Query psy16215
Match_columns 1041
No_of_seqs 288 out of 1612
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 23:47:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ecq_A DNA polymerase ETA; tra 100.0 6.1E-79 2.1E-83 699.5 40.5 417 2-426 8-434 (435)
2 3osn_A DNA polymerase IOTA; ho 100.0 7.3E-73 2.5E-77 646.7 43.9 379 2-428 26-417 (420)
3 1jx4_A DNA polymerase IV (fami 100.0 1.9E-73 6.4E-78 636.4 36.1 347 4-438 1-351 (352)
4 4dez_A POL IV 1, DNA polymeras 100.0 1.8E-74 6E-79 645.5 27.2 343 3-428 2-347 (356)
5 3bq0_A POL IV, DBH, DNA polyme 100.0 1.7E-72 5.9E-77 629.1 36.9 347 4-438 1-353 (354)
6 4f4y_A POL IV, DNA polymerase 100.0 2.2E-72 7.6E-77 631.4 36.9 349 5-440 2-355 (362)
7 3gqc_A DNA repair protein REV1 100.0 7.2E-72 2.5E-76 650.0 38.3 349 3-429 87-500 (504)
8 3mfi_A DNA polymerase ETA; DNA 100.0 5.7E-72 2E-76 653.7 36.5 414 2-428 29-517 (520)
9 3pzp_A DNA polymerase kappa; D 100.0 5.8E-71 2E-75 645.2 37.9 379 2-429 88-510 (517)
10 1t94_A Polymerase (DNA directe 100.0 1.7E-71 6E-76 641.3 30.4 394 2-429 32-454 (459)
11 2aq4_A DNA repair protein REV1 100.0 5.2E-68 1.8E-72 608.6 32.9 344 3-426 51-433 (434)
12 1im4_A DBH; DNA polymerase PAL 100.0 7.7E-56 2.6E-60 467.2 21.4 215 3-283 5-221 (221)
13 2i5o_A DNA polymerase ETA; zin 99.4 3E-14 1E-18 111.7 0.2 36 946-981 4-39 (39)
14 1unn_C POL IV, DNA polymerase 99.2 7.9E-11 2.7E-15 111.8 11.2 100 312-428 5-107 (115)
15 2a1j_A DNA repair endonuclease 96.3 0.0054 1.9E-07 52.6 5.6 51 247-299 6-57 (63)
16 2zvk_U DNA polymerase ETA, pro 96.0 0.0016 5.5E-08 45.9 0.8 16 1024-1039 7-22 (26)
17 1z00_B DNA repair endonuclease 95.3 0.018 6.1E-07 52.4 5.1 51 247-299 20-71 (84)
18 1wcn_A Transcription elongatio 94.9 0.019 6.4E-07 50.4 3.9 53 246-299 8-62 (70)
19 1kft_A UVRC, excinuclease ABC 91.8 0.099 3.4E-06 46.0 3.2 52 245-298 24-77 (78)
20 1z00_A DNA excision repair pro 91.8 0.16 5.5E-06 45.7 4.7 52 246-299 20-73 (89)
21 2a1j_B DNA excision repair pro 91.6 0.15 5.2E-06 46.2 4.4 52 246-299 33-86 (91)
22 3bqs_A Uncharacterized protein 90.1 0.19 6.3E-06 46.6 3.5 38 246-284 5-42 (93)
23 3mab_A Uncharacterized protein 90.0 0.23 7.8E-06 46.0 3.9 38 246-284 5-42 (93)
24 1b22_A DNA repair protein RAD5 89.6 0.22 7.5E-06 47.7 3.7 56 244-300 22-81 (114)
25 1z3e_B DNA-directed RNA polyme 89.1 0.45 1.6E-05 42.1 5.1 55 242-298 6-62 (73)
26 1vq8_Y 50S ribosomal protein L 87.6 0.11 3.6E-06 55.8 0.0 54 245-299 15-70 (241)
27 2nrt_A Uvrabc system protein C 87.2 0.37 1.3E-05 51.1 3.8 52 244-297 167-219 (220)
28 3gfk_B DNA-directed RNA polyme 85.9 0.87 3E-05 41.0 4.9 54 242-297 13-68 (79)
29 1x2i_A HEF helicase/nuclease; 85.2 0.8 2.7E-05 39.2 4.3 52 246-299 15-68 (75)
30 3k4g_A DNA-directed RNA polyme 84.1 1.2 4.2E-05 40.6 5.1 53 244-298 11-65 (86)
31 1ixr_A Holliday junction DNA h 82.9 0.63 2.2E-05 48.2 3.1 56 246-301 73-131 (191)
32 2va8_A SSO2462, SKI2-type heli 82.2 0.73 2.5E-05 55.4 3.8 52 245-298 657-708 (715)
33 1qw2_A Conserved hypothetical 81.9 0.54 1.9E-05 44.2 1.9 26 43-68 75-100 (102)
34 1pzn_A RAD51, DNA repair and r 81.8 1.6 5.6E-05 48.5 6.2 56 242-298 32-89 (349)
35 2i1q_A DNA repair and recombin 79.9 1.5 5.1E-05 47.6 4.9 54 245-299 3-58 (322)
36 1cuk_A RUVA protein; DNA repai 79.2 0.83 2.8E-05 47.7 2.5 55 246-300 74-131 (203)
37 3im1_A Protein SNU246, PRE-mRN 78.5 2.1 7.2E-05 47.2 5.6 58 244-302 156-215 (328)
38 1ci4_A Protein (barrier-TO-aut 78.4 1 3.5E-05 41.4 2.5 32 242-274 15-46 (89)
39 1coo_A RNA polymerase alpha su 77.9 1.6 5.5E-05 40.8 3.7 52 245-298 24-77 (98)
40 2duy_A Competence protein come 76.9 1.2 4.2E-05 38.7 2.5 30 247-276 29-58 (75)
41 2p6r_A Afuhel308 helicase; pro 76.5 1.3 4.4E-05 53.3 3.4 52 245-298 632-683 (702)
42 2q0z_X Protein Pro2281; SEC63, 74.5 3.5 0.00012 45.7 6.0 56 245-301 161-218 (339)
43 2lvu_A Zinc finger and BTB dom 76.4 0.64 2.2E-05 30.6 0.0 23 951-973 2-25 (26)
44 2bgw_A XPF endonuclease; hydro 72.6 2.5 8.4E-05 43.9 3.9 51 247-299 164-216 (219)
45 2kz3_A Putative uncharacterize 72.6 3.9 0.00013 37.0 4.7 43 243-286 2-44 (83)
46 2lvt_A Zinc finger and BTB dom 73.8 0.84 2.9E-05 30.7 0.0 24 951-974 2-26 (29)
47 1znf_A 31ST zinc finger from X 71.1 0.96 3.3E-05 29.7 0.3 22 952-973 2-24 (27)
48 2zj8_A DNA helicase, putative 70.2 3.5 0.00012 49.7 5.1 56 244-300 645-702 (720)
49 1ard_A Yeast transcription fac 69.9 0.98 3.3E-05 30.1 0.1 23 951-973 2-25 (29)
50 2lvr_A Zinc finger and BTB dom 72.5 0.95 3.2E-05 30.4 0.0 24 951-974 3-27 (30)
51 2elr_A Zinc finger protein 406 68.4 1.6 5.4E-05 30.9 1.0 26 949-974 7-33 (36)
52 3c65_A Uvrabc system protein C 67.9 1.1 3.7E-05 47.7 0.0 53 244-298 172-225 (226)
53 2m0e_A Zinc finger and BTB dom 67.2 1.6 5.4E-05 28.8 0.7 24 951-974 2-26 (29)
54 2els_A Zinc finger protein 406 65.9 1.3 4.5E-05 31.5 0.1 26 949-974 7-33 (36)
55 2ztd_A Holliday junction ATP-d 65.3 3.9 0.00013 43.0 3.6 53 249-301 92-147 (212)
56 1rik_A E6APC1 peptide; E6-bind 65.2 1.2 4.1E-05 29.7 -0.2 24 951-974 2-26 (29)
57 2fmp_A DNA polymerase beta; nu 64.9 2.9 0.0001 46.6 2.7 29 247-276 100-128 (335)
58 1klr_A Zinc finger Y-chromosom 64.2 1.8 6.3E-05 28.7 0.6 24 951-974 2-26 (30)
59 3lda_A DNA repair protein RAD5 63.9 6.5 0.00022 44.8 5.4 57 241-298 77-137 (400)
60 2w9m_A Polymerase X; SAXS, DNA 63.6 2.4 8.1E-05 50.6 1.8 46 247-293 99-147 (578)
61 2m0d_A Zinc finger and BTB dom 63.0 1.1 3.8E-05 29.8 -0.7 23 951-973 3-26 (30)
62 2kvh_A Zinc finger and BTB dom 62.5 1.1 3.8E-05 29.7 -0.8 23 951-973 3-26 (27)
63 2owo_A DNA ligase; protein-DNA 62.2 7.2 0.00025 47.4 5.6 53 244-296 445-499 (671)
64 2m0f_A Zinc finger and BTB dom 61.9 1.2 4.1E-05 29.5 -0.7 24 951-974 2-26 (29)
65 2z43_A DNA repair and recombin 61.4 1.7 5.8E-05 47.5 0.0 41 245-286 12-52 (324)
66 1rim_A E6APC2 peptide; E6-bind 61.1 1.9 6.4E-05 30.5 0.2 24 951-974 2-26 (33)
67 2kvf_A Zinc finger and BTB dom 61.0 1.2 4.2E-05 29.6 -0.8 23 951-973 3-26 (28)
68 2kfq_A FP1; protein, de novo p 60.7 1.3 4.5E-05 31.0 -0.7 24 951-974 2-26 (32)
69 1dgs_A DNA ligase; AMP complex 60.4 5.7 0.00019 48.3 4.3 51 246-296 442-494 (667)
70 1p7a_A BF3, BKLF, kruppel-like 60.4 2.8 9.6E-05 29.8 1.0 26 949-974 9-35 (37)
71 1srk_A Zinc finger protein ZFP 58.9 2.2 7.5E-05 30.0 0.2 25 949-973 5-30 (35)
72 2elx_A Zinc finger protein 406 58.0 2 6.8E-05 30.0 -0.1 26 949-974 5-31 (35)
73 3p87_G Ribonuclease H2 subunit 57.8 2.4 8.3E-05 29.7 0.3 14 1024-1037 3-16 (23)
74 2kvg_A Zinc finger and BTB dom 57.5 1.1 3.8E-05 29.9 -1.5 23 951-973 3-26 (27)
75 1gm5_A RECG; helicase, replica 57.1 5.1 0.00017 49.5 3.1 31 245-276 115-145 (780)
76 2enh_A Zinc finger protein 28 56.7 3.9 0.00013 30.7 1.4 26 949-974 10-36 (46)
77 2elq_A Zinc finger protein 406 56.4 2.1 7.3E-05 30.3 -0.2 26 949-974 7-33 (36)
78 2elt_A Zinc finger protein 406 55.4 2.6 8.8E-05 29.7 0.1 26 949-974 7-33 (36)
79 2ely_A Zinc finger protein 224 55.3 4.5 0.00016 30.4 1.5 26 949-974 10-36 (46)
80 2ytb_A Zinc finger protein 32; 55.0 4.7 0.00016 29.4 1.5 26 949-974 9-35 (42)
81 2yth_A Zinc finger protein 224 54.9 4.3 0.00015 30.5 1.3 26 949-974 10-36 (46)
82 3b0x_A DNA polymerase beta fam 54.4 5.1 0.00017 47.6 2.4 54 247-300 95-151 (575)
83 2elp_A Zinc finger protein 406 53.9 3.3 0.00011 29.5 0.4 26 949-974 7-34 (37)
84 2eom_A ZFP-95, zinc finger pro 53.7 4.8 0.00016 30.3 1.4 26 949-974 10-36 (46)
85 2elv_A Zinc finger protein 406 53.7 2.7 9.3E-05 29.7 -0.0 25 949-973 7-32 (36)
86 2e72_A POGO transposable eleme 53.7 4.7 0.00016 33.1 1.3 24 950-973 11-35 (49)
87 2eou_A Zinc finger protein 473 53.5 4 0.00014 30.4 0.9 26 949-974 10-36 (44)
88 2elo_A Zinc finger protein 406 53.4 2.6 8.8E-05 30.0 -0.2 26 949-974 7-33 (37)
89 2eon_A ZFP-95, zinc finger pro 53.3 4 0.00014 30.8 0.9 26 949-974 10-36 (46)
90 2lv2_A Insulinoma-associated p 53.2 4.3 0.00015 36.2 1.2 38 937-974 14-52 (85)
91 2yti_A Zinc finger protein 347 52.4 4 0.00014 30.6 0.7 26 949-974 10-36 (46)
92 2ytt_A Zinc finger protein 473 52.2 5.4 0.00018 30.0 1.5 28 948-975 9-37 (46)
93 2enf_A Zinc finger protein 347 52.0 4 0.00014 30.6 0.7 26 949-974 10-36 (46)
94 2czr_A TBP-interacting protein 51.9 2.2 7.7E-05 43.7 -1.0 22 952-973 155-176 (226)
95 1jms_A Terminal deoxynucleotid 51.8 5.9 0.0002 45.0 2.3 29 246-275 122-150 (381)
96 2eq2_A Zinc finger protein 347 51.7 5.2 0.00018 30.0 1.3 26 949-974 10-36 (46)
97 2elz_A Zinc finger protein 224 51.6 5.2 0.00018 30.1 1.3 26 949-974 10-36 (46)
98 2emg_A Zinc finger protein 484 51.4 4 0.00014 30.6 0.6 26 949-974 10-36 (46)
99 2en7_A Zinc finger protein 268 51.3 4.2 0.00015 30.0 0.7 25 949-973 10-35 (44)
100 2yrm_A B-cell lymphoma 6 prote 51.3 4.5 0.00016 30.1 0.9 26 949-974 8-34 (43)
101 2eos_A B-cell lymphoma 6 prote 51.3 4.6 0.00016 29.6 0.9 26 949-974 9-35 (42)
102 2emi_A Zinc finger protein 484 51.2 3.4 0.00012 31.0 0.2 26 949-974 10-36 (46)
103 2lce_A B-cell lymphoma 6 prote 51.0 4.5 0.00015 33.6 0.9 27 948-974 14-41 (74)
104 2bcq_A DNA polymerase lambda; 51.0 7.3 0.00025 43.4 2.9 28 248-276 99-126 (335)
105 2ept_A Zinc finger protein 32; 50.9 3.4 0.00011 30.2 0.1 26 949-974 8-34 (41)
106 2ihm_A POL MU, DNA polymerase 50.9 6.2 0.00021 44.4 2.3 28 247-275 104-131 (360)
107 2ytn_A Zinc finger protein 347 50.8 5.1 0.00017 30.0 1.1 26 949-974 10-36 (46)
108 2eoh_A Zinc finger protein 28 50.5 4.3 0.00015 30.5 0.6 26 949-974 10-36 (46)
109 2en9_A Zinc finger protein 28 50.4 4.7 0.00016 30.3 0.8 26 949-974 10-36 (46)
110 2emz_A ZFP-95, zinc finger pro 50.4 4.9 0.00017 30.2 1.0 27 949-975 10-37 (46)
111 2ytr_A Zinc finger protein 347 50.2 4.4 0.00015 30.3 0.7 26 949-974 10-36 (46)
112 2ytm_A Zinc finger protein 28 49.4 4.5 0.00016 30.5 0.6 27 949-975 10-37 (46)
113 2epr_A POZ-, at HOOK-, and zin 49.2 3.4 0.00012 31.6 -0.1 27 948-974 9-36 (48)
114 2ytg_A ZFP-95, zinc finger pro 49.1 5.8 0.0002 29.7 1.2 26 949-974 10-36 (46)
115 1paa_A Yeast transcription fac 49.0 4.2 0.00015 27.1 0.4 23 951-973 2-26 (30)
116 1fv5_A First zinc finger of U- 48.7 3.3 0.00011 31.4 -0.3 25 949-973 6-31 (36)
117 2em0_A Zinc finger protein 224 48.6 6.2 0.00021 29.5 1.3 26 949-974 10-36 (46)
118 2em7_A Zinc finger protein 224 48.4 4.5 0.00015 30.3 0.5 26 949-974 10-36 (46)
119 2ep0_A Zinc finger protein 28 48.3 4.2 0.00014 30.5 0.3 27 948-974 9-36 (46)
120 2epc_A Zinc finger protein 32; 48.0 3.6 0.00012 30.1 -0.2 26 949-974 9-35 (42)
121 2eov_A Zinc finger protein 484 47.8 5.5 0.00019 29.8 0.9 26 949-974 10-36 (46)
122 2en2_A B-cell lymphoma 6 prote 47.6 4.2 0.00014 29.8 0.2 27 949-975 9-36 (42)
123 2emf_A Zinc finger protein 484 47.1 4.5 0.00015 30.4 0.3 26 949-974 10-36 (46)
124 2eq1_A Zinc finger protein 347 47.0 5.4 0.00019 29.9 0.7 26 949-974 10-36 (46)
125 2epu_A Zinc finger protein 32; 47.0 3.4 0.00012 30.9 -0.4 27 948-974 9-36 (45)
126 2yts_A Zinc finger protein 484 46.6 4.5 0.00015 30.2 0.2 26 949-974 10-36 (46)
127 2yte_A Zinc finger protein 473 46.6 5.5 0.00019 29.0 0.7 26 949-974 8-34 (42)
128 2ep1_A Zinc finger protein 484 46.6 6.2 0.00021 29.4 1.0 26 949-974 10-36 (46)
129 2emj_A Zinc finger protein 28 46.6 4.2 0.00014 30.6 0.1 26 949-974 10-36 (46)
130 2em6_A Zinc finger protein 224 46.5 5.5 0.00019 29.9 0.7 26 949-974 10-36 (46)
131 2yu8_A Zinc finger protein 347 46.4 5.4 0.00019 29.9 0.6 26 949-974 10-36 (46)
132 2ytq_A Zinc finger protein 268 46.1 5.7 0.0002 29.8 0.7 26 949-974 10-36 (46)
133 2eox_A Zinc finger protein 473 46.0 4.8 0.00016 29.9 0.3 26 949-974 10-36 (44)
134 4gfj_A Topoisomerase V; helix- 46.0 12 0.00041 43.0 3.6 49 247-300 470-518 (685)
135 2epp_A POZ-, at HOOK-, and zin 46.0 7.7 0.00026 33.2 1.6 30 949-978 11-41 (66)
136 2em9_A Zinc finger protein 224 45.9 5.1 0.00017 29.9 0.4 26 949-974 10-36 (46)
137 2el5_A Zinc finger protein 268 45.8 4.6 0.00016 29.5 0.2 26 949-974 8-34 (42)
138 2epv_A Zinc finger protein 268 45.6 4.7 0.00016 30.1 0.2 26 949-974 10-36 (44)
139 2epz_A Zinc finger protein 28 45.3 5.9 0.0002 29.6 0.7 26 949-974 10-36 (46)
140 2eor_A Zinc finger protein 224 45.2 4.6 0.00016 30.2 0.1 26 949-974 10-36 (46)
141 2em4_A Zinc finger protein 28 45.0 4.7 0.00016 30.3 0.1 26 949-974 10-36 (46)
142 2em2_A Zinc finger protein 28 44.5 4.8 0.00016 30.3 0.1 26 949-974 10-36 (46)
143 2eq4_A Zinc finger protein 224 44.3 5.5 0.00019 29.7 0.4 26 949-974 10-36 (46)
144 2emb_A Zinc finger protein 473 44.3 5.5 0.00019 29.5 0.4 26 949-974 10-36 (44)
145 2em8_A Zinc finger protein 224 44.2 4.7 0.00016 30.3 -0.0 26 949-974 10-36 (46)
146 2yu5_A Zinc finger protein 473 44.2 5 0.00017 29.7 0.1 26 949-974 10-36 (44)
147 1zfd_A SWI5; DNA binding motif 44.1 7.1 0.00024 26.6 0.9 24 951-974 3-29 (32)
148 2eoy_A Zinc finger protein 473 43.9 5 0.00017 30.1 0.1 26 949-974 10-36 (46)
149 2emx_A Zinc finger protein 268 43.9 4.9 0.00017 29.8 0.0 26 949-974 8-34 (44)
150 2eoq_A Zinc finger protein 224 43.8 6.7 0.00023 29.3 0.8 26 949-974 10-36 (46)
151 2emh_A Zinc finger protein 484 43.6 5 0.00017 30.1 0.0 26 949-974 10-36 (46)
152 2eop_A Zinc finger protein 268 43.6 6.5 0.00022 29.3 0.7 26 949-974 10-36 (46)
153 2epw_A Zinc finger protein 268 43.5 5.1 0.00017 29.9 0.1 26 949-974 10-36 (46)
154 2yto_A Zinc finger protein 484 43.3 5 0.00017 30.2 -0.0 26 949-974 10-36 (46)
155 2yrj_A Zinc finger protein 473 43.2 4.7 0.00016 30.1 -0.2 26 949-974 10-36 (46)
156 2epq_A POZ-, at HOOK-, and zin 43.0 5 0.00017 30.0 -0.0 26 949-974 8-34 (45)
157 2emk_A Zinc finger protein 28 43.0 7.2 0.00025 29.2 0.9 26 949-974 10-36 (46)
158 2ene_A Zinc finger protein 347 42.9 5 0.00017 30.1 -0.1 26 949-974 10-36 (46)
159 2ytp_A Zinc finger protein 484 42.8 4.9 0.00017 30.2 -0.1 26 949-974 10-36 (46)
160 2em3_A Zinc finger protein 28 42.8 5.1 0.00018 30.0 0.0 26 949-974 10-36 (46)
161 2cot_A Zinc finger protein 435 42.7 11 0.00036 31.5 2.0 26 949-974 16-42 (77)
162 2eml_A Zinc finger protein 28 42.4 5.5 0.00019 29.8 0.1 26 949-974 10-36 (46)
