BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16215
(1041 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y253|POLH_HUMAN DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV=1
Length = 713
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/438 (47%), Positives = 281/438 (64%), Gaps = 18/438 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 360 DRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPL 419
Query: 415 LFLGLSASKFSPLGSHPS 432
L L A+KFS S PS
Sbjct: 420 TMLFLCATKFS--ASAPS 435
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTTSEPPNSTSNISNSSSSSKILNKKS 1005
+A ++ C+KC + + ++ EH DYHFALEL + P+S SN S + ++
Sbjct: 627 LAAEDQVPCEKCGSLVPVWDMPEHMDYHFALELQKSFLQPHS----SNPQVVSAVSHQ-- 680
Query: 1006 SKRGRPSKLNSFKNSENFKKLKTIDQFFKP 1035
KR S L + ++T++ FFKP
Sbjct: 681 GKRNPKSPLACTNKRPRPEGMQTLESFFKP 710
>sp|Q9JJN0|POLH_MOUSE DNA polymerase eta OS=Mus musculus GN=Polh PE=1 SV=1
Length = 694
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/430 (47%), Positives = 282/430 (65%), Gaps = 15/430 (3%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR+M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAYIDLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSYFA-VIERASIDEAYIDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNND----EDARKAGVMEWLGQVYSDTDTSL 175
ER++ + I+A L +T++ G GP + E RK G+++WL + SD TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPRGPTVEETVQKEAIRKQGLLQWLDSLQSDDPTS- 184
Query: 176 MENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQ 235
D + L + +IVEE+RAA+ SKT F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 185 ----PDLR-LTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSH 239
Query: 236 SSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY 295
SV L++ + I+K+R LGGKLG V+E L M +L +F+ QLQSHF EK SWLY
Sbjct: 240 GSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYA 299
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 MCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRNDND 359
Query: 356 RRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLL 415
R A L VS + D +++S R AL Y + + + I N++ ++ +PPL
Sbjct: 360 RVATQLVVSIRFQGDRRLSSLRRCCALPRYDAHKMSQDAFAAIRNCNTSGIQTEWSPPLT 419
Query: 416 FLGLSASKFS 425
L L A+KFS
Sbjct: 420 MLFLCATKFS 429
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 29/140 (20%)
Query: 913 INKGNGNADVSPMDTVDI---INTIADSSTV-DS-AINIADPTK------IICDKCSQPI 961
++ G + V P+ + + +N DS V DS A N + T+ ++C+KC +
Sbjct: 564 VDSGPDDGAVKPVSSKAVSTEMNVAGDSPNVLDSPAYNSQEVTQRATEDQVLCEKCDSLV 623
Query: 962 DINELQEHQDYHFALELS------TTSEPPNSTSNISNSSSSSKILNKKSSKRGRPSKLN 1015
+ ++ EH DYHFALEL TS+P + + K + SSKR RP
Sbjct: 624 PVWDMPEHTDYHFALELQKSFLQPCTSKPQAIPAVSPQGKRNPKSPSASSSKRLRP---- 679
Query: 1016 SFKNSENFKKLKTIDQFFKP 1035
++T++ FFKP
Sbjct: 680 --------HGMQTLESFFKP 691
>sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eso1 PE=1 SV=1
Length = 872
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 186/383 (48%), Gaps = 39/383 (10%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++A ID D FY QVE H PLAV Q+ G+IAVNY AR ++RH
Sbjct: 27 RVVAHIDQDAFYAQVESVRLGLDHSVPLAVQQWQ-----GLIAVNYAARAANISRHETVT 81
Query: 64 EAKQHCPEIELCRVPSVRG----------------KADISKYRNAGREVIAVLSEFSNIV 107
EAK+ CPE+ V + + K + YR+ +++ ++ + + +V
Sbjct: 82 EAKKKCPELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPYRHESVKILNIIKKHAPVV 141
Query: 108 ERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQV 167
++ASIDE +I+LT V + L + ++++ +A V+ W +
Sbjct: 142 KKASIDECFIELTSDVKRIV----------LEEYPYLKIPSEDSNVALPQAPVLLWPAEF 191
Query: 168 YSDTDTSLMENT-EDFQE------LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKL 220
+ +++ T ED++ L A IV+EIR + + ++ CSAG++ N +L+KL
Sbjct: 192 GMVIEEEVVDRTKEDYERDWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKL 251
Query: 221 VCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQ 280
V +KP KQ+IL ++++ +L I +R LGGK G+E++ L ++ ++ S+
Sbjct: 252 VSSRNKPNKQTILTKNAIQDYLVSLKITDIRMLGGKFGEEIINLLGTDSIKDVWNMSMDF 311
Query: 281 LQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELA 340
L + ++ + GID+ + ++ KS+ K F + + + +D +W Q A
Sbjct: 312 LIDKLGQTNGPLVWNLCHGIDNTEITTQVQIKSMLSAKNFSQQK-VKSEEDAINWFQVFA 370
Query: 341 DEVCERLEDDLTLNKRRAQLLTV 363
++ R + + + + LTV
Sbjct: 371 SDLRSRFLELEGMRRPKTICLTV 393
Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 945 NIADPTKIICDKCSQPIDINELQEHQDYHFALELS 979
N AD T C++C Q I ++E EH+DYH AL +S
Sbjct: 532 NSADET-YTCEECEQKITLSERNEHEDYHIALSIS 565
>sp|Q9UNA4|POLI_HUMAN DNA polymerase iota OS=Homo sapiens GN=POLI PE=1 SV=3
Length = 740
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 38/305 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L KPL V Q ++ NYEAR GV + M
Sbjct: 51 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYL-----VVTCNYEARKLGVKKLMN 105
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+++YR +V +L EFS +VER DE ++DLT+
Sbjct: 106 VRDAKEKCPQLVL-----VNGE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTE 159
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + +LS V G VY++ +L++
Sbjct: 160 MVEKRLQ---QLQSDELSAVTVS--------------------GHVYNNQSINLLDVLH- 195
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 196 -IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 254
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K + +E L +++ +L+ FS K L+ A + ++ G
Sbjct: 255 IHSLNHIKEIPGIGYKTA-KCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 313
Query: 301 DHEPV 305
D+ PV
Sbjct: 314 DNSPV 318
>sp|Q6R3M4|POLI_MOUSE DNA polymerase iota OS=Mus musculus GN=Poli PE=1 SV=1
Length = 717
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 196/410 (47%), Gaps = 51/410 (12%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
+SR+I +D+DCFY QVE NP L +PL V Q ++ NYEAR GV + M
Sbjct: 26 SSRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYL-----VVTCNYEARKLGVRKLMN 80
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+ CP++ L V G+ D+S+YR +V +L EFS VER DE ++DLT+
Sbjct: 81 VRDAKEKCPQLVL-----VNGE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTE 134
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
+V +R++ + + ++ + V G VY++ +L
Sbjct: 135 MVEKRLQ---QLPSEEVPSVTV--------------------FGHVYNNQSVNLHNIMH- 170
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI-LPQSSVSM 240
+ L + I E+R A+ ++ AG+A NK+LAKLV G+ KP +Q++ LP+S +
Sbjct: 171 -RRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHL 229
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+++ IK++ +G K +E L +++ +L+ F +K L+ A + ++ G
Sbjct: 230 IHSLNHIKEIPGIGYKTAKR-LEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGE 288
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQL 360
D PV +S F K C ++ + I+EL + R+ D R+
Sbjct: 289 DKSPVTPSGPPQSFSEEDTF--KKC-SSEVEAKAKIEELLSSLLTRVCQD----GRKPHT 341
Query: 361 LTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL 410
+ + + +D N SR + S+ +Q + +S PP+ D+
Sbjct: 342 VRLVIRRYSDKHCNRESRQCPIPSHVIQKL------GTGNHDSMPPLIDI 385
