVWELSGKTAERL-NKLQKSGKT 285
Query: 358 AQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFL 417
+ +F ET K S S+ + DI ++ + N+ + D P+ +
Sbjct: 286 VTVKIKTFQYETLSKQTSLRDSVQSET----DIYNIAYSLYNE------LKDPDVPIRLI 335
Query: 418 GLSAS 422
G++
Sbjct: 336 GVTVG 340
>gi|422616534|ref|ZP_16685240.1| DNA polymerase IV [Pseudomonas syringae pv. japonica str. M301072]
gi|330896118|gb|EGH28339.1| DNA polymerase IV [Pseudomonas syringae pv. japonica str. M301072]
Length = 353
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 127/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPDLAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+ GH + S
Sbjct: 113 EA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID V
Sbjct: 230 GIDDRAVQ 237
>gi|170723173|ref|YP_001750861.1| DNA polymerase IV [Pseudomonas putida W619]
gi|169761176|gb|ACA74492.1| DNA-directed DNA polymerase [Pseudomonas putida W619]
Length = 354
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 125/312 (40%), Gaps = 81/312 (25%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I ID DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHIDCDCFYAAIEMRDDPRLAGRPMAV-------GGSPDHRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ + +++ ++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLLIV-------KPRFEAYREASREIHGIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q ++ + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWFAGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
+ E+ IR V SAG+A NK LAK+ KP ++
Sbjct: 124 IAED----------------IRRRVARALHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
V A L + ++ H GK+ + + L T L++ +S L F L+
Sbjct: 168 PDQVEAFVAALPVARL-HGVGKVTADKLARLGIDTCLDMRDWSRLALVREFGS-FGERLW 225
Query: 295 YIARGIDHEPVN 306
+ARGID V+
Sbjct: 226 GLARGIDDRAVH 237
>gi|418465095|ref|ZP_13036032.1| DNA polymerase IV [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359756027|gb|EHK90186.1| DNA polymerase IV [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 344
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 130/311 (41%), Gaps = 81/311 (26%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG------IIAVNYEARHKGVTRHMRGDE 64
MDCFY +E + NPSL KP+AV GGG + NY AR G+ M +
Sbjct: 1 MDCFYASIEIRENPSLADKPVAV-------GGGAEQRGVLTTCNYAARKFGLHSAMPTAQ 53
Query: 65 AKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
A + CP + L V +IS YR +++ + +++I+E S+DEAY+D+TD
Sbjct: 54 ALKLCPNLILLPV-------NISLYREVSQQIHQIFQRYTSIIEPLSLDEAYLDVTDC-- 104
Query: 125 ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE 184
+ AG W+ Q
Sbjct: 105 ------------------------------DKCAGSATWIAQ------------------ 116
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN 244
+IR+A+ ++ SAG+A K LAK+ +KP Q ++ V+ A
Sbjct: 117 ---------DIRSAIFNELHLTASAGVAPLKFLAKIASDQNKPNGQFVIEPKEVADFVAA 167
Query: 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEP 304
L +KK+ + GK+ E + + +T +++K+ L + F K ++ + GID P
Sbjct: 168 LPLKKIPGV-GKVTSERLLQMGLATCADVQKYDRNALFNLF-GKMGQRIWAYSHGIDERP 225
Query: 305 VNARLVSKSIG 315
V KS+G
Sbjct: 226 VQPHRERKSVG 236
>gi|379796249|ref|YP_005326248.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356873240|emb|CCE59579.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 356
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 147/347 (42%), Gaps = 71/347 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD F+ QVE + NP L GKP+ +V G + +YEAR GV M
Sbjct: 1 MTERRIIHIDMDYFFAQVEMRDNPKLKGKPV-IVGGKASNRGVVSTASYEARKYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP ++ YR +++++ +++ VE S+DEAY+D+T
Sbjct: 60 PMSQAHKLCPNGYFV-------TSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDIT 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
++V + AS+++ RK ++E T
Sbjct: 113 ELVRP------DLPASKIAQYI-------------RK----------------DILEQT- 136
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
Q A AGV ++NK LAKL G++KP +++ +V
Sbjct: 137 --QLTASAGV---------------------SYNKFLAKLASGMNKPDGMTVIDYRNVHD 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ L I + GK +V+ T +L S +L H K LY ARGI
Sbjct: 174 ILMALDIGDFPGV-GKASKKVMHDHGIFTGKDLYNKSEFEL-IHLFGKRGRGLYNKARGI 231
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
DH V + V KS+G + F T + +++ + EL+ + ERL
Sbjct: 232 DHSEVKSTRVRKSVGTERTFA--TDVNDDEEILRKVWELSGKTAERL 276
>gi|378731621|gb|EHY58080.1| DNA polymerase iota subunit [Exophiala dermatitidis NIH/UT8656]
Length = 583
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 136/282 (48%), Gaps = 47/282 (16%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRI+ D DCFY V NP+L PLA+ Q ++ NYEAR +G+ +
Sbjct: 12 SRIVIHFDYDCFYASVVEHENPALKAVPLAIQQKQI-----VVTCNYEARRRGLHKLQLI 66
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVL--SEFSNIVERASIDEAYIDLT 120
EAK+ CPE + V G+ D++++RNA +E+ + L S +S ER DE ++D T
Sbjct: 67 SEAKRICPEAVI-----VLGE-DLTRFRNASKELYSFLQRSIWSGRAERLGFDEVWLDCT 120
Query: 121 DVVHERMKSIGHIAASQLSNTFV--------VGFGPDNNDEDARKAGVMEWLGQVYSDTD 172
D+VH +IG + + L+++F +GF DA A G Y
Sbjct: 121 DMVH---YNIGLLNPNDLAHSFFCLNREDPTIGF-----HYDASVA-----FGPTYPANP 167
Query: 173 TSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH----CSAGIAHNKVLAKLVCGLHKPQ 228
+ + E+ + L + V+ + + + ++H + GIA NK+L+KLV ++KP
Sbjct: 168 PNPELSEEEERHLRLRLVLGSHLAKHLRHELEYHKGYTATVGIATNKLLSKLVGNVNKPM 227
Query: 229 KQSIL--PQSSVSMLYANLS-------IKKVRHLGGKLGDEV 261
Q+ L P V + A ++ I K+ +G K +++
Sbjct: 228 SQTTLLPPYQPVGLSGATVTDFLDGHDIGKIPGIGFKSAEKI 269
>gi|296333460|ref|ZP_06875913.1| DNA polymerase IV [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305675034|ref|YP_003866706.1| DNA-damage lesion bypass DNA polymerase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149658|gb|EFG90554.1| DNA polymerase IV [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305413278|gb|ADM38397.1| DNA-damage lesion bypass DNA polymerase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 414
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 73/119 (61%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 SRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK++CP EL +P + +YR++ R + +L E++++VE SIDE Y+D+TD
Sbjct: 65 WEAKRNCP--ELIVLP-----PNFDRYRSSSRAMFNILREYTDLVEPVSIDEGYMDMTD 116
>gi|422628253|ref|ZP_16693462.1| DNA polymerase IV [Pseudomonas syringae pv. pisi str. 1704B]
gi|330936749|gb|EGH40919.1| DNA polymerase IV [Pseudomonas syringae pv. pisi str. 1704B]
Length = 353
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 127/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPDLAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+ GH + S
Sbjct: 113 EA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++I V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDICRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 230 GIDDRPVQ 237
>gi|452988001|gb|EME87756.1| hypothetical protein MYCFIDRAFT_148383 [Pseudocercospora fijiensis
CIRAD86]
Length = 611
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 40/282 (14%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RI+ D DCFY V NP+L P AV Q I+ NYEAR +G+ +
Sbjct: 12 GRIVIHFDYDCFYASVFEAKNPALKSLPFAVQQKQI-----IVTCNYEARRRGLHKLQLI 66
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLT 120
+A++ CP++ + DIS++R+A +E+ + FS N +ER DE ++D+T
Sbjct: 67 KDARRICPDV------IIELGEDISQFRDASKELYGFIKGFSWNNKIERLGFDEVWMDVT 120
Query: 121 DVVHERMKSIGHIAASQLSNTFV--------VGFGPDNNDEDARKAGVMEWLGQVYSDTD 172
D+V ++ + + L N+F VGFG D A A +++ +S
Sbjct: 121 DIVD---YNVALLNRNDLENSFFQLVQDDPTVGFGLDAT-VIAGHAFPKDYVSDPHS--- 173
Query: 173 TSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI 232
T++ E T L + + IR + + + C+ GI+ NK+L+KLV L+KP+ Q+
Sbjct: 174 TNVNELT---LRLRLGSHLALYIRHQLEQQKGYTCTVGISTNKLLSKLVGNLNKPKGQTT 230
Query: 233 L--PQSSVSMLYANL-------SIKKVRHLGGKLGDEVVETL 265
+ P ++V +N I KV +G K ++ E +
Sbjct: 231 VMPPLAAVDGHVSNAITFMDDHEIGKVPGIGFKFAQKLREFI 272
>gi|40062939|gb|AAR37809.1| DNA polymerase IV [uncultured marine bacterium 443]
Length = 356
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 131/317 (41%), Gaps = 69/317 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I ID DCFY +E + +PSL G P+AV + G + NY+AR GV M
Sbjct: 3 RKIIHIDADCFYAAIEMRDDPSLRGIPMAVGGSAD-RRGVLTTANYDARRYGVRSAMSTA 61
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A + CP + + VP +KYR+A R + + E+++++E S+DEAY+D+T+
Sbjct: 62 HAMRLCPHLTV--VPP-----QFNKYRDASRAMRTIFEEYTDMIEPLSLDEAYLDVTE-- 112
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
S H+ A++++
Sbjct: 113 ----SSGAHVTATRMA-------------------------------------------- 124
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+EIRA V + SAG++ NK +AK+ KP +++ V +
Sbjct: 125 ---------KEIRAKVEDELDITVSAGVSVNKFIAKVASDWQKPNGLTVVTPEQVDLFVK 175
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L ++K+ +G + + T ++ + L +L F K + L+ ARG D
Sbjct: 176 ALPVQKIPGVGAVTAQK-MHRYGLKTCSDIRDWELHELIRRF-GKFGAVLHERARGNDER 233
Query: 304 PVNARLVSKSIGCCKRF 320
PV + KSI F
Sbjct: 234 PVQSSRTRKSISVETTF 250
>gi|403070058|ref|ZP_10911390.1| DNA polymerase IV [Oceanobacillus sp. Ndiop]
Length = 417
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+CFY VE NP L GKPLA+ + G I+ +YEAR KGV M
Sbjct: 9 GRIIFHIDMNCFYASVEMAYNPKLKGKPLAIAGNPEERKGIIVTSSYEARAKGVKTTMPI 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+A++ CPE+ + R + +YR A +E+ +LSE + V+ SIDE Y+D+++
Sbjct: 69 WQARKLCPELIVMR-------PNFDRYRKASKEIFKMLSEVTPYVQPVSIDEGYMDISE 120
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 12/162 (7%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I E+++ +L++ CS GIA NK LAK+ + KP ++L + +S + LSI ++
Sbjct: 130 IAEKLQKRILNELDIPCSIGIAPNKFLAKMASDMKKPLGITVLRKREISNILWPLSISEM 189
Query: 251 RHLGGKLGDEVVETLQCSTMLEL---EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNA 307
+G K + ++T+ T+ +L + + LKQL E+ L A G D PV+
Sbjct: 190 YGVGEKTAKK-LKTINIETVGDLANKDVYELKQLLGINGER----LKNRANGNDTSPVDP 244
Query: 308 RLVS--KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
+ KSIG + P T +D+S + LAD V R+
Sbjct: 245 DAIYEFKSIGSSQTLPEDTT--DWKDISSLMNLLADNVERRM 284
>gi|384426413|ref|YP_005635770.1| ImpB-MucB-SamB family [Xanthomonas campestris pv. raphani 756C]
gi|341935513|gb|AEL05652.1| ImpB-MucB-SamB family [Xanthomonas campestris pv. raphani 756C]
Length = 359
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 127/305 (41%), Gaps = 74/305 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARTFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ +V D ++Y+ R+V + +++VE S+DEAY+D+T+
Sbjct: 58 AVRAERLCPD-------AVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTE 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
K G M+ ++ T + E T
Sbjct: 111 A----------------------------------KTG-MQLATEIAQLIRTQIREET-- 133
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q A AG+ A NK LAK+ KP Q ++ S V
Sbjct: 134 -QLTASAGI---------------------APNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L L++L +HF S LY ARGID
Sbjct: 172 LLPLPVNRIPGV-GKVMDGKLAALGIVTVSDLRLRPLEELHAHFGSFGQS-LYRRARGID 229
Query: 302 HEPVN 306
PV
Sbjct: 230 ERPVE 234
>gi|303257690|ref|ZP_07343702.1| ATP-NAD kinase [Burkholderiales bacterium 1_1_47]
gi|302859660|gb|EFL82739.1| ATP-NAD kinase [Burkholderiales bacterium 1_1_47]
Length = 366
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 163/394 (41%), Gaps = 80/394 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +D+D F+ VE + NPSL GK +AV N+ +G + + +YEAR GV M
Sbjct: 7 RRILHLDLDAFFASVEQRDNPSLQGKAIAV-GLNSARGV-VASASYEARKFGVRSAMPSS 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A + CP L VP G+ D +Y+ A EV + S ++N++E+ SIDEA++D+TDV
Sbjct: 65 VAARLCPN--LIFVP---GRMD--EYKKASAEVFEIFSRYTNLIEQVSIDEAFLDVTDV- 116
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
W Y+
Sbjct: 117 ---------------------------------------WRDYGYA-------------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+ IA +I E++R V SAG+++NK LAK+ KP ++ ++
Sbjct: 124 -MEIAKLIKEDVRREV----GLIISAGVSYNKFLAKIASDWRKPDGLCVIHPNAALKFID 178
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L +K + + G + + +E L T +L + L L F S+ Y AR ID
Sbjct: 179 RLPVKAIWGV-GPVTSQKMEALGIFTGKDLREKDLSFLVEQFGSSGLSY-YNFARCIDDR 236
Query: 304 PVNARLVSKSIGC-CKRFPGKTCLATRQDVSHWIQELADEVCERLEDD------LTLNKR 356
PV + K + + L +D + EL D + RL + LTL R
Sbjct: 237 PVRTERIRKQVSAEITLSKDEGNLNKLEDT---LSELTDYLMTRLRKNDFLGRSLTLKVR 293
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDI 390
T++ TQ ++ N S+ + A L+ I
Sbjct: 294 FHNFKTITRTQTSNSVFNEKSQILKTAESLLEKI 327
>gi|124007421|ref|ZP_01692127.1| DNA polymerase IV 2 [Microscilla marina ATCC 23134]
gi|123987077|gb|EAY26826.1| DNA polymerase IV 2 [Microscilla marina ATCC 23134]
Length = 325
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 143/340 (42%), Gaps = 72/340 (21%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMD FY VE + +P GKPLAV + + G + A +YEAR GV M A Q
Sbjct: 7 IDMDAFYASVEQRDHPQYQGKPLAVG--GSRERGVVAAASYEARKFGVYSAMSSRLAYQK 64
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP I VR + D+ Y+ +++ + E Y DL +
Sbjct: 65 CPHIIF-----VRPRFDV--YKEVSQQIREIFHE-------------YTDLVE------- 97
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
P + DE + ++ T++ + A
Sbjct: 98 -------------------PLSLDE--------------------AYLDVTKNKVGMPSA 118
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
+I EI+ + TQ SAGI+ NK LAK+ + KP +++ + A L IK
Sbjct: 119 TIIAREIKQKIFDATQLTASAGISVNKFLAKVASDMDKPNGLTLISPEEAADFVAKLPIK 178
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
K H GK+ + ++ L T +L ++ +L F K ++ + IA+GID VN
Sbjct: 179 KF-HGIGKVTAKKMQQLGIFTGADLRRWDKAKLVRQF-GKVGNYYFNIAQGIDQRSVNPH 236
Query: 309 LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
+ KSI F LA+ +++ + +LA+E+ R+E
Sbjct: 237 RIRKSISTENTFDHD--LASLEEMETALHQLAEELMRRME 274
>gi|320164937|gb|EFW41836.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 1079
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 135/302 (44%), Gaps = 32/302 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG---IIAVNYEARHKGVTRHM 60
+++A +DMDCF+ P L +P+ V ++ I + NY AR KGV M
Sbjct: 377 KVLAHVDMDCFFVSASLLSRPHLVEQPVVVCHSSSTDLASTSEIASCNYPARAKGVRNGM 436
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
R +A+Q C I C VP + YR+ + L ++ I++ S DEAYID+T
Sbjct: 437 RLGDARQLCDNIT-C-VPY-----EFEVYRDVMITLYKTLVSYTTIIQAVSCDEAYIDIT 489
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
++V + S + S+L P D A + + V+S + T
Sbjct: 490 ELVQREIVS----SQSEL---------PSGGDAQAAETDHSQ-PPPVHSASWTP-----S 530
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-PQSSVS 239
Q A +V IR + ++T SAGIAHN +LA++ KP Q L P +
Sbjct: 531 ATQIAASIAAVVSRIRQEIATRTGCPVSAGIAHNMLLARMATKRAKPSGQFYLAPHKGLE 590
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+ ++ + +G L + + L T EL + S +LQ+ F +K L+ ARG
Sbjct: 591 FMLTQ-AVGDLPGVGWSLARRLAQ-LDIETCSELARISKDKLQAEFGKKIGETLFNFARG 648
Query: 300 ID 301
+D
Sbjct: 649 VD 650
>gi|417926930|ref|ZP_12570318.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|340764804|gb|EGR87330.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
Length = 365
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 151/357 (42%), Gaps = 74/357 (20%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NP L GKP+ + + GG G+++ NYEAR G+
Sbjct: 10 TSRKIIHIDMDAFFAAVEERDNPVLKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR+ G+ E +I +R Y DL
Sbjct: 70 MSSKEAYERCPQ-------AIFISGNYEKYRSVGQ-------EIRHIFKR------YTDL 109
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE + ++ T
Sbjct: 110 VE--------------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSV 238
++ + A I + I+ + ++ CSAG+++NK LAKL KP + +LPQ ++
Sbjct: 124 DNKLGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDAL 183
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
S L A+L I+K H GK E + + T +L + L HF + LY AR
Sbjct: 184 SFL-ADLPIEKF-HGVGKKSVEKLHEMGIYTGQDLLEVPEMTLIDHF-GRFGFNLYRKAR 240
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
GI H PV + KSIG + + L D+ I + A V L+D L K
Sbjct: 241 GISHSPVKPNRIRKSIGSERTYA--KLLYQEADIKAEISKNARRVAALLQDHKKLGK 295
>gi|410461423|ref|ZP_11315074.1| DNA polymerase IV [Bacillus azotoformans LMG 9581]
gi|409925929|gb|EKN63129.1| DNA polymerase IV [Bacillus azotoformans LMG 9581]
Length = 420
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE NPSL GKPLAV + G I+ +YEAR KGV M
Sbjct: 9 GRVILHVDMNSFYASVEMAYNPSLKGKPLAVAGNPEERRGIIVTCSYEARAKGVKTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP EL +P D KYR A + +L+++S++++ SIDE Y+D+T+
Sbjct: 69 WEAKKLCP--ELIVLPP-----DFEKYRKASISMFQILAKYSSLIQPVSIDEGYMDITEC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
++ E K I ++L +G P+
Sbjct: 122 INLGSPIEIAKKIQAEILAELQLPCSIGIAPN 153
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 103/236 (43%), Gaps = 24/236 (10%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I ++I+A +L++ Q CS GIA NK LAK G+ KP +IL + V L ++ +
Sbjct: 130 IAKKIQAEILAELQLPCSIGIAPNKFLAKTASGMKKPLGITILRKRDVPSKLWPLKVENM 189
Query: 251 RHLGGKLGDEVVETLQCSTMLELEK---FSLKQLQSHFEEKTASWLYYIARGIDHEPVNA 307
+G + E + + +T+ EL K + LKQL L A G D PV+
Sbjct: 190 HGIGRRTA-EKLNKIGITTIGELAKANDYQLKQLLGI----NGIRLKARANGEDFRPVDP 244
Query: 308 RLVS--KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSF 365
VS KSIG T +++ + LA V R++ ++ Q+ +
Sbjct: 245 DAVSEFKSIGNSTTLKADTT--DEEEIKGVLNRLAGSVERRMQRHHVVS-WNIQITIRYY 301
Query: 366 TQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSA 421
+ET + SR + A + +DI + + K S PI LG++A
Sbjct: 302 NRETVTR----SRKLKYAIHAKEDIFNAAWYLFKKHWSEEPIR-------LLGITA 346
>gi|152968269|ref|YP_001364053.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
gi|151362786|gb|ABS05789.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
Length = 463
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 155/392 (39%), Gaps = 76/392 (19%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
+D+D F+ VE + PSL GKP+ V + +YEAR GV M A++
Sbjct: 23 LDLDAFFAAVEQRDKPSLRGKPVVVGGPGGRGV--VATASYEARVFGVGSAMPTARARRL 80
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP YR +V+ + S +VE S+DEA++D
Sbjct: 81 CPNAAYL-------AGRFEAYRAVSEQVMGLAHTLSPLVEPLSLDEAFVD---------- 123
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
L V+ D D +
Sbjct: 124 -----------------------------------LSAVHDDLDVERVTG---------- 138
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
I E RA V ++T S G+ +K++AK+ L KP ++P L A +S++
Sbjct: 139 --IAEGFRAEVRARTGLTVSVGVGASKLVAKIASDLRKPDALVVVPPQEQEALLAPMSVR 196
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
++ +G GD +V + T+ +L +L + S L ARGID PV
Sbjct: 197 RIPGVGAVTGDRLVRS-GLRTIGDLAAADEGELVRMLGKAHGSGLLAFARGIDPRPVVPE 255
Query: 309 LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED------DLTLNKRRAQLLT 362
+KS+ + F T L R D++ I+ +AD V RL +T+ RR T
Sbjct: 256 REAKSVSAEETF--STDLTDRADLTERIRRMADRVAVRLGKAGLSGRTITIKVRRYDFST 313
Query: 363 VSFTQETDGKVNSCSRSIALASYKLQDIVEVS 394
++ ++ T S ++ +AL + +L D V+V+
Sbjct: 314 LNRSR-TLPHATSSAKEVALHAGELLDGVDVA 344
>gi|417752573|ref|ZP_12400765.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|333771630|gb|EGL48550.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
Length = 365
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 151/357 (42%), Gaps = 74/357 (20%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NP L GKP+ + + GG G+++ NYEAR G+
Sbjct: 10 TSRKIIHIDMDAFFAAVEERDNPVLKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR+ G+ E +I +R Y DL
Sbjct: 70 MSSKEAYERCPQ-------AIFISGNYEKYRSVGQ-------EIRHIFKR------YTDL 109
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE + ++ T
Sbjct: 110 VE--------------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSV 238
++ + A I + I+ + ++ CSAG+++NK LAKL KP + +LPQ ++
Sbjct: 124 DNKLGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDAL 183
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
S L A+L I+K H GK E + + T +L + L HF + LY AR
Sbjct: 184 SFL-ADLPIEKF-HGVGKKSVEKLHEMGIYTGQDLLEVPEMTLIDHF-GRFGFDLYRKAR 240
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
GI H PV + KSIG + + L D+ I + A V L+D L K
Sbjct: 241 GISHSPVKPNRIRKSIGSERTYA--KLLYQEADIKAEISKNARRVAALLQDHKKLGK 295
>gi|408402364|ref|YP_006860328.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|407968593|dbj|BAM61831.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
Length = 365
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 151/357 (42%), Gaps = 74/357 (20%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NP L GKP+ + + GG G+++ NYEAR G+
Sbjct: 10 TSRKIIHIDMDAFFAAVEERDNPVLKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR+ G+ E +I +R Y DL
Sbjct: 70 MSSKEAYERCPQ-------AIFISGNYEKYRSVGQ-------EIRHIFKR------YTDL 109
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE + ++ T
Sbjct: 110 VE--------------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSV 238
++ + A I + I+ + ++ CSAG+++NK LAKL KP + +LPQ ++
Sbjct: 124 DNKLGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDAL 183
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
S L A+L I+K H GK E + + T +L + L HF + LY AR
Sbjct: 184 SFL-ADLPIEKF-HGVGKKSVEKLHEMGIYTGQDLLEVPEMTLIDHF-GRFGFDLYRKAR 240
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
GI H PV + KSIG + + L D+ I + A V L+D L K
Sbjct: 241 GISHSPVKPNRIRKSIGSERTYA--KLLYQEADIKAEISKNARRVAALLQDHKKLGK 295
>gi|410923427|ref|XP_003975183.1| PREDICTED: DNA polymerase kappa-like [Takifugu rubripes]
Length = 756
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 159/371 (42%), Gaps = 43/371 (11%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R+I +DMD FY VE + P L KP+AV + + NY AR GV M G
Sbjct: 98 TRVIVHVDMDAFYAAVEMRDCPELKDKPMAVGSMSM-----LSTSNYHARKYGVRAAMPG 152
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP + + VP+ + KYR E+ + +++ S+DEAY+D T+
Sbjct: 153 FIAKKLCPNLVI--VPT-----NFDKYRAVSSEIREIFADYDPNFMPMSLDEAYLDFTEH 205
Query: 123 VHERMKSIGHI-----AASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
+ +R + Q + V P D+ + E G + TS+ E
Sbjct: 206 LEKRQSWPDSLRDENNELPQETTPDVTDLSPVLFDDSPSSSLCCEDAGSAFEIFGTSVEE 265
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS- 236
V E+R + KT SAGIA N +LAK+ +KP Q LP +
Sbjct: 266 -------------AVREMRFRIEQKTLLTASAGIAPNMMLAKVCSDKNKPNGQYRLPSTR 312
Query: 237 -SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL-EKFSLKQLQSHFEEKTASWLY 294
+V NL ++KV + GK+ ++++ L S+ L +K +L L F E
Sbjct: 313 EAVMEFVCNLPVRKVSGI-GKVSEKLLNALGISSCSHLGQKMALLSLL--FSETAWHHFL 369
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
++ G+ + KS+ + F K A + +S L E+CE L +DL
Sbjct: 370 QVSLGLGSAFIPRHEERKSMSTERTF--KEMSAAEEQLS-----LCRELCEDLANDLKKE 422
Query: 355 KRRAQLLTVSF 365
+ + +T+
Sbjct: 423 GLKGKTVTLKL 433
>gi|410495674|ref|YP_006905520.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
gi|410440834|emb|CCI63462.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
Length = 365
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 151/357 (42%), Gaps = 74/357 (20%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NP L GKP+ + + GG G+++ NYEAR G+
Sbjct: 10 TSRKIIHIDMDAFFAAVEERDNPVLKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR+ G+ E +I +R Y DL
Sbjct: 70 MSSKEAYERCPQ-------AIFISGNYEKYRSVGQ-------EIRHIFKR------YTDL 109
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE + ++ T
Sbjct: 110 VE--------------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSV 238
++ + A I + I+ + ++ CSAG+++NK LAKL KP + +LPQ ++
Sbjct: 124 DNKLGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDAL 183
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
S L A+L I+K H GK E + + T +L + L HF + LY AR
Sbjct: 184 SFL-ADLPIEKF-HGVGKKSVEKLHEMGIYTGQDLLEVPEMTLIDHF-GRFGFDLYRKAR 240
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
GI H PV + KSIG + + L D+ I + A V L+D L K
Sbjct: 241 GISHSPVKPNRIRKSIGSERTYA--KLLYQEADIKAEISKNARRVVALLQDHKKLGK 295
>gi|375012202|ref|YP_004989190.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
gi|359348126|gb|AEV32545.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
Length = 361
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 133/318 (41%), Gaps = 72/318 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE + NP L GKP+AV + + G + A +YEAR G+ M
Sbjct: 8 RKIIHVDMDAFYASVEQRDNPELMGKPVAVG--GSRERGVVAAASYEARKYGIRSAMASS 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A + CP I K KY+ ++ I E + + TD+V
Sbjct: 66 IAYRKCPHIIFV-------KPHFEKYKEVSKQ----------------IREIFFEYTDLV 102
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ TE+ +
Sbjct: 103 E-----------------------PLSLDE--------------------AYLDVTENKK 119
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSMLY 242
+A A I +EIR + +TQ SAGI+ NK +AK+ ++KP Q +I+P + L
Sbjct: 120 GIATATRIAKEIRQRIWEETQLSASAGISINKFVAKVASDINKPNGQKTIMPDDVIPFL- 178
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
NL IKK +G K E ++ L +L+++ L L F K+ + Y I RG+
Sbjct: 179 ENLPIKKFYGIGEKTA-EKMKKLGIHFGRDLKQWDLPLLVREF-GKSGTHYYNIVRGLQK 236
Query: 303 EPVNARLVSKSIGCCKRF 320
V + KSIG + F
Sbjct: 237 STVKPDRIRKSIGAERTF 254
>gi|417842070|ref|ZP_12488165.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
gi|341947850|gb|EGT74491.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
Length = 355
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 142/340 (41%), Gaps = 71/340 (20%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMDCFY +E + NP+L GKP+A V ++ + G + NYEAR G+ M +A +
Sbjct: 10 IDMDCFYASIEIRENPNLQGKPVA-VGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIKK 68
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP + L VP +++ Y+ ++ + +++I+E S+DEAY+D+T
Sbjct: 69 CPNLIL--VP-----VNMTLYKQVSAQIHQIFHRYTDIIEPLSLDEAYLDVTHC------ 115
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
+ +G W+ Q
Sbjct: 116 --------------------------QKCSGSATWIAQ---------------------- 127
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
EIR A+ + SAG+A K LAK+ ++KP Q ++ + V LS+
Sbjct: 128 -----EIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNEVEEFIKTLSLN 182
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
K+ + GK+ + + + T +++ F L + F K ++ + GID V A
Sbjct: 183 KIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQF-GKAGKRIWDFSHGIDDREVQAH 240
Query: 309 LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
KS+G + + T + + L DE+ RLE
Sbjct: 241 RERKSVGVEQTLIEN--IHTVEQALALLNNLYDELIRRLE 278
>gi|389571750|ref|ZP_10161839.1| DNA polymerase IV [Bacillus sp. M 2-6]
gi|388428644|gb|EIL86440.1| DNA polymerase IV [Bacillus sp. M 2-6]
Length = 418
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +PSL GKPLA+ + G ++ +YEAR GV M
Sbjct: 8 GRIIFHIDMNSFYASVEMAYDPSLRGKPLAISGNAKERKGIVVTCSYEARALGVKPPMPL 67
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP + + R P + +YR++ +E+ +L E+S++VE SIDE YIDLT+
Sbjct: 68 WEAKRLCPGL-IVRTP------NFDRYRSSSQEMFTILREYSDLVEPVSIDEGYIDLTN 119
>gi|71003135|ref|XP_756248.1| hypothetical protein UM00101.1 [Ustilago maydis 521]
gi|46096253|gb|EAK81486.1| hypothetical protein UM00101.1 [Ustilago maydis 521]
Length = 865
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 89/160 (55%), Gaps = 3/160 (1%)
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN 244
LA+ ++ +R VL + + SAGI NK L+KL KP Q+I+ SV+ +++
Sbjct: 406 LALGAELMNRVRQNVLDELGYTTSAGIGSNKTLSKLCSSWRKPNGQTIMRPCSVANFFSS 465
Query: 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEP 304
L +K+R LGGKLG+ + +T+ +L L ++Q+ F E+ A W+Y + RGID+
Sbjct: 466 LPFQKIRFLGGKLGNAMGAEWNSATVSDLWGVGLDEMQAKFGEE-ARWVYNVLRGIDYSE 524
Query: 305 VNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVC 344
V R+ ++++ K + + ++ +HW+ L+ E+
Sbjct: 525 VRERVNNQTMLASKSV--RPAITKPEEATHWLDILSTELA 562
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 65/139 (46%), Gaps = 30/139 (21%)
Query: 4 RIIALIDMDCFYCQVEC-KLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R++A D+D Y Q E +L P+AV Q+ G+IAVNY AR GV+R
Sbjct: 114 RVVAHCDVDAAYAQFEASRLGLDATVVPIAVQQWQ-----GLIAVNYPARDAGVSRFESI 168
Query: 63 DEAKQHCPEIELCRVPS-VRG---------------KADISKYRNAGREVIAVLSEFS-- 104
EA + CP++ L V + G K + YR RE +L+ F
Sbjct: 169 PEALKKCPDLHLVHVATYAHGSNKPDYHPDPKPETHKVSLDHYR---RESTKILTIFKRT 225
Query: 105 ---NIVERASIDEAYIDLT 120
VE+ASIDE+Y DLT
Sbjct: 226 CPHGAVEKASIDESYFDLT 244
>gi|258546266|ref|ZP_05706500.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
gi|258518488|gb|EEV87347.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
Length = 353
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 131/320 (40%), Gaps = 69/320 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M+ R I IDMD FY VE + +P GKPL +V + G + A +YEAR G+ M
Sbjct: 1 MSPRKIIHIDMDAFYASVEQRDHPEWRGKPL-IVARAAEERGVVAAASYEARRYGIHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A+Q CP++ L + YR ++ A++ ++ VE
Sbjct: 60 STHRAQQRCPQLILA-------PPRFAVYRAVSLQIRALMLAITDAVE------------ 100
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
P + DE Y D S EN
Sbjct: 101 ---------------------------PLSLDE-------------AYLDVSDSPHENGS 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I E + A +L+ T SAG+++NK+LAK+ L+KP +++ + +
Sbjct: 121 -------ATRIAERLSAEILAATGLTASAGVSYNKMLAKIASDLNKPNGIAVITPAQGAD 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
A+L+I++ H GK + L T +L + S + L+ F K + Y +ARGI
Sbjct: 174 FVASLAIERF-HGIGKATAAHMHALGIQTGADLRRLSRETLRHEF-GKHGDFYYDMARGI 231
Query: 301 DHEPVNARLVSKSIGCCKRF 320
D PV A KSIG F
Sbjct: 232 DLRPVEAARERKSIGSETTF 251
>gi|301309676|ref|ZP_07215615.1| ATP-NAD kinase [Bacteroides sp. 20_3]
gi|300831250|gb|EFK61881.1| ATP-NAD kinase [Bacteroides sp. 20_3]
Length = 361
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 132/314 (42%), Gaps = 72/314 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + NP L GKPLAV + G + A +YEAR GV M
Sbjct: 2 RKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAE--QRGVVAAASYEARKYGVRSAMASQ 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP + V G+ D+ Y++ R+ I E + D TD++
Sbjct: 60 KAKRLCPNLIF-----VHGRMDV--YKSVSRQ----------------IHEIFHDYTDII 96
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ T++ +
Sbjct: 97 E-----------------------PLSLDE--------------------AFLDVTDNKR 113
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+++A I +EI+ + SAG+++NK LAK+ KP + S A
Sbjct: 114 GISLAVDIAKEIKKRIWDNLNLITSAGVSYNKFLAKIASDYRKPNGLCTIHPSQALDFIA 173
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IARGIDH 302
L I+ + G + + TL L+L + S + L F + A LYY ARGID+
Sbjct: 174 RLPIESFWGV-GPVTARKMHTLGIHNGLQLRECSGEMLTRQFGK--AGILYYEFARGIDN 230
Query: 303 EPVNARLVSKSIGC 316
PV A + KS+GC
Sbjct: 231 RPVEAVRIRKSVGC 244
>gi|167517591|ref|XP_001743136.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778235|gb|EDQ91850.1| predicted protein [Monosiga brevicollis MX1]
Length = 265
Score = 93.6 bits (231), Expect = 5e-16, Method: Composition-based stats.
Identities = 75/241 (31%), Positives = 114/241 (47%), Gaps = 35/241 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I D+DCFY QV P L KPL V Q + VNY AR +GV + R
Sbjct: 3 RVILHFDLDCFYAQVHMVQEPELRLKPLGVQQKTIFA-----TVNYVARARGVPKMARIS 57
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSE-FSNI-VERASIDEAYIDLTD 121
EA++ CP+I +R D++ YR A + A L E F + VER +DE ++D T
Sbjct: 58 EAQRICPDI------VIRNGEDLTDYREASEHIFAFLQEQFPHCPVERLGLDEFFVDATT 111
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
H + S G + + F + P+ W G + +L +
Sbjct: 112 PAHA-LCSDGFWSPTP---HFHLTASPN-------------WCGHPAAHAAANLAQ---- 150
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSM 240
+Q L + + R + +K + CSAGIA NK+ AK+ LHKP QS +LP+++ ++
Sbjct: 151 YQALRAGAQLTDWARKELKAKFGYTCSAGIAVNKLQAKMAGELHKPDDQSCLLPRAAQAV 210
Query: 241 L 241
+
Sbjct: 211 I 211
>gi|417845577|ref|ZP_12491603.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
gi|341954646|gb|EGT81119.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
Length = 355
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 143/340 (42%), Gaps = 71/340 (20%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMDCFY +E + NP+L GKP+A V ++ + G + NYEAR G+ M +A +
Sbjct: 10 IDMDCFYASIEIRENPNLQGKPVA-VGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIKK 68
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP + L VP +++ Y+ ++ + +++I+E S+DEAY+D+T
Sbjct: 69 CPNLIL--VP-----VNMALYKQVSAQIHQIFQRYTDIIEPLSLDEAYLDVTHC------ 115
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
+ +G W+ Q
Sbjct: 116 --------------------------QKCSGSATWIAQ---------------------- 127
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
EIR A+ ++ SAG+A K LAK+ ++KP Q ++ + V LS+
Sbjct: 128 -----EIRQAIFNELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNEVEEFIKTLSLN 182
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
K+ + GK+ + + + T +++ F L + F K ++ + GID V A
Sbjct: 183 KIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQF-GKAGKRIWDFSHGIDDREVQAH 240
Query: 309 LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
KS+G + + T + S + L E+ RLE
Sbjct: 241 RERKSVGVEQTLIEN--IHTIEQASALLNNLYQELIRRLE 278
>gi|443631674|ref|ZP_21115854.1| DNA polymerase IV [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443347789|gb|ELS61846.1| DNA polymerase IV [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 414
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 72/119 (60%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 GRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK++CP EL +P + +YR++ R + +L E++++VE SIDE Y+D+TD
Sbjct: 65 WEAKRNCP--ELIVLP-----PNFDRYRSSSRAMFNILREYTDLVEPVSIDEGYMDMTD 116
>gi|221214796|ref|ZP_03587765.1| DNA polymerase IV [Burkholderia multivorans CGD1]
gi|221165335|gb|EED97812.1| DNA polymerase IV [Burkholderia multivorans CGD1]
Length = 388
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 133/317 (41%), Gaps = 81/317 (25%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHKGVT 57
R I D DCFY VE + +PSL +PLAV GG G+IA NYEAR GV
Sbjct: 33 RKIIHCDCDCFYASVEMRDDPSLRNRPLAV-------GGRPDQRGVIATCNYEARRYGVH 85
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M A + CP++ + +PS + KYR A R+++A+ +++ VE S+DEAY+
Sbjct: 86 SAMSSALAMRKCPDLLI--LPSA-----MDKYRTASRQIMAIYRDYTADVEPLSLDEAYL 138
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D++ ER + + A ++ + V E +G S
Sbjct: 139 DVSR--SERCQGSATLIAREI------------------RQRVYETVGVTVS-------- 170
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
AGV A NK +AK+ +KP ++
Sbjct: 171 ----------AGV---------------------APNKFIAKIASDWNKPDGLFVVRPHE 199
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V A L ++K+ H GK+ ++ L T +L +SL L F LY +A
Sbjct: 200 VDAFVAALPVRKL-HGVGKVTATRLDRLGIQTCAQLRTWSLIDLHREF-GAFGRRLYELA 257
Query: 298 RGIDHEPVNARLVSKSI 314
RGID PV A KSI
Sbjct: 258 RGIDERPVQADQERKSI 274
>gi|429863216|gb|ELA37723.1| DNA polymerase [Colletotrichum gloeosporioides Nara gc5]
Length = 558
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 119/257 (46%), Gaps = 24/257 (9%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII D DCFY V +P L PL V Q N + NY AR +GV + M
Sbjct: 15 RIILHFDYDCFYASVLENRDPKLKALPLGVKQKNI-----LATCNYVARRRGVKKLMFIT 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLTD 121
+AK+ CP++ + + G+ D++ +R+ + + A L FS VER DE ++D+TD
Sbjct: 70 DAKKICPDLVI-----IEGE-DLTPFRDMSKTLFAFLRGFSWCGKVERLGFDEVFMDVTD 123
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEW---LGQVYSDTDTSLMEN 178
++ M + ++ LS +F + +D K V + G VY + +
Sbjct: 124 IIQYNMFCLNRVS---LSESFF-----HLSRQDPEKGFVCDLTSVAGCVYGPVPETGDLD 175
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
+ L +A + +R + F S G++ NK+L KL +HKP+ Q+ L +
Sbjct: 176 DPKYVRLLLASHLAYYLRLKLEEDFGFTASVGVSTNKLLTKLAGSVHKPRNQTTLMSLTD 235
Query: 239 SMLYANLSIKKVRHLGG 255
S++ + VR + G
Sbjct: 236 SVIEDFMDAHSVRKVPG 252
>gi|416050698|ref|ZP_11577074.1| DNA polymerase IV [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347993888|gb|EGY35217.1| DNA polymerase IV [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 344
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 81/311 (26%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG------IIAVNYEARHKGVTRHMRGDE 64
MDCFY +E + NPSL KP+AV GGG + NY AR G+ M +
Sbjct: 1 MDCFYASIEIRENPSLADKPVAV-------GGGAEQRGVLTTCNYAARKFGLHSAMPTAQ 53
Query: 65 AKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
A + CP + L V +IS YR +++ + +++I+E S+DEAY+D+TD
Sbjct: 54 ALKLCPNLILLLV-------NISLYREVSQQIHQIFQRYTSIIEPLSLDEAYLDVTDC-- 104
Query: 125 ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE 184
+ AG W+ Q
Sbjct: 105 ------------------------------DKCAGSATWIAQ------------------ 116
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN 244
+IR+A+ ++ SAG+A K LAK+ +KP Q ++ V+ A
Sbjct: 117 ---------DIRSAIFNELHLTASAGVAPLKFLAKIASDQNKPNGQFVIEPKEVADFVAA 167
Query: 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEP 304
L +KK+ + GK+ E + + +T ++K+ L + F K ++ + GID P
Sbjct: 168 LPLKKIPGV-GKVTSEKLLQMGLATCANVQKYDRNALFNLF-GKMGQRIWAYSHGIDERP 225
Query: 305 VNARLVSKSIG 315
V KS+G
Sbjct: 226 VQPHRERKSVG 236
>gi|297847332|ref|XP_002891547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337389|gb|EFH67806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 636
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 115/433 (26%), Positives = 181/433 (41%), Gaps = 107/433 (24%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV---NYEARHKGVTRH 59
SRI +DMD FY VE +PSL GKP+AV GG+ + NYEAR GV
Sbjct: 102 SRIWLHVDMDAFYAAVETLSDPSLKGKPMAV--------GGLSMISTANYEARKFGVRAA 153
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M G A++ CP +L VP D +KY + V + S+DEAY+D+
Sbjct: 154 MPGFIARKLCP--DLIFVP-----VDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYLDI 206
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
T+V ER S G IA E+ R + VYS+T +
Sbjct: 207 TEVCRERGLSGGEIA------------------EELRSS--------VYSETGLT----- 235
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP--QSS 237
CSAG+A N++LAK+ ++KP Q +L +S+
Sbjct: 236 ---------------------------CSAGVAANRLLAKVCSDINKPNGQFVLQNDRST 268
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL-EKFSLKQLQSHFEEKTASWLYYI 296
V ++L ++K+ +G + + L T E+ +K L L + F + +A + +
Sbjct: 269 VMTFVSSLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGPL--LYALFSQSSADFFLSV 326
Query: 297 ARGI---DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
G+ D V +R KSI + F A D +LA E+ E L D+
Sbjct: 327 GLGLGGTDTPQVRSR---KSISSERTF------AATGDERLLYSKLA-EIAEMLSHDMKK 376
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQ--DIVEVSMQVINKTNSAPPISDLT 411
A+ LT+ + SR+++L Y DI++ + +++ ++L
Sbjct: 377 EGLTARTLTLKLKTAS---FEIRSRAVSLQRYTCSSDDILKHATKLLK--------AELP 425
Query: 412 PPLLFLGLSASKF 424
+ +GL S+F
Sbjct: 426 VSVRLIGLRMSQF 438
>gi|403384071|ref|ZP_10926128.1| DNA polymerase IV [Kurthia sp. JC30]
Length = 408
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 7/118 (5%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
I+ IDM+CFY VE LNP+L GKP+AV + G ++ +YEAR +GV MR E
Sbjct: 3 ILFHIDMNCFYASVEQALNPALRGKPVAVGGDPKERRGIVVTCSYEARARGVYTTMRVTE 62
Query: 65 AKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A + CPE+ + K + +YR A + + +L ++++VE SIDE Y+D+TD+
Sbjct: 63 ALKICPELIVL-------KPNFERYRKASKAMFDMLRSYTHLVEPVSIDEGYMDVTDI 113
>gi|449278668|gb|EMC86459.1| DNA polymerase kappa, partial [Columba livia]
Length = 864
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 144/310 (46%), Gaps = 37/310 (11%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
S I IDMD FY VE + NP L KP+AV + + NY AR GV M G
Sbjct: 99 SNTIVHIDMDAFYAAVEMRDNPELKEKPIAVGSMSM-----LSTSNYHARRFGVRAAMPG 153
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP + + VP + KY +EV +LSE+ +DEAY++LT+
Sbjct: 154 FIAKKLCPHLTI--VP-----LNFEKYGKVSKEVREILSEYDPNFMPMGLDEAYLNLTEH 206
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ----VYSDTDTSLM-- 176
+ ER + + F + + +D + + G V + +T LM
Sbjct: 207 LEERQ----NWPEDRRRFFFNTESTTEKDKDDVNMSAKSDKDGYSSSPVLFEDNTPLMDD 262
Query: 177 --ENTEDFQELAI-----AGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQK 229
E +E ++ A +V+EIR + KTQ SAGIA N +LAK+ +KP
Sbjct: 263 DPEQRHQSEENSVVFGNSAEEVVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDCNKPNG 322
Query: 230 QSILP--QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS-HFE 286
Q +P + +V +L I+KV + GK+ +++++ L T EL + + L S F
Sbjct: 323 QYKIPPERQAVLDFLKDLPIRKVPGI-GKVTEKMLKALGIVTCSEL--YQQRALLSLLFS 379
Query: 287 EKTASWLYYI 296
E ASW ++
Sbjct: 380 E--ASWRNFL 387
>gi|212542149|ref|XP_002151229.1| DNA polymerase iota, putative [Talaromyces marneffei ATCC 18224]
gi|210066136|gb|EEA20229.1| DNA polymerase iota, putative [Talaromyces marneffei ATCC 18224]
Length = 586
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 35/249 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I D DCFY V NP+L PLAV Q ++ NYEAR +G+ +
Sbjct: 10 RVIVHFDYDCFYASVLEAENPTLKALPLAVQQKQI-----VVTCNYEARRRGLRKLQLIK 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNI--VERASIDEAYIDLTD 121
EAKQ CPE+ + + G+ D++K+R+ + + L F+ ER DE ++D+TD
Sbjct: 65 EAKQICPEVVI-----IVGE-DLTKFRDVSKSLYGFLKGFTWTQKAERLGFDEVFLDVTD 118
Query: 122 VVHERMKSIGHIAASQLSNTFV--------VGFGPDNNDEDA---RKAGVMEWLGQVYSD 170
++ M + L+N+F VGF D K+ G+V D
Sbjct: 119 MIDYNMSLLNQ---HDLANSFFCLDKRDPTVGFEFDATGYYGPTYPKSADNPLSGKVADD 175
Query: 171 TDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ 230
+ +L Q L + + +R+ + ++ + + GI+ +K+LAKLV +HKP Q
Sbjct: 176 SQHNLA------QRLILGSHLAYYMRSRLDNERGYTATVGISTSKLLAKLVGNVHKPNNQ 229
Query: 231 SIL--PQSS 237
+ L P SS
Sbjct: 230 TTLIPPYSS 238
>gi|255034132|ref|YP_003084753.1| DNA-directed DNA polymerase [Dyadobacter fermentans DSM 18053]
gi|254946888|gb|ACT91588.1| DNA-directed DNA polymerase [Dyadobacter fermentans DSM 18053]
Length = 372
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 112/422 (26%), Positives = 169/422 (40%), Gaps = 84/422 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIA-VNYEARHKGVTRHMRG 62
R I IDMD FY VE + P GKPLAV T G G++A +YEAR GV M
Sbjct: 11 RKIIHIDMDAFYASVEQRDFPEYRGKPLAVGGSPT--GRGVVATASYEARKFGVRSAMPS 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+A Q CP+I Y++ R + + S +++++E S+DEAY+D+T+
Sbjct: 69 RQAIQLCPQIIFVH-------PRFEVYKSVSRSIREIFSRYTDLIEPLSLDEAYLDVTE- 120
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
++M G G ME Q+ E+
Sbjct: 121 --DKM-----------------GIG-----------SAMEIAKQIKQAIQ-------EEL 143
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A AGV V + A K+ +HKP + + S +
Sbjct: 144 HLTASAGVSVNKFVA---------------------KIASDIHKPNGLTFIGPSKIERFM 182
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L ++K H GK+ + ++ +Q T +L+K + ++L +HF KT + Y I RGID
Sbjct: 183 DQLPVEKF-HGVGKVTADKMKGMQLFTGSDLKKLTEEELVNHF-GKTGHFYYRIVRGIDD 240
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLT 362
V +KS+G F L T +++ + + V RLE K R L
Sbjct: 241 REVQTHRETKSLGAEDTF--TYDLTTPDEMNKELDRIGVTVANRLETKKL--KGRTVTLK 296
Query: 363 VSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSAS 422
V F+ T N S A L I + + Q++ K + L LG+S S
Sbjct: 297 VKFSDFTQITRN---HSFAHPVGDLDTITDTAKQLLEKLDLEGKAVRL------LGISLS 347
Query: 423 KF 424
F
Sbjct: 348 NF 349
>gi|167586723|ref|ZP_02379111.1| DNA-directed DNA polymerase [Burkholderia ubonensis Bu]
Length = 359
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 134/317 (42%), Gaps = 81/317 (25%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHKGVT 57
R I D DCFY VE + +PSL G+PLAV GG G+IA NYEAR GV
Sbjct: 2 RKIIHCDCDCFYASVEMRDDPSLRGRPLAV-------GGRPDQRGVIATCNYEARRYGVH 54
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M A + CP++ + +PS + KYR A R+++A+ +++ VE S+DEAY+
Sbjct: 55 SAMSSALAMRKCPDLLI--LPSA-----MDKYRAASRQIMAIYRDYTADVEPLSLDEAYL 107
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D++ ER + + A ++ V E +G S
Sbjct: 108 DVSG--SERCQGSATLIAREIRRR------------------VFETVGVTVS-------- 139
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
AGV A NK +AK+ +KP ++
Sbjct: 140 ----------AGV---------------------APNKFIAKIASDWNKPDGLFVVRPHE 168
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V A L ++K+ H GK+ ++ L T +L ++SL L F LY ++
Sbjct: 169 VDAFVAALPVRKL-HGVGKVTAARLDRLGIQTCAQLREWSLIDLHREF-GAFGRRLYELS 226
Query: 298 RGIDHEPVNARLVSKSI 314
RGID PV A KS+
Sbjct: 227 RGIDERPVQADQERKSV 243
>gi|402217789|gb|EJT97868.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 650
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 109/236 (46%), Gaps = 16/236 (6%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+RI+ D+D Y E NPSL GKP+ V Q G + +YEAR GV +
Sbjct: 5 ARIVLAFDLDNMYVACERLRNPSLVGKPVGVQQ-----KGLLATASYEARALGVDKLCSL 59
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSN--IVERASIDEAYIDLT 120
EAK+ CP + L V G+ D++ YR R V ++ VE+ +DE + D+T
Sbjct: 60 WEAKKRCPSLIL-----VNGE-DLTLYRYYSRRVFLLVRSVLGDCPVEKLGMDELFCDVT 113
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGV---MEWLGQVYSDTDTSLME 177
++V E ++ I+ F + D + E G D ++ +
Sbjct: 114 NLVKEHLQETRDISPDPRGRWFALARAESGALTDYKGFWYNPSSECPGHTIPQYDPTVSD 173
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
N + + A + IR VL++ SAGIA++K +AKLV +HKP +Q+ L
Sbjct: 174 NATLPESILAASHLANHIRHLVLTQIGLGSSAGIAYDKTIAKLVGNMHKPHQQTTL 229
>gi|270296191|ref|ZP_06202391.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270273595|gb|EFA19457.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 368
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 133/316 (42%), Gaps = 70/316 (22%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD FY VE + NP+L GKP+AV + G + A +YEAR GV M
Sbjct: 1 MTGRKIIHIDMDAFYASVEQRDNPALRGKPIAVGHAE--ERGVVAAASYEARRFGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AKQ CP+ L +P G+ ++ Y++ R+ I E + + T
Sbjct: 59 SSLKAKQLCPQ--LIFIP---GRMEV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
DV+ P + DE + ++ TE
Sbjct: 96 DVIE-----------------------PISLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+ + +A I +EI+ V + SAGI++NK LAK+ KP + +
Sbjct: 113 NKPGIPLAVDIAKEIKRKVRERLNLVASAGISYNKFLAKIASDYRKPDGLCTIHPAQALD 172
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
A L I+ + G + + + TL +L SL+ L F K + Y ARGI
Sbjct: 173 FVARLPIESFWGV-GPVTAKKMHTLGIHNGEQLRMQSLEMLTREF-GKVGTVYYDFARGI 230
Query: 301 DHEPVNARLVSKSIGC 316
D PV A + KS+GC
Sbjct: 231 DTRPVEAVRIRKSVGC 246
>gi|189424136|ref|YP_001951313.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
gi|189420395|gb|ACD94793.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
Length = 409
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 144/350 (41%), Gaps = 83/350 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG----IIAVNYEARHKGVTRH 59
R I IDM+ F+ VE + NP L GKP+AVV G G I +YEAR GV
Sbjct: 3 RAILHIDMNAFFASVEQQANPDLQGKPVAVV------GSGHRTVITTASYEARRFGVKTG 56
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M E ++ CPE+ + D KY +A R++I ++ +++ +VE SIDEA++D+
Sbjct: 57 MAIWEGRRACPELIII-------VGDNKKYTHASRQIIGMMRQYTPLVEVFSIDEAFLDV 109
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
T H R FG KA + + LG
Sbjct: 110 T---HSRAL-----------------FGSAETIAHQLKARIRQELG-------------- 135