163 2ema_A Zinc finger protein 347 42.3 5.6 0.00019 29.8 0.1 26 949-974 10-36 (46)
164 2ytf_A Zinc finger protein 268 41.9 4.8 0.00016 30.1 -0.3 26 949-974 10-36 (46)
165 2eoe_A Zinc finger protein 347 41.8 5.3 0.00018 29.8 -0.1 26 949-974 10-36 (46)
166 4f92_B U5 small nuclear ribonu 41.8 15 0.00051 49.3 4.1 57 244-301 1556-1614(1724)
167 2ytj_A Zinc finger protein 484 41.7 5.1 0.00018 30.0 -0.2 26 949-974 10-36 (46)
168 2edu_A Kinesin-like protein KI 41.6 16 0.00056 33.2 3.2 30 247-276 42-75 (98)
169 1njq_A Superman protein; zinc- 41.5 4.6 0.00016 29.2 -0.4 26 949-974 4-30 (39)
170 2en3_A ZFP-95, zinc finger pro 41.5 6.6 0.00023 29.4 0.4 27 949-975 10-37 (46)
171 2emm_A ZFP-95, zinc finger pro 41.4 5.7 0.0002 29.6 0.1 26 949-974 10-36 (46)
172 1x5w_A Zinc finger protein 64, 41.3 6.3 0.00021 32.3 0.3 26 949-974 7-33 (70)
173 2yso_A ZFP-95, zinc finger pro 41.2 5.7 0.0002 29.7 0.0 26 949-974 10-36 (46)
174 2eow_A Zinc finger protein 347 41.1 5.7 0.0002 29.6 0.0 26 949-974 10-36 (46)
175 2ep3_A Zinc finger protein 484 41.1 5.5 0.00019 29.8 -0.1 26 949-974 10-36 (46)
176 4gzn_C ZFP-57, zinc finger pro 40.8 5.1 0.00017 33.4 -0.3 27 949-975 2-29 (60)
177 2em5_A ZFP-95, zinc finger pro 40.6 5.5 0.00019 29.9 -0.1 26 949-974 10-36 (46)
178 2ytk_A Zinc finger protein 347 40.5 6 0.0002 29.6 0.0 26 949-974 10-36 (46)
179 2eoj_A Zinc finger protein 268 40.5 4.8 0.00016 29.8 -0.5 26 949-974 10-36 (44)
180 2eme_A Zinc finger protein 473 40.2 6.3 0.00022 29.4 0.1 26 949-974 10-36 (46)
181 2el6_A Zinc finger protein 268 40.2 6.5 0.00022 29.5 0.2 26 949-974 10-36 (46)
182 2el4_A Zinc finger protein 268 40.1 6.4 0.00022 29.4 0.1 26 949-974 10-36 (46)
183 2en6_A Zinc finger protein 268 40.1 4.6 0.00016 30.2 -0.6 26 949-974 10-36 (46)
184 2eoo_A ZFP-95, zinc finger pro 40.0 6.2 0.00021 29.6 0.1 27 949-975 10-37 (46)
185 1sp2_A SP1F2; zinc finger, tra 40.0 5.9 0.0002 26.9 -0.0 23 951-973 2-27 (31)
186 1wwu_A Hypothetical protein FL 39.7 30 0.001 32.4 4.6 53 235-298 26-78 (99)
187 3arc_U Photosystem II 12 kDa e 39.7 19 0.00065 33.4 3.3 30 247-276 28-57 (97)
188 2enc_A Zinc finger protein 224 39.7 5.5 0.00019 29.8 -0.3 26 949-974 10-36 (46)
189 2emp_A Zinc finger protein 347 39.6 6.3 0.00022 29.5 0.1 26 949-974 10-36 (46)
190 2ep2_A Zinc finger protein 484 39.6 5.8 0.0002 29.7 -0.2 26 949-974 10-36 (46)
191 2eoz_A Zinc finger protein 473 39.5 4.8 0.00016 30.2 -0.6 26 949-974 10-36 (46)
192 1u9l_A Transcription elongatio 39.4 31 0.0011 30.1 4.4 48 250-298 11-60 (70)
193 2eq3_A Zinc finger protein 347 39.3 5.2 0.00018 29.9 -0.5 26 949-974 10-36 (46)
194 2eq0_A Zinc finger protein 347 39.1 5.9 0.0002 29.7 -0.2 26 949-974 10-36 (46)
195 2en1_A Zinc finger protein 224 39.0 5.8 0.0002 29.7 -0.3 26 949-974 10-36 (46)
196 2emy_A Zinc finger protein 268 38.7 6.5 0.00022 29.4 0.0 26 949-974 10-36 (46)
197 4glx_A DNA ligase; inhibitor, 38.2 31 0.001 41.4 5.6 51 246-297 447-500 (586)
198 2en8_A Zinc finger protein 224 37.8 6.4 0.00022 29.4 -0.2 26 949-974 10-36 (46)
199 1x6e_A Zinc finger protein 24; 37.8 9.4 0.00032 31.5 0.8 26 949-974 12-38 (72)
200 2adr_A ADR1; transcription reg 37.6 6.7 0.00023 30.9 -0.1 24 951-974 2-26 (60)
201 2e8m_A Epidermal growth factor 37.0 39 0.0013 31.7 4.8 52 235-298 36-87 (99)
202 2ytd_A Zinc finger protein 473 36.7 7.5 0.00026 29.1 0.1 26 949-974 10-36 (46)
203 2eof_A Zinc finger protein 268 36.7 6.9 0.00023 28.8 -0.2 26 949-974 10-36 (44)
204 1v5w_A DMC1, meiotic recombina 36.5 7.4 0.00025 42.9 0.0 52 246-298 26-81 (343)
205 2ee8_A Protein ODD-skipped-rel 36.1 16 0.00053 32.1 2.1 26 949-974 15-41 (106)
206 1bbo_A Human enhancer-binding 35.9 7.6 0.00026 30.2 -0.0 24 952-975 2-26 (57)
207 2ysp_A Zinc finger protein 224 35.7 5.2 0.00018 29.9 -1.0 26 949-974 10-36 (46)
208 3uk3_C Zinc finger protein 217 35.4 8 0.00027 30.1 0.0 25 951-975 4-29 (57)
209 1s5l_U Photosystem II 12 kDa e 34.7 27 0.00093 34.3 3.6 30 248-277 66-95 (134)
210 1yui_A GAGA-factor; complex (D 34.5 7.5 0.00026 30.4 -0.3 26 949-974 22-48 (54)
211 3r8n_M 30S ribosomal protein S 33.8 29 0.00099 33.2 3.6 30 246-275 17-49 (114)
212 2elm_A Zinc finger protein 406 33.4 6.9 0.00024 28.0 -0.6 25 949-973 7-33 (37)
213 1wjp_A Zinc finger protein 295 33.0 18 0.00061 32.1 1.9 26 948-973 13-39 (107)
214 2d9h_A Zinc finger protein 692 31.5 9.9 0.00034 31.7 -0.0 27 949-975 5-32 (78)
215 2epx_A Zinc finger protein 28 30.9 14 0.00047 27.5 0.7 26 949-974 10-37 (47)
216 2dmd_A Zinc finger protein 64, 30.8 14 0.00047 31.8 0.8 25 950-974 7-32 (96)
217 2ab3_A ZNF29; zinc finger prot 30.2 6.3 0.00022 25.9 -1.2 23 951-973 2-27 (29)
218 3c1y_A DNA integrity scanning 29.8 26 0.0009 39.8 3.0 49 247-297 317-367 (377)
219 2eps_A POZ-, at HOOK-, and zin 29.8 11 0.00039 29.4 0.1 27 948-974 9-37 (54)
220 1bhi_A CRE-BP1, ATF-2; CRE bin 29.5 10 0.00035 27.0 -0.2 26 950-975 5-33 (38)
221 3u5c_S 40S ribosomal protein S 29.1 30 0.001 34.4 3.0 41 245-285 30-73 (146)
222 2gqj_A Zinc finger protein KIA 28.8 18 0.00063 31.9 1.3 27 949-975 22-50 (98)
223 2xzm_M RPS18E; ribosome, trans 28.2 34 0.0012 34.4 3.2 41 246-286 31-74 (155)
224 2vqe_M 30S ribosomal protein S 28.1 31 0.0011 33.5 2.8 39 246-284 18-59 (126)
225 2d9k_A FLN29 gene product; zin 28.1 9.8 0.00034 32.6 -0.6 22 952-973 44-65 (75)
226 2yt9_A Zinc finger-containing 27.3 13 0.00045 31.9 0.0 23 951-973 7-30 (95)
227 1va1_A Transcription factor SP 26.9 13 0.00044 26.6 -0.1 26 949-974 6-34 (37)
228 3iz6_M 40S ribosomal protein S 26.9 36 0.0012 34.1 3.1 40 246-285 29-71 (152)
229 2eln_A Zinc finger protein 406 26.8 14 0.00049 27.9 0.2 26 949-974 7-35 (38)
230 4gzn_C ZFP-57, zinc finger pro 26.1 13 0.00046 30.8 -0.1 25 949-973 30-55 (60)
231 4f92_B U5 small nuclear ribonu 26.0 62 0.0021 43.5 6.0 57 244-302 725-782 (1724)
232 3tvk_A DGC, diguanylate cyclas 25.6 1.5E+02 0.005 29.7 7.4 29 91-119 58-89 (179)
233 2lce_A B-cell lymphoma 6 prote 25.2 12 0.00043 30.8 -0.5 25 950-974 44-69 (74)
234 3iuf_A Zinc finger protein UBI 24.6 12 0.00042 28.7 -0.6 27 949-975 5-33 (48)
235 1x6e_A Zinc finger protein 24; 24.3 14 0.00047 30.5 -0.4 25 950-974 41-66 (72)
236 2wbs_A Krueppel-like factor 4; 24.1 14 0.00047 31.2 -0.4 24 951-974 65-89 (89)
237 3j20_O 30S ribosomal protein S 23.7 36 0.0012 34.0 2.4 41 246-286 24-67 (148)
238 2ihm_A POL MU, DNA polymerase 23.4 38 0.0013 38.1 2.8 53 247-301 63-124 (360)
239 2bcq_A DNA polymerase lambda; 23.3 45 0.0016 37.1 3.4 53 247-301 59-118 (335)
240 2ebt_A Krueppel-like factor 5; 23.3 20 0.00068 30.9 0.4 25 949-973 73-98 (100)
241 2epa_A Krueppel-like factor 10 22.5 28 0.00097 28.3 1.2 28 947-974 13-43 (72)
242 2ctu_A Zinc finger protein 483 22.5 15 0.00052 29.6 -0.5 26 949-974 37-63 (73)
243 2csh_A Zinc finger protein 297 22.1 32 0.0011 30.3 1.6 28 950-977 64-92 (110)
244 2owo_A DNA ligase; protein-DNA 21.9 56 0.0019 39.8 4.0 15 110-124 282-296 (671)
245 1llm_C Chimera of ZIF23-GCN4; 21.7 16 0.00055 31.2 -0.5 24 951-974 3-27 (88)
246 2dlq_A GLI-kruppel family memb 21.6 26 0.00087 31.3 0.8 25 950-974 6-31 (124)
247 1f2i_G Fusion of N-terminal 17 21.0 16 0.00054 30.0 -0.7 23 951-973 49-72 (73)
248 1x5w_A Zinc finger protein 64, 20.4 18 0.00063 29.4 -0.4 26 950-975 36-62 (70)
249 2ctd_A Zinc finger protein 512 20.2 21 0.00071 31.9 -0.2 24 950-973 33-58 (96)
250 2ee8_A Protein ODD-skipped-rel 20.1 24 0.00082 30.9 0.3 26 950-975 72-98 (106)
No 1
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=100.00 E-value=6.1e-79 Score=699.48 Aligned_cols=417 Identities=48% Similarity=0.808 Sum_probs=364.4
Q ss_pred CCcEEEEEeCCchhHHhHhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCCC
Q psy16215 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR 81 (1041)
Q Consensus 2 ~~RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n~~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~~ 81 (1041)
..|+|+||||||||||||++++|+|+++||||++++.+.+|+|+||||+||++||++||++++|+++||++++++++..+
T Consensus 8 ~~r~I~hiD~d~FyAsvE~~~~P~L~~kPvvV~~~~~~~~g~viA~syeAR~~GV~~gm~~~~A~~lcP~l~~~~~~~~~ 87 (435)
T 4ecq_A 8 QDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRESR 87 (435)
T ss_dssp CSCCEEEEEETTHHHHHHHHHCGGGTTSCEEEEECSTTTTCEEEEECHHHHTTTCCTTCBHHHHHHHCTTCEEEECCEET
T ss_pred CCcEEEEEccchHHHHHHhhhCccccCCcEEEeccCCCCCCeEEEeCHHHHHhCCCCCCcHHHHHHhCCCeEEecccccc
Confidence 46899999999999999999999999999999998655678999999999999999999999999999999999887777
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhh--ccccccccccccccccCCCCCC-------c
Q psy16215 82 GKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKS--IGHIAASQLSNTFVVGFGPDNN-------D 152 (1041)
Q Consensus 82 ~k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~--~~~~~~~~L~~~~~~g~~~~~~-------~ 152 (1041)
+++||+.|+++|++|+++|.+|+ .||++||||+|||||+++..++.+ ..+.....+.++++.|++.... .
T Consensus 88 ~~~~~~~Y~~~S~~i~~il~~~~-~vE~~SiDEafLDlT~~~~~~l~~l~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 166 (435)
T 4ecq_A 88 GKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQK 166 (435)
T ss_dssp TEECCHHHHHHHHHHHHHHHHHS-CEEEEETTEEEEECHHHHHHHHHHHTTCCCCGGGCTTEEETTCSCCCC-----CSH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC-ceeecccceEEEECccchhhcchhccccccccccccccccccCCCcccccccccch
Confidence 78999999999999999999999 999999999999999998766533 1122223344556666654321 2
Q ss_pred hhhhhhcchhhcccc-cCCCcccccccchhHHhhhHHHHHHHHHHHHHHhhhCCceeEEEeCCHHHHHHhccCCCCCceE
Q psy16215 153 EDARKAGVMEWLGQV-YSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231 (1041)
Q Consensus 153 e~~r~~g~~~W~~~L-Fg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~elGlt~SVGIA~NKlLAKLAS~~aKPnGqt 231 (1041)
++.+..++..|...+ ++ ..+|++++|++|..+|++||++|++++|||||||||+||++||||++++||+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~ia~~Ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~ 239 (435)
T 4ecq_A 167 EGMRKQGLFQWLDSLQID-------NLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQT 239 (435)
T ss_dssp HHHHHHHHHHHHHHCCTT-------CTTCHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHSCSSCEE
T ss_pred hhhhcccccccccccccc-------cccchhhhhhHHHHHHHHHHHHHHHHhCCcEEEEecCCHHHHHHHhccCCCCceE
Confidence 444555556664321 11 2357889999999999999999999999999999999999999999999999999
Q ss_pred EeccchHHHhhhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHcCCCCcccccccCC
Q psy16215 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVS 311 (1041)
Q Consensus 232 vl~p~~v~~fL~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aRGiD~epV~p~~pp 311 (1041)
+++++++.+||+++||++|||||+++++++|+.+||+|++||+++|+..|+++||.+.|.+||+.|+|+|.++|.+..++
T Consensus 240 vv~~~~~~~~L~~lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~v~~~~~~ 319 (435)
T 4ecq_A 240 LVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLP 319 (435)
T ss_dssp ECCGGGHHHHHHTCBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCBCSC
T ss_pred EEehhHHHHHHhhCCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHHhCccHHHHHHHHhhCCCCcccCCCCCC
Confidence 99999999999999999999999999887789999999999999999999999997799999999999999999998899
Q ss_pred cceeeEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhchhccCceeeEEEEEEEEcCCCCceeEEEEEeCCCCcHHHHH
Q psy16215 312 KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIV 391 (1041)
Q Consensus 312 KSIssErTF~~r~dLtd~eeL~~~L~~LaeELaeRLRr~~~~ngr~artLTLkLR~sd~g~~~s~SRSl~LpT~Dae~L~ 391 (1041)
|||+++++|+.+.++.+.+++..+|..|+++|+.||+++..++++.|++|+|++++.++....+++|+++++.+++..|+
T Consensus 320 ksi~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~rLr~~~~~~~~~~~~l~v~ir~~~~~~~~~~~R~~~l~~~~~~~i~ 399 (435)
T 4ecq_A 320 KTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMS 399 (435)
T ss_dssp SCEEEEEECCGGGCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEEEETTCCSSCSEEEEEECCSCCHHHHH
T ss_pred CeeeeeEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEEEEEeCCCCCCceeEEeccCCCCCHHHHH
Confidence 99999999996324789999999999999999999998755568999999999999875445678999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCEEEEEEEEcCCCC
Q psy16215 392 EVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSP 426 (1041)
Q Consensus 392 ~~A~~LL~rL~~~~~~~a~~~pVRlIGVsLSdLvp 426 (1041)
..|+.||++++..+.+..|..|||.|||++++|++
T Consensus 400 ~~a~~L~~~~~~~~~~~~~~~pir~lgvs~s~f~~ 434 (435)
T 4ecq_A 400 HDAFTVIKNCNTSGIQTEWSPPLTMLFLCATKFSA 434 (435)
T ss_dssp HHHHHHHGGGCCCSSTTEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhccccccCCCCeeEEEEEEeeccc
Confidence 99999999998532234567799999999999975
No 2
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=100.00 E-value=7.3e-73 Score=646.71 Aligned_cols=379 Identities=29% Similarity=0.462 Sum_probs=326.8
Q ss_pred CCcEEEEEeCCchhHHhHhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCCC
Q psy16215 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR 81 (1041)
Q Consensus 2 ~~RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n~~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~~ 81 (1041)
..|+|+||||||||||||++++|+|+++||||+++ |+|+||||+||++||++||++++|+++||++++++
T Consensus 26 ~~r~i~hiD~d~FyASvE~~~~P~L~~~Pv~V~~~-----g~V~a~syeAR~~GV~~gm~~~~A~~lcP~lv~v~----- 95 (420)
T 3osn_A 26 SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQK-----YLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVN----- 95 (420)
T ss_dssp CCCCEEEEEETTHHHHHHHHHCGGGTTSCEEEEET-----TEEEEECHHHHTTTCCTTEEHHHHHHHCTTCEEEE-----
T ss_pred CCCEEEEEecCcHHHHHHHHhCcCccCCeEEEcCC-----CEEEECCHHHHHcCCCCCCcHHHHHHhCccccccC-----
Confidence 46999999999999999999999999999999873 79999999999999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhhccccccccccccccccCCCCCCchhhhhhcch
Q psy16215 82 GKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161 (1041)
Q Consensus 82 ~k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~~~~~~~~~L~~~~~~g~~~~~~~e~~r~~g~~ 161 (1041)
.+||+.|+++|++|+++|.+|+|.||++||||+|||||++...++.+..+ ..+.. .