>sp|Q4L7K8|DPO4_STAHJ DNA polymerase IV OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=dinB PE=3 SV=1
Length = 358
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 146/347 (42%), Gaps = 71/347 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD F+ QVE + NP+L GKP+ +V G + +YEAR GV M
Sbjct: 1 MAERRIIHIDMDYFFAQVEMRDNPTLKGKPV-IVGGKASTRGVVSTASYEARKYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP R A YR A ++++ +++IVE S+DEAY+D+T
Sbjct: 60 PMSQAHKLCPNGYYVR-------ARFDAYREASAVIMSIFKSYTDIVEPMSLDEAYLDIT 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
H+ LS + + F
Sbjct: 113 -----------HLVRPDLSASKIATF---------------------------------- 127
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
IR + +T SAG+++NK LAKL G++KP ++ ++V+
Sbjct: 128 --------------IRRDIFEQTGLTSSAGVSYNKFLAKLASGMNKPNGMKVIDYNNVND 173
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ NL I + GK +V+ T +L + +L F K LY ARGI
Sbjct: 174 ILMNLDIGDFPGV-GKASKKVMHNHDIYTGKDLYDKTEFELIRWF-GKRGRGLYLKARGI 231
Query: 301 DHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
DH V A V KS+G + F T + +++ I EL+ + ERL
Sbjct: 232 DHSEVKATRVRKSVGTERTFS--TDVNDDEEILQKIWELSGKTAERL 276
>sp|Q6MA55|DPO4_PARUW DNA polymerase IV OS=Protochlamydia amoebophila (strain UWE25)
GN=dinB PE=3 SV=1
Length = 350
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 138/323 (42%), Gaps = 87/323 (26%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIA-VNYEARHK 54
MT R I IDMD FY VE + +PSL KP+AV GG G+IA NY AR
Sbjct: 1 MTLRKIIHIDMDAFYASVEMRDDPSLVLKPIAV-------GGDPDKRGVIATANYLARKF 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M +AKQ CP++ + P D KY+ + + + F++++E S+DE
Sbjct: 54 GVRSAMPSWKAKQLCPDL-IILFP------DFDKYKRESKAIHEIFHLFTDLIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
A++D+TDV DA + G W+ Q
Sbjct: 107 AFLDVTDV-------------------------------DALR-GSATWIAQ-------- 126
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
EIR + + SAG+A NK LAK+ HKP Q +L
Sbjct: 127 -------------------EIRQLIWKERGLTASAGVAPNKFLAKVASDWHKPNGQFVLT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASW 292
V +L ++K+ +G + ++ + + C +L+ + LQ F + +W
Sbjct: 168 PKEVDAFMVHLPVEKIFGIGHVMAKKLHSLGLMNCG---DLQTLDITTLQKLFGSR--AW 222
Query: 293 -LYYIARGIDHEPVNARLVSKSI 314
LY + RGIDH V + + KS+
Sbjct: 223 NLYELCRGIDHRFVISDRIRKSL 245
>sp|B9DMT3|DPO4_STACT DNA polymerase IV OS=Staphylococcus carnosus (strain TM300) GN=dinB
PE=3 SV=1
Length = 356
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 147/348 (42%), Gaps = 73/348 (20%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIA-VNYEARHKGVTRH 59
M R I IDMD F+ QVE + P L GKP V+ G G+++ +YEAR GV
Sbjct: 1 MGERRIIHIDMDYFFAQVEMRDKPELKGKP--VIVGGKASGRGVVSTASYEARKFGVHSA 58
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M +A + CP+ + Y+ + ++ + ++ IVE S+DEAY+D
Sbjct: 59 MPMAQAHKLCPDGYYV-------QPRFEVYKETSQIIMDIFKSYTEIVEPMSLDEAYLD- 110
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
I H+ LS
Sbjct: 111 ----------ITHLVRPDLS---------------------------------------- 120
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
A I + IR + KT SAGI++NK LAKL G++KP +++ ++V+
Sbjct: 121 --------ASAIAQFIRRDIWEKTGLTSSAGISYNKFLAKLASGMNKPNGITVIHYNNVN 172
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
+ NL I + GK EV+ T +L ++L F K LY ARG
Sbjct: 173 EILMNLDIGDFPGV-GKATKEVMHTNGIYNGQDLYNKDERELIRIF-GKRGHGLYQKARG 230
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
IDH+PV + KS+G + F T + +++ ++EL+++ ERL
Sbjct: 231 IDHKPVKNFRIRKSVGTERTFA--TDINDDEEILLKVRELSEKTAERL 276
>sp|Q8EQ56|DPO4_OCEIH DNA polymerase IV OS=Oceanobacillus iheyensis (strain DSM 14371 /
JCM 11309 / KCTC 3954 / HTE831) GN=dinB PE=3 SV=1
Length = 419
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 10/143 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
RII IDM+CFY VE NPSL GKPLA+ + G I+ +YEAR KGV M
Sbjct: 10 RIIFHIDMNCFYASVEMAHNPSLKGKPLAIAGNPEERKGIIVTSSYEARGKGVKTTMPIW 69
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L R + +YR A RE+ +L+E + V+ SIDE Y+D+TD +
Sbjct: 70 QAKKLCPDLILMR-------PNFDRYRAASREIFKMLAEITPYVQPVSIDEGYMDITDTI 122
Query: 124 HERMKSIGHIAASQLSNTFVVGF 146
+ + + A+QL + G
Sbjct: 123 YAKDPL---VTANQLQQRILSGL 142
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Query: 190 VIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKK 249
V +++ +LS CS GIA NK LAK+ + KP ++L + V L +S+++
Sbjct: 129 VTANQLQQRILSGLDIPCSIGIAPNKFLAKMASDMKKPLGITVLRKREVEKLLWPMSVEE 188
Query: 250 VRHLGGKLGDEVVETLQCSTMLELEK---FSLKQLQSHFEEKTASWLYYIARGIDHEPVN 306
+ +G K + + +++ T+ +L K + LKQL E+ L A GID+ V+
Sbjct: 189 MYGIGEKTAQK-LNSIEIKTIGDLAKKNVYELKQLLGVNGER----LQNRANGIDNRLVD 243
Query: 307 ARLVS--KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
V KSIG + P + T ++ I EL D V R++
Sbjct: 244 PEAVHDFKSIGSSQTLPHDSTDVT--ELMQLIHELVDNVERRVK 285
>sp|B0KTK6|DPO4_PSEPG DNA polymerase IV OS=Pseudomonas putida (strain GB-1) GN=dinB PE=3
SV=1
Length = 354
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 127/312 (40%), Gaps = 81/312 (25%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I +D DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAV-------GGSPDHRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ + +++ ++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLLIV-------KPRFEAYREASREIHGIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q YS + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWYSGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
I E+IR V SAG+A NK LAK+ KP ++
Sbjct: 124 ----------------IAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
+ V A L + ++ H GK+ + + L T LEL ++S L F L+
Sbjct: 168 PAEVEAFVAALPVARL-HGVGKVTADKLTRLGIETCLELREWSRLALVREF-GSFGERLW 225
Query: 295 YIARGIDHEPVN 306
+ARGID V+
Sbjct: 226 GLARGIDERAVH 237
>sp|Q48FB2|DPO4_PSE14 DNA polymerase IV OS=Pseudomonas syringae pv. phaseolicola (strain
1448A / Race 6) GN=dinB PE=3 SV=1
Length = 353
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPELAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMEAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D GH + S
Sbjct: 113 DA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVED 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRGRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 230 GIDDRPVQ 237
>sp|P54545|DPO41_BACSU DNA polymerase IV 1 OS=Bacillus subtilis (strain 168) GN=dinB1 PE=3
SV=2
Length = 414
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 7/119 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
SRII IDM+ FY VE +P+L GKP+AV + G ++ +YEAR +GV M
Sbjct: 5 SRIIFHIDMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
+AK+HCP EL +P + +YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 65 WQAKRHCP--ELIVLP-----PNFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>sp|Q4ZWM4|DPO4_PSEU2 DNA polymerase IV OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=dinB PE=3 SV=1
Length = 354
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 128/308 (41%), Gaps = 73/308 (23%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I ID DCFY +E + P L GKPLAV + + G I NYEAR GV M