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
CS GIA NK+LAKL + KP +++ +
Sbjct: 136 -------------------------LTCSVGIAPNKLLAKLASDMQKPDGLTVIAPDQIK 170
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+ +++I + +G KL + + L + +L +F + L F L + +G
Sbjct: 171 AVLESVTIGDLCGIGKKL-ERRLNLLGIKSCGQLGRFPEELLSRKF-GIIGPRLREMGQG 228
Query: 300 IDHEPVNARLVS---KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCER 346
ID PV A KS+G + TRQD+ ++ +LA+ V R
Sbjct: 229 IDDSPVLATEGDEQVKSVGHSMTL--HKDIDTRQDILRYLLQLAEMVGRR 276
>gi|417842649|ref|ZP_12488730.1| DNA polymerase IV [Haemophilus haemolyticus M21127]
gi|341951208|gb|EGT77785.1| DNA polymerase IV [Haemophilus haemolyticus M21127]
Length = 355
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 129/307 (42%), Gaps = 69/307 (22%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMDCFY +E + NP+L GKP+A V ++ + G + NYEAR G+ M +A +
Sbjct: 10 IDMDCFYASIEIRENPNLLGKPVA-VGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIKK 68
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP + L V +++ Y+ ++ + +++I+E S+DEAY+D+T
Sbjct: 69 CPNLILVPV-------NMALYKQVSLQIHQIFQRYTDIIEPLSLDEAYLDVTHC------ 115
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
+ +G W+ Q
Sbjct: 116 --------------------------QKCSGSATWIAQ---------------------- 127
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
EIR A+ + SAG+A K LAK+ ++KP Q ++ + VS LS+
Sbjct: 128 -----EIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNEVSEFIKTLSLN 182
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
K+ + GK+ + + + T ++ F L + F K ++ + GID V A
Sbjct: 183 KIPGV-GKVTSQRLLDMGLETCANIQNFDQIVLLNQF-GKAGKRIWDFSHGIDDREVQAH 240
Query: 309 LVSKSIG 315
KS+G
Sbjct: 241 RERKSVG 247
>gi|115469640|ref|NP_001058419.1| Os06g0691000 [Oryza sativa Japonica Group]
gi|52076718|dbj|BAD45631.1| putative deoxycytidyl transferase [Oryza sativa Japonica Group]
gi|53793286|dbj|BAD54508.1| putative deoxycytidyl transferase [Oryza sativa Japonica Group]
gi|113596459|dbj|BAF20333.1| Os06g0691000 [Oryza sativa Japonica Group]
Length = 1125
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 135/346 (39%), Gaps = 76/346 (21%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG-IIAVNYEARHKGVTRHMRGDE 64
I IDMDCF+ V + P LH KP+AV + KG I + NY AR+ G+ M E
Sbjct: 379 IIHIDMDCFFVSVVIRNKPELHDKPVAVCHSDNPKGTAEISSANYPARNYGIKAGMFVRE 438
Query: 65 AKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
AK CP + + VP D Y + +L ++ + V+ S D
Sbjct: 439 AKARCPHLMI--VP-----YDFDAYGEVADQFYGILHKYCSKVQALSCD----------- 480
Query: 125 ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE 184
+ + D L +N E+
Sbjct: 481 -----------------------------------------EAFLDMTECLHDNPEE--- 496
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN 244
+ ++IR + T+ SAGI+ N ++A+L KP Q + V
Sbjct: 497 ------VTQKIRNEIFGTTKCSASAGISGNMLIARLATRSAKPNGQCFISSEKVDGYLNT 550
Query: 245 LSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
LSIK + +G + D++ E C + + K SL + F +K L+ RGIDH
Sbjct: 551 LSIKALPGIGHTVSDKLKSKEVEYCGQLRNIPKESLHK---DFGKKIGDMLWNYCRGIDH 607
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
V A +KS+G + + +D +++ L+ EVC RLE
Sbjct: 608 SVVEAVQETKSVGAEVNWGVR--FNDNKDAENFLVNLSKEVCLRLE 651
>gi|255717821|ref|XP_002555191.1| KLTH0G03586p [Lachancea thermotolerans]
gi|238936575|emb|CAR24754.1| KLTH0G03586p [Lachancea thermotolerans CBS 6340]
Length = 621
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 119/523 (22%), Positives = 201/523 (38%), Gaps = 93/523 (17%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRH------ 59
+A ID++ F+ QVE P+ VQ+N+ IIAV+Y A+ G++R
Sbjct: 26 VAHIDVNAFFAQVEQIRCQYSRDDPVVCVQWNS-----IIAVSYAAKKFGISRMDTVFDA 80
Query: 60 ------------------------------MRGDEAKQHCPEIELCRVPSVRGKADISKY 89
DE+K+ PE+ K + Y
Sbjct: 81 FKKCEGLMPVHTAVFKKGEDFWQYHDDCGSWHTDESKKLSPELH---------KVSLDPY 131
Query: 90 RNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLS-NTFVVGFGP 148
R R+++ + SE+ ++VE+AS+DE ++DL V S+ I SQ + F
Sbjct: 132 RRESRKILKIFSEWCDLVEKASVDEVFLDLGRNVF----SLLLIDESQKGFESIRTQFRE 187
Query: 149 DNNDEDARKAGV-----MEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 203
+ D D GV + Y+ +L ++ +D + I ++IR +
Sbjct: 188 GSYDLDDYLPGVPKDVEINIEAGDYNPQKRTLYDDWDDVL-FCLGSTITKKIRDQIEEVL 246
Query: 204 QFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN--LSIKKVRHLGGKLGDEV 261
+ S GIA K +AKL KP Q+I+ ++ N L + +GG G EV
Sbjct: 247 GYTTSCGIARTKTVAKLASNFKKPNAQTIVRNCNIEDFLDNESLELTSFWSMGGIFGKEV 306
Query: 262 VETLQCSTMLELEKF------SLKQLQSHFEEK---------------------TASWLY 294
+ L + L+ S +L +H EK A ++
Sbjct: 307 TQLLDLPSERSLKYIRDSWPVSSWELGAHMREKIRKLNSGKEKLYSLDDAQVQQMADKIF 366
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ARG P N R V KS+ K PG +C D W++ + ++ R+++
Sbjct: 367 QLARGDFKMPFNPRPVIKSMMSNKNLPGNSC-KHYVDCLAWLEVFSGDLIGRIKELEQEY 425
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIAL--ASYKLQDIVEVSMQVINKTNSAPPISDLTP 412
+R T++ +T R+ K +D++E ++I + S SD
Sbjct: 426 ERIIVPKTITVMTKTRNYERHTRRTTLTVGGQVKSKDLMEFGTKLIRELESLYGGSDTYY 485
Query: 413 PLLFLGLSASKFSPLGSHPSIQQFFKPQDHPEPMTSEHSSLPE 455
PL + +S S F + +I F Q + E + PE
Sbjct: 486 PLTGIAMSLSNFEIHETGRTIVDMFGRQTQVVRKSGEDFTKPE 528
>gi|307180994|gb|EFN68768.1| DNA polymerase iota [Camponotus floridanus]
Length = 549
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 141/306 (46%), Gaps = 30/306 (9%)
Query: 23 NPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRG 82
+P GKPL V Q + ++ NY AR G+ + M EA + CPE+ L V G
Sbjct: 4 HPEYEGKPLGVQQKSI-----VVTSNYLAREYGIKKCMSVQEALRLCPELVL-----VNG 53
Query: 83 KADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTF 142
+ D++ YR +V +L +F+ +VER D+ ++++ KS+ SQ + F
Sbjct: 54 E-DLTSYRLYSTKVFEILQQFTPLVERLGFDDYFLEI--------KSVEKQLKSQNDSEF 104
Query: 143 VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSK 202
+ DE+ +++ +++ +D + L I I IR + +
Sbjct: 105 --DMNNLHTDEELKESD-----SKIFGPSDEEC--PCDCHTRLMIGAKIAAGIRNRIYEE 155
Query: 203 TQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSMLYANLSIKKVRHLGGKLGDEV 261
CSAGIAHNK+LAKL L+KP +Q+ + P S +L A SI K+ +G K E+
Sbjct: 156 LHLTCSAGIAHNKLLAKLAGSLNKPNQQTLVFPCSGPMLLSAIGSISKIPGVGQKTM-EL 214
Query: 262 VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFP 321
+ + T+ ++ K L+ L+ A L A GID V +SIG F
Sbjct: 215 LLSNNIKTVDDVRKIPLENLELKIGVDLARRLKDNAEGIDETVVKPSGKKQSIGLEDGFK 274
Query: 322 GKTCLA 327
+ +A
Sbjct: 275 SVSLVA 280
>gi|421476121|ref|ZP_15924034.1| DNA polymerase IV [Burkholderia multivorans CF2]
gi|400228962|gb|EJO58847.1| DNA polymerase IV [Burkholderia multivorans CF2]
Length = 388
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 133/317 (41%), Gaps = 81/317 (25%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHKGVT 57
R I D DCFY VE + +PSL +PLAV GG G+IA NYEAR GV
Sbjct: 33 RKIIHCDCDCFYASVEMRDDPSLRNRPLAV-------GGRPDQRGVIATCNYEARRYGVH 85
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M A + CP++ + +PS + KYR A R+++A+ +++ VE S+DEAY+
Sbjct: 86 SAMSSALAMRKCPDLLI--LPSA-----MDKYRTASRQIMAIYRDYTADVEPLSLDEAYL 138
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D++ ER + + A ++ + V E +G S
Sbjct: 139 DVSR--SERCQGSATLIAREI------------------RQRVYETVGVTVS-------- 170
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
AGV A NK +AK+ +KP ++
Sbjct: 171 ----------AGV---------------------APNKFIAKIASDWNKPDGLFVVRPHE 199
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V A L ++K+ H GK+ ++ L T +L +SL L F LY +A
Sbjct: 200 VDAFVAALPVRKL-HGVGKVTATRLDRLGIQTCAQLRTWSLIDLHREF-GAFGRRLYELA 257
Query: 298 RGIDHEPVNARLVSKSI 314
RGID PV A KS+
Sbjct: 258 RGIDERPVQADQERKSV 274
>gi|79362498|ref|NP_175420.3| DNA polymerase kappa subunit [Arabidopsis thaliana]
gi|46394839|gb|AAS91582.1| DNA-directed polymerase kappa [Arabidopsis thaliana]
gi|332194382|gb|AEE32503.1| DNA polymerase kappa subunit [Arabidopsis thaliana]
Length = 671
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 180/431 (41%), Gaps = 103/431 (23%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV---NYEARHKGVTRH 59
SRI +DMD FY VE +PS+ GKP+AV GG+ + NYEAR GV
Sbjct: 102 SRIWLHVDMDAFYAAVETLSDPSIKGKPMAV--------GGLSMISTANYEARKFGVRAA 153
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M G A++ CP +L VP D +KY + V + S+DEAY+D+
Sbjct: 154 MPGFIARKLCP--DLIFVP-----VDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYLDI 206
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
T+V ER S G IA E+ R + VYS+T +
Sbjct: 207 TEVCRERGLSGGEIA------------------EELRSS--------VYSETGLT----- 235
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
CSAG+A N++LAK+ ++KP Q +L Q+ S
Sbjct: 236 ---------------------------CSAGVAANRLLAKVCSDINKPNGQFVL-QNDRS 267
Query: 240 MLYANLSIKKVRHLG--GKLGDEVV-ETLQCSTMLEL-EKFSLKQLQSHFEEKTASWLYY 295
+ +S VR +G GK+ + ++ + L T E+ +K SL L + F + +A +
Sbjct: 268 TVMTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSL--LYALFSQSSADFFLS 325
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
+ G+ KSI + F A D +L DE+ E L D+
Sbjct: 326 VGLGLGGTNTPQVRSRKSISSERTF------AATGDERLLYSKL-DELAEMLSHDMKKEG 378
Query: 356 RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQ--DIVEVSMQVINKTNSAPPISDLTPP 413
A+ LT+ + SR+++L Y DI++ + +++ ++L
Sbjct: 379 LTARTLTLKLKTAS---FEIRSRAVSLQRYTCSSDDILKHATKLLK--------AELPVS 427
Query: 414 LLFLGLSASKF 424
+ +GL S+F
Sbjct: 428 VRLIGLRMSQF 438
>gi|161524303|ref|YP_001579315.1| DNA polymerase IV [Burkholderia multivorans ATCC 17616]
gi|160341732|gb|ABX14818.1| DNA-directed DNA polymerase [Burkholderia multivorans ATCC 17616]
Length = 429
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 133/317 (41%), Gaps = 81/317 (25%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHKGVT 57
R I D DCFY VE + +PSL +PLAV GG G+IA NYEAR GV
Sbjct: 74 RKIIHCDCDCFYASVEMRDDPSLRNRPLAV-------GGRPDQRGVIATCNYEARRYGVH 126
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M A + CP++ + +PS + KYR A R+++A+ +++ VE S+DEAY+
Sbjct: 127 SAMSSALAMRKCPDLLI--LPSA-----MDKYRTASRQIMAIYRDYTADVEPLSLDEAYL 179
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D++ ER + + A ++ + V E +G S
Sbjct: 180 DVSR--SERCQGSATLIAREI------------------RQRVYETVGVTVS-------- 211
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
AGV A NK +AK+ +KP ++
Sbjct: 212 ----------AGV---------------------APNKFIAKIASDWNKPDGLFVVRPHE 240
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V A L ++K+ H GK+ ++ L T +L +SL L F LY +A
Sbjct: 241 VDAFVAALPVRKL-HGVGKVTATRLDRLGIQTCAQLRTWSLIDLHREF-GAFGRRLYELA 298
Query: 298 RGIDHEPVNARLVSKSI 314
RGID PV A KS+
Sbjct: 299 RGIDERPVQADQERKSV 315
>gi|342904369|ref|ZP_08726170.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
gi|341953609|gb|EGT80113.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
Length = 355
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 142/340 (41%), Gaps = 71/340 (20%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMDCFY +E + NP+L GKP+A V ++ + G + NYEAR G+ M +A +
Sbjct: 10 IDMDCFYASIEIRENPNLQGKPVA-VGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIKK 68
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP + L VP +++ Y+ ++ + +++I+E S+DEAY+D+T
Sbjct: 69 CPNLIL--VP-----VNMALYKQVSVQIHQIFQRYTDIIEPLSLDEAYLDVTHC------ 115
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
+ +G W+ Q
Sbjct: 116 --------------------------QKCSGSATWIAQ---------------------- 127
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
EIR A+ + SAG+A K LAK+ ++KP Q ++ + VS L +
Sbjct: 128 -----EIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNEVSEFIKTLPLN 182
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
K+ + GK+ + + + T +++ F L + F K ++ + GID V A
Sbjct: 183 KIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQF-GKAGKRIWDFSHGIDDREVQAH 240
Query: 309 LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
KS+G + + T + S + L E+ RLE
Sbjct: 241 RERKSVGVEQTLIEN--IHTIEQASALLNNLYQELIRRLE 278
>gi|189350941|ref|YP_001946569.1| DNA polymerase IV [Burkholderia multivorans ATCC 17616]
gi|189334963|dbj|BAG44033.1| DNA polymerase IV [Burkholderia multivorans ATCC 17616]
Length = 388
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 133/317 (41%), Gaps = 81/317 (25%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHKGVT 57
R I D DCFY VE + +PSL +PLAV GG G+IA NYEAR GV
Sbjct: 33 RKIIHCDCDCFYASVEMRDDPSLRNRPLAV-------GGRPDQRGVIATCNYEARRYGVH 85
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M A + CP++ + +PS + KYR A R+++A+ +++ VE S+DEAY+
Sbjct: 86 SAMSSALAMRKCPDLLI--LPSA-----MDKYRTASRQIMAIYRDYTADVEPLSLDEAYL 138
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D++ ER + + A ++ + V E +G S
Sbjct: 139 DVSR--SERCQGSATLIAREI------------------RQRVYETVGVTVS-------- 170
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
AGV A NK +AK+ +KP ++
Sbjct: 171 ----------AGV---------------------APNKFIAKIASDWNKPDGLFVVRPHE 199
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V A L ++K+ H GK+ ++ L T +L +SL L F LY +A
Sbjct: 200 VDAFVAALPVRKL-HGVGKVTATRLDRLGIQTCAQLRTWSLIDLHREF-GAFGRRLYELA 257
Query: 298 RGIDHEPVNARLVSKSI 314
RGID PV A KS+
Sbjct: 258 RGIDERPVQADQERKSV 274
>gi|221198448|ref|ZP_03571494.1| DNA polymerase IV [Burkholderia multivorans CGD2M]
gi|221208603|ref|ZP_03581604.1| DNA polymerase IV [Burkholderia multivorans CGD2]
gi|221171594|gb|EEE04040.1| DNA polymerase IV [Burkholderia multivorans CGD2]
gi|221182380|gb|EEE14781.1| DNA polymerase IV [Burkholderia multivorans CGD2M]
Length = 388
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 133/317 (41%), Gaps = 81/317 (25%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHKGVT 57
R I D DCFY VE + +PSL +PLAV GG G+IA NYEAR GV
Sbjct: 33 RKIIHCDCDCFYASVEMRDDPSLRNRPLAV-------GGRPDQRGVIATCNYEARRYGVH 85
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M A + CP++ + +PS + KYR A R+++A+ +++ VE S+DEAY+
Sbjct: 86 SAMSSALAMRKCPDLLI--LPSA-----MDKYRTASRQIMAIYRDYTADVEPLSLDEAYL 138
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D++ ER + + A ++ + V E +G S
Sbjct: 139 DVSR--SERCQGSATLIAREI------------------RQRVYETVGVTVS-------- 170
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
AGV A NK +AK+ +KP ++
Sbjct: 171 ----------AGV---------------------APNKFIAKIASDWNKPDGLFVVRPHE 199
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
V A L ++K+ H GK+ ++ L T +L +SL L F LY +A
Sbjct: 200 VDAFVAALPVRKL-HGVGKVTATRLDRLGIQTCAQLRTWSLIDLHREF-GAFGRRLYELA 257
Query: 298 RGIDHEPVNARLVSKSI 314
RGID PV A KS+
Sbjct: 258 RGIDERPVQADQERKSV 274
>gi|431926458|ref|YP_007239492.1| nucleotidyltransferase/DNA polymerase [Pseudomonas stutzeri RCH2]
gi|431824745|gb|AGA85862.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas stutzeri RCH2]
Length = 354
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 129/312 (41%), Gaps = 87/312 (27%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHKGVT 57
R I ID DCFY +E + +PSL +P+AV GG G+IA NYEAR GV
Sbjct: 7 RKIIHIDCDCFYAAIEMRDDPSLARRPIAV-------GGAADRRGVIATCNYEARAYGVR 59
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M A + CP++ + R + YR A RE+ + ++ ++E S+DEAY+
Sbjct: 60 SAMASGHALKLCPDLLILR-------PRMEAYREASREIQNIFRTYTELIEPLSLDEAYL 112
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D+T H +S + T + E
Sbjct: 113 DVTACEH-------------------------------------------FSGSATRIAE 129
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
+ IR V + + SAG+A NK LAK+ +KP ++ +
Sbjct: 130 D----------------IRRRVWQQLRITVSAGVAPNKFLAKIASEWNKPDGLFVITPAQ 173
Query: 238 VSMLYANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLY 294
V L +K++ H G++ E + L C+ + E + +L + F E+ L+
Sbjct: 174 VDEFVQELEVKRL-HGVGRVTAEKLARLGIHTCNDLREWGRLALVREFGAFGER----LW 228
Query: 295 YIARGIDHEPVN 306
+ARGID PV
Sbjct: 229 GLARGIDERPVQ 240
>gi|346319208|gb|EGX88810.1| DNA polymerase iota [Cordyceps militaris CM01]
Length = 646
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 34/262 (12%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII D DCFY QV +P L KPL + Q N + NY AR KGV + M
Sbjct: 15 RIILQFDYDCFYAQVIENKHPHLKSKPLGIRQKNI-----LATCNYHARAKGVKKLMLIT 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSE--FSNIVERASIDEAYIDLTD 121
EA++ CP++ L + G+ D++ +R+ + + L ++ ER DE ++D++D
Sbjct: 70 EARKVCPDLVL-----MDGE-DLAPFRDVSKTLYGFLKSHVWNGRAERLGFDEVFLDVSD 123
Query: 122 VVHERMKSIGHIAASQLSNTFV--------VGFGPDNNDEDARKAGVMEWLGQVYSDTDT 173
+V ++ ++ S L+ TF +GF D R G V
Sbjct: 124 IVD---YNVSCLSKSALAQTFFQLSKSDPEIGF-----PCDLRTVA-----GPVLGPYPA 170
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
S+ + LA+ + +R+ + + + + GIA NKVL+KL G HKP+ Q+ L
Sbjct: 171 SVDPDNTTLVRLALGSHLALYLRSKMEADFGYTSTCGIATNKVLSKLCGGRHKPRNQTTL 230
Query: 234 PQSSVSMLYANLSIKKVRHLGG 255
+ + A + +RH+ G
Sbjct: 231 LAWTDDDVIAFMDTHLLRHVPG 252
>gi|194016993|ref|ZP_03055606.1| DNA polymerase IV 1 (Pol IV 1) [Bacillus pumilus ATCC 7061]
gi|194011599|gb|EDW21168.1| DNA polymerase IV 1 (Pol IV 1) [Bacillus pumilus ATCC 7061]
Length = 412
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
S II IDM+ FY VE +PSL GKPLA+ + G ++ +YEAR GV M
Sbjct: 2 SNIIFHIDMNAFYANVEMAYDPSLRGKPLAISGNAKERKGIVVTCSYEARALGVKPPMPL 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
EAK+ CP + + R P + +YR++ +E+ +L E+S++VE SIDE YIDLT
Sbjct: 62 WEAKRLCPGL-IVRTP------NFDRYRSSSQEMFTILREYSDLVEPVSIDEGYIDLT 112
>gi|423561378|ref|ZP_17537654.1| DNA polymerase IV [Bacillus cereus MSX-A1]
gi|401201635|gb|EJR08500.1| DNA polymerase IV [Bacillus cereus MSX-A1]
Length = 412
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAVV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVVGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 120
>gi|452747222|ref|ZP_21947020.1| DNA polymerase IV [Pseudomonas stutzeri NF13]
gi|452008935|gb|EME01170.1| DNA polymerase IV [Pseudomonas stutzeri NF13]
Length = 354
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 130/313 (41%), Gaps = 89/313 (28%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHKGVT 57
R I ID DCFY +E + +PSL +P+AV GG G+IA NYEAR G+
Sbjct: 7 RKIIHIDCDCFYAAIEMRDDPSLARRPIAV-------GGAADRRGVIATCNYEARAYGIR 59
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M A + CP++ + +R + D+ YR A RE+ + ++ +E S+DEAY+
Sbjct: 60 SAMASGHALKLCPDLLI-----LRPRMDV--YREASREIHNIFRTYTEQIEPLSLDEAYL 112
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D+T H +S + T + E
Sbjct: 113 DVTACEH-------------------------------------------FSGSATRIAE 129
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
+ IR V + + SAG+A NK LAK+ +KP ++ +
Sbjct: 130 D----------------IRRRVWQQLRITVSAGVAPNKFLAKIASEWNKPDGLFVITPAQ 173
Query: 238 VSMLYANLSIKKVRHLGG----KLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
V L +K++ +G KLG + T CS + E + L + F E+ L
Sbjct: 174 VDEFVQMLEVKRLHGVGRVTAEKLGRLGIRT--CSDLREWRRLDLVREFGAFGER----L 227
Query: 294 YYIARGIDHEPVN 306
+ +ARGID PV
Sbjct: 228 WGLARGIDERPVQ 240
>gi|346976498|gb|EGY19950.1| hypothetical protein VDAG_01966 [Verticillium dahliae VdLs.17]
Length = 570
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 25/260 (9%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
II D DCFY V NP+L PL V Q + + NY AR +GV + MR +
Sbjct: 16 IILHFDYDCFYASVLESQNPALKSLPLGVKQKSI-----LATCNYVARARGVRKLMRISD 70
Query: 65 AKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLS--EFSNIVERASIDEAYIDLTDV 122
A++ CP++ + V G+ D++ +R+ + + A L +S VER +DE ++D+TD+
Sbjct: 71 ARKVCPDLVV-----VEGE-DLTPFRDVSKVLYAFLRGHSWSGKVERLGLDEVFMDVTDM 124
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNND-EDARKAGVMEWLGQVYSDTDTSLMENTED 181
+ M + + L+++F F D E + + G+V+ T+ + E+
Sbjct: 125 ISYNMSCLNKLT---LADSF---FCLSKTDPEKGFPCDLTKMAGRVHGTPPTAGEQQLEN 178
Query: 182 --FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI---LPQS 236
+ L + + +R + K F + G+A NK+L+KLV KP+ Q+ L
Sbjct: 179 QAYVRLLLGSHLAWYLRTNIEEKFGFTSACGVATNKLLSKLVGSKKKPRNQTTLLALENG 238
Query: 237 SVSMLYANLSIKKVRHLGGK 256
S + +I+K+ +GGK
Sbjct: 239 SAVDFMDSFTIRKIPGIGGK 258
>gi|260913921|ref|ZP_05920395.1| DNA-directed DNA polymerase IV [Pasteurella dagmatis ATCC 43325]
gi|260632008|gb|EEX50185.1| DNA-directed DNA polymerase IV [Pasteurella dagmatis ATCC 43325]
Length = 357
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 136/315 (43%), Gaps = 69/315 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMDCFY +E + NP L KP+AV T + G + NY+AR G+ M
Sbjct: 1 MKFRKIIHIDMDCFYASIEMRENPLLKDKPVAVGGLAT-QRGVLATCNYKAREFGLHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
++A + CP++ L V +++ Y++ +++ + ++ I+E S+DEAY+D+T
Sbjct: 60 PTNQALKRCPDLVLLPV-------NMALYKDVSQQIHQIFRRYTEIIEPLSLDEAYLDVT 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
A Q R G W+ Q
Sbjct: 113 --------------ACQ------------------RCFGSATWIAQ-------------- 126
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+IR A+ + SAG+A K LAK+ +KP Q ++ V+
Sbjct: 127 -------------DIRQAIWDELNLTASAGVAPLKFLAKIASEQNKPNGQFVIKPEEVTD 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
L +KK+ + GK+ + + + +T +++++ + QL + F K ++ + GI
Sbjct: 174 FIKKLPLKKIPGV-GKVTAQRLAAIGLNTCMDVQQMNKIQLLNKF-GKIGERIWQFSHGI 231
Query: 301 DHEPVNARLVSKSIG 315
D V V KS+G
Sbjct: 232 DDRDVQPHRVRKSVG 246
>gi|157692892|ref|YP_001487354.1| DNA polymerase IV [Bacillus pumilus SAFR-032]
gi|157681650|gb|ABV62794.1| DNA-directed DNA polymerase IV [Bacillus pumilus SAFR-032]
Length = 414
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
S II IDM+ FY VE +PSL GKPLA+ + G ++ +YEAR GV M
Sbjct: 4 SNIIFHIDMNAFYANVEMAYDPSLRGKPLAISGNAKERKGIVVTCSYEARALGVKPPMPL 63
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
EAK+ CP + + R P + +YR++ +E+ +L E+S++VE SIDE YIDLT
Sbjct: 64 WEAKRLCPGL-IVRTP------NFDRYRSSSQEMFTILREYSDLVEPVSIDEGYIDLT 114
>gi|384550711|ref|YP_005739963.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302333560|gb|ADL23753.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 356
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD F+ QVE + NP L GKP+ +V G + +YEAR GV M
Sbjct: 1 MTERRIIHIDMDYFFAQVEMRDNPKLKGKPV-IVGGKASNRGVVSTASYEARKYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP ++ YR +++++ +++ VE S+DEAY+D+T
Sbjct: 60 PMSQAHKLCPNGYFV-------TSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDIT 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
++V + AS+++ F+ RK ++E T
Sbjct: 113 ELVRP------DLPASKIAQ-FI------------RK----------------DILEQT- 136
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
Q A AGV ++NK LAKL G++KP +++ +V
Sbjct: 137 --QLTASAGV---------------------SYNKFLAKLASGMNKPDGMTVIDYRNVHD 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ L I + GK +V+ T +L S +L H K LY ARGI
Sbjct: 174 ILMALDIGDFPGV-GKASKKVMHDHGIFTGKDLYNKSEFEL-IHLFGKRGRGLYNKARGI 231
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
DH V + V KS+G + F T + +++ + EL+ + E L
Sbjct: 232 DHSEVKSTRVRKSVGTERTFA--TDVNDDEEILRKVWELSGKTAEGL 276
>gi|229174821|ref|ZP_04302342.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus MM3]
gi|423457670|ref|ZP_17434467.1| DNA polymerase IV [Bacillus cereus BAG5X2-1]
gi|228608653|gb|EEK65954.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus MM3]
gi|401148054|gb|EJQ55547.1| DNA polymerase IV [Bacillus cereus BAG5X2-1]
Length = 412
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEARDYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQLVVMR-------PNFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I + ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQVLLTELQLPCSIGIAPN 153
>gi|255536316|ref|YP_003096687.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
gi|255342512|gb|ACU08625.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
Length = 360
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 151/348 (43%), Gaps = 81/348 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG----IIAVNYEARHKGVTRH 59
R I +DMD FY VE +P L GKP+AV GGG + A +YEAR GV
Sbjct: 5 RKIIHVDMDAFYASVEQHDHPELRGKPVAV-------GGGQYGVVAAASYEARKFGVRSA 57
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M G A + CP + + K +Y+ +++ ++ +E++++VE S+DEAY+D+
Sbjct: 58 MPGRLALEKCPHLIVV-------KPRFQRYKEISQQIRSIFNEYTDLVEPLSLDEAYLDV 110
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
T E K I ++ ++ AR E G++Y +T +
Sbjct: 111 T----ENKKGI------------------ESANDIAR-----EIRGRIYEETGLT----- 138
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
SAGI+ NK LAK+ +KP Q + + +
Sbjct: 139 ---------------------------ASAGISVNKFLAKVASDYNKPNGQKTIHPTQIL 171
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
L I+K +G +++ E + +L+ SL++L F K+ ++ Y + RG
Sbjct: 172 EFMEELPIEKFYGIGKVTANKMHE-MHIFKGADLKNKSLEELIRLF-GKSGNYYYNVVRG 229
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
I + V + KS+ + F L + V ++ +++E+ ERL
Sbjct: 230 IHNSEVKPHRIQKSVAVEETF--WDNLLDEEQVFAQLKTISEELEERL 275
>gi|342874078|gb|EGU76151.1| hypothetical protein FOXB_13323 [Fusarium oxysporum Fo5176]
Length = 565
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 127/283 (44%), Gaps = 35/283 (12%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+RII D DCFY QV + L PL V Q N + NY AR +G+T+ M
Sbjct: 14 ARIILQFDYDCFYAQVFENKDAKLKKLPLGVKQKNC-----LATCNYNARARGLTKLMSV 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLT 120
EAK+ CPE+ L V G+ D++ +R+ + + FS + VER DE ++D+T
Sbjct: 69 SEAKRLCPELVL-----VDGE-DLTPFRDMSKTLFNFFKTFSWNHKVERLGFDEVFMDVT 122
Query: 121 DVVHERMKSIGHIAASQLSNTFVV--------GFGPDNNDEDARKAGVMEWLGQVYSDTD 172
D++ + + + L +F GF D AG +E L D
Sbjct: 123 DIIEYNLSCLNR---ASLEESFFCLSKSDPERGFHCDVTS----IAGCVEGLAISTPDL- 174
Query: 173 TSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI 232
N + L + + +R V K F + GI+ NK+L+KLV +KP+ Q+
Sbjct: 175 -----NNLAYMRLMLGSHFAQFLRQQVEEKYGFTSTCGISTNKMLSKLVGSKNKPRNQTT 229
Query: 233 LPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEK 275
L + + A + K+R + G LG + V+ L ++ K
Sbjct: 230 LMAITEDEVIAFVDTHKLRRIPG-LGFKTVQVLGTQAGADMSK 271
>gi|294881170|ref|XP_002769279.1| dna polymerase eta, putative [Perkinsus marinus ATCC 50983]
gi|239872557|gb|EER01997.1| dna polymerase eta, putative [Perkinsus marinus ATCC 50983]
Length = 945
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 155/382 (40%), Gaps = 88/382 (23%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARH-KGVTRHMR 61
S +IAL D+DCFY QVE + P V Q++ ++AV+Y AR GV R
Sbjct: 5 SPVIALFDLDCFYAQVERRRLGIPSSVPFVVSQWDM-----VLAVDYSARKLPGVQRGAL 59
Query: 62 ---GDEAKQHCPEIELCRV--------------PSVRGKADISKYRNAGREVIAVLSEF- 103
++A +E+ V P R + + +YR A EV+ L
Sbjct: 60 TSIAEKAGAKSAHVEVVDVVTGETFPDGPPPGEPRDRYRVSLDRYREASEEVMRALRTAL 119
Query: 104 --SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161
S +ERASIDE ++DLT + E E+ AG+
Sbjct: 120 PESAPLERASIDEVFVDLTSLCEE-------------------------EQEEQMPAGIK 154
Query: 162 EWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLV 221
G+V QE AI E +R V S T F SAG+A N+ LAKL
Sbjct: 155 WAAGEV----------GNSALQEGAI---WAERLRKEVESITGFTMSAGVASNRQLAKLA 201
Query: 222 CGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQL 281
CG++KP + L + + A + +K +R +G ++ L C T ++
Sbjct: 202 CGVNKPDAVTALSDNKILDFMAGVKVKSLRGVGRATFHDIESLLPCLT----GDTKCGEI 257
Query: 282 QSHFEE--------KTASWLYYIARGIDHEPV-NAR-------LVSKSIGCCKRFPGKTC 325
+E + +WL +RG D PV NA+ L + S+ K F +
Sbjct: 258 WPVLDELDPDPANAELVAWLKLASRGRD--PVENAKPVKDSESLKAGSVSASKIF--RPY 313
Query: 326 LATRQDVSHWIQELADEVCERL 347
L + WI+ LA +V +R+
Sbjct: 314 LKEAAKMQFWIESLAKDVVDRV 335
>gi|47226716|emb|CAG07875.1| unnamed protein product [Tetraodon nigroviridis]
Length = 520
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 169/373 (45%), Gaps = 31/373 (8%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R I +DMD FY VE + P L KP+AV + + NY AR GV M G
Sbjct: 92 TRAIVHVDMDAFYAAVEMRDCPELKDKPMAVGSMSM-----LSTSNYLARKYGVRAAMPG 146
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP + + VP+ + KYR E+ + +++ S+DEAY+D T+
Sbjct: 147 FIAKKLCPHLVI--VPT-----NFDKYRAVSNEIREIFTDYDPGFMPVSLDEAYLDFTEH 199
Query: 123 VHERMKSIGHIAASQL-SNTFVVGFGPDNNDEDARKA--GVMEWLGQVYSDTDTSLMENT 179
V +R + + ++T G + + + A++A G + ++ D+ +S +
Sbjct: 200 VEKRQSWPESLRTRRYRASTTTTGRSCEESGKLAQEAAPGTPDLSPVLFEDSPSSSSNSE 259
Query: 180 EDFQELAIAGVIVEE----IRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP- 234
+ I G VEE +R + KT SAGIA N +LAK+ +KP Q LP
Sbjct: 260 DAGDAFEIFGTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPP 319
Query: 235 -QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLEL-EKFSLKQLQSHFEEKTASW 292
+ +V +L ++KV GK+ ++++ L S+ L +K +L L F E +
Sbjct: 320 TREAVMEFVCDLPVRKVVSGVGKVSEKLLSALGISSCSHLGQKMALLSLL--FSETSWHH 377
Query: 293 LYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLT 352
++ G+ + KS+ + F K A + +S L E+CE L +DL
Sbjct: 378 FLQVSLGLGSAFIPRHEERKSMSTERTF--KEMSAVEEQLS-----LCHELCEDLANDLK 430
Query: 353 LNKRRAQLLTVSF 365
+ + +T+
Sbjct: 431 KEGLKGKTVTLKL 443
>gi|340780896|ref|YP_004747503.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340555049|gb|AEK56803.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 140/349 (40%), Gaps = 73/349 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRH 59
+ R I +DMD F+ VE + P L G P V+ G G++A +YEAR G+
Sbjct: 9 LALRKIIHVDMDAFFAAVEQRDRPELRGLP--VIVGGDPNGRGVVATCSYEARRFGIRSA 66
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M A+ CP+ VR + D YR R+V+ +I +Y L
Sbjct: 67 MSAARARSLCPQAIF-----VRPRMD--AYREVSRQVM-------------TILRSYTAL 106
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE +L + TD +L
Sbjct: 107 VE--------------------------PLSLDE--------AFLDVTAATTDGTL---- 128
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
A I EI + +T SAG+++NK+LAKL KP ++P
Sbjct: 129 --------AVEIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERGL 180
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
A L + K+ H G + + + T+L+L SL+ L +HF K+ W Y +AR
Sbjct: 181 AFLAPLPVGKL-HGVGPATVKKLSAMGVETVLDLRNLSLEFLVTHF-GKSGGWFYDVARA 238
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
ID PV KS+G + F L R + +QE+A +V RL+
Sbjct: 239 IDERPVQPSRQRKSVGTERTF--SKNLEDRSVMRTTLQEMAAQVAARLQ 285
>gi|149181624|ref|ZP_01860117.1| DNA polymerase IV [Bacillus sp. SG-1]
gi|148850602|gb|EDL64759.1| DNA polymerase IV [Bacillus sp. SG-1]
Length = 417
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE NP L GKPLA+ + G I+ +YEAR GV M
Sbjct: 9 GRVILHVDMNSFYASVEAAYNPELKGKPLAIAGNPDERRGIIVTCSYEARGYGVKTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R + +YR A + + +L ++S +VE SIDE Y+D+TD
Sbjct: 69 WEAKKLCPQLIIMR-------PNFDRYRAASQGMFEILRQYSQLVEPVSIDEGYVDITD 120
Score = 44.3 bits (103), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 12/179 (6%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I E I+ +LS+ S GIA NK LAK + KP ++L + + L +K++
Sbjct: 130 IAESIQNQILSQQDLPSSIGIAPNKFLAKTASDMKKPMGITVLRKRDLPERIWPLDVKEM 189
Query: 251 RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLV 310
+G K ++ +++ T+ EL K + L+S L A G D PV+ V
Sbjct: 190 HGIGEKTAQKLY-SMEIHTIGELAKANEIVLKSQLGINGLR-LKARANGTDDRPVDPDSV 247
Query: 311 S--KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL--EDDLTLNKRRAQLLTVSF 365
KS+G P T A ++++ + + +L+ +V R+ +D L L +LT+ F
Sbjct: 248 YDFKSVGNSTTLPRDT--ANQKELLNTLNQLSGKVASRMKSKDILALT----VMLTMRF 300
>gi|302915469|ref|XP_003051545.1| hypothetical protein NECHADRAFT_92505 [Nectria haematococca mpVI
77-13-4]
gi|256732484|gb|EEU45832.1| hypothetical protein NECHADRAFT_92505 [Nectria haematococca mpVI
77-13-4]
Length = 564
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 125/265 (47%), Gaps = 21/265 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R +A D DCFY QV NP+L P+ V Q N + NY AR G+ + M
Sbjct: 16 RSVAAPDYDCFYAQVFENKNPALKKLPVGVKQKNC-----LSTCNYNARALGLKKLMSVS 70
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLTD 121
EAK+ CPE+ L + G+ D++ +R+ + + FS + VER DE ++D+TD
Sbjct: 71 EAKRLCPELVL-----MDGE-DLTPFRDTSKILFNYFKTFSWNHKVERLGFDEVFMDVTD 124
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNND-EDARKAGVMEWLGQVYSDTDTSLMENTE 180
+V + + + L+++F F D E + + G V L +
Sbjct: 125 IVEYNLLCLNK---ASLADSF---FCLSKQDPERGFQCDLTSIAGCVQDTASQDLDTESP 178
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+ L + + +R + K F + GIA NK+L+KLV G +KP+ Q+ L +
Sbjct: 179 AYLRLLLGSHFAQFLRLQIEEKFGFTSTCGIATNKMLSKLVGGNNKPRNQTTLLALTQDE 238
Query: 241 LYANLSIKKVRHLGGKLGDEVVETL 265
A L K+R + G LG ++VE L
Sbjct: 239 AIAFLDDHKLRKIPG-LGFKIVEVL 262
>gi|73952201|ref|XP_536321.2| PREDICTED: DNA polymerase kappa isoform 2 [Canis lupus familiaris]
Length = 861
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 141/315 (44%), Gaps = 45/315 (14%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
I IDMD FY VE + NP L KP+AV + + NY AR GV M G A
Sbjct: 103 IVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LSTSNYYARRFGVRAAMPGFIA 157
Query: 66 KQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 125
K+ CP++ + VP + KYR EV +L+++ S+DEAY+++T + E
Sbjct: 158 KRLCPQLII--VP-----PNFDKYRAVSTEVKEILADYDPNFLAMSLDEAYLNITKHLQE 210
Query: 126 RMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ-----VYSDTDTSLM---- 176
R F+ P ND+ ++ + + ++ D+ L
Sbjct: 211 RQN-----WPEDKRKYFIKTGNPLENDKPRKEVNKLREHERSISPLLFDDSPPDLQSQGN 265
Query: 177 ---------ENTEDFQELAIAGV----IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCG 223
+N + Q + G +V+EIR + KT SAGIA N +LAK+
Sbjct: 266 PLQGNSEEEDNPQTLQNSIVFGTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSD 325
Query: 224 LHKPQKQ-SILPQSSVSM-LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQL 281
+KP Q +LP M +L I+KV + GK+ +++++ L T EL + + L
Sbjct: 326 KNKPNGQYQVLPNRQAVMDFIKDLPIRKVSGI-GKVTEKMLKALGIITCTEL--YQQRAL 382
Query: 282 QSHFEEKTASWLYYI 296
S +T SW +++
Sbjct: 383 LSLLFSET-SWHHFL 396
>gi|70993736|ref|XP_751715.1| DNA polymerase iota [Aspergillus fumigatus Af293]
gi|66849349|gb|EAL89677.1| DNA polymerase iota, putative [Aspergillus fumigatus Af293]
gi|159125363|gb|EDP50480.1| DNA polymerase iota, putative [Aspergillus fumigatus A1163]
Length = 596
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 33/248 (13%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII D DCFY V P L PLAV Q ++ NYEAR +G+ +
Sbjct: 9 GRIIIHFDYDCFYASVFEAEQPVLKSLPLAVQQKQI-----VVTCNYEARRRGLRKLQLI 63
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEF--SNIVERASIDEAYIDLT 120
EAKQ CP++ + V G+ D++++RNA +E+ L +F VE+ DE ++D++
Sbjct: 64 KEAKQICPDVVI-----VLGE-DLTRFRNASKELYLFLQDFVWGKRVEKLGFDEVFLDVS 117
Query: 121 DVVHERMKSIGHIAASQLSNTFV--------VGFGPDNNDEDARKAGVMEWLGQVYSDTD 172
D+V ++ + + L N+F VGF D D + + V +D
Sbjct: 118 DMVTYNVEMLNR---NDLKNSFFHLDRRDPTVGFTYDATDFHGH---AYQAVPDVATDAA 171
Query: 173 TSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-S 231
+ + L +A + +R + + + + GI+ +K+LAKLV HKP Q +
Sbjct: 172 SEWLRT-----RLLVASHLAAYLRNQLEYQKGYTATVGISTSKLLAKLVGNTHKPNSQTT 226
Query: 232 ILPQSSVS 239
+LP +V+
Sbjct: 227 LLPPYTVA 234
>gi|399026065|ref|ZP_10728032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
gi|398076760|gb|EJL67810.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
Length = 364
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 154/366 (42%), Gaps = 83/366 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG---GII-AVNYEARHKGVTRH 59
R I +DMD FY VE NP+L GK +AV GG G++ A +YEAR GV
Sbjct: 8 RKIIHVDMDAFYASVEQHDNPALKGKAIAV-------GGEHRGVVSAASYEARKYGVRSA 60
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M AK+ CP L VP ++Y+ R+ I E + +
Sbjct: 61 MPSKTAKEKCPH--LIFVPP-----HFARYKEISRK----------------IREIFYEY 97
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
TD+V P + DE + ++ T
Sbjct: 98 TDLVE-----------------------PLSLDE--------------------AYLDVT 114
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
E+ +E+ A I EIR + +T SAGI+ NK LAK+ ++KP Q + +
Sbjct: 115 ENKKEIESANQIAREIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDKIE 174
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
L ++K +G +++ TL +L+K +L++L S F K+ S+ Y + RG
Sbjct: 175 NFLEELPVEKFYGVGRVTANKMF-TLGIFKGKDLKKKTLQELVSLF-GKSGSYYYNVVRG 232
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
I + V + KS+ + F L Q ++ ++ L+ E+ +RL+ + L RA
Sbjct: 233 IHNSEVKPHRIQKSVAVERTFF--EDLFDEQQINEKLESLSAELHQRLQKNNILG--RAL 288
Query: 360 LLTVSF 365
L + +
Sbjct: 289 TLKIKY 294
>gi|332667689|ref|YP_004450477.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
gi|332336503|gb|AEE53604.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
Length = 358
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 175/414 (42%), Gaps = 91/414 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ VE + NP L G+PLAV + +YEAR GV M G
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPDLRGRPLAVGGGGPRGVVA--SASYEARKYGVRSAMSGG 59
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A++ CPEI VR + D+ YR+ + I + ++D TD+V
Sbjct: 60 MARRLCPEIVF-----VRSRFDV--YRSVSYQ----------------IRDIFLDYTDLV 96
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ TE+ +
Sbjct: 97 E-----------------------PLSLDE--------------------AYLDVTENKK 113
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQK-QSILPQSSVSMLY 242
+ A +I +EIR + ++T SAG++ NK LAK+ ++KP + I P+ +++ L
Sbjct: 114 NMTSATLIAQEIRKRIEAETGLTASAGVSFNKFLAKIASDINKPNGIKVITPEEAIAFL- 172
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L+++K H GK+ + + T +L++ S L F K + Y I R D+
Sbjct: 173 EQLAVEKF-HGVGKVTARKMHNMGIYTGGDLKQRSEADLVRFF-GKAGRYYYRIVRAEDN 230
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVS------HWIQELADEVCERLEDDLTLNKR 356
VN + KSIG + F +DVS + + +LA+ V + D T N
Sbjct: 231 REVNPHRIRKSIGAERTF--------NEDVSDPEIMKNKLTDLAEGVHRYM--DKTQNFG 280
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
R L + + D K+ + SRS A L +++ + ++++ PI L
Sbjct: 281 RTVTLKL---KSPDFKILTRSRSFASEIRNLDELIRIVHDLLDQHIEEAPIVRL 331
>gi|291241885|ref|XP_002740840.1| PREDICTED: DNA-directed DNA polymerase eta-like [Saccoglossus
kowalevskii]
Length = 410
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 289 TASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
T +WL+ + RGID+EPV R + KS+GC K F GK LATR +V +W+ +LA E+ ERL+
Sbjct: 2 TRAWLHDVGRGIDNEPVRPRQLPKSVGCGKNFSGKLALATRNEVKYWLLQLATEMEERLQ 61
Query: 349 DDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPIS 408
+ +NKR A+ ++V + + SRS L + I ++ VI N+A
Sbjct: 62 IESEMNKRVAKSVSVQ-VRWGGNPPQTASRSFGLHNMDADTISRNALSVIQCFNTAGNHQ 120
Query: 409 D-LTPPLLFLGLSASKFSPLGSH---PSIQQFF 437
P ++ L + ASKF+ G++ SI FF
Sbjct: 121 KAWCPAIITLSMCASKFTETGNNIGKMSISSFF 153
>gi|295669248|ref|XP_002795172.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285106|gb|EEH40672.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 707
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 124/276 (44%), Gaps = 53/276 (19%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR+I D DCFY V NP+L PLAV Q ++ NYEAR +G+ +
Sbjct: 19 SRVILHFDYDCFYASVFEAENPALKSLPLAVQQKQI-----VVTCNYEARRRGLRKLQLI 73
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNI-------VERASIDEA 115
EAK+ CP++ + VP D++K+R+A +E+ L F + VER DE
Sbjct: 74 KEAKKVCPDVVI--VPG----EDLTKFRDASKEIYMFLKGFVGVGKGWGGRVERLGFDEV 127
Query: 116 YIDLTDVVHERMKSIGHIAASQLSNTFV--------VGFG----------------PDNN 151
++D+T ++ ++ + + + L ++F +GF P +
Sbjct: 128 FLDVTSLIDYNVELLNY---NDLGSSFFHLDKTDPTLGFAYDARTVSGPTYPRSQTPHHQ 184
Query: 152 DEDARKAGVMEW---LGQVYSDTDTSLM----ENTEDFQELAIAGVIVEEIRAAVLSKTQ 204
D D + G S T+ + + +N +Q L + + IR +
Sbjct: 185 DTDGSAPCATSYSTTAGAFPSKTNNTHISINAQNKTLYQRLILGSHLASYIRHKLEQHKS 244
Query: 205 FHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
F + GI+ +K+LAKL HKP+ Q ++LP SV+
Sbjct: 245 FTATVGISTSKLLAKLAGNFHKPRNQTTLLPPYSVA 280
>gi|365886913|ref|ZP_09425808.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3809]
gi|365337547|emb|CCD98339.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3809]
Length = 368
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 122/253 (48%), Gaps = 15/253 (5%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D + ++ T++ Q + +A I +IRA + ++T + SAGI++NK LAKL KP Q
Sbjct: 116 DEAYLDVTDNLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQY 175
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
++ + +L + + +G + L T L++ +L LQ HF K S
Sbjct: 176 VISPEMGAAFVESLPVGRFHGIGPATAAK-FNGLGIHTGLDIRNQTLPFLQHHF-GKAGS 233
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDL 351
+ Y+I+RGIDH PV A + KSIG F T L + ++ +Q L D+V E
Sbjct: 234 YYYWISRGIDHRPVRANRIRKSIGAENTF--ATDLTEFEPMAAELQPLIDKVWRHCEA-- 289
Query: 352 TLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLT 411
T N+ R L V F D + + SRS+A A ++ +S+ ++ P+
Sbjct: 290 TGNRGRTVTLRVKF---ADFDMITRSRSVATAVSSRAELEHLSLALLQAEM---PVKK-- 341
Query: 412 PPLLFLGLSASKF 424
P+ LG+S S
Sbjct: 342 -PVRLLGVSLSSL 353
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + NP L G+P+AV + + G + A +YEAR GV M
Sbjct: 16 RKIIHIDMDAFYASVEQRDNPDLRGRPVAV--GGSRERGVVAAASYEARKFGVRSAMPSV 73
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
AK+ CP++ K Y+ +++ A+ +E + I+E S+DEAY+D+TD
Sbjct: 74 TAKRLCPDLIFV-------KPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYLDVTD 124
>gi|388457043|ref|ZP_10139338.1| ImpB/MucB/SamB family protein [Fluoribacter dumoffii Tex-KL]
Length = 355
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 133/318 (41%), Gaps = 69/318 (21%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR I IDMDCFY +E + NP L+ KP+AV + G + NY AR GV M
Sbjct: 2 SRKIIHIDMDCFYAAIEIRDNPLLNNKPVAVGGLANQR-GVLCTCNYIARQYGVHSAMPT 60
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A++ CP++ + V ++ KY+ + + ++ +F+++VE S+DEA++D+T
Sbjct: 61 AVAQRLCPDLIVLPV-------NMPKYKEVSQSINSIFRQFTDLVEPLSLDEAFLDVTHS 113
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
H + G ++ Q +T +
Sbjct: 114 SHCQ--------------------------------GSATYIAQALRETI------VKQH 135
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
Q A AGV A NK LAK+ +KP ++ V
Sbjct: 136 QLTASAGV---------------------APNKFLAKIASAWNKPNGLFVITPEHVEQFI 174
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L + K+ + GK+ + L T +L+++ L+ L HF K L+Y ARGID+
Sbjct: 175 KTLPVNKLFGV-GKVTASKLNQLNIFTCNDLQEYPLEFLIKHF-GKMGQQLFYQARGIDN 232
Query: 303 EPVNARLVSKSIGCCKRF 320
PV + KS+ K F
Sbjct: 233 RPVQPNRLRKSLSVEKTF 250
>gi|410104466|ref|ZP_11299379.1| DNA polymerase IV [Parabacteroides sp. D25]
gi|409234275|gb|EKN27105.1| DNA polymerase IV [Parabacteroides sp. D25]
Length = 353
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 129/307 (42%), Gaps = 72/307 (23%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCP 70
MD FY VE + NP L GKPLAV + G + A +YEAR GV M +AK+ CP
Sbjct: 1 MDAFYASVEQRDNPELRGKPLAVGHAE--QRGVVAAASYEARKYGVRSAMASQKAKRLCP 58
Query: 71 EIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 130
++ V G+ D+ Y++ R+ I E + D TD++
Sbjct: 59 DLIF-----VHGRMDV--YKSVSRQ----------------IHEIFHDYTDIIE------ 89
Query: 131 GHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGV 190
P + DE + ++ T++ Q +++A
Sbjct: 90 -----------------PLSLDE--------------------AFLDVTDNKQGISLAVD 112
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I +EI+ + SAG+++NK LAK+ KP + S A L I+
Sbjct: 113 IAKEIKKRIWENLNLIASAGVSYNKFLAKIASDYRKPNGLCTIHPSQALDFIARLPIESF 172
Query: 251 RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IARGIDHEPVNARL 309
+ G + + TL L+L + S + L F + A LYY ARGID+ PV A
Sbjct: 173 WGV-GPVTARKMHTLGIHNGLQLRECSGEMLTRQFGK--AGILYYEFARGIDNRPVEAVR 229
Query: 310 VSKSIGC 316
+ KS+GC
Sbjct: 230 IRKSVGC 236
>gi|392961289|ref|ZP_10326749.1| DNA polymerase IV [Pelosinus fermentans DSM 17108]
gi|421055292|ref|ZP_15518255.1| UMUC domain protein DNA-repair protein [Pelosinus fermentans B4]
gi|421072172|ref|ZP_15533284.1| DNA polymerase IV [Pelosinus fermentans A11]
gi|392439675|gb|EIW17376.1| UMUC domain protein DNA-repair protein [Pelosinus fermentans B4]
gi|392446141|gb|EIW23435.1| DNA polymerase IV [Pelosinus fermentans A11]
gi|392453961|gb|EIW30814.1| DNA polymerase IV [Pelosinus fermentans DSM 17108]
Length = 387
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 117/438 (26%), Positives = 176/438 (40%), Gaps = 100/438 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ VE + N +L GKPL V T G + +YEAR GV M
Sbjct: 3 RWIIHIDMDAFFAAVEQRDNEALRGKPLIV--GGTGNRGVVATASYEARRFGVHSAMSMV 60
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EA++ CPE VP D +KY E+ + SEFS +VE S+DEA++D+T
Sbjct: 61 EARRRCPEGNF--VP-----CDHAKYSRVSIELQRIFSEFSPVVEPLSLDEAFLDVTG-- 111
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
ME Q+Y+ +
Sbjct: 112 -------------------------------------ME---QLYASPE----------- 120
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
E+A+ I+ + S+ SAG+A NK LAKL + KP ++ +
Sbjct: 121 EIAVC------IKERIESELHLTASAGVAPNKFLAKLASEMKKPNGLFVVYPGEEEAMLR 174
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
NL I + +G + +V++ L T+ +L + ++ L H + A ++ +A G D
Sbjct: 175 NLPITSMWGVGKSMA-QVLKNLGIYTIGQLAQTNVALLVKHCGQ-MAYKIHALAHGQDDR 232
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED------DLTLNKRR 357
PV A L KSIG FP + T + + LA++V RL +T+ R
Sbjct: 233 PVVADLEPKSIGNELTFP--VDIITVSQIETELLALAEKVGWRLRQYDYSGKTITIKVRF 290
Query: 358 AQLLTVSFTQETDGKVNSCSRSIALASYKLQD--IVEVSMQVINKTNSAPPISDLTPPLL 415
A T+ +RS L Y D I V+M++ ++ I
Sbjct: 291 ASFKTI-------------TRSKTLLDYTQFDDVIYNVAMEICHQIPMGEGIR------- 330
Query: 416 FLGLSASKFSPLGSHPSI 433
LGL+ S G S+
Sbjct: 331 LLGLTVSNLQSGGGQLSL 348
>gi|363582785|ref|ZP_09315595.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium HQM9]
Length = 365
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 144/351 (41%), Gaps = 82/351 (23%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG----GII-AVNYEARHKGV 56
TSR I +DMD FY VE + NP L GK +AV GG G+I A +YEAR GV
Sbjct: 5 TSRKIIHVDMDAFYASVEQRDNPDLKGKAIAV-------GGSSDRGVISAASYEARKFGV 57
Query: 57 TRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAY 116
M AK+ CP EL V + +Y+ ++V A+ +
Sbjct: 58 RSAMSSVVAKKLCP--ELIFV-----RHHFERYKEVSQQVRAI----------------F 94
Query: 117 IDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLM 176
+ TD+V P + DE Y D +
Sbjct: 95 FEYTDLVE-----------------------PLSLDE-------------AYLDVTVNKK 118
Query: 177 ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
N A +I EEIR +L KT SAGI+ NK +AK+ +KP Q + +
Sbjct: 119 GNPS-------ATLIAEEIREKILQKTGLTASAGISINKFIAKVASDYNKPNGQKTVHPT 171
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
V L IKK + GK+ + + L T +L+ + L +F + A + Y I
Sbjct: 172 EVLDFLEALDIKKFYGV-GKVTQKKMYALGIYTGADLKTKTEAYLTENFGKSGAHY-YRI 229
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
RGI H V KSIG + F LA+ + ++EL++E+ RL
Sbjct: 230 VRGIHHSAVKPHRTRKSIGAERTF--NENLASEIFMEERLKELSEELARRL 278
>gi|85710885|ref|ZP_01041946.1| DinP [Idiomarina baltica OS145]
gi|85695289|gb|EAQ33226.1| DinP [Idiomarina baltica OS145]
Length = 356
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 142/350 (40%), Gaps = 73/350 (20%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+R IAL+D+D F+ VE +PSL +P AV NY AR GV M
Sbjct: 4 VTRKIALLDLDAFFAAVEVLRDPSLQNRPFAVGGGGDRGVVA--TANYIARRFGVHSAMS 61
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
G A+Q CP++ K + ++Y+ +V +L+ ++ +VE ASIDE