T Consensus 96 -~~~~~~Y~~~S~~i~~il~~~tp~ve~~SiDE~fLDvt~~~~~~l~~~~~---~~~~~--------------------~ 151 (420)
T 3osn_A 96 -GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQS---DELSA--------------------V 151 (420)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHCSCEEEETTTEEEEECHHHHHHHHHHSCS---SSGGG--------------------C
T ss_pred -CCCHHHHHHHHHHHHHHHHHhCCCeEEecCCEEEEECcccchhhcccccc---ccccc--------------------c
Confidence 13999999999999999999999999999999999999998655432100 00000 0
Q ss_pred hhcccccCCCcccccccchhHHhhhHHHHHHHHHHHHHHhhhCCceeEEEeCCHHHHHHhccCCCCCceEEeccchHHHh
Q psy16215 162 EWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241 (1041)
Q Consensus 162 ~W~~~LFg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~elGlt~SVGIA~NKlLAKLAS~~aKPnGqtvl~p~~v~~f 241 (1041)
.|.+.+|++.... ..+|++.++..|..+|++||++|++++|||||+|||+||+|||||++++||+|++++.++++.+|
T Consensus 152 ~~~g~l~g~~~~~--~~~~~~~~l~~~~~la~~Ir~~I~~~~Glt~svGIa~nk~LAKlAs~~~KP~g~~vl~~~~~~~~ 229 (420)
T 3osn_A 152 TVSGHVYNNQSIN--LLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHL 229 (420)
T ss_dssp CCCSEEGGGCCCC--TTCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTSSCSSCEEECCGGGHHHH
T ss_pred ccccccccccccc--cccchhhcchHHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHhhhhcCCCCeEEecHHHHHHh
Confidence 1222356542111 12578888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCC-ccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHcCCCCcccccccCCcceeeEEeC
Q psy16215 242 YANLS-IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRF 320 (1041)
Q Consensus 242 L~~LP-I~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aRGiD~epV~p~~ppKSIssErTF 320 (1041)
|+++| |++|||||++++++ |+.+||+|++||+++|+..|+++||...|.+||++++|+|.++|.+..++|||+++++|
T Consensus 230 L~~Lppv~~l~GIG~~t~~~-L~~lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~V~~~~~~kSi~~e~tf 308 (420)
T 3osn_A 230 IHSLNHIKEIPGIGYKTAKC-LEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSF 308 (420)
T ss_dssp HHHCSSGGGSTTCCHHHHHH-HHHTTCCSHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSCSEEEEEEEC
T ss_pred hccCccHHHccCCCHHHHHH-HHHhCCCcHHHHhhCCHHHHHHHhCchHHHHHHHHhcCCCccccCCCCCCCceeeeeeC
Confidence 99997 99999999999998 79999999999999999999999996689999999999999999998899999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhchhccCceeeEEEEEEEE-cCCCCceeEEEEEeCCC-----------CcHH
Q psy16215 321 PGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQ-ETDGKVNSCSRSIALAS-----------YKLQ 388 (1041)
Q Consensus 321 ~~r~dLtd~eeL~~~L~~LaeELaeRLRr~~~~ngr~artLTLkLR~-sd~g~~~s~SRSl~LpT-----------~Dae 388 (1041)
+. +.+.+++..+|..|+++|+.||+++ ++.+++|+|++++ ..+..+.+.+|++++|. ++..
T Consensus 309 ~~---~~~~~~~~~~l~~La~~l~~rLr~~----~~~~~tv~l~ir~~~~~~~~~~~sr~~~l~~~~~~~l~~~~t~~~~ 381 (420)
T 3osn_A 309 KK---CSSEVEAKNKIEELLASLLNRVCQD----GRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMT 381 (420)
T ss_dssp SS---CCCSSSHHHHHHHHHHHHHHHHHHH----CSCEEEEEEEEEEECSSCCCCCEEEEEECCTTTCCC-----CTTHH
T ss_pred CC---CCCHHHHHHHHHHHHHHHHHHHHHc----CCcccEEEEEEEeCCCCCCCceeEEEEECCCccccccccCCCchHH
Confidence 73 6788999999999999999999998 9999999999995 33323456788888864 4568
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCEEEEEEEEcCCCCCC
Q psy16215 389 DIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPLG 428 (1041)
Q Consensus 389 ~L~~~A~~LL~rL~~~~~~~a~~~pVRlIGVsLSdLvp~~ 428 (1041)
+|++.++.||++++.. ....+||+|||++++|.+..
T Consensus 382 ~i~~~a~~Lf~~~~~~----~~~~~iRllgv~~~~l~~~~ 417 (420)
T 3osn_A 382 PMVDILMKLFRNMVNV----KMPFHLTLLSVCFCNLKALN 417 (420)
T ss_dssp HHHHHHHHHHHHHSCS----SSCCEEEEEEEEEEEEC---
T ss_pred HHHHHHHHHHHHhhcc----cCCcceeEEEEEEeCcccCc
Confidence 8999999999999841 01234999999999998754
No 3
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=100.00 E-value=1.9e-73 Score=636.40 Aligned_cols=347 Identities=27% Similarity=0.421 Sum_probs=308.8
Q ss_pred cEEEEEeCCchhHHhHhhhCCCCCCCcEEEEecCC--CCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCCC
Q psy16215 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNT--WKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR 81 (1041)
Q Consensus 4 RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n~--~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~~ 81 (1041)
|+|+||||||||||||++++|+|+++||||++... ..+|+|+||||+||++||++||++++|+++||++++++
T Consensus 1 r~i~hiD~d~FyasvE~~~~p~l~~~Pv~V~~~~~~~~~~g~V~a~syeAr~~GV~~gm~~~~A~~lcP~l~~~~----- 75 (352)
T 1jx4_A 1 MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLP----- 75 (352)
T ss_dssp CCEEEEEETTHHHHHHHHHCGGGTTSCEEEEEECSSSTTCEEEEEECHHHHTTTCCTTSBHHHHHHHCTTSEEEE-----
T ss_pred CEEEEEecCcHHHHHHhHhCccccCCcEEEEeCCCCCCCCeEEEECCHHHHHcCCCCCCcHHHHHHHCCCeEEEC-----
Confidence 78999999999999999999999999999995211 24689999999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhhccccccccccccccccCCCCCCchhhhhhcch
Q psy16215 82 GKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161 (1041)
Q Consensus 82 ~k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~~~~~~~~~L~~~~~~g~~~~~~~e~~r~~g~~ 161 (1041)
+|++.|+++|++|++++.+|+|.||++||||+|||||++.+
T Consensus 76 --~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~------------------------------------- 116 (352)
T 1jx4_A 76 --MRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVR------------------------------------- 116 (352)
T ss_dssp --CCHHHHHHHHHHHHHHHTTTCSCEEEEETTEEEEECTTTCS-------------------------------------
T ss_pred --CCHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEeccCccc-------------------------------------
Confidence 89999999999999999999999999999999999998743
Q ss_pred hhcccccCCCcccccccchhHHhhhHHHHHHHHHHHHHHhhhCCceeEEEeCCHHHHHHhccCCCCCceEEeccchHHHh
Q psy16215 162 EWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241 (1041)
Q Consensus 162 ~W~~~LFg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~elGlt~SVGIA~NKlLAKLAS~~aKPnGqtvl~p~~v~~f 241 (1041)
+|++ +..+|++||++|++++|+|||+|||+||++||||++++||+|++++.++++.+|
T Consensus 117 -----~~~~-----------------~~~~a~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~~~~~~ 174 (352)
T 1jx4_A 117 -----DYRE-----------------AYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRL 174 (352)
T ss_dssp -----SHHH-----------------HHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHHCSSCEEECCHHHHHHH
T ss_pred -----cccc-----------------HHHHHHHHHHHHHHHHCCcEEEEEcCCHHHHHHHhccCCCCCEEEECHHHHHHH
Confidence 2321 357999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHcCCCCcccccccCCcceeeEEeCC
Q psy16215 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFP 321 (1041)
Q Consensus 242 L~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aRGiD~epV~p~~ppKSIssErTF~ 321 (1041)
|+++||++|||||++++++ |+++||+|++||+++|+..|+++||...|.++|+.++|+|.++|.+.. +|||+++++|+
T Consensus 175 L~~lpv~~l~GiG~~~~~~-L~~~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~ 252 (352)
T 1jx4_A 175 IRELDIADVPGIGNITAEK-LKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRV-RKSIGRIVTMK 252 (352)
T ss_dssp HHHSBGGGSTTCCHHHHHH-HHTTTCCBGGGGGSSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCCCC-CCEEEEEEEEE
T ss_pred HHhCCCCcccccCHHHHHH-HHHcCCchHHHHHCCCHHHHHHhcChhHHHHHHHHhCCCCCCCccCCC-CceEEeeeecC
Confidence 9999999999999999998 899999999999999999999999954499999999999999999888 99999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhchhccCceeeEEEEEEEEcCCCCceeEEEEEeC--CCCcHHHHHHHHHHHHH
Q psy16215 322 GKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIAL--ASYKLQDIVEVSMQVIN 399 (1041)
Q Consensus 322 ~r~dLtd~eeL~~~L~~LaeELaeRLRr~~~~ngr~artLTLkLR~sd~g~~~s~SRSl~L--pT~Dae~L~~~A~~LL~ 399 (1041)
. ++.+.+++..+|..|+++|+.||++ . .+++|+|++++.++ ...+++.++ |+++...|++ +..+|+
T Consensus 253 ~--~~~~~~~l~~~l~~l~~~l~~rL~~-----~-~~~~v~l~l~~~~~---~~~~~~~~l~~pt~~~~~l~~-a~~ll~ 320 (352)
T 1jx4_A 253 R--NSRNLEEIKPYLFRAIEESYYKLDK-----R-IPKAIHVVAVTEDL---DIVSRGRTFPHGISKETAYSE-SVKLLQ 320 (352)
T ss_dssp E--EECCHHHHHHHHHHHHHHHHHHHTT-----C-CEEEEEEEEEETTS---CEEEEEEECSSCCCHHHHHHH-HHHHHH
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHHHHH-----h-cCCEEEEEEEECCC---CcceeEEecCCCCCCHHHHHH-HHHHHH
Confidence 6 6899999999999999999999997 3 89999999999987 345555555 6788999999 999999
Q ss_pred HhccCCCCCCCCCCEEEEEEEEcCCCCCCCCcchhhcCC
Q psy16215 400 KTNSAPPISDLTPPLLFLGLSASKFSPLGSHPSIQQFFK 438 (1041)
Q Consensus 400 rL~~~~~~~a~~~pVRlIGVsLSdLvp~~~q~sI~DLFd 438 (1041)
+++.. ...+||++||++++|.+. . .|.+||+
T Consensus 321 ~~~~~-----~~~~vr~lgv~~~~l~~~-~--~q~~LF~ 351 (352)
T 1jx4_A 321 KILEE-----DERKIRRIGVRFSKFIEA-I--GLDKFFD 351 (352)
T ss_dssp HHHHH-----CCSCEEEEEEEEEEEC-------------
T ss_pred HHHhc-----CCCCEEEEEEEEeCCCCc-c--ccccccc
Confidence 98730 146899999999999886 2 4788885
No 4
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.8e-74 Score=645.55 Aligned_cols=343 Identities=23% Similarity=0.346 Sum_probs=221.0
Q ss_pred CcEEEEEeCCchhHHhHhhhCCCCCCCcEEEEecCC--CCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCC
Q psy16215 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNT--WKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSV 80 (1041)
Q Consensus 3 ~RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n~--~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~ 80 (1041)
.|+|+||||||||||||++++|+|+++||||+++++ ..+|+|+||||+||++||++|||+++|+++||++++++
T Consensus 2 ~R~I~hiD~d~FyasvE~~~~P~L~~kPv~V~~~~d~~~~~g~v~a~syeAr~~GV~~gm~~~~A~~lcP~l~~~~---- 77 (356)
T 4dez_A 2 TKWVLHVDLDQFLASVELRRRPDLRGQPVIVGGSGDPSEPRKVVTCASYEAREFGVHAGMPLRAAARRCPDATFLP---- 77 (356)
T ss_dssp CEEEEEEEETTHHHHHHHHHCGGGTTSCEEEEEC------CCEEEEECHHHHTTTCCTTSBHHHHHHHCTTCEEEE----
T ss_pred ceEEEEEcCCcHHHHHHhhhCccccCCeEEEEeCCCCCCCceEEEEECHHHHHhCCCCCCcHHHHHHhCCCeEEEC----
Confidence 599999999999999999999999999999998754 24689999999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhhccccccccccccccccCCCCCCchhhhhhcc
Q psy16215 81 RGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGV 160 (1041)
Q Consensus 81 ~~k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~~~~~~~~~L~~~~~~g~~~~~~~e~~r~~g~ 160 (1041)
+|++.|+++|++|+++|.+|+|.||++||||+|||+|+...
T Consensus 78 ---~~~~~Y~~~s~~v~~il~~~~p~ve~~SiDEafld~t~~~~------------------------------------ 118 (356)
T 4dez_A 78 ---SDPAAYDEASEQVMGLLRDLGHPLEVWGWDEAYLGADLPDE------------------------------------ 118 (356)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTSSCEEEETTTEEEEEEECCTT------------------------------------
T ss_pred ---CcHHHHHHHHHHHHHHhhhcCCceeecCcchhheecccccC------------------------------------
Confidence 89999999999999999999999999999999999986421
Q ss_pred hhhcccccCCCcccccccchhHHhhhHHHHHHHHHHHHHHhhhCCceeEEEeCCHHHHHHhccCCCCCceEEeccchHHH
Q psy16215 161 MEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240 (1041)
Q Consensus 161 ~~W~~~LFg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~elGlt~SVGIA~NKlLAKLAS~~aKPnGqtvl~p~~v~~ 240 (1041)
+. +..+|++||++|++++|++||||||+||+|||||++++||+|++++.++++.+
T Consensus 119 --------~~-----------------~~~~a~~ir~~i~~~~gl~~siGIa~nk~lAKlAs~~~Kp~g~~~i~~~~~~~ 173 (356)
T 4dez_A 119 --------SD-----------------PVEVAERIRTVVAAETGLSCSVGISDNKQRAKVATGFAKPAGIYVLTEANWMT 173 (356)
T ss_dssp --------CC-----------------HHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCTTTHHH
T ss_pred --------CC-----------------HHHHHHHHHHHHHHHhCCccccchhccHHHHHHHHHHhhhcCcccccchhhhh
Confidence 00 24689999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHcCCCCcccccc-cCCcceeeEEe
Q psy16215 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR-LVSKSIGCCKR 319 (1041)
Q Consensus 241 fL~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aRGiD~epV~p~-~ppKSIssErT 319 (1041)
||+++||++|||||++++++ |+++||+|++||+++|+..|+++||...|.+||++++|+|.++|.+. ..+|||+++++
T Consensus 174 ~L~~lpv~~l~GiG~~~~~~-L~~~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~ksi~~~~t 252 (356)
T 4dez_A 174 VMGDRPPDALWGVGPKTTKK-LAAMGITTVADLAVTDPSVLTTAFGPSTGLWLLLLAKGGGDTEVSSEPWVPRSRSHVVT 252 (356)
T ss_dssp HHTTSCGGGSTTCCHHHHHH-HHHTTCCSHHHHHTSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCC-------------
T ss_pred hhhcCcHHHHcCCchhHHHH-HHHcCCCeecccccCCHHHHHHHhCChHHHHHHHHHcCCCccccccccccccccccccc
Confidence 99999999999999999998 89999999999999999999999997789999999999999999875 56899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhchhccCceeeEEEEEEEEcCCCCceeEEEEEeCCCCcHHHHHHHHHHHHH
Q psy16215 320 FPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVIN 399 (1041)
Q Consensus 320 F~~r~dLtd~eeL~~~L~~LaeELaeRLRr~~~~ngr~artLTLkLR~sd~g~~~s~SRSl~LpT~Dae~L~~~A~~LL~ 399 (1041)
|+. ++.+.+++..+|..|+.+++.||+++ ++.|++|+|++++.+| ...+.+++++.|+++...|++.|..+|+
T Consensus 253 f~~--~~~~~~~l~~~l~~la~~~~~rLr~~----~~~~~~l~v~ir~~~f-~~~t~~~~l~~pt~d~~~i~~~a~~ll~ 325 (356)
T 4dez_A 253 FPQ--DLTERREMDSAVRDLALQTLAEIVEQ----GRIVTRVAVTVRTSTF-YTRTKIRKLPAPSTDAGQIVDTALAVLD 325 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCC--cCCCHHHHHHHHHHHHHHHHHHHHHc----CCceeEEEEEEEeCCC-eEEEEEEECCcccCCHHHHHHHHHHHHH
Confidence 996 68999999999999999999999998 9999999999999987 2334445555678899999999999999
Q ss_pred HhccCCCCCCCCCCEEEEEEEEcCCCCCC
Q psy16215 400 KTNSAPPISDLTPPLLFLGLSASKFSPLG 428 (1041)
Q Consensus 400 rL~~~~~~~a~~~pVRlIGVsLSdLvp~~ 428 (1041)
+++. ..+||+|||++++|.+..