Sbjct: 1 MTQRKIIHIDCDCFYAAIEMRDEPDLAGKPLAV-GGSAERRGVIATCNYEARAYGVRSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
A + CP++ + K + Y+ A RE+ + ++++++E S+DEA++D++
Sbjct: 60 SSRHALKLCPDLTIV-------KPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVS 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
+ GH + S
Sbjct: 113 EA--------GHFSGS-------------------------------------------- 120
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A I ++IR V ++ SAG+A NK LAK+ KP ++ V
Sbjct: 121 -------ATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEE 173
Query: 241 LYANLSIKKVRHLGGKLGDEV--VETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298
A+L + K+ +G D++ + + C+ + K +L + F E+ L+ +A
Sbjct: 174 FVASLPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGER----LWSLAH 229
Query: 299 GIDHEPVN 306
GID PV
Sbjct: 230 GIDDRPVQ 237
>sp|Q88NK4|DPO4_PSEPK DNA polymerase IV OS=Pseudomonas putida (strain KT2440) GN=dinB
PE=3 SV=1
Length = 354
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 129/316 (40%), Gaps = 89/316 (28%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I +D DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAV-------GGSPDHRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ + +++ ++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLLIV-------KPRFEAYREASREIHTIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q YS + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWYSGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
I E+IR V SAG+A NK LAK+ KP ++
Sbjct: 124 ----------------IAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEV----VETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+ V A L + ++ +G D++ +ET C + E + +L + F E+
Sbjct: 168 PNEVETFVAALPVARLHGVGKVTADKLTRLGIET--CLHLREWSRLALVREFGSFGER-- 223
Query: 291 SWLYYIARGIDHEPVN 306
L+ +ARGID V+
Sbjct: 224 --LWGLARGIDERAVH 237
>sp|A5VZT3|DPO4_PSEP1 DNA polymerase IV OS=Pseudomonas putida (strain F1 / ATCC 700007)
GN=dinB PE=3 SV=1
Length = 354
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 129/316 (40%), Gaps = 89/316 (28%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I +D DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAV-------GGSPDHRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K YR A RE+ + +++ ++E S+DE
Sbjct: 54 GVRSAMSSRHALKLCPDLLIV-------KPRFEAYREASREIHTIFRDYTELIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D++D Q YS + T
Sbjct: 107 AYLDVSD-------------------------------------------SQWYSGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
I E+IR V SAG+A NK LAK+ KP ++
Sbjct: 124 ----------------IAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEV----VETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+ V A L + ++ +G D++ +ET C + E + +L + F E+
Sbjct: 168 PNEVETFVAALPVARLHGVGKVTADKLTRLGIET--CLHLREWSRLALVREFGSFGER-- 223
Query: 291 SWLYYIARGIDHEPVN 306
L+ +ARGID V+
Sbjct: 224 --LWGLARGIDERAVH 237
>sp|Q1I6D5|DPO4_PSEE4 DNA polymerase IV OS=Pseudomonas entomophila (strain L48) GN=dinB
PE=3 SV=1
Length = 354
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 127/314 (40%), Gaps = 85/314 (27%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
M+ R I ID DCFY +E + +P L G+P+AV GG G+IA NYEAR
Sbjct: 1 MSLRKIIHIDCDCFYAAIEMRDDPRLAGRPMAV-------GGQPGQRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++E+ K YR A R++ + ++++++E S+DE
Sbjct: 54 GVRSAMASGHALKLCPDLEIV-------KPRFEAYREASRDIHTIFRDYTDLIEPLSLDE 106
Query: 115 AYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTS 174
AY+D+TD Q ++ + T
Sbjct: 107 AYLDVTD-------------------------------------------SQWFAGSATR 123
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
+ E+ IR V + SAG+A NK LAK+ KP ++
Sbjct: 124 IAED----------------IRRRVAQQLHITVSAGVAPNKFLAKIASDWRKPNGLFVIT 167
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETL--QCSTMLELEKFSLKQLQSHFEEKTASW 292
V A L + ++ +G D++ C + + + +L + F E+
Sbjct: 168 PDQVEEFVAQLPVARLHGVGKVTADKLARLGIDTCHALRDWPRLALVREFGSFGER---- 223
Query: 293 LYYIARGIDHEPVN 306
L+ +ARGID V
Sbjct: 224 LWGLARGIDERAVQ 237
>sp|A0Q6K9|DPO4_FRATN DNA polymerase IV OS=Francisella tularensis subsp. novicida (strain
U112) GN=dinB PE=3 SV=1
Length = 349
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 131/312 (41%), Gaps = 71/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A A I + + TD V
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAAS----------------AVIRDIFYSFTDKV 100
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDF 182
P + DE Y D TD +N+
Sbjct: 101 E-----------------------PLSLDE-------------AYLDVTDVKEYKNS--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 -----ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQVDSFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L +KK+ + GK+ E ++T+ T L+L++ SL L F K + LY ARGID+
Sbjct: 177 KDLPVKKLFGV-GKVSQEKLKTMNVETCLDLQQLSLATLLDKF-GKFGNNLYSYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KS+
Sbjct: 235 REVNPVRIRKSV 246
>sp|Q8PCW8|DPO4_XANCP DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain
ATCC 33913 / NCPPB 528 / LMG 568) GN=dinB PE=3 SV=1
Length = 359
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 128/305 (41%), Gaps = 74/305 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARTFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ +V D ++Y+ R+V + +++VE S+DEAY+D+T+
Sbjct: 58 AVRAERLCPD-------AVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTE 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
K G M+ ++ T + E T
Sbjct: 111 A----------------------------------KTG-MQLATEIAQLIRTQIREET-- 133
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q A AG+ A NK LAK+ KP Q ++ S V
Sbjct: 134 -QLTASAGI---------------------APNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L L++LQ+HF S LY ARGID
Sbjct: 172 LLPLPVNRIPGV-GKVMDGKLAALGIVTVSDLRLRPLEELQAHFGSFGQS-LYRRARGID 229
Query: 302 HEPVN 306
PV
Sbjct: 230 ERPVE 234
>sp|Q4UQI2|DPO4_XANC8 DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain
8004) GN=dinB PE=3 SV=1
Length = 359
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 128/305 (41%), Gaps = 74/305 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARTFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ +V D ++Y+ R+V + +++VE S+DEAY+D+T+
Sbjct: 58 AVRAERLCPD-------AVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTE 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
K G M+ ++ T + E T
Sbjct: 111 A----------------------------------KTG-MQLATEIAQLIRTQIREET-- 133
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q A AG+ A NK LAK+ KP Q ++ S V
Sbjct: 134 -QLTASAGI---------------------APNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L L++LQ+HF S LY ARGID
Sbjct: 172 LLPLPVNRIPGV-GKVMDGKLAALGIVTVSDLRLRPLEELQAHFGSFGQS-LYRRARGID 229
Query: 302 HEPVN 306
PV
Sbjct: 230 ERPVE 234
>sp|Q2A3L2|DPO4_FRATH DNA polymerase IV OS=Francisella tularensis subsp. holarctica