Sbjct: 62 GHRARQLCPQLVFV-------KPNFAEYKALSYQVRDILARYTPLVEPASIDE------- 107
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
F D + DA K
Sbjct: 108 ------------------------FYLDLTENDAFKGS---------------------- 121
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
A + VE IR + S+ SAGI++ K++AK+ +KP Q ++P +V
Sbjct: 122 ------ASLTVEAIRREI-SQLGITGSAGISNQKMVAKIASDDNKPNGQKVVPPENVFDY 174
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
A L +K+V +G K + + ++ S +QLQ EK L+ +GID
Sbjct: 175 LAVLPLKRVPGVGPK-SQATLARYGFTHGHHIQAASTEQLQQILGEKAGWLLFQRCQGID 233
Query: 302 HEPVNARLVSKSIGCCKRFPGKT-CLATRQDVSHWIQELADEVCERLEDD 350
PV + KS+G + P L T QD Q+L ++ +RL+ D
Sbjct: 234 PRPVTVDRIRKSVGVEQTLPADIQQLRTVQDYIQ--QQLLPQLKKRLKID 281
>gi|374709016|ref|ZP_09713450.1| DNA polymerase IV [Sporolactobacillus inulinus CASD]
Length = 403
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 7/124 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R+I +DM+ FY VE +P L KPLA+ + G ++ +YEAR GV M
Sbjct: 4 ARVIFHVDMNSFYASVEIANHPELREKPLAIAGKAEERHGIVVTSSYEARKMGVRTTMTV 63
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P D + YR ++ +L +++NIVE+ASIDE Y+D+++
Sbjct: 64 REAKKKCPQL-IVRHP------DFALYRRTSEQLFTLLKDYTNIVEKASIDEGYLDVSNW 116
Query: 123 VHER 126
+H R
Sbjct: 117 IHRR 120
>gi|426232466|ref|XP_004010243.1| PREDICTED: DNA polymerase kappa [Ovis aries]
Length = 871
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 139/315 (44%), Gaps = 45/315 (14%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
I IDMD FY VE + NP L KP+AV + + NY AR GV M G A
Sbjct: 103 IVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LTTSNYHARRFGVRAAMPGFIA 157
Query: 66 KQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 125
K+ CP++ + VP + KY+ REV +L+++ S+DEAY+++T + E
Sbjct: 158 KRLCPQLII--VP-----PNFDKYQAVSREVKEILTDYDPNFMAMSLDEAYLNITKHLEE 210
Query: 126 RM-----KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME--- 177
R K I A G D E R + ++ D+ L
Sbjct: 211 RKNWPEDKRKYFITAGNSLENDKPGKEVDKLSEGERSVSPL-----LFEDSPPDLQSPGN 265
Query: 178 ----------NTEDFQELAIAGV----IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCG 223
N + Q + G +V+EIR + KT SAGIA N +LAK+
Sbjct: 266 PFQVNFEEPNNPQIHQNSIVFGTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSD 325
Query: 224 LHKPQKQ-SILPQSSVSM-LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQL 281
+KP Q ILP M +L I+KV + GK+ +++++ L T EL + + L
Sbjct: 326 KNKPNGQYQILPNRQAVMDFIKDLPIRKVSGI-GKVTEKMLKALGIITCTEL--YQQRAL 382
Query: 282 QSHFEEKTASWLYYI 296
S +T SW +++
Sbjct: 383 LSLLFSET-SWHHFL 396
>gi|423389540|ref|ZP_17366766.1| DNA polymerase IV [Bacillus cereus BAG1X1-3]
gi|401641631|gb|EJS59348.1| DNA polymerase IV [Bacillus cereus BAG1X1-3]
Length = 412
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I + ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQVLLTELQLPCSIGIAPN 153
>gi|425766046|gb|EKV04676.1| hypothetical protein PDIG_87610 [Penicillium digitatum PHI26]
gi|425778738|gb|EKV16844.1| hypothetical protein PDIP_33630 [Penicillium digitatum Pd1]
Length = 1328
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 40/279 (14%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII +D DCFY V P L PLAV Q ++ NYEAR +G+ +
Sbjct: 9 SRIILHLDYDCFYASVFEVEQPELRSCPLAVQQKQI-----VVTCNYEARRRGLHKLQLI 63
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEF--SNIVERASIDEAYIDLT 120
+AK+ CP++ + V G+ D++K+RNA +E+ + F VE+ DE ++D+T
Sbjct: 64 KDAKRICPDVVI-----VLGE-DLTKFRNASKELYLLARSFVWGGRVEKLGFDELFLDVT 117
Query: 121 DVVHERMKSIGHIAASQLSNTF--------VVGFGPDNNDEDARKAGVMEWLGQVYSDTD 172
+++ +IG + + L N++ VGF D +E V
Sbjct: 118 EMIE---YNIGVLNQNDLENSYFHLDRKDPTVGFSYDATRFQGSTFPAIE-TASVAQKDS 173
Query: 173 TSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-S 231
TSL L +A + IR+ + + F + GI+ +K+LAKLV +HKP Q +
Sbjct: 174 TSLK------MRLRVASHLQCHIRSKMEHQMGFTATGGISTSKLLAKLVGNVHKPNGQTT 227
Query: 232 ILP--------QSSVSMLYANLSIKKVRHLGGKLGDEVV 262
+LP S+V IKK+ +G ++ +++
Sbjct: 228 LLPPYTATKDTTSNVFQFLDGHEIKKIPGIGFRIAQKLI 266
>gi|160892192|ref|ZP_02073195.1| hypothetical protein BACUNI_04655 [Bacteroides uniformis ATCC 8492]
gi|317480771|ref|ZP_07939857.1| impB/mucB/samB family protein [Bacteroides sp. 4_1_36]
gi|156858670|gb|EDO52101.1| ImpB/MucB/SamB family protein [Bacteroides uniformis ATCC 8492]
gi|316903112|gb|EFV24980.1| impB/mucB/samB family protein [Bacteroides sp. 4_1_36]
Length = 367
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 133/316 (42%), Gaps = 70/316 (22%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD FY VE + NP+L GKP+AV + G + A +YEAR GV M
Sbjct: 1 MTGRKIIHIDMDAFYASVEQRDNPALRGKPIAVGHAE--ERGVVAAASYEARRFGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP+ L +P G+ ++ Y++ R+ I E + + T
Sbjct: 59 SSLKAKRLCPQ--LIFIP---GRMEV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
DV+ P + DE + ++ TE
Sbjct: 96 DVIE-----------------------PISLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+ + +A I +EI+ V + SAGI++NK LAK+ KP + +
Sbjct: 113 NKPGIPLAVDIAKEIKRKVRERLNLVASAGISYNKFLAKIASDYRKPDGLCTIHPAQALD 172
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
A L I+ + G + + + TL +L SL+ L F K + Y ARGI
Sbjct: 173 FVARLPIESFWGV-GPVTAKKMHTLGIHNGEQLRMQSLEMLTREF-GKVGTVYYDFARGI 230
Query: 301 DHEPVNARLVSKSIGC 316
D PV A + KS+GC
Sbjct: 231 DTRPVEAVRIRKSVGC 246
>gi|331001034|ref|ZP_08324667.1| DNA polymerase IV, partial [Parasutterella excrementihominis YIT
11859]
gi|329569467|gb|EGG51239.1| DNA polymerase IV [Parasutterella excrementihominis YIT 11859]
Length = 289
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 132/311 (42%), Gaps = 70/311 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +D+D F+ VE + NPSL GK +AV N+ +G + + +YEAR GV M
Sbjct: 7 RRILHLDLDAFFASVEQRDNPSLQGKAIAV-GLNSARGV-VASASYEARKFGVRSAMPSS 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A + CP L VP G+ D +Y+ A EV + S ++N++E+ SIDEA++D+TDV
Sbjct: 65 VAARLCPN--LIFVP---GRMD--EYKKASAEVFEIFSRYTNLIEQVSIDEAFLDVTDV- 116
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
W Y+
Sbjct: 117 ---------------------------------------WRDYGYA-------------- 123
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+ IA +I E++R V SAG+++NK LAK+ KP ++ ++
Sbjct: 124 -MEIAKLIKEDVRREV----GLIISAGVSYNKFLAKIASDWRKPDGLCVIHPNAALKFID 178
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L +K + + G + + +E L T +L + L L F S+ Y AR ID
Sbjct: 179 RLPVKAIWGV-GPVTSQKMEALGIFTGKDLREKDLSFLVEQFGSSGLSY-YNFARCIDDR 236
Query: 304 PVNARLVSKSI 314
PV + K +
Sbjct: 237 PVRTERIRKQV 247
>gi|387824674|ref|YP_005824145.1| DNA polymerase IV [Francisella cf. novicida 3523]
gi|332184140|gb|AEE26394.1| DNA polymerase IV [Francisella cf. novicida 3523]
Length = 351
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 131/312 (41%), Gaps = 71/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N +G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGINPNRGV-ISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A A I + TD V
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAAS----------------AIIRNIFYSFTDKV 100
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDF 182
P + DE Y D TD +N+
Sbjct: 101 E-----------------------PLSLDE-------------AYLDVTDVREYKNS--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V+
Sbjct: 122 -----ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQVNNFI 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L +KK+ + GK+ E ++++ T L+L++ SL L F K + LY ARGID+
Sbjct: 177 KDLPVKKLFGV-GKVCQEKLKSMNVETCLDLQRLSLAILIDKF-GKFGNNLYNYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KS+
Sbjct: 235 REVNPIHIRKSV 246
>gi|46123817|ref|XP_386462.1| hypothetical protein FG06286.1 [Gibberella zeae PH-1]
Length = 616
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 120/258 (46%), Gaps = 19/258 (7%)
Query: 10 DMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHC 69
D DCFY QV P L P+ V Q N + NY AR +G+T+ M EAK+ C
Sbjct: 71 DYDCFYAQVFENKKPELKNFPVGVKQKNC-----LATCNYNARARGLTKLMSVSEAKRKC 125
Query: 70 PEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLTDVVHERM 127
PE+ L V G+ D++ +R+ + + FS N ER DE ++D+TD++ +
Sbjct: 126 PELVL-----VDGE-DLTPFRDMSKTLFNFFKSFSWNNKAERLGFDEVFMDVTDIIEYNL 179
Query: 128 KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAI 187
+ L N+F F N+ E + + G V + + L +
Sbjct: 180 ACLN---LEFLENSFF--FLSKNDPERGFQCDLTSVAGCVEGTASPTPDTKEPAYLRLVL 234
Query: 188 AGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSI 247
+ + +R V K F + GI+ NK+L+KLV +KP+ Q+ L ++ + A +
Sbjct: 235 GSHLAQFLRLQVEEKHGFTSTCGISINKMLSKLVGSKNKPRNQTTLLATTEDEVIAFVDT 294
Query: 248 KKVRHLGGKLGDEVVETL 265
K+R + G LG + V+ L
Sbjct: 295 HKLRKIPG-LGFKTVQAL 311
>gi|393723669|ref|ZP_10343596.1| DNA polymerase IV [Sphingomonas sp. PAMC 26605]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 9/234 (3%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D + ++ TED L A I E+IRA + ++T+ SAG+++NK +AKL +KP
Sbjct: 113 DEAYLDVTEDRHGLGSAKAIAEQIRARIKAETRLTASAGVSYNKFIAKLASDQNKPDGIC 172
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
++P + S A+L +K+ H G + + L T +L L L +HF A
Sbjct: 173 VIPPARGSAFVASLPVKRF-HGVGPVTATRMAALGIETGADLRDRPLAFLHAHFGSY-AD 230
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDL 351
+LY ARGIDH PV + +KS+G + F +T +A+ D+ + +A+ R+E
Sbjct: 231 YLYGAARGIDHRPVRSNRATKSVGAERTF--ETDIASPADLHAALDRVAEAALVRIER-- 286
Query: 352 TLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAP 405
+ R + +T+ + +D + + +RS++ ++ + V ++++ P
Sbjct: 287 --HGVRGRTMTLKL-RFSDFRTITRARSLSRGAFDRESFVTGGRELLDAQLPVP 337
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 9/121 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + +PSL G+P+AV + G + A +YEAR GV M
Sbjct: 13 RKIIHIDMDAFYASVEQRDDPSLRGRPVAV--GGSRARGVVAAASYEARVFGVRSAMPSV 70
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A + CP +L VP + D+ Y +++ A+ +++++ +E S+DEAY+D+T+
Sbjct: 71 TALRRCP--DLVFVPP---RFDV--YGAISQQIRAIFADYTDQIEPLSLDEAYLDVTEDR 123
Query: 124 H 124
H
Sbjct: 124 H 124
>gi|229157727|ref|ZP_04285802.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus ATCC 4342]
gi|228625684|gb|EEK82436.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus ATCC 4342]
Length = 412
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I + ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQVLLTELQLPCSIGIAPN 153
>gi|365885711|ref|ZP_09424698.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 375]
gi|365285650|emb|CCD97229.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 375]
Length = 368
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 118/251 (47%), Gaps = 15/251 (5%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D + ++ T++ Q + +A I +IRA + ++T + SAGI++NK LAKL KP Q
Sbjct: 116 DEAYLDVTDNLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQY 175
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
++ + L + K +G + L T L++ SL LQ HF K S
Sbjct: 176 VISPEMGAAFVEGLPVGKFHGIGPATAAK-FNALGIHTGLDIRNQSLPFLQQHF-GKAGS 233
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDL 351
+ Y+I+RGIDH PV A + KSIG F L + ++ +Q L D+V E
Sbjct: 234 YYYWISRGIDHRPVRANRIRKSIGAENTFAAD--LTEFEPMAAELQPLIDKVWRHCEA-- 289
Query: 352 TLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLT 411
T N+ R L V F D ++ + SRS+ ++ +S+ ++ P
Sbjct: 290 TGNRGRTVTLKVKF---ADFEIITRSRSVVTVVATRAELERLSLALLQAELPLP------ 340
Query: 412 PPLLFLGLSAS 422
P+ LG+S S
Sbjct: 341 KPVRLLGVSLS 351
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + NP L GKP+AV + + G + A +YEAR GV M
Sbjct: 16 RKIIHIDMDAFYASVEQRDNPELRGKPVAV--GGSRERGVVAAASYEARKFGVRSAMPSV 73
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
AK+ CP++ K Y+ +++ A+ +E + ++E S+DEAY+D+TD
Sbjct: 74 TAKRLCPDLIFV-------KPRFEVYKAISQQIRAIFAEHTPVIEPLSLDEAYLDVTD 124
>gi|67538900|ref|XP_663224.1| hypothetical protein AN5620.2 [Aspergillus nidulans FGSC A4]
gi|40743523|gb|EAA62713.1| hypothetical protein AN5620.2 [Aspergillus nidulans FGSC A4]
gi|259484911|tpe|CBF81536.1| TPA: DNA polymerase iota, putative (AFU_orthologue; AFUA_4G11140)
[Aspergillus nidulans FGSC A4]
Length = 573
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 134/284 (47%), Gaps = 40/284 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII D DCFY V P L PLAV Q ++ NYEAR +G+ +
Sbjct: 11 RIILHFDYDCFYASVFEAEQPILKTLPLAVQQKQI-----VVTCNYEARRRGLRKLQLIK 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVL--SEFSNIVERASIDEAYIDLTD 121
EAKQ CP++ + + G+ D++K+R+A +++ S + VER DE ++D+TD
Sbjct: 66 EAKQICPDVVI-----ILGE-DLTKFRDASKDLYLFFRRSIWGERVERLGFDEIFMDVTD 119
Query: 122 VVHERMKSIGHIAASQLSNTFV--------VGFGPDNNDEDARKAGVMEWLGQVYSDTDT 173
++ + G + + L+++F VGF D R + G+ S+ DT
Sbjct: 120 MI---TYNAGLLNPNDLTHSFFHLDSRDPTVGFAFDATAVYGRTYP-NDRSGKPLSEADT 175
Query: 174 SLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
L L +A +R+ + ++ + +AGI+ +K+LAK+V HKP Q+ L
Sbjct: 176 QL------HLRLLLASHFAGYLRSQLENQKGYTATAGISTSKLLAKVVGSAHKPNNQTTL 229
Query: 234 --PQSSVSMLYANL-------SIKKVRHLGGKLGDEVVETLQCS 268
P SS +N+ I+ + +G KL +++ + S
Sbjct: 230 LPPYSSTGDCESNVLRFLDSREIRAIPGIGSKLSRKLISHITAS 273
>gi|408399765|gb|EKJ78858.1| hypothetical protein FPSE_01001 [Fusarium pseudograminearum CS3096]
Length = 551
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 119/258 (46%), Gaps = 19/258 (7%)
Query: 10 DMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHC 69
D DCFY QV P L P+ V Q N + NY AR +G+T+ M EAK+ C
Sbjct: 6 DYDCFYAQVFENKKPELKKFPVGVKQKNC-----LATCNYNARARGLTKLMSVSEAKRKC 60
Query: 70 PEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLTDVVHERM 127
PE+ L V G+ D++ +R+ + + FS N ER DE ++D+TD++ +
Sbjct: 61 PELVL-----VDGE-DLTPFRDMSKTLFNFFKSFSWNNKAERLGFDEVFMDVTDIIEYNL 114
Query: 128 KSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAI 187
+ L N+F F N+ E + + G V + + L +
Sbjct: 115 ACLN---LEFLENSFF--FLSKNDPERGFQCDLTSVAGCVEGTASPTPDTKEPAYLRLVL 169
Query: 188 AGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSI 247
+ + +R V K F + GI+ NK+L+KLV +KP+ Q+ L ++ + A +
Sbjct: 170 GSHLAQFLRLQVEEKHGFTSTCGISTNKMLSKLVGSKNKPRNQTTLLATTEDEVIAFVDT 229
Query: 248 KKVRHLGGKLGDEVVETL 265
K+R + G LG + V L
Sbjct: 230 HKLRKIPG-LGFKTVHAL 246
>gi|449094884|ref|YP_007427375.1| DNA polymerase IV [Bacillus subtilis XF-1]
gi|449028799|gb|AGE64038.1| DNA polymerase IV [Bacillus subtilis XF-1]
Length = 428
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +L GKP+AV + G ++ +YEAR +GV M
Sbjct: 19 GRIIFHIDMNSFYASVEMAYARALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 78
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+HCP EL +P + +YR++ R + +L E++++VE SIDE Y+D+TD
Sbjct: 79 WQAKRHCP--ELIVLPP-----NFDRYRSSSRAMFTILREYTDLVEPVSIDEGYMDMTD 130
>gi|372223245|ref|ZP_09501666.1| DNA polymerase IV [Mesoflavibacter zeaxanthinifaciens S86]
Length = 365
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 143/350 (40%), Gaps = 82/350 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG-----IIAVNYEARHKGVTR 58
R I +DMD FY VE K NP L GKP+AV GGG + A +YEAR GV
Sbjct: 8 RKIIHVDMDAFYASVEQKDNPELKGKPIAV-------GGGSKRGVVSAASYEARKYGVRS 60
Query: 59 HMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYID 118
M G A+++CP EL V K +Y+ ++ I + + +
Sbjct: 61 AMSGYLAQKNCP--ELIFV-----KPRFDRYKEISQQ----------------IRQVFFE 97
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
TD+V P + DE Y D + N
Sbjct: 98 YTDLVE-----------------------PLSLDE-------------AYLDVTQNKKGN 121
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
A +I +EIR +L KT SAGI+ NK +AK+ +KP Q + V
Sbjct: 122 PS-------ATLIAQEIRQKILDKTGLTASAGISINKFIAKIASDYNKPNGQKTVNPEEV 174
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
+ L I+K + GK+ E + L T +L+K SL+ L F K+ Y + R
Sbjct: 175 LEFLSALDIRKFYGV-GKVTAEKMYQLGIFTGADLKKKSLEFLNQEF-GKSGQHYYNVVR 232
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
GI V KS+G + F L++ + ++ +A E+ +RL+
Sbjct: 233 GIHLSTVKPSRTPKSVGAERTFS--ENLSSEIFMLQRLENIAQELEKRLK 280
>gi|38372183|sp|Q818U9.1|DPO4_BACCR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|29897783|gb|AAP11058.1| DNA polymerase IV [Bacillus cereus ATCC 14579]
Length = 415
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 12 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 71
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 72 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDC 124
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 125 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 156
>gi|310794618|gb|EFQ30079.1| impB/mucB/samB family protein [Glomerella graminicola M1.001]
Length = 561
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 130/275 (47%), Gaps = 26/275 (9%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII D DCFY V +P L PL V Q N + NY AR +GV + M
Sbjct: 15 RIILHFDYDCFYASVYENRDPRLKALPLGVKQKNI-----LATCNYVARKRGVKKLMLIV 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLTD 121
+AK+ CP++ + + G+ D++ +R+ + + L +S N ER DE ++D+TD
Sbjct: 70 DAKKLCPDLVI-----IDGE-DLTPFRDMSKRLFRFLRGYSWNNKAERLGFDEVFMDVTD 123
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNND-EDARKAGVMEWLGQVYSDT-DTSLMENT 179
++ M I + LS +F F D E+ + + G +Y T + +EN
Sbjct: 124 IIDYNMFCINR---ASLSESF---FHLSKQDPENGFICNLTKVAGCIYGMTPEPGDLENP 177
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL---PQS 236
+F L +A + +R + F S G++ NK+L+KL ++KP+ Q+ L S
Sbjct: 178 -NFVRLLLASHLAFHLRMKLEEDLGFTASVGVSTNKLLSKLAGSVNKPRNQTTLMSVDDS 236
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTML 271
V+ SI+KV +G K V+E ST L
Sbjct: 237 VVAEFMDTHSIRKVPGIGFKTS-RVLEGRYLSTPL 270
>gi|299537820|ref|ZP_07051109.1| DNA polymerase IV [Lysinibacillus fusiformis ZC1]
gi|424735572|ref|ZP_18164035.1| DNA polymerase IV [Lysinibacillus fusiformis ZB2]
gi|298726799|gb|EFI67385.1| DNA polymerase IV [Lysinibacillus fusiformis ZC1]
gi|422950229|gb|EKU44598.1| DNA polymerase IV [Lysinibacillus fusiformis ZB2]
Length = 412
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 7/124 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE +PSL GKP+A+ + G ++ +YEAR G+ M
Sbjct: 5 GRVILHVDMNSFYASVEQAHDPSLKGKPIAIAGNPKERRGILVTCSYEARALGIYTTMTV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CPE+ L +P D KYR+A +E+ +L ++ +VE SIDE Y+D+T++
Sbjct: 65 HEAKRKCPELLL--LPP-----DFQKYRHASKEMFTILRSYTPLVEPVSIDEGYLDVTEL 117
Query: 123 VHER 126
ER
Sbjct: 118 SKER 121
Score = 48.9 bits (115), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 115/265 (43%), Gaps = 30/265 (11%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I +EI+A +L++ CS GIA NK LAK + KP ++L + + + +
Sbjct: 126 IAQEIQARILAELDLPCSIGIAPNKFLAKTASDMKKPMGITVLRIRDIEQQLWHREVVNM 185
Query: 251 RHLGG----KLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVN 306
+G KL + + T+ + + E+F +KQ+ K L A G+D V+
Sbjct: 186 HGIGASTAKKLNAQGIFTI--GDLAKTEEFKMKQILG----KNGVRLRARANGVDQRMVD 239
Query: 307 ARLV--SKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVS 364
+ +KS+G P + + + I+ L +V ER L+ +R TVS
Sbjct: 240 PEAIFDTKSVGNSTTLPED--VTDVRTLHKTIEGLCKKVVER------LDAKRLAGSTVS 291
Query: 365 F-TQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASK 423
++ D ++ S++++ Y+ ++I +++ + +K P+ LG++ S
Sbjct: 292 IQIRDADWHNHTRSKTMSNVLYRYEEIYDIACTLFDKHWDESPVR-------LLGVTVSN 344
Query: 424 FSPLGSHPSIQQFFKPQDHP--EPM 446
+ F Q+H EP+
Sbjct: 345 VVDRKDYSQQLSIFDFQEHAKDEPI 369
>gi|225428993|ref|XP_002264518.1| PREDICTED: DNA polymerase kappa-like [Vitis vinifera]
Length = 661
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 178/433 (41%), Gaps = 107/433 (24%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG---IIAVNYEARHKGVTRH 59
SRI +DMD FY VE NPSL G+P+AV GG I NYEAR GV
Sbjct: 104 SRIWLHVDMDAFYAAVETLDNPSLRGRPMAV--------GGMSMISTANYEARKFGVRAA 155
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M G A++ CPE L VP+ D KY Y DL
Sbjct: 156 MPGFIARKLCPE--LIFVPT-----DFKKY------------------------TYYSDL 184
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
T V ++ +AAS L + Y D + + N
Sbjct: 185 TRKVFQKYDP-NFMAAS---------------------------LDEAY--LDITEVCNE 214
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
D +G I EE+R +V T CSAG+A N++LAK+ ++KP Q +LP + ++
Sbjct: 215 RDL----TSGEIAEELRTSVHEVTGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPSNRMA 270
Query: 240 ML--YANLSIKKVRHLGGKLGDEVVETL----QCSTMLELEKFSLKQLQSHFEEKTASWL 293
++ ++L I+K+ + GK+ + ++ + C ML+ F L + F +A +
Sbjct: 271 VMTFISSLPIRKIGGI-GKVTEHILSGVFGINTCEEMLQKGGF----LCALFSRSSADFF 325
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
+ G+ KSI + F + D + Q+LA E+ E L D+
Sbjct: 326 LSVGLGLGKTDTPQVRFRKSISNERTF------SATDDTALLYQKLA-ELSEMLSIDMQK 378
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASY--KLQDIVEVSMQVINKTNSAPPISDLT 411
+ LT+ + SR++ + Y +DI+ +++++N ++L
Sbjct: 379 EGLSGRTLTLKLKTAS---FEVRSRAVTMQKYICSREDILNHALKLLN--------AELP 427
Query: 412 PPLLFLGLSASKF 424
L +GL S F
Sbjct: 428 LSLRLIGLRISHF 440
>gi|228954432|ref|ZP_04116457.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|423503165|ref|ZP_17479757.1| DNA polymerase IV [Bacillus cereus HD73]
gi|449091105|ref|YP_007423546.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar kurstaki str. HD73]
gi|228805089|gb|EEM51683.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|402459386|gb|EJV91123.1| DNA polymerase IV [Bacillus cereus HD73]
gi|449024862|gb|AGE80025.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 412
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|229081405|ref|ZP_04213907.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock4-2]
gi|228701895|gb|EEL54379.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock4-2]
Length = 412
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|75761968|ref|ZP_00741887.1| DNA polymerase IV [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74490548|gb|EAO53845.1| DNA polymerase IV [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 415
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 12 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 71
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 72 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 123
>gi|161511201|ref|NP_833857.2| DNA polymerase IV [Bacillus cereus ATCC 14579]
gi|218232396|ref|YP_002368949.1| DNA polymerase IV [Bacillus cereus B4264]
gi|228960414|ref|ZP_04122066.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|229047840|ref|ZP_04193419.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus AH676]
gi|229111620|ref|ZP_04241171.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock1-15]
gi|229129426|ref|ZP_04258397.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus BDRD-Cer4]
gi|229146720|ref|ZP_04275086.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus BDRD-ST24]
gi|296504637|ref|YP_003666337.1| DNA polymerase IV [Bacillus thuringiensis BMB171]
gi|423630871|ref|ZP_17606618.1| DNA polymerase IV [Bacillus cereus VD154]
gi|423640771|ref|ZP_17616389.1| DNA polymerase IV [Bacillus cereus VD166]
gi|423650011|ref|ZP_17625581.1| DNA polymerase IV [Bacillus cereus VD169]
gi|423657075|ref|ZP_17632374.1| DNA polymerase IV [Bacillus cereus VD200]
gi|218160353|gb|ACK60345.1| putative DNA-damage-inducible protein P [Bacillus cereus B4264]
gi|228636740|gb|EEK93204.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus BDRD-ST24]
gi|228654031|gb|EEL09898.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus BDRD-Cer4]
gi|228672002|gb|EEL27295.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock1-15]
gi|228723501|gb|EEL74867.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus AH676]
gi|228799275|gb|EEM46240.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|296325689|gb|ADH08617.1| DNA polymerase IV [Bacillus thuringiensis BMB171]
gi|401264238|gb|EJR70350.1| DNA polymerase IV [Bacillus cereus VD154]
gi|401279832|gb|EJR85754.1| DNA polymerase IV [Bacillus cereus VD166]
gi|401283291|gb|EJR89188.1| DNA polymerase IV [Bacillus cereus VD169]
gi|401289818|gb|EJR95522.1| DNA polymerase IV [Bacillus cereus VD200]
Length = 412
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|228909980|ref|ZP_04073801.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis IBL 200]
gi|423426282|ref|ZP_17403313.1| DNA polymerase IV [Bacillus cereus BAG3X2-2]
gi|423437600|ref|ZP_17414581.1| DNA polymerase IV [Bacillus cereus BAG4X12-1]
gi|228849815|gb|EEM94648.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis IBL 200]
gi|401111029|gb|EJQ18928.1| DNA polymerase IV [Bacillus cereus BAG3X2-2]
gi|401120755|gb|EJQ28551.1| DNA polymerase IV [Bacillus cereus BAG4X12-1]
Length = 412
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|206971319|ref|ZP_03232270.1| putative DNA-damage-inducible protein P [Bacillus cereus AH1134]
gi|229071653|ref|ZP_04204870.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus F65185]
gi|229192358|ref|ZP_04319322.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus ATCC 10876]
gi|365159068|ref|ZP_09355253.1| DNA polymerase IV [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412049|ref|ZP_17389169.1| DNA polymerase IV [Bacillus cereus BAG3O-2]
gi|423432166|ref|ZP_17409170.1| DNA polymerase IV [Bacillus cereus BAG4O-1]
gi|206734091|gb|EDZ51262.1| putative DNA-damage-inducible protein P [Bacillus cereus AH1134]
gi|228591138|gb|EEK48993.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus ATCC 10876]
gi|228711448|gb|EEL63406.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus F65185]
gi|363625756|gb|EHL76772.1| DNA polymerase IV [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104117|gb|EJQ12094.1| DNA polymerase IV [Bacillus cereus BAG3O-2]
gi|401116922|gb|EJQ24760.1| DNA polymerase IV [Bacillus cereus BAG4O-1]
Length = 412
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|296083048|emb|CBI22452.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 178/433 (41%), Gaps = 107/433 (24%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG---IIAVNYEARHKGVTRH 59
SRI +DMD FY VE NPSL G+P+AV GG I NYEAR GV
Sbjct: 104 SRIWLHVDMDAFYAAVETLDNPSLRGRPMAV--------GGMSMISTANYEARKFGVRAA 155
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M G A++ CPE L VP+ D KY Y DL
Sbjct: 156 MPGFIARKLCPE--LIFVPT-----DFKKY------------------------TYYSDL 184
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
T V ++ +AAS L + Y D + + N
Sbjct: 185 TRKVFQKYDP-NFMAAS---------------------------LDEAY--LDITEVCNE 214
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
D +G I EE+R +V T CSAG+A N++LAK+ ++KP Q +LP + ++
Sbjct: 215 RDL----TSGEIAEELRTSVHEVTGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPSNRMA 270
Query: 240 ML--YANLSIKKVRHLGGKLGDEVVETL----QCSTMLELEKFSLKQLQSHFEEKTASWL 293
++ ++L I+K+ + GK+ + ++ + C ML+ F L + F +A +
Sbjct: 271 VMTFISSLPIRKIGGI-GKVTEHILSGVFGINTCEEMLQKGGF----LCALFSRSSADFF 325
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTL 353
+ G+ KSI + F + D + Q+LA E+ E L D+
Sbjct: 326 LSVGLGLGKTDTPQVRFRKSISNERTF------SATDDTALLYQKLA-ELSEMLSIDMQK 378
Query: 354 NKRRAQLLTVSFTQETDGKVNSCSRSIALASY--KLQDIVEVSMQVINKTNSAPPISDLT 411
+ LT+ + SR++ + Y +DI+ +++++N ++L
Sbjct: 379 EGLSGRTLTLKLKTAS---FEVRSRAVTMQKYICSREDILNHALKLLN--------AELP 427
Query: 412 PPLLFLGLSASKF 424
L +GL S F
Sbjct: 428 LSLRLIGLRISHF 440
>gi|393758257|ref|ZP_10347080.1| DNA-directed DNA polymerase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393165045|gb|EJC65095.1| DNA-directed DNA polymerase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 401
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/386 (26%), Positives = 145/386 (37%), Gaps = 96/386 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAV----------VQYNTWK--------GGGII 45
R IA +DMD FY VE P L G+P+ + + +W+ G G+
Sbjct: 23 RRIAHVDMDAFYASVELLRYPHLRGRPVVIGGRSADAPRQLPDGSWQHARLADYVGRGVA 82
Query: 46 AVN-YEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS 104
+ YEAR GV M +A Q P+ L AD YR+ R ++ S
Sbjct: 83 TTSTYEARQLGVFSAMGLMKAAQLAPDAILL-------PADFQAYRHYSRLFKQAVATVS 135
Query: 105 NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL 164
+ +E IDE
Sbjct: 136 DHIEDRGIDE-------------------------------------------------- 145
Query: 165 GQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGL 224
+Y D L TED LA E+IR AV T CS GI NK+L+K+ L
Sbjct: 146 --IYVD----LSHKTEDSHALA------EQIRQAVNQATGLTCSVGITPNKLLSKIASEL 193
Query: 225 HKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH 284
+KP +L V L++ K+ +G K ++ E L + EL ++LQ H
Sbjct: 194 NKPNGACVLTMDDVPTRIWPLAVGKINGIGPKSVLKLTE-LGIGQIGELAATPAEKLQEH 252
Query: 285 FEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSH--WIQELADE 342
F + A WL +A G D P+ KSI F + L R D S W+ E
Sbjct: 253 FGLRYAQWLMAVAHGQDDRPLTTDRTPKSISRETTF--ERDLHVRMDRSRLSWVLE---S 307
Query: 343 VCERLEDDLTLNKRRAQLLTVSFTQE 368
+CE+LE DL + AQ + + E
Sbjct: 308 LCEKLEQDLRKSAMCAQTIGIKLKFE 333
>gi|386389668|ref|ZP_10074481.1| DNA polymerase IV [Haemophilus paraphrohaemolyticus HK411]
gi|385695171|gb|EIG25737.1| DNA polymerase IV [Haemophilus paraphrohaemolyticus HK411]
Length = 359
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 124/299 (41%), Gaps = 69/299 (23%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R I IDMDCFY VE + NPSL GKP+AV + G + NYEAR G+ M
Sbjct: 7 TRKIIHIDMDCFYAAVEMRENPSLKGKPVAVGGKAN-QRGVLTTCNYEARKFGLHSAMST 65
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A + CP + L V ++ Y+ ++ + ++ I+E S+DEAY+D+TD
Sbjct: 66 ATAFKLCPNLILLPV-------NMPLYKLVSAQIHQIFRRYTQIIEPLSLDEAYLDVTDC 118
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
+++S + T + EN
Sbjct: 119 -------------------------------------------KLHSGSATWIAEN---- 131
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
IR A+ + SAG+A K LAK+ +KP Q ++P V
Sbjct: 132 ------------IRQAIWDELHLTASAGVAPLKFLAKIASDQNKPNGQFVIPPEEVQNFV 179
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
NL +KK+ + GK+ +E + + T ++++ S + F K L+ GID
Sbjct: 180 KNLPLKKIPGV-GKVTEEKLAQMGLLTCQDVQQNSQAMIYQEF-GKFGQRLWNFCHGID 236
>gi|423385650|ref|ZP_17362906.1| DNA polymerase IV [Bacillus cereus BAG1X1-2]
gi|423527994|ref|ZP_17504439.1| DNA polymerase IV [Bacillus cereus HuB1-1]
gi|401635706|gb|EJS53461.1| DNA polymerase IV [Bacillus cereus BAG1X1-2]
gi|402451657|gb|EJV83476.1| DNA polymerase IV [Bacillus cereus HuB1-1]
Length = 412
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPVEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|317475849|ref|ZP_07935106.1| impB/mucB/samB family protein [Bacteroides eggerthii 1_2_48FAA]
gi|316908009|gb|EFV29706.1| impB/mucB/samB family protein [Bacteroides eggerthii 1_2_48FAA]
Length = 365
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 135/327 (41%), Gaps = 92/327 (28%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD FY VE + NP L GKP+AV + G + A +YEAR GV M
Sbjct: 1 MTGRKIIHIDMDAFYASVEQRDNPELRGKPVAVGHAE--ERGVVAAASYEARRFGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP+ L +P G+ D+ Y++ R+ I E + + T
Sbjct: 59 SSQKAKRLCPQ--LVFIP---GRMDV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
DV+ P + DE + ++ TE
Sbjct: 96 DVIE-----------------------PISLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKL---------VCGLHKPQKQS 231
+ + +A I +EI+ V + SAG+++NK LAK+ +C +H Q
Sbjct: 113 NKPGIPLAVDIAKEIKRKVRERLSLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALE 172
Query: 232 ILPQSSVSMLY--ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKT 289
+ + + + ++ KK+ LG G+++ CS + + +F K
Sbjct: 173 FIARLPIESFWGVGPVTAKKMHALGIHNGEQL---RACSQAMLMREFG----------KV 219
Query: 290 ASWLYYIARGIDHEPVNARLVSKSIGC 316
Y ARGID PV A V KS+GC
Sbjct: 220 GGVYYDFARGIDLRPVEAVRVRKSVGC 246
>gi|228902658|ref|ZP_04066808.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis IBL 4222]
gi|228967188|ref|ZP_04128224.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar sotto str. T04001]
gi|402564442|ref|YP_006607166.1| DNA polymerase IV [Bacillus thuringiensis HD-771]
gi|423358814|ref|ZP_17336317.1| DNA polymerase IV [Bacillus cereus VD022]
gi|434377254|ref|YP_006611898.1| DNA polymerase IV [Bacillus thuringiensis HD-789]
gi|228792557|gb|EEM40123.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228856973|gb|EEN01483.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis IBL 4222]
gi|401084686|gb|EJP92932.1| DNA polymerase IV [Bacillus cereus VD022]
gi|401793094|gb|AFQ19133.1| DNA polymerase IV [Bacillus thuringiensis HD-771]
gi|401875811|gb|AFQ27978.1| DNA polymerase IV [Bacillus thuringiensis HD-789]
Length = 412
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 120
>gi|229180426|ref|ZP_04307769.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus 172560W]
gi|228603173|gb|EEK60651.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus 172560W]
Length = 412
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|228941308|ref|ZP_04103861.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228974240|ref|ZP_04134810.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228980831|ref|ZP_04141136.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis Bt407]
gi|384188217|ref|YP_005574113.1| DNA polymerase IV [Bacillus thuringiensis serovar chinensis CT-43]
gi|410676535|ref|YP_006928906.1| DNA polymerase IV [Bacillus thuringiensis Bt407]
gi|452200607|ref|YP_007480688.1| DNA polymerase IV [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
gi|228779000|gb|EEM27262.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis Bt407]
gi|228785580|gb|EEM33589.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228818467|gb|EEM64539.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326941926|gb|AEA17822.1| DNA polymerase IV [Bacillus thuringiensis serovar chinensis CT-43]
gi|409175664|gb|AFV19969.1| DNA polymerase IV [Bacillus thuringiensis Bt407]
gi|452106000|gb|AGG02940.1| DNA polymerase IV [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
Length = 412
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|340782658|ref|YP_004749265.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340556810|gb|AEK58564.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 142/354 (40%), Gaps = 83/354 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
+ R I +DMD F+ VE + P L G P+ V GG G++A +YEAR
Sbjct: 9 LAIRKIIHVDMDAFFAAVEQRDRPELRGLPVIV-------GGDPNVRGVVATCSYEARRF 61
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
G+ M A+ CP+ VR + D YR R+V+ +I
Sbjct: 62 GIRSAMSAARARSLCPQAIF-----VRPRMD--AYREVSRQVM-------------TILR 101
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
+Y L + P + DE +L + TD +
Sbjct: 102 SYTALVE--------------------------PLSLDE--------AFLDVTAATTDGT 127
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
L A I EI + +T SAG+++NK+LAKL KP ++P
Sbjct: 128 L------------AVEIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIP 175
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
A L + K+ H G + + + T+L+L SL+ L +HF K+ W Y
Sbjct: 176 PERGLAFLAPLPVGKL-HGVGPATVKKLSAMGVETVLDLRNLSLEFLVTHF-GKSGGWFY 233
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
+AR ID PV KS+G + F LA R + +QE+A +V RL+
Sbjct: 234 DVARAIDERPVQPSRQRKSVGTERTF--SKNLADRSVMLTTLQEMAAQVAARLQ 285
>gi|340521292|gb|EGR51527.1| hypothetical protein TRIREDRAFT_75518 [Trichoderma reesei QM6a]
Length = 1103
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 106/440 (24%), Positives = 179/440 (40%), Gaps = 77/440 (17%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
+ I +D D F+C V K +P KP VV ++T G I + NY AR GV M
Sbjct: 345 KYIMHVDFDSFFCTVSLKGHPEYVDKP-CVVAHSTGAGSEIASCNYVARKFGVKNGMWMK 403
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A + CP++++ D Y R+ + E IV+ S+DEA +D+TDVV
Sbjct: 404 RALELCPDLKVL-------PYDFPAYEEVSRQFYEAIMETGGIVQSVSVDEALVDVTDVV 456
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+AA+Q +R GV E SL
Sbjct: 457 ---------LAAAQ-----------------SRGVGVSE----------GSLWREQAKVD 480
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
E+A+A +R + +T S GI N + AK+ KP Q L + +
Sbjct: 481 EMALA------LRNKIKEQTNCSVSVGIGGNILQAKIALRKAKPDGQFQLRPEQILEIIG 534
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L ++++ + +G ++ E L + +L S ++L + KT+ L+ ARGID
Sbjct: 535 DLKVEELPGVAYSIGGKL-EDLGVKLVKDLRDISKERLVAVLGPKTSEKLHDYARGIDRT 593
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
V + KS+ + R +E ++C+ LE L + + + LTV
Sbjct: 594 EVGEQPPRKSVSA------EVNWGIRFINQAEAEEFVYDLCKELEKRLVNEQVKGKHLTV 647
Query: 364 SFTQET------------DGKVNSCSRSIA--LASYKLQDIVEVSMQVINKTNSAPPISD 409
+ GK +S ++S A +A++ Q I + ++ ++ +P D
Sbjct: 648 KLMRRALDAPLDPTKHLGHGKCDSFNKSSAFGVATHDYQAIGKEAVSILRSFKFSP--GD 705
Query: 410 LTPPLLFLGLSASKFSPLGS 429
L +G+ +K P+ S
Sbjct: 706 LR----GIGVQMTKLEPIKS 721
>gi|408673241|ref|YP_006872989.1| DNA polymerase IV [Emticicia oligotrophica DSM 17448]
gi|387854865|gb|AFK02962.1| DNA polymerase IV [Emticicia oligotrophica DSM 17448]
Length = 355
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 101/402 (25%), Positives = 162/402 (40%), Gaps = 77/402 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ VE + L GKP+AV + + G + A +YEAR GV M
Sbjct: 3 RKIIHIDMDAFFASVEQRDFAELRGKPVAVG--GSSERGVVAAASYEARKFGVRSAMSSR 60
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AKQ CP + K Y+ RE I E +++ T +V
Sbjct: 61 IAKQKCPSLIFV-------KPRFEVYKQVSRE----------------IREIFLEYTPLV 97
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ TE+ +
Sbjct: 98 E-----------------------PLSLDE--------------------AYLDVTENLK 114
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+A A I +EI+ + KT SAG++ NK LAK+ KP ++ S
Sbjct: 115 GIATATEIAQEIKVRIKEKTTLTASAGVSVNKFLAKIASDYRKPDGLFVIKPSQAEAFVE 174
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L I K H G++ E + + T EL + SL+ L ++F K + + IARGID+
Sbjct: 175 KLEIAKF-HGIGRVTAEKMHKMGIFTGKELREKSLEFLVNNF-GKVGRYYHDIARGIDNR 232
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTV 363
VN + KS+G F L D+ H + ++ +++ R++ K + L +
Sbjct: 233 SVNPDSIRKSVGVENTF--DRDLTEPDDLYHELDDIIEQLWRRMQRANAFGK--SITLKI 288
Query: 364 SFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAP 405
F D + SR+ L ++ + +VS +++N P
Sbjct: 289 KF---ADFDTITRSRTTHLPVFEKDFLAKVSYEMLNNLFPLP 327
>gi|322515202|ref|ZP_08068201.1| DNA-directed DNA polymerase IV [Actinobacillus ureae ATCC 25976]
gi|322118812|gb|EFX91013.1| DNA-directed DNA polymerase IV [Actinobacillus ureae ATCC 25976]
Length = 356
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 97/408 (23%), Positives = 170/408 (41%), Gaps = 87/408 (21%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHM 60
T R I IDMDCFY +E + NP+L GKP+AV + +G G++ NYEAR G+ M
Sbjct: 3 TQRKIIHIDMDCFYAAIEMRENPALIGKPVAV--GGSVEGRGVLTTCNYEARKFGLHSAM 60
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + L VP ++ Y+ ++ + +++I+E S+DEAY+D+T
Sbjct: 61 PTAQALKRCPNLIL--VP-----VNMPLYKTVSEQIHQIFRRYTDIIEPLSLDEAYLDVT 113
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D Q S G W+ Q
Sbjct: 114 D-------------CQQCS-------------------GSATWIAQ-------------- 127
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
EIRAA+ + SAGIA K LAK+ +KP Q ++ +++
Sbjct: 128 -------------EIRAAIWHELHLTASAGIAPLKFLAKIASDQNKPNGQFVISPENMTA 174
Query: 241 LYANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+L +KK+ + GK+ +E + L C + +K + + F ++ L+ +
Sbjct: 175 FIYDLPLKKIPGV-GKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQR----LWDFS 229
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDL---TLN 354
ID+ + KS+ P T + + + EL ++ RL+ + +L
Sbjct: 230 HAIDNRKIEVNRPRKSLAVENTLP--TDIWHLSEAEQIVDELFKKLVFRLQRNWGKRSLQ 287
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
+ + + + F T + + ++L + +E+ QV +TN
Sbjct: 288 EFKKLAIKLKFGDFTQTTLERTTDGLSLERF-----IELLQQVWQRTN 330
>gi|456357588|dbj|BAM92033.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Agromonas oligotrophica S58]
Length = 357
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 118/251 (47%), Gaps = 15/251 (5%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D + ++ TE+ Q + +A I +IRA + ++T + SAGI++NK LAKL KP Q
Sbjct: 105 DEAYLDVTENLQGIPLARDIALQIRAKIKAETDLNASAGISYNKFLAKLASDHRKPNGQY 164
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
++ + L + K +G + L T L++ +L LQ HF K S
Sbjct: 165 VISPEMGAAFVEGLPVGKFHGIGPATTAK-FNALGIHTGLDIRNQTLPFLQQHF-GKAGS 222
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDL 351
+ Y+I+RG+D PV A + KS+G F T L + + + L D+V E
Sbjct: 223 YYYWISRGVDDRPVRANRIRKSVGAENTF--STDLTEFEPMKAELLPLIDKVWRHCEA-- 278
Query: 352 TLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLT 411
T NK R L V F D ++ + SRS+A A D+ +S+ ++ P
Sbjct: 279 TCNKGRTVTLKVKF---ADFEIMTRSRSVASAVGSRDDLERLSVALLQSEMPLP------ 329
Query: 412 PPLLFLGLSAS 422
P+ LG+S S
Sbjct: 330 KPVRLLGVSLS 340
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+R I IDMD FY VE + NP L GKP+AV + + G + A +YEAR GV M
Sbjct: 3 ATRKIIHIDMDAFYASVEQRDNPDLRGKPVAV--GGSRERGVVAAASYEARRFGVRSAMP 60
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
AK+ CP++ K Y+ +++ A+ +E + I+E S+DEAY+D+T+
Sbjct: 61 SVTAKRQCPDLIFV-------KPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYLDVTE 113
>gi|228998933|ref|ZP_04158516.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus mycoides Rock3-17]
gi|229006465|ref|ZP_04164118.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus mycoides Rock1-4]
gi|228754778|gb|EEM04170.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus mycoides Rock1-4]
gi|228760808|gb|EEM09771.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus mycoides Rock3-17]
Length = 412
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G I+ +YEAR GV M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLKGKPLAVAGNEKERKGVIVTCSYEAREYGVRTTMLL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CPE+ V + YR A E+ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPEL-------VVKHPNFKLYREASFEMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YGLGSPLEIAKMIQQTLLTELQLPCSIGIAPN 153
>gi|423401008|ref|ZP_17378181.1| DNA polymerase IV [Bacillus cereus BAG2X1-2]
gi|401653998|gb|EJS71541.1| DNA polymerase IV [Bacillus cereus BAG2X1-2]
Length = 412
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEARDYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQLVVMR-------PNFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|423478288|ref|ZP_17455003.1| DNA polymerase IV [Bacillus cereus BAG6X1-1]
gi|402428450|gb|EJV60547.1| DNA polymerase IV [Bacillus cereus BAG6X1-1]
Length = 412
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEARDYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQLVVMR-------PNFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|358059411|dbj|GAA94817.1| hypothetical protein E5Q_01471 [Mixia osmundae IAM 14324]
Length = 627
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 109/237 (45%), Gaps = 21/237 (8%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII +D+DCFY E +PSL G+PL + Q + +YEAR +GV +
Sbjct: 9 RIIINLDLDCFYVACERLADPSLIGRPLGIQQKQI-----LATTSYEARAQGVGKLCLVT 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAV--LSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ +R D+++YR R A+ L+ ER +DE + D+T
Sbjct: 64 EAKKRCPDL------IIRSGEDLTRYRAHSRRSFALVRLANAPYPTERLGMDEIFCDVTQ 117
Query: 122 VVHE---RMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
+ R+++ A+ + F ND +R+ W + T +E
Sbjct: 118 KIRAHLTRLETAQETVAT--DDRGRRWFALQENDLTSREVINGFWYDPLQLQGITLPLEC 175
Query: 179 TEDFQE---LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI 232
E Q IA +R + S+ F SAG+A KVL+KL +HKP KQS+
Sbjct: 176 PEPLQASPMTRIASHFAAYLRMRIHSELGFTVSAGVAPCKVLSKLASDMHKPDKQSV 232
>gi|115391279|ref|XP_001213144.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114194068|gb|EAU35768.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 597
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 129/272 (47%), Gaps = 33/272 (12%)
Query: 10 DMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHC 69
D DCFY V P L PLAV Q ++ NYEAR +G+ + EAKQ C
Sbjct: 39 DYDCFYASVFEVEQPFLKSLPLAVQQKQI-----VVTCNYEARRRGLRKLQLIKEAKQIC 93
Query: 70 PEIELCRVPSVRGKADISKYRNAGREVIAVLSEF--SNIVERASIDEAYIDLTDVVHERM 127
P++ + V G+ D++K+R+A + + L +F VER DE ++D+TD+V +
Sbjct: 94 PDVVI-----VLGE-DLTKFRDASKALYLFLRQFVWGEKVERLGFDEVFLDVTDMVAYNV 147
Query: 128 KSIGHIAASQLSNTFVVGFGPDNNDEDARKA-GVMEWLGQVYSDTDTSLME--NTEDFQE 184
+ + + L ++F F D D A + G Y ++L + + +
Sbjct: 148 ELLNE---NDLQHSF---FHLDPRDPTAGFVYNATQVCGPTYPVGSSALADPPSAWLYTR 201
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILP--------- 234
L +A + +R + + + + G++ +K+LAKLV +HKP Q ++LP
Sbjct: 202 LLVASHLAAYLRGQLEEQRGYTATVGVSTSKLLAKLVGNVHKPNSQTTLLPPYTTAPEST 261
Query: 235 -QSSVSMLYANLSIKKVRHLGGKLGDEVVETL 265
QS+V + I+KV +G KL ++ L
Sbjct: 262 AQSNVLAFLDSHDIRKVPGIGSKLAHKITSYL 293
>gi|120603928|ref|YP_968328.1| DNA-directed DNA polymerase [Desulfovibrio vulgaris DP4]
gi|120564157|gb|ABM29901.1| DNA-directed DNA polymerase [Desulfovibrio vulgaris DP4]
Length = 386
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 125/297 (42%), Gaps = 69/297 (23%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMD F+ VE +PSL G+P V+ + + G + A +YEAR GV M A++
Sbjct: 3 IDMDAFFASVEQLDDPSLRGRP--VIVGGSSERGVVSAASYEARRYGVRSAMPTVTARRL 60
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP V G+ +Y R V+AVL +FS +VE+AS+DEAY+D T + ER+
Sbjct: 61 CPHGVF-----VSGRR--HRYAEVSRMVMAVLHDFSPVVEQASVDEAYLDATGL--ERL- 110
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
FGP + K V E G +
Sbjct: 111 -----------------FGPVDEMAQRLKGRVREATGGL--------------------- 132
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
CS G+A K LAK+ ++KP ILP V+ A L +
Sbjct: 133 -----------------TCSVGLAPVKFLAKIASDVNKPDGVFILPSEDVAAFLATLPVG 175
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPV 305
++ +G ++ E ++ L T ++ + + + F K LY ARGID P+
Sbjct: 176 RIPGVGKRM-LESLDLLGVRTAGDVLRHPVSFWERRF-GKGGLVLYDRARGIDPRPL 230
>gi|423395553|ref|ZP_17372754.1| DNA polymerase IV [Bacillus cereus BAG2X1-1]
gi|401654964|gb|EJS72503.1| DNA polymerase IV [Bacillus cereus BAG2X1-1]
Length = 412
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITD 120
>gi|229152347|ref|ZP_04280540.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus m1550]
gi|228631309|gb|EEK87945.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus m1550]
Length = 412
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHEPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|423406429|ref|ZP_17383578.1| DNA polymerase IV [Bacillus cereus BAG2X1-3]
gi|401660423|gb|EJS77905.1| DNA polymerase IV [Bacillus cereus BAG2X1-3]
Length = 412
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPKL-VVRRP------NFALYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|237800205|ref|ZP_04588666.1| DNA polymerase IV, partial [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331023062|gb|EGI03119.1| DNA polymerase IV [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 220
Score = 90.5 bits (223), Expect = 5e-15, Method: Composition-based stats.