T Consensus 326 ~~~~-------~~~vRliGV~ls~l~d~~ 347 (356)
T 4dez_A 326 QFEL-------DRPVRLLGVRLELAMDDV 347 (356)
T ss_dssp -----------------------------
T ss_pred hccC-------CCCEEEEEEEECCCCCCC
Confidence 9873 568999999999997643
No 5
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=1.7e-72 Score=629.06 Aligned_cols=347 Identities=22% Similarity=0.342 Sum_probs=308.3
Q ss_pred cEEEEEeCCchhHHhHhhhCCCCCCCcEEEEec-C-CCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCCC
Q psy16215 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQY-N-TWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR 81 (1041)
Q Consensus 4 RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~-n-~~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~~ 81 (1041)
|+|+||||||||||||++++|+|+++||||++. . .+.+|+|+||||+||++||++||++++|+++||++++++
T Consensus 1 r~i~hiD~d~FyasvE~~~~p~l~~~Pv~V~~~~~~~~~~g~V~a~syeAr~~GV~~gm~~~~A~~lcP~l~~~~----- 75 (354)
T 3bq0_A 1 MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVP----- 75 (354)
T ss_dssp CCEEEEEETTHHHHHHHHHCGGGTTSCEEEEECCC---CCCEEEEECHHHHHTTCCTTCBHHHHHHHCTTCEEEE-----
T ss_pred CEEEEEecChHHHHHHHHhCccccCCcEEEEcCCCCCCCCeEEEECCHHHHHhCCCCCCcHHHHHHHCCCeEEEC-----
Confidence 789999999999999999999999999999982 1 024689999999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhhccccccccccccccccCCCCCCchhhhhhcch
Q psy16215 82 GKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM 161 (1041)
Q Consensus 82 ~k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~~~~~~~~~L~~~~~~g~~~~~~~e~~r~~g~~ 161 (1041)
+|++.|+++|++|++++.+|+|.||++||||+|||||++.+ +
T Consensus 76 --~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~----------------------------------~-- 117 (354)
T 3bq0_A 76 --MRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVE----------------------------------G-- 117 (354)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTT----------------------------------T--
T ss_pred --CCHHHHHHHHHHHHHHHHHhCCCEEEecCCeeEEecCcchh----------------------------------h--
Confidence 89999999999999999999999999999999999998742 0
Q ss_pred hhcccccCCCcccccccchhHHhhhHHHHHHHHHHHHHHhhhCCceeEEEeCCHHHHHHhccCCCCCceEEeccchHHHh
Q psy16215 162 EWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSML 241 (1041)
Q Consensus 162 ~W~~~LFg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~elGlt~SVGIA~NKlLAKLAS~~aKPnGqtvl~p~~v~~f 241 (1041)
+|++ +..+|++||++|++++|+|||+|||+||++||||++++||+|+++++++++.+|
T Consensus 118 -----~~~~-----------------~~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~~~~~~ 175 (354)
T 3bq0_A 118 -----NFEN-----------------GIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDF 175 (354)
T ss_dssp -----CHHH-----------------HHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSSCEEECCGGGHHHH
T ss_pred -----ccCC-----------------HHHHHHHHHHHHHHHHCCcEEeeeccCHHHHHHHhccCCCCCEEEECHHHHHHH
Confidence 1221 357899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHcCCCCcccccccCCcceeeEEeCC
Q psy16215 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFP 321 (1041)
Q Consensus 242 L~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aRGiD~epV~p~~ppKSIssErTF~ 321 (1041)
|+++||++|||||++++++ |+++||+|++||+++|+..|+++||...|.++|+.++|+|.++|.+.. +|||+++++|+
T Consensus 176 L~~lpv~~l~GiG~~~~~~-L~~~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~ 253 (354)
T 3bq0_A 176 LNELDIDEIPGIGSVLARR-LNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKS-KIPHGRYLTLP 253 (354)
T ss_dssp HHHCBSTTSTTCCHHHHHH-HTTTTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSEE-CCCEEEEEEEE
T ss_pred HHhCCcccccCcCHHHHHH-HHHcCCccHHHHhcCCHHHHHHHHCHHHHHHHHHHhCCCCCCCCcCCC-CceeEEeEeCC
Confidence 9999999999999999998 899999999999999999999999954499999999999999999888 99999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhchhccCceeeEEEEEEEEcCCCCceeEEEEEeC--CCCcHHHHHHHHHHHHH
Q psy16215 322 GKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIAL--ASYKLQDIVEVSMQVIN 399 (1041)
Q Consensus 322 ~r~dLtd~eeL~~~L~~LaeELaeRLRr~~~~ngr~artLTLkLR~sd~g~~~s~SRSl~L--pT~Dae~L~~~A~~LL~ 399 (1041)
. ++.+.+++..+|..|+++|+.||++ .+++|+|++++.++ ...+++.++ |+++...|++ +..+|+
T Consensus 254 ~--~~~~~~~l~~~l~~l~~~l~~rL~~-------~~~~v~l~~~~~~~---~~~~~~~~l~~pt~~~~~i~~-~~~ll~ 320 (354)
T 3bq0_A 254 Y--NTRDVKVILPYLKKAINEAYNKVNG-------IPMRITVIAIMEDL---DILSKGKKFKHGISIDNAYKV-AEDLLR 320 (354)
T ss_dssp E--EECCHHHHHHHHHHHHHHHHTTTSS-------EEEEEEEEEEETTS---CEEEEEEECSSCCCHHHHHHH-HHHHHH
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHHHHh-------hCCEEEEEEEeCCC---CcceEEEECCCccCCHHHHHH-HHHHHH
Confidence 6 6889999999999999999999974 89999999999986 345555555 6788999999 999999
Q ss_pred HhccCCCCCCCCC-C-EEEEEEEEcCCCCCCCCcchhhcCC
Q psy16215 400 KTNSAPPISDLTP-P-LLFLGLSASKFSPLGSHPSIQQFFK 438 (1041)
Q Consensus 400 rL~~~~~~~a~~~-p-VRlIGVsLSdLvp~~~q~sI~DLFd 438 (1041)
+++. ... + ||+|||++++|.+... .|.+||+
T Consensus 321 ~~~~------~~~~~~vr~lgv~~~~l~~~~~--~q~~LF~ 353 (354)
T 3bq0_A 321 ELLV------RDKRRNVRRIGVKLDNIIINKT--NLSDFFD 353 (354)
T ss_dssp HHTT------SCSSCCEEEEEEEEEEEECC-----------
T ss_pred HHhc------cCCCCceEEEEEEEecCCCCCc--ccccccc
Confidence 9874 134 8 9999999999988653 5788885
No 6
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=2.2e-72 Score=631.43 Aligned_cols=349 Identities=23% Similarity=0.366 Sum_probs=308.9
Q ss_pred EEEEEeCCchhHHhHhhhCCCCCCCcEEEEecC--CCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCCCC
Q psy16215 5 IIALIDMDCFYCQVECKLNPSLHGKPLAVVQYN--TWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRG 82 (1041)
Q Consensus 5 vI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n--~~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~~~ 82 (1041)
+|+||||||||||||++++|+|+++||||++++ +..+|+|+||||+||++||++|||+++|+++||++++++
T Consensus 2 ~i~hiD~d~FyasvE~~~~P~L~~~Pv~V~~~~~~~~~~g~V~a~sy~Ar~~GV~~gm~~~~A~~lcP~l~~~~------ 75 (362)
T 4f4y_A 2 IVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVP------ 75 (362)
T ss_dssp CEEEEECTTHHHHHHHHHCGGGTTSCEEEEEECSSSSSCEEEEEECHHHHHTTCCTTCBHHHHHHHCTTSEEEE------
T ss_pred EEEEEecCCHHHHHHhHhCccccCCeEEEecCCCCCCCCeEEEECCHHHHHcCCCCCCcHHHHHHHCCCeEEEC------
Confidence 799999999999999999999999999999863 124689999999999999999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhhccccccccccccccccCCCCCCchhhhhhcchh
Q psy16215 83 KADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVME 162 (1041)
Q Consensus 83 k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~~~~~~~~~L~~~~~~g~~~~~~~e~~r~~g~~~ 162 (1041)
+|++.|+++|++|+++|.+|+|.||++||||+|||||++.+.
T Consensus 76 -~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDEa~LDvt~~~~~------------------------------------- 117 (362)
T 4f4y_A 76 -MRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEG------------------------------------- 117 (362)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTT-------------------------------------
T ss_pred -CCHHHHHHHHHHHHHHHHHhCCCEEEecCceEEEecCCcccc-------------------------------------
Confidence 899999999999999999999999999999999999987420
Q ss_pred hcccccCCCcccccccchhHHhhhHHHHHHHHHHHHHHhhhCCceeEEEeCCHHHHHHhccCCCCCceEEeccchHHHhh
Q psy16215 163 WLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242 (1041)
Q Consensus 163 W~~~LFg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~elGlt~SVGIA~NKlLAKLAS~~aKPnGqtvl~p~~v~~fL 242 (1041)
+|++ +..+|++||++|++++|||||+|||+||++||||++++||+|+++++++++.+||
T Consensus 118 ----~~~~-----------------~~~~a~~ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~~~~~~~~~~~L 176 (362)
T 4f4y_A 118 ----NFEN-----------------GIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFL 176 (362)
T ss_dssp ----CHHH-----------------HHHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHHTSCSSCEEECCTTTHHHHH
T ss_pred ----ccCC-----------------HHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhcccCCCEEEECHHHHHHHH
Confidence 1221 3578999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHcCCCCcccccccCCcceeeEEeCCC
Q psy16215 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPG 322 (1041)
Q Consensus 243 ~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aRGiD~epV~p~~ppKSIssErTF~~ 322 (1041)
+++||++|||||++++++ |+++||+|++||+++|+..|+++||.+.|.+||+.++|+|.++|.+..+ |||+.+++|+.
T Consensus 177 ~~lpv~~l~GiG~~~~~~-L~~~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~-ksi~~~~tf~~ 254 (362)
T 4f4y_A 177 NELDIDEIPGIGSVLARR-LNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQDEYNEPIRTRVR-KSIGRYLTLPY 254 (362)
T ss_dssp HTCBSTTSTTCCSTTHHH-HHHTTCCBGGGGTTSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCCCCCC-CEEEEEEEEEE
T ss_pred HhCChhhccCCCHHHHHH-HHHcCCChHHHHhcCCHHHHHHHhChHHHHHHHHHhcCCCCCcCccCCC-cceEEEEecCC
Confidence 999999999999999998 8999999999999999999999999778999999999999999998877 99999999996
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhchhccCceeeEEEEEEEEcCCCCceeEEEEEeC--CCCcHHHHHHHHHHHHHH
Q psy16215 323 KTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIAL--ASYKLQDIVEVSMQVINK 400 (1041)
Q Consensus 323 r~dLtd~eeL~~~L~~LaeELaeRLRr~~~~ngr~artLTLkLR~sd~g~~~s~SRSl~L--pT~Dae~L~~~A~~LL~r 400 (1041)
++.+.+++..+|..|+++|+.||++ .+++|+|++++.++ ...+++.++ | ++...|++.+..+|++
T Consensus 255 --~~~~~~~l~~~l~~l~~~l~~rLr~-------~~~~v~l~i~~~~~---~~~t~s~~l~~p-~d~~~i~~~a~~ll~~ 321 (362)
T 4f4y_A 255 --NTRDVKVILPYLKKAINEAYNKVNG-------IPMRITVIAIMEDL---DILSKGKKFKHG-ISIDNAYKVAEDLLRE 321 (362)
T ss_dssp --EECCHHHHHHHHHHHHHHHHHHCSS-------EEEEEEEEEEETTS---CEEEEEEECSSC-CCHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHh-------CCCEEEEEEEECCC---cEEEEEEECCCC-CCHHHHHHHHHHHHHH
Confidence 6889999999999999999999984 89999999999987 344555544 6 8899999999999999
Q ss_pred hccCCCCCCCCCC-EEEEEEEEcCCCCCCCCcchhhcCCCC
Q psy16215 401 TNSAPPISDLTPP-LLFLGLSASKFSPLGSHPSIQQFFKPQ 440 (1041)
Q Consensus 401 L~~~~~~~a~~~p-VRlIGVsLSdLvp~~~q~sI~DLFd~~ 440 (1041)
++.. ...+ ||++||++++|.+... .|.+||+-.
T Consensus 322 ~~~~-----~~~~~vr~lGV~~~~L~~~~~--~q~~~~~~~ 355 (362)
T 4f4y_A 322 LLVR-----DKRRNVRRIGVKLDNIIINKT--NLSDFFDIG 355 (362)
T ss_dssp HTTS-----SCSCCEEEEEEEEEEEEC--------------
T ss_pred HHhh-----cCCccEEEEEEEEeccccCCc--ccccccccC
Confidence 9830 1457 9999999999987654 578888755
No 7
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=100.00 E-value=7.2e-72 Score=650.00 Aligned_cols=349 Identities=24% Similarity=0.389 Sum_probs=314.5
Q ss_pred CcEEEEEeCCchhHHhHhhhCCCCCCCcEEEEecCCC-------------------------------------------
Q psy16215 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTW------------------------------------------- 39 (1041)
Q Consensus 3 ~RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n~~------------------------------------------- 39 (1041)
.|+|+||||||||||||++.+|+|+|+||||++..+.
T Consensus 87 ~r~I~HvDmd~FfaSve~~~~P~LrgkPvaV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 166 (504)
T 3gqc_A 87 QSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQ 166 (504)
T ss_dssp CCCEEEEEETTHHHHHHTTTCTTTTTSCEEECSSCSSCBCCCCTTBCHHHHHHHHHTTTTCC------------------
T ss_pred CcEEEEEeccchhhhhhhccCccccCCCeEEEecCCCCccccccccchhhhhhhhhhhhcccccccccccccccccchhh
Confidence 6999999999999999999999999999999964210
Q ss_pred CCcE--------EEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcCCcEEEec
Q psy16215 40 KGGG--------IIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERAS 111 (1041)
Q Consensus 40 ~~g~--------VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~~~k~Dld~Yr~aS~kI~eIL~~fSP~VE~aS 111 (1041)
++|+ |+||||+||++||++||++++|+++||++++++ +||+.|+++|++|+++|.+|+|.||++|
T Consensus 167 ~~Gv~av~s~s~V~aaSyeAR~~GVrsGMp~~~A~~lcP~livv~-------~d~~~Y~~~S~~i~~il~~~tp~VE~~S 239 (504)
T 3gqc_A 167 ANGIDSVLSRAEIASCSYEARQLGIKNGMFFGHAKQLCPNLQAVP-------YDFHAYKEVAQTLYETLASYTHNIEAVS 239 (504)
T ss_dssp ---CGGGBCCCBCSEECHHHHTTTCCTTCBHHHHHHHCTTCEEEC-------CCHHHHHHHHHHHHHHHHTTCSCEEEEE
T ss_pred ccccceeccCCEEEECCHHHHHcCCCCCCcHHHHHHhCCCcEEEC-------CCHHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 1233 889999999999999999999999999999987 8999999999999999999999999999
Q ss_pred cceEEEEcchhHHHHHhhccccccccccccccccCCCCCCchhhhhhcchhhcccccCCCcccccccchhHHhhhHHHHH
Q psy16215 112 IDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVI 191 (1041)
Q Consensus 112 IDEafLDLT~~v~~~L~~~~~~~~~~L~~~~~~g~~~~~~~e~~r~~g~~~W~~~LFg~~d~p~v~~~~~~~~L~~g~~I 191 (1041)
|||+|||||++.. +|+.. +..+
T Consensus 240 iDEafLDvtg~~~------------------------------------------l~g~~----------------~~~l 261 (504)
T 3gqc_A 240 CDEALVDITEILA------------------------------------------ETKLT----------------PDEF 261 (504)
T ss_dssp TTEEEEECHHHHH------------------------------------------HHCCC----------------HHHH
T ss_pred CCeEEEeccchHh------------------------------------------hcCCC----------------HHHH
Confidence 9999999999864 23311 2578
Q ss_pred HHHHHHHHHhhhCCceeEEEeCCHHHHHHhccCCCCCceEEeccchHHHhhhcCCccccccCCHHHHHHHHHhCCCccch
Q psy16215 192 VEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTML 271 (1041)
Q Consensus 192 A~~IR~~I~~elGlt~SVGIA~NKlLAKLAS~~aKPnGqtvl~p~~v~~fL~~LPI~kIpGIG~K~a~rLL~~LGI~TIG 271 (1041)
|++||++|++++||+||||||+||+|||||++++||+|+++|.++++.+||+++||++|||||++++++ |+++||+|++
T Consensus 262 a~~Ir~~I~~~tGlt~SvGIa~nk~LAKlAs~~~KP~G~~vl~~~~~~~~L~~LPV~~l~GIG~~t~~k-L~~lGI~Tig 340 (504)
T 3gqc_A 262 ANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESK-LASLGIKTCG 340 (504)
T ss_dssp HHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCGGGHHHHHHHSBGGGSTTCCHHHHHH-HHHTTCCBHH
T ss_pred HHHHHHHHHHHhCCcEEEEEeCCHHHHHHHHhhCccCCEEEECHHHHHHHHhcCChhHhhCcCHHHHHH-HHHcCCCcHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred hhhhCCHHHHHHHhhhhhHHHHHHHHcCCCCcccccccCCcceeeEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhch
Q psy16215 272 ELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDL 351 (1041)
Q Consensus 272 DLa~Lp~~~L~krFG~k~G~~L~~~aRGiD~epV~p~~ppKSIssErTF~~r~dLtd~eeL~~~L~~LaeELaeRLRr~~ 351 (1041)
||+++|+..|+++||...|.+||+.|+|+|.++|.+..++|||+.+++|+. ++.+.+++..+|..|+++|+.||+++
T Consensus 341 DLa~~~~~~L~~~fG~~~g~~L~~~a~GiD~~pV~~~~~~KSi~~e~tf~~--d~~~~~~l~~~L~~La~~l~~rLr~~- 417 (504)
T 3gqc_A 341 DLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI--RFTQPKEAEAFLLSLSEEIQRRLEAT- 417 (504)
T ss_dssp HHTTSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCCCCCCCEEEEECSSC--CCCSHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHhccHHHHHHhhChhHHHHHHHHhcCCCccccccccCCcceeeeeccCC--CCCCHHHHHHHHHHHHHHHHHHHHHc-
Confidence 999999999999999767999999999999999999888999999999996 68999999999999999999999998
Q ss_pred hccCceeeEEEEEEEEcC---------C---CCceeEEEEEeC--CCCcHHHHHHHHHHHHHHhccCCCCCCCCCCEEEE
Q psy16215 352 TLNKRRAQLLTVSFTQET---------D---GKVNSCSRSIAL--ASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFL 417 (1041)
Q Consensus 352 ~~ngr~artLTLkLR~sd---------~---g~~~s~SRSl~L--pT~Dae~L~~~A~~LL~rL~~~~~~~a~~~pVRlI 417 (1041)
++.+++|+|+|++.. | +.+.+.+++.++ |+++...|++.|..+|++++. ...+||+|
T Consensus 418 ---~~~~~~vtLkl~~r~~d~~~~t~~f~~~g~~~~~trs~tL~~pT~d~~~I~~~A~~Ll~~~~~------~~~~vRll 488 (504)
T 3gqc_A 418 ---GMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKL------NISDMRGV 488 (504)
T ss_dssp ---TEEEEEEEEEEEEECTTSCSBCSSTTCCCSEEEEEEEEEEEEEECCHHHHHHHHHHHHHTSCC------CGGGEEEE
T ss_pred ---CCceeEEEEEEEEecccccccccccccCCCcccceeEeecCCCcCCHHHHHHHHHHHHHHhcC------CCCCeEEE
Confidence 999999999998742 1 122445665555 689999999999999999873 14589999
Q ss_pred EEEEcCCCCCCC
Q psy16215 418 GLSASKFSPLGS 429 (1041)
Q Consensus 418 GVsLSdLvp~~~ 429 (1041)
||++++|.+...
T Consensus 489 GV~~s~L~~~~g 500 (504)
T 3gqc_A 489 GIHVNQLVPTNL 500 (504)
T ss_dssp EEEEEEEEECC-
T ss_pred EEEEcCcccCCC
Confidence 999999987764
No 8
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=100.00 E-value=5.7e-72 Score=653.73 Aligned_cols=414 Identities=22% Similarity=0.343 Sum_probs=336.1
Q ss_pred CCcEEEEEeCCchhHHhHhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeec----
Q psy16215 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRV---- 77 (1041)
Q Consensus 2 ~~RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n~~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~V---- 77 (1041)
..|+|+||||||||||||++++|+|+++||||+|| ++|+||||+||++||++||++++|+++||+++++||
T Consensus 29 p~r~I~hiD~d~FyAsvE~~~~p~l~~~Pv~v~~~-----~~via~sy~AR~~GI~~~~~~~~A~~~CP~l~~v~~~v~~ 103 (520)
T 3mfi_A 29 SLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQW-----NSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVFK 103 (520)
T ss_dssp TTCCEEEEEETTHHHHHHHHHTTCCTTSCEEEEET-----TEEEEECHHHHTTTCCTTCBHHHHHTTCTTCEEEECEEEE
T ss_pred CCCEEEEEecccHHHHHHHHhCccccCCcEEEecC-----CEEEEeCHHHHHcCCCCCCcHHHHHHhCccceEeeeeeee
Confidence 35899999999999999999999999999999986 589999999999999999999999999999999864
Q ss_pred -----------------------cCCCCCCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhhcccc-
Q psy16215 78 -----------------------PSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI- 133 (1041)
Q Consensus 78 -----------------------P~~~~k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~~~~~- 133 (1041)
|..++|++|++|+++|++|+++|.+|+|.||++||||+|||||+.+..+|......