(strain LVS) GN=dinB PE=3 SV=1
Length = 349
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 131/312 (41%), Gaps = 71/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A A I + + TD V
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAAS----------------AVIRDIFYSFTDKV 100
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDF 182
P + DE Y D TD +N+
Sbjct: 101 E-----------------------PLSLDE-------------AYLDVTDVKEYKNS--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 -----ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQVDSFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L +KK+ + GK+ E ++++ T L+L++ SL L F K S LY ARGID+
Sbjct: 177 KDLPVKKLFGV-GKVSQEKLKSMGVETCLDLQQLSLATLVDKF-GKFGSSLYNYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KS+
Sbjct: 235 REVNPVRIRKSV 246
>sp|A7NC07|DPO4_FRATF DNA polymerase IV OS=Francisella tularensis subsp. holarctica
(strain FTNF002-00 / FTA) GN=dinB PE=3 SV=1
Length = 349
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 131/312 (41%), Gaps = 71/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A A I + + TD V
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAAS----------------AVIRDIFYSFTDKV 100
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDF 182
P + DE Y D TD +N+
Sbjct: 101 E-----------------------PLSLDE-------------AYLDVTDVKEYKNS--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 -----ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQVDSFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L +KK+ + GK+ E ++++ T L+L++ SL L F K S LY ARGID+
Sbjct: 177 KDLPVKKLFGV-GKVSQEKLKSMGVETCLDLQQLSLATLVDKF-GKFGSSLYNYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KS+
Sbjct: 235 REVNPVRIRKSV 246
>sp|Q8PGJ4|DPO4_XANAC DNA polymerase IV OS=Xanthomonas axonopodis pv. citri (strain 306)
GN=dinB PE=3 SV=1
Length = 359
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 128/304 (42%), Gaps = 74/304 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +PSL GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVV----AWRGARSVVCAASYEARIFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D ++Y+ R+V + +++VE S+DEAY+D+T
Sbjct: 58 AVRAERLCPDAIF--VPP-----DFTRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTH 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
K G M+ +V T + E T
Sbjct: 111 A----------------------------------KTG-MQLATEVAQLIRTQIREET-- 133
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q A AG+ A NK LAK+ KP Q ++ S V
Sbjct: 134 -QLTASAGI---------------------APNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L + L++LQ+HF S LY ARGID
Sbjct: 172 LLPLKVNRIPGV-GKVMDGKLAALGIVTVADLRQRPLEELQAHFGSFGQS-LYRRARGID 229
Query: 302 HEPV 305
PV
Sbjct: 230 ERPV 233
>sp|A7Z6F3|DPO4_BACA2 DNA polymerase IV OS=Bacillus amyloliquefaciens (strain FZB42)
GN=dinB PE=3 SV=1
Length = 414
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
RII IDM+ FY VE +PSL GKP+AV + G I+ +YEAR +GV M
Sbjct: 5 GRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKTTMPV 64
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
AK+ CP EL VP + +YR++ +E+ ++L E++++VE SIDE Y+D+TD
Sbjct: 65 WRAKRLCP--ELIVVPP-----NFDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDT 117
Query: 123 VH 124
H
Sbjct: 118 PH 119
>sp|Q3BP42|DPO4_XANC5 DNA polymerase IV OS=Xanthomonas campestris pv. vesicatoria (strain
85-10) GN=dinB PE=3 SV=1
Length = 359
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 127/304 (41%), Gaps = 74/304 (24%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGG--IIAVNYEARHKGVTRHMR 61
R I +DMD FY VE + +P L GKP+ V W+G + A +YEAR G+ M
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPGLRGKPVVV----AWRGARSVVCAASYEARTFGIRSAMP 57
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A++ CP+ VP D ++Y+ R+V + +++VE S+DEAY+D+T
Sbjct: 58 AVRAERLCPDAIF--VPP-----DFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTH 110
Query: 122 VVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 181
K G M+ +V T + E T
Sbjct: 111 A----------------------------------KTG-MQLATEVAQLIRTQIREET-- 133
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
Q A AG+ A NK LAK+ KP Q ++ S V
Sbjct: 134 -QLTASAGI---------------------APNKFLAKIASDWRKPDGQFVIAPSRVDAF 171
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
L + ++ + GK+ D + L T+ +L + L++LQ+HF S LY ARGID
Sbjct: 172 LLPLKVNRIPGV-GKVMDGKLAALGIVTVADLRQRPLEELQAHFGSFGQS-LYRRARGID 229
Query: 302 HEPV 305
PV
Sbjct: 230 ERPV 233
>sp|Q9QUG2|POLK_MOUSE DNA polymerase kappa OS=Mus musculus GN=Polk PE=1 SV=1
Length = 852
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 194/450 (43%), Gaps = 65/450 (14%)
Query: 6 IALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEA 65
I +DMD FY VE + NP L KP+AV + + NY AR GV M G A
Sbjct: 102 IVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSM-----LATSNYHARRFGVRAAMPGFIA 156
Query: 66 KQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 125
K+ CP++ + VP + KYR +EV +L+E+ S+DEAY+++T + E
Sbjct: 157 KRLCPQLII--VP-----PNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQE 209
Query: 126 RMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAG--VMEWLGQV----YSDTDTSLMENT 179
R + + + G + R+ + E+ + + D+ L
Sbjct: 210 RQD------WPEDKRRYFIKMGNYLKIDTPRQEANELTEYERSISPLLFEDSPPDLQPQG 263
Query: 180 EDFQ---------ELAIAGV--------IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVC 222
FQ ++A V +V+EIR + KT SAGIA N +LAK+
Sbjct: 264 SPFQLNSEEQNNPQIAQNSVVFGTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCS 323
Query: 223 GLHKPQKQ-SILPQSSVSM-LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQ 280
+KP Q ILP S M +L I+KV + GK+ ++++ L T EL + +
Sbjct: 324 DKNKPNGQYQILPSRSAVMDFIKDLPIRKVSGI-GKVTEKMLMALGIVTCTEL--YQQRA 380
Query: 281 LQSHFEEKTASWLYY--IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQE 338
L S +T SW Y+ IA G+ + KS+ + F + T + S
Sbjct: 381 LLSLLFSET-SWHYFLHIALGLGSTDLARDGERKSMSVERTFSEIS--KTEEQYS----- 432
Query: 339 LADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVI 398
L E+C L DL + + +T+ + + +V + + ++ A ++I ++ +++
Sbjct: 433 LCQELCAELAHDLQKEGLKGRTVTIKL-KNVNFEVKTRASTVPAAISTAEEIFAIAKELL 491
Query: 399 N---KTNSAPPISDLTPPLLFLGLSASKFS 425
S P+ L +G+ S FS
Sbjct: 492 RTEVNVGSPHPLR-----LRLMGVRMSTFS 516
>sp|B0TZS5|DPO4_FRAP2 DNA polymerase IV OS=Francisella philomiragia subsp. philomiragia
(strain ATCC 25017) GN=dinB PE=3 SV=1
Length = 350
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 130/313 (41%), Gaps = 71/313 (22%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
+R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 4 TRKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPT 62
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A Q CP + L D +KY+ A I + + TD
Sbjct: 63 AIAMQKCPNLILLN-------TDFAKYKATS----------------AVIRDIFYSFTDK 99
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTED 181
V P + DE Y D TD +N+
Sbjct: 100 VE-----------------------PLSLDE-------------AYLDVTDVKEYKNS-- 121