Identities = 73/280 (26%), Positives = 113/280 (40%), Gaps = 69/280 (24%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPDLAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALTLCPDLTIV-------KPRMEAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D GH + S
Sbjct: 113 DA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V + SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSKQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSL 278
A+L + K+ +G D++ + L C+ + K +L
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGILDCADLRSRSKLAL 213
>gi|384181967|ref|YP_005567729.1| DNA polymerase IV [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|324328051|gb|ADY23311.1| DNA polymerase IV [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 412
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|228987338|ref|ZP_04147458.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228772310|gb|EEM20756.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 412
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|228992888|ref|ZP_04152813.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus pseudomycoides DSM 12442]
gi|228766937|gb|EEM15575.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus pseudomycoides DSM 12442]
Length = 417
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G I+ +YEAR GV M
Sbjct: 14 GRVILHVDMNCFFASVEIAHDPSLKGKPLAVAGNEKERKGVIVTCSYEAREYGVRTTMLL 73
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CPE+ V + YR A E+ +LS F+ ++ SIDE Y+D+TD
Sbjct: 74 WEAKRLCPEL-------VVKHPNFKLYREASFEMFQILSRFTEKIQPVSIDEGYLDITDC 126
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 127 YGLGSPLEIAKMIQQALLTELELPCSIGIAPN 158
>gi|161511022|ref|NP_980507.2| DNA polymerase IV [Bacillus cereus ATCC 10987]
gi|402555722|ref|YP_006596993.1| DNA polymerase IV [Bacillus cereus FRI-35]
gi|401796932|gb|AFQ10791.1| DNA polymerase IV [Bacillus cereus FRI-35]
Length = 412
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|329955352|ref|ZP_08296260.1| DNA polymerase IV [Bacteroides clarus YIT 12056]
gi|328525755|gb|EGF52779.1| DNA polymerase IV [Bacteroides clarus YIT 12056]
Length = 366
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 134/327 (40%), Gaps = 92/327 (28%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD FY VE + NP L GKP+AV + G + A +YEAR GV M
Sbjct: 2 MAERKIIHIDMDAFYASVEQRDNPELRGKPVAVGHAE--ERGVVAAASYEARRFGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP+ L +P G+ D+ Y++ R I E + + T
Sbjct: 60 SSQKAKRLCPQ--LIFIP---GRMDM--YKSVSRR----------------IHEIFHEYT 96
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 97 DIIE-----------------------PISLDE--------------------AFLDVTE 113
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKL---------VCGLHKPQKQS 231
+ + +A I +EI+ V + SAGI++NK LAK+ +C +H Q
Sbjct: 114 NKPGMPLAVDIAKEIKRKVRERLSLVASAGISYNKFLAKIASDYRKPDGLCTIHPDQALG 173
Query: 232 ILPQSSVSMLY--ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKT 289
+ + + + ++ +K+ LG G+++ CS + L +F K
Sbjct: 174 FIARLPIESFWGVGPVTARKMHALGIHNGEQL---RACSQAMLLREFG----------KV 220
Query: 290 ASWLYYIARGIDHEPVNARLVSKSIGC 316
S Y ARGID PV A V KSIGC
Sbjct: 221 GSIYYDFARGIDLRPVEAVRVRKSIGC 247
>gi|218129803|ref|ZP_03458607.1| hypothetical protein BACEGG_01383 [Bacteroides eggerthii DSM 20697]
gi|217987913|gb|EEC54238.1| ImpB/MucB/SamB family protein [Bacteroides eggerthii DSM 20697]
Length = 365
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 135/327 (41%), Gaps = 92/327 (28%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD FY VE + NP L GKP+AV + G + A +YEAR GV M
Sbjct: 1 MTGRKIIHIDMDAFYASVEQRDNPELRGKPVAVGHAE--ERGVVAAASYEARRFGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP+ L +P G+ D+ Y++ R+ I E + + T
Sbjct: 59 SSQKAKRLCPQ--LVFIP---GRMDV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
DV+ P + DE + ++ TE
Sbjct: 96 DVIE-----------------------PISLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKL---------VCGLHKPQKQS 231
+ + +A I +EI+ V + SAG+++NK LAK+ +C +H Q
Sbjct: 113 NKPGIPLAVDIAKEIKRKVRERLSLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALE 172
Query: 232 ILPQSSVSMLY--ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKT 289
+ + + + ++ KK+ LG G+++ CS + + +F K
Sbjct: 173 FIARLPIESFWGVGPVTAKKMHVLGIHNGEQL---RACSQAMLMREFG----------KV 219
Query: 290 ASWLYYIARGIDHEPVNARLVSKSIGC 316
Y ARGID PV A V KS+GC
Sbjct: 220 GGVYYDFARGIDLRPVEAVRVRKSVGC 246
>gi|226290036|gb|EEH45520.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 803
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 122/289 (42%), Gaps = 68/289 (23%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR+I D DCFY V NP+L PLAV Q ++ NYEAR +G+ +
Sbjct: 19 SRVILHFDYDCFYASVFEAENPALKSLPLAVQQKQI-----VVTCNYEARRRGLRKLQLI 73
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNI-------VERASIDEA 115
EAK+ CP++ + VP D++K+R+A +E+ L F + VER DE
Sbjct: 74 KEAKRVCPDVVI--VPG----EDLTKFRDASKEIYLFLKGFVGVERGWGGRVERLGFDEV 127
Query: 116 YIDLTDVVHERMKSIGHIAASQLSNTFV--------VGFGPDNNDEDA----------RK 157
++D+T +V ++ + + + L ++F +GF D R
Sbjct: 128 FLDVTSLVDYNVELLNY---NDLGSSFFHLDKTDPTLGFAYDARTVSGPTYPRSQTLDRT 184
Query: 158 AGVMEWLGQVYSDTDTSL--------------------------MENTEDFQELAIAGVI 191
+G W DTD S +N +Q L + +
Sbjct: 185 SG--SWAASHRQDTDGSAPCATSYSTTAGAFPSKTNNTHISNNNAQNKILYQRLILGSHL 242
Query: 192 VEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
IR + + + GI+ +K+LAKL HKPQ Q ++LP SV+
Sbjct: 243 ASYIRHKLEQHKSYTATVGISTSKLLAKLAGNFHKPQNQTTLLPPYSVA 291
>gi|190150365|ref|YP_001968890.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|189915496|gb|ACE61748.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
Length = 372
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 171/413 (41%), Gaps = 97/413 (23%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHM 60
T R I IDMDCFY +E + NP+L GKP+AV + +G G++ NYEAR G+ M
Sbjct: 19 TQRKIIHIDMDCFYAAIEMRENPALIGKPVAVG--GSVEGRGVLTTCNYEARKFGLHSAM 76
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + L VP ++ Y+ ++ + +++IVE S+DEAY+D+T
Sbjct: 77 PTAQALKRCPNLIL--VP-----VNMPLYKAVSEQIHQIFRRYTDIVEPLSLDEAYLDVT 129
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D Q S G W+ Q
Sbjct: 130 D-------------CRQCS-------------------GSATWIAQ-------------- 143
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
EIR A+ ++ SAGIA K LAK+V +KP Q ++ +++
Sbjct: 144 -------------EIRDAIWNELHLTASAGIAPLKFLAKIVSDQNKPNGQFVISPENMTA 190
Query: 241 LYANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+L +KK+ + GK+ +E + L C + +K + + F ++ L+ +
Sbjct: 191 FIYDLPLKKIPGV-GKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQR----LWEFS 245
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTC-LATRQDVSHWIQELADEVCERLEDDLT---- 352
ID+ + A KS+ P LA + + + EL ++ RL+ +
Sbjct: 246 HAIDNRKIEANRPRKSLAVENTLPTDIWHLAEAEQI---VDELFKKLVFRLQRNWGERSL 302
Query: 353 --LNKRRAQLLTVSFTQET-DGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
K +L FTQ T + + SR + +E+ QV +TN
Sbjct: 303 QEFKKLAIKLKFGDFTQTTLERTTDGLSR---------ERFIELLQQVWQRTN 346
>gi|46578488|ref|YP_009296.1| DNA polymerase IV [Desulfovibrio vulgaris str. Hildenborough]
gi|387151972|ref|YP_005700908.1| DNA-directed DNA polymerase [Desulfovibrio vulgaris RCH1]
gi|46447899|gb|AAS94555.1| DNA polymerase IV [Desulfovibrio vulgaris str. Hildenborough]
gi|311232416|gb|ADP85270.1| DNA-directed DNA polymerase [Desulfovibrio vulgaris RCH1]
Length = 386
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 129/297 (43%), Gaps = 69/297 (23%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMD F+ VE +PSL G+P V+ + + G + A +YEAR GV M A++
Sbjct: 3 IDMDAFFASVEQLDDPSLRGRP--VIVGGSSERGVVSAASYEARRYGVRSAMPTVTARRL 60
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP V G+ +Y R V+AVL +FS +VE+AS+DEAY+D T + ER+
Sbjct: 61 CPHGVF-----VSGRR--HRYAEVSRMVMAVLHDFSPVVEQASVDEAYLDATGL--ERL- 110
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
FGP DE A++
Sbjct: 111 -----------------FGP--VDEMAQR------------------------------- 120
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
+ +R A T CS G+A K LAK+ ++KP ILP V+ A L +
Sbjct: 121 --LKGRVREATGGLT---CSVGLAPVKFLAKIASDVNKPDGVFILPPEDVAAFLATLPVG 175
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPV 305
++ +G ++ E ++ L T ++ + + + F K LY ARGID P+
Sbjct: 176 RIPGVGKRM-LESLDLLGVRTAGDVLRHPVSFWERRF-GKGGLVLYDRARGIDPRPL 230
>gi|47568207|ref|ZP_00238911.1| DNA-damage-inducible protein P [Bacillus cereus G9241]
gi|47555197|gb|EAL13544.1| DNA-damage-inducible protein P [Bacillus cereus G9241]
Length = 412
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|42739188|gb|AAS43115.1| DNA-damage-inducible protein P, putative [Bacillus cereus ATCC
10987]
Length = 409
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 6 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 65
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 66 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 118
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 119 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 150
>gi|165976465|ref|YP_001652058.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|307245951|ref|ZP_07528034.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307250291|ref|ZP_07532244.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|226738229|sp|B0BPX9.1|DPO4_ACTPJ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|165876566|gb|ABY69614.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|306853170|gb|EFM85392.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306857673|gb|EFM89776.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
Length = 356
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 171/413 (41%), Gaps = 97/413 (23%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHM 60
T R I IDMDCFY +E + NP+L GKP+AV + +G G++ NYEAR G+ M
Sbjct: 3 TQRKIIHIDMDCFYAAIEMRENPALIGKPVAV--GGSVEGRGVLTTCNYEARKFGLHSAM 60
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + L VP ++ Y+ ++ + +++IVE S+DEAY+D+T
Sbjct: 61 PTAQALKRCPNLIL--VP-----VNMPLYKAVSEQIHQIFRRYTDIVEPLSLDEAYLDVT 113
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D Q S G W+ Q
Sbjct: 114 D-------------CRQCS-------------------GSATWIAQ-------------- 127
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
EIR A+ ++ SAGIA K LAK+V +KP Q ++ +++
Sbjct: 128 -------------EIRDAIWNELHLTASAGIAPLKFLAKIVSDQNKPNGQFVISPENMTA 174
Query: 241 LYANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+L +KK+ + GK+ +E + L C + +K + + F ++ L+ +
Sbjct: 175 FIYDLPLKKIPGV-GKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQR----LWEFS 229
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTC-LATRQDVSHWIQELADEVCERLEDDLT---- 352
ID+ + A KS+ P LA + + + EL ++ RL+ +
Sbjct: 230 HAIDNRKIEANRPRKSLAVENTLPTDIWHLAEAEQI---VDELFKKLVFRLQRNWGERSL 286
Query: 353 --LNKRRAQLLTVSFTQET-DGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
K +L FTQ T + + SR + +E+ QV +TN
Sbjct: 287 QEFKKLAIKLKFGDFTQTTLERTTDGLSR---------ERFIELLQQVWQRTN 330
>gi|225682618|gb|EEH20902.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 720
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 122/289 (42%), Gaps = 68/289 (23%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR+I D DCFY V NP+L PLAV Q ++ NYEAR +G+ +
Sbjct: 19 SRVILHFDYDCFYASVFEAENPALKSLPLAVQQKQI-----VVTCNYEARRRGLRKLQLI 73
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNI-------VERASIDEA 115
EAK+ CP++ + VP D++K+R+A +E+ L F + VER DE
Sbjct: 74 KEAKRVCPDVVI--VPG----EDLTKFRDASKEIYLFLKGFVGVERGWGGRVERLGFDEV 127
Query: 116 YIDLTDVVHERMKSIGHIAASQLSNTFV--------VGFGPDNNDEDA----------RK 157
++D+T +V ++ + + + L ++F +GF D R
Sbjct: 128 FLDVTSLVDYNVELLNY---NDLGSSFFHLDKTDPTLGFAYDARTVSGPTYPRSQTLDRT 184
Query: 158 AGVMEWLGQVYSDTDTSL--------------------------MENTEDFQELAIAGVI 191
+G W DTD S +N +Q L + +
Sbjct: 185 SG--SWAASHRQDTDGSAPCATSYSTTAGAFPSKTNNTHISNNNAQNKILYQRLILGSHL 242
Query: 192 VEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVS 239
IR + + + GI+ +K+LAKL HKPQ Q ++LP SV+
Sbjct: 243 ASYIRHKLEQHKSYTATVGISTSKLLAKLAGNFHKPQNQTTLLPPYSVA 291
>gi|229163082|ref|ZP_04291038.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus R309803]
gi|228620488|gb|EEK77358.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus R309803]
Length = 412
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPKL-VVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|453089050|gb|EMF17090.1| DNA/RNA polymerase [Mycosphaerella populorum SO2202]
Length = 599
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 27/269 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I D D FY V NP+L P AV Q I+ VNY+ R +G+ +
Sbjct: 6 RVIIHFDYDAFYASVYEAKNPALKNVPFAVQQKQI-----IVTVNYKGRERGLHKLQLVK 60
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLTD 121
EA++ CPE+ + D+S +R+A E+ + FS + ER DE ++D+TD
Sbjct: 61 EARRVCPEV------VIELGEDLSIFRDASVELFRFIRSFSWSDRAERLGFDEVWLDVTD 114
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V + + + L ++F D A A + G Y + + + +
Sbjct: 115 MVEHNLDLLNR---NDLRHSFFQLSRDDPTRGFAYDATSVA--GHTYPEDYAAPADADDL 169
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILP------ 234
L I + IR + + + C+ G+A NK+L+KLV LHKP+ Q +I+P
Sbjct: 170 TLRLRIGSHLALHIRHGLENTQGYTCTVGVATNKLLSKLVGTLHKPKSQTTIMPPLITRD 229
Query: 235 --QSSVSMLYANLSIKKVRHLGGKLGDEV 261
S+V+ + I K+ +G K+ ++
Sbjct: 230 GRPSNVTTFLDSHDIGKIPGIGFKISQKL 258
>gi|307263709|ref|ZP_07545317.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|306870963|gb|EFN02699.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 372
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 171/413 (41%), Gaps = 97/413 (23%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHM 60
T R I IDMDCFY +E + NP+L GKP+AV + +G G++ NYEAR G+ M
Sbjct: 19 TQRKIIHIDMDCFYAAIEMRENPALIGKPVAVG--GSVEGRGVLTTCNYEARKFGLHSAM 76
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + L VP ++ Y+ ++ + +++IVE S+DEAY+D+T
Sbjct: 77 PTAQALKRCPNLIL--VP-----VNMPLYKAVSEQIHQIFRRYTDIVEPLSLDEAYLDVT 129
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D Q S G W+ Q
Sbjct: 130 D-------------CRQCS-------------------GSATWIAQ-------------- 143
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
EIR A+ ++ SAGIA K LAK+V +KP Q ++ +++
Sbjct: 144 -------------EIRDAIWNELHLTASAGIAPLKFLAKIVSDQNKPNGQFVISPENMTA 190
Query: 241 LYANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+L +KK+ + GK+ +E + L C + +K + + F ++ L+ +
Sbjct: 191 FIYDLPLKKIPGV-GKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQR----LWEFS 245
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTC-LATRQDVSHWIQELADEVCERLEDDLT---- 352
ID+ + A KS+ P LA + + + EL ++ RL+ +
Sbjct: 246 HAIDNRKIEANRPRKSLAVENTLPTDIWHLAEAEQI---VDELFKKLVFRLQRNWGERSL 302
Query: 353 --LNKRRAQLLTVSFTQET-DGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
K +L FTQ T + + SR + +E+ QV +TN
Sbjct: 303 QEFKKLAIKLKFGDFTQTTLERTTDGLSR---------ERFIELLQQVWQRTN 346
>gi|156838702|ref|XP_001643052.1| hypothetical protein Kpol_1069p17 [Vanderwaltozyma polyspora DSM
70294]
gi|156113641|gb|EDO15194.1| hypothetical protein Kpol_1069p17 [Vanderwaltozyma polyspora DSM
70294]
Length = 634
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 95/417 (22%), Positives = 168/417 (40%), Gaps = 98/417 (23%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTR---------- 58
ID++ F+ QVE P+ VQ+++ IIA++Y AR +TR
Sbjct: 29 IDLNAFFAQVEQVRCGYTKDDPVVCVQWSS-----IIAISYAARKHDITRMDSIKDALKK 83
Query: 59 ------------HMRGDE---------------AKQHCPEIELCRVPSVRGKADISKYRN 91
+ +G++ +KQ PE + K ++ YR
Sbjct: 84 SNNKLIPIHTAVYKKGEDFWQYHDGCGSWMQEASKQLSPE---------QYKVSLNPYRR 134
Query: 92 AGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM--------KSIGHIAASQLSNTFV 143
GR++ + +F ++VE AS+DE ++D++ + +++ K L F+
Sbjct: 135 EGRKIFKIFKDFCDLVEIASVDEGFLDISRLCLQQLLFEEDILEKCKEDSEGKSLQERFI 194
Query: 144 VGFGPDNNDEDARKAGV------MEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRA 197
G + D D+ V +++ G VY SL+++ +D A+ I ++IR
Sbjct: 195 AG----DYDLDSYLPPVPDTLKTLKFEGFVYDAEFGSLIDDWDDVI-FALGSQISQKIRN 249
Query: 198 AVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY--ANLSIKKVRHLGG 255
V + S GIA K + KL KP Q+I+ S++ + N+ + +GG
Sbjct: 250 HVRDTLGYTTSCGIARTKTVCKLGSNFKKPDAQTIIRNKSITKFFDNGNIELTNFWTMGG 309
Query: 256 KLGDEVVETLQCSTM-------------LELEKF---SLKQLQSHFE---------EKTA 290
KLG ++ L T +E+ K+ L +L + E E
Sbjct: 310 KLGQNLIHILNLPTQGSIKALRERWDDPVEINKYMNERLLELNGNGEDFEMDDDKKEAVT 369
Query: 291 SWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
L+ + RG PVN R + KS+ K G +C D W+ +E+ +R+
Sbjct: 370 QKLFDLVRGQHCLPVNPRPIIKSMMSNKNLRGNSC-KNIIDCMQWLDIFGNELADRV 425
>gi|298207148|ref|YP_003715327.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
gi|83849783|gb|EAP87651.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
Length = 368
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 145/345 (42%), Gaps = 72/345 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE NP L GKP+AV A +YEAR GV M G
Sbjct: 8 RKIIHVDMDAFYASVEQLDNPDLRGKPIAVGGGGKRGVVS--AASYEARVFGVRSAMSGA 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CPE+ K + ++Y+ ++ I E + + TD V
Sbjct: 66 QAQRLCPELIFV-------KTNFTRYKECSQQ----------------IREIFYEYTDKV 102
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ TE+ +
Sbjct: 103 E-----------------------PLSLDE--------------------AYLDVTENKK 119
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
A +I +EIR + +KT + SAGI+ NK +AK+ ++KP Q + V
Sbjct: 120 GNPSATLIAKEIREKIKAKTGLNASAGISINKFIAKVASDINKPNGQKTINPEEVIPFLE 179
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L I+K + GK+ E + T +L+ SL+ L+ HF K+ ++ Y+I RGI +
Sbjct: 180 TLDIRKFYGI-GKVTAEKMYLHGIFTGNDLKSKSLEYLEEHF-GKSGTYYYHIVRGIHNS 237
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
V KS+G + F + + + ++ +A+E+ RLE
Sbjct: 238 EVKPHRTRKSLGAERTFS--ENITSELFMMERLEHIAEEIERRLE 280
>gi|325578163|ref|ZP_08148298.1| DNA-directed DNA polymerase IV [Haemophilus parainfluenzae ATCC
33392]
gi|325159899|gb|EGC72028.1| DNA-directed DNA polymerase IV [Haemophilus parainfluenzae ATCC
33392]
Length = 344
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 128/305 (41%), Gaps = 69/305 (22%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCP 70
MDCFY VE + NP+L GKP+A V ++ + G + NYEAR G+ M +A + CP
Sbjct: 1 MDCFYASVEIRENPTLQGKPVA-VGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIKKCP 59
Query: 71 EIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 130
+ L V ++ Y+ ++ + +++I+E S+DEAY+D+TD
Sbjct: 60 NLILVPV-------NMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYLDVTD--------- 103
Query: 131 GHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGV 190
+Q S G W+ Q
Sbjct: 104 ----CTQCS-------------------GSATWIAQ------------------------ 116
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
EIR A+ + + SAG+A K LAK+ ++KP Q ++ V L +KK+
Sbjct: 117 ---EIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQPHEVEQFVKTLPLKKI 173
Query: 251 RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLV 310
+ GK+ E + + T +++K L + F K ++ + GID + A
Sbjct: 174 PGV-GKVTSERLLKMGLETCEDVQKLDQSILLNIF-GKMGKRIWDFSHGIDDREIQAYRE 231
Query: 311 SKSIG 315
KSIG
Sbjct: 232 RKSIG 236
>gi|29349817|ref|NP_813320.1| DNA damage-inducible protein [Bacteroides thetaiotaomicron
VPI-5482]
gi|29341728|gb|AAO79514.1| DNA damage-inducible protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 353
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 134/307 (43%), Gaps = 72/307 (23%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCP 70
MD FY VE + +P L GKPLAV + G + A +YEAR GV M +AK+ CP
Sbjct: 1 MDAFYASVEQRDHPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAMSSQKAKRLCP 58
Query: 71 EIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 130
++ V G+ D+ Y++ R+ I E + + TD++
Sbjct: 59 QLIF-----VSGRMDV--YKSVSRQ----------------IHEIFHEYTDIIE------ 89
Query: 131 GHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGV 190
P + DE + ++ TE+ + +++A
Sbjct: 90 -----------------PLSLDE--------------------AFLDVTENKKGISLAVD 112
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSMLYANLSIKK 249
I +EI+ + + SAG+++NK LAK+ KP +I P ++ + A L I+
Sbjct: 113 IAKEIKLRIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALDFI-AGLPIES 171
Query: 250 VRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARL 309
+ G + + + L L+L K SL+ L +HF K + Y +RGID PV A
Sbjct: 172 FWGV-GPVTAKKMHLLGIHNGLQLRKCSLEMLTAHF-GKVGALYYECSRGIDERPVEAVR 229
Query: 310 VSKSIGC 316
+ KSIGC
Sbjct: 230 IRKSIGC 236
>gi|86143650|ref|ZP_01062026.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
gi|85829693|gb|EAQ48155.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
Length = 367
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 151/353 (42%), Gaps = 84/353 (23%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG-----IIAVNYEARHKGV 56
+R I +DMD FY VE NP L GKP+AV GGG + A +YEAR GV
Sbjct: 6 VNRKIIHVDMDAFYASVEQLDNPELRGKPVAV-------GGGSERGVVSAASYEARKFGV 58
Query: 57 TRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAY 116
M G A++ CP++ K +YR A I E +
Sbjct: 59 RSAMAGALARKLCPDLIFV-------KTRFDRYREIS----------------AQIREVF 95
Query: 117 IDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLM 176
+ TD+V P + DE + +
Sbjct: 96 HEYTDLVE-----------------------PLSLDE--------------------AYL 112
Query: 177 ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQ 235
+ TE+ + A +I +EIRA + KT + SAGI+ NK +AK+ ++KP Q ++ P+
Sbjct: 113 DVTENKKGNPSATLIAKEIRAKIKEKTGLNASAGISINKFIAKVASDVNKPNGQKTVNPE 172
Query: 236 SSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY 295
+ L A L I+K + GK+ E + L T +L+ SL+ LQ F K+ + Y
Sbjct: 173 EVLPFLEA-LDIRKFYGV-GKVTAEKMYQLGIFTGNDLKSKSLEFLQEKF-GKSGNHYYN 229
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
+ RGI V + KS+G + F +++ + ++ +A+E+ RL+
Sbjct: 230 VVRGIHLSEVKPHRIRKSLGAERTFS--ENISSEIFMLERLENIAEEIERRLK 280
>gi|146303381|ref|YP_001190697.1| DNA polymerase IV [Metallosphaera sedula DSM 5348]
gi|189027671|sp|A4YEC1.1|DPO4_METS5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|145701631|gb|ABP94773.1| DNA-directed DNA polymerase [Metallosphaera sedula DSM 5348]
Length = 349
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 132/306 (43%), Gaps = 70/306 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYN--TWKGGGIIAVNYEARHKGVTRHMRG 62
I+ +D D F+ QVE LNPSL GKP+ V Y+ T G + NYEAR G+ M
Sbjct: 2 IVLFVDFDYFFAQVEEILNPSLKGKPVVVCVYSGRTKDSGAVATSNYEARKLGIKAGMPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+AK+ + +R + Y+ R V+ ++S + + +E ASIDEAY+D+T
Sbjct: 62 IKAKEIGKDAVFL---PMRKEV----YQQVSRRVMNIISGYGDKLEIASIDEAYLDIT-- 112
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
R+K D E ARK
Sbjct: 113 --RRVKDF------------------DEAKELARK------------------------- 127
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
++A VL K + + GI NKV+AK++ ++KP I+ V
Sbjct: 128 ------------LKAEVLEKERLRVTVGIGPNKVVAKIIADMNKPDGLGIIYPEEVKDFL 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
NL I KV + GK+ +E++ + + + ++ S +L + + A++L +A H
Sbjct: 176 YNLDISKVPGV-GKITEEILRKVGINRLGDVINKS-GELVNLVGKSKANYLLSLANNTYH 233
Query: 303 EPVNAR 308
+PV +R
Sbjct: 234 DPVESR 239
>gi|347530139|ref|YP_004836887.1| DNA polymerase IV [Sphingobium sp. SYK-6]
gi|345138821|dbj|BAK68430.1| DNA polymerase IV [Sphingobium sp. SYK-6]
Length = 366
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 168/419 (40%), Gaps = 85/419 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE + +PSL GKP+AV A +YEAR GV M G
Sbjct: 9 RKIIHVDMDAFYASVEQRDDPSLRGKPIAVGGGGPRGVVA--AASYEARVFGVRSAMPGG 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CPE+ R A YR AV + I ER TDV+
Sbjct: 67 QARRLCPELVFVR-------ARFDAYR-------AVSQQIRGIFER---------FTDVI 103
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ T++
Sbjct: 104 Q-----------------------PLSLDE--------------------AYLDVTQNKL 120
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+ A + +EIR + +T SAG++ NK++AKL +KP I+ A
Sbjct: 121 GIVSATYVAQEIRRLIREETGLTASAGVSCNKLIAKLASDQNKPDGLCIVKPEEAEAFMA 180
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+ + ++ H G + + TL + +L+ + L LQ HF K+A++ + ARGID
Sbjct: 181 AMPVGRI-HGIGPVTARRMATLGIHSGADLKAWPLPALQRHF-GKSATFYHDAARGIDDR 238
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELA--DEVCERLEDDLTLNKRRAQLL 361
PV R KSI F D+ Q LA +++ RL + + + +
Sbjct: 239 PVRDRETRKSISVEDTF--------ESDIGAEGQLLAELEKIAARLWTRVIAARALGRTV 290
Query: 362 TVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLS 420
T+ + D ++ + SR++ +D+ + ++ P + LL LGLS
Sbjct: 291 TLKI-KLGDFRILTRSRTLPAPPVNAEDLYAIGTDLLRAQLPLP----IGARLLGLGLS 344
>gi|403165587|ref|XP_003325573.2| hypothetical protein PGTG_07406 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165786|gb|EFP81154.2| hypothetical protein PGTG_07406 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 869
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 136/351 (38%), Gaps = 69/351 (19%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQY---NTWKGGG----IIAVNYEARHKGVTRHMR 61
+D DCF+ P L GKPLAV N+ K G I + +YEAR GV
Sbjct: 3 VDFDCFFISAGLIARPELKGKPLAVCHAKATNSAKPNGSTSEIASCSYEARAFGVRNGQT 62
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
AK+ CPEI+ D Y + + +L +++ ++ S+DE ID
Sbjct: 63 LGRAKELCPEIQTI-------AYDFKLYEDLSFKFYNILLSYADELQAVSVDECLID--- 112
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+S+ F+ +GPD ++ ++S ++
Sbjct: 113 ----------------VSSRFINQYGPDG-----------------FNSIESSALK---- 135
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+ EEIR V S TQ S GI++N +LAKL KP L +
Sbjct: 136 ---------LAEEIRTTVRSATQCEVSIGISYNVLLAKLATKKAKPCGAFFLDTGLAQAI 186
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
+LSI + G +E+ L + +L+ F L +L LY A G+D
Sbjct: 187 LKDLSIDDLPGFGWAQKNEIDNKLSVDNVGDLQTFPLSRLVEVLGPSRGKTLYQYAHGLD 246
Query: 302 HEPVNA-----RLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
+ + + VS I RF K DV ++++L EV RL
Sbjct: 247 DRTLKSSNHERKSVSAVINYGIRF-KKLDEGGNDDVRIFLRQLGQEVSRRL 296
>gi|251783287|ref|YP_002997592.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242391919|dbj|BAH82378.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 365
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 150/357 (42%), Gaps = 74/357 (20%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NP L GK + + + GG G+++ NYEAR G+
Sbjct: 10 TSRKIIHIDMDAFFAAVEERDNPVLKGKLVVIGKDPRETGGRGVVSTCNYEARKYGIHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR+ G+ E +I +R Y DL
Sbjct: 70 MSSKEAYERCPQ-------AIFISGNYEKYRSVGQ-------EIRHIFKR------YTDL 109
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE + ++ T
Sbjct: 110 VE--------------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSV 238
++ + A I + I+ + ++ CSAG+++NK LAKL KP + +LPQ ++
Sbjct: 124 DNKLGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDAL 183
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
S L A+L I+K H GK E + + T +L + L HF + LY AR
Sbjct: 184 SFL-ADLPIEKF-HGVGKKSVEKLHEMGIYTGQDLLEVPEMTLIDHF-GRFGFDLYRKAR 240
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
GI H PV + KSIG + + L D+ I + A V L+D L K
Sbjct: 241 GISHSPVKPNRIRKSIGSERTYA--KLLYQEADIKAEISKNARRVAALLQDHKKLGK 295
>gi|170748058|ref|YP_001754318.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM
2831]
gi|170654580|gb|ACB23635.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM
2831]
Length = 360
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 131/312 (41%), Gaps = 70/312 (22%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
IDMD FY VE + +PSL GKPLAV + + G + A +YEAR GV M A++
Sbjct: 13 IDMDAFYASVEQRDDPSLRGKPLAV--GGSRERGVVAAASYEARRFGVRSAMPSATARRL 70
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 128
CP++ K YR E+ AV + + ++E ++DEAY+D+T+
Sbjct: 71 CPDLLFV-------KPRFEVYRAISEEIRAVFARHTAVIEPVALDEAYLDVTE------N 117
Query: 129 SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIA 188
+G A+ ++ +A ++E G V S A
Sbjct: 118 LLGLPTATAVAKAI--------------RAEILERTGLVAS------------------A 145
Query: 189 GVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIK 248
GV ++NK LAK+ KP ++ + A L I
Sbjct: 146 GV---------------------SYNKFLAKVASDHRKPNALFVITPAMGPDFVAALPIG 184
Query: 249 KVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
+ H G + + ++ L T +L ++ ++L+ F A + + +ARGID PV A
Sbjct: 185 RF-HGVGPVTEAKMKRLGIETGADLRAWTPERLRETFGSAGA-YYHAVARGIDGRPVRAH 242
Query: 309 LVSKSIGCCKRF 320
V KSIG F
Sbjct: 243 RVRKSIGAETTF 254
>gi|228922896|ref|ZP_04086193.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|423582356|ref|ZP_17558467.1| DNA polymerase IV [Bacillus cereus VD014]
gi|423635027|ref|ZP_17610680.1| DNA polymerase IV [Bacillus cereus VD156]
gi|228836752|gb|EEM82096.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|401213235|gb|EJR19976.1| DNA polymerase IV [Bacillus cereus VD014]
gi|401279013|gb|EJR84943.1| DNA polymerase IV [Bacillus cereus VD156]
Length = 412
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ V+S F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVISRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|440635246|gb|ELR05165.1| hypothetical protein GMDG_07206 [Geomyces destructans 20631-21]
Length = 616
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 30/241 (12%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII D DCFY V NP+L PL V Q I+ NYEAR +G+ +
Sbjct: 16 GRIIIHFDYDCFYASVFEVENPALKSVPLGVQQKQI-----IVTCNYEARRRGLHKLQLV 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLT 120
EAK+ CP + + V G+ + ++R+A + + L F+ N VE+ DE ++D+T
Sbjct: 71 SEAKKKCPHMVI-----VLGE-QLDRFRDASKMLYKFLESFTWNNKVEKLGFDEVFLDVT 124
Query: 121 DVVHERMKSIGHIAASQLSNTFV--------VGFGPDNNDEDARKAGVMEWLGQVYSDTD 172
D+V + + LS+ F +GF D +R AG E+ G + +
Sbjct: 125 DIVAYNQSLLN---PNDLSHAFFNLSRDDPTIGFSFDA----SRTAG-HEYPGLSEASAE 176
Query: 173 TSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI 232
S ++ E +L I + + +R + + + GI+ +K+LAKL LHKP+ Q+
Sbjct: 177 IS-AKDQELLIQLRIGSHLAQHLRHRLEEDKGYTSTVGISTSKLLAKLAGNLHKPKAQTT 235
Query: 233 L 233
L
Sbjct: 236 L 236
>gi|229031792|ref|ZP_04187781.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus AH1271]
gi|228729538|gb|EEL80526.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus AH1271]
Length = 430
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G I+ +YEAR G+ M
Sbjct: 27 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIVTCSYEARDYGIRTTMPL 86
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 87 WEAKRLCPQLVVMR-------PNFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITD 138
>gi|410465504|ref|ZP_11318750.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio magneticus str. Maddingley MBC34]
gi|409981467|gb|EKO38032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio magneticus str. Maddingley MBC34]
Length = 394
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 108/425 (25%), Positives = 169/425 (39%), Gaps = 93/425 (21%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
+I +DMD F+ VE PSL GKP+ + ++ G + A +YEAR GV M E
Sbjct: 3 VILHLDMDAFFASVEQHDEPSLKGKPVIIGHHHR---GVVSAASYEARVYGVRSAMPVSE 59
Query: 65 AKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
AK+ CP +P R +Y R V+A L FS +VE ASIDEAY+D+T
Sbjct: 60 AKRRCPHGVF--LPGNR-----RRYSEVSRLVMATLGRFSPLVEPASIDEAYVDITGC-- 110
Query: 125 ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE 184
T FGP A KA + E
Sbjct: 111 ---------------QTL---FGPPETMARAMKAAIRE---------------------- 130
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-PQSSVSMLYA 243
T CS G+A K +AK+ KP +I+ P++++ L
Sbjct: 131 -----------------ATGLPCSVGVAPVKFIAKIASDYDKPDGLTIVTPETALDFL-G 172
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASW---LYYIARGI 300
L + K+ + GK +E + L + ++ + + L H W LY A
Sbjct: 173 PLPVSKIPGV-GKRAEETLARLGIRLVADIRRHEPEFLARH----CGKWGLDLYNKAHAR 227
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
V+ +KS+ F T A R ++ W+ + A ER+ +L R +
Sbjct: 228 GSAVVSTDREAKSVSAENTFEADT--ADRDILAAWLLKQA----ERVGRELRQEGLRGRT 281
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLS 420
+T+ T ++ SR++A + I E + ++N A P+ + PL +G+
Sbjct: 282 VTIKLKFNTFRQITR-SRTLAEPTASDSAIFETARALLN----AEPLPN---PLRLIGVG 333
Query: 421 ASKFS 425
S+F
Sbjct: 334 VSQFG 338
>gi|390953838|ref|YP_006417596.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
gi|390419824|gb|AFL80581.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
Length = 367
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 157/376 (41%), Gaps = 85/376 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE NP L GKPLAV + + G + A +YEAR GV M G
Sbjct: 8 RKIIHIDMDAFYASVEQLDNPELRGKPLAV--GGSGQRGVVAAASYEARKFGVRSAMSGA 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A++ CPE+ K + +Y+ ++ I + +++ TD+V
Sbjct: 66 MARKLCPELIFV-------KTNFDRYKEVSKQ----------------IRKIFLEYTDLV 102
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ TE+ +
Sbjct: 103 E-----------------------PLSLDE--------------------AYLDVTENKK 119
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
A +I EEIR + KT + SAGI+ NK +AK+ ++KP Q L V
Sbjct: 120 GNPSASMIAEEIRKKIKKKTGLNASAGISINKFVAKIASDINKPNGQKTLSPEEVVPFLE 179
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L +KK + GK+ E + L T +L+ SL+ L+ +F K+ ++ + + RGI +
Sbjct: 180 TLDVKKFYGV-GKVTKEKMYRLGIYTGKDLKGKSLEFLEENF-GKSGAFYHNVVRGIHNS 237
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSH--WIQELADEVCERLEDDLTLNKRRAQLL 361
V KS+ F +++S ++ E DE+ +E L +K + +
Sbjct: 238 KVKPSRTQKSLAAEHTF--------FENISSEIFMMERLDEIAAEVEKRLHKSKLAGKTV 289
Query: 362 TVS-----FTQETDGK 372
T+ FT +T K
Sbjct: 290 TLKIKYSDFTLQTRSK 305
>gi|317154691|ref|YP_004122739.1| DNA-directed DNA polymerase [Desulfovibrio aespoeensis Aspo-2]
gi|316944942|gb|ADU63993.1| DNA-directed DNA polymerase [Desulfovibrio aespoeensis Aspo-2]
Length = 392
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 111/432 (25%), Positives = 176/432 (40%), Gaps = 112/432 (25%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG------IIAVNYEARHKGVTRHMRG 62
IDMD F+ VE +P GKPLAV GG + A +YEAR GV M
Sbjct: 8 IDMDAFFASVEQLDHPEYRGKPLAV--------GGTSDRSVVSAASYEARKWGVRSAMSV 59
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+A++ CP++ L V G+ + +Y+ +V+A L EFS VE+AS+DEAY+D T +
Sbjct: 60 VKARKLCPDLLL-----VSGR--MGRYKEISNQVMAALHEFSPTVEQASVDEAYLDGTGL 112
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
ER+ FGP +
Sbjct: 113 --ERL------------------FGPIDQ------------------------------- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
+ +I+ V T CS G A + LAK+ ++KP IL V+
Sbjct: 122 --------VARQIKTRVREVTGLTCSVGAAPVRFLAKIASDVNKPDGMFILRPEDVAGFL 173
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASW---LYYIARG 299
L + ++ +G KL E + + T ++ L + +S++E++ + L+ A G
Sbjct: 174 RTLPVGRIPGVGAKLA-ETLRHMGARTCGDI----LGRPRSYWEQRVGKYGGALHDRAGG 228
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
ID V +KS F T R+ ++ W+ LA ER+ DL + + +
Sbjct: 229 IDPSTVTPTSEAKSCSAENTFHEDTT--DREVLNRWL--LAQS--ERVGSDLRGHGYKGR 282
Query: 360 LLTVS-----FTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
+T+ FTQ T SRS+ + I E + ++ + DL +
Sbjct: 283 TVTLKVKFADFTQITR------SRSLDARTDNTALICETARDLLGQL-------DLRRAV 329
Query: 415 LFLGLSASKFSP 426
+G+ S FSP
Sbjct: 330 RLIGVGVSNFSP 341
>gi|407691820|ref|YP_006816609.1| DNA polymerase IV [Actinobacillus suis H91-0380]
gi|407387877|gb|AFU18370.1| DNA polymerase IV [Actinobacillus suis H91-0380]
Length = 351
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 96/406 (23%), Positives = 170/406 (41%), Gaps = 87/406 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHMRG 62
R I IDMDCFY +E + NP+L GKP+AV + +G G++ NYEAR G+ M
Sbjct: 5 RKIIHIDMDCFYAAIEMRENPALIGKPVAV--GGSIEGRGVLTTCNYEARKFGLHSAMPT 62
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+A + CP + L VP ++ Y+ ++ + ++NI+E S+DEAY+D+TD
Sbjct: 63 AQALKRCPNLIL--VP-----VNMPLYKAVSEQIHQIFRRYTNIIEPLSLDEAYLDVTD- 114
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
Q S G W+ Q
Sbjct: 115 ------------CQQCS-------------------GSATWIAQ---------------- 127
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
EIR A+ ++ + SAGIA K LAK+ +KP Q ++ +++
Sbjct: 128 -----------EIREAIWNELRLTASAGIAPLKFLAKIASDQNKPNGQFVISPENMTAFI 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+L +KK+ + GK+ +E + L C + +K + + F ++ L+ +
Sbjct: 177 YDLPLKKIPGV-GKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQR----LWDFSHA 231
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDL---TLNKR 356
ID+ + KS+ P T + + + EL ++ RL+ + +L +
Sbjct: 232 IDNRKIEVNRPRKSLAVENTLP--TDIWHLSEAEQIVDELFKKLVFRLQRNWGERSLQEF 289
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
+ + + F T + + ++L + +E+ QV +TN
Sbjct: 290 KKLAIKLKFGDFTQTTLERTTDGLSLERF-----IELLQQVWQRTN 330
>gi|423470365|ref|ZP_17447109.1| DNA polymerase IV [Bacillus cereus BAG6O-2]
gi|402436494|gb|EJV68524.1| DNA polymerase IV [Bacillus cereus BAG6O-2]
Length = 412
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEARENGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPPEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|303251027|ref|ZP_07337213.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|302650037|gb|EFL80207.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 351
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 153/353 (43%), Gaps = 89/353 (25%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHM 60
T R I IDMDCFY +E + NP+L GKP+AV + +G G++ NYEAR G+ M
Sbjct: 3 TQRKIIHIDMDCFYAAIEMRENPALIGKPVAV--GGSVEGRGVLTTCNYEARKFGLHSAM 60
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + L VP ++ Y+ ++ + +++IVE S+DEAY+D+T
Sbjct: 61 PTAQALKRCPNLIL--VP-----VNMPLYKAVSEQIHQIFRRYTDIVELLSLDEAYLDVT 113
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D Q S G W+ Q
Sbjct: 114 D-------------CRQCS-------------------GSATWIAQ-------------- 127
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-PQSSVS 239
EIR A+ ++ SAGIA K LAK+ +KP Q ++ P++ ++
Sbjct: 128 -------------EIRDAIWNELHLTASAGIAPLKFLAKIASDQNKPNGQFVISPENMIA 174
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
+Y +L +KK+ + GK+ +E + L C + +K + + F ++ L+
Sbjct: 175 FIY-DLPLKKIPGV-GKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQR----LWDF 228
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW--IQELADEVCERL 347
+ ID+ + A KS+ P D+ H +++ DE+ ++L
Sbjct: 229 SHAIDNRKIEANRPRKSLAVENTLP--------TDIWHLAEAEQIVDELFKKL 273
>gi|423331198|ref|ZP_17308982.1| DNA polymerase IV [Parabacteroides distasonis CL03T12C09]
gi|409230494|gb|EKN23356.1| DNA polymerase IV [Parabacteroides distasonis CL03T12C09]
Length = 353
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 129/307 (42%), Gaps = 72/307 (23%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCP 70
MD FY VE + +P L GKPLAV + G + A +YEAR GV M +AK+ CP
Sbjct: 1 MDAFYASVEQRDHPELRGKPLAVGHAE--QRGVVAAASYEARKYGVRSAMASQKAKRLCP 58
Query: 71 EIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 130
++ V G+ D+ Y++ R+ I E + D TD++
Sbjct: 59 DLIF-----VHGRMDV--YKSVSRQ----------------IHEIFHDYTDIIE------ 89
Query: 131 GHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGV 190
P + DE + ++ T++ Q +++A
Sbjct: 90 -----------------PLSLDE--------------------AFLDVTDNKQGISLAVD 112
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I +EI+ + SAG+++NK LAK+ KP + S A L I+
Sbjct: 113 IAKEIKKRIWENLNLIASAGVSYNKFLAKIASDYRKPNGLCTIHPSQALDFIARLPIESF 172
Query: 251 RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IARGIDHEPVNARL 309
+ G + + TL L+L + S + L F + A LYY ARGID+ PV A
Sbjct: 173 WGV-GPVTARKMHTLGIHNGLQLRECSGEMLTRQFGK--AGILYYEFARGIDNRPVEAVR 229
Query: 310 VSKSIGC 316
+ KS+GC
Sbjct: 230 IRKSVGC 236
>gi|345304664|ref|XP_003428244.1| PREDICTED: DNA polymerase kappa isoform 2 [Ornithorhynchus
anatinus]
Length = 882