T Consensus 104 ~ge~~~~y~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~i~~il~~~~~~vE~~SIDEaflDlt~~~~~~l~~~~~~~ 183 (520)
T 3mfi_A 104 KGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALAIFKWACDLVERASIDEVFLDLGRICFNMLMFDNEYE 183 (520)
T ss_dssp TTCSCEECCTTCSTTCSCTTSCCCTTSEEEECHHHHHHHHHHHHHHHHHCSCEEEEETTEEEEECHHHHHHHHHHCSSCE
T ss_pred cccccccccccccccccccccccCcccccCCHHHHHHHHHHHHHHHHHhCCCeEEeccceEEEEcCcchhhccccccccc
Confidence 22334569999999999999999999999999999999999999986555310000
Q ss_pred c---------cccccccccccCCCCCCc---hhhhhhcchhhcccccCCCcccccccchhHHhhhHHHHHHHHHHHHHHh
Q psy16215 134 A---------ASQLSNTFVVGFGPDNND---EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 201 (1041)
Q Consensus 134 ~---------~~~L~~~~~~g~~~~~~~---e~~r~~g~~~W~~~LFg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~ 201 (1041)
. ...|+..++.|....... .+...+. ..|.+++|++.+.+. ..+|+++.+..+..+|++||++|++
T Consensus 184 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~p~~~~~~~~-~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ia~~IR~~I~~ 261 (520)
T 3mfi_A 184 LTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKS-LKFEGDVFNPEGRDL-ITDWDDVILALGSQVCKGIRDSIKD 261 (520)
T ss_dssp EETTEEHHHHTHHHHHHHHHTCCCTTSEEECCCGGGGG-CCCCSEECCTTCCCS-CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhccccccccccccccccccchhc-ccccccccccccccc-cccccccccchHHHHHHHHHHHHHH
Confidence 0 001111111111100000 0000000 123345666543332 2378999999999999999999999
Q ss_pred hhCCceeEEEeCCHHHHHHhccCCCCCceEEeccchHHHhhhc--CCccccccCCHHHHHHHHHhC-CC---ccc-----
Q psy16215 202 KTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN--LSIKKVRHLGGKLGDEVVETL-QC---STM----- 270 (1041)
Q Consensus 202 elGlt~SVGIA~NKlLAKLAS~~aKPnGqtvl~p~~v~~fL~~--LPI~kIpGIG~K~a~rLL~~L-GI---~TI----- 270 (1041)
++|||||||||+||+|||||++++||+||++|.++++.+||++ +||++|||||++++++ |+.+ || +|+
T Consensus 262 ~tGlt~SvGIa~nK~LAKlAs~~~KP~G~~vi~~~~~~~fL~~~~lPV~~l~GIG~~t~~~-L~~llGI~~~~ti~~i~~ 340 (520)
T 3mfi_A 262 ILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKE-LIDVLDLPHENSIKHIRE 340 (520)
T ss_dssp HHCCCEEEEEESSHHHHHHHHTTSCSSEEEECCGGGHHHHHTSSSCCGGGSTTCSSHHHHH-HHHHTTCCSSSHHHHHHH
T ss_pred HhCCcEEEEEeCCHHHHHHHhcccCCCCeEEcChHHHHHHhhccCCcHHHhcCCCHHHHHH-HHHhcCCCcccchhhhhh
Confidence 9999999999999999999999999999999999999999998 9999999999999998 6887 99 664
Q ss_pred ------hhhhhCCHHHHHHHhhh------------hhHHHHHHHHcCCCCcccccccCCcceeeEEeCCCCCCCCCHHHH
Q psy16215 271 ------LELEKFSLKQLQSHFEE------------KTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDV 332 (1041)
Q Consensus 271 ------GDLa~Lp~~~L~krFG~------------k~G~~L~~~aRGiD~epV~p~~ppKSIssErTF~~r~dLtd~eeL 332 (1041)
+||++++...|+++||. +.|.+||++|+|+|.++|.+..++|||+++++|+.+ ++.+.+++
T Consensus 341 l~~~t~~dL~~~~~~~L~~~fG~~~~~~~d~~~~g~~g~~L~~~arGid~~~V~~~~~~KSi~~~~tf~~~-~i~~~~~l 419 (520)
T 3mfi_A 341 TWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKNLRGK-SCNSIVDC 419 (520)
T ss_dssp HSCSCHHHHHHHHHHHHHSTTCC---CCCCTTCHHHHHHHHHHHTTTCCCCCCCCCCSCSCEEEEEECCTT-TTCSHHHH
T ss_pred ccCCCHHHHHhcCHHHHHHhcCccccccccchhhhHHHHHHHHHhCCCCCCCCCCCCCCCceeeEEEcCCC-CcCCHHHH
Confidence 88999999999999984 689999999999999999998899999999999962 37899999
Q ss_pred HHHHHHHHHHHHHHHHhchhc--cCceeeEEEEEEEEcCCCCceeEEEEEeC--CC--CcHHHHHHHHHHHHHHhccCCC
Q psy16215 333 SHWIQELADEVCERLEDDLTL--NKRRAQLLTVSFTQETDGKVNSCSRSIAL--AS--YKLQDIVEVSMQVINKTNSAPP 406 (1041)
Q Consensus 333 ~~~L~~LaeELaeRLRr~~~~--ngr~artLTLkLR~sd~g~~~s~SRSl~L--pT--~Dae~L~~~A~~LL~rL~~~~~ 406 (1041)
..+|..|+++|+.||++...+ .++.|++|+|++++.++ .+.+|+.++ |+ ++...|++.|..||++++...
T Consensus 420 ~~~L~~la~~l~~rLr~~~~~~~~~~~~rtvtl~ir~~df---~~~trs~~l~~pt~~~~~~~I~~~a~~Ll~~~~~~~- 495 (520)
T 3mfi_A 420 ISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSY---EVYRKSGPVAYKGINFQSHELLKVGIKFVTDLDIKG- 495 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEECTTC---CEEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhcccccccceeeeEEEEEEEeCCC---CcceEEEECCCCCccCCHHHHHHHHHHHHHHHhhhc-
Confidence 999999999999999986111 14899999999999887 356666666 56 778999999999999998410
Q ss_pred CCCCCCCEEEEEEEEcCCCCCC
Q psy16215 407 ISDLTPPLLFLGLSASKFSPLG 428 (1041)
Q Consensus 407 ~~a~~~pVRlIGVsLSdLvp~~ 428 (1041)
......+||+|||++++|....
T Consensus 496 ~~~~~~~iRliGV~~s~Le~~~ 517 (520)
T 3mfi_A 496 KNKSYYPLTKLSMTITNFDIID 517 (520)
T ss_dssp TTSSCSSCSEEEEEEEEEEEEE
T ss_pred ccccCCceeEEEEEEeCCEecC
Confidence 0001368999999999997643
No 9
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=100.00 E-value=5.8e-71 Score=645.24 Aligned_cols=379 Identities=25% Similarity=0.366 Sum_probs=314.4
Q ss_pred CCcEEEEEeCCchhHHhHhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCCC
Q psy16215 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR 81 (1041)
Q Consensus 2 ~~RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n~~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~~ 81 (1041)
.+|+|+||||||||||||++++|+|+++||||+++ ++|+||||+||++||++|||+++|+++||+|++++
T Consensus 88 ~~r~I~hiDmDaFYAsvE~~~~P~Lr~kPvaV~~~-----~vV~t~nYeAR~~GVr~gMp~~~Ak~lCP~Lvvv~----- 157 (517)
T 3pzp_A 88 LSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSM-----SMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVP----- 157 (517)
T ss_dssp CSCCEEEEEESSHHHHHHHHHCGGGTTSCEEEEET-----TEEEEECHHHHTTTCCTTSCHHHHHHHCTTCEEEC-----
T ss_pred cCcEEEEEecCcHHHHHHHHhCccccCCcEEEecC-----CEEEecCHHHHHcCCCCCCcHHHHHHhCCceEEEC-----
Confidence 36899999999999999999999999999999985 58999999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhhccccccccccccccccCCCCC-----------
Q psy16215 82 GKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDN----------- 150 (1041)
Q Consensus 82 ~k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~~~~~~~~~L~~~~~~g~~~~~----------- 150 (1041)
+||+.|+++|++|+++|.+|+|.||++||||+|||||+++..++. ++... ..+..+.+...
T Consensus 158 --~d~~~Y~~~S~~v~~il~~ytp~ve~~SiDEafLDvT~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 229 (517)
T 3pzp_A 158 --PNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQN--WPEDK----RRYFIKMGSSVENDNPGKEVNK 229 (517)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCTTCBCCSSSEEEEETHHHHHHHTS--CCSTT----TEEECC----------------
T ss_pred --CCHHHHHHHHHHHHHHHHHcCCcEEEECCceEEEEcccccccccc--ccccc----cccccccccccccccccccccc
Confidence 899999999999999999999999999999999999999764431 11000 00000000000
Q ss_pred -------------Cc--------------hhhhhhcchhhc--ccccCCCcccccccchhHHhhhHHHHHHHHHHHHHHh
Q psy16215 151 -------------ND--------------EDARKAGVMEWL--GQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 201 (1041)
Q Consensus 151 -------------~~--------------e~~r~~g~~~W~--~~LFg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~ 201 (1041)
.+ +...... ..|. ..+||. .+..+|++||++|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lfg~----------------~~~~ia~~IR~~I~~ 292 (517)
T 3pzp_A 230 LSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNN-PQILQNSVVFGT----------------SAQEVVKEIRFRIEQ 292 (517)
T ss_dssp -----------------------------------------CCEEECCS----------------SHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccc-cccchhhhhcCC----------------hHHHHHHHHHHHHHH
Confidence 00 0000000 0000 113332 146899999999999
Q ss_pred hhCCceeEEEeCCHHHHHHhccCCCCCceEEeccc--hHHHhhhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHH
Q psy16215 202 KTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS--SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLK 279 (1041)
Q Consensus 202 elGlt~SVGIA~NKlLAKLAS~~aKPnGqtvl~p~--~v~~fL~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~ 279 (1041)
++|||||||||+||+|||||++++||+||++|.++ ++.+||++|||++|||||++++++ |+.+||+|++||+++ +.
T Consensus 293 ~tGlt~S~GIA~Nk~LAKlAs~~~KP~G~~vl~~~~~~v~~fL~~LPV~kl~GIG~~t~~~-L~~lGI~TigDL~~~-~~ 370 (517)
T 3pzp_A 293 KTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKM-LKALGIITCTELYQQ-RA 370 (517)
T ss_dssp HHSCCEEEEEESSHHHHHHHHHTTCSSCEEECCSSHHHHHHHHTTCBGGGSTTCCHHHHHH-HHHTTCCBHHHHHHH-HH
T ss_pred HhCCeEEEEEcCCHHHHHHHhCcCCCCCEEEecCChHHHHHHHhcCChhhhccccHHHHHH-HHHhCCCcHHHHHhh-HH
Confidence 99999999999999999999999999999999875 789999999999999999999887 899999999999998 47
Q ss_pred HHHHHhhhhhHHHHHHHHcCCCCcccccccCCcceeeEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhchhccCceee
Q psy16215 280 QLQSHFEEKTASWLYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQ 359 (1041)
Q Consensus 280 ~L~krFG~k~G~~L~~~aRGiD~epV~p~~ppKSIssErTF~~r~dLtd~eeL~~~L~~LaeELaeRLRr~~~~ngr~ar 359 (1041)
.|+++||...+.++|+.|+|+|.++|.+..++|||+.+++|+. +.+.+++..+|..|+++|+.||+++ ++.|+
T Consensus 371 ~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSi~~e~tf~~---~~~~e~l~~~l~~La~~l~~rLr~~----~~~~~ 443 (517)
T 3pzp_A 371 LLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSE---INKAEEQYSLCQELCSELAQDLQKE----RLKGR 443 (517)
T ss_dssp HHHHHSCHHHHHHHHHHHTTCCCCSCCCCCCCCCEEEEEEEEE---ECCHHHHHHHHHHHHHHHHHHHHTT----TCCBS
T ss_pred HHHHHhChHHHHHHHHHHcCCCcccccCCCCCccceeEEEccc---ccCHHHHHHHHHHHHHHHHHHHHHc----CCcee
Confidence 8999999766888999999999999999889999999999984 7789999999999999999999998 99999
Q ss_pred EEEEEEEEcCCCCceeEEEEEeC--CCCcHHHHHHHHHHHHHHhccCCCCCCCCCCEEEEEEEEcCCCCCCC
Q psy16215 360 LLTVSFTQETDGKVNSCSRSIAL--ASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPLGS 429 (1041)
Q Consensus 360 tLTLkLR~sd~g~~~s~SRSl~L--pT~Dae~L~~~A~~LL~rL~~~~~~~a~~~pVRlIGVsLSdLvp~~~ 429 (1041)
+|+|++++.+| ...+++.++ |+++..+|+..|..+|++.+.... ..+.+||+|||++++|.+...
T Consensus 444 ~vtlklk~~~f---~~~tr~~tl~~~t~~~~~i~~~a~~Ll~~~~~~~~--~~~~~iRllGV~~s~l~~~~~ 510 (517)
T 3pzp_A 444 TVTIKLKNVNF---EVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADF--PHPLRLRLMGVRISSFPNEED 510 (517)
T ss_dssp CEEEEEEETTS---CEEEECCCCSSCBCSHHHHHHHHHHHHHHHHHHHT--TSCCCEEEEEEEECCCCCCC-
T ss_pred EEEEEEEecCC---ceeeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhcc--CCCCcEEEEEEEecCCcChhh
Confidence 99999999987 456666666 578999999999999998762000 013469999999999987654
No 10
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=100.00 E-value=1.7e-71 Score=641.28 Aligned_cols=394 Identities=24% Similarity=0.315 Sum_probs=302.6
Q ss_pred CCcEEEEEeCCchhHHhHhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCCC
Q psy16215 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR 81 (1041)
Q Consensus 2 ~~RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n~~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~~ 81 (1041)
..|+|+||||||||||||++++|+|+++||||+++ ++|+||||+||++||++||++++|+++||+|++++
T Consensus 32 ~~r~i~hiD~D~FyAsvE~~~~P~L~~kPvaV~~~-----~~V~a~syeAR~~GV~~gm~~~~A~~lCP~lv~v~----- 101 (459)
T 1t94_A 32 LSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSM-----SMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVP----- 101 (459)
T ss_dssp CSCCEEEEEETTHHHHHHHHHCGGGTTSCEEEECS-----SCEEEECHHHHHTTCCTTCCHHHHHHHCTTCEEEC-----
T ss_pred CCceEEEEecccHHHHHHHhhCccccCCcEEEccC-----CeEEecCHHHHHcCCCCCCcHHHHHHHCCCeEEEC-----
Confidence 46899999999999999999999999999999874 68999999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhhccccccccc----c--ccccccCCCCCCchhh
Q psy16215 82 GKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQL----S--NTFVVGFGPDNNDEDA 155 (1041)
Q Consensus 82 ~k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~~~~~~~~~L----~--~~~~~g~~~~~~~e~~ 155 (1041)
+|++.|+++|++|+++|.+|+|.||++||||+|||||+++..++. ++.....+ . .....+++... +..
T Consensus 102 --~d~~~Y~~~S~~i~~il~~~~p~ve~~SiDEafLDvT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 175 (459)
T 1t94_A 102 --PNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQN--WPEDKRRYFIKMGSSVENDNPGKEVN-KLS- 175 (459)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCTTCEECSSSEEEEECHHHHHHHTT--CCGGGSEEECCC---CCCCCCCGGGG-GGS-
T ss_pred --CCHHHHHHHHHHHHHHHHHhCCceEEeecceEEEECchhHHHhhc--ccccccccccccccccccccccCccc-ccc-
Confidence 899999999999999999999999999999999999999764321 00000000 0 00000000000 000
Q ss_pred hhhcchhhcccccCCC------------------cccccccchhHHhh-hHHHHHHHHHHHHHHhhhCCceeEEEeCCHH
Q psy16215 156 RKAGVMEWLGQVYSDT------------------DTSLMENTEDFQEL-AIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 216 (1041)
Q Consensus 156 r~~g~~~W~~~LFg~~------------------d~p~v~~~~~~~~L-~~g~~IA~~IR~~I~~elGlt~SVGIA~NKl 216 (1041)
+.+..+...+|+.. ..+. ..+.++.+ ..+..+|++||++|++++|||||||||+||+
T Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fg~~~~~la~~IR~~I~~~~Glt~S~GIa~nk~ 251 (459)
T 1t94_A 176 --EHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQ--ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTM 251 (459)
T ss_dssp --TTTTTTGGGCC----------------------CCC--CCCCEEECCSSHHHHHHHHHHHHHHHHSCCEEEEEESSHH
T ss_pred --cccccccccccccccccccccccccccccccccccc--cccchhhccCCHHHHHHHHHHHHHHHhCCeEEEeecccHH
Confidence 00000000000000 0000 00000001 1267899999999999999999999999999
Q ss_pred HHHHhccCCCCCceEEecc--chHHHhhhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHH
Q psy16215 217 LAKLVCGLHKPQKQSILPQ--SSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294 (1041)
Q Consensus 217 LAKLAS~~aKPnGqtvl~p--~~v~~fL~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~ 294 (1041)
|||||++++||+||+++.+ +.+..||+++||++|||||++++++ |+.+||+|++||++++ ..|+++||...|.+||
T Consensus 252 LAKlAs~~~KP~g~~vl~~~~~~v~~fL~~lpv~~l~GiG~~~~~~-L~~lGI~T~gdL~~~~-~~L~~~fG~~~~~~l~ 329 (459)
T 1t94_A 252 LAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKM-LKALGIITCTELYQQR-ALLSLLFSETSWHYFL 329 (459)
T ss_dssp HHHHHHHHTTTTCEEECCSSHHHHHHHHTTCBGGGCTTSCHHHHHH-HHHTTCCBHHHHHHTH-HHHHHHSCHHHHHHHH
T ss_pred HHHHHhhccCCCCEEEecCcHHHHHHHHHcCCHHhcCCcCHHHHHH-HHHcCCCcHHHHHhhH-HHHHHHhChHhHHHHH
Confidence 9999999999999999998 4899999999999999999999987 7999999999999985 7899999977799999
Q ss_pred HHHcCCCCcccccccCCcceeeEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhchhccCceeeEEEEEEEEcCCCCce
Q psy16215 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVN 374 (1041)
Q Consensus 295 ~~aRGiD~epV~p~~ppKSIssErTF~~r~dLtd~eeL~~~L~~LaeELaeRLRr~~~~ngr~artLTLkLR~sd~g~~~ 374 (1041)
+.++|+|.++|.+..++|||+++++|+. +.+.+++..+|..|+++|+.||+++ ++.+++|+|++++.++ .
T Consensus 330 ~~a~G~d~~~v~~~~~~kSi~~~~tf~~---~~~~~~l~~~l~~L~~~l~~rL~~~----~~~~~~vtl~l~~~~~---~ 399 (459)
T 1t94_A 330 HISLGLGSTHLTRDGERKSMSVERTFSE---INKAEEQYSLCQELCSELAQDLQKE----RLKGRTVTIKLKNVNF---E 399 (459)
T ss_dssp HHHTTCCCSCC---C--CCEEEEEEEEE---ECCHHHHHHHHHHHHSSTTCCCC-------CCCSCEEEEEEETTC---C
T ss_pred HHHcCCCCcccCCCCCCcceeeeeecCC---CCCHHHHHHHHHHHHHHHHHHHHHh----CCCcceEEEEEEECCC---c
Confidence 9999999999999889999999999984 7899999999999999999999987 8999999999999887 4
Q ss_pred eEEEEEeC--CCCcHHHHHHHHHHHHHHhccCCCCCCCCCCEEEEEEEEcCCCCCCC
Q psy16215 375 SCSRSIAL--ASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPLGS 429 (1041)
Q Consensus 375 s~SRSl~L--pT~Dae~L~~~A~~LL~rL~~~~~~~a~~~pVRlIGVsLSdLvp~~~ 429 (1041)
..+|+.++ |+++...|++.+..+|++++... ...+.+||+|||++++|.+...