Query: 182 FQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 ------ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQVDSF 175
Query: 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGID 301
+L +KK+ + GK+ E ++ + T L+L++ SL L F K S LY ARGID
Sbjct: 176 VKDLPVKKLFGV-GKVSQEKLKNMNVETCLDLQQLSLATLVDKF-GKFGSSLYNYARGID 233
Query: 302 HEPVNARLVSKSI 314
+ VN + KS+
Sbjct: 234 NREVNPVRIRKSV 246
>sp|Q2YU32|DPO4_STAAB DNA polymerase IV OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=dinB PE=3 SV=1
Length = 328
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 146/357 (40%), Gaps = 91/357 (25%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
MT R I IDMD F+ QVE + NP L GKP+ +V G + +YEAR GV M
Sbjct: 1 MTERRIIHIDMDYFFAQVEMRDNPKLKGKPV-IVGGKASSRGVVSTASYEARKYGVHSAM 59
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP ++ YR +++++ +++ VE S+DEAY+D+T
Sbjct: 60 PMSQAHKLCPNGYFV-------TSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDIT 112
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
++V + AS+++ RK ++ENT
Sbjct: 113 ELVRP------DLPASKIAQYI-------------RK----------------DILENT- 136
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A AGV ++NK LAKL G++KP +++ +V
Sbjct: 137 --HLTASAGV---------------------SYNKFLAKLASGMNKPYGMTVIDYQNVHD 173
Query: 241 LYANLSI----------KKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTA 290
+ L I KKV H G + E +F L +L K
Sbjct: 174 ILMTLDIGDFPGVGKASKKVMHDNG--------IFNGRDLYEKTEFELIRLFG----KRG 221
Query: 291 SWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERL 347
LY ARGIDH V + V KS+G + F T + +++ + EL+ + ERL
Sbjct: 222 RGLYNKARGIDHSEVKSSRVRKSVGTERTFA--TDVNDDEEILRKVWELSGKTAERL 276
>sp|Q0BM23|DPO4_FRATO DNA polymerase IV OS=Francisella tularensis subsp. holarctica
(strain OSU18) GN=dinB PE=3 SV=1
Length = 349
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 131/312 (41%), Gaps = 71/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A A I + + TD V
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAAS----------------AVIRDIFYYFTDKV 100
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDF 182
P + DE Y D TD +N+
Sbjct: 101 E-----------------------PLSLDE-------------AYLDVTDVKEYKNS--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 -----ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQVDSFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L +KK+ + GK+ E ++++ T L+L++ SL L F K S LY ARGID+
Sbjct: 177 KDLPVKKLFGV-GKVSQEKLKSMGVETCLDLQQLSLATLVDKF-GKFGSSLYNYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KS+
Sbjct: 235 REVNPVRIRKSV 246
>sp|B2SH34|DPO4_FRATM DNA polymerase IV OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=dinB PE=3 SV=1
Length = 349
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 130/312 (41%), Gaps = 71/312 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMD F+ QVE K NPSL KP AV N K G I NY AR GV M
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNP-KRGVISTCNYIAREYGVRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP + L D +KY+ A A I + + TD V
Sbjct: 64 IAMQKCPNLILLN-------TDFAKYKAAS----------------AVIRDIFYSFTDKV 100
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSD-TDTSLMENTEDF 182
P + DE Y D TD +N+
Sbjct: 101 E-----------------------PLSLDE-------------AYLDVTDVKEYKNS--- 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
A +I + I+ + +KT SAG+A NK+LAK+ ++KP ++ V
Sbjct: 122 -----ATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQVDSFV 176
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
+L +KK+ + GK+ E +++ T L+L++ SL L F K S LY ARGID+
Sbjct: 177 KDLPVKKLFGV-GKVSQEKLKSTGVETCLDLQQLSLATLVDKF-GKFGSSLYNYARGIDN 234
Query: 303 EPVNARLVSKSI 314
VN + KS+
Sbjct: 235 REVNPVRIRKSV 246
>sp|Q818U9|DPO4_BACCR DNA polymerase IV OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=dinB PE=3 SV=1
Length = 415
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE +PSL GKPLAV + G II +YEAR G+ M
Sbjct: 12 GRVILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 71
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 72 WEAKRLCPQL-VVRRP------NFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDC 124
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 125 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 156
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I + I+ A+L++ Q CS GIA N LAK + KP ++L + + + LS++ +
Sbjct: 133 IAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDIPEMIWPLSVEAM 192
Query: 251 RHLGGKLGDEVVE 263
+G K +++ E
Sbjct: 193 HGIGEKTAEKLNE 205
>sp|B0BPX9|DPO4_ACTPJ DNA polymerase IV OS=Actinobacillus pleuropneumoniae serotype 3
(strain JL03) GN=dinB PE=3 SV=1
Length = 356
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 171/413 (41%), Gaps = 97/413 (23%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHM 60
T R I IDMDCFY +E + NP+L GKP+AV + +G G++ NYEAR G+ M
Sbjct: 3 TQRKIIHIDMDCFYAAIEMRENPALIGKPVAV--GGSVEGRGVLTTCNYEARKFGLHSAM 60
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + L VP ++ Y+ ++ + +++IVE S+DEAY+D+T
Sbjct: 61 PTAQALKRCPNLIL--VP-----VNMPLYKAVSEQIHQIFRRYTDIVEPLSLDEAYLDVT 113
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D Q S G W+ Q
Sbjct: 114 D-------------CRQCS-------------------GSATWIAQ-------------- 127
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
EIR A+ ++ SAGIA K LAK+V +KP Q ++ +++
Sbjct: 128 -------------EIRDAIWNELHLTASAGIAPLKFLAKIVSDQNKPNGQFVISPENMTA 174
Query: 241 LYANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+L +KK+ + GK+ +E + L C + +K + + F ++ L+ +
Sbjct: 175 FIYDLPLKKIPGV-GKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQR----LWEFS 229
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTC-LATRQDVSHWIQELADEVCERLEDDLT---- 352
ID+ + A KS+ P LA + + + EL ++ RL+ +
Sbjct: 230 HAIDNRKIEANRPRKSLAVENTLPTDIWHLAEAEQI---VDELFKKLVFRLQRNWGERSL 286
Query: 353 --LNKRRAQLLTVSFTQET-DGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
K +L FTQ T + + SR + +E+ QV +TN
Sbjct: 287 QEFKKLAIKLKFGDFTQTTLERTTDGLSR---------ERFIELLQQVWQRTN 330
>sp|A4YEC1|DPO4_METS5 DNA polymerase IV OS=Metallosphaera sedula (strain ATCC 51363 / DSM
5348) GN=dbh PE=3 SV=1
Length = 349
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 132/306 (43%), Gaps = 70/306 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYN--TWKGGGIIAVNYEARHKGVTRHMRG 62
I+ +D D F+ QVE LNPSL GKP+ V Y+ T G + NYEAR G+ M
Sbjct: 2 IVLFVDFDYFFAQVEEILNPSLKGKPVVVCVYSGRTKDSGAVATSNYEARKLGIKAGMPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
+AK+ + +R + Y+ R V+ ++S + + +E ASIDEAY+D+T
Sbjct: 62 IKAKEIGKDAVFL---PMRKEV----YQQVSRRVMNIISGYGDKLEIASIDEAYLDIT-- 112
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
R+K D E ARK
Sbjct: 113 --RRVKDF------------------DEAKELARK------------------------- 127
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
++A VL K + + GI NKV+AK++ ++KP I+ V
Sbjct: 128 ------------LKAEVLEKERLRVTVGIGPNKVVAKIIADMNKPDGLGIIYPEEVKDFL 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
NL I KV + GK+ +E++ + + + ++ S +L + + A++L +A H