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 135/302 (44%), Gaps = 50/302 (16%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
I IDMD FY VE + NP L KP+AV + + NY AR GV M G A
Sbjct: 103 IVHIDMDAFYAAVEMRDNPELRDKPIAVGSMSM-----LSTSNYHARRFGVRAAMPGFIA 157
Query: 66 KQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 125
K+ CP + + VP+ + KYR +EV +L+E+ S+DEAY+++T + E
Sbjct: 158 KRLCPHLTI--VPT-----NFDKYREVSKEVREILTEYDPNFMAMSLDEAYLNITKHLEE 210
Query: 126 RMK----------SIGHIA--ASQLSNTFV--------------VGFGPDNNDEDARKAG 159
R G+ A QL + F + F P ++
Sbjct: 211 RQNWPEDKRRYFFKAGNTAENGKQLLDLFSKTNKIKQPELCEDELSFSPVLFEDS---PP 267
Query: 160 VMEWLGQ--VYSDTDTSLMENTEDFQELAIAGV----IVEEIRAAVLSKTQFHCSAGIAH 213
+++ GQ ++ E+ + Q I G +V EIR + KT SAGIA
Sbjct: 268 LLQQQGQPTIHFQEVGEEQESPQVAQNSIIFGTSAEDVVREIRFRIEQKTTLTASAGIAP 327
Query: 214 NKVLAKLVCGLHKPQKQ-SILPQSSVSM-LYANLSIKKVRHLGGKLGDEVVETLQCSTML 271
N +LAK+ +KP Q ILP M +L I+KV + GK+ +++++ L +T
Sbjct: 328 NMMLAKVCSDKNKPNGQYRILPTRQAVMDFIKDLPIRKVSGI-GKVTEKMLKALGITTCT 386
Query: 272 EL 273
+L
Sbjct: 387 DL 388
>gi|408371276|ref|ZP_11169044.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
gi|407743237|gb|EKF54816.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
Length = 367
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 133/322 (41%), Gaps = 80/322 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG----GII-AVNYEARHKGVTR 58
R I +DMD FY VE P L GK LAV GG G++ A +Y+AR GV
Sbjct: 8 RKIIHVDMDAFYASVEQLDFPELRGKALAV-------GGNEVRGVVSAASYQARAFGVRS 60
Query: 59 HMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYID 118
M G AK+ CPE L VP +YR ++ A+ +++
Sbjct: 61 AMSGVLAKRLCPE--LIFVPP-----RFDRYREISMKIRAI----------------FLE 97
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
TD+V P + DE + ++
Sbjct: 98 YTDLVE-----------------------PLSLDE--------------------AYLDV 114
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
TE+ + A +I +IR + +T CSAGI+ NK +AK+ +KP Q + V
Sbjct: 115 TENKKGNPSATLIASQIRERIFQQTGLRCSAGISINKFVAKIASDYNKPNGQKTVEPDEV 174
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
L I+K + GK+ + + L T L+L+K ++ L HF K+ S Y + R
Sbjct: 175 IPFLEALDIRKFYGV-GKVTAQKMYQLGIFTGLDLKKKPIEFLNEHF-GKSGSLYYNVVR 232
Query: 299 GIDHEPVNARLVSKSIGCCKRF 320
GI + PV V KS+G + F
Sbjct: 233 GIHNSPVKPDRVPKSVGAERTF 254
>gi|319651459|ref|ZP_08005587.1| DNA polymerase IV [Bacillus sp. 2_A_57_CT2]
gi|317396774|gb|EFV77484.1| DNA polymerase IV [Bacillus sp. 2_A_57_CT2]
Length = 438
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE +P+L GKPLA+ + G I+ +YEAR GV M
Sbjct: 17 GRVILHVDMNSFYASVEMAYDPTLKGKPLAIAGNPEERRGIIVTCSYEARSFGVKTTMPL 76
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + K + +YR A + +L E+S +VE SIDE Y+D+TD
Sbjct: 77 WEAKKLCPQLIIM-------KPNFERYRAASMGMFDILHEYSTLVEPVSIDEGYVDITD 128
>gi|167763232|ref|ZP_02435359.1| hypothetical protein BACSTE_01604 [Bacteroides stercoris ATCC
43183]
gi|167698526|gb|EDS15105.1| ImpB/MucB/SamB family protein [Bacteroides stercoris ATCC 43183]
Length = 365
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 133/327 (40%), Gaps = 92/327 (28%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD FY VE + NP L GKP+AV + G + A +YEAR GV M
Sbjct: 1 MTERKIIHIDMDAFYASVEQRDNPELRGKPVAVGHAE--ERGVVAAASYEARRFGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP+ L +P G+ D+ Y++ R+ I E + + T
Sbjct: 59 SSQKAKRLCPQ--LIFIP---GRMDV--YKSVSRQ----------------IHEIFHEYT 95
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
DV+ P + DE + ++ TE
Sbjct: 96 DVIE-----------------------PISLDE--------------------AFLDVTE 112
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKL---------VCGLHKPQKQS 231
+ + +A I EI+ V + SAG+++NK LAK+ +C +H Q
Sbjct: 113 NKPGILLAVDIAREIKRKVRERLSLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALD 172
Query: 232 ILPQSSVSMLY--ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKT 289
+ + + ++ +K+ LG G ++ CS + L +F K
Sbjct: 173 FIAHLPIESFWGVGPVTARKMHVLGIHTGGQL---RACSQAMLLREFG----------KV 219
Query: 290 ASWLYYIARGIDHEPVNARLVSKSIGC 316
+ Y ARGID PV A + KS+GC
Sbjct: 220 GNIYYDFARGIDLRPVEAVRIRKSVGC 246
>gi|229019358|ref|ZP_04176182.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus AH1273]
gi|229025604|ref|ZP_04182011.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus AH1272]
gi|423417942|ref|ZP_17395031.1| DNA polymerase IV [Bacillus cereus BAG3X2-1]
gi|228735698|gb|EEL86286.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus AH1272]
gi|228741926|gb|EEL92102.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus AH1273]
gi|401107113|gb|EJQ15070.1| DNA polymerase IV [Bacillus cereus BAG3X2-1]
Length = 412
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITD 120
>gi|357060135|ref|ZP_09120909.1| DNA polymerase IV [Alloprevotella rava F0323]
gi|355377025|gb|EHG24265.1| DNA polymerase IV [Alloprevotella rava F0323]
Length = 371
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 112/427 (26%), Positives = 169/427 (39%), Gaps = 96/427 (22%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
T R I +DMDCF+ VE + NP L GKP+AV N + + +YEAR GV
Sbjct: 3 TERKIIHVDMDCFFAAVEQRDNPELRGKPVAV--GNDEERSVVTTASYEARKFGVHSAQS 60
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
AK+ CP L VP KYR R+ I E + D TD
Sbjct: 61 VQVAKRLCPS--LIIVP-----CHFEKYRAVNRQ----------------ISEIFHDYTD 97
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
V + D + ++ TE+
Sbjct: 98 QVE-------------------------------------------FLSVDEAFLDVTEN 114
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+ + +A I EI+ + + Q SAG+++ K+LAK+ KP +
Sbjct: 115 KKGVELAVDIAREIKNRIQEELQLTASAGVSYCKLLAKIASDYRKPDGLCTIHPDKALRF 174
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
A+L + K+ +G K E + + T +L ++SL L F K Y ARGID
Sbjct: 175 IAHLPVTKLWGVGPKTA-ERLHQMGIYTGEQLREYSLHSLTQAF-GKMGQVFYNFARGID 232
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD------LTLNK 355
PV +KS+GC F L T+ V + + ++ ER++ LTL
Sbjct: 233 ERPVVTTREAKSVGCEHTFEKD--LQTQAPVIVELYHVTLKLVERIKKHKFEGRTLTLKV 290
Query: 356 RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLL 415
+ A FTQ T S ++ L + K I+ ++ Q++ KT+++ PI
Sbjct: 291 KYA-----DFTQIT----RSLTQQELLRTKK--QILPLAKQLLAKTDTSRPIR------- 332
Query: 416 FLGLSAS 422
LGLS S
Sbjct: 333 LLGLSVS 339
>gi|326480922|gb|EGE04932.1| impB/mucB/samB family protein [Trichophyton equinum CBS 127.97]
Length = 588
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 94/377 (24%), Positives = 156/377 (41%), Gaps = 60/377 (15%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
ID DCFY V NP+L PLAV Q ++ NYEAR +G+ + +AK+
Sbjct: 30 IDYDCFYASVFEAENPALKNVPLAVQQKQI-----VVTCNYEARRRGLRKLQLIKDAKRI 84
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSE--FSNIVERASIDEAYIDLTDVVHER 126
CPE+ + V G+ D++K+R+ + + + L + + ER DE ++D+T ++
Sbjct: 85 CPEVVI-----VLGE-DLTKFRDVSKGLYSFLKSLIWGDQAERLGFDEVFLDVTAMIEYN 138
Query: 127 MKSIGHIAASQL----SNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED- 181
++ + + + F VGF D + G Y D L E
Sbjct: 139 LQWLAPGVRNSFFLLDKDDFTVGFEYDPT----------VYCGPTYPPLDDKLQSWCESS 188
Query: 182 ----FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL---- 233
Q L +A + IR + K + + GI+ +K+L+KL +HKP+ Q+ L
Sbjct: 189 PSDLGQRLILASHLANYIRKQLEEKHGYTSTVGISTSKLLSKLAGNVHKPRNQTTLIPPF 248
Query: 234 ------PQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTM-----------LELEKF 276
+ ++ + I KV +G K+ + S + L L+K
Sbjct: 249 LDDADQSDNYITQFMDDHEIGKVPGIGFKIASRRAQRAWGSFVTKVFRSKDYNPLMLDKI 308
Query: 277 SLKQLQSHFEEKTASWLYYIARGIDH-EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHW 335
L + + S ++ + G+DH E AR+V I F L T V
Sbjct: 309 LLG---GGWPKDIGSKIWELINGVDHSEVAAARMVPTQISIEDSF---RQLDTLDAVKKE 362
Query: 336 IQELADEVCERLEDDLT 352
+ LA + R+ DLT
Sbjct: 363 MLPLASSLIRRMHTDLT 379
>gi|423558287|ref|ZP_17534589.1| DNA polymerase IV [Bacillus cereus MC67]
gi|401191555|gb|EJQ98577.1| DNA polymerase IV [Bacillus cereus MC67]
Length = 412
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPPEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|347535095|ref|YP_004842520.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
gi|345528253|emb|CCB68283.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
Length = 361
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 155/375 (41%), Gaps = 83/375 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG----GII-AVNYEARHKGVTR 58
R I IDMD FY VE P L GKP+AV GG G++ A +YEAR GV
Sbjct: 8 RKIIHIDMDAFYASVEQLDQPELRGKPIAV-------GGNEIRGVVSAASYEARKFGVRS 60
Query: 59 HMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYID 118
+ G AK++CP++ K +Y +++ ++ E++++VE S+DEAY+D
Sbjct: 61 ALSGVLAKKYCPDLIFV-------KPRFDRYTEISKKIRSIFYEYTDLVEPLSLDEAYLD 113
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
+T + M S IAA F+
Sbjct: 114 VTQ-NKKNMSSATMIAAEIRQKIFI----------------------------------- 137
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
EL + +A +S +F +NK P Q + + V
Sbjct: 138 -----ELGLTA-------SAGISINKFVAKIASDYNK-----------PNGQKTVAPNEV 174
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
+ L IKK + GK+ E + L T L+L+ SL L+ HF K+ ++ Y++ R
Sbjct: 175 LLFLEQLPIKKFYGV-GKVTTEKMYQLGIFTGLDLKSKSLDFLEKHF-GKSGTFYYHVVR 232
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
G+ + V A ++KS+ F L + + + ++A+E+ RL+ K
Sbjct: 233 GVHNGEVKANRIAKSVAAEHTFD--INLTSEIFMLEKLSKIANELERRLQKHQKAGKTVT 290
Query: 359 QLLTVS-FTQETDGK 372
+ S FTQ+T K
Sbjct: 291 LKIKYSDFTQQTRSK 305
>gi|423452548|ref|ZP_17429401.1| DNA polymerase IV [Bacillus cereus BAG5X1-1]
gi|401140186|gb|EJQ47743.1| DNA polymerase IV [Bacillus cereus BAG5X1-1]
Length = 412
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITD 120
>gi|398976935|ref|ZP_10686745.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM25]
gi|398138818|gb|EJM27832.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM25]
Length = 353
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 20/130 (15%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I +D DCFY +E + +PSL GKPLAV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHVDCDCFYAAIEMRDDPSLAGKPLAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + YR A +E+ + S++++++E S+DE
Sbjct: 54 GVRSAMSSGHALKLCPDLTIV-------KPRMDAYREASKEIHTIFSDYTDLIEPLSLDE 106
Query: 115 AYIDLTDVVH 124
AY+D++D H
Sbjct: 107 AYLDVSDSAH 116
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I ++IR V ++ SAG+A NK LAK+ KP ++ V + L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEEFVSGLPVSKL 183
Query: 251 RHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVN 306
+G D++ + C + + +K +L + F E+ L+ +ARGID V+
Sbjct: 184 HGVGKVTADKLSKLGISDCLQLRDWDKLALVREFGSFGER----LWSLARGIDERLVH 237
>gi|335996993|ref|ZP_08562910.1| DNA polymerase IV [Lactobacillus ruminis SPM0211]
gi|335352063|gb|EGM53554.1| DNA polymerase IV [Lactobacillus ruminis SPM0211]
Length = 366
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 155/395 (39%), Gaps = 81/395 (20%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIA-VNYEARHKGVTRHM 60
+R I +DMDCFY +E + N L GKP+ + + GG G+++ NY AR GV M
Sbjct: 2 ARKIIHVDMDCFYASIEVRDNQKLAGKPVVIARDPRHSGGKGVVSTANYVARSFGVHSAM 61
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+EA CP+ VP D KYR +E+
Sbjct: 62 NANEALNLCPDAVF--VPP-----DFKKYRRVSKEI-----------------------H 91
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
++ HE I IA D + ++ TE
Sbjct: 92 EIFHEYTDKIEPIA------------------------------------FDEAYLDVTE 115
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
L A +I I+ + KT CS GI++NK LAKL KP +++ +
Sbjct: 116 CKLGLKSATIIAHRIQQEIFEKTGLTCSTGISYNKFLAKLASDYAKPVGMTLVREDEALD 175
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS-HFEEKTASWLYYIARG 299
L I+K R +G K V++ + + + L +L H+ K + Y RG
Sbjct: 176 FLLPLKIEKFRGVGRK---TVIKMHELGVYNGYDLYGLSELDLIHYFGKMGHFFYEQVRG 232
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
ID V + KS G + F L + +++ ++ A ++L DDLT ++ +
Sbjct: 233 IDDREVEWQRERKSFGVERTF--NMPLVSNEEIDEQLKWTA----QKLADDLTRAQKHGK 286
Query: 360 LLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVS 394
L V + + + + ++ + LA Y D ++
Sbjct: 287 TLVV---KVRNSEFETKTKRLTLADYFQNDATTIA 318
>gi|302419135|ref|XP_003007398.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261353049|gb|EEY15477.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 609
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 35/260 (13%)
Query: 10 DMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHC 69
D DCFY V NP+L PL V Q + + NY AR +GV + MR A++ C
Sbjct: 63 DYDCFYASVLESQNPALKSLPLGVKQKSI-----LATCNYVARARGVRKLMRISAARKIC 117
Query: 70 PEIELCRVPSVRGKADISKYRNAGREVIAVLS--EFSNIVERASIDEAYIDLTDVVHERM 127
P++ + V G+ D++ +R+ + + A L +S VER +DE ++D+TD+++ M
Sbjct: 118 PDLVV-----VEGE-DLTPFRDVSKSLYAFLRGHSWSGKVERLGLDEVFMDVTDMINYNM 171
Query: 128 KSIGHIAASQLSNTFVV--------GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ + L+++F GF D R GV G+ +EN
Sbjct: 172 SCLNKLT---LADSFFCLSKTDPEKGFPCDLTKMAGRVHGVPPPAGE-------QQLEN- 220
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI---LPQS 236
+ + L + + +R + K F + G+A NK+L+KLV KP+ Q+ L
Sbjct: 221 QAYVRLLLGSHLAWYLRTNIEEKYGFTSACGVATNKLLSKLVGSKKKPRNQTTLLALENG 280
Query: 237 SVSMLYANLSIKKVRHLGGK 256
S + +I+K+ +GGK
Sbjct: 281 SAVDFMDSYTIRKIPGIGGK 300
>gi|403162637|ref|XP_003322823.2| hypothetical protein PGTG_04360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173018|gb|EFP78404.2| hypothetical protein PGTG_04360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 366
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 18/238 (7%)
Query: 82 GKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNT 141
K + YR +++ + SE +E+ASIDEA++D SI ++S++S
Sbjct: 44 AKVSLDPYRRESVKILKIFSEICPTIEKASIDEAFLDF---------SIPD-SSSEISLD 93
Query: 142 FVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 201
+ P + ED ++ V D D+ NT L I ++ R V
Sbjct: 94 DPLPNPPPLDLEDLLRSSQS---NLVPLDADSDYPTNTCTDIALLIGTELMARCRQQVFD 150
Query: 202 KTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEV 261
+ + CSAGIA NK+LAKL KP Q++L +V + K+R LGGKLG V
Sbjct: 151 RLGYTCSAGIATNKMLAKLCSAYKKPNAQTVLRAGAVRDFLRPFELSKLRFLGGKLGQSV 210
Query: 262 VETL--QCSTMLELE---KFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSI 314
E + C + +L K L QLQ+ E+T W++ ++ V + + KS+
Sbjct: 211 SELVDSTCDKLCQLSKVWKVPLSQLQASLGEQTGMWVWESVHDVNRSEVETKTLVKSM 268
>gi|423340147|ref|ZP_17317886.1| DNA polymerase IV [Parabacteroides distasonis CL09T03C24]
gi|409227582|gb|EKN20478.1| DNA polymerase IV [Parabacteroides distasonis CL09T03C24]
Length = 353
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 128/307 (41%), Gaps = 72/307 (23%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCP 70
MD FY VE + NP L GKPLAV + G + A +YEAR GV M +AK+ CP
Sbjct: 1 MDAFYASVEQRDNPELRGKPLAVGHAE--QRGVVAAASYEARKYGVRSAMASQKAKRLCP 58
Query: 71 EIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 130
+ V G+ D+ Y++ R+ I E + D TD++
Sbjct: 59 NLIF-----VHGRMDV--YKSVSRQ----------------IHEIFHDYTDIIE------ 89
Query: 131 GHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGV 190
P + DE + ++ T++ + +++A
Sbjct: 90 -----------------PLSLDE--------------------AFLDVTDNKRGISLAVD 112
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I +EI+ + SAG+++NK LAK+ KP + S A L I+
Sbjct: 113 IAKEIKKRIWDNLNLITSAGVSYNKFLAKIASDYRKPNGLCTIHPSQALDFIARLPIESF 172
Query: 251 RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-IARGIDHEPVNARL 309
+ G + + TL L+L + S + L F + A LYY ARGID+ PV A
Sbjct: 173 WGV-GPVTARKMHTLGIHNGLQLRECSGEMLTRQFGK--AGILYYEFARGIDNRPVEAVR 229
Query: 310 VSKSIGC 316
+ KS+GC
Sbjct: 230 IRKSVGC 236
>gi|255021890|ref|ZP_05293900.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
gi|254968714|gb|EET26266.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
Length = 390
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 141/354 (39%), Gaps = 83/354 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
+ R I +DMD F+ VE + P L G P+ V GG G++A +YEAR
Sbjct: 26 LAIRKIIHVDMDAFFAAVEQRDRPELRGLPVIV-------GGDPNVRGVVATCSYEARRF 78
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
G+ M A+ CP+ VR + D YR R+V+ +I
Sbjct: 79 GIRSAMSAARARSLCPQAIF-----VRPRMD--AYREVSRQVM-------------TILR 118
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
+Y L + P + DE +L + TD +
Sbjct: 119 SYTALVE--------------------------PLSLDE--------AFLDVTAATTDGT 144
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
L I EI + +T SAG+++NK+LAKL KP ++P
Sbjct: 145 LAVE------------IAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIP 192
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
A L + K+ H G + + + T+L+L SL+ L +HF K+ W Y
Sbjct: 193 PERGLAFLAPLPVGKL-HGVGPATVKKLSAMGVETVLDLRNLSLEFLVTHF-GKSGGWFY 250
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
+AR ID PV KS+G + F LA R + +QE+A +V RL+
Sbjct: 251 DVARAIDERPVQPSRQRKSVGTERTFSKN--LADRSVMLTTLQEMAAQVAARLQ 302
>gi|423522009|ref|ZP_17498482.1| DNA polymerase IV [Bacillus cereus HuA4-10]
gi|401176671|gb|EJQ83866.1| DNA polymerase IV [Bacillus cereus HuA4-10]
Length = 412
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEISHDPSLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPFSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALVTELQLPCSIGIAPN 153
>gi|307252679|ref|ZP_07534571.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306859855|gb|EFM91876.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 356
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/414 (25%), Positives = 174/414 (42%), Gaps = 99/414 (23%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHM 60
T R I IDMDCFY +E + NP+L GKP+AV + +G G++ NYEAR G+ M
Sbjct: 3 TQRKIIHIDMDCFYAAIEMRENPALIGKPVAV--GGSVEGRGVLTTCNYEARKFGLHSAM 60
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + L VP ++ Y+ ++ + +++IVE S+DEAY+D+T
Sbjct: 61 PTAQALKRCPNLIL--VP-----VNMPLYKAVSEQIHQIFRRYTDIVELLSLDEAYLDVT 113
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D Q S G W+ Q
Sbjct: 114 D-------------CRQCS-------------------GSATWIAQ-------------- 127
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-PQSSVS 239
EIR A+ ++ SAGIA K LAK+ +KP Q ++ P++ ++
Sbjct: 128 -------------EIRDAIWNELHLTASAGIAPLKFLAKIASDQNKPNGQFVISPENMIA 174
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
+Y +L +KK+ + GK+ +E + L C + +K + + F ++ L+
Sbjct: 175 FIY-DLPLKKIPGV-GKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQR----LWDF 228
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTC-LATRQDVSHWIQELADEVCERLEDDLT--- 352
+ ID+ + A KS+ P LA + + + EL ++ RL+ +
Sbjct: 229 SHAIDNRKIEANRPRKSLAVENTLPTDIWHLAEAEQI---VDELFKKLVFRLQRNWGERS 285
Query: 353 ---LNKRRAQLLTVSFTQET-DGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
K +L FTQ T + + SR + +E+ QV +TN
Sbjct: 286 LQEFKKLAIKLKFGDFTQTTLERTTDGLSR---------ERFIELLQQVWQRTN 330
>gi|126208514|ref|YP_001053739.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|226738228|sp|A3N148.1|DPO4_ACTP2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|126097306|gb|ABN74134.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
Length = 356
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 103/413 (24%), Positives = 170/413 (41%), Gaps = 97/413 (23%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHM 60
T R I IDMDCFY +E + NP+L GKP+AV + +G G++ NYEAR G+ M
Sbjct: 3 TQRKIIHIDMDCFYAAIEMRENPALIGKPVAV--GGSVEGRGVLTTCNYEARKFGLHSAM 60
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + L VP ++ Y+ ++ + +++IVE S+DEAY+D+T
Sbjct: 61 PTAQALKRCPNLIL--VP-----VNMPLYKAVSEQIHQIFRRYTDIVELLSLDEAYLDVT 113
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D Q S G W+ Q
Sbjct: 114 D-------------CRQCS-------------------GSATWIAQ-------------- 127
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
EIR A+ ++ SAGIA K LAK+ +KP Q ++ +++
Sbjct: 128 -------------EIRDAIWNELHLTASAGIAPLKFLAKIASDQNKPNGQFVISPENMTA 174
Query: 241 LYANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+L +KK+ + GK+ +E + L C + +K + + F ++ L+ +
Sbjct: 175 FIYDLPLKKIPRV-GKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQR----LWEFS 229
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTC-LATRQDVSHWIQELADEVCERLEDDLT---- 352
ID+ + A KS+ P LA + + + EL ++ RL+ +
Sbjct: 230 HAIDNRKIEANRPRKSLAVENTLPTDIWHLAEAEQI---VDELFKKLVFRLQRNWGERSL 286
Query: 353 --LNKRRAQLLTVSFTQET-DGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
K +L FTQ T + + SR + +E+ QV +TN
Sbjct: 287 QEFKKLAIKLKFGDFTQTTLERTTDGLSR---------ERFIELLQQVWQRTN 330
>gi|121707923|ref|XP_001271977.1| DNA polymerase iota, putative [Aspergillus clavatus NRRL 1]
gi|119400125|gb|EAW10551.1| DNA polymerase iota, putative [Aspergillus clavatus NRRL 1]
Length = 591
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 128/281 (45%), Gaps = 38/281 (13%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII D DCFY V P L PLAV Q ++ NYEAR +G+ +
Sbjct: 9 GRIIIHFDYDCFYASVFEAEQPVLKSLPLAVQQKQI-----VVTCNYEARRRGLRKLQLI 63
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEF--SNIVERASIDEAYIDLT 120
EAKQ CPE+ + V G+ D++++RNA +E+ L F VE+ DE + D++
Sbjct: 64 KEAKQVCPEVVI-----VLGE-DLTRFRNASKELYLYLRGFVWGEKVEKLGFDEVFFDVS 117
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM----EWLGQVYSDTDTSLM 176
D++ ++ + + L ++F F D D G M + G Y
Sbjct: 118 DMITYNVEMLNR---NDLEHSF---FHLDRRDP---TVGFMYDATAFKGHTYPAVPNPAA 168
Query: 177 ENTEDF--QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SIL 233
+ ++ L +A + +R + + + + GI+ +K+LAKLV HKP Q ++L
Sbjct: 169 NSQAEWLRTRLLVASHLANYLRNQLEYQKGYTATVGISTSKLLAKLVGNTHKPNSQTTLL 228
Query: 234 P---------QSSVSMLYANLSIKKVRHLGGKLGDEVVETL 265
P +S+V I+K+ +G K+ +++ L
Sbjct: 229 PPYTAAEHTAESNVIEFLDTYEIRKIPGIGSKIAHKLMSYL 269
>gi|317128461|ref|YP_004094743.1| DNA-directed DNA polymerase [Bacillus cellulosilyticus DSM 2522]
gi|315473409|gb|ADU30012.1| DNA-directed DNA polymerase [Bacillus cellulosilyticus DSM 2522]
Length = 423
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 77/130 (59%), Gaps = 8/130 (6%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M S+II +DM+ FY VE + +L GKP+A+ + G ++ +YEAR +GV M
Sbjct: 1 MPSKIIFHVDMNSFYASVEAAYDSTLMGKPVAIAGNAEARRGIVVTSSYEARARGVKPPM 60
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
EA + CPE+ + R P + +YR+A + + +L E + +VE SIDE Y+D+T
Sbjct: 61 PLWEALKKCPEL-VVREP------NFERYRHASKRMFQLLYEITPLVEPVSIDEGYLDVT 113
Query: 121 DVVHERMKSI 130
D VH +M++I
Sbjct: 114 D-VHLKMQAI 122
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 20/152 (13%)
Query: 207 CSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGG-------KLGD 259
CS G+A NK LAK+ + KP +IL + V L ++ +G KLG
Sbjct: 140 CSIGVAPNKFLAKMASDMKKPMGITILRKREVQTRLWPLKAIEMHGIGAKTADKLNKLGI 199
Query: 260 EVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVS--KSIGCC 317
+E + S L L K L + E+ A GID PV+ V KSIG
Sbjct: 200 HTIEDIALSDPLYL-KAKLGIVGERIHER--------ANGIDQRPVDPLAVEEFKSIGNS 250
Query: 318 KRFPGKTCLATRQDVSHWIQELADEVCERLED 349
P + T+ + I L+D V R+ +
Sbjct: 251 TTLPTDSKNVTQ--IKKVIMNLSDSVGRRIRN 280
>gi|8569099|gb|AAF76444.1|AC015445_11 Contains similarity to DINP protein from Homo sapiens gb|AF194973
and contains an IMS PF|00817 domain [Arabidopsis
thaliana]
Length = 435
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 133/305 (43%), Gaps = 83/305 (27%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV---NYEARHKGVTRH 59
SRI +DMD FY VE +PS+ GKP+AV GG+ + NYEAR GV
Sbjct: 102 SRIWLHVDMDAFYAAVETLSDPSIKGKPMAV--------GGLSMISTANYEARKFGVRAA 153
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M G A++ CP +L VP D +KY + V + S+DEAY+D+
Sbjct: 154 MPGFIARKLCP--DLIFVP-----VDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYLDI 206
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
T+V ER S G IA E+ R + VYS+T +
Sbjct: 207 TEVCRERGLSGGEIA------------------EELRSS--------VYSETGLT----- 235
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
CSAG+A N++LAK+ ++KP Q +L Q+ S
Sbjct: 236 ---------------------------CSAGVAANRLLAKVCSDINKPNGQFVL-QNDRS 267
Query: 240 MLYANLSIKKVRHLG--GKLGDEVV-ETLQCSTMLEL-EKFSLKQLQSHFEEKTASWLYY 295
+ +S VR +G GK+ + ++ + L T E+ +K SL L + F + +A +
Sbjct: 268 TVMTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSL--LYALFSQSSADFFLS 325
Query: 296 IARGI 300
+ G+
Sbjct: 326 VGLGL 330
>gi|386714738|ref|YP_006181061.1| DNA polymerase IV [Halobacillus halophilus DSM 2266]
gi|384074294|emb|CCG45787.1| DNA polymerase IV [Halobacillus halophilus DSM 2266]
Length = 414
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE +P L GKPLA+ + G ++ +YEAR GV M
Sbjct: 9 GRVIFHVDMNSFYASVEMAFDPKLKGKPLAIAGNPEERRGIVVTSSYEARKFGVKTTMPV 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EA++ CPE+ + R + +YR A +E+ +L++ +++V+ SIDE Y+D+T+
Sbjct: 69 GEARRLCPELMVMR-------PNFERYRTASKEMFKILADVTSLVQPVSIDEGYMDITN 120
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 38/247 (15%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I E I+ + + CS GIA NK LAK+ + KP +IL + + L I+++
Sbjct: 130 IAERIQQRIADELDLPCSIGIAPNKFLAKMASDMKKPMGITILRKRDLQNKLWPLPIEEM 189
Query: 251 RHLGGKLGDEV----VET---LQCSTMLELEKF---SLKQLQSHFEEKTASWLYYIARGI 300
+G K +++ VET L +LEL++ + ++LQ+ A G
Sbjct: 190 YGVGDKTAEKLRRIKVETIGDLAVHPVLELKRLLGINGERLQNR------------ANGY 237
Query: 301 DHEPVNARLVS--KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
D PV+ V KSIG P T Q+V +++L +V R+++ L +
Sbjct: 238 DQRPVDPDAVHEFKSIGTSTTLPEDTT--DDQEVRSVLRKLTHKVEARMKNKKVLAQ-NV 294
Query: 359 QLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLG 418
QL+ + D K + SR + +D+ +VS+Q+ ++ + PI LG
Sbjct: 295 QLM----IRYHDRKTVTRSRQLKEFIQSAEDLFQVSLQLFDEHWNQEPIR-------LLG 343
Query: 419 LSASKFS 425
++A +
Sbjct: 344 ITAQDLA 350
>gi|423585371|ref|ZP_17561458.1| DNA polymerase IV [Bacillus cereus VD045]
gi|401234014|gb|EJR40500.1| DNA polymerase IV [Bacillus cereus VD045]
Length = 412
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+T+
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITNC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|77457422|ref|YP_346927.1| DNA polymerase IV [Pseudomonas fluorescens Pf0-1]
gi|123605726|sp|Q3KH18.1|DPO4_PSEPF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|77381425|gb|ABA72938.1| putative DNA polymerase IV [Pseudomonas fluorescens Pf0-1]
Length = 353
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 20/130 (15%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I +D DCFY +E + +PSL GKPLAV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHVDCDCFYAAIEMRDDPSLAGKPLAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + YR A +E+ + S++++++E S+DE
Sbjct: 54 GVRSAMSSGHALKLCPDLTIV-------KPRMDAYREASKEIHTIFSDYTDLIEPLSLDE 106
Query: 115 AYIDLTDVVH 124
AY+D++D H
Sbjct: 107 AYLDVSDSAH 116
Score = 47.8 bits (112), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I ++IR V ++ SAG+A NK LAK+ KP ++ V + L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWRKPNGLFVITPDQVEEFVSGLPVSKL 183
Query: 251 RHLG-------GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+G GKLG C + E +K +L + F E+ L+ +ARGID
Sbjct: 184 HGVGKVTADKLGKLGIN-----DCLQLREWDKLALVREFGSFGER----LWSLARGIDER 234
Query: 304 PVN 306
V+
Sbjct: 235 LVH 237
>gi|67971498|dbj|BAE02091.1| unnamed protein product [Macaca fascicularis]
Length = 637
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 124/247 (50%), Gaps = 33/247 (13%)
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M +AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DL
Sbjct: 1 MNVRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 54
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
T++V +R++ + + +LS V G VY++ +L +
Sbjct: 55 TEMVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLHDIL 91
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSV 238
L I I E+R A+ + AG+A NK+LAKLV G+ KP +Q++ LP+S
Sbjct: 92 H--IRLLIGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQ 149
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
++ + IK++ +G K + +E L +++ +L+ FS K L+ A + ++
Sbjct: 150 HLILSLNHIKEIPGIGYKTA-KCLEALGINSVHDLQTFSSKILEKELGISLAQRIQKLSF 208
Query: 299 GIDHEPV 305
G D+ V
Sbjct: 209 GEDNSHV 215
>gi|408356556|ref|YP_006845087.1| DNA polymerase IV [Amphibacillus xylanus NBRC 15112]
gi|407727327|dbj|BAM47325.1| DNA polymerase IV [Amphibacillus xylanus NBRC 15112]
Length = 415
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +D++ FY VE NPSL GKPLA+ + G I+ +YEAR KG+ M
Sbjct: 9 GRVIFHVDINSFYASVEAAYNPSLKGKPLAIAGNPEERRGIIVTSSYEARAKGIKTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK CP EL +P + +YR+A +E+ +++E + +V+ SIDE Y+D+TD
Sbjct: 69 WQAKNLCP--ELIVLPP-----NFDRYRHASQEIFKLMAEITPLVQPVSIDEGYLDITD 120
Score = 43.9 bits (102), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 207 CSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEV--VET 264
CS GIA NK LAK+ + KP ++L + I+++ +G K D++ +
Sbjct: 146 CSIGIAPNKFLAKMASDMKKPMGITVLRIRDLPKKLWPRQIEEMYGVGEKTADKLRRIGV 205
Query: 265 LQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVS--KSIGCCKRFPG 322
+ ++E ++F+L+++ E+ L A+GID PV+ + KSIG +
Sbjct: 206 NKIGDLVEADRFTLRRILGVNGER----LQERAKGIDPSPVDPDAIYDFKSIGNSETLRE 261
Query: 323 KTCLATRQDVSHWIQELADEVCERLE 348
T T ++ ++ LA +V RLE
Sbjct: 262 DTTDETV--IATLLRRLARKVAVRLE 285
>gi|159528146|ref|YP_001542709.1| DNA-damage inducible protein P [Fluoribacter dumoffii Tex-KL]
gi|159157991|dbj|BAF92680.1| DNA-damage inducible protein P [Fluoribacter dumoffii Tex-KL]
Length = 379
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 134/319 (42%), Gaps = 83/319 (26%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHKGV 56
+R I IDMDCFY +E + P L KP+AV GG G+IA NY AR GV
Sbjct: 9 TRKIIHIDMDCFYAAIEMRDFPELANKPIAV-------GGAADRRGVIATCNYAARAFGV 61
Query: 57 TRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAY 116
M +A + C + L V + YRN + + A+ E Y
Sbjct: 62 RSAMSTAQALKLCHHLVLRPV-------RMEVYRNESQYIRALFEE-------------Y 101
Query: 117 IDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSL 175
DL + P + DE Y D TD+S
Sbjct: 102 TDLIE--------------------------PLSLDE-------------AYLDVTDSSN 122
Query: 176 MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQ 235
+ + A + +E+RA + Q SAGIA NK LAK+ HKP Q ++
Sbjct: 123 CKGS--------ATWMAQELRARIYQTRQLTASAGIAPNKSLAKIASDWHKPNGQKVIRP 174
Query: 236 SSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY 295
++ +L ++K+ +G K+ +E ++TL T +L +S++ L + F LY
Sbjct: 175 EEIAAFMLDLPVRKLFGVGPKM-EEKLKTLNIKTCGDLHHYSMEYLTNEF-GVMGQRLYD 232
Query: 296 IARGIDHEPVNARLVSKSI 314
+ARG+D PVN + KSI
Sbjct: 233 LARGVDERPVNPERIRKSI 251
>gi|229013356|ref|ZP_04170496.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus mycoides DSM 2048]
gi|423368199|ref|ZP_17345631.1| DNA polymerase IV [Bacillus cereus VD142]
gi|423591856|ref|ZP_17567887.1| DNA polymerase IV [Bacillus cereus VD048]
gi|423674087|ref|ZP_17649026.1| DNA polymerase IV [Bacillus cereus VDM062]
gi|228747949|gb|EEL97814.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus mycoides DSM 2048]
gi|401081417|gb|EJP89693.1| DNA polymerase IV [Bacillus cereus VD142]
gi|401231989|gb|EJR38491.1| DNA polymerase IV [Bacillus cereus VD048]
gi|401309638|gb|EJS14971.1| DNA polymerase IV [Bacillus cereus VDM062]
Length = 412
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPFSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|163941893|ref|YP_001646777.1| DNA polymerase IV [Bacillus weihenstephanensis KBAB4]
gi|229134960|ref|ZP_04263766.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus BDRD-ST196]
gi|423518849|ref|ZP_17495330.1| DNA polymerase IV [Bacillus cereus HuA2-4]
gi|423669733|ref|ZP_17644762.1| DNA polymerase IV [Bacillus cereus VDM034]
gi|163864090|gb|ABY45149.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
gi|228648462|gb|EEL04491.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus BDRD-ST196]
gi|401159904|gb|EJQ67283.1| DNA polymerase IV [Bacillus cereus HuA2-4]
gi|401298860|gb|EJS04460.1| DNA polymerase IV [Bacillus cereus VDM034]
Length = 412
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEQIQPFSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|206976238|ref|ZP_03237146.1| putative DNA-damage-inducible protein P [Bacillus cereus H3081.97]
gi|217961637|ref|YP_002340207.1| DNA polymerase IV [Bacillus cereus AH187]
gi|222097593|ref|YP_002531650.1| DNA polymerase iv [Bacillus cereus Q1]
gi|229140880|ref|ZP_04269425.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus BDRD-ST26]
gi|375286151|ref|YP_005106590.1| DNA-damage-inducible protein P [Bacillus cereus NC7401]
gi|423354645|ref|ZP_17332270.1| DNA polymerase IV [Bacillus cereus IS075]
gi|423374048|ref|ZP_17351387.1| DNA polymerase IV [Bacillus cereus AND1407]
gi|423566890|ref|ZP_17543137.1| DNA polymerase IV [Bacillus cereus MSX-A12]
gi|206745434|gb|EDZ56833.1| putative DNA-damage-inducible protein P [Bacillus cereus H3081.97]
gi|217065280|gb|ACJ79530.1| putative DNA-damage-inducible protein P [Bacillus cereus AH187]
gi|221241651|gb|ACM14361.1| possible DNA-damage-inducible protein P, DNA polymerase IV
[Bacillus cereus Q1]
gi|228642670|gb|EEK98956.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus BDRD-ST26]
gi|358354678|dbj|BAL19850.1| DNA-damage-inducible protein P, putative [Bacillus cereus NC7401]
gi|401086491|gb|EJP94714.1| DNA polymerase IV [Bacillus cereus IS075]
gi|401094863|gb|EJQ02933.1| DNA polymerase IV [Bacillus cereus AND1407]
gi|401215405|gb|EJR22122.1| DNA polymerase IV [Bacillus cereus MSX-A12]
Length = 412
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I + ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQVLLTELQLPCSIGIAPN 153
>gi|156378469|ref|XP_001631165.1| predicted protein [Nematostella vectensis]
gi|156218200|gb|EDO39102.1| predicted protein [Nematostella vectensis]
Length = 483
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 146/338 (43%), Gaps = 53/338 (15%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR I +DMD FY VE + +PSL KP+AV + NY AR GV M G
Sbjct: 83 SRTIVHVDMDAFYAAVEMRDDPSLKDKPMAVGSTSMLSTS-----NYPARRYGVRAAMPG 137
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP + + VP KYR + V + E+ S+DEAY+DLTD
Sbjct: 138 FIAKKLCPHLII--VP-----LHFDKYRAVSKIVRGIFREYDPRFVPMSLDEAYLDLTDY 190
Query: 123 VHERMK-----------------SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG 165
+ ER + S G + S+ S G + E V E +G
Sbjct: 191 LIERQRKTEKRLFYKKVYRQTSPSAGVPSESESSE----ACGSNTAQESENVPSVAESVG 246
Query: 166 QVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLH 225
+ +E D ++ +V+EIR + ++TQ SAGIA N +LAK+ +
Sbjct: 247 EP--------IEFGNDVKD------VVQEIRFRIENETQLTASAGIACNVLLAKVCTDCN 292
Query: 226 KPQKQSILP--QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS 283
KP Q L + + L I+K+ + G++ +++++ L T +L F + L
Sbjct: 293 KPNGQFYLKPDREEIVSFVKTLPIRKISGI-GRVSEQMLKALGVITCADL--FEKRDLLV 349
Query: 284 HFEEKTAS-WLYYIARGIDHEPVNARLVSKSIGCCKRF 320
+S +L +A G+ + KS+G + F
Sbjct: 350 LLHSDISSRFLIEVALGLGATRLETDRGRKSLGTERTF 387
>gi|449299005|gb|EMC95019.1| hypothetical protein BAUCODRAFT_91554 [Baudoinia compniacensis UAMH
10762]
Length = 576
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 127/269 (47%), Gaps = 25/269 (9%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I D DCFY V NPSL P AV Q + I+ NYEAR +G+ +
Sbjct: 12 GRVIIHFDYDCFYAAVFEAKNPSLKSLPFAVQQKHI-----IVTCNYEARRRGLYKLQLI 66
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLT 120
+A++ CP++ + DISK+R+A +E+ L +S VER DE ++D+T
Sbjct: 67 RDARRMCPDV------IIELGEDISKFRDASKELYTFLKAYSWNGKVERLGFDEVWLDVT 120
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDE---DARKAGVMEWLGQVYSDTDTSLME 177
D+V M+++ + L +F D D DA + + D SL +
Sbjct: 121 DMVDYNMQTLNR---NHLGQSFFQTSHDDPMDGFSFDASNLASHAYPANYAHNQDASLDD 177
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILP-- 234
T L + + +R + + + + GIA +K+L+KLV L+KP+ Q +++P
Sbjct: 178 LT---LRLRLGSHLALHMRHQLEQQKGYTSTVGIATSKLLSKLVGNLNKPKGQTTLMPPL 234
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVE 263
+++ I KV +G KL ++ E
Sbjct: 235 ETTAQTFMDGHDIGKVPGIGFKLAQKLRE 263
>gi|423512255|ref|ZP_17488786.1| DNA polymerase IV [Bacillus cereus HuA2-1]
gi|402449226|gb|EJV81063.1| DNA polymerase IV [Bacillus cereus HuA2-1]
Length = 412
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPFSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|381210251|ref|ZP_09917322.1| DNA polymerase IV [Lentibacillus sp. Grbi]
Length = 416
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE NP L GKPLA+ + G ++ +YEAR KGV M+
Sbjct: 9 GRVIFHVDMNSFYASVEMAYNPELKGKPLAIAGNPEERKGIVVTSSYEARAKGVKTTMQL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A++ CPE+ + R + +YR A +E+ L+E + ++ SIDE Y+D+T
Sbjct: 69 WQARRLCPELIVLR-------PNFDRYRTASKEIFQTLAEITPYIQPVSIDEGYMDIT 119
Score = 41.6 bits (96), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 207 CSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQ 266
CS GIA NK LAK+ + KP ++L + +S L I+++ +G K + + +
Sbjct: 146 CSIGIAPNKFLAKMASDMKKPMGITVLRKRDISEKLWPLPIEEMYGVGEKTAKK-LRSFD 204
Query: 267 CSTMLEL---EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVS--KSIGCCKRFP 321
T+ +L + + LKQ+ E+ L A GID PV+ V KSIG +
Sbjct: 205 IKTIGDLANGDPYQLKQILGINGER----LQNKANGIDTRPVDPEAVHEFKSIGSSQTLA 260
Query: 322 GKTCLATRQDVSHWIQELADEVCERL 347
T ++ + +LA+ V R+
Sbjct: 261 EDTI--DEAEIRKLMHKLAENVERRM 284
>gi|229168890|ref|ZP_04296607.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus AH621]
gi|228614482|gb|EEK71590.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus AH621]
Length = 418
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 15 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 74
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 75 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPFSIDEGYLDITDC 127
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 128 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 159
>gi|315042986|ref|XP_003170869.1| hypothetical protein MGYG_06860 [Arthroderma gypseum CBS 118893]
gi|311344658|gb|EFR03861.1| hypothetical protein MGYG_06860 [Arthroderma gypseum CBS 118893]
Length = 603
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 34/243 (13%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR+I D DCFY V NP+L PLAV Q ++ NYEAR +G+ +
Sbjct: 16 SRVILHFDYDCFYASVFEAENPALKTLPLAVQQKQI-----VVTCNYEARRRGLRKLQLI 70
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSE--FSNIVERASIDEAYIDLT 120
+AK+ CP++ + V G+ D++K+R+ + + + L +S+ ER DE ++D+T
Sbjct: 71 KDAKRICPDVVI-----VLGE-DLTKFRDVSKGLYSFLKSLTWSDQAERLGFDEVFLDVT 124
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVY-SDTDTSLMENT 179
++ ++ + A + N+F + D D G E+ VY T SL +N
Sbjct: 125 SMIDYNLQWL----APNVRNSFFL------LDRDDFTVG-FEYDPTVYCGPTSPSLDDNF 173
Query: 180 EDF---------QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ 230
+ + Q L +A + IR + K + + GI+ +K+L+KL +HKP+ Q
Sbjct: 174 QPWRGSPPSELGQRLILASHLANYIRKQLEEKHGYTSTVGISTSKLLSKLAGNVHKPRNQ 233
Query: 231 SIL 233
+ L
Sbjct: 234 TTL 236
>gi|163786797|ref|ZP_02181245.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
gi|159878657|gb|EDP72713.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
Length = 369
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 145/345 (42%), Gaps = 72/345 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY V NP L GKP+AV K G I A +YEAR GV M G
Sbjct: 8 RKIIHVDMDAFYASVAQMDNPELKGKPIAVG--GGGKRGVISAASYEARKFGVKSAMSGR 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A++ CPE+ R D +Y S I +R I + + D TD+V
Sbjct: 66 LAEKLCPELIFVR-------TDFERY--------------SEISKR--IRKIFYDYTDLV 102
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ TE+
Sbjct: 103 E-----------------------PLSLDE--------------------AYLDVTENKI 119
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
L A +I ++IR + + SAGI+ NK +AK+ +KP Q + V