T Consensus 400 ~~srs~~l~~~t~~~~~i~~~a~~ll~~~~~~~--~~~~~~ir~lGv~~~~l~~~~~ 454 (459)
T 1t94_A 400 VKTRASTVSSVVSTAEEIFAIAKELLKTEIDAD--FPHPLRLRLMGVRISSFPNEED 454 (459)
T ss_dssp EEEECC-CCCCCCC--CHHHHHHHHHHHHHSSS--TTSCCCEEEEEEEECC------
T ss_pred eeeEEEECCCccCCHHHHHHHHHHHHHHHHhhc--cCCCCcEEEEEEEEccCcCccc
Confidence 55676666 57889999999999999987310 0124469999999999987654
No 11
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=100.00 E-value=5.2e-68 Score=608.65 Aligned_cols=344 Identities=21% Similarity=0.277 Sum_probs=305.9
Q ss_pred CcEEEEEeCCchhHHhHhhhCC------CCCCCcEEEEecCCCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCC---cE
Q psy16215 3 SRIIALIDMDCFYCQVECKLNP------SLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPE---IE 73 (1041)
Q Consensus 3 ~RvI~HIDmD~FYASVE~~~~P------eLrgkPVaV~q~n~~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPd---Lv 73 (1041)
.|+|+||||||||||||++.+| +|+++||||++. .+++.|+||||+||++||++||++++|+++||+ ++
T Consensus 51 ~r~i~hiD~d~FyaSvE~~~~p~~l~~~~l~~~Pv~V~~~--~~~~~V~a~syeAR~~GV~~gm~~~~A~~lcP~~~~lv 128 (434)
T 2aq4_A 51 TYIIFHIDFDCFFATVAYLCRSSSFSACDFKRDPIVVCHG--TKNSDIASCNYVARSYGIKNGMWVSQAEKMLPNGIKLI 128 (434)
T ss_dssp EEEEEEEEETTTTHHHHHHTCCGGGTTCCTTTSCEEECSC--SSSCBCSEECHHHHHTTCCTTCBHHHHHTTCCTTCCCE
T ss_pred ceEEEEEecCcHHHHHHHHHcCcccccccccCCcEEEEec--CCCCeEEEcCHHHHHcCCCCCCcHHHHHHhCCCCCCEE
Confidence 5899999999999999999999 999999999863 235779999999999999999999999999999 99
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHHHhc--CCcEEEeccceEEEE--cchhHHHHHhhccccccccccccccccCCCC
Q psy16215 74 LCRVPSVRGKADISKYRNAGREVIAVLSEF--SNIVERASIDEAYID--LTDVVHERMKSIGHIAASQLSNTFVVGFGPD 149 (1041)
Q Consensus 74 vV~VP~~~~k~Dld~Yr~aS~kI~eIL~~f--SP~VE~aSIDEafLD--LT~~v~~~L~~~~~~~~~~L~~~~~~g~~~~ 149 (1041)
+++ +|++.|+++|++|+++|.+| +|.||++||||+||| +|+....
T Consensus 129 v~~-------~~~~~Y~~~S~~i~~il~~~~~t~~ve~~SiDEaflD~~vt~~~~~------------------------ 177 (434)
T 2aq4_A 129 SLP-------YTFEQFQLKSEAFYSTLKRLNIFNLILPISIDEAVCVRIIPDNIHN------------------------ 177 (434)
T ss_dssp EEC-------CCHHHHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEEEEECC----------------------------
T ss_pred EEC-------CChHHHHHHHHHHHHHHHhcCCCCCEEEEcCceeEEcCcCccchhh------------------------
Confidence 987 89999999999999999997 689999999999999 9986530
Q ss_pred CCchhhhhhcchhhcccccCCCcccccccchhHHhhhHHHHHHHHHHHHHHhhh-CCceeEEEeCCHHHHHHhccCCCCC
Q psy16215 150 NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT-QFHCSAGIAHNKVLAKLVCGLHKPQ 228 (1041)
Q Consensus 150 ~~~e~~r~~g~~~W~~~LFg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~el-Glt~SVGIA~NKlLAKLAS~~aKPn 228 (1041)
.|++ +..+|++||++|++++ |||||||||+||+|||||++++||+
T Consensus 178 -----------------~~~~-----------------~~~la~~Ir~~I~~~~gGlt~svGIa~nk~lAKlAs~~aKp~ 223 (434)
T 2aq4_A 178 -----------------TNTL-----------------NARLCEEIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPN 223 (434)
T ss_dssp -------------------CH-----------------HHHHHHHHHHHHHHHHSSCCEEEEEESSHHHHHHHHHHHCSS
T ss_pred -----------------cCCC-----------------HHHHHHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHhcCCCC
Confidence 1111 3579999999999999 8999999999999999999999999
Q ss_pred ceEEeccchH-HHhhhcCCccccccCCHHHHHHHHHh--CCCccchhhhhC-CHHHHHHHhhhhhHHHHHHHHcCCCCcc
Q psy16215 229 KQSILPQSSV-SMLYANLSIKKVRHLGGKLGDEVVET--LQCSTMLELEKF-SLKQLQSHFEEKTASWLYYIARGIDHEP 304 (1041)
Q Consensus 229 Gqtvl~p~~v-~~fL~~LPI~kIpGIG~K~a~rLL~~--LGI~TIGDLa~L-p~~~L~krFG~k~G~~L~~~aRGiD~ep 304 (1041)
|++++.++++ .+||+++||++|||||++++++ |++ +||+|++||+++ |+..|+++||.+.|.++|+.|+|+|.++
T Consensus 224 G~~~l~~~~~~~~~l~~lpv~~l~GiG~~~~~~-L~~~~~GI~ti~dL~~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~ 302 (434)
T 2aq4_A 224 GYNITFKSNLSEEFWSSFKLDDLPGVGHSTLSR-LESTFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEE 302 (434)
T ss_dssp CEECCCGGGCCHHHHTTCCGGGSTTCCHHHHHH-HHHHTTCCCSHHHHHHHCCHHHHHHHHCSSHHHHHHHHTTTCCCHH
T ss_pred CEEEECChhhHHHHhhcCCcccccCcCHHHHHH-HHHhcCCceEHHHHHhcCCHHHHHHHhCHHHHHHHHHHhcCCCccc
Confidence 9999999887 7999999999999999999998 788 899999999999 9999999999668999999999999999
Q ss_pred cc-----cc--cCCcceeeEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhchhccCceeeEEEEEEEEcC--------
Q psy16215 305 VN-----AR--LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQET-------- 369 (1041)
Q Consensus 305 V~-----p~--~ppKSIssErTF~~r~dLtd~eeL~~~L~~LaeELaeRLRr~~~~ngr~artLTLkLR~sd-------- 369 (1041)
|. +. .++|||+++++|+. ++.+.+++..+|..|+++|+.||+++ ++.+++|+|++++..
T Consensus 303 v~~~~~~~~~~~~~ksi~~~~tf~~--~~~~~~~l~~~l~~l~~~l~~rLr~~----~~~~~~v~l~l~~r~~~~~~~~~ 376 (434)
T 2aq4_A 303 SLKILYDPKEVLQRKSLSIDINWGI--RFKNITQVDLFIERGCQYLLEKLNEI----NKTTSQITLKLMRRCKDAPIEPP 376 (434)
T ss_dssp HHHHHHCHHHHHSCCCEEEEECSSC--CCSSHHHHHHHHHHHHHHHHHHHHHT----TEEEEEEEEEEEEECTTSCSSCS
T ss_pred ccccccCcccCCCCceeEEEEECCC--CCCCHHHHHHHHHHHHHHHHHHHHHc----CCcceEEEEEEEEecCCCCcccc
Confidence 85 32 47899999999996 69999999999999999999999998 999999999998422
Q ss_pred ----CCCceeEEEEEeC--CCCcHHHHHHHHHHHHHHhccCCCCCCCCCCEEEEEEEEcCCCC
Q psy16215 370 ----DGKVNSCSRSIAL--ASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSP 426 (1041)
Q Consensus 370 ----~g~~~s~SRSl~L--pT~Dae~L~~~A~~LL~rL~~~~~~~a~~~pVRlIGVsLSdLvp 426 (1041)
.+.+...+++.++ |+++...|++.+..+|++++. ...+||+|||++++|.+
T Consensus 377 ky~g~gd~~~~s~s~~l~~pt~~~~~i~~~a~~ll~~~~~------~~~~vR~lgv~~s~l~~ 433 (434)
T 2aq4_A 377 KYMGMGRCDSFSRSSRLGIPTNEFGIIATEMKSLYRTLGC------PPMELRGLALQFNKLVD 433 (434)
T ss_dssp STTCCCSEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHTC------CGGGEEEEEEEEEEEEE
T ss_pred cccCCCCcccceEEeecCCCcCCHHHHHHHHHHHHHHhcC------CCCCEEEEEEEEeCccc
Confidence 1123456666555 689999999999999999873 14689999999999864
No 12
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=100.00 E-value=7.7e-56 Score=467.19 Aligned_cols=215 Identities=28% Similarity=0.473 Sum_probs=188.4
Q ss_pred CcEEEEEeCCchhHHhHhhhCCCCCCCcEEEEecCC--CCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCC
Q psy16215 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNT--WKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSV 80 (1041)
Q Consensus 3 ~RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n~--~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~ 80 (1041)
+.+|+||||||||||||++++|+|+++||||++... ..+++|+||||+||++||++||++++|+++||++++++
T Consensus 5 ~~~~~hiD~d~FyasvE~~~~p~L~~~Pv~V~~~~~~~~~~g~V~a~s~~Ar~~GV~~gm~~~~A~~lcP~l~v~~---- 80 (221)
T 1im4_A 5 HHIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVP---- 80 (221)
T ss_dssp SCCEEEEEETTHHHHHHHHHSGGGTTSCEEEEEEC----CCEEEEEECHHHHTTTCCTTCBHHHHHHHCTTSEEEE----
T ss_pred ceEEEEEecCcHHHHHHHHHCccccCCcEEEEecCCcCCCCCEEEECCHHHHHcCCCCCCcHHHHHHHCCCeEEEC----
Confidence 468999999999999999999999999999995311 24688999999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhhccccccccccccccccCCCCCCchhhhhhcc
Q psy16215 81 RGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGV 160 (1041)
Q Consensus 81 ~~k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~~~~~~~~~L~~~~~~g~~~~~~~e~~r~~g~ 160 (1041)
+|++.|+++|++|++++.+|+|.||++||||+|||+|++.+.
T Consensus 81 ---~~~~~Y~~~s~~i~~~l~~~tp~ve~~siDE~~lDvt~~~~~----------------------------------- 122 (221)
T 1im4_A 81 ---MRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEG----------------------------------- 122 (221)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTT-----------------------------------
T ss_pred ---CCHHHHHHHHHHHHHHHHHhCCceEEecCCeEEEEecchhhh-----------------------------------
Confidence 899999999999999999999999999999999999987420
Q ss_pred hhhcccccCCCcccccccchhHHhhhHHHHHHHHHHHHHHhhhCCceeEEEeCCHHHHHHhccCCCCCceEEeccchHHH
Q psy16215 161 MEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSM 240 (1041)
Q Consensus 161 ~~W~~~LFg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~elGlt~SVGIA~NKlLAKLAS~~aKPnGqtvl~p~~v~~ 240 (1041)
+|++ +..+|++||++|++++|++||+|||+||++||||++++||+|++++.++++.+
T Consensus 123 ------l~~~-----------------~~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlas~~~Kp~g~~~~~~~~~~~ 179 (221)
T 1im4_A 123 ------NFEN-----------------GIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQD 179 (221)
T ss_dssp ------CHHH-----------------HHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHTCSSCEEECCGGGHHH
T ss_pred ------ccCC-----------------HHHHHHHHHHHHHHHhCCeEEEEeCCCHHHHHHHHhhcCCCCEEEECHHHHHH
Confidence 2221 35789999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHH
Q psy16215 241 LYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS 283 (1041)
Q Consensus 241 fL~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~k 283 (1041)
||+++||++|||||+++.++ |+++||+|++||+++|+..|++
T Consensus 180 ~L~~lpv~~l~giG~~~~~~-L~~~Gi~TigdL~~~~~~~L~~ 221 (221)
T 1im4_A 180 FLNELDIDEIPGIGSVLARR-LNELGIQKLRDILSKNYNELEK 221 (221)
T ss_dssp HHHTCBGGGSTTCCHHHHHH-HHHTTCCBTTC-----------
T ss_pred HHHhCCcccccCCCHHHHHH-HHHcCCCcHHHHHCCCHHHhhC
Confidence 99999999999999999998 8999999999999999988864
No 13
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=99.39 E-value=3e-14 Score=111.71 Aligned_cols=36 Identities=39% Similarity=0.837 Sum_probs=32.2
Q ss_pred CCCCCcccccccCCCCCcccccccchhhHHhhhhcc
Q psy16215 946 IADPTKIICDKCSQPIDINELQEHQDYHFALELSTT 981 (1041)
Q Consensus 946 ~~~~d~~~C~rC~~~v~~~E~~EH~DyHfAkdLQ~s 981 (1041)
.++.+.+.|+|||+.|++|++|||+||||||+||+|
T Consensus 4 ~~~~~~~~C~~C~~~i~~~~~~EH~D~H~A~~Lq~s 39 (39)
T 2i5o_A 4 MAAEDQVPCEKCGSLVPVWDMPEHMDYHFALELQKS 39 (39)
T ss_dssp --CCCEEECTTTCCEEEGGGHHHHHHHHHHHHHTTC
T ss_pred CCcCCCcccccccCcCCcccccchhhHHHHHHHhcC
Confidence 456788999999999999999999999999999985
No 14
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=99.19 E-value=7.9e-11 Score=111.75 Aligned_cols=100 Identities=13% Similarity=0.206 Sum_probs=89.4
Q ss_pred cceeeEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhchhccCceeeEEE---EEEEEcCCCCceeEEEEEeCCCCcHH
Q psy16215 312 KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLT---VSFTQETDGKVNSCSRSIALASYKLQ 388 (1041)
Q Consensus 312 KSIssErTF~~r~dLtd~eeL~~~L~~LaeELaeRLRr~~~~ngr~artLT---LkLR~sd~g~~~s~SRSl~LpT~Dae 388 (1041)
.-+|.|.||+. ++.+.+++..+|..|+++|+.||++. + .+++|+ |++++.+| ..++++.+.|+++..
T Consensus 5 ~~~g~e~Tf~~--d~~~~~~l~~~l~~l~~~v~~rLr~~----~-~~~tV~k~~vkir~~dF---~~~trs~t~pt~~~~ 74 (115)
T 1unn_C 5 HHVGVERTMAE--DIHHWSECEAIIERLYPELERRLAKV----K-PDLLIARQGVKLKFDDF---QQTTQEHVWPRLNKA 74 (115)
T ss_dssp CEEEEEEEEEE--EECCHHHHHHHHHHHHHHHHHHHHHH----C-TTCBCSEEEEEEEETTS---CEEEEEEECSBCCHH
T ss_pred CCCccceECCC--CCCCHHHHHHHHHHHHHHHHHHHHhh----C-CCCeEEEeEEEEEECCC---CeEEeccccCcCCHH
Confidence 46899999996 69999999999999999999999998 8 999999 99999998 456677668899999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCEEEEEEEEcCCCCCC
Q psy16215 389 DIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPLG 428 (1041)
Q Consensus 389 ~L~~~A~~LL~rL~~~~~~~a~~~pVRlIGVsLSdLvp~~ 428 (1041)
.|+..|..+|++.+. ..+||+|||++++|.+..
T Consensus 75 ~i~~~a~~Ll~~~~~-------~~~vRllGV~ls~L~~~~ 107 (115)
T 1unn_C 75 DLIATARKTWDERRG-------GRGVRLVGLHVTLLDPQM 107 (115)
T ss_dssp HHHHHHHHHHHHHCT-------TCCEEEEEEEEECCCCCC
T ss_pred HHHHHHHHHHHhhhc-------CCCEEEEEEEEeCCCCCC
Confidence 999999999999873 568999999999997764
No 15
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=96.27 E-value=0.0054 Score=52.62 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=46.5
Q ss_pred ccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhh-HHHHHHHHcC
Q psy16215 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKT-ASWLYYIARG 299 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~-G~~L~~~aRG 299 (1041)
+.+|||||++..++||+.+| ++.+|...+.++|.+..|... |..+|..++.
T Consensus 6 L~~IpGIG~kr~~~LL~~Fg--s~~~i~~As~eeL~~vig~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSILGNAANAKQLYDFIHT 57 (63)
T ss_dssp HHTSTTCCHHHHHHHHHHCS--SHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHC
T ss_pred HHcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHHcCchHHHHHHHHHHhc
Confidence 56899999999999988776 999999999999999999888 9999999975
No 16
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=96.01 E-value=0.0016 Score=45.94 Aligned_cols=16 Identities=31% Similarity=0.804 Sum_probs=13.9
Q ss_pred ccccchhcccccCCcC
Q psy16215 1024 KKLKTIDQFFKPKSQS 1039 (1041)
Q Consensus 1024 ~~~~tl~sFFk~~~~~ 1039 (1041)
.|++||++||||++..
T Consensus 7 ~g~~TLesFFK~L~~~ 22 (26)
T 2zvk_U 7 EGMQTLESFFKPLTHX 22 (26)
T ss_pred cccccHHHHhccCCcc
Confidence 4899999999999854
No 17
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=95.29 E-value=0.018 Score=52.37 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=45.3
Q ss_pred ccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhh-HHHHHHHHcC
Q psy16215 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKT-ASWLYYIARG 299 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~-G~~L~~~aRG 299 (1041)
|.+|||||++..++||..+ .++.+|..++.++|.+..|... |..+|..++.
T Consensus 20 L~~IpGIG~kr~~~LL~~F--gSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLMHHV--KNIAELAALSQDELTSILGNAANAKQLYDFIHT 71 (84)
T ss_dssp HHTCSSCCHHHHHHHHHHS--SCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHTS
T ss_pred HHhCCCCCHHHHHHHHHHc--CCHHHHHHCCHHHHHHHhCchHHHHHHHHHHHh
Confidence 5679999999999988765 4899999999999999999888 9999999974
No 18
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=94.90 E-value=0.019 Score=50.45 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=46.5
Q ss_pred CccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhh--hhhHHHHHHHHcC
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE--EKTASWLYYIARG 299 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG--~k~G~~L~~~aRG 299 (1041)
+|.+|+|||+.++.+ |...||.|+.||+.++...|....| +..+..+...+|-
T Consensus 8 ~l~~L~Gi~~~~~~k-L~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFK-LAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHSSTTCCHHHHHH-HHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHH-HHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 466788999999998 8999999999999999999999887 6677888888774
No 19
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=91.78 E-value=0.099 Score=46.02 Aligned_cols=52 Identities=12% Similarity=0.244 Sum_probs=43.3
Q ss_pred CCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH--hhhhhHHHHHHHHc
Q psy16215 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH--FEEKTASWLYYIAR 298 (1041)
Q Consensus 245 LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr--FG~k~G~~L~~~aR 298 (1041)
..+..|||||++++++|++.+| ++.+|...+.+.|.+. +|++.+..++...+
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~fg--sl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYMG--GLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHHS--CHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHHhcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 4577899999999999998876 6889999999999887 78777777776553
No 20
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=91.77 E-value=0.16 Score=45.69 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=45.3
Q ss_pred CccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH--hhhhhHHHHHHHHcC
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH--FEEKTASWLYYIARG 299 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr--FG~k~G~~L~~~aRG 299 (1041)
.|..|||||++.+++|++.+| ++.+|...+.+.|.+. +|++.+..++..+..