Sbjct: 176 YNLDISKVPGV-GKITEEILRKVGINRLGDVINKS-GELVNLVGKSKANYLLSLANNTYH 233
Query: 303 EPVNAR 308
+PV +R
Sbjct: 234 DPVESR 239
>sp|A3N148|DPO4_ACTP2 DNA polymerase IV OS=Actinobacillus pleuropneumoniae serotype 5b
(strain L20) GN=dinB PE=3 SV=1
Length = 356
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 103/413 (24%), Positives = 170/413 (41%), Gaps = 97/413 (23%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAV-NYEARHKGVTRHM 60
T R I IDMDCFY +E + NP+L GKP+AV + +G G++ NYEAR G+ M
Sbjct: 3 TQRKIIHIDMDCFYAAIEMRENPALIGKPVAV--GGSVEGRGVLTTCNYEARKFGLHSAM 60
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+A + CP + L VP ++ Y+ ++ + +++IVE S+DEAY+D+T
Sbjct: 61 PTAQALKRCPNLIL--VP-----VNMPLYKAVSEQIHQIFRRYTDIVELLSLDEAYLDVT 113
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D Q S G W+ Q
Sbjct: 114 D-------------CRQCS-------------------GSATWIAQ-------------- 127
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
EIR A+ ++ SAGIA K LAK+ +KP Q ++ +++
Sbjct: 128 -------------EIRDAIWNELHLTASAGIAPLKFLAKIASDQNKPNGQFVISPENMTA 174
Query: 241 LYANLSIKKVRHLGGKLGDEVVETL---QCSTMLELEKFSLKQLQSHFEEKTASWLYYIA 297
+L +KK+ + GK+ +E + L C + +K + + F ++ L+ +
Sbjct: 175 FIYDLPLKKIPRV-GKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQR----LWEFS 229
Query: 298 RGIDHEPVNARLVSKSIGCCKRFPGKTC-LATRQDVSHWIQELADEVCERLEDDLT---- 352
ID+ + A KS+ P LA + + + EL ++ RL+ +
Sbjct: 230 HAIDNRKIEANRPRKSLAVENTLPTDIWHLAEAEQI---VDELFKKLVFRLQRNWGERSL 286
Query: 353 --LNKRRAQLLTVSFTQET-DGKVNSCSRSIALASYKLQDIVEVSMQVINKTN 402
K +L FTQ T + + SR + +E+ QV +TN
Sbjct: 287 QEFKKLAIKLKFGDFTQTTLERTTDGLSR---------ERFIELLQQVWQRTN 330
>sp|Q3KH18|DPO4_PSEPF DNA polymerase IV OS=Pseudomonas fluorescens (strain Pf0-1) GN=dinB
PE=3 SV=1
Length = 353
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 20/130 (15%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHK 54
MT R I +D DCFY +E + +PSL GKPLAV GG G+IA NYEAR
Sbjct: 1 MTQRKIIHVDCDCFYAAIEMRDDPSLAGKPLAV-------GGSADRRGVIATCNYEARAY 53
Query: 55 GVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDE 114
GV M A + CP++ + K + YR A +E+ + S++++++E S+DE
Sbjct: 54 GVRSAMSSGHALKLCPDLTIV-------KPRMDAYREASKEIHTIFSDYTDLIEPLSLDE 106
Query: 115 AYIDLTDVVH 124
AY+D++D H
Sbjct: 107 AYLDVSDSAH 116
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I ++IR V ++ SAG+A NK LAK+ KP ++ V + L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWRKPNGLFVITPDQVEEFVSGLPVSKL 183
Query: 251 RHLG-------GKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+G GKLG C + E +K +L + F E+ L+ +ARGID
Sbjct: 184 HGVGKVTADKLGKLGIN-----DCLQLREWDKLALVREFGSFGER----LWSLARGIDER 234
Query: 304 PVN 306
V+
Sbjct: 235 LVH 237
>sp|Q98JM5|DPO42_RHILO DNA polymerase IV 2 OS=Rhizobium loti (strain MAFF303099) GN=dinB2
PE=3 SV=1
Length = 415
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 13/115 (11%)
Query: 10 DMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHC 69
D+D FY VE L+PSL GKP+AV GG ++A +YEAR GV M G +A++ C
Sbjct: 11 DLDAFYASVEQLLDPSLRGKPIAV------GGGVVLAASYEARAFGVRGGMPGRKARELC 64
Query: 70 PEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 124
P++ + S Y+ G I VL +F+ +VER SIDEA+ D+ H
Sbjct: 65 PQLIFV-------GGNFSHYQRLGDAAIKVLDDFTPVVERISIDEAFADVAGCTH 112
>sp|Q974T8|DPO4_SULTO DNA polymerase IV OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=dbh PE=3 SV=2
Length = 351
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 123/303 (40%), Gaps = 69/303 (22%)
Query: 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW--KGGGIIAVNYEARHKGVTRHMRG 62
II +D D F+ QVE LNP GKPL V Y+ K G + NYEAR GV M
Sbjct: 2 IILFVDFDYFFAQVEEVLNPQYKGKPLIVCVYSGRNEKSGAVATANYEARKLGVKAGMPI 61
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
A + P VP + Y +++++S +S+ +E ASIDEAYID+T
Sbjct: 62 SRAMELAPN--AIFVPMHK-----EVYTEVSNRIMSIISSYSDKIEIASIDEAYIDIT-- 112
Query: 123 VHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF 182
S ++N E+
Sbjct: 113 ---------------------------------------------------SKVKNFEEA 121
Query: 183 QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242
EL ++++ ++ K + + GIA NKV AK++ KP ++ +
Sbjct: 122 IELG------KKLKREIMEKEKITVTVGIAPNKVFAKIIADRVKPNGLGVVKPEEIEEFI 175
Query: 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDH 302
++ I +V +G + E + +L + ++++ S +L+ E A +LY +A
Sbjct: 176 KSIDIDEVPGVGNVI-SERLHSLGVNKLIDILSVSFDKLKEEIGEAKAFYLYRLATNSYF 234
Query: 303 EPV 305
EPV
Sbjct: 235 EPV 237
>sp|Q64X95|DPO4_BACFR DNA polymerase IV OS=Bacteroides fragilis (strain YCH46) GN=dinB
PE=3 SV=1
Length = 364
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 151/352 (42%), Gaps = 80/352 (22%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I IDMD FY VE + +P L GKPLAV + G + A +YEAR GV M
Sbjct: 1 MNERKIIHIDMDAFYASVEQRDHPELRGKPLAVGHAE--ERGVVAAASYEARRYGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
+AK+ CP +L VP G+ ++ Y++ R+V + E+++++E S+DEA++D+T
Sbjct: 59 SSQKAKRLCP--QLIFVP---GRMEV--YKSVSRQVHEIFHEYTDLIEPLSLDEAFLDVT 111
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT- 179
+ K G++ + D ++ +
Sbjct: 112 E----------------------------------NKQGIL-----LAVDIAKAIKQRIR 132
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
E+ +A AGV + A + S F G+ C +H Q + + +
Sbjct: 133 EELSLVASAGVSYNKFLAKIAS--DFRKPDGL----------CTIHPDQAIDFIARLPIE 180
Query: 240 MLY--ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYY-I 296
+ ++ +K+ LG G ++ E CS+ + + +F LYY
Sbjct: 181 SFWGVGPVTARKMHLLGIHNGLQLRE---CSSEMLVRQFG-----------KVGLLYYDF 226
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLE 348
ARG+D PV A + KSIGC + + R V + +A E+ ERL+
Sbjct: 227 ARGVDLRPVEAVRIRKSIGCEHTL--EKDIHVRSSVIIELYHVATELVERLQ 276
>sp|Q635E0|DPO4_BACCZ DNA polymerase IV OS=Bacillus cereus (strain ZK / E33L) GN=dinB
PE=3 SV=1
Length = 415
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 12 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 71
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 72 WEAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 124
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 125 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 156
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I + I+ A+L++ Q CS GIA N LAK + KP ++L + + + L + +
Sbjct: 133 IAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDIPEMIWPLPVGAM 192
Query: 251 RHLGGKLGDEV 261
+G K +++
Sbjct: 193 HGIGEKTAEKL 203
>sp|Q81M86|DPO4_BACAN DNA polymerase IV OS=Bacillus anthracis GN=dinB PE=3 SV=1
Length = 412
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRG 62
R+I +DM+CF+ VE + SL GKPLAV + G II +YEAR G+ M
Sbjct: 9 GRVILHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPL 68
Query: 63 DEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 122
EAK+ CP++ + R P + + YR A ++ +LS F+ ++ SIDE Y+D+TD
Sbjct: 69 WEAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITDC 121
Query: 123 VH-----ERMKSIGHIAASQLSNTFVVGFGPD 149
E K I ++L +G P+
Sbjct: 122 YALGSPLEIAKMIQQALLTELQLPCSIGIAPN 153