Sbjct: 120 GLPSATLIAQKIRQRIFDEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPEDVLQFLE 179
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L I+K + GK+ E + T +L+ S L+ +F + S+ Y+I RGI +
Sbjct: 180 DLDIRKFYGV-GKVTAEKMYQKGIFTGKDLKSKSADYLEKNFGKSGRSY-YHIVRGIHNS 237
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
V + KS+ + F + L++ + ++++A+EV +RL+
Sbjct: 238 KVKPNRIRKSLAAERTF--RENLSSEIFMLEKLRQIAEEVSKRLD 280
>gi|433463201|ref|ZP_20420761.1| DNA polymerase IV [Halobacillus sp. BAB-2008]
gi|432187847|gb|ELK45099.1| DNA polymerase IV [Halobacillus sp. BAB-2008]
Length = 415
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE +P+L GKPLA+ + G ++ +YEAR GV M
Sbjct: 10 GRVIFHVDMNSFYASVEAAYDPALKGKPLAIAGNPEERKGIVVTSSYEARKYGVKTTMLV 69
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R + +YR A +E+ +LS+ + V+ SIDE Y+D+TD
Sbjct: 70 GEAKRLCPDLIVMR-------PNFERYRAASKEMFKILSDVTPTVQPVSIDEGYMDITD 121
Score = 47.8 bits (112), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 32/244 (13%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I E+I+ + ++ CS GIA NK LAK+ + KP +IL + + L I+++
Sbjct: 131 IAEKIQQRIANELDLPCSIGIAPNKFLAKMASDMKKPMGITILRKRKLDEQLWPLPIEEM 190
Query: 251 RHLGGK-------LGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+G K LG E + L + LEL++ L + E L A G+D
Sbjct: 191 YGVGQKTAEKLRRLGIENIGHLASHSALELKRV----LGINGER-----LKNRANGLDDR 241
Query: 304 PVNARLVS--KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLL 361
PV+ V KSIG P T ++ ++ L+ +V R++ L R QL+
Sbjct: 242 PVDPDAVHEFKSIGTSTTLPADTV--DDHEIRSVLRRLSGKVEARMKSKNVL-ARNVQLM 298
Query: 362 TVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSA 421
+ D K + SR + D+ ++++++ ++ + P+ LG++A
Sbjct: 299 ----IRYHDRKTVTRSRQLRDFIATTDDLFQIAIRLFDEHWNQQPVR-------LLGVTA 347
Query: 422 SKFS 425
S +
Sbjct: 348 SDLA 351
>gi|415885417|ref|ZP_11547345.1| DNA polymerase IV [Bacillus methanolicus MGA3]
gi|387591086|gb|EIJ83405.1| DNA polymerase IV [Bacillus methanolicus MGA3]
Length = 427
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE +PSL GKPLA+ + G I+ +YEAR GV M
Sbjct: 9 GRVILHVDMNSFYASVEMSYDPSLKGKPLAIAGDAEERRGIIVTCSYEARKFGVKTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R P + +YR ++ +L ++S++VE SIDE Y+D+TD
Sbjct: 69 WEAKKLCPQL-IIRKP------NFERYRAVSIKIFEILRQYSDLVEPVSIDEGYMDITD 120
>gi|424778602|ref|ZP_18205549.1| DNA-directed DNA polymerase [Alcaligenes sp. HPC1271]
gi|422886604|gb|EKU29019.1| DNA-directed DNA polymerase [Alcaligenes sp. HPC1271]
Length = 389
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 146/384 (38%), Gaps = 92/384 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAV----------VQYNTWK--------GGGII 45
R IA +DMD FY VE P L G P+ + + +W+ G G+
Sbjct: 11 RRIAHVDMDAFYASVELLRYPHLRGSPVVIGGRSADAPRQLPDGSWQHARLADYVGRGVA 70
Query: 46 AVN-YEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS 104
+ YEAR GV M +A Q P+ L AD YR+ R ++ S
Sbjct: 71 TTSTYEARQLGVFSAMGLMKAAQLAPDAILL-------PADFQAYRHYSRLFKQAVATVS 123
Query: 105 NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL 164
+ +E IDE
Sbjct: 124 DHIEDRGIDE-------------------------------------------------- 133
Query: 165 GQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGL 224
+Y D L TED ELA E+IR AV T CS GI NK+L+K+ L
Sbjct: 134 --IYVD----LSHKTEDSHELA------EQIRQAVNQATGLTCSVGITPNKLLSKIASEL 181
Query: 225 HKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH 284
+KP +L V L++ K+ +G K ++ E + + EL ++LQ
Sbjct: 182 NKPNGACVLTMDDVPTRIWPLAVGKINGIGPKSVVKLTE-MGIQKIGELAATPAEKLQEQ 240
Query: 285 FEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVC 344
F + A WL +A+G D P++ KSI F + L R D S + + + +C
Sbjct: 241 FGLRYAQWLMAVAQGQDERPLSTDRTPKSISRETTF--ERDLHVRMDRSR-LSAVLESLC 297
Query: 345 ERLEDDLTLNKRRAQLLTVSFTQE 368
E+LE DL + AQ + + E
Sbjct: 298 EKLEQDLRKSAMCAQTIGIKLKFE 321
>gi|423489327|ref|ZP_17466009.1| DNA polymerase IV [Bacillus cereus BtB2-4]
gi|423495050|ref|ZP_17471694.1| DNA polymerase IV [Bacillus cereus CER057]
gi|423498158|ref|ZP_17474775.1| DNA polymerase IV [Bacillus cereus CER074]
gi|423661008|ref|ZP_17636177.1| DNA polymerase IV [Bacillus cereus VDM022]
gi|401151143|gb|EJQ58595.1| DNA polymerase IV [Bacillus cereus CER057]
gi|401160207|gb|EJQ67585.1| DNA polymerase IV [Bacillus cereus CER074]
gi|401301049|gb|EJS06638.1| DNA polymerase IV [Bacillus cereus VDM022]
gi|402431563|gb|EJV63627.1| DNA polymerase IV [Bacillus cereus BtB2-4]
Length = 412
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPFSIDEGYLDITD 120
>gi|374599088|ref|ZP_09672090.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|423324227|ref|ZP_17302068.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
gi|373910558|gb|EHQ42407.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|404608618|gb|EKB08077.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
Length = 357
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 132/317 (41%), Gaps = 70/317 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE NP L GK A+V + + G + A +YEAR GV M G
Sbjct: 3 RKIIHIDMDAFYASVEQLDNPELRGK--AIVVGGSSERGVVAAASYEARQYGVRSAMSGI 60
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AK+ CP L VP +Y+ R++ V E++++VE ++DEA++D+T+
Sbjct: 61 LAKKKCPH--LIFVPP-----RFDRYKEISRQIRQVFHEYTDLVEPLALDEAFLDVTE-- 111
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
IG +A+ ++ + + E T Q
Sbjct: 112 ----NKIGCPSATLIAQ-----------------------------EIRQKIFERT---Q 135
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
A AG+ + + A V S +KP Q + V
Sbjct: 136 LTASAGISINKFLAKVASD---------------------YNKPNGQKTINPEEVEAFLE 174
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L IKK +G K D + T +L+ S+ L+ HF + ++ YYI RGI +
Sbjct: 175 ALEIKKFFGIGKKTADRMYH-FGIFTGRDLKAKSIDFLEEHFGKAGKAY-YYIVRGIHNS 232
Query: 304 PVNARLVSKSIGCCKRF 320
PV+ ++KS+G + F
Sbjct: 233 PVSPDRLTKSVGTERTF 249
>gi|423598538|ref|ZP_17574538.1| DNA polymerase IV [Bacillus cereus VD078]
gi|401236808|gb|EJR43265.1| DNA polymerase IV [Bacillus cereus VD078]
Length = 412
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPFSIDEGYLDITD 120
>gi|256822627|ref|YP_003146590.1| DNA-directed DNA polymerase [Kangiella koreensis DSM 16069]
gi|256796166|gb|ACV26822.1| DNA-directed DNA polymerase [Kangiella koreensis DSM 16069]
Length = 369
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 132/321 (41%), Gaps = 89/321 (27%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHKGVT 57
R I +DMDC+Y +E + +PSL P+AV GG G+IA NYEAR GV
Sbjct: 12 RKIIHVDMDCYYAAIEMRDDPSLQNHPIAV-------GGSPDRRGVIATCNYEARSYGVR 64
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M A++ CP L VP + KYR+ + + + +++++++E S+DEAY+
Sbjct: 65 SAMPSAYARRLCPG--LIIVPP-----NFDKYRHDSKVIRDIFAQYTDLIEPLSLDEAYL 117
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
D+TD E S +IA + F
Sbjct: 118 DVTDCT-EYKGSATYIAQAIRYQIF----------------------------------- 141
Query: 178 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSS 237
E Q A AGV A NK LAK+ +KP Q +L
Sbjct: 142 --EKLQLTASAGV---------------------APNKFLAKIASDWNKPNGQFVLTPDE 178
Query: 238 VSMLYANLSIKKVRHLGGKLGDEV----VETLQCSTMLELEKFSLKQLQSHFEEKTASWL 293
V L + K+ +G K ++ +ET C + E++ +L + F ++ L
Sbjct: 179 VEGFVERLPVNKIHGVGKKTAEKFQRMGIET--CKELREVDLLTLSKTFGSFGQR----L 232
Query: 294 YYIARGIDHEPVNARLVSKSI 314
Y ++RGID+ V KS+
Sbjct: 233 YELSRGIDNRKVITHYPRKSL 253
>gi|223934355|ref|ZP_03626276.1| DNA-directed DNA polymerase [bacterium Ellin514]
gi|223896818|gb|EEF63258.1| DNA-directed DNA polymerase [bacterium Ellin514]
Length = 368
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 149/346 (43%), Gaps = 70/346 (20%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
+I +DMD FY VE + NP L GKPL V T + G + A +YEAR GV M
Sbjct: 4 VIFHLDMDAFYASVEQRDNPELRGKPLIVGAPPTQR-GVVCAASYEARKFGVRSAMPSVV 62
Query: 65 AKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
AK+ CP+ +R + D YR +++ +++ I+E+ SIDEAY+DL+ V
Sbjct: 63 AKRLCPDGFF-----IRPRMD--HYRAESNQIMQIVAASGAIIEQVSIDEAYLDLSPVCQ 115
Query: 125 ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE 184
SD D+SL+
Sbjct: 116 R-------------------------------------------SDLDSSLLS------- 125
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN 244
A + +++ + S+ S GIA NK+LAK+ +KP +++P+ +
Sbjct: 126 ---AVPLAAQLKDKIFSERGLTTSIGIASNKLLAKIASDFNKPNGLTLIPERDKVLFLRP 182
Query: 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKF--SLKQLQSHFEEKTASWLYYIARGIDH 302
+ I+ + + G++ +E+++ T+ +L+ F L+ + F L + G D+
Sbjct: 183 MPIRAIPGV-GRVTEEMLKKSGVETIGDLQDFPGDLRSMVGSF----GPTLKRFSFGEDN 237
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
++ V KSI F T R+ + ++E A+E+ +L+
Sbjct: 238 RQLDTGDVIKSISSENTFLKDT--EDRKILKTCLREQAEEIAAKLK 281
>gi|409122245|ref|ZP_11221640.1| DNA polymerase IV 2 [Gillisia sp. CBA3202]
Length = 366
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 147/345 (42%), Gaps = 72/345 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE NP L KP+AV + + G + A +YEAR GV M
Sbjct: 8 RKIIHIDMDAFYASVEQLDNPDLRNKPVAVG--GSSERGVVSAASYEARKFGVKSAMSSV 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AK++CP + KA +Y+ ++ A+ +++ TD+V
Sbjct: 66 IAKRNCPNLIFV-------KARFDRYKEISSQIRAI----------------FLEYTDLV 102
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ TE+ +
Sbjct: 103 E-----------------------PLSLDE--------------------AYLDVTENKK 119
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+ A +I +EIR + KT + SAGI+ NK +AK+ ++KP Q + V
Sbjct: 120 GIPSATLIAQEIREKIKEKTGLNASAGISINKFIAKVASDINKPNGQKTVNPEEVEEFLE 179
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L I+K + GK+ E + L ++L+ S + L +F K+ + Y + RGI +
Sbjct: 180 QLQIRKFYGV-GKVTAEKMYRLGIFKGIQLKDKSEEFLTENF-GKSGKYYYNVVRGIHNS 237
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
V A + KS+G + F +A+ + ++ +A+E+ RL+
Sbjct: 238 EVKADRIRKSLGAERTFS--ENIASEIFMMERLENIAEEIERRLK 280
>gi|398913758|ref|ZP_10656617.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM49]
gi|398179843|gb|EJM67442.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM49]
Length = 353
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 70/130 (53%), Gaps = 20/130 (15%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I +D DCFY +E + +P L GKPLAV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHVDCDCFYAAIEMRDDPRLAGKPLAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + YR A RE+ + E++ I+E S+DE
Sbjct: 54 GVRSAMSSGHALKLCPDLTIV-------KPRMDAYREASREIHTIFREYTEIIEPLSLDE 106
Query: 115 AYIDLTDVVH 124
AY+D++D H
Sbjct: 107 AYLDVSDSAH 116
Score = 47.4 bits (111), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I ++IR V ++ SAG+A NK LAK+ KP ++ V + L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSGLPVSKL 183
Query: 251 RHLG-------GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+G GKLG C + E +K +L + F E+ L+ +ARGID
Sbjct: 184 HGVGKVTADKLGKLG-----ITDCLQLREWDKLALVREFGSFGER----LWSLARGIDDR 234
Query: 304 PVN 306
V+
Sbjct: 235 VVH 237
>gi|223042103|ref|ZP_03612277.1| DNA polymerase IV [Actinobacillus minor 202]
gi|223017115|gb|EEF15553.1| DNA polymerase IV [Actinobacillus minor 202]
Length = 357
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 127/315 (40%), Gaps = 73/315 (23%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R I IDMDCFY VE + NP+L GKP+AV K G + NYEAR G+ M
Sbjct: 5 TRKIIHIDMDCFYAAVEMRENPTLQGKPIAVGGSAD-KRGVLTTCNYEARKFGLHSAMAT 63
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+A + CP + L V ++ Y++ ++ + +++++E S+DEAY+D+TD
Sbjct: 64 AQAFKRCPNLILLPV-------NMPLYKSVSEQIHQIFQRYTHLIEPLSLDEAYLDVTDC 116
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
+ AG W+ Q
Sbjct: 117 --------------------------------EKYAGSATWIAQA--------------- 129
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
IR + + + SAGIA K LAK+ +KP Q ++ V+
Sbjct: 130 ------------IRQDIWQELKLTASAGIAPLKFLAKIASDQNKPNGQFVITPEEVNGFI 177
Query: 243 ANLSIKKVRHLGGKLGDEVVET--LQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
L +KK+ +G +++++ QC + + K + Q F ++ L+ GI
Sbjct: 178 QTLPLKKIPGVGKVTHEKLIQMGFHQCQDVQKANKALIYQEFGKFGQR----LWDFCHGI 233
Query: 301 DHEPVNARLVSKSIG 315
D V KS+
Sbjct: 234 DPREVEVNRPRKSLA 248
>gi|375357444|ref|YP_005110216.1| putative DNA polymerase IV [Bacteroides fragilis 638R]
gi|301162125|emb|CBW21670.1| putative DNA polymerase IV [Bacteroides fragilis 638R]
Length = 364
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 152/352 (43%), Gaps = 80/352 (22%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD FY VE + +P L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MNERKIIHIDMDAFYASVEQRDHPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP +L VP G+ ++ Y++ R+V + E+++++E S+DEA++D+T
Sbjct: 59 SSQKAKRLCP--QLIFVP---GRMEV--YKSVSRQVHEIFHEYTDLIEPLSLDEAFLDVT 111
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT- 179
+ K G++ + D ++ +
Sbjct: 112 E----------------------------------NKQGIL-----LAVDIAKAIKQRIR 132
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
E+ +A AGV + A + S F G+ C +H Q + + +
Sbjct: 133 EELSLVASAGVSYNKFLAKIAS--DFRKPDGL----------CTIHPDQAIDFIARLPIE 180
Query: 240 MLY--ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-I 296
+ ++ +K+ LG + G ++ E CS+ + + +F LYY
Sbjct: 181 SFWGVGPVTARKMHLLGIRNGLQLRE---CSSEMLVRQFG-----------KVGLLYYDF 226
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
ARG+D PV A + KSIGC + + R V + +A E+ ERL+
Sbjct: 227 ARGVDLRPVEAVRIRKSIGCEHTL--EKDIHVRSSVIIELYHVATELVERLQ 276
>gi|218899309|ref|YP_002447720.1| DNA polymerase IV [Bacillus cereus G9842]
gi|218542397|gb|ACK94791.1| putative DNA-damage-inducible protein P [Bacillus cereus G9842]
Length = 412
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M E
Sbjct: 11 VILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPLWE 70
Query: 65 AKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
AK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 71 AKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDCYA 123
Query: 125 -----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 124 LGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|169828922|ref|YP_001699080.1| DNA polymerase IV [Lysinibacillus sphaericus C3-41]
gi|168993410|gb|ACA40950.1| DNA polymerase IV 1 [Lysinibacillus sphaericus C3-41]
Length = 411
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 11/151 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII ID++CFY VE +PSL GKP+A+ + G +I +YEAR GV M
Sbjct: 4 GRIILHIDLNCFYASVEQIYDPSLKGKPIAIAGNPKERRGIVITCSYEARKSGVYTTMNV 63
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EA++ CP EL +P + +YR A + +L E+S+I++ SIDE YI L +
Sbjct: 64 GEARRKCP--ELIVLP-----PNFDRYRAASKSFFGLLKEYSDILQPVSIDEGYIQLPII 116
Query: 123 ----VHERMKSIGHIAASQLSNTFVVGFGPD 149
V E + I + ++L +G P+
Sbjct: 117 EGQNVLEHVHGIQNRIWNELQLPCSIGIAPN 147
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 18/253 (7%)
Query: 192 VEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVR 251
V I+ + ++ Q CS GIA NK LAK+ + KP +IL + V + L +K++
Sbjct: 125 VHGIQNRIWNELQLPCSIGIAPNKFLAKMASDMRKPMGITILRKRDVPSVLWPLHVKEM- 183
Query: 252 HLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLV- 310
H GK E ++ L T+ EL L+ F L A G D PV+ +
Sbjct: 184 HGIGKSTAEKLKELGIQTIGELAAADEYTLKQKFGINGLR-LKQKANGEDDRPVDPEAIY 242
Query: 311 -SKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQET 369
+KS+G T R ++ + L+++V ERL+ K+ A + +
Sbjct: 243 DTKSVGNSTTLSHDT--TDRDELYKILTTLSEKVAERLK-----AKKLAGVTVSIIIRTA 295
Query: 370 DGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPLGS 429
+ + S+S+ A + +DIVE + + NK + P+ LG++ S S +
Sbjct: 296 SWETYTRSKSVNNAIFLKEDIVEQAWNLFNKNWNEEPVR-------LLGVTISNVSDIKE 348
Query: 430 HPSIQQFFKPQDH 442
FF ++H
Sbjct: 349 MTQQLTFFDFEEH 361
>gi|307254926|ref|ZP_07536747.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307259366|ref|ZP_07541093.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306862114|gb|EFM94087.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866602|gb|EFM98463.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
Length = 356
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 110/254 (43%), Gaps = 69/254 (27%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHM 60
T R I IDMDCFY +E + NP+L GKP+AV + +G G++ NYEAR G+ M
Sbjct: 3 TQRKIIHIDMDCFYAAIEMRENPALIGKPVAV--GGSVEGRGVLTTCNYEARKFGLHSAM 60
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + L VP ++ Y+ ++ + +++IVE S+DEAY+D+T
Sbjct: 61 PTAQALKRCPNLIL--VP-----VNMPLYKAVSEQIHQIFRRYTDIVEPLSLDEAYLDVT 113
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D Q S G W+ Q
Sbjct: 114 D-------------CRQCS-------------------GSATWIAQ-------------- 127
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
EIR A+ ++ SAGIA K LAK+ +KP Q ++ +++
Sbjct: 128 -------------EIRDAIWNELHLTASAGIAPLKFLAKIASDQNKPNGQFVISPENMTA 174
Query: 241 LYANLSIKKVRHLG 254
+L +KK+ +G
Sbjct: 175 FIYDLPLKKIPRVG 188
>gi|198276896|ref|ZP_03209427.1| hypothetical protein BACPLE_03101 [Bacteroides plebeius DSM 17135]
gi|198270421|gb|EDY94691.1| ImpB/MucB/SamB family protein [Bacteroides plebeius DSM 17135]
Length = 368
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 128/315 (40%), Gaps = 70/315 (22%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
T R I IDMD FY VE + +P L GKP+AV + K G + A +YEAR GV M
Sbjct: 3 TERKIIHIDMDAFYASVEQRDHPELRGKPIAVG--HAEKRGVVAAASYEARKFGVRSAMS 60
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ V G+ ++ K +A I E + D TD
Sbjct: 61 SQKAKKLCPQLIF-----VEGRMEVYKSVSA------------------QIHEIFHDYTD 97
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
++ P + DE + ++ TE+
Sbjct: 98 LIE-----------------------PISLDE--------------------AFLDVTEN 114
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+ + +A I +EI+ + + SAG+++NK LAK+ KP +
Sbjct: 115 KKGIPLAVDIAKEIKQRIRQELHLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQADEF 174
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L I+ + G + + + TL L K SL+ LQ F K + ARG+D
Sbjct: 175 IRRLPIEAFWGV-GPITAKKMHTLGIYNGETLRKCSLEMLQRQF-GKNGLIYFNFARGMD 232
Query: 302 HEPVNARLVSKSIGC 316
PV A V KSIGC
Sbjct: 233 DRPVEAVRVRKSIGC 247
>gi|282859359|ref|ZP_06268467.1| DNA polymerase IV [Prevotella bivia JCVIHMP010]
gi|424900698|ref|ZP_18324240.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Prevotella bivia DSM 20514]
gi|282587844|gb|EFB93041.1| DNA polymerase IV [Prevotella bivia JCVIHMP010]
gi|388592898|gb|EIM33137.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Prevotella bivia DSM 20514]
Length = 361
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 133/320 (41%), Gaps = 75/320 (23%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKG--GGIIAVNYEARHKGVTRHM 60
S+II IDMD F+ VE + NP L GKP+AV + G G + +YEAR GV
Sbjct: 2 SKIIH-IDMDAFFASVEQRDNPELRGKPVAV----GFDGARGVVSTASYEARKFGVHSAQ 56
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP + + + + +A +EV A I E + + T
Sbjct: 57 PIAQAKRLCPHLNI-----------VYPHFDAYKEV------------SAQIHEVFHEYT 93
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D++ P + DE + ++ TE
Sbjct: 94 DIIE-----------------------PISLDE--------------------AFLDVTE 110
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+ + L +A I +EI+ + +TQ SAGI++NK LAK+ + KP ++ +
Sbjct: 111 NKKGLELATDIAKEIKQKIFERTQLTASAGISYNKFLAKIASDMRKPNGMFLVHPTKALD 170
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
A L I+K +G K E + + T +L S + L F K + Y RGI
Sbjct: 171 FIATLPIEKFWGVGAKTA-EKMHFMGIFTGEQLRNVSRRHLVEVF-GKVGNTYYDFCRGI 228
Query: 301 DHEPVNARLVSKSIGCCKRF 320
DH PV KS+GC + F
Sbjct: 229 DHRPVIVERERKSVGCEQTF 248
>gi|156345284|ref|XP_001621312.1| hypothetical protein NEMVEDRAFT_v1g231426 [Nematostella vectensis]
gi|156207107|gb|EDO29212.1| predicted protein [Nematostella vectensis]
Length = 501
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 147/338 (43%), Gaps = 53/338 (15%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SR I +DMD FY VE + +PSL KP+AV + + NY AR GV M G
Sbjct: 82 SRTIVHVDMDAFYAAVEMRDDPSLKDKPMAVGSTSM-----LSTSNYPARRYGVRAAMPG 136
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP + + VP KYR + V + E+ S+DEAY+DLTD
Sbjct: 137 FIAKKLCPHLII--VP-----LHFDKYRAVSKIVRGIFREYDPRFVPMSLDEAYLDLTDY 189
Query: 123 VHERMK-----------------SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG 165
+ ER + S G + S+ S G + E V E +G
Sbjct: 190 LIERQRKTEKRLFYKKVYRQTSPSAGVPSESESSE----ACGSNTAQESENVPSVAESVG 245
Query: 166 QVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLH 225
+ +E D ++ +V+EIR + ++TQ SAGIA N +LAK+ +
Sbjct: 246 EP--------IEFGNDVKD------VVQEIRFRIENETQLTASAGIACNVLLAKVCTDCN 291
Query: 226 KPQKQSILP--QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS 283
KP Q L + + L I+K+ + G++ +++++ L T +L F + L
Sbjct: 292 KPNGQFYLKPDREEIVSFVKTLPIRKISGI-GRVSEQMLKALGVITCADL--FEKRDLLV 348
Query: 284 HFEEKTAS-WLYYIARGIDHEPVNARLVSKSIGCCKRF 320
+S +L +A G+ + KS+G + F
Sbjct: 349 LLHSDISSRFLIEVALGLGATRLETDRGRKSLGTERTF 386
>gi|300776039|ref|ZP_07085898.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
gi|300505172|gb|EFK36311.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
Length = 365
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 152/373 (40%), Gaps = 81/373 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE NP+L GKP+AV G + A +YEAR GV M
Sbjct: 8 RKIIHVDMDAFYASVEQHDNPTLKGKPIAV---GGQHRGVVAAASYEARKYGVRSAMPSK 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AK+ CP+ L VP ++Y+ ++ I E + + TD+V
Sbjct: 65 TAKEKCPQ--LIFVP-----PRFARYKEISKK----------------IREIFYEYTDLV 101
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ TE+ +
Sbjct: 102 E-----------------------PLSLDE--------------------AYLDVTENKK 118
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+ A +I +EIR + +T SAGI+ NK LAK+ ++KP Q + +
Sbjct: 119 GMESANLIAKEIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDKMEEFLE 178
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L ++K +G +++ +L +L+K SL+ L F K+ Y + RGI
Sbjct: 179 ELPVEKFYGVGKVTANKMF-SLGIYKGKDLKKKSLEDLIRIF-GKSGQHYYNVVRGIHTS 236
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD--------LTLNK 355
V + KS+ + F L Q ++ ++ LA E+ +RL+ + L +
Sbjct: 237 EVKPHRIQKSVAVERTF--FEDLLDEQQINEKLESLAQELHQRLQKNNILGRTLTLKIKY 294
Query: 356 RRAQLLTVSFTQE 368
+ L T S T+E
Sbjct: 295 KDFSLFTRSITKE 307
>gi|378821798|ref|ZP_09844657.1| putative DNA polymerase IV [Sutterella parvirubra YIT 11816]
gi|378599389|gb|EHY32418.1| putative DNA polymerase IV [Sutterella parvirubra YIT 11816]
Length = 363
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 126/319 (39%), Gaps = 78/319 (24%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
TSR I +DMD FY VE + N +L G+P+AV + G + +YEAR GV M
Sbjct: 10 TSRRIVHVDMDAFYASVEQRDNSALRGRPVAVGHAE--RRGVVATASYEARAFGVHSAMP 67
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EA + CP++ +A I+ YR+ + + +++ VE S+DEAY+D+T
Sbjct: 68 SREAMELCPQLIFV-------EARIAHYRDVSSSIHEIFHRYTDEVEPLSLDEAYLDVT- 119
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
H ++ G G E TE
Sbjct: 120 --HNKL-----------------GIG-----------------------------EGTE- 130
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
+ I++ + + SAG+++NK LAK+ KP +
Sbjct: 131 ---------VARRIKSDIRRELGLVASAGVSYNKFLAKIASDERKPDGLCTIHPDRAQAF 181
Query: 242 YANLSIKKVRHLG----GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
L ++K+ +G KL D L E+ + L HF A +Y
Sbjct: 182 IDGLKVEKLWGVGPATAAKLHD-----LGLHFCAEVRRKPFAYLVEHFGSSGAQ-IYKFV 235
Query: 298 RGIDHEPVNARLVSKSIGC 316
RGID PV+ R KS+GC
Sbjct: 236 RGIDTRPVDPRRERKSVGC 254
>gi|402587347|gb|EJW81282.1| ImpB/MucB/SamB family protein [Wuchereria bancrofti]
Length = 522
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 152/364 (41%), Gaps = 95/364 (26%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG---IIAVNYEARHKGVTRHMRG 62
I ID+DCF+ V + +P L GKP+A+ + +G G I + +YEAR +GV
Sbjct: 222 ICHIDLDCFFVSVALRTHPELIGKPVAITHSRSTEGAGMSEIASCSYEARARGVRNGCFI 281
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EA++ CP++ +C +P YR+ +E+ A+LS ++ + S DE Y+DL +
Sbjct: 282 KEARKVCPDL-IC-LPY-----QFDDYRHISKEIYAILSGYTLNIRAVSCDEMYVDLESL 334
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
E HI A VME
Sbjct: 335 CKEM-----HI------------------------ANVME-------------------- 345
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
I+ IR+ +L+KT + S GI + ++A++ KP Q ++ +
Sbjct: 346 --------IISVIRSEILTKTGCNASVGIGNTMLIARIATRHAKPNGQFMIKLDDI---- 393
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
DE+++ + EL K S+ +LQ+ EK + +Y + RG+D
Sbjct: 394 ----------------DELIKKKKFLLYPEL-KVSINRLQNLLGEKIGTQIYNMCRGVDK 436
Query: 303 EP-VNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLL 361
E ++V KSI C + + T++D + E ++C LE L + + A +
Sbjct: 437 ERNFLEKVVRKSISCDINYGIRF---TKED---EVMEFLGKMCSELEKKLHIARMTASTI 490
Query: 362 TVSF 365
T+
Sbjct: 491 TLRL 494
>gi|373465649|ref|ZP_09557104.1| putative DNA polymerase IV [Lactobacillus kisonensis F0435]
gi|371759899|gb|EHO48606.1| putative DNA polymerase IV [Lactobacillus kisonensis F0435]
Length = 368
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 169/405 (41%), Gaps = 79/405 (19%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIA-VNYEARHKGVTRH 59
++R I +DMD FY +E + +P+L KPL V + GG G++A NY AR GV
Sbjct: 6 SNRKIIHVDMDAFYASIEEREDPTLKTKPLIVARDPRTTGGRGVVATANYNARQFGVHSA 65
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M +A +ELC P + +R +G ++ +S A I + + D
Sbjct: 66 MSSQKA------LELC--PK-------AVFRFSGFDLYRSVS--------AQIHQIFYDF 102
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
T+ V +S+ L + Y D + +
Sbjct: 103 TEAV----ESVA--------------------------------LDEAYLDITANKHHIS 126
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
+ Q + I+ A+ +T+ CS G+++NK LAK KP +++ Q
Sbjct: 127 DPIQ-------VARMIQIAIWEETRLTCSVGVSYNKFLAKEASDYAKPVGITVIDQRDAI 179
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
L I+K R +G K + +E L+ + +L K+S L HF K LY ARG
Sbjct: 180 EFLKKLPIEKFRGVGKKTAPK-MEALKIANGADLLKWSQMDLIKHF-GKFGYVLYERARG 237
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD------LTL 353
+D PV + + KSIG + F + ++T +V +Q +A V + + D L L
Sbjct: 238 VDPRPVEYQRIRKSIGKERTFGPE--ISTAAEVDSQLQRIAQLVVKAMADKKKHGKTLVL 295
Query: 354 NKRRAQLLTVSFTQETDGKV-NSCSRSIALASYKLQDIVEVSMQV 397
R T + D + NS + ALAS L + ++S V
Sbjct: 296 KIRYKDFSTFTKRVTLDDYIKNSSANYFALASDLLAGMPDISTGV 340
>gi|365157781|ref|ZP_09354027.1| hypothetical protein HMPREF1015_00187 [Bacillus smithii 7_3_47FAA]
gi|363622680|gb|EHL73832.1| hypothetical protein HMPREF1015_00187 [Bacillus smithii 7_3_47FAA]
Length = 396
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE +PSL GKPLA+ + G ++ +YEAR GV M
Sbjct: 9 GRVILHVDMNSFYASVEMAYDPSLKGKPLAIAGDPKQRKGIVVTCSYEARKFGVKTTMPI 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CPE+ + + P + +YR + + +L E++++VE SIDE Y+D+T+
Sbjct: 69 WEAKKRCPEL-IVKPP------NFDRYRTLSQAIFNILREYTHLVEPVSIDEGYMDITE 120
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 29/233 (12%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D M+ TE + E I E+I+ + ++ S GIA NK LAK+ + KP +
Sbjct: 112 DEGYMDITESY-EWGTPIEIAEDIQKRLQNELDLPSSIGIAPNKFLAKMASNMKKPMGIT 170
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS-------H 284
IL + V + L ++++ +G K + + T+ T+ +L K + QL+S
Sbjct: 171 ILRKRDVPVRLWPLPVEEMHGVGEKTAAK-LRTIGIQTIGDLAKANDIQLRSLLGIIGVR 229
Query: 285 FEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVC 344
E+ R +D E VN R KSIG P + +++S +LA++V
Sbjct: 230 LRERANG---RDDRKVDPESVNER---KSIGNSMTLPQDA--ESEEELSEVTHKLAEKVS 281
Query: 345 ERLEDDLTLNKRRAQLL------TVSFTQETD------GKVNSCSRSIALASY 385
RL++ L + ++ T++ +++ D G + SR++ L +
Sbjct: 282 SRLKERGLLTTHLSVMIRFRNRHTITRSKKLDSPTDSVGDIQRISRALVLEHW 334
>gi|423483740|ref|ZP_17460430.1| DNA polymerase IV [Bacillus cereus BAG6X1-2]
gi|401141291|gb|EJQ48846.1| DNA polymerase IV [Bacillus cereus BAG6X1-2]
Length = 412
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEARENGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+T+
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITEC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPPEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|209694530|ref|YP_002262458.1| DNA polymerase IV [Aliivibrio salmonicida LFI1238]
gi|208008481|emb|CAQ78650.1| DNA polymerase IV [Aliivibrio salmonicida LFI1238]
Length = 350
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 72/365 (19%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M+ +II ID+DC+Y VE + NP L G P+A+ +G + NYEAR GV M
Sbjct: 1 MSQKIIH-IDLDCYYAAVEARDNPELRGIPIAIGGSQHHRGV-LSTCNYEAREFGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A Q CP + + VP ++ KY+ +++ + SE+++++E S+DEAY+D+T
Sbjct: 59 STAKALQLCPNLTV--VP-----GNMDKYKTVSKQIHKIFSEYTDLIEPLSLDEAYLDVT 111
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D + H +A+ ++ ED RK
Sbjct: 112 D------SPLFHGSATLIA-------------EDIRK----------------------- 129
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
+ ++ Q SAG+A K +AK+ + KP ++P + +
Sbjct: 130 -----------------TIWNELQLTASAGVAPLKFIAKVASDVDKPNGICVVPPNKLDS 172
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
L + K+ + GK+ E + ++ + L S+F K ++ GI
Sbjct: 173 FIEQLELGKISGV-GKVTLEKLHKFGFYKGQDIRECDHHTLLSNF-GKFGQVIWERCNGI 230
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D+ + KS+G + F +T + + Q+ I+ L ++ ERL+ + N Q
Sbjct: 231 DNRKIETNRTRKSVGVERTF--QTDIYSEQECIEAIEVLYPKLIERLQKSSSNNSIIKQG 288
Query: 361 LTVSF 365
L + F
Sbjct: 289 LKLKF 293
>gi|383120759|ref|ZP_09941482.1| DNA polymerase IV [Bacteroides sp. 1_1_6]
gi|382984922|gb|EES68284.2| DNA polymerase IV [Bacteroides sp. 1_1_6]
Length = 353
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 133/307 (43%), Gaps = 72/307 (23%)
Query: 11 MDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCP 70
MD FY VE + +P L GKPLAV + G + A +YEAR GV M +AK+ CP
Sbjct: 1 MDAFYASVEQRDHPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAMSSQKAKRLCP 58
Query: 71 EIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 130
++ V G+ D+ Y++ R+ I E + + TD++
Sbjct: 59 QLIF-----VSGRMDV--YKSVSRQ----------------IHEIFHEYTDIIE------ 89
Query: 131 GHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGV 190
P + DE + ++ TE+ + +++A
Sbjct: 90 -----------------PLSLDE--------------------AFLDVTENKKGISLAVD 112
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSMLYANLSIKK 249
I +EI+ + + SAG+++NK LAK+ KP +I P ++ + A L I+
Sbjct: 113 IAKEIKLRIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALDFI-AGLPIES 171
Query: 250 VRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARL 309
+G + + L L+L K SL+ L ++F K + Y +RGID PV A
Sbjct: 172 FWGVGPVTAKK-MHLLGIHNGLQLRKCSLEMLTAYF-GKVGALYYECSRGIDERPVEAVR 229
Query: 310 VSKSIGC 316
+ KSIGC
Sbjct: 230 IRKSIGC 236
>gi|398853147|ref|ZP_10609771.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM80]
gi|398241357|gb|EJN27010.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM80]
Length = 353
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 20/130 (15%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I ID DCFY +E + +P L GKPLAV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDDPRLAGKPLAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + YR A +E+ + S++++++E S+DE
Sbjct: 54 GVRSAMASGHALKLCPDLTIV-------KPRMDAYREASKEIHTIFSDYTDLIEPLSLDE 106
Query: 115 AYIDLTDVVH 124
AY+D++D H
Sbjct: 107 AYLDVSDSAH 116
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I ++IR V ++ SAG+A NK LAK+ KP ++ V + L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSGLPVSKL 183
Query: 251 RHLGGKLGDEVVE--TLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVN 306
+G D++ + + CS + E EK +L + F E+ L+ +ARGID V+
Sbjct: 184 HGVGKVTADKLGKHGIVDCSQLREWEKLALVREFGSFGER----LWSLARGIDDRLVH 237
>gi|89099009|ref|ZP_01171888.1| DNA polymerase IV [Bacillus sp. NRRL B-14911]
gi|89086139|gb|EAR65261.1| DNA polymerase IV [Bacillus sp. NRRL B-14911]
Length = 432
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE NP L GKPLA+ + G I+ +YEAR GV M
Sbjct: 9 GRVILHVDMNSFYASVEMAYNPELKGKPLAIAGNAEERRGIIVTCSYEARKFGVRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + P + +YR A + +L ++S +VE SIDE Y+D+TD
Sbjct: 69 WEAKKLCPQL-IVMTP------NFERYRAASMGMFNILGQYSGLVEPVSIDEGYVDITD 120
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 20/212 (9%)
Query: 148 PDNNDEDARKAGVMEWLGQVYSD------TDTSLMENTEDFQ---ELAIAGVIVEEIRAA 198
P+ A G+ LGQ YS D ++ T+ ++ L IAG I ++I
Sbjct: 83 PNFERYRAASMGMFNILGQ-YSGLVEPVSIDEGYVDITDSYEYGAPLEIAGSIQKQI--- 138
Query: 199 VLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLG 258
L + CS G+A NK LAK+ + KP ++L + + + + + +V H GK
Sbjct: 139 -LDQLDLPCSIGVAPNKFLAKMASDMKKPMGITVLRKRDIGNILWPMPV-EVMHGVGKKT 196
Query: 259 DEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVS--KSIGC 316
E + TLQ T+ L + + QL+ L A GID PV+ + KS+G
Sbjct: 197 AEKLRTLQIETIGSLAEANDLQLKGLL-GINGPRLKERANGIDRRPVDPESAAEFKSVGN 255
Query: 317 CKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
P ++ +Q++ + L+++V RL+
Sbjct: 256 STTLP--RDVSNQQELFKVLDMLSEKVAVRLK 285
>gi|240949969|ref|ZP_04754285.1| DNA polymerase IV [Actinobacillus minor NM305]
gi|240295569|gb|EER46295.1| DNA polymerase IV [Actinobacillus minor NM305]
Length = 357
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 127/315 (40%), Gaps = 73/315 (23%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R I IDMDCFY VE + NP+L GKP+AV K G + NYEAR G+ M
Sbjct: 5 TRKIIHIDMDCFYAAVEMRENPTLQGKPIAVGGSAD-KRGVLTTCNYEARKFGLHSAMAT 63
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+A + CP + L V ++ Y++ ++ + +++++E S+DEAY+D+TD
Sbjct: 64 AQALKRCPNLILLPV-------NMPLYKSVSEQIHQIFQRYTHLIEPLSLDEAYLDVTDC 116
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
+ AG W+ Q
Sbjct: 117 --------------------------------KKYAGSATWIAQA--------------- 129
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
IR + + + SAG+A K LAK+ +KP Q ++ V+
Sbjct: 130 ------------IRQDIWQELKLTASAGVAPLKFLAKIASDQNKPNGQFVITPEEVNSFI 177
Query: 243 ANLSIKKVRHLGGKLGDEVVET--LQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
L +KK+ +G +++++ QC + + K + Q F ++ L+ GI
Sbjct: 178 QTLPLKKIPGVGKVTHEKLIQMGFHQCQDIQKANKALIYQEFGKFGQR----LWDFCHGI 233
Query: 301 DHEPVNARLVSKSIG 315
D V KS+
Sbjct: 234 DPREVEVNRPRKSLA 248
>gi|74418670|gb|ABA03148.1| Dbh [Sulfurisphaera ohwakuensis]
Length = 351
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 123/303 (40%), Gaps = 69/303 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMRG 62
II +D D F+ QVE LNP GKPL V Y+ K G + NYEAR GV M
Sbjct: 2 IILFVDFDYFFAQVEEVLNPQYKGKPLIVCVYSGRNEKSGAVATANYEARKLGVKAGMPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A + P VP + Y +++++S +S+ +E ASIDEAYID+T
Sbjct: 62 SRAMELAPN--AIFVPMHK-----EVYTEVSNRIMSIISSYSDKIEIASIDEAYIDIT-- 112
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
S ++N E+
Sbjct: 113 ---------------------------------------------------SKVKNFEEA 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
EL ++++ ++ K + + GIA NKV AK++ KP ++ +
Sbjct: 122 IELG------KKLKREIMEKEKITVTVGIAPNKVFAKIIADRVKPNGLGVVKPDEIEEFI 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
++ I +V +G + E + +L + ++++ S +L+ E A +LY +A
Sbjct: 176 KSIDIDEVPGVGNVIS-ERLHSLGVNKLIDILSVSFDKLKEEIGEAKAFYLYRLATNSYF 234
Query: 303 EPV 305
EPV
Sbjct: 235 EPV 237
>gi|229061827|ref|ZP_04199159.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus AH603]
gi|228717481|gb|EEL69146.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus AH603]
Length = 412
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +P+L GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPTLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPFSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|387929642|ref|ZP_10132319.1| DNA polymerase IV [Bacillus methanolicus PB1]
gi|387586460|gb|EIJ78784.1| DNA polymerase IV [Bacillus methanolicus PB1]
Length = 427
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE +PSL GKPLA+ + G I+ +YEAR GV M
Sbjct: 9 GRVILHVDMNSFYASVEMAFDPSLKGKPLAIAGDVEERRGIIVTCSYEARKFGVKTAMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + K + +YR A + ++ ++S++VE SIDE Y+D+T+
Sbjct: 69 WEAKKLCPQLIVM-------KPNFERYRAASIRIFEIMRQYSDLVEPVSIDEGYMDITE 120
>gi|423081977|ref|ZP_17070572.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|423085581|ref|ZP_17074023.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
gi|357549227|gb|EHJ31074.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|357549498|gb|EHJ31344.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
Length = 366
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 166/387 (42%), Gaps = 87/387 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY +E + N L G+P+ +V N G + +YEAR G+ M
Sbjct: 6 RKIIHIDMDAFYASIEQRDNKKLKGRPV-IVGGNPQSRGVVATCSYEARKFGIHSAMPSA 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A CP VR + D+ Y++ ++ + ++++VE S+DEAY+D+T
Sbjct: 65 VAYNRCPYAVF-----VRPRFDV--YKSVSEQIRDIFYRYTDLVEPLSLDEAYLDVT--- 114
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ KSI D++ E A+ Q+ D F+
Sbjct: 115 -KNKKSI------------------DSSIEIAK---------QIKKDI----------FR 136
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
E+ + +A +S +F LAK+ L KP +++ + +
Sbjct: 137 EVGLTS-------SAGVSYNKF-----------LAKIASDLRKPNGLTVITEENAQDFLD 178
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L + K + GK+ ++ L T +L +L +L++ F +K LY ARGID
Sbjct: 179 KLPVNKFFGV-GKVTSNTLKNLGIKTGYDLRCLNLFELENIF-KKRGYELYKFARGIDDR 236
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVS-----HWIQELADEVCERLEDDLTLNKRRA 358
PV V KS+G +T L+ D+ + + EL +EVC RL+ +++
Sbjct: 237 PVEPNRVRKSVG------AETTLSHNLDIDEEETRNILDELCEEVCHRLKS----SEKFG 286
Query: 359 QLLTVSFTQETDGKVNSCSRSIALASY 385
+ LT+ E K+ +RSI+L Y
Sbjct: 287 KTLTLKIKYEDFTKI---TRSISLEHY 310
>gi|433774467|ref|YP_007304934.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Mesorhizobium australicum WSM2073]
gi|433666482|gb|AGB45558.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Mesorhizobium australicum WSM2073]
Length = 415
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 13/115 (11%)
Query: 10 DMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHC 69
D+D FY VE L+PSL GKP+AV GG ++A +YEAR GV M G +A++ C
Sbjct: 11 DLDAFYASVEQLLDPSLRGKPIAV------GGGVVLAASYEARAFGVRGGMPGRKARELC 64
Query: 70 PEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
P++ + S Y+ G I VL +F+ +VER SIDEA+ D+ H
Sbjct: 65 PQLIFV-------GGNFSHYQRLGDAAIKVLDDFTPVVERISIDEAFADVAGCTH 112
>gi|83316493|gb|ABC02422.1| DinB [Bacillus weihenstephanensis]
Length = 334
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLA+ + G II +YEAR G+ M
Sbjct: 12 GRVILHVDMNCFFASVEIAHDPSLQGKPLAIAGNEKERKGIIITCSYEAREYGIRTTMPL 71
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 72 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEQIQPFSIDEGYLDITDC 124
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 125 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 156
>gi|375090603|ref|ZP_09736917.1| hypothetical protein HMPREF9708_01307 [Facklamia languida CCUG
37842]
gi|374565364|gb|EHR36635.1| hypothetical protein HMPREF9708_01307 [Facklamia languida CCUG
37842]
Length = 372
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 150/358 (41%), Gaps = 74/358 (20%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I +DMD FY +E + +P +PL + ++ GG GI+A NY+AR G+
Sbjct: 15 TSRKILHVDMDAFYASIEMRDHPEWANQPLVIARHPHETGGRGIVATCNYKAREYGIHSA 74
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M +A Q CP ++ K +++ YR V E I +R Y DL
Sbjct: 75 MPALQAYQLCPH-------AIFVKGNMAYYRQ-------VSQEIHQIFKR------YTDL 114
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE Y D + ++
Sbjct: 115 IE--------------------------PLSLDE-------------AYLDVTQNKVKEP 135
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL-PQSSV 238
+ + ++I+ A+ +TQ S G+++NK +AK+ HKP +++ PQ S
Sbjct: 136 SALK-------LAQQIQTAIKQETQLTASVGVSYNKFIAKIASDFHKPNGITLVTPQESQ 188