T Consensus 20 ~L~~IpgIG~~~A~~Ll~~fg--sl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 20 CLTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHTTSSSCCHHHHHHHHHHTC--BHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 466899999999999998887 6899999999999988 888888888888865
No 21
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=91.64 E-value=0.15 Score=46.18 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=44.6
Q ss_pred CccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH--hhhhhHHHHHHHHcC
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH--FEEKTASWLYYIARG 299 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr--FG~k~G~~L~~~aRG 299 (1041)
.|..|||||++++++|++.+| ++.+|...+.+.|.+. +|++.+..++..+..
T Consensus 33 ~L~~IpgIG~~~A~~Ll~~fg--s~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~ 86 (91)
T 2a1j_B 33 CLTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVLHE 86 (91)
T ss_dssp HHTTSTTCCHHHHHHHHHHHS--SHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHS
T ss_pred HHHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhh
Confidence 456889999999999988877 6889999999999988 888888888887754
No 22
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=90.09 E-value=0.19 Score=46.56 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=32.1
Q ss_pred CccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH 284 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr 284 (1041)
.|++||+||+++++. |.++||.|+.||..+.+..+-.+
T Consensus 5 ~L~~LPNiG~~~e~~-L~~vGI~s~e~L~~~Ga~~ay~r 42 (93)
T 3bqs_A 5 NLSELPNIGKVLEQD-LIKAGIKTPVELKDVGSKEAFLR 42 (93)
T ss_dssp CGGGSTTCCHHHHHH-HHHTTCCSHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHH-HHHcCCCCHHHHHhCCHHHHHHH
Confidence 588999999999886 89999999999999876654433
No 23
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=89.96 E-value=0.23 Score=46.00 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=32.3
Q ss_pred CccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH 284 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr 284 (1041)
.|+++|+||+++++. |.++||.|+.||..+.+..+-.+
T Consensus 5 ~L~dLPNig~~~e~~-L~~~GI~t~~~Lr~~Ga~~ay~r 42 (93)
T 3mab_A 5 NLSELPNIGKVLEQD-LIKAGIKTPVELKDVGSKEAFLR 42 (93)
T ss_dssp CGGGSTTCCHHHHHH-HHHTTCCSHHHHHHHCHHHHHHH
T ss_pred HHhhCCCCCHHHHHH-HHHcCCCCHHHHHhCCHHHHHHH
Confidence 578999999998876 89999999999999987654333
No 24
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=89.63 E-value=0.22 Score=47.67 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=47.8
Q ss_pred cCCccccc--cCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhh--hhhHHHHHHHHcCC
Q psy16215 244 NLSIKKVR--HLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE--EKTASWLYYIARGI 300 (1041)
Q Consensus 244 ~LPI~kIp--GIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG--~k~G~~L~~~aRGi 300 (1041)
++||.+|+ |||+...++ |...|+.|+.+|+..++..|...-| +..+.++...++-.
T Consensus 22 ~~~I~~L~~~GIg~~~i~k-L~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 22 PQPISRLEQCGINANDVKK-LEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CCCHHHHHHTTCSHHHHHH-HHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred CccHHHHHhcCCCHHHHHH-HHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 45888888 999999998 7999999999999999999987655 66778888888753
No 25
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=89.13 E-value=0.45 Score=42.14 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=44.6
Q ss_pred hhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH--hhhhhHHHHHHHHc
Q psy16215 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH--FEEKTASWLYYIAR 298 (1041)
Q Consensus 242 L~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr--FG~k~G~~L~~~aR 298 (1041)
+...||.++ ++..+...- |++.||+|++||.+.+...|.+. ||.+....+...+.
T Consensus 6 ~l~~~Ie~L-~LS~Ra~Nc-LkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~ 62 (73)
T 1z3e_B 6 VLEMTIEEL-DLSVRSYNC-LKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLE 62 (73)
T ss_dssp HHTCBGGGS-CCBHHHHHH-HHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred hhcCcHHHh-CCCHHHHHH-HHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHH
Confidence 334899999 899888776 89999999999999999999765 88766666655554
No 26
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=87.58 E-value=0.11 Score=55.80 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH--hhhhhHHHHHHHHcC
Q psy16215 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH--FEEKTASWLYYIARG 299 (1041)
Q Consensus 245 LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr--FG~k~G~~L~~~aRG 299 (1041)
..|..|||||++++.+|+.. |+.++.+|...+...|.+. +|++.+++++..+..
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~-gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREA-GFESVEDVRGADQSALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp ---------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHc-CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHH
Confidence 46788999999999997766 9999999999999999988 888888887665543
No 27
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=87.24 E-value=0.37 Score=51.06 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=45.7
Q ss_pred cCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhh-hhHHHHHHHH
Q psy16215 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEE-KTASWLYYIA 297 (1041)
Q Consensus 244 ~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~-k~G~~L~~~a 297 (1041)
.-+|..|||||++.++.||+.+| ++..|.+.+.++|.+.+|+ +.+..++.+.
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~VIG~~~~A~~I~~~f 219 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARVIGSTEIARRVLDIL 219 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHHHTCHHHHHHHHHHC
T ss_pred cccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHHhChHHHHHHHHHHh
Confidence 44678999999999999999888 7899999999999999998 8888888753
No 28
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=85.88 E-value=0.87 Score=41.02 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=43.8
Q ss_pred hhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH--hhhhhHHHHHHHH
Q psy16215 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH--FEEKTASWLYYIA 297 (1041)
Q Consensus 242 L~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr--FG~k~G~~L~~~a 297 (1041)
+-.+||.++ ++..+...- |++.||+|++||.+++...|.+. ||.+....+...+
T Consensus 13 ~l~~~Ie~L-~LS~Ra~Nc-Lk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L 68 (79)
T 3gfk_B 13 VLEMTIEEL-DLSVRSYNC-LKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKL 68 (79)
T ss_dssp GGGCBGGGS-CCBHHHHHH-HHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHH
T ss_pred HhcCcHHHh-CCCHHHHHH-HHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHH
Confidence 456799999 899887776 89999999999999999998755 8876666665544
No 29
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=85.19 E-value=0.8 Score=39.17 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=42.8
Q ss_pred CccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH--hhhhhHHHHHHHHcC
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH--FEEKTASWLYYIARG 299 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr--FG~k~G~~L~~~aRG 299 (1041)
.+..|||||++++.+|++.+| ++.+|...+...|... +|+..+..++..+..
T Consensus 15 ~L~~i~giG~~~a~~Ll~~fg--s~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 15 IVEGLPHVSATLARRLLKHFG--SVERVFTASVAELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHHHC--SHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHcCCCCCCHHHHHHHHHHcC--CHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 357899999999999888764 5888999999999877 788888888777654
No 30
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=84.07 E-value=1.2 Score=40.64 Aligned_cols=53 Identities=6% Similarity=0.016 Sum_probs=44.0
Q ss_pred cCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHH--HhhhhhHHHHHHHHc
Q psy16215 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS--HFEEKTASWLYYIAR 298 (1041)
Q Consensus 244 ~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~k--rFG~k~G~~L~~~aR 298 (1041)
..||.++ ++..+...- |++.||+|++||.+.+...|-+ -||.+....+...+.
T Consensus 11 ~~~I~~L-~LSvRa~Nc-LkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~ 65 (86)
T 3k4g_A 11 LRPVDDL-ELTVRSANC-LXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLA 65 (86)
T ss_dssp GSBGGGG-CCCHHHHHH-HHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred hCcHHHh-CCCHHHHHH-HHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHH
Confidence 5689999 899888776 8999999999999999999864 488777777766664
No 31
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=82.91 E-value=0.63 Score=48.15 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=47.9
Q ss_pred CccccccCCHHHHHHHHHhCCCccch-hhhhCCHHHHHHH--hhhhhHHHHHHHHcCCC
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCSTML-ELEKFSLKQLQSH--FEEKTASWLYYIARGID 301 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~TIG-DLa~Lp~~~L~kr--FG~k~G~~L~~~aRGiD 301 (1041)
-+..|+|||++++.++|..+|-.++- .+..-+.+.|.+. .|++.+++++..+++.-
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~k~ 131 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGKV 131 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTTS
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 45679999999999999999987775 4777899999998 78999999999998753
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=82.25 E-value=0.73 Score=55.45 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=46.3
Q ss_pred CCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHc
Q psy16215 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298 (1041)
Q Consensus 245 LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aR 298 (1041)
+|+..|||||+..+++ |...|++|+.||+ .++..|.+.+|++.|..++..+.
T Consensus 657 ~~L~qlp~i~~~rar~-L~~~g~~s~~~l~-~~~~~l~~~l~~~~~~~i~~~~~ 708 (715)
T 2va8_A 657 LELVQISGVGRKRARL-LYNNGIKELGDVV-MNPDKVKNLLGQKLGEKVVQEAA 708 (715)
T ss_dssp HHHHTSTTCCHHHHHH-HHHTTCCSHHHHH-HCHHHHHHHHCHHHHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHH-HHHcCCCCHHHHh-CCHHHHHHHhChhHHHHHHHHHH
Confidence 6889999999999987 7899999999999 99999999998788888877543
No 33
>1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1
Probab=81.89 E-value=0.54 Score=44.19 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=24.1
Q ss_pred EEEEcCHHHHHcCCCCCCCHHHHHhh
Q psy16215 43 GIIAVNYEARHKGVTRHMRGDEAKQH 68 (1041)
Q Consensus 43 ~VIAvNYeARa~GVK~GMpl~eArkL 68 (1041)
.|.++|..|+++||+.||+..+|+.+
T Consensus 75 ~i~~vt~~A~elGI~~GM~g~eAL~k 100 (102)
T 1qw2_A 75 KVVEASQEAQKVGINPGDVLRNVIDK 100 (102)
T ss_dssp BCSEECHHHHHTTCCTTCBHHHHGGG
T ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHh
Confidence 57899999999999999999999875
No 34
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=81.83 E-value=1.6 Score=48.47 Aligned_cols=56 Identities=20% Similarity=0.114 Sum_probs=44.9
Q ss_pred hhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhh--hhhHHHHHHHHc
Q psy16215 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE--EKTASWLYYIAR 298 (1041)
Q Consensus 242 L~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG--~k~G~~L~~~aR 298 (1041)
....+|.+|||||+.+.++ |+..|+.|+.+++..++..|.+.-| ...+.++.+.++
T Consensus 32 ~~~~~l~~l~Gi~~~~~~k-L~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~ 89 (349)
T 1pzn_A 32 KIIRSIEDLPGVGPATAEK-LREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAAR 89 (349)
T ss_dssp ---CCSSCCTTCCHHHHHH-HHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cccccHHHcCCCCHHHHHH-HHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence 3445899999999999998 8999999999999999999998877 344566665554
No 35
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=79.87 E-value=1.5 Score=47.55 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=44.2
Q ss_pred CCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhh--hhhHHHHHHHHcC
Q psy16215 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE--EKTASWLYYIARG 299 (1041)
Q Consensus 245 LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG--~k~G~~L~~~aRG 299 (1041)
.+|.+|+||++.++++ |+..||.|+.||+..++..|.+.-| ...+..+...++-
T Consensus 3 ~~~~~l~gi~~~~~~k-L~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEK-LVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 (322)
T ss_dssp --CTTSTTCCHHHHHH-HHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred ccHhhcCCCCHHHHHH-HHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHH
Confidence 4788999999999998 8999999999999999999998776 4456666666653
No 36
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=79.17 E-value=0.83 Score=47.67 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=47.1
Q ss_pred CccccccCCHHHHHHHHHhCCCccch-hhhhCCHHHHHHH--hhhhhHHHHHHHHcCC
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCSTML-ELEKFSLKQLQSH--FEEKTASWLYYIARGI 300 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~TIG-DLa~Lp~~~L~kr--FG~k~G~~L~~~aRGi 300 (1041)
-+..|+|||++++.++|..+|-.++- .+..-+.+.|.+. .|++++++++..+++.
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk~k 131 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDR 131 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 45579999999999999999987765 5778899999999 7889999999888764
No 37
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=78.53 E-value=2.1 Score=47.17 Aligned_cols=58 Identities=5% Similarity=0.196 Sum_probs=49.3
Q ss_pred cCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhh--hhhHHHHHHHHcCCCC
Q psy16215 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE--EKTASWLYYIARGIDH 302 (1041)
Q Consensus 244 ~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG--~k~G~~L~~~aRGiD~ 302 (1041)
..|+..|||||+..+++ |...||.++.||..++...+...+| +..+..++..++....
T Consensus 156 ~~pL~Qlp~i~~~~~~~-l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~ 215 (328)
T 3im1_A 156 DNPLRQIPHFNNKILEK-CKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPN 215 (328)
T ss_dssp SCGGGGSTTCCHHHHHH-HHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_pred CCceeCCCCCCHHHHHH-HHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCC
Confidence 36899999999999887 7899999999999999999998765 4567888888887643
No 38
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=78.37 E-value=1 Score=41.36 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=26.9
Q ss_pred hhcCCccccccCCHHHHHHHHHhCCCccchhhh
Q psy16215 242 YANLSIKKVRHLGGKLGDEVVETLQCSTMLELE 274 (1041)
Q Consensus 242 L~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa 274 (1041)
|..-+|+++||||+.++++ |..-|+.+..+|.
T Consensus 15 mgeK~V~evpGIG~~~~~~-L~~~Gf~kAy~lL 46 (89)
T 1ci4_A 15 MGEKPVGSLAGIGEVLGKK-LEERGFDKAYVVL 46 (89)
T ss_dssp CTTCCGGGSTTCCHHHHHH-HHHTTCCSHHHHH
T ss_pred CCCCCcccCCCcCHHHHHH-HHHcCccHHHHHH
Confidence 4456999999999999999 7999999876654
No 39
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=77.89 E-value=1.6 Score=40.78 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=43.3
Q ss_pred CCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH--hhhhhHHHHHHHHc
Q psy16215 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH--FEEKTASWLYYIAR 298 (1041)
Q Consensus 245 LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr--FG~k~G~~L~~~aR 298 (1041)
+||.++ ++..+...- |++.||+|++||.+++...|-+. ||.+....+...+.
T Consensus 24 ~~Ie~L-~LSvRs~Nc-LkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~ 77 (98)
T 1coo_A 24 RPVDDL-ELTVRSANC-LKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 77 (98)
T ss_dssp SBGGGG-TCCTTTHHH-HHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred CcHHHh-CCCHHHHHH-HHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHH
Confidence 899999 788887776 89999999999999999999655 89776666666653
No 40
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=76.86 E-value=1.2 Score=38.68 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=25.7
Q ss_pred ccccccCCHHHHHHHHHhCCCccchhhhhC
Q psy16215 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKF 276 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~LGI~TIGDLa~L 276 (1041)
+..|||||+++++++++..+..++.||.++
T Consensus 29 L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v 58 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEGRPYARVEDLLKV 58 (75)
T ss_dssp HTTSTTCCHHHHHHHHHTCCCSSGGGGGGS
T ss_pred HHhCCCCCHHHHHHHHHHcccCCHHHHHhC
Confidence 456899999999999988888888888765
No 41
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=76.48 E-value=1.3 Score=53.34 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=48.0
Q ss_pred CCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHc
Q psy16215 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298 (1041)
Q Consensus 245 LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aR 298 (1041)
+|+..|||||+..+++ |...|++|+.||+.++ ..|.+.+|++.|..++..++
T Consensus 632 ~~L~qlp~v~~~~ar~-l~~~g~~s~~~l~~~~-~~l~~ll~~~~~~~i~~~~~ 683 (702)
T 2p6r_A 632 LELVRIRHIGRVRARK-LYNAGIRNAEDIVRHR-EKVASLIGRGIAERVVEGIS 683 (702)
T ss_dssp HHHHTSTTCCHHHHHH-HHTTTCCSHHHHHHTH-HHHHHHHCHHHHHHHHHHHH
T ss_pred HhhhcCCCCCHHHHHH-HHHcCCCCHHHHHhhh-HHHHHHhChhHHHHHHHhcC
Confidence 5888999999999987 7999999999999999 99999999888999999888
No 42
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=74.51 E-value=3.5 Score=45.69 Aligned_cols=56 Identities=4% Similarity=0.070 Sum_probs=47.9
Q ss_pred CCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhh--hhhHHHHHHHHcCCC
Q psy16215 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE--EKTASWLYYIARGID 301 (1041)
Q Consensus 245 LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG--~k~G~~L~~~aRGiD 301 (1041)
.|+..|||||+..+++ |...||.++.||..+++..+...+| +..+..++..++-..
T Consensus 161 ~pL~Qlp~i~~~~~~~-l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P 218 (339)
T 2q0z_X 161 SYLKQLPHFTSEHIKR-CTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 218 (339)
T ss_dssp CGGGGSTTCCHHHHHH-HHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSC
T ss_pred CceecCCCCCHHHHHH-HHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 6999999999999887 7899999999999999999988887 445677888887653
No 43
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=76.42 E-value=0.64 Score=30.62 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=19.3
Q ss_pred cccccccCCCCCccc-ccccchhh
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
+|.|+.||+.|.... |..|+-.|
T Consensus 2 p~~C~~C~k~f~~~~~l~~H~~~H 25 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQLANHIRHH 25 (26)
Confidence 478999999999855 99998766
No 44
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=72.58 E-value=2.5 Score=43.88 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=43.6
Q ss_pred ccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH--hhhhhHHHHHHHHcC
Q psy16215 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH--FEEKTASWLYYIARG 299 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr--FG~k~G~~L~~~aRG 299 (1041)
+..|||||++.+.+|++.+| ++.+|...+.+.|... +|++.+..++..++.
T Consensus 164 L~~i~gVg~~~a~~Ll~~fg--s~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~~ 216 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILERFG--SLERFFTASKAEISKVEGIGEKRAEEIKKILMT 216 (219)
T ss_dssp HHTSTTCCHHHHHHHHHHHS--SHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHcC--CHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHhc
Confidence 56899999999999988876 4888999999999888 788888988887753
No 45
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=72.56 E-value=3.9 Score=37.04 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=38.5
Q ss_pred hcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhh
Q psy16215 243 ANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE 286 (1041)
Q Consensus 243 ~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG 286 (1041)
..+.++..||+...+.+. |++-||+|+.|+...++.+|.+..|
T Consensus 2 ~~l~~~~~p~Lse~~~~~-L~~~~I~Tv~Dfl~~d~~eL~~~~~ 44 (83)
T 2kz3_A 2 GVLRVGLCPGLTEEMIQL-LRSHRIKTVVDLVSADLEEVAQKCG 44 (83)
T ss_dssp CCCCTTSSTTCCHHHHHH-HHHTTCCCHHHHTTSCHHHHHHHHT
T ss_pred CccccccCCCCCHHHHHH-HHHCCCCCHHHHHhCCHHHHHHHhC
Confidence 445677779999999986 8999999999999999999999988
No 46
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=73.81 E-value=0.84 Score=30.68 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.5
Q ss_pred cccccccCCCCCccc-ccccchhhH
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+|.|+.||+.|.... |..|+..|-
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLIAHVRQHT 26 (29)
Confidence 478999999999855 999998874
No 47
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=71.06 E-value=0.96 Score=29.73 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=18.7
Q ss_pred ccccccCCCCCccc-ccccchhh
Q psy16215 952 IICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 952 ~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
|.|+.||+.|.... |..|+.-|
T Consensus 2 ~~C~~C~k~f~~~~~l~~H~~~h 24 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRHQRVH 24 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred ccCCCCCCcCCCHHHHHHHHHHc
Confidence 78999999999854 99998766
No 48
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=70.15 E-value=3.5 Score=49.68 Aligned_cols=56 Identities=7% Similarity=0.085 Sum_probs=45.0
Q ss_pred cCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH--hhhhhHHHHHHHHcCC
Q psy16215 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH--FEEKTASWLYYIARGI 300 (1041)
Q Consensus 244 ~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr--FG~k~G~~L~~~aRGi 300 (1041)
.+|+..|||||+..+++ |...|++|+.||+.+++..|.+. +|++....+...++..