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 191 IVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKV 250
I + I+ A+L++ Q CS GIA N LAK + KP ++L + + + L + +
Sbjct: 130 IAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDIPEMIWPLPVGAM 189
Query: 251 RHLGGKLGDEV 261
+G K +++
Sbjct: 190 HGIGEKTAEKL 200
>sp|A1U339|DPO4_MARAV DNA polymerase IV OS=Marinobacter aquaeolei (strain ATCC 700491 /
DSM 11845 / VT8) GN=dinB PE=3 SV=1
Length = 353
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 127/320 (39%), Gaps = 70/320 (21%)
Query: 1 MTSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHM 60
M R I +D DCFY VE + +PSL PLAV + NY AR GV M
Sbjct: 1 MAQRKIIHVDCDCFYAAVEMRDDPSLRDVPLAVGGEGGRGV--VTTCNYRARAFGVRSAM 58
Query: 61 RGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLT 120
G EA++ CP L VP D+ +YR ++V+A+L E +++VE S+DEA++
Sbjct: 59 PGSEARRLCPG--LVTVPP-----DMGRYRAVSQQVMAILREMTDLVEPLSLDEAFL--- 108
Query: 121 DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 180
D D DA K
Sbjct: 109 ----------------------------DVTDVDAFKGS--------------------- 119
Query: 181 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240
A ++ +R V + SAG+A NK LAK+ KP ++ V+
Sbjct: 120 -------ATLMARHLRERVSREVGITISAGVAPNKFLAKIASDWRKPDGLFVITPPEVAD 172
Query: 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300
+ L ++K+ + G++ + L T +++ L F K L+ +A G
Sbjct: 173 FVSELPVEKLFGV-GQVTAARLHALGVKTCGDMQALGADVLIEKF-GKQGYRLFEMAHGR 230
Query: 301 DHEPVNARLVSKSIGCCKRF 320
D+ PV V+KS+ + F
Sbjct: 231 DNRPVVVSRVAKSVSVERTF 250
>sp|Q8DXW9|DPO4_STRA5 DNA polymerase IV OS=Streptococcus agalactiae serotype V (strain
ATCC BAA-611 / 2603 V/R) GN=dinB PE=3 SV=1
Length = 364
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 145/360 (40%), Gaps = 80/360 (22%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NPSL GKP+ + GG G+++ NYEAR GV
Sbjct: 10 TSRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR G +E I + Y DL
Sbjct: 70 MSSKEAYERCPQ-------AIFISGNYQKYRQVG-------------MEVRDIFKKYTDL 109
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE + ++ T
Sbjct: 110 VE--------------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSV 238
E+ + A + + I+ + + CSAGI++NK LAKL KP+ + ILP +
Sbjct: 124 ENKMGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQ 183
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCST---MLELEKFSLKQLQSHFEEKTASWLYY 295
L L I+K H GK E + L T +L L + SL + F LY
Sbjct: 184 DFL-KPLPIEKF-HGVGKRSVEKLHALGVYTGEDLLSLSEISLIDMFGRF----GYDLYR 237
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
ARGI+ PV V KSIG K + GK L D+ I + V LE + + K
Sbjct: 238 KARGINASPVKPDRVRKSIGSEKTY-GK-LLYNEADIKAEISKNVQRVVASLEKNKKVGK 295
>sp|Q8E3I8|DPO4_STRA3 DNA polymerase IV OS=Streptococcus agalactiae serotype III (strain
NEM316) GN=dinB PE=3 SV=1
Length = 364
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 145/360 (40%), Gaps = 80/360 (22%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NPSL GKP+ + GG G+++ NYEAR GV
Sbjct: 10 TSRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR G +E I + Y DL
Sbjct: 70 MSSKEAYERCPQ-------AIFISGNYQKYRQVG-------------MEVRDIFKKYTDL 109
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE + ++ T
Sbjct: 110 VE--------------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSV 238
E+ + A + + I+ + + CSAGI++NK LAKL KP+ + ILP +
Sbjct: 124 ENKMGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQ 183
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCST---MLELEKFSLKQLQSHFEEKTASWLYY 295
L L I+K H GK E + L T +L L + SL + F LY
Sbjct: 184 DFL-KPLPIEKF-HGVGKRSVEKLHALGVYTGEDLLSLSEISLIDMFGRF----GYDLYR 237
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
ARGI+ PV V KSIG K + GK L D+ I + V LE + + K
Sbjct: 238 KARGINASPVKPDRVRKSIGSEKTY-GK-LLYNEADIKAEISKNVQRVVASLEKNKKVGK 295
>sp|Q3JZG9|DPO4_STRA1 DNA polymerase IV OS=Streptococcus agalactiae serotype Ia (strain
ATCC 27591 / A909 / CDC SS700) GN=dinB PE=3 SV=1
Length = 364
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 145/360 (40%), Gaps = 80/360 (22%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NPSL GKP+ + GG G+++ NYEAR GV
Sbjct: 10 TSRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR G +E I + Y DL
Sbjct: 70 MSSKEAYERCPQ-------AIFISGNYQKYRQVG-------------MEVRDIFKKYTDL 109
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
+ P + DE + ++ T
Sbjct: 110 VE--------------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS-ILPQSSV 238
E+ + A + + I+ + + CSAGI++NK LAKL KP+ + ILP +
Sbjct: 124 ENKMGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQ 183
Query: 239 SMLYANLSIKKVRHLGGKLGDEVVETLQCST---MLELEKFSLKQLQSHFEEKTASWLYY 295
L L I+K H GK E + L T +L L + SL + F LY
Sbjct: 184 DFL-KPLPIEKF-HGVGKRSVEKLHALGVYTGEDLLSLSEISLIDMFGRF----GYDLYR 237
Query: 296 IARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
ARGI+ PV V KSIG K + GK L D+ I + V LE + + K
Sbjct: 238 KARGINASPVKPDRVRKSIGSEKTY-GK-LLYNEADIKAEISKNVQRVVASLEKNKKVGK 295
>sp|Q5ZY20|DPO4_LEGPH DNA polymerase IV OS=Legionella pneumophila subsp. pneumophila
(strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=dinB
PE=3 SV=1
Length = 355
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 7/166 (4%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D + ++ TE Q A I EEIRA + Q SAGIA NK LAK+ HKP Q
Sbjct: 106 DEAYLDVTESTQCQGSATWIAEEIRARIYQARQLTASAGIAPNKSLAKIASDWHKPNGQM 165
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
++ VS +L ++K+ +G K+ +E + L T +L+++S++ L F
Sbjct: 166 VIRPEDVSAFVLDLPVRKLFGVGPKM-EEKLRALNIKTCADLQRYSIEYLLQKF-GTMGQ 223
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFP-----GKTCLATRQDV 332
LY +ARGID+ PVN + KSI + +P + CLA D+
Sbjct: 224 RLYELARGIDNRPVNPERIRKSISVEETYPKDLPNSEACLAVLPDL 269
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMDCFY +E + P L KP+A V + + G I NY AR G+ M
Sbjct: 5 RKIIHIDMDCFYAAIEMRDFPELANKPIA-VGGDAKRRGVIATCNYAARQFGIRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A + C E+ L V + D+ Y+ + + ++L+E+++++E S+DEAY+D+T+
Sbjct: 64 HALKLCRELILRPV-----RMDV--YQKESQYIRSLLTEYTDLIEPLSLDEAYLDVTE 114
>sp|Q1JF59|DPO4_STRPD DNA polymerase IV OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=dinB PE=3 SV=1
Length = 364
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 142/356 (39%), Gaps = 72/356 (20%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NP+L GKP+ + + GG G+++ NYEAR G+
Sbjct: 10 TSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR G ++ + +
Sbjct: 70 MSSKEAYERCPK-------AIFISGNYEKYRTVGDQIRRIFKRY---------------- 106
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
TDVV P + DE + ++ T
Sbjct: 107 TDVVE-----------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
++ + A I + I+ + + CSAG+++NK LAKL KP +++ +
Sbjct: 124 DNKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDAL 183
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
A L I+K H GK E + + T +L L HF + LY ARG
Sbjct: 184 CFLAKLPIEKF-HGVGKKSVEKLHDMGIYTGQDLLAVPEMTLIDHF-GRFGFDLYRKARG 241
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK 355