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
+ L L +K +G K + E + +L + S + L +HF K LYY R
Sbjct: 189 AFL-LQLPLKDFHGVGKKTLAQ-FEAMGVRNGQDLYQLSYEDLVTHF-GKMGHSLYYKVR 245
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
G+ PV KSIG + F + L ++V + +Q L+ E+ RL+ L +R
Sbjct: 246 GVYSSPVKPYRDRKSIGVERTF--HSFLTQEEEVFNQLQALSGEIHRRLKAKDLLCQR 301
>gi|152979117|ref|YP_001344746.1| DNA polymerase IV [Actinobacillus succinogenes 130Z]
gi|150840840|gb|ABR74811.1| DNA-directed DNA polymerase [Actinobacillus succinogenes 130Z]
Length = 357
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 153/365 (41%), Gaps = 74/365 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMDCFY VE + PSL GKP+AV ++ + G + NYE R G M
Sbjct: 7 RKIIHIDMDCFYAAVEMREAPSLVGKPVAVGGHSRQR-GVLTTCNYEVRKFGCRSAMPTA 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A + CP++ + V ++ Y+ +++ + +++I+E S+DEAY+D+TD
Sbjct: 66 QAVKLCPDLIVLPV-------RMTLYKQVSQQIHQIFHRYTDIIEPLSLDEAYLDVTD-- 116
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ G W+ Q
Sbjct: 117 ------------------------------SGKCCGSATWIAQ----------------- 129
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
EIR A+ + SAGIA K LAK+ +KP Q ++ +V+
Sbjct: 130 ----------EIRQAIFDELHLTASAGIAPLKFLAKIASDQNKPNGQFVINPENVTEFVR 179
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L ++K+ +G + ++E + T +++ L L + F K ++ + GID
Sbjct: 180 TLPLRKIPGVGKVTSEHLLE-MGLYTCEDVQHAGLSVLLNRF-GKIGKRIWDFSHGIDER 237
Query: 304 PVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL---EDDLTLNKRRAQL 360
V KS+G +R + Q ++ ++EL E+ R+ + D++L++ R
Sbjct: 238 EVQPHRERKSVG-VERTLSQNIFTLEQGMAV-LEELCSELKRRILRAKPDISLSRYRKMG 295
Query: 361 LTVSF 365
+ + F
Sbjct: 296 VKLKF 300
>gi|383640097|ref|ZP_09952503.1| DNA-directed DNA polymerase [Sphingomonas elodea ATCC 31461]
Length = 361
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 113/434 (26%), Positives = 169/434 (38%), Gaps = 94/434 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + +PSL GKP+AV G + A +YEAR GV +
Sbjct: 7 RKILHIDMDAFYASVEQRDDPSLRGKPVAVGSAAA--RGVVAAASYEARAFGVRSALPSV 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A + CP++ VR + D+ Y+ + + A+ + D TD++
Sbjct: 65 TALRRCPDLIF-----VRPRFDV--YKAVSQAIHAI----------------FADYTDLI 101
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ TED +
Sbjct: 102 Q-----------------------PLSLDE--------------------AYLDVTEDRR 118
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSMLY 242
L A +EIRA +L++T SAGI++NK LAKL KP Q ++ P+ + +
Sbjct: 119 RLGTAWATAKEIRARILAETGLTASAGISYNKFLAKLASDHRKPNGQFAVTPEMGAAWV- 177
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L + + H G + + L T +L S+ L HF A W + I RG+D
Sbjct: 178 ETLPVSRF-HGVGPVTAAKMRRLGIETGADLRAKSMDFLARHFGSN-AEWYHQIVRGVDE 235
Query: 303 EPVNARLVSKSIGCCKRFPG---------KTCLATRQDVSHWIQELADEVCERLED---D 350
PVN KS G F L DV W CER +
Sbjct: 236 RPVNPNRERKSSGSETTFSRDLTDDAEIEAAVLGQADDVWEW--------CERTQGFGRT 287
Query: 351 LTLNKRRA--QLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPIS 408
T+ + A Q++T S +Q + +LA +L ++++ T S
Sbjct: 288 ATVKIKYADFQIITRSRSQPAPMTSREQLHAASLALLRLVLPTPKGIRLVGVTVSNFERP 347
Query: 409 DLTPPLLFLGLSAS 422
D TP LF G + S
Sbjct: 348 DATPLPLFGGAAPS 361
>gi|13471787|ref|NP_103354.1| DNA polymerase IV [Mesorhizobium loti MAFF303099]
gi|22095627|sp|Q98JM5.1|DPO42_RHILO RecName: Full=DNA polymerase IV 2; Short=Pol IV 2
gi|14022531|dbj|BAB49140.1| DNA damage inducible protein P [Mesorhizobium loti MAFF303099]
Length = 415
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 13/115 (11%)
Query: 10 DMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHC 69
D+D FY VE L+PSL GKP+AV GG ++A +YEAR GV M G +A++ C
Sbjct: 11 DLDAFYASVEQLLDPSLRGKPIAV------GGGVVLAASYEARAFGVRGGMPGRKARELC 64
Query: 70 PEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
P++ + S Y+ G I VL +F+ +VER SIDEA+ D+ H
Sbjct: 65 PQLIFV-------GGNFSHYQRLGDAAIKVLDDFTPVVERISIDEAFADVAGCTH 112
>gi|323488956|ref|ZP_08094193.1| DNA polymerase IV [Planococcus donghaensis MPA1U2]
gi|323397348|gb|EGA90157.1| DNA polymerase IV [Planococcus donghaensis MPA1U2]
Length = 430
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M SR+I IDM+ FY VE NP L GK +A+ + G I+ +YEAR G+ M
Sbjct: 20 MASRVIFHIDMNSFYASVEQSHNPELKGKAIAIAGNPKERKGIIVTCSYEARAHGIYTTM 79
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+ EAK+ PE+ L + +YR A + + +L ++++VE SIDE Y+D+T
Sbjct: 80 QVHEAKRKFPELLLL-------PPNFERYRAASKAMFEILRTYTDLVEPVSIDEGYVDVT 132
Query: 121 DVVHER 126
+++ R
Sbjct: 133 ELIETR 138
>gi|313145629|ref|ZP_07807822.1| DNA damage-inducible protein [Bacteroides fragilis 3_1_12]
gi|313134396|gb|EFR51756.1| DNA damage-inducible protein [Bacteroides fragilis 3_1_12]
Length = 364
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 135/319 (42%), Gaps = 76/319 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD FY VE + +P L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MGERKIIHIDMDAFYASVEQRDHPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP +L VP G+ DI Y++ R V + E+++++E S+DEA++D+T
Sbjct: 59 SSQKAKRLCP--QLIFVP---GRMDI--YKSVSRRVHEIFHEYTDLIEPLSLDEAFLDVT 111
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT- 179
+ K G++ + D ++ +
Sbjct: 112 E----------------------------------NKQGIL-----LAVDIARAIKQRIR 132
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
E+ +A AGV + A + S F G+ C +H Q + + +
Sbjct: 133 EELNLVASAGVSYNKFLAKIAS--DFRKPDGL----------CTIHPDQALDFIARLPIE 180
Query: 240 MLY--ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+ ++ +K+ LG G ++ CS+ + + +F K Y A
Sbjct: 181 SFWGVGPVTARKMHLLGIHNG---LQLRGCSSEMLVRQFG----------KVGLLYYDFA 227
Query: 298 RGIDHEPVNARLVSKSIGC 316
RGID PV A + KSIGC
Sbjct: 228 RGIDLRPVEAVWIRKSIGC 246
>gi|366988779|ref|XP_003674157.1| hypothetical protein NCAS_0A12180 [Naumovozyma castellii CBS 4309]
gi|342300020|emb|CCC67776.1| hypothetical protein NCAS_0A12180 [Naumovozyma castellii CBS 4309]
Length = 636
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 95/414 (22%), Positives = 171/414 (41%), Gaps = 88/414 (21%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
+A ID++ F+ QVE P+ VQ+N+ IIAV+Y AR G++R A
Sbjct: 26 LAHIDVNAFFAQVEQIRCGYTKDDPVVCVQWNS-----IIAVSYAARKYGISRMDTIQSA 80
Query: 66 KQHC------------------------------PEIELCRVPSVRGKADISKYRNAGRE 95
+ C PE +L P + K + YR R+
Sbjct: 81 MKKCENLIPIHTALFRKGESWWTYYDGCGSWMKDPEKQL---PPNKFKVALDPYRRESRK 137
Query: 96 VIAVLSEFSNIVERASIDEAYIDLTDVV--------HERMKSIGHIAASQLSNTFVVGFG 147
++ + E ++VE+AS+DE ++DL + +E +S + L F+ G
Sbjct: 138 ILKIFKEHCDLVEKASVDEVFLDLGRLCFQDLMFGENEEFESCDQL--KMLRKMFIEG-- 193
Query: 148 PDNNDEDARKAGV------MEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 201
+ D +R V +E++G V++ + L+E+ +D L +A + +R +
Sbjct: 194 --DYDLKSRLPVVPDDLKKLEFVGNVFNSENRCLIEDWDDIIFL-LASRRTQAVRDVIFK 250
Query: 202 KTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY--ANLSIKKVRHLGGKLGD 259
+ S GI+ K + KL KP Q+ + + + I +GGKLG
Sbjct: 251 NLGYTTSCGISRTKNVCKLGSNFKKPNAQTTIKNNCLEDFLDSGKFEITSFWTMGGKLGQ 310
Query: 260 EVVETLQC--------------STMLELEKF---SLKQLQSHFE---------EKTASWL 293
++ E L ++ ++LE F +K+L+ + ++ ++ +
Sbjct: 311 DISEILNVPSEGSLKYIRESWPNSAVDLEHFIEQKVKELEKNGSTTRIDMSKVDELSTKI 370
Query: 294 YYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
Y +ARGI P+N R V KS+ K C + D W++ + E+ R+
Sbjct: 371 YKLARGIYCVPLNPRPVVKSMMSNKNMRKDGC-TSLIDCIDWLEVFSAELIARI 423
>gi|326668001|ref|XP_691219.4| PREDICTED: DNA polymerase kappa [Danio rerio]
Length = 902
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 160/368 (43%), Gaps = 31/368 (8%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I +DMD FY VE + P L KP+AV + + NY AR GV M G
Sbjct: 114 RVIVHVDMDAFYAAVEMRDCPELKDKPMAVGSMSM-----LSTSNYHARRFGVRAAMPGF 168
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
AK+ CP++ + VP+ + KYR +V + SE+ S+DEAY+D+T+ +
Sbjct: 169 IAKKLCPDLVI--VPT-----NFDKYRAVSAQVREIFSEYDPNFMPMSLDEAYLDITEHL 221
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+R + ++ + + E R E ++ D+ +S +
Sbjct: 222 EQRKHWPDTMRTHKICDAKTESDACRSTSESERD----ELSPVLFEDSPSSSPSLSGADG 277
Query: 184 ELAIAGV----IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSV 238
+ + G V E+R + KT SAGIA N +LAK+ +KP Q I P+ V
Sbjct: 278 KAEVFGTSAEEAVREMRFRIEQKTSLTASAGIAPNMMLAKVCSDKNKPNGQYRIPPERQV 337
Query: 239 SM-LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
M +L ++KV + GK+ ++++ L T +L + + L F E + +I+
Sbjct: 338 VMDFMKDLPVRKVSGV-GKVTEKMLAALGIVTCSQLGQ-QMALLSLLFSETSWHHFLHIS 395
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRR 357
G+ + KS+ + F G+ A Q L E+C L DL +
Sbjct: 396 LGLGSTYMERDSERKSMSTERTF-GEMSDAGEQ------YSLCKELCHDLAQDLQREGLK 448
Query: 358 AQLLTVSF 365
+ +T+
Sbjct: 449 GKTVTLKL 456
>gi|311747596|ref|ZP_07721381.1| DNA polymerase IV [Algoriphagus sp. PR1]
gi|126575578|gb|EAZ79888.1| DNA polymerase IV [Algoriphagus sp. PR1]
Length = 365
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 147/348 (42%), Gaps = 74/348 (21%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
T R I +DMD FY VE +P GKPL V + G + A +YEAR GV M
Sbjct: 8 TVRKIIHVDMDAFYASVEQMDHPEWRGKPLVVG--GSRARGVVAAASYEARKYGVYSAMA 65
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A + CP + + K +YR E S + I E + + TD
Sbjct: 66 SSIAVRKCPHL-------IFAKPRFDRYR-----------ELSLM-----IREVFYEYTD 102
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V P + DE + ++ TE+
Sbjct: 103 LVE-----------------------PLSLDE--------------------AFLDVTEN 119
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSM 240
+ + A +I +IR + KT + SAG+++NK LAK+ L+KP Q+ ILP+ +
Sbjct: 120 KKGINSAILIARQIRQKIKEKTNLNASAGVSYNKFLAKIASDLNKPNGQAYILPEDAEEF 179
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
L L I K + GK+ E ++ + +L++FSL+ L F K+ + I RGI
Sbjct: 180 L-EKLPIGKFFGI-GKVTAEKMQKIGIHNGADLKQFSLQFLSKKF-GKSGLHYFNIVRGI 236
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
V V KS+ F + L T +++ + +Q + +EV RL+
Sbjct: 237 HLSEVQPHRVRKSLSAENTF--EVDLTTDEELLNKLQPIYEEVIRRLD 282
>gi|205373932|ref|ZP_03226733.1| DNA polymerase IV [Bacillus coahuilensis m4-4]
Length = 400
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
R+I +DM+ FY VE NP L GKP+AV + G II +YEAR G+ M
Sbjct: 8 AGRVILHVDMNSFYASVEMAYNPELKGKPIAVAGNPDERKGIIITCSYEARKYGIKTTMP 67
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP + V G + +YR+A + + +L F+++VE SIDE Y+D+TD
Sbjct: 68 LWEAKKLCPHL------MVMG-PNFDRYRDASKGMFDILRSFTHLVEPVSIDEGYMDITD 120
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 19/186 (10%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D M+ T+ F EL I E I+ +L + CS GIA NK LAK + KP +
Sbjct: 112 DEGYMDITDCF-ELGTPIFIAETIQNRILQQLDLPCSIGIAPNKFLAKTASDMKKPLGIT 170
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQS----HF 285
IL + VS + + + +G K +++ + + +FSLK L
Sbjct: 171 ILRKREVSSILWPKDVLSMHGVGSKTAEKLNNIHIYTIGDLANANEFSLKTLLGINGPRL 230
Query: 286 EEKTASWLYYIARGIDHEPV--NARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEV 343
+E+ A GID PV ++ V K+IG + P + ++ + ++ L+D+V
Sbjct: 231 KER--------ANGIDERPVDPDSIYVYKTIGNSRTLPRD--VTNQRQLLEVLEGLSDKV 280
Query: 344 CERLED 349
RL++
Sbjct: 281 ATRLKN 286
>gi|302346217|ref|YP_003814515.1| DNA polymerase IV [Prevotella melaninogenica ATCC 25845]
gi|302150325|gb|ADK96586.1| DNA polymerase IV [Prevotella melaninogenica ATCC 25845]
Length = 366
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 135/320 (42%), Gaps = 76/320 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKG--GGIIAVNYEARHKGVTRHMR 61
R I IDMD F+ VE + NP L GKP+AV + G G + +YEAR GV M
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPELKGKPIAV----GFDGPRGVVSTASYEARPFGVHSAMS 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ + + +Y+ R++ AV E Y DL +
Sbjct: 58 MAQAKRRCPQLIVV-------SSHFDRYKEVSRQIHAVFHE-------------YTDLVE 97
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+ D + ++ +E+
Sbjct: 98 PI----------------------------------------------SLDEAFLDVSEN 111
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSM 240
+ + +A I +EI+ + +T SAGI++NK+LAK+ + KP ++ P ++
Sbjct: 112 KKGIELAVDIAKEIKQKIFERTSLTASAGISYNKLLAKIASDMRKPNGIFTVHPDRALDF 171
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ L I+K+ +G K E + ++ T +L + S + L F K + Y +RGI
Sbjct: 172 I-GKLPIEKLWGVGPKTA-ERMHSMGVFTGEQLREISREHLVQVF-GKMGNVYYDFSRGI 228
Query: 301 DHEPVNARLVSKSIGCCKRF 320
D+ PV KS+GC + F
Sbjct: 229 DNRPVIVAYERKSVGCERTF 248
>gi|359300293|ref|ZP_09186132.1| DNA polymerase IV [Haemophilus [parainfluenzae] CCUG 13788]
gi|402306619|ref|ZP_10825660.1| DNA polymerase IV [Haemophilus sputorum HK 2154]
gi|400374574|gb|EJP27491.1| DNA polymerase IV [Haemophilus sputorum HK 2154]
Length = 360
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 131/312 (41%), Gaps = 69/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMDCFY +E + +PSL GKP+AV + ++ G + NYEAR G+ M
Sbjct: 9 RKIIHIDMDCFYAAIEMRDDPSLVGKPVAVGS-DVYQHGVLTTCNYEARKFGLHSAMPTA 67
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A + CP + L V +++ Y++ ++ + +++I+E S+DEA++D+TD
Sbjct: 68 QALKRCPNLILRPV-------NMAYYKSVSAQIHQIFRHYTDIIEPLSLDEAFLDVTDSA 120
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
H +G W+ +
Sbjct: 121 H--------------------------------CSGSATWIAE----------------- 131
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
AI I +E+ Q SAG+A K LAK+ +KP ++P V+
Sbjct: 132 --AIRQAIAQEL--------QLTASAGVAPLKFLAKIASDQNKPNGIFVIPPEKVADFIH 181
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L +KK+ + GK+ E + L T ++++ + F K L+ + GID+
Sbjct: 182 QLPLKKIPGV-GKVTQEKLTQLGLQTCADIQQSDQALIYKTF-GKFGQRLWAFSHGIDNR 239
Query: 304 PVNARLVSKSIG 315
+ KS+
Sbjct: 240 SIEPNRPRKSVA 251
>gi|126652133|ref|ZP_01724315.1| DNA polymerase IV [Bacillus sp. B14905]
gi|126591041|gb|EAZ85152.1| DNA polymerase IV [Bacillus sp. B14905]
Length = 411
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII ID++CFY VE +PSL GKP+A+ + G +I +YEAR GV M
Sbjct: 4 GRIILHIDLNCFYASVEQIYDPSLKGKPIAIAGNPKERRGIVITCSYEARKSGVYTTMNV 63
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
EA++ CP EL +P + +YR A + +L E+S I++ SIDE YI L
Sbjct: 64 GEARRKCP--ELIVLP-----PNFERYRAASKSFFGLLKEYSEILQPVSIDEGYIQL 113
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 18/253 (7%)
Query: 192 VEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVR 251
V I+ + ++ Q CS GIA NK LAK+ + KP +IL + V + L++K++
Sbjct: 125 VHGIQGRIWNELQLPCSIGIAPNKFLAKMASEMRKPMGITILRKRDVPSVLWPLNVKEM- 183
Query: 252 HLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLV- 310
H GK E ++ L T+ EL L+ F L A G D PV+ +
Sbjct: 184 HGIGKSTAEKLKELGIQTIGELAAADEYTLKQKFGINGLR-LKQKANGEDDRPVDPEAIY 242
Query: 311 -SKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQET 369
+KS+G T R ++ + L+++V ERL+ K+ A + +
Sbjct: 243 DTKSVGNSTTLSHDT--TDRDELYKIMTTLSEKVAERLK-----AKKLAGVTVSIIIRTA 295
Query: 370 DGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPLGS 429
+ + S+S+ A + +DIVE + + NK + P+ LG++ S S +
Sbjct: 296 SWETYTRSKSVNNAIFSKEDIVEQAWNLFNKNWNEEPVR-------LLGVTISNVSDIKE 348
Query: 430 HPSIQQFFKPQDH 442
FF +DH
Sbjct: 349 MTQQLTFFDFEDH 361
>gi|363548406|sp|Q974T8.2|DPO4_SULTO RecName: Full=DNA polymerase IV; Short=Pol IV
gi|342306245|dbj|BAK54334.1| DNA polymerase IV [Sulfolobus tokodaii str. 7]
Length = 351
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 123/303 (40%), Gaps = 69/303 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMRG 62
II +D D F+ QVE LNP GKPL V Y+ K G + NYEAR GV M
Sbjct: 2 IILFVDFDYFFAQVEEVLNPQYKGKPLIVCVYSGRNEKSGAVATANYEARKLGVKAGMPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A + P VP + Y +++++S +S+ +E ASIDEAYID+T
Sbjct: 62 SRAMELAPN--AIFVPMHK-----EVYTEVSNRIMSIISSYSDKIEIASIDEAYIDIT-- 112
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
S ++N E+
Sbjct: 113 ---------------------------------------------------SKVKNFEEA 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
EL ++++ ++ K + + GIA NKV AK++ KP ++ +
Sbjct: 122 IELG------KKLKREIMEKEKITVTVGIAPNKVFAKIIADRVKPNGLGVVKPEEIEEFI 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
++ I +V +G + E + +L + ++++ S +L+ E A +LY +A
Sbjct: 176 KSIDIDEVPGVGNVI-SERLHSLGVNKLIDILSVSFDKLKEEIGEAKAFYLYRLATNSYF 234
Query: 303 EPV 305
EPV
Sbjct: 235 EPV 237
>gi|403238203|ref|ZP_10916789.1| DNA polymerase IV [Bacillus sp. 10403023]
Length = 417
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE +P+L GKPLA+ + G I+ +YEAR GV M
Sbjct: 9 GRVILHVDMNSFYASVEMAYDPALQGKPLAIAGNVEERKGIIVTCSYEARAFGVKTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP + + R P + +YR+A + +L ++++VE SIDE Y+D+TD
Sbjct: 69 WEAKRKCPNL-IVRKP------NFERYRSASLAMFDILRSYTDLVEPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E +SI + +L +G P+
Sbjct: 122 YEKGSPIEIARSIQETVSKKLLLPCSIGIAPN 153
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I I+ V K CS GIA NK LAK+ + KP ++L + V + + + ++
Sbjct: 130 IARSIQETVSKKLLLPCSIGIAPNKFLAKMGSDMKKPLGITVLRKRDVPTILWPMPVGEM 189
Query: 251 RHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLV 310
+G + +++ T+ T+ +L K + QL+S + A GID+ PV+ +
Sbjct: 190 HGVGSRTAEKLA-TINIHTIGDLAKGNDVQLKSLL-GINGERIKQRANGIDNRPVDPDAI 247
Query: 311 S--KSIGCCKRFP 321
S KSIG P
Sbjct: 248 SEFKSIGNSTTLP 260
>gi|345019721|ref|ZP_08783334.1| DNA polymerase IV [Ornithinibacillus scapharcae TW25]
Length = 411
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+RII +DM+ FY VE + + GKPLAV + G II NYEAR KGV M
Sbjct: 6 ARIIFHLDMNSFYASVETAYHTAWKGKPLAVAGNPEERRGIIITSNYEARAKGVKTTMPV 65
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CPE+ + R + +YR A RE+ ++ + VE SIDE Y+D+TD
Sbjct: 66 WQAKKLCPELIVVR-------PNFERYRLASREIFKLMYAITPFVEPVSIDEGYMDVTD 117
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 19/226 (8%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
+ E ++ + + CS GIA NK LAK+ + KP +IL + + L + ++
Sbjct: 127 LAENLQQKIKRELDLPCSIGIAPNKFLAKMASDMKKPMGITILRKRDIPEKLWPLPVGEM 186
Query: 251 RHLGGKLGDEVVETLQCSTMLEL---EKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNA 307
+G K E ++T+ T+ +L + + LKQL E+ L A GID PV+
Sbjct: 187 YGVGKKTA-EKLQTIDIQTIGDLAAGDVYRLKQLLGINGER----LKNRANGIDLRPVDP 241
Query: 308 RLVS--KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSF 365
V+ KSIG + P T ++ Q LA+ V ++ + ++ A TV
Sbjct: 242 DAVNEFKSIGSSETLPMDTT--DELEIKALFQALAENV------EIRMKRKNAAARTVQI 293
Query: 366 T-QETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
T + D K + S+ + + DI++V+M++ + + P+ L
Sbjct: 294 TVRYYDRKTITRSKKLPNFIERKVDILKVAMELFDSHWNREPVRLL 339
>gi|323341493|ref|ZP_08081734.1| DNA-directed DNA polymerase IV [Lactobacillus ruminis ATCC 25644]
gi|417974490|ref|ZP_12615308.1| DNA polymerase IV [Lactobacillus ruminis ATCC 25644]
gi|323091104|gb|EFZ33735.1| DNA-directed DNA polymerase IV [Lactobacillus ruminis ATCC 25644]
gi|346329151|gb|EGX97452.1| DNA polymerase IV [Lactobacillus ruminis ATCC 25644]
Length = 366
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 155/395 (39%), Gaps = 81/395 (20%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIA-VNYEARHKGVTRHM 60
+R I +DMDCFY +E + N L GKP+ + + GG G+++ NY AR GV M
Sbjct: 2 ARKIIHVDMDCFYASIEVRDNQKLAGKPVVIARDPRHSGGKGVVSTANYVARSFGVHSAM 61
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+EA CP+ VP D KYR +E+
Sbjct: 62 NANEALNLCPDAVF--VPP-----DFKKYRRVSKEI-----------------------H 91
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
++ HE I IA D + ++ TE
Sbjct: 92 EIFHEYTDKIEPIA------------------------------------FDEAYLDVTE 115
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
L A +I I+ + KT CS GI++NK LAKL KP +++ +
Sbjct: 116 CKLGLKSATIIAHRIQQEIFEKTGLTCSTGISYNKFLAKLASDYAKPVGMTLVREDEALD 175
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS-HFEEKTASWLYYIARG 299
L I+K R +G K V++ + + + L +L H+ K + Y RG
Sbjct: 176 FLLPLKIEKFRGVGRK---TVIKMHELGVYNGYDLYGLSELDLIHYFGKMGHFFYEQVRG 232
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
ID V + KS G + F L + +++ ++ A ++L +DLT ++ +
Sbjct: 233 IDDREVEWQRERKSFGVERTF--NMPLVSNEEIDEQLKWTA----QKLANDLTRAQKHGK 286
Query: 360 LLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVS 394
L V + + + + ++ + LA Y D ++
Sbjct: 287 TLVV---KVRNSEFETKTKRLTLADYFQNDATTIA 318
>gi|398866433|ref|ZP_10621927.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM78]
gi|398240663|gb|EJN26332.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM78]
Length = 353
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 20/130 (15%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I +D DCFY +E + +P L GKPLAV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHVDCDCFYAAIEMRDDPRLAGKPLAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + YR A RE+ + +++ I+E S+DE
Sbjct: 54 GVRSAMSSGHALKLCPDLTIV-------KPRMDAYREASREIHTIFRDYTEIIEPLSLDE 106
Query: 115 AYIDLTDVVH 124
AY+D++D H
Sbjct: 107 AYLDVSDSAH 116
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I ++IR V ++ SAG+A NK LAK+ KP ++ V + L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEAFVSGLPVSKL 183
Query: 251 RHLG-------GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+G GKLG CS + E +K +L + F E+ L+ +ARGID
Sbjct: 184 HGVGKVTAERLGKLG-----ITDCSQLREWDKLALVREFGSFGER----LWSLARGIDDR 234
Query: 304 PVN 306
V+
Sbjct: 235 LVH 237
>gi|398873489|ref|ZP_10628745.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM74]
gi|398199330|gb|EJM86273.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM74]
Length = 353
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 20/130 (15%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I +D DCFY +E + +P L GKPLAV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHVDCDCFYAAIEMRDDPRLAGKPLAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + YR A RE+ + +++ I+E S+DE
Sbjct: 54 GVRSAMSSGHALKLCPDLTIV-------KPRMDAYREASREIHTIFRDYTEIIEPLSLDE 106
Query: 115 AYIDLTDVVH 124
AY+D++D H
Sbjct: 107 AYLDVSDSAH 116
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I ++IR V ++ SAG+A NK LAK+ KP ++ V + L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSGLPVSKL 183
Query: 251 RHLG-------GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+G GKLG C + E +K +L + F E+ L+ +ARGID
Sbjct: 184 HGVGKVTADKLGKLG-----ITDCLQLREWDKLALVREFGSFGER----LWSLARGIDER 234
Query: 304 PVN 306
V+
Sbjct: 235 AVH 237
>gi|337267791|ref|YP_004611846.1| DNA-directed DNA polymerase [Mesorhizobium opportunistum WSM2075]
gi|336028101|gb|AEH87752.1| DNA-directed DNA polymerase [Mesorhizobium opportunistum WSM2075]
Length = 415
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 13/115 (11%)
Query: 10 DMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHC 69
D+D FY VE L+PSL GKP+AV GG ++A +YEAR GV M G +A++ C
Sbjct: 11 DLDAFYASVEQLLDPSLRGKPIAV------GGGVVLAASYEARAFGVRGGMPGRKARELC 64
Query: 70 PEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
P++ + S Y+ G I VL +F+ +VER SIDEA+ D+ H
Sbjct: 65 PQLIFV-------GGNFSHYQRLGDAAIKVLDDFTPLVERISIDEAFADVAGCTH 112
>gi|423279718|ref|ZP_17258631.1| DNA polymerase IV [Bacteroides fragilis HMW 610]
gi|424662220|ref|ZP_18099257.1| DNA polymerase IV [Bacteroides fragilis HMW 616]
gi|404578009|gb|EKA82745.1| DNA polymerase IV [Bacteroides fragilis HMW 616]
gi|404584706|gb|EKA89350.1| DNA polymerase IV [Bacteroides fragilis HMW 610]
Length = 364
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 136/320 (42%), Gaps = 78/320 (24%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD FY VE + +P L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MGERKIIHIDMDAFYASVEQRDHPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP +L VP G+ DI Y++ R V + E+++++E S+DEA++D+T
Sbjct: 59 SSQKAKRLCP--QLIFVP---GRMDI--YKSVSRRVHEIFHEYTDLIEPLSLDEAFLDVT 111
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT- 179
+ K G++ + D ++ +
Sbjct: 112 E----------------------------------NKQGIL-----LAVDIARAIKQRIR 132
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
E+ +A AGV + A + S F G+ C +H Q + + +
Sbjct: 133 EELNLVASAGVSYNKFLAKIAS--DFRKPDGL----------CTIHPDQALDFIARLPIE 180
Query: 240 MLY--ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-I 296
+ ++ +K+ LG G ++ CS+ + + +F LYY
Sbjct: 181 SFWGVGPVTARKMHLLGIHNG---LQLRGCSSEMLVRQFG-----------KVGLLYYDF 226
Query: 297 ARGIDHEPVNARLVSKSIGC 316
ARG+D PV A + KSIGC
Sbjct: 227 ARGVDLRPVEAVWIRKSIGC 246
>gi|110636134|ref|YP_676342.1| DNA polymerase IV [Chelativorans sp. BNC1]
gi|110287118|gb|ABG65177.1| UMUC-like DNA-repair protein [Chelativorans sp. BNC1]
Length = 428
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 13/115 (11%)
Query: 10 DMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHC 69
D+D FY VE LNP+L GKP+AV GG ++A +YEA+ GV M G +A++ C
Sbjct: 12 DLDAFYASVEQLLNPALRGKPIAV------GGGVVLAASYEAKAFGVRGGMAGRKARELC 65
Query: 70 PEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
P++ Y+ G IA++ +F+ +VER SIDEA+ D+T H
Sbjct: 66 PQLVFV-------GGHFEDYQRLGDAAIAIIGDFTPLVERISIDEAFADVTGCTH 113
>gi|407797335|ref|ZP_11144279.1| DNA polymerase IV [Salimicrobium sp. MJ3]
gi|407018298|gb|EKE31026.1| DNA polymerase IV [Salimicrobium sp. MJ3]
Length = 409
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I IDM+ FY VE P L GKPLA+ + G I+ +YEAR GV M
Sbjct: 9 RVILHIDMNSFYASVEMADYPELQGKPLAIAGNPEERKGVIVTSSYEARKYGVKTTMLVG 68
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EA++ CP + L R P + +YR +++ A+L E + +V+ SIDE Y+D++D+
Sbjct: 69 EARRLCPSL-LIRRP------NFDRYREVSKQLFAILREVTELVQPVSIDEGYMDISDL 120
Score = 40.4 bits (93), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
+ EE++ + + + CS GIA NK LAK+ + KP +IL + + L + +
Sbjct: 128 LAEELQKRIFADLKVPCSIGIAPNKFLAKMASDMKKPMGCTILRKRDIPKKLWPLPVLDM 187
Query: 251 RHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308
+G K +++ ++ + +++ LK L S L+ A G D V+
Sbjct: 188 HGVGEKTAEKLKKIDVHTIGDLANRKEYELKNLLG----VNGSKLHQRANGFDDREVDPE 243
Query: 309 LVS--KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
+ KSIG T T +V ++LA++V R++
Sbjct: 244 AIHSFKSIGTSTTLAEDTSEET--EVYRTFRKLAEKVEGRMK 283
>gi|429770091|ref|ZP_19302173.1| putative DNA polymerase IV [Brevundimonas diminuta 470-4]
gi|429185547|gb|EKY26522.1| putative DNA polymerase IV [Brevundimonas diminuta 470-4]
Length = 359
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 116/255 (45%), Gaps = 19/255 (7%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D + ++ T + + L A EEIR +L T SAGI++NK LAKL KP Q
Sbjct: 107 DEAYLDVTANRRGLPTASATAEEIRDRILEATGLTASAGISYNKFLAKLASDQRKPNGQF 166
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
++P +L +K+ H G + E + L T +L SL LQ HF K+
Sbjct: 167 VVPPGRGEAFVQDLPVKRF-HGVGPVTAEKMTRLGIETGADLRHQSLAFLQHHF-GKSGP 224
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEV---CER-- 346
W Y IARG DH PVN KS G F L + + ++E+ADEV CE+
Sbjct: 225 WYYAIARGEDHRPVNPDRERKSSGSETTF--ARDLVEPEAIEAGVEEMADEVWAWCEKAG 282
Query: 347 -LEDDLTLNKRRAQL----LTVSFTQ--ETDGKVNSCSRSIALASY---KLQDIVEVSMQ 396
L +T+ + A + SF + + ++ SR +A + Y K +V V++
Sbjct: 283 SLGRTVTVKVKWADFQQSTRSRSFAEPVASKARLREISRLLARSLYPPTKGVRLVGVTIS 342
Query: 397 VINKTNSAPPISDLT 411
+ K + P +L
Sbjct: 343 NLEKATAQPAAGELA 357
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD F+ VE + +P+L G+P+AV + G + A +YEAR GV M
Sbjct: 7 RKIIHVDMDAFFASVEQRDDPALRGRPVAVGHAAS--RGVVAAASYEARKFGVRSAMPSS 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ YR ++ AV +++++++E S+DEAY+D+T
Sbjct: 65 TALRRCPQLIFT-------PPRFEIYRAVSAQIHAVFADYTDLIEPLSLDEAYLDVT 114
>gi|398956322|ref|ZP_10676836.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM33]
gi|398150049|gb|EJM38671.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM33]
Length = 353
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 20/130 (15%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I +D DCFY +E + +P L GKPLAV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHVDCDCFYAAIEMRDDPRLAGKPLAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + YR A RE+ + +++ I+E S+DE
Sbjct: 54 GVRSAMSSGHALKLCPDLTIV-------KPRMDAYREASREIHTIFRDYTEIIEPLSLDE 106
Query: 115 AYIDLTDVVH 124
AY+D++D H
Sbjct: 107 AYLDVSDSAH 116
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I ++IR V ++ SAG+A NK LAK+ KP ++ V + L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSGLPVSKL 183
Query: 251 RHLG-------GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+G GKLG C + E +K +L + F E+ L+ +ARGID
Sbjct: 184 HGVGKVTADKLGKLG-----ITDCLQLREWDKLALVREFGSFGER----LWSLARGIDER 234
Query: 304 PVN 306
V+
Sbjct: 235 VVH 237
>gi|15920791|ref|NP_376460.1| DNA polymerase IV [Sulfolobus tokodaii str. 7]
Length = 353
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 123/303 (40%), Gaps = 69/303 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMRG 62
II +D D F+ QVE LNP GKPL V Y+ K G + NYEAR GV M
Sbjct: 4 IILFVDFDYFFAQVEEVLNPQYKGKPLIVCVYSGRNEKSGAVATANYEARKLGVKAGMPI 63
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A + P VP + Y +++++S +S+ +E ASIDEAYID+T
Sbjct: 64 SRAMELAPN--AIFVPMHK-----EVYTEVSNRIMSIISSYSDKIEIASIDEAYIDIT-- 114
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
S ++N E+
Sbjct: 115 ---------------------------------------------------SKVKNFEEA 123
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
EL ++++ ++ K + + GIA NKV AK++ KP ++ +
Sbjct: 124 IELG------KKLKREIMEKEKITVTVGIAPNKVFAKIIADRVKPNGLGVVKPEEIEEFI 177
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
++ I +V +G + E + +L + ++++ S +L+ E A +LY +A
Sbjct: 178 KSIDIDEVPGVGNVI-SERLHSLGVNKLIDILSVSFDKLKEEIGEAKAFYLYRLATNSYF 236
Query: 303 EPV 305
EPV
Sbjct: 237 EPV 239
>gi|53712423|ref|YP_098415.1| DNA damage-inducible protein [Bacteroides fragilis YCH46]
gi|265762607|ref|ZP_06091175.1| DNA damage-inducible protein [Bacteroides sp. 2_1_16]
gi|81608625|sp|Q64X95.1|DPO4_BACFR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|52215288|dbj|BAD47881.1| DNA damage-inducible protein [Bacteroides fragilis YCH46]
gi|263255215|gb|EEZ26561.1| DNA damage-inducible protein [Bacteroides sp. 2_1_16]
Length = 364
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 151/352 (42%), Gaps = 80/352 (22%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD FY VE + +P L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MNERKIIHIDMDAFYASVEQRDHPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP +L VP G+ ++ Y++ R+V + E+++++E S+DEA++D+T
Sbjct: 59 SSQKAKRLCP--QLIFVP---GRMEV--YKSVSRQVHEIFHEYTDLIEPLSLDEAFLDVT 111
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT- 179
+ K G++ + D ++ +
Sbjct: 112 E----------------------------------NKQGIL-----LAVDIAKAIKQRIR 132
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
E+ +A AGV + A + S F G+ C +H Q + + +
Sbjct: 133 EELSLVASAGVSYNKFLAKIAS--DFRKPDGL----------CTIHPDQAIDFIARLPIE 180
Query: 240 MLY--ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-I 296
+ ++ +K+ LG G ++ E CS+ + + +F LYY
Sbjct: 181 SFWGVGPVTARKMHLLGIHNGLQLRE---CSSEMLVRQFG-----------KVGLLYYDF 226
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
ARG+D PV A + KSIGC + + R V + +A E+ ERL+
Sbjct: 227 ARGVDLRPVEAVRIRKSIGCEHTL--EKDIHVRSSVIIELYHVATELVERLQ 276
>gi|319788065|ref|YP_004147540.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
gi|317466577|gb|ADV28309.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
Length = 364
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 144/372 (38%), Gaps = 79/372 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + PSL G+P+ V W+G + A +YEAR GV M
Sbjct: 10 RKIIHVDMDAFYASVEQRDAPSLRGRPVVV----AWRGARSVVCAASYEARKFGVRSAMP 65
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D +Y+ R+ + E ++ TD
Sbjct: 66 ALRAERLCPDAVF--VPP-----DFVRYKAVSRQ----------------VREIMLEHTD 102
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V P + DE Y D T
Sbjct: 103 LVE-----------------------PLSLDE-------------AYLDVTTPR------ 120
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
L A + E IRA + ++T SAG+A NK LAK+ +KP ++ V
Sbjct: 121 -TGLPSATAVAEAIRAKIRAETGLTASAGVAPNKFLAKIASDWNKPDGLFVIRPQHVERF 179
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L ++++ +G + ++ E L +T+ EL L++LQ F A+ LY ARGID
Sbjct: 180 LTPLPVERIPGVGKVMQGKLAE-LGIATVGELRSRPLEELQQRFGSFGAA-LYRRARGID 237
Query: 302 HEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDD-----LTLNKR 356
PV +S+ F G L + + E R D L L
Sbjct: 238 ERPVEPDQPVRSVSSEDTFAGDLPLEALEPAIRQLAEKTWNASRRAGRDGHTVVLKLKTA 297
Query: 357 RAQLLTVSFTQE 368
+ ++LT S T E
Sbjct: 298 QFRILTRSLTLE 309
>gi|426408057|ref|YP_007028156.1| DNA polymerase IV [Pseudomonas sp. UW4]
gi|426266274|gb|AFY18351.1| DNA polymerase IV [Pseudomonas sp. UW4]
Length = 353
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 20/130 (15%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I +D DCFY +E + +P L GKPLAV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHVDCDCFYAAIEMRDDPRLAGKPLAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + YR A RE+ + +++ I+E S+DE
Sbjct: 54 GVRSAMSSGHALKLCPDLTIV-------KPRMDAYREASREIHTIFRDYTEIIEPLSLDE 106
Query: 115 AYIDLTDVVH 124
AY+D++D H
Sbjct: 107 AYLDVSDSAH 116
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I ++IR V ++ SAG+A NK LAK+ KP ++ V + L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSGLPVSKL 183
Query: 251 RHLG-------GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+G GKLG C + E +K +L + F E+ L+ +ARGID
Sbjct: 184 HGVGKVTADKLGKLG-----ITDCLQLREWDKLALVREFGSFGER----LWSLARGIDER 234
Query: 304 PVN 306
V+
Sbjct: 235 VVH 237
>gi|118479340|ref|YP_896491.1| DNA polymerase IV [Bacillus thuringiensis str. Al Hakam]
gi|49330115|gb|AAT60761.1| possible DNA-damage-inducible protein P, DNA polymerase IV
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118418565|gb|ABK86984.1| possible DNA-damage-inducible protein P, DNA polymerase IV
[Bacillus thuringiensis str. Al Hakam]
Length = 415
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 12 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 71
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 72 WEAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 124
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 125 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 156
>gi|81686316|sp|Q635E0.1|DPO4_BACCZ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|51974822|gb|AAU16372.1| possible DNA-damage-inducible protein P, DNA polymerase IV
[Bacillus cereus E33L]
Length = 415
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 12 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 71
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 72 WEAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 124
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 125 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 156
>gi|30264219|ref|NP_846596.1| DNA polymerase IV [Bacillus anthracis str. Ames]
gi|47529662|ref|YP_021011.1| DNA polymerase IV [Bacillus anthracis str. 'Ames Ancestor']
gi|49187049|ref|YP_030301.1| DNA polymerase IV [Bacillus anthracis str. Sterne]
gi|161761257|ref|YP_038208.2| DNA polymerase IV [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|165871209|ref|ZP_02215859.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0488]
gi|167633521|ref|ZP_02391845.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0442]
gi|167639433|ref|ZP_02397704.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0193]
gi|170687127|ref|ZP_02878345.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0465]
gi|170705636|ref|ZP_02896099.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0389]
gi|177652672|ref|ZP_02935088.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0174]
gi|190565825|ref|ZP_03018744.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
Tsiankovskii-I]
gi|196034995|ref|ZP_03102402.1| putative DNA-damage-inducible protein P [Bacillus cereus W]
gi|196038607|ref|ZP_03105915.1| putative DNA-damage-inducible protein P [Bacillus cereus
NVH0597-99]
gi|196047181|ref|ZP_03114397.1| putative DNA-damage-inducible protein P [Bacillus cereus 03BB108]
gi|218905282|ref|YP_002453116.1| DNA polymerase IV [Bacillus cereus AH820]
gi|225866128|ref|YP_002751506.1| putative DNA-damage-inducible protein P [Bacillus cereus 03BB102]
gi|227816922|ref|YP_002816931.1| DNA polymerase IV [Bacillus anthracis str. CDC 684]
gi|228929193|ref|ZP_04092220.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228935466|ref|ZP_04098284.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228947863|ref|ZP_04110150.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|229123666|ref|ZP_04252861.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus 95/8201]
gi|229186390|ref|ZP_04313554.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus BGSC 6E1]
gi|229603294|ref|YP_002868441.1| DNA polymerase IV [Bacillus anthracis str. A0248]
gi|254683909|ref|ZP_05147769.1| DNA polymerase IV [Bacillus anthracis str. CNEVA-9066]
gi|254721744|ref|ZP_05183533.1| DNA polymerase IV [Bacillus anthracis str. A1055]
gi|254736257|ref|ZP_05193963.1| DNA polymerase IV [Bacillus anthracis str. Western North America
USA6153]
gi|254744146|ref|ZP_05201829.1| DNA polymerase IV [Bacillus anthracis str. Kruger B]
gi|254754071|ref|ZP_05206106.1| DNA polymerase IV [Bacillus anthracis str. Vollum]
gi|254758236|ref|ZP_05210263.1| DNA polymerase IV [Bacillus anthracis str. Australia 94]
gi|301055639|ref|YP_003793850.1| DNA polymerase IV [Bacillus cereus biovar anthracis str. CI]
gi|376268044|ref|YP_005120756.1| DNA polymerase IV [Bacillus cereus F837/76]
gi|386738038|ref|YP_006211219.1| DNA polymerase IV [Bacillus anthracis str. H9401]
gi|421506408|ref|ZP_15953331.1| DNA polymerase IV [Bacillus anthracis str. UR-1]
gi|421638227|ref|ZP_16078823.1| DNA polymerase IV [Bacillus anthracis str. BF1]
gi|423550107|ref|ZP_17526434.1| DNA polymerase IV [Bacillus cereus ISP3191]
gi|38372186|sp|Q81M86.1|DPO4_BACAN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|30258864|gb|AAP28082.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
Ames]
gi|47504810|gb|AAT33486.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
'Ames Ancestor']
gi|49180976|gb|AAT56352.1| DNA-damage-inducible protein P, putative [Bacillus anthracis str.
Sterne]
gi|164713128|gb|EDR18655.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0488]
gi|167512492|gb|EDR87867.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0193]
gi|167530927|gb|EDR93614.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0442]
gi|170129176|gb|EDS98040.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0389]
gi|170668744|gb|EDT19489.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0465]
gi|172082007|gb|EDT67075.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0174]
gi|190562744|gb|EDV16710.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
Tsiankovskii-I]
gi|195992534|gb|EDX56495.1| putative DNA-damage-inducible protein P [Bacillus cereus W]
gi|196021930|gb|EDX60621.1| putative DNA-damage-inducible protein P [Bacillus cereus 03BB108]
gi|196030330|gb|EDX68929.1| putative DNA-damage-inducible protein P [Bacillus cereus
NVH0597-99]
gi|218538485|gb|ACK90883.1| putative DNA-damage-inducible protein P [Bacillus cereus AH820]
gi|225785882|gb|ACO26099.1| putative DNA-damage-inducible protein P [Bacillus cereus 03BB102]
gi|227002646|gb|ACP12389.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
CDC 684]
gi|228597017|gb|EEK54673.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus BGSC 6E1]
gi|228659801|gb|EEL15446.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus 95/8201]
gi|228811850|gb|EEM58184.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228824218|gb|EEM70032.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228830483|gb|EEM76093.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|229267702|gb|ACQ49339.1| putative DNA-damage-inducible protein P [Bacillus anthracis str.