I + PV + + KSIG + + L D+ I + A V L+D L K
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA--KLLYQETDIKAEISKNAKRVAALLQDHKKLGK 295
>sp|Q086K1|DPO4_SHEFN DNA polymerase IV OS=Shewanella frigidimarina (strain NCIMB 400)
GN=dinB PE=3 SV=1
Length = 359
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 156/374 (41%), Gaps = 84/374 (22%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMDC++ VE + P L GKP+AV + +G I +YEAR GV M
Sbjct: 2 RKIIHIDMDCYFAAVEMRDFPELRGKPIAVGGRSDRRGV-ISTCSYEARKFGVRSAMSSY 60
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
A Q CP++ L VP G+ ++ Y++ ++ + ++++VE S+DEAY+
Sbjct: 61 HALQLCPQLIL--VP---GRMEV--YKSVSLQIREIFHRYTDLVEPLSLDEAYL------ 107
Query: 124 HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 183
D D DA +
Sbjct: 108 -------------------------DVTDCDAHQGS------------------------ 118
Query: 184 ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYA 243
A +I + IR + T SAGIA K LAK+ L+KP Q ++ + ++
Sbjct: 119 ----ATLIAKTIRDEIFEVTGLTASAGIAPIKFLAKIASDLNKPNGQYVITPNQIADFVK 174
Query: 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHE 303
+L + K+ + GK+ + + + +T +++++ QL F K L A+GID
Sbjct: 175 DLPLSKIPGV-GKVTSKKLADIGLTTCYDVQQYPKVQLIEAF-GKFGHVLAERAQGIDSR 232
Query: 304 PVNARLVSKSIGCCKRFPGKTCLA--------TRQDVSHWIQELADEVCERLEDDLTLNK 355
++ V KS+G +T LA Q + IQEL+ V R D ++K
Sbjct: 233 QISPHRVRKSVGV------ETTLAKDIFTLEQCHQVLPQLIQELSTRV-RRSAKDRQIHK 285
Query: 356 RRAQLLTVSFTQET 369
+ +L F Q T
Sbjct: 286 QVVKLKFNDFKQTT 299
>sp|P0DA79|DPO4_STRPQ DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=dinB PE=3 SV=1
Length = 365
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 148/371 (39%), Gaps = 78/371 (21%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NP+L GKP+ + + GG G+++ NYEAR G+
Sbjct: 10 TSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR G ++ + +
Sbjct: 70 MSSKEAYERCPK-------AIFISGNYEKYRTVGDQIRRIFKRY---------------- 106
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
TDVV P + DE + ++ T
Sbjct: 107 TDVVE-----------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
++ + A I + I+ + + CSAG+++NK LAKL KP +++ +
Sbjct: 124 DNKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDAL 183
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
A L I+K H GK E + + T +L L HF + LY ARG
Sbjct: 184 CFLAKLPIEKF-HGVGKKSVEKLHDMGIYTGQDLLAVPEMTLIDHF-GRFGFDLYRKARG 241
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK---- 355
I + PV + + KSIG + + L D+ I + A V L+D L K
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA--KLLYQETDIKAEISKNAKRVVALLQDHKKLGKTIVL 299
Query: 356 --RRAQLLTVS 364
R A +T++
Sbjct: 300 KVRYADFITLT 310
>sp|P0DA78|DPO4_STRP3 DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=dinB PE=3 SV=1
Length = 365
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 148/371 (39%), Gaps = 78/371 (21%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-GIIAV-NYEARHKGVTRH 59
TSR I IDMD F+ VE + NP+L GKP+ + + GG G+++ NYEAR G+
Sbjct: 10 TSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHSA 69
Query: 60 MRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDL 119
M EA + CP+ ++ + KYR G ++ + +
Sbjct: 70 MSSKEAYERCPK-------AIFISGNYEKYRTVGDQIRRIFKRY---------------- 106
Query: 120 TDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT 179
TDVV P + DE + ++ T
Sbjct: 107 TDVVE-----------------------PMSIDE--------------------AYLDVT 123
Query: 180 EDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS 239
++ + A I + I+ + + CSAG+++NK LAKL KP +++ +
Sbjct: 124 DNKLGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDAL 183
Query: 240 MLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARG 299
A L I+K H GK E + + T +L L HF + LY ARG
Sbjct: 184 CFLAKLPIEKF-HGVGKKSVEKLHDMGIYTGQDLLAVPEMTLIDHF-GRFGFDLYRKARG 241
Query: 300 IDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNK---- 355
I + PV + + KSIG + + L D+ I + A V L+D L K
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA--KLLYQETDIKAEISKNAKRVVALLQDHKKLGKTIVL 299
Query: 356 --RRAQLLTVS 364
R A +T++
Sbjct: 300 KVRYADFITLT 310
>sp|Q5WYY8|DPO4_LEGPL DNA polymerase IV OS=Legionella pneumophila (strain Lens) GN=dinB
PE=3 SV=1
Length = 355
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 7/166 (4%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D + ++ TE Q A I EEIRA + Q SAGIA NK LAK+ HKP Q
Sbjct: 106 DEAYLDVTESTQCQGSATWIAEEIRARIYQTRQLTASAGIAPNKSLAKIASDWHKPNGQM 165
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
++ VS +L ++K+ +G K+ +E + L T +L+++S++ L F
Sbjct: 166 VIRPEDVSAFVLDLPVRKLFGVGPKM-EEKLGALNIKTCADLQRYSIEYLLQKF-GTMGQ 223
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFP-----GKTCLATRQDV 332
LY +ARGID+ PVN + KSI + +P + CLA D+
Sbjct: 224 RLYELARGIDNRPVNPERIRKSISVEETYPKDLPNSEACLAVLPDL 269
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 20/124 (16%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGG-----GIIAV-NYEARHKGVT 57
R I IDMDCFY +E + P L KP+AV GG G+IA NY AR G+
Sbjct: 5 RKIIHIDMDCFYAAIEMRDFPELANKPIAV-------GGDAKHRGVIATCNYAARQFGIR 57
Query: 58 RHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYI 117
M A + C E+ L V + D+ Y+ + + ++L+E+++++E S+DEAY+
Sbjct: 58 SAMPTAHALKLCRELILRPV-----RMDV--YQKESQYIRSLLTEYTDLIEPLSLDEAYL 110
Query: 118 DLTD 121
D+T+
Sbjct: 111 DVTE 114
>sp|Q5X7J1|DPO4_LEGPA DNA polymerase IV OS=Legionella pneumophila (strain Paris) GN=dinB
PE=3 SV=1
Length = 355
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 7/166 (4%)
Query: 172 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231
D + ++ TE Q A I EEIRA + Q SAGIA NK LAK+ HKP Q
Sbjct: 106 DEAYLDVTESTQCQGSATWIAEEIRARIYQTRQLTASAGIAPNKSLAKIASDWHKPNGQM 165
Query: 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTAS 291
++ VS +L ++K+ +G K+ +E + L T +L+++S++ L F
Sbjct: 166 VIRPEDVSAFVLDLPVRKLFGVGPKM-EEKLGALNIKTCADLQRYSVEYLLQKF-GTMGQ 223
Query: 292 WLYYIARGIDHEPVNARLVSKSIGCCKRFP-----GKTCLATRQDV 332
LY +ARGID+ PVN + KSI + +P + CLA D+
Sbjct: 224 RLYELARGIDNRPVNPERIRKSISVEETYPKDLPNSEACLAVLPDL 269
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R I IDMDCFY +E + P L KP+A V + + G I NY AR G+ M
Sbjct: 5 RKIIHIDMDCFYAAIEMRDFPELANKPIA-VGGDAKRRGVIATCNYAARQFGIRSAMPTA 63
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
A + C E+ L V + D+ Y+ + + ++L+E++++VE S+DEAY+D+T+
Sbjct: 64 HALKLCRELILRPV-----RMDV--YQKESQYIRSLLTEYTDLVEPLSLDEAYLDVTE 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,667,863
Number of Sequences: 539616
Number of extensions: 16350828
Number of successful extensions: 51541
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 647
Number of HSP's that attempted gapping in prelim test: 48347
Number of HSP's gapped (non-prelim): 2975
length of query: 1041
length of database: 191,569,459
effective HSP length: 128
effective length of query: 913
effective length of database: 122,498,611
effective search space: 111841231843
effective search space used: 111841231843
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)