A0248]
gi|300377808|gb|ADK06712.1| DNA polymerase IV [Bacillus cereus biovar anthracis str. CI]
gi|364513844|gb|AEW57243.1| DNA polymerase IV [Bacillus cereus F837/76]
gi|384387890|gb|AFH85551.1| DNA polymerase IV [Bacillus anthracis str. H9401]
gi|401189723|gb|EJQ96773.1| DNA polymerase IV [Bacillus cereus ISP3191]
gi|401823401|gb|EJT22548.1| DNA polymerase IV [Bacillus anthracis str. UR-1]
gi|403394653|gb|EJY91893.1| DNA polymerase IV [Bacillus anthracis str. BF1]
Length = 412
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|161763548|ref|YP_085477.2| DNA polymerase IV [Bacillus cereus E33L]
Length = 412
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|228916783|ref|ZP_04080348.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228842970|gb|EEM88053.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 412
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|229093206|ref|ZP_04224324.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock3-42]
gi|228690180|gb|EEL43974.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock3-42]
Length = 412
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|229198275|ref|ZP_04324982.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus m1293]
gi|423574165|ref|ZP_17550284.1| DNA polymerase IV [Bacillus cereus MSX-D12]
gi|423604217|ref|ZP_17580110.1| DNA polymerase IV [Bacillus cereus VD102]
gi|228585154|gb|EEK43265.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus m1293]
gi|401212734|gb|EJR19477.1| DNA polymerase IV [Bacillus cereus MSX-D12]
gi|401245903|gb|EJR52256.1| DNA polymerase IV [Bacillus cereus VD102]
Length = 412
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|347525843|ref|YP_004832591.1| DNA polymerase IV [Lactobacillus ruminis ATCC 27782]
gi|345284802|gb|AEN78655.1| DNA polymerase IV [Lactobacillus ruminis ATCC 27782]
Length = 366
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/386 (23%), Positives = 151/386 (39%), Gaps = 81/386 (20%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIA-VNYEARHKGVTRHM 60
+R I +DMDCFY +E + N L GKP+ + + GG G+++ NY AR GV M
Sbjct: 2 ARKIIHVDMDCFYASIEVRDNQKLAGKPVVIARDPRHSGGKGVVSTANYVARSFGVHSAM 61
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+EA CP+ VP D KYR +E +
Sbjct: 62 NANEALNLCPDAVF--VPP-----DFKKYRQVSKE-----------------------IH 91
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
++ HE + IA D + ++ TE
Sbjct: 92 EIFHEYTDKVEPIA------------------------------------FDEAYLDVTE 115
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A +I I+ + KT CS GI++NK LAKL KP +++ +
Sbjct: 116 CKLGFKSATIIAHRIQQEIFEKTGLTCSTGISYNKFLAKLASDYAKPVGMTLVREDEALD 175
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS-HFEEKTASWLYYIARG 299
L I+K R +G K V++ + + + L +L H+ K + Y RG
Sbjct: 176 FLLPLKIEKFRGVGRK---TVIKMHELGVYNGYDLYGLSELDLIHYFGKMGHFFYEQVRG 232
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359
ID V + KS G + F L + +++ ++ A ++L DDLT ++ +
Sbjct: 233 IDDREVEWQRERKSFGVERTF--NMPLVSNEEIDEQLKWTA----QKLADDLTRAQKHGK 286
Query: 360 LLTVSFTQETDGKVNSCSRSIALASY 385
L V + + + + ++ + LA Y
Sbjct: 287 TLVV---KVRNSEFETKTKRLTLADY 309
>gi|296808205|ref|XP_002844441.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238843924|gb|EEQ33586.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 601
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 117/240 (48%), Gaps = 40/240 (16%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
+D DCFY V NP+L PLAV Q ++ NYEAR +G+ + +AK+
Sbjct: 35 VDYDCFYASVFEAENPALKTVPLAVQQKQI-----VVTCNYEARRRGLRKLQLIKDAKRI 89
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSE--FSNIVERASIDEAYIDLTDVVHER 126
CPE+ + V G+ D++K+R+ + + + L + + VER DE ++D+T ++
Sbjct: 90 CPEVVI-----VLGE-DLTKFRDVSKRLYSFLKSLVWGDRVERLGFDEVFLDVTSMIDYN 143
Query: 127 MKSIGHIAASQLSNTFV--------VGFGPDNNDEDARKAGVMEWLGQVYSDTDTS---- 174
++ + S ++N F VGF D+ + G Y D
Sbjct: 144 LQWL----ESNVTNAFFQLDKDDFSVGFEYDST----------VYCGPTYPPRDNDPRPE 189
Query: 175 -LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
++ +++ Q L +A + + +R + K + + GI+ +K+L+KLV +HKP+ Q+ L
Sbjct: 190 RVLHSSDLGQRLILASHLGKYLRKQLEEKQGYTSTVGISTSKLLSKLVGNIHKPRNQTTL 249
>gi|329114949|ref|ZP_08243704.1| DNA polymerase IV [Acetobacter pomorum DM001]
gi|326695392|gb|EGE47078.1| DNA polymerase IV [Acetobacter pomorum DM001]
Length = 360
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 119/241 (49%), Gaps = 27/241 (11%)
Query: 188 AGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSI 247
A I EEIRAA+L +T SAG+++NK LAKL KP Q ++P + ANL +
Sbjct: 123 ATAIAEEIRAAILHETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEAFVANLPV 182
Query: 248 KKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNA 307
H G + + TL T +L +FSL L+ HF K A++ Y IARG D PV
Sbjct: 183 NAF-HGVGPATAQRMHTLGIHTGADLRRFSLDILRQHF-GKAAAFYYGIARGKDDRPVEP 240
Query: 308 RLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEV---CERLEDDLTLNKRRAQLLTVS 364
KS+G K L T ++ + ELA +V C++ +LT R L +
Sbjct: 241 NRPRKSLG--KEITFAQDLRTSAELHAALHELAAKVWAGCQK--RNLT---GRTITLKLR 293
Query: 365 FTQETDGKVNSCSRSIALASYKLQD---IVEVSMQVINKTNSAPPISDLTPPLLFLGLSA 421
+T N C+RS++LA +QD + E++ +++ P+ + P+ LG++
Sbjct: 294 YTD-----FNQCTRSLSLAD-PVQDQEILAEMACRLLA------PLLPVRAPVRLLGITL 341
Query: 422 S 422
S
Sbjct: 342 S 342
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + NP+L G+P+AV + + G + A +YEAR GV M
Sbjct: 7 RRIIHIDMDAFYASVEQRDNPALKGQPVAVGR--CQERGVVAAASYEARKFGVRSAMPSV 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+A++ CP L VP + D+ YR ++ A+ + ++ +++ S+DEAY+D+T+
Sbjct: 65 QAQRKCP--HLIFVPP---RFDV--YRAVSAQIHAIFARYTPLIQPLSLDEAYLDVTN 115
>gi|373856739|ref|ZP_09599483.1| DNA-directed DNA polymerase [Bacillus sp. 1NLA3E]
gi|372453718|gb|EHP27185.1| DNA-directed DNA polymerase [Bacillus sp. 1NLA3E]
Length = 433
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+ FY VE +PSL GKPLA+ + G I+ +YEAR GV M
Sbjct: 9 GRVILHVDMNSFYASVEMAHDPSLKGKPLAIAGNVEERRGIIVTCSYEARKFGVKTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP+I + R P + +YR A + +L +S +VE SIDE Y+D+TD
Sbjct: 69 WQAKKLCPQI-IVRKP------NFDRYRAASTSMFDILRRYSQLVEPVSIDEGYMDITD 120
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 131/298 (43%), Gaps = 31/298 (10%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D M+ T+ + EL I E I+ +L + CS GIA NK LAK+ + KP +
Sbjct: 112 DEGYMDITDSY-ELGSPLQIAESIQEVLLKELDIPCSIGIAPNKFLAKMASDMKKPLGIT 170
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
IL + +S + + ++ +G K +++ L T+ +L K + QL++
Sbjct: 171 ILRKRDISSVLWPMEAGEMHGVGKKTAEKLA-PLGILTIGDLAKANDIQLKALLGINGLR 229
Query: 292 WLYYIARGIDHEPVNARLVS--KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED 349
L A G+D VN V KSIG T LA +DVS+ Q L +V E L +
Sbjct: 230 -LKDRANGVDKRTVNPESVYDFKSIG------NSTTLA--KDVSN--QHLLFQVIEGLVE 278
Query: 350 DLTLNKRRAQLL--TVSFT-QETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPP 406
+T +R ++L T+S T + D K + S+ + +DI + ++ K + P
Sbjct: 279 KVTQRLKRKKVLAQTISVTIRYKDRKTITRSKKLTNPIGSSEDINAAAKRLFLKHWNGEP 338
Query: 407 ISDLTPPLLFLGLSASKFSPLGSHPSIQQF----FKPQDHPEPMTSEHSSLPEQSTNH 460
I LG++ + L +I+Q F+ + EP+ L E+ H
Sbjct: 339 IR-------LLGVTGTDL--LEQDDAIKQLDLFSFEQEAKKEPLYHTMEMLREKYGKH 387
>gi|365877904|ref|ZP_09417398.1| DNA polymerase IV [Elizabethkingia anophelis Ag1]
gi|442586482|ref|ZP_21005311.1| DNA polymerase IV [Elizabethkingia anophelis R26]
gi|365754447|gb|EHM96392.1| DNA polymerase IV [Elizabethkingia anophelis Ag1]
gi|442563801|gb|ELR81007.1| DNA polymerase IV [Elizabethkingia anophelis R26]
Length = 363
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 75/346 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE NP L GKP+AV + G + A +YEAR GV M
Sbjct: 8 RKIIHVDMDAFYASVEQHDNPELKGKPIAVGGVHR---GVVAAASYEARQYGVRSAMPSK 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A+Q CP + R +R Y+ +++ + E++++VE S+DEAY+D+T
Sbjct: 65 TAQQKCPNLIFVRPRFLR-------YKEISQQIRQIFYEYTDLVEPLSLDEAYLDVT--- 114
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
E K I +A+Q++ +E +++ T +
Sbjct: 115 -ENKKGIE--SANQIA---------------------LEIRKKIFEKTGLT--------- 141
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSMLY 242
A AG+ V + A V S ++KP Q +I PQ+ +S L
Sbjct: 142 --ASAGISVNKFLAKVAS---------------------DINKPNGQKTIHPQNVLSFL- 177
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L I+K + GK+ + TL +L+ SL++L F K+ Y + RGI +
Sbjct: 178 EELPIEKFYGI-GKVTANKMNTLSIYKGKDLKNKSLEELVLLF-GKSGKHYYNVVRGIQY 235
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
V ++KS+ + F L V I E+ DE+ RLE
Sbjct: 236 SEVKPHRIAKSVAVEETF--WEDLLDEDTVFEKIDEITDELFRRLE 279
>gi|406663875|ref|ZP_11071888.1| DNA polymerase IV [Cecembia lonarensis LW9]
gi|405551867|gb|EKB47480.1| DNA polymerase IV [Cecembia lonarensis LW9]
Length = 361
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 173/419 (41%), Gaps = 87/419 (20%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE NP L GKP+AV + G + A +YEAR GV M G
Sbjct: 5 RKIIHVDMDAFYASVEQMDNPDLRGKPVAVG--GNRERGVVAAASYEARFYGVRSAMSGK 62
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A CP++ K +Y+ E SN I E + D TD+V
Sbjct: 63 LAALKCPKLVFV-------KPRFDRYK-----------ELSN-----QIREIFYDYTDLV 99
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ TE+
Sbjct: 100 E-----------------------PLSLDE--------------------AFLDVTENKV 116
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSVSMLY 242
A +I +EIR + + + SAGI++NK LAK ++KP Q+ ILP+ + + L
Sbjct: 117 NNPSATLIAQEIRGRIREEVGLNASAGISYNKFLAKTASDINKPNGQAVILPKEAEAFL- 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
L I+K + GK+ E ++++ +L++FS++ L F K+ + I RGI
Sbjct: 176 EKLPIEKFFGI-GKVTAEKMKSIGIHNGHDLKQFSIQYLTKKF-GKSGLHFFNIVRGIHL 233
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLT 362
V + KS+ F + L+ R + E+ +E+ R+ + T K R L
Sbjct: 234 SEVQPNRIRKSLSAENTF--EKDLSDRVSFEAALLEIFEELKRRI--NRTGIKGRTVTLK 289
Query: 363 VSFTQETDGKVNSCSRSIALASY-KLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLS 420
+ ++ T +RS Y + Q I E M ++ + A P+ L +GLS
Sbjct: 290 IKYSDFT-----IQTRSKTFEQYPEEQKIWETVMDLLQQDALALPVR-----LFGIGLS 338
>gi|408375702|ref|ZP_11173359.1| DNA polymerase IV [Alcanivorax hongdengensis A-11-3]
gi|407764420|gb|EKF72900.1| DNA polymerase IV [Alcanivorax hongdengensis A-11-3]
Length = 368
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 146/353 (41%), Gaps = 87/353 (24%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R I +D DCFY VE + + SL +P+AV + + G I NY ARH GV M
Sbjct: 5 ARKIIHVDCDCFYAAVEMRDDASLRHRPVAVGG-DPHRRGVIATCNYAARHFGVRSAMAS 63
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+A + CPE+ + VP + KYR E+ + F++ +E S+DEAY+D++D
Sbjct: 64 SQALRLCPELVI--VPP-----NFDKYRKVSAEIHTIFRRFTSQIEPLSLDEAYLDVSD- 115
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
+ Y ++ T + E
Sbjct: 116 ------------------------------------------SKQYHNSATRIAE----- 128
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
+ EIR +T SAG+A NK LAK+ KP ++ V
Sbjct: 129 -------ALRREIR----QETGITVSAGVAPNKFLAKVASDWRKPDGLFVITPQQVEDFV 177
Query: 243 ANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
L + ++ + G++ E + +L C+ + + + L Q F E+ LY+++RG
Sbjct: 178 KALPVTRISGV-GRVTAERMASLGLKTCADLQAMTRLELGQQFGSFGER----LYHLSRG 232
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSH---WIQELADEVCERLED 349
D+ PV KS+ + + +D H W++EL D + E+L +
Sbjct: 233 EDNRPVQTGRRRKSVSVERTYD--------KDHPHLNDWLREL-DGLLEKLRE 276
>gi|229104751|ref|ZP_04235412.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock3-28]
gi|228678624|gb|EEL32840.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock3-28]
Length = 412
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQLVIRR-------PNFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
Score = 39.7 bits (91), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I + I+ A+L++ Q CS GIA N LAK + KP ++L + +S L L + +
Sbjct: 130 IAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDISELIWPLPVGAM 189
Query: 251 RHLGGKLGDEV 261
+G K +++
Sbjct: 190 HGIGEKTAEKL 200
>gi|387887275|ref|YP_006317574.1| DNA-directed DNA polymerase [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386872091|gb|AFJ44098.1| DNA-directed DNA polymerase [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 282
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 131/313 (41%), Gaps = 71/313 (22%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R I IDMD F+ QVE K NPSL KP V N K G I NY AR GV
Sbjct: 4 TRKIIHIDMDYFFAQVEEKANPSLKDKPFVVGGTNP-KRGVISTCNYIAREYGVHSATPT 62
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A Q CP + L D +KY+ + V F++ VE S
Sbjct: 63 AIAMQKCPNLILLN-------TDFAKYKAKSSIIREVFKTFTDKVEPLS----------- 104
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTED 181
L + Y D TD + +N+
Sbjct: 105 -----------------------------------------LDEAYLDVTDVAAYKNS-- 121
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
A +I + I+ + +KT+ SAG+A NK+LAK+V ++KP ++ V+
Sbjct: 122 ------ATLIAQAIKQEIFNKTRLTGSAGVAPNKLLAKIVSDINKPNGLYVITPEQVNDF 175
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
+L IKK + G++ E ++++ T L+L++ SL L F K S LY ARGID
Sbjct: 176 VKDLPIKKFFCV-GRVSQEKLKSMNVETCLDLQQLSLTTLLDKF-GKFGSSLYNYARGID 233
Query: 302 HEPVNARLVSKSI 314
+ VN + KS+
Sbjct: 234 NREVNPVSIRKSV 246
>gi|171689356|ref|XP_001909618.1| hypothetical protein [Podospora anserina S mat+]
gi|170944640|emb|CAP70751.1| unnamed protein product [Podospora anserina S mat+]
Length = 575
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 119/263 (45%), Gaps = 31/263 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I D+DCFY Q NP L PL + Q + + NY AR GV + M
Sbjct: 22 RVILHFDLDCFYAQCIENANPHLKSVPLGIKQKSI-----LATCNYVARKHGVKKLMGIQ 76
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLTD 121
EAK+ CP++ L D+S +R+ +++ ++L +S VER +DE ++D+TD
Sbjct: 77 EAKRLCPDLVLA------DGEDLSPFRDVSKQIYSLLKSYSWNGRVERLGLDEVFLDVTD 130
Query: 122 VVHERMKSIGHIAASQLSNTFVV-------GFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
VV + + H + + F + GF DAR+ W SD +
Sbjct: 131 VVAYNLGLVNHHCLEE--SWFCLSREDPERGFA-----FDAREVEGCVWPPDFVSDREN- 182
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
E T+ + + G + + + + GI+ NK+LAKL +KP+ Q+ L
Sbjct: 183 --EGTDSLRLRLLFGSHLAFYLRQQMEGLGYTSACGISTNKLLAKLAGDRNKPRNQTTLL 240
Query: 235 QS-SVSMLYANLSIKKVRHLGGK 256
S S L ++K+ +GGK
Sbjct: 241 SSHSPLPFLDPLPLRKIPGIGGK 263
>gi|229075853|ref|ZP_04208829.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock4-18]
gi|228707168|gb|EEL59365.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock4-18]
Length = 424
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 21 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 80
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 81 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 133
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 134 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 165
>gi|421075328|ref|ZP_15536343.1| DNA polymerase IV [Pelosinus fermentans JBW45]
gi|392526770|gb|EIW49881.1| DNA polymerase IV [Pelosinus fermentans JBW45]
Length = 387
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 157/372 (42%), Gaps = 88/372 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG----GIIA-VNYEARHKGVTR 58
R I IDMD F+ VE + N +L GKPL V GG G++A +YEAR GV
Sbjct: 3 RWIIHIDMDAFFAAVEQRDNEALRGKPLIV-------GGIGNRGVVATASYEARRFGVHS 55
Query: 59 HMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYID 118
M EA++ CP+ VP D +KY E+ + SEFS +VE S+DEA++D
Sbjct: 56 AMSMVEARRRCPDGNF--VP-----CDHAKYNRVSVELQRIFSEFSPVVEPLSLDEAFLD 108
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
+T ME Q+Y+
Sbjct: 109 VTG---------------------------------------ME---QLYASP------- 119
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
+E+A+ I+ + S+ SAG+A NK LAKL + KP ++
Sbjct: 120 ----KEIAVC------IKERIESELHLTASAGVAPNKFLAKLASEMKKPNGLFVVYPGEE 169
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
+ +L I + +G + ++++ L T+ +L + ++ L H + A ++ +A
Sbjct: 170 EAMLRDLPITSMWGVGKSMA-QILKNLGIYTIGQLAQTNVALLVKHCGQ-MAYKIHALAH 227
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLED------DLT 352
G D PV A L KSIG FP + T + + LA++V RL +T
Sbjct: 228 GQDDRPVVADLEPKSIGNELTFP--VDIITVSQIETELLALAEKVGWRLRQYDYSGKTIT 285
Query: 353 LNKRRAQLLTVS 364
+ R A T++
Sbjct: 286 IKVRFASFKTIT 297
>gi|423612369|ref|ZP_17588230.1| DNA polymerase IV [Bacillus cereus VD107]
gi|401245958|gb|EJR52310.1| DNA polymerase IV [Bacillus cereus VD107]
Length = 412
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +P L GKPLA+ + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDPPLKGKPLAIAGNEKERKGIIITCSYEARDYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITD 120
>gi|77408795|ref|ZP_00785524.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|421147957|ref|ZP_15607629.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
gi|77172576|gb|EAO75716.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|401685295|gb|EJS81303.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
Length = 364
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 145/360 (40%), Gaps = 80/360 (22%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NPSL GKP+ + GG G+++ NYEAR GV
Sbjct: 10 TSRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR G +E I + Y DL
Sbjct: 70 MSSKEAYERCPQ-------AIFISGNYQKYRQVG-------------MEVRDIFKKYTDL 109
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE + ++ T
Sbjct: 110 VE--------------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSV 238
E+ + A + + I+ + + CSAGI++NK LAKL KP+ + ILP +
Sbjct: 124 ENKMGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTFILPDQAQ 183
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCST---MLELEKFSLKQLQSHFEEKTASWLYY 295
L L I+K H GK E + L T +L L + SL + F LY
Sbjct: 184 DFL-KPLPIEKF-HGVGKRSVEKLHALGVYTGEDLLSLSEISLIDMFGRF----GYDLYR 237
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
ARGI+ PV V KSIG K + GK L D+ I + V LE + + K
Sbjct: 238 KARGINASPVKPNRVRKSIGSEKTY-GK-LLYNEADIKAEISKNVQRVVASLEKNKKVGK 295
>gi|398987101|ref|ZP_10691851.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM24]
gi|399016028|ref|ZP_10718278.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM16]
gi|398106777|gb|EJL96795.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM16]
gi|398151124|gb|EJM39684.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM24]
Length = 353
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 20/130 (15%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I ID DCFY +E + +P L GKPLAV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDDPRLAGKPLAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + YR A +E+ + +++++++E S+DE
Sbjct: 54 GVRSAMASGHALKLCPDLTIV-------KPRMDAYREASKEIHTIFADYTDLIEPLSLDE 106
Query: 115 AYIDLTDVVH 124
AY+D++D H
Sbjct: 107 AYLDVSDSAH 116
>gi|452847503|gb|EME49435.1| hypothetical protein DOTSEDRAFT_40641 [Dothistroma septosporum
NZE10]
Length = 669
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 119/278 (42%), Gaps = 40/278 (14%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII D DCFY V P L P AV Q I+ NYEAR +G+ +
Sbjct: 12 GRIIIHFDYDCFYASVFEAKRPELKSLPFAVQQKQI-----IVTCNYEARRRGLHKLQLI 66
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFS--NIVERASIDEAYIDLT 120
EAK+ CP++ + D+S++R+A +E+ + + FS N +ER DE ++D T
Sbjct: 67 REAKRVCPDV------VIELGEDLSRFRDASKELYSFVKSFSWNNKIERLGFDEIWMDTT 120
Query: 121 DVVHERMK-----SIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD--TDT 173
D+V + + H + GF D G Y +
Sbjct: 121 DIVDYNISILNKNDLQHCFFQTSKDDLTAGFSFD----------ATALAGHPYPANCVED 170
Query: 174 SLMENTEDFQ-ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-S 231
S E+ +D L + + IR + + + GIA K+L+KLV L+KP+ Q +
Sbjct: 171 SFDESLDDLALRLKLGSHLALHIRHQLEEVKGYTSTVGIATTKLLSKLVGNLNKPKGQTT 230
Query: 232 ILP--------QSSVSMLYANLSIKKVRHLGGKLGDEV 261
++P Q +V+ + I +V +G K+ +
Sbjct: 231 MMPPFETMDERQGNVTAFMDSYEIGQVPGIGFKIAQRL 268
>gi|386819686|ref|ZP_10106902.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
gi|386424792|gb|EIJ38622.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
Length = 367
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 24/169 (14%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE NP L GKPLAV K G + A +YEAR GV M G
Sbjct: 8 RKIIHVDMDAFYASVEQMDNPELKGKPLAVG--GNEKRGVVSAASYEARKFGVRSAMSGY 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD-- 121
+AK++CPE+ R +Y+ ++ + E++++VE S+DEAY+D+T+
Sbjct: 66 QAKKNCPELIFVR-------PRFDRYKEISTKIRTIFLEYTDLVEPLSLDEAYLDVTENK 118
Query: 122 -----------VVHERM-KSIGHIAASQLS-NTFVVGFGPDNNDEDARK 157
+ +R+ + +G A++ +S N FV D N + +K
Sbjct: 119 KGNPSASNIAKEIRDRIFEEVGLTASAGISINKFVAKIASDYNKPNGQK 167
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 4/177 (2%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D + ++ TE+ + A I +EIR + + SAGI+ NK +AK+ +KP Q
Sbjct: 108 DEAYLDVTENKKGNPSASNIAKEIRDRIFEEVGLTASAGISINKFVAKIASDYNKPNGQK 167
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
+ V +L I+K + GK+ + + +L T +L++ S++ L +F K+ +
Sbjct: 168 TVEPDEVIPFLEDLEIRKFYGV-GKVTTQKMYSLGIFTGKDLKEKSVEFLTENF-GKSGA 225
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
+ Y + RGI V + KS+G + F L++ + ++ +A+E+ RL+
Sbjct: 226 FYYNVVRGIHLSEVKPNRIPKSVGAERTFS--ENLSSEVFMLERLESIANELERRLK 280
>gi|327350463|gb|EGE79320.1| DNA polymerase iota [Ajellomyces dermatitidis ATCC 18188]
Length = 754
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 118/265 (44%), Gaps = 51/265 (19%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII D DCFY V NP+L PLAV Q ++ NYEAR +G+ +
Sbjct: 19 SRIILHFDYDCFYASVFEAENPALKSLPLAVQQKQI-----VVTCNYEARRRGLRKLQLI 73
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEF----SNIVERASIDEAYID 118
EAK+ CP++ + VP D++K+R+A +E+ + L F VER DE ++D
Sbjct: 74 KEAKKVCPDVVI--VPG----EDLTKFRDASKEIYSFLRGFVSGWGGRVERLGFDEVFLD 127
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDE------DARKAGVMEWL--GQV-YS 169
+T +V + + H + LS++F F D D DAR + GQ ++
Sbjct: 128 VTSLVDYNIDLLNH---NDLSSSF---FHLDKTDPTQGFAYDARTVSGPSYPPSGQTPHT 181
Query: 170 DTDTSLMENTEDFQ---------------------ELAIAGVIVEEIRAAVLSKTQFHCS 208
+ S T D Q L + + IR + + +
Sbjct: 182 SLNGSAPSATSDSQTHPFSPNSNNANANANLQLLQRLILGSHLASYIRHQLEEHKSYTAT 241
Query: 209 AGIAHNKVLAKLVCGLHKPQKQSIL 233
GI+ +K+LAKL +HKP+ Q+ L
Sbjct: 242 VGISTSKLLAKLAGNVHKPRNQTTL 266
>gi|387813337|ref|YP_005428819.1| DNA polymerase IV [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381338349|emb|CCG94396.1| DNA polymerase IV [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 353
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 127/320 (39%), Gaps = 70/320 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I +D DCFY VE + +PSL PLAV + NY AR GV M
Sbjct: 1 MAQRKIIHVDCDCFYAAVEMRDDPSLRDVPLAVGGEGGRGV--VTTCNYRARAFGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
G EA++ CP L VP D+ +YR ++V+A+L E +++VE S+DEA++
Sbjct: 59 PGSEARRLCPG--LVTVPP-----DMGRYRAVSQQVMAILREMTDLVEPLSLDEAFL--- 108
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D D DA K
Sbjct: 109 ----------------------------DVTDVDAFKGS--------------------- 119
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A ++ +R V + SAG+A NK LAK+ KP ++ V+
Sbjct: 120 -------ATLMARHLRERVSREVGITISAGVAPNKFLAKIASDWRKPDGLFVITPPEVAD 172
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ L ++K+ + G++ + L T +++ L F K L+ +A G
Sbjct: 173 FVSELPVEKLFGV-GQVTAARLHALGVKTCGDMQALGADVLIEKF-GKQGYRLFEMAHGR 230
Query: 301 DHEPVNARLVSKSIGCCKRF 320
D+ PV V+KS+ + F
Sbjct: 231 DNRPVVVSRVAKSVSVERTF 250
>gi|366090384|ref|ZP_09456750.1| DNA polymerase IV [Lactobacillus acidipiscis KCTC 13900]
Length = 367
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 93/365 (25%), Positives = 144/365 (39%), Gaps = 76/365 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIA-VNYEARHKGVTR 58
M R I IDMD FY +E + +P L PL + + GG G++A NY AR G+
Sbjct: 1 MDDRKIIHIDMDAFYASIEMRDDPKLASLPLIIARDPRKTGGHGVVATANYVARSYGIHS 60
Query: 59 HMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYID 118
M +A + C + + D KYR ++
Sbjct: 61 AMSSQKALKLCSQ-------AYFKDPDFKKYRAVSNQI---------------------- 91
Query: 119 LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
++ HE I IA D + ++
Sbjct: 92 -HEIFHEYTDYIEPIAF------------------------------------DEAYLDI 114
Query: 179 TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSV 238
T + + L A I+ + +K CSAGI++NK LAKL KP +++ Q V
Sbjct: 115 TSNKKHLDSALQTARMIQQEIFTKVHLTCSAGISYNKFLAKLASDYRKPVGITLVRQDEV 174
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
L+I+K R +G K + + L T +L + S +L SHF K LY R
Sbjct: 175 QDFLFPLAIEKFRGVGKKTVPK-MHQLGVFTGKDLYQLSSGELISHF-GKMGYILYQRVR 232
Query: 299 GIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRA 358
GID PV + + KS+G + F L T V +++Q+ A +RL D+L ++
Sbjct: 233 GIDERPVEWQRIRKSLGNERTF--DRPLTTVASVENFLQKSA----KRLADELDQQQKHG 286
Query: 359 QLLTV 363
+ L +
Sbjct: 287 KTLVI 291
>gi|190894484|ref|YP_001984777.1| DNA polymerase IV [Rhizobium etli CIAT 652]
gi|190700145|gb|ACE94227.1| DNA-directed DNA polymerase protein [Rhizobium etli CIAT 652]
Length = 362
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 129/317 (40%), Gaps = 70/317 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD FY VE + N L GKP+AV + G + A +YEAR GV M
Sbjct: 10 RKIVHIDMDAFYASVEQRDNQDLRGKPIAV--GGSAARGVVAAASYEARAYGVHSAM--- 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
PSV K E+I V F D+ V
Sbjct: 65 --------------PSVTAKRKCP-------ELIFVAPRF--------------DVYKAV 89
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
++++ I A V+E L D + ++ T + +
Sbjct: 90 SQQIREI-----------------------FAEYTAVIEPL-----SLDEAYLDVTHNLK 121
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
+ IA I EIRA + T + SAGI++NK LAK+ L+KP Q+++ +
Sbjct: 122 GMEIATEIALEIRAKIKQATGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVE 181
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L +KK +G D+ + L T +L+ +L+ L HF K+ + + IARGID
Sbjct: 182 ALPVKKFHGVGPATADK-MHRLGIDTGADLKGKTLEFLVEHF-GKSGPYFHGIARGIDER 239
Query: 304 PVNARLVSKSIGCCKRF 320
V V KS+G F
Sbjct: 240 QVKPNRVRKSVGAEDTF 256
>gi|86145684|ref|ZP_01064014.1| DNA polymerase IV [Vibrio sp. MED222]
gi|85836655|gb|EAQ54781.1| DNA polymerase IV [Vibrio sp. MED222]
Length = 358
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 133/317 (41%), Gaps = 69/317 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMDCFY VE + NP+ +PLAV + +G + NYEAR G+ M
Sbjct: 10 RKIIHVDMDCFYAAVEMRDNPAYRNRPLAVGGHEKQRGV-LSTCNYEARKFGIRSAMPTG 68
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A Q CP L VP +S Y +++ + S +++I+E S+DEA++D+
Sbjct: 69 KALQLCPN--LLVVP-----GRMSVYVEISKKIREIFSRYTSIIEPLSLDEAFLDV---- 117
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
TD++L +
Sbjct: 118 -----------------------------------------------TDSTLCRGS---- 126
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
A +I E IR + ++ SAGIA K LAK+ L+KP Q ++P V +
Sbjct: 127 ----ATLIAEAIRRDIWNELNLTASAGIAPIKFLAKVASDLNKPNGQFVIPPQDVQSVID 182
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
L ++K+ + GK+ E + T ++++ + L F + AS L+ + GID
Sbjct: 183 ELPLEKIPGV-GKVSIEKLHQAGFFTCKDIKESDYRDLLLRFGRQGAS-LWKRSHGIDDR 240
Query: 304 PVNARLVSKSIGCCKRF 320
V KS+G + F
Sbjct: 241 EVIIERERKSVGVERTF 257
>gi|418056114|ref|ZP_12694168.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
gi|353210392|gb|EHB75794.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
Length = 360
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 121/257 (47%), Gaps = 21/257 (8%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D + ++ TE+ + L A EIRA +L++T SAG+++NK LAKL + KP Q
Sbjct: 107 DEAYLDVTENLRGLPTASDTAAEIRARILAETGLTASAGVSYNKFLAKLASDVRKPNGQF 166
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
++P + L +K+ H G + E + L T +L SL+ LQ HF ++ +
Sbjct: 167 VIPPQRGAEFIEGLPVKQF-HGVGPVTAEKMNALGIQTGADLRAQSLEFLQQHF-GRSGA 224
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEV---CERLE 348
W Y IARG D PV KS G F L ++ + E+AD+V CE+
Sbjct: 225 WYYAIARGEDDRPVEPNRPRKSSGSETTFSEDRLLPA--EIEAGVLEMADDVWAWCEK-- 280
Query: 349 DDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPIS 408
N+ +TV + D ++ + SR+ + + E+S+ ++ I
Sbjct: 281 -----NQSFGATVTVKI-KFADFRIVTRSRTASRPVTAHDLLHEISLALVRS------IY 328
Query: 409 DLTPPLLFLGLSASKFS 425
+T + +G+S SKFS
Sbjct: 329 PVTTGVRLVGVSVSKFS 345
>gi|307261524|ref|ZP_07543193.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306868807|gb|EFN00615.1| DNA polymerase IV [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
Length = 356
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 102/413 (24%), Positives = 169/413 (40%), Gaps = 97/413 (23%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHM 60
T R I IDMDCFY +E + NP+L GKP+AV + +G G++ NYEAR G+ M
Sbjct: 3 TQRKIIHIDMDCFYAAIEMRENPALIGKPVAV--GGSVEGRGVLTTCNYEARKFGLHSAM 60
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + L VP ++ Y+ ++ + +++IVE S+DEAY+D+T
Sbjct: 61 PTAQALKRCPNLIL--VP-----VNMPLYKAVSEQIHQIFRRYTDIVEPLSLDEAYLDVT 113
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D Q S G W+ Q
Sbjct: 114 D-------------CRQCS-------------------GSATWIAQ-------------- 127
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
EIR A+ ++ S GIA K LAK+ +KP Q ++ +++
Sbjct: 128 -------------EIRDAIWNELHLTASVGIAPLKFLAKIASDQNKPNGQFVISPENMTA 174
Query: 241 LYANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+L +KK+ + GK+ +E + L C + +K + + F ++ L+ +
Sbjct: 175 FIYDLPLKKIPGV-GKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQR----LWDFS 229
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTC-LATRQDVSHWIQELADEVCERLEDDLT---- 352
ID+ + A KS+ P LA + + + EL ++ RL+ +
Sbjct: 230 HAIDNRKIEANRPRKSLAVENTLPTDIWHLAEAEQI---VDELFKKLVFRLQRNWGERSL 286
Query: 353 --LNKRRAQLLTVSFTQET-DGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
K +L FTQ T + + SR + +E+ QV +TN
Sbjct: 287 QEFKKLAIKLKFGDFTQTTLERTTDGLSR---------ERFIELLQQVWQRTN 330
>gi|407706673|ref|YP_006830258.1| cystathionine gamma-synthase / cysteine synthase [Bacillus
thuringiensis MC28]
gi|407384358|gb|AFU14859.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis MC28]
Length = 439
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 36 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 95
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 96 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITD 147
>gi|255947808|ref|XP_002564671.1| Pc22g06410 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591688|emb|CAP97929.1| Pc22g06410 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 572
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 130/273 (47%), Gaps = 38/273 (13%)
Query: 10 DMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHC 69
D DCFY V P L PLAV Q ++ NYEAR +G+ + +AK+ C
Sbjct: 35 DYDCFYASVFEVEQPELRSLPLAVQQKQI-----VVTCNYEARRRGLHKLQLIKDAKRIC 89
Query: 70 PEIELCRVPSVRGKADISKYRNAGREVIAVLSEF--SNIVERASIDEAYIDLTDVVHERM 127
P++ + V G+ D++K+RNA RE+ ++ F VE+ DE ++D+T+++
Sbjct: 90 PDVVI-----VLGE-DLTKFRNASRELYQLVRSFVWGGRVEKLGFDELFLDVTEMID--- 140
Query: 128 KSIGHIAASQLSNTFV--------VGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ G + L N++ VGF D ME ++ +S M
Sbjct: 141 YNTGVQNQNDLENSYFHLDRNDPTVGFSYDATRFQGSTFPAMEAACIARKNSSSSEMR-- 198
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILP---- 234
L +A + IR+ + + F + GI+ +K+LAKLV +HKP Q ++LP
Sbjct: 199 -----LLVASHLQGHIRSKLEHEIGFTATGGISTSKLLAKLVGNVHKPNGQTTLLPPYTA 253
Query: 235 -QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQ 266
+++ S ++ L ++R + G +G + + L+
Sbjct: 254 TENNTSNVFQFLDDHEIRKIPG-IGSRIAQKLK 285
>gi|343519619|ref|ZP_08756598.1| ImpB/MucB/SamB family protein [Haemophilus pittmaniae HK 85]
gi|343392466|gb|EGV05032.1| ImpB/MucB/SamB family protein [Haemophilus pittmaniae HK 85]
Length = 305
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 133/312 (42%), Gaps = 69/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMDCFY VE + NP L G P+AV + + G + NYEAR G+ M
Sbjct: 5 RKIIHVDMDCFYASVEIRENPKLQGFPVAVGGLSRQR-GVLTTCNYEARKFGLHSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A + CP++ L V ++ Y+ ++ + +++++E S+DEAY+D+TD
Sbjct: 64 QAIKKCPKLILVPV-------NMPLYKQVSAQIHQIFKRYTDLIEPLSLDEAYLDVTDC- 115
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
+ Q S T++ ED R+ +Q
Sbjct: 116 ----------SMLQGSATWIA--------EDIRR----------------------HIWQ 135
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
EL Q SAG+A K LAK+ ++KP Q ++ V
Sbjct: 136 EL------------------QLTASAGVAPLKFLAKIASDMNKPNGQFVIKPEEVEAFVR 177
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L + K+ + GK+ E +E + +T ++++ L + F K ++ + G+D+
Sbjct: 178 SLHLSKIPGV-GKVTAERLEQMGLTTCADIQRMDQSVLLNIF-GKMGQRIWDFSHGVDNR 235
Query: 304 PVNARLVSKSIG 315
V KS+G
Sbjct: 236 QVQPHRERKSVG 247
>gi|319782620|ref|YP_004142096.1| DNA-directed DNA polymerase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317168508|gb|ADV12046.1| DNA-directed DNA polymerase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 415
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 10 DMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHC 69
D+D FY VE L+PSL GKP+AV GG ++A +YEAR GV M G A++ C
Sbjct: 11 DLDAFYASVEQLLDPSLRGKPIAV------GGGVVLAASYEARAFGVRGGMPGRRARELC 64
Query: 70 PEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
P + + S Y+ G I VL +F+ +VER SIDEA+ D+ H
Sbjct: 65 PHLIFV-------GGNFSHYQRLGDAAIKVLDDFTPVVERISIDEAFADVAGCTH 112
>gi|229098616|ref|ZP_04229556.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock3-29]
gi|229117642|ref|ZP_04247013.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock1-3]
gi|423377996|ref|ZP_17355280.1| DNA polymerase IV [Bacillus cereus BAG1O-2]
gi|423441117|ref|ZP_17418023.1| DNA polymerase IV [Bacillus cereus BAG4X2-1]
gi|423448727|ref|ZP_17425606.1| DNA polymerase IV [Bacillus cereus BAG5O-1]
gi|423464191|ref|ZP_17440959.1| DNA polymerase IV [Bacillus cereus BAG6O-1]
gi|423533533|ref|ZP_17509951.1| DNA polymerase IV [Bacillus cereus HuB2-9]
gi|423541211|ref|ZP_17517602.1| DNA polymerase IV [Bacillus cereus HuB4-10]
gi|423547449|ref|ZP_17523807.1| DNA polymerase IV [Bacillus cereus HuB5-5]
gi|423615517|ref|ZP_17591351.1| DNA polymerase IV [Bacillus cereus VD115]
gi|423622768|ref|ZP_17598546.1| DNA polymerase IV [Bacillus cereus VD148]
gi|228665821|gb|EEL21292.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock1-3]
gi|228684695|gb|EEL38633.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock3-29]
gi|401129321|gb|EJQ37004.1| DNA polymerase IV [Bacillus cereus BAG5O-1]
gi|401172399|gb|EJQ79620.1| DNA polymerase IV [Bacillus cereus HuB4-10]
gi|401179170|gb|EJQ86343.1| DNA polymerase IV [Bacillus cereus HuB5-5]
gi|401260054|gb|EJR66227.1| DNA polymerase IV [Bacillus cereus VD115]
gi|401260888|gb|EJR67056.1| DNA polymerase IV [Bacillus cereus VD148]
gi|401636262|gb|EJS54016.1| DNA polymerase IV [Bacillus cereus BAG1O-2]
gi|402417778|gb|EJV50078.1| DNA polymerase IV [Bacillus cereus BAG4X2-1]
gi|402420458|gb|EJV52729.1| DNA polymerase IV [Bacillus cereus BAG6O-1]
gi|402463752|gb|EJV95452.1| DNA polymerase IV [Bacillus cereus HuB2-9]
Length = 412
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-VVRHP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
>gi|120555244|ref|YP_959595.1| DNA-directed DNA polymerase [Marinobacter aquaeolei VT8]
gi|189027669|sp|A1U339.1|DPO4_MARAV RecName: Full=DNA polymerase IV; Short=Pol IV
gi|120325093|gb|ABM19408.1| DNA-directed DNA polymerase [Marinobacter aquaeolei VT8]
Length = 353
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 127/320 (39%), Gaps = 70/320 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I +D DCFY VE + +PSL PLAV + NY AR GV M
Sbjct: 1 MAQRKIIHVDCDCFYAAVEMRDDPSLRDVPLAVGGEGGRGV--VTTCNYRARAFGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
G EA++ CP L VP D+ +YR ++V+A+L E +++VE S+DEA++
Sbjct: 59 PGSEARRLCPG--LVTVPP-----DMGRYRAVSQQVMAILREMTDLVEPLSLDEAFL--- 108
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D D DA K
Sbjct: 109 ----------------------------DVTDVDAFKGS--------------------- 119
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A ++ +R V + SAG+A NK LAK+ KP ++ V+
Sbjct: 120 -------ATLMARHLRERVSREVGITISAGVAPNKFLAKIASDWRKPDGLFVITPPEVAD 172
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ L ++K+ + G++ + L T +++ L F K L+ +A G
Sbjct: 173 FVSELPVEKLFGV-GQVTAARLHALGVKTCGDMQALGADVLIEKF-GKQGYRLFEMAHGR 230
Query: 301 DHEPVNARLVSKSIGCCKRF 320
D+ PV V+KS+ + F
Sbjct: 231 DNRPVVVSRVAKSVSVERTF 250
>gi|242769663|ref|XP_002341815.1| DNA polymerase iota, putative [Talaromyces stipitatus ATCC 10500]
gi|218725011|gb|EED24428.1| DNA polymerase iota, putative [Talaromyces stipitatus ATCC 10500]
Length = 583
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 27/240 (11%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R+I D DCFY V NP+L PLAV Q I+ NYEAR +G+ +
Sbjct: 10 RVIIHFDYDCFYASVLEAENPALKSLPLAVQQKQI-----IVTCNYEARRRGLRKLQLIK 64
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEF--SNIVERASIDEAYIDLTD 121
EAKQ CP++ + + G+ D++K+R+ + + L F + ER DE ++D+T+
Sbjct: 65 EAKQICPDVVI-----ILGE-DLTKFRDVSKSLYCFLKSFLWTQKAERLGFDEVFLDVTE 118
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDED-ARKAGVMEWLGQVYSDTDTS-LMENT 179
++ M + L+++F F D D + + G Y +T S L NT
Sbjct: 119 MIDYNMSLLNR---HDLAHSF---FCLDKRDPAIGFQFDATSYCGLTYPETIGSPLPRNT 172
Query: 180 ED------FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
Q L + + +R+ + ++ + + GI+ +K+LAKLV ++KP Q+ L
Sbjct: 173 AVDGQHNLVQRLILGSHLAHYMRSRLDNEHGYTATVGISTSKLLAKLVGNVNKPNNQTTL 232
>gi|152976551|ref|YP_001376068.1| DNA polymerase IV [Bacillus cytotoxicus NVH 391-98]
gi|152025303|gb|ABS23073.1| DNA-directed DNA polymerase [Bacillus cytotoxicus NVH 391-98]
Length = 412
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDE 64
+I +DM+CF+ VE +PSL GKPLA+ + G I+ +YEAR G+ M+ E
Sbjct: 11 VILHVDMNCFFASVEIAHDPSLKGKPLAIAGNEKERKGIIVTCSYEAREYGIRTTMQLWE 70
Query: 65 AKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
AK+ CP + + + + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 71 AKKLCPHL-------IVKQPNFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYA 123
Query: 125 -----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 124 LGTPIEIAKMIQQTLVTELQLPCSIGIAPN 153
>gi|345868102|ref|ZP_08820098.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
gi|344047584|gb|EGV43212.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
Length = 367
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 143/346 (41%), Gaps = 74/346 (21%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I +DMD FY VE NP L GKPLAV A +YEAR GV M G
Sbjct: 8 RKIIHVDMDAFYASVEQLDNPELQGKPLAVGGGGKRGVVA--AASYEARKFGVRSAMSGM 65
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A++ CP + + +YR +V + + D TD+V
Sbjct: 66 LAQRLCPGL-------IFAPTRFERYREISEQVRKI----------------FFDYTDLV 102
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
P + DE + ++ TE+ +
Sbjct: 103 E-----------------------PLSLDE--------------------AYLDVTENKK 119
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSMLY 242
A +I +EIR + ++ SAGI+ NK +AK+ +KP Q ++ P+ + L
Sbjct: 120 GNPSASLIAQEIRERIFNEVGLTASAGISINKFIAKIASDYNKPNGQKTVNPEDVLPFLE 179
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
A L I+K H GK+ E + L T +L+ +++ L +HF K+ + Y++ RG+
Sbjct: 180 A-LDIRKF-HGVGKVTAEKMYQLGIFTGTDLKSKTIEFLSTHF-GKSGGYYYHVVRGVHT 236
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
V + KS+ + F L++ + +Q +A+EV RL+
Sbjct: 237 SEVKPNRIRKSLAAERTF--SENLSSEIFMLEKLQHIAEEVSRRLK 280
>gi|288803159|ref|ZP_06408594.1| ATP-NAD kinase [Prevotella melaninogenica D18]
gi|288334420|gb|EFC72860.1| ATP-NAD kinase [Prevotella melaninogenica D18]
Length = 366
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 134/320 (41%), Gaps = 76/320 (23%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKG--GGIIAVNYEARHKGVTRHMR 61
R I IDMD F+ VE + NP L GKP+AV + G G + +YEAR GV M
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPELRGKPIAV----GFDGPRGVVSTASYEARPFGVHSAMS 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ + + +Y+ R++ AV E Y DL +
Sbjct: 58 MAQAKRRCPQLIVV-------SSHFDRYKEVSRQIHAVFHE-------------YTDLVE 97
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+ D + ++ +E+
Sbjct: 98 PI----------------------------------------------SLDEAFLDVSEN 111
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQ-SILPQSSVSM 240
+ + +A I +EI+ + +T SAGI++NK+LAK+ + KP ++ P ++
Sbjct: 112 KKGIDLAVDIAKEIKQKIFERTSLTASAGISYNKLLAKIASDMRKPNGIFTVHPDRALDF 171
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ L ++K+ +G K E + + T +L + S + L F K + Y +RGI
Sbjct: 172 I-GKLPVEKLWGVGPKTA-ERMHGMGVFTGEQLREISREHLVQVF-GKMGNVYYNFSRGI 228
Query: 301 DHEPVNARLVSKSIGCCKRF 320
D+ PV KS+GC + F
Sbjct: 229 DNRPVIVSYERKSVGCERTF 248
>gi|116180714|ref|XP_001220206.1| hypothetical protein CHGG_00985 [Chaetomium globosum CBS 148.51]
gi|88185282|gb|EAQ92750.1| hypothetical protein CHGG_00985 [Chaetomium globosum CBS 148.51]
Length = 1141
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 129/313 (41%), Gaps = 50/313 (15%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
T R I +D D F+C V + H VV ++T G I + NY AR GV M
Sbjct: 309 TRRYIMHVDFDSFFCAVSLNRHAPDHRDKPTVVAHSTGSGSEIASCNYPARKFGVKNGMW 368
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ P+I++ VP D Y A + + + +V+ SIDEA +D+TD
Sbjct: 369 MKRAQELYPDIKV--VPY-----DFPAYEEASKLFYDAILDVGGVVQSVSIDEALVDITD 421
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
++ S G VG ++ S+ + E
Sbjct: 422 IILSAAGSSG------------VGI------------------------SEGSIWQEQEK 445
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
E+A +RA + KT H S GI N +LAK+ KP Q + V +
Sbjct: 446 ADEIAT------NLRAEIKRKTDCHVSVGIGGNILLAKVALRKAKPAGQYQVRPEEVLDI 499
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
A L ++ + + +G + +E + + +L + S ++L S KT L+ ARGID
Sbjct: 500 LAPLKVEDLPGVAYSIGGK-LEEIDVKFVSDLRQTSKERLVSILGPKTGEKLWEYARGID 558
Query: 302 HEPVNARLVSKSI 314
V + + KS+
Sbjct: 559 RAEVGEQPIRKSV 571
>gi|387773575|ref|ZP_10128933.1| DNA polymerase IV [Haemophilus parahaemolyticus HK385]
gi|386904924|gb|EIJ69707.1| DNA polymerase IV [Haemophilus parahaemolyticus HK385]
Length = 365
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 123/299 (41%), Gaps = 69/299 (23%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R I IDMDCFY VE + NP L GKP+AV + G + NYEAR G+ M
Sbjct: 13 TRKIIHIDMDCFYAAVEIRENPLLKGKPVAVGGKAN-QRGVLTTCNYEARKFGLHSAMPT 71
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A + CP + L V ++ Y++ ++ + ++ I+E S+DEAY+D+TD
Sbjct: 72 ATALKLCPGLILLPV-------NMPLYKSVSAQIHQIFRRYTQIIEPLSLDEAYLDVTDC 124
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
+ +S + T + EN
Sbjct: 125 -------------------------------------------EQHSGSATWIAEN---- 137
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
IR A+ ++ SAG+A K LAK+ +KP Q ++P V
Sbjct: 138 ------------IRQAIWNELHLTASAGVAPLKFLAKIASDQNKPNGQFVIPPEEVQNFV 185
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
NL +KK+ + GK+ E + + T ++++ S + F K L+ GID
Sbjct: 186 KNLPLKKIPGV-GKVTQEKLAQMGLLTCQDVQQSSQTVIYQEF-GKFGQRLWDFCHGID 242
>gi|339300877|ref|ZP_08650004.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
gi|319745668|gb|EFV97967.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
Length = 369
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 145/360 (40%), Gaps = 80/360 (22%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NPSL GKP+ + GG G+++ NYEAR GV
Sbjct: 15 TSRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSA 74
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR G +E I + Y DL
Sbjct: 75 MSSKEAYERCPQ-------AIFISGNYQKYRQVG-------------MEVRDIFKKYTDL 114
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE + ++ T
Sbjct: 115 VE--------------------------PMSIDE--------------------AYLDVT 128
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSV 238
E+ + A + + I+ + + CSAGI++NK LAKL KP+ + ILP +
Sbjct: 129 ENKMGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQ 188
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCST---MLELEKFSLKQLQSHFEEKTASWLYY 295
L L I+K H GK E + L T +L L + SL + F LY
Sbjct: 189 DFL-KPLPIEKF-HGVGKRSVEKLHALGVYTGEDLLSLSEISLIDMFGRF----GYDLYR 242
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
ARGI+ PV V KSIG K + GK L D+ I + V LE + + K
Sbjct: 243 KARGINASPVKPDRVRKSIGSEKTY-GK-LLYNEADIKAEISKNVQRVVASLEKNKKVGK 300
>gi|398893180|ref|ZP_10645998.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM55]
gi|398184653|gb|EJM72095.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM55]
Length = 353
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 20/130 (15%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I +D DCFY +E + +P L GKPLAV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHVDCDCFYAAIEMRDDPRLAGKPLAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + YR A RE+ + +++ I+E S+DE
Sbjct: 54 GVRSAMSSGHALKLCPDLIIV-------KPRMDAYREASREIHTIFRDYTEIIEPLSLDE 106
Query: 115 AYIDLTDVVH 124
AY+D++D H
Sbjct: 107 AYLDVSDSAH 116
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I ++IR V ++ SAG+A NK LAK+ KP ++ V + L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSGLPVSKL 183
Query: 251 RHLG-------GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+G GKLG C + E +K +L + F E+ L+ +ARGID
Sbjct: 184 HGVGKVTADKLGKLG-----ISDCRQLREWDKLALVREFGSFGER----LWSLARGIDDR 234
Query: 304 PVN 306
V+
Sbjct: 235 VVH 237
>gi|327295310|ref|XP_003232350.1| DNA polymerase iota [Trichophyton rubrum CBS 118892]
gi|326465522|gb|EGD90975.1| DNA polymerase iota [Trichophyton rubrum CBS 118892]
Length = 604
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 32/236 (13%)
Query: 9 IDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQH 68
ID DCFY V NP+L PLAV Q ++ NYEAR +G+ + +AK
Sbjct: 30 IDYDCFYASVFEAENPALKSLPLAVQQKQI-----VVTCNYEARRRGLRKLQLIKDAKMI 84
Query: 69 CPEIELCRVPSVRGKADISKYRNAGREVIAVLSE--FSNIVERASIDEAYIDLTDVVHER 126
CPE+ + V G+ D++K+R+ + + + L+ + N ER DE ++D+T ++
Sbjct: 85 CPEVVI-----VLGE-DLTKFRDVSKGLYSFLNSLIWGNQAERLGFDEVFLDVTSMIDYN 138
Query: 127 MKSIGHIAASQL----SNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMEN---- 178
++ + + + F VGF D + G Y D L
Sbjct: 139 LQWLAPGVRNSFFLLDKDDFTVGFEYDPT----------VYCGPTYPSLDDKLQPGRGSS 188
Query: 179 -TEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSIL 233
++ Q L +A + IR + K + + GI+ +K+L+KL +HKP+ Q+ L
Sbjct: 189 PSDLGQRLILASHLANYIRKQLEEKHGYTSTVGISTSKLLSKLAGNVHKPRNQTTL 244
>gi|421898125|ref|ZP_16328492.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum MolK2]
gi|206589331|emb|CAQ36293.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum MolK2]
Length = 357
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 141/352 (40%), Gaps = 85/352 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHKGVT 57
R I D DCFY +E + +P L G PLAV GG G++A NYEAR G+
Sbjct: 2 RKIIHCDCDCFYAAIEMRDDPRLVGWPLAV-------GGRPEQRGVVATCNYEARKFGIH 54
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M +A + CP++ + +PS + KYR R++ A+ ++ +VE S
Sbjct: 55 SAMPMAQAVKRCPDLVI--LPSA-----MDKYRQVARQIFAIYQSYTPLVEPLS------ 101
Query: 118 DLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 177
L + Y D S M
Sbjct: 102 ----------------------------------------------LDEAYLDVTDSAM- 114
Query: 178 NTEDFQELAIAGV-IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
LA +G I E+IR V + SAG+A NK +AK+ +KP ++
Sbjct: 115 -------LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPE 167
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
V A L ++++ + GK+ + L T +L + +LQ HF L+ +
Sbjct: 168 QVDAFVAALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGTDRLQQHFGS-FGFRLHDL 225
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
RGIDH PV + KS+ + + T L T D + L D++ R+E
Sbjct: 226 CRGIDHRPVQPSQIRKSVSVEETY--ATDLRTLDDCRRELTVLVDQLAARVE 275
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.127 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,675,348,037
Number of Sequences: 23463169
Number of extensions: 665494833
Number of successful extensions: 1945145
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2275
Number of HSP's successfully gapped in prelim test: 8427
Number of HSP's that attempted gapping in prelim test: 1906152
Number of HSP's gapped (non-prelim): 30621
length of query: 1041
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 888
effective length of database: 8,769,330,510
effective search space: 7787165492880
effective search space used: 7787165492880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 82 (36.2 bits)