T Consensus 645 ~~~L~qlp~v~~~rar~-L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~~~ 702 (720)
T 2zj8_A 645 LIPLMQLPLVGRRRARA-LYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLGKN 702 (720)
T ss_dssp GGGGTTSTTCCHHHHHH-HHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC--
T ss_pred chhhhhCCCCCHHHHHH-HHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcccc
Confidence 36999999999999987 78999999999999999999977 6655555555555543
No 49
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=69.93 E-value=0.98 Score=30.05 Aligned_cols=23 Identities=26% Similarity=0.697 Sum_probs=19.8
Q ss_pred cccccccCCCCCccc-ccccchhh
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
++.|+.|++.|.... |..|+..|
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 2 SFVCEVCTRAFARQEHLKRHYRSH 25 (29)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred CeECCCCCcccCCHHHHHHHHHHh
Confidence 478999999999955 99998877
No 50
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=72.54 E-value=0.95 Score=30.37 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.6
Q ss_pred cccccccCCCCCccc-ccccchhhH
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+|.|+.||+.|.... |..|+..|-
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~h~ 27 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGALQRHVRIHT 27 (30)
Confidence 478999999999855 999998875
No 51
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.41 E-value=1.6 Score=30.85 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=21.5
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+.-|-
T Consensus 7 ~~~~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2elr_A 7 GKTHLCDMCGKKFKSKGTLKSHKLLHT 33 (36)
T ss_dssp CSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred CCCeecCcCCCCcCchHHHHHHHHHhc
Confidence 45689999999999855 999988773
No 52
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=67.87 E-value=1.1 Score=47.67 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=0.0
Q ss_pred cCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH-hhhhhHHHHHHHHc
Q psy16215 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH-FEEKTASWLYYIAR 298 (1041)
Q Consensus 244 ~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr-FG~k~G~~L~~~aR 298 (1041)
..+|..|||||++.+++||+.+| ++..|.+.+.++|.+. +|++.+..++.+++
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~FG--Sl~~i~~As~eeL~~VGIG~~~A~~I~~~f~ 225 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNYFG--SVKKMKEATVEELQRANIPRAVAEKIYEKLH 225 (226)
T ss_dssp --------------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHHhC--CHHHHHhCCHHHHHHcCCCHHHHHHHHHHhh
Confidence 45678999999999999887764 5777888889999998 66777777776553
No 53
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=67.19 E-value=1.6 Score=28.77 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=20.2
Q ss_pred cccccccCCCCCccc-ccccchhhH
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+|.|+.|++.|.... |..|+-.|-
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~ 26 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLKAHLKIHI 26 (29)
T ss_dssp CCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred CCcCCCCCcccCCHHHHHHHHHHhc
Confidence 478999999999855 999988774
No 54
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.93 E-value=1.3 Score=31.47 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=21.6
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2els_A 7 GKIFTCEYCNKVFKFKHSLQAHLRIHT 33 (36)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred CCCEECCCCCceeCCHHHHHHHHHHhC
Confidence 45689999999999855 999988773
No 55
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=65.33 E-value=3.9 Score=42.97 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=45.9
Q ss_pred ccccCCHHHHHHHHHhCCCccch-hhhhCCHHHHHHH--hhhhhHHHHHHHHcCCC
Q psy16215 249 KVRHLGGKLGDEVVETLQCSTML-ELEKFSLKQLQSH--FEEKTASWLYYIARGID 301 (1041)
Q Consensus 249 kIpGIG~K~a~rLL~~LGI~TIG-DLa~Lp~~~L~kr--FG~k~G~~L~~~aRGiD 301 (1041)
.|+|||++++.++|..+|..++. .+..-++..|.+. .|+++++++...+++.-
T Consensus 92 sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~kl 147 (212)
T 2ztd_A 92 SVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV 147 (212)
T ss_dssp TSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTTC
T ss_pred CcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 39999999999999999998886 4667788999887 56899999999999864
No 56
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=65.25 E-value=1.2 Score=29.71 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.1
Q ss_pred cccccccCCCCCccc-ccccchhhH
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+|.|+.||..|.... |..|+-.|-
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 1rik_A 2 KFACPECPKRFMRSDHLTLHILLHE 26 (29)
T ss_dssp CEECSSSSCEESCSHHHHHHHTGGG
T ss_pred CccCCCCCchhCCHHHHHHHHHHhc
Confidence 478999999999865 999988774
No 57
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=64.87 E-value=2.9 Score=46.58 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=24.8
Q ss_pred ccccccCCHHHHHHHHHhCCCccchhhhhC
Q psy16215 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKF 276 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~LGI~TIGDLa~L 276 (1041)
+..|||||+++++++.+ .||+|+.||...
T Consensus 100 l~~V~GiGpk~a~~l~~-~Gi~tledL~~a 128 (335)
T 2fmp_A 100 LTRVSGIGPSAARKFVD-EGIKTLEDLRKN 128 (335)
T ss_dssp HTTSTTCCHHHHHHHHH-TTCCSHHHHHTC
T ss_pred HhCCCCCCHHHHHHHHH-cCCCCHHHHHHh
Confidence 45899999999999554 499999999975
No 58
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=64.23 E-value=1.8 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=19.9
Q ss_pred cccccccCCCCCccc-ccccchhhH
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+|.|+.||..|.... |..|+..|-
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~h~ 26 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLKTHIKTKH 26 (30)
T ss_dssp CCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred CccCCCCCCccCCHHHHHHHHHHHc
Confidence 478999999999855 999987774
No 59
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=63.93 E-value=6.5 Score=44.76 Aligned_cols=57 Identities=18% Similarity=-0.004 Sum_probs=45.6
Q ss_pred hhhcCCcccccc--CCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhh--hhhHHHHHHHHc
Q psy16215 241 LYANLSIKKVRH--LGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE--EKTASWLYYIAR 298 (1041)
Q Consensus 241 fL~~LPI~kIpG--IG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG--~k~G~~L~~~aR 298 (1041)
.-..+||.++.+ |++...++ |...|+.|+.+|+..++..|.+..| ...+..+...++
T Consensus 77 ~~~~~~~~~l~~~gi~~~~~~~-L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~ 137 (400)
T 3lda_A 77 LGSFVPIEKLQVNGITMADVKK-LRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAA 137 (400)
T ss_dssp -CCSCBGGGGCCTTCCHHHHHH-HHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred ccCccCHHHHHhCCCCHHHHHH-HHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 345578999986 88999988 8999999999999999999999988 334556665554
No 60
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=63.64 E-value=2.4 Score=50.55 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=33.6
Q ss_pred ccccccCCHHHHHHHHHhCCCccchhhhhC-CHHHHH--HHhhhhhHHHH
Q psy16215 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKF-SLKQLQ--SHFEEKTASWL 293 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~LGI~TIGDLa~L-p~~~L~--krFG~k~G~~L 293 (1041)
+.+|||||++++.+++.. ||.|+.||.+. ....|. .-||+++++++
T Consensus 99 L~~v~GVGpk~A~~i~~~-G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 99 LLGVRGLGPKKIRSLWLA-GIDSLERLREAAESGELAGLKGFGAKSAATI 147 (578)
T ss_dssp HTTSTTCCHHHHHHHHHT-TCCSHHHHHHHHHHTTTTTSTTCCHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHHc-CCCCHHHHHHHHhhCccccCCCCCHHHHHHH
Confidence 468999999999998776 99999999864 222333 24666666555
No 61
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=62.95 E-value=1.1 Score=29.83 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=19.4
Q ss_pred cccccccCCCCCccc-ccccchhh
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
+|.|+.||..|.... |..|+-.|
T Consensus 3 ~~~C~~C~~~f~~~~~l~~H~~~h 26 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSKMRHLETH 26 (30)
T ss_dssp CEECTTTCCEESCHHHHHHHHHTT
T ss_pred CccCCCCCcccCCHHHHHHHHHHh
Confidence 578999999999855 88888766
No 62
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=62.47 E-value=1.1 Score=29.67 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=18.6
Q ss_pred cccccccCCCCCccc-ccccchhh
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
++.|+.||+.|.... |..|+--|
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~H 26 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTKHLRTH 26 (27)
T ss_dssp CEECSSSSCEESSHHHHHHHHHHC
T ss_pred CccCCCcChhhCCHHHHHHHHHHc
Confidence 588999999999854 88887654
No 63
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=62.24 E-value=7.2 Score=47.45 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=44.4
Q ss_pred cCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHH--HhhhhhHHHHHHH
Q psy16215 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS--HFEEKTASWLYYI 296 (1041)
Q Consensus 244 ~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~k--rFG~k~G~~L~~~ 296 (1041)
.-..=+|+|+|+++.++|.+..+|.++.||..+....|.. .||++.+..|+..
T Consensus 445 sr~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~a 499 (671)
T 2owo_A 445 SRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNA 499 (671)
T ss_dssp STTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred hhhhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHH
Confidence 3466799999999999987888899999999998888876 5888888877654
No 64
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=61.88 E-value=1.2 Score=29.50 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=20.2
Q ss_pred cccccccCCCCCccc-ccccchhhH
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
++.|+.|++.|.... |..|+-.|-
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNLKRHLRIHS 26 (29)
T ss_dssp CEECTTTSCEESCHHHHHHHHHHHH
T ss_pred CccCCCCCCccCChhHHHHHHHHhc
Confidence 478999999998855 999988874
No 65
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=61.45 E-value=1.7 Score=47.49 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhh
Q psy16215 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE 286 (1041)
Q Consensus 245 LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG 286 (1041)
.||.++|||++...++ |+..|+.|+.+++..++..|.+..|
T Consensus 12 ~~~~~l~g~~~~~~~~-l~~~g~~t~~~~~~~~~~~l~~~~g 52 (324)
T 2z43_A 12 KTINDLPGISQTVINK-LIEAGYSSLETLAVASPQDLSVAAG 52 (324)
T ss_dssp ------------------------------------------
T ss_pred ccHHHcCCCCHHHHHH-HHHcCCCcHHHHHcCCHHHHHHhhC
Confidence 4899999999999998 8999999999999999999988777
No 66
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=61.14 E-value=1.9 Score=30.48 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=20.2
Q ss_pred cccccccCCCCCccc-ccccchhhH
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+|.|+.||+.|.... |..|+-.|-
T Consensus 2 p~~C~~C~k~F~~~~~L~~H~~~H~ 26 (33)
T 1rim_A 2 KFACPECPKRFMRSDHLSKHITLHE 26 (33)
T ss_dssp CCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred cccCCCCCchhCCHHHHHHHHHHhC
Confidence 478999999999855 999988774
No 67
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=60.98 E-value=1.2 Score=29.56 Aligned_cols=23 Identities=17% Similarity=0.559 Sum_probs=18.9
Q ss_pred cccccccCCCCCccc-ccccchhh
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
+|.|+.|++.|.... |..|+--|
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~h 26 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQMETHYRVH 26 (28)
T ss_dssp SEECSSSCCEESCHHHHHHHHTTS
T ss_pred CccCCCCCcccCCHHHHHHHHHhc
Confidence 588999999999844 88887665
No 68
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=60.73 E-value=1.3 Score=30.98 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=20.2
Q ss_pred cccccccCCCCCccc-ccccchhhH
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+|.|+.||+.|.... |..|+-.|-
T Consensus 2 p~~C~~C~k~f~~~~~L~~H~~~H~ 26 (32)
T 2kfq_A 2 AFACPACPKRFMRSDALSKHIKTAF 26 (32)
T ss_dssp CSSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHc
Confidence 478999999999855 999988774
No 69
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=60.45 E-value=5.7 Score=48.31 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=42.1
Q ss_pred CccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHH--HhhhhhHHHHHHH
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQS--HFEEKTASWLYYI 296 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~k--rFG~k~G~~L~~~ 296 (1041)
..=+|+|+|+++.++|.+..+|.++.||..+....|.. .||++.+..|+..
T Consensus 442 ~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~a 494 (667)
T 1dgs_A 442 KAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQ 494 (667)
T ss_dssp TSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHH
T ss_pred cccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHH
Confidence 55589999999999988888899999999998777765 4887777766544
No 70
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=60.35 E-value=2.8 Score=29.77 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=21.2
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|.
T Consensus 9 ~k~~~C~~C~k~f~~~~~l~~H~~~H~ 35 (37)
T 1p7a_A 9 IKPFQCPDCDRSFSRSDHLALHRKRHM 35 (37)
T ss_dssp SSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred CCCccCCCCCcccCcHHHHHHHHHHhc
Confidence 34689999999999855 888887773
No 71
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=58.87 E-value=2.2 Score=29.97 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=20.8
Q ss_pred CCcccccccCCCCCccc-ccccchhh
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
+.+|.|+.|++.|.... |..|+..|
T Consensus 5 ~k~~~C~~C~k~f~~~~~l~~H~~~H 30 (35)
T 1srk_A 5 KRPFVCRICLSAFTTKANCARHLKVH 30 (35)
T ss_dssp CSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred CcCeeCCCCCcccCCHHHHHHHHHHc
Confidence 34689999999999855 99998777
No 72
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=58.05 E-value=2 Score=30.00 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=21.1
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~ 31 (35)
T 2elx_A 5 SSGYVCALCLKKFVSSIRLRSHIREVH 31 (35)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred CCCeECCCCcchhCCHHHHHHHHHHHc
Confidence 34689999999999855 999987773
No 73
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=57.82 E-value=2.4 Score=29.66 Aligned_cols=14 Identities=43% Similarity=0.724 Sum_probs=12.1
Q ss_pred ccccchhcccccCC
Q psy16215 1024 KKLKTIDQFFKPKS 1037 (1041)
Q Consensus 1024 ~~~~tl~sFFk~~~ 1037 (1041)
.||++|++||.++.
T Consensus 3 sgMKSI~sFF~~k~ 16 (23)
T 3p87_G 3 SGMKSIDTFFGVKN 16 (26)
T ss_pred ccchhHHHHhcccc
Confidence 48999999999864
No 74
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=57.53 E-value=1.1 Score=29.92 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=18.9
Q ss_pred cccccccCCCCCccc-ccccchhh
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
+|.|+.||+.|.... |..|+-.|
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~H 26 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLASMQAHMRGH 26 (27)
T ss_dssp TEEETTTTEEESCHHHHHHHHTTC
T ss_pred CcCCCCCCcccCCHHHHHHHHHhc
Confidence 588999999999855 88887665
No 75
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=57.07 E-value=5.1 Score=49.51 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=28.2
Q ss_pred CCccccccCCHHHHHHHHHhCCCccchhhhhC
Q psy16215 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKF 276 (1041)
Q Consensus 245 LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~L 276 (1041)
.||+.++|||++.++. |+++||.|++||...
T Consensus 115 ~~~~~l~gvg~~~~~~-l~~lgi~~~~dll~~ 145 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKK-LKKLGIETLRDLLEF 145 (780)
T ss_dssp CCSSSSSSCCHHHHHH-HHTTTCCSSGGGTSC
T ss_pred CCchhcCCCCHHHHHH-HHHCCCCcHHHHHhh
Confidence 4999999999999987 899999999999864
No 76
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.71 E-value=3.9 Score=30.74 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2enh_A 10 EKPYECDVCRKAFSHHASLTQHQRVHS 36 (46)
T ss_dssp SSSCBCTTTCCBCSSSHHHHHHGGGSC
T ss_pred CCCcCCCCcCchhCCHHHHHHHHHHhC
Confidence 45689999999999966 999988774
No 77
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.42 E-value=2.1 Score=30.32 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=21.1
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+.-|-
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2elq_A 7 GKPFKCSLCEYATRSKSNLKAHMNRHS 33 (36)
T ss_dssp CCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred CCCccCCCCCchhCCHHHHHHHHHHhc
Confidence 45689999999999855 999987763
No 78
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.39 E-value=2.6 Score=29.70 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=21.2
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+--|-
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2elt_A 7 GKPYKCPQCSYASAIKANLNVHLRKHT 33 (36)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence 44689999999999855 999987773
No 79
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=55.32 E-value=4.5 Score=30.38 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=22.2
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.++.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ely_A 10 EKPFKCVECGKGFSRRSALNVHHKLHT 36 (46)
T ss_dssp CCSBCCSSSCCCBSSTTHHHHHHHHHS
T ss_pred CCCcccCccCcccCCHHHHHHHHHHcC
Confidence 45689999999999966 999998884
No 80
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.03 E-value=4.7 Score=29.39 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 9 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 35 (42)
T 2ytb_A 9 EKPYRCDQCGKAFSQKGSLIVHIRVHT 35 (42)
T ss_dssp CCSBCCTTTTCCBSSHHHHHTTGGGTS
T ss_pred CCCeeCCCccchhCCHHHHHHHHHHhC
Confidence 34689999999999955 999988774
No 81
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.86 E-value=4.3 Score=30.50 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=21.9
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2yth_A 10 EKPFQCEECGKRFTQNSHLHSHQRVHT 36 (46)
T ss_dssp SSSBCCSSSCCCBSSHHHHHHHGGGGT
T ss_pred CcCCCCCCCCcccCCHHHHHHHHHhcC
Confidence 45689999999999955 999998884
No 82
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=54.39 E-value=5.1 Score=47.64 Aligned_cols=54 Identities=19% Similarity=0.097 Sum_probs=38.1
Q ss_pred ccccccCCHHHHHHHHHhCCCccchhhhhCC-HHHHHH--HhhhhhHHHHHHHHcCC
Q psy16215 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKFS-LKQLQS--HFEEKTASWLYYIARGI 300 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp-~~~L~k--rFG~k~G~~L~~~aRGi 300 (1041)
+..|||||++++.+++..+|+.|+.||.+.- ...|.+ -||.++++++...+...
T Consensus 95 l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~~~ 151 (575)
T 3b0x_A 95 VMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALA 151 (575)
T ss_dssp HHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHHHH
Confidence 4579999999999988889999999997641 122332 25667777765555443
No 83
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.87 E-value=3.3 Score=29.49 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=21.4
Q ss_pred CCcccccccCCCCCcc-c-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDIN-E-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~-E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|... . |..|+..|-
T Consensus 7 ~k~~~C~~C~k~f~~~~~~L~~H~~~H~ 34 (37)
T 2elp_A 7 GRAMKCPYCDFYFMKNGSDLQRHIWAHE 34 (37)
T ss_dssp CCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred CCCeECCCCChhhccCHHHHHHHHHhcC
Confidence 4468999999999986 5 999987774
No 84
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.73 E-value=4.8 Score=30.35 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2eom_A 10 ERGHRCSDCGKFFLQASNFIQHRRIHT 36 (46)
T ss_dssp CSSCCCSSSCCCCSSHHHHHHHHHHHS
T ss_pred CCCcCCCCCCCeeCChHHHHHHHHHhC
Confidence 45689999999999955 999998884
No 85
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.73 E-value=2.7 Score=29.75 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=20.6
Q ss_pred CCcccccccCCCCCccc-ccccchhh
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
+.+|.|+.|++.|.... |..|+--|
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2elv_A 7 GLLYDCHICERKFKNELDRDRHMLVH 32 (36)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred CCCeECCCCCCccCCHHHHHHHHHHh
Confidence 45689999999999855 88888766
No 86
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.68 E-value=4.7 Score=33.11 Aligned_cols=24 Identities=29% Similarity=0.693 Sum_probs=20.4
Q ss_pred CcccccccCCCCCccc-ccccchhh
Q psy16215 950 TKIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 950 d~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
..+.|++|+..+..-+ |.-||-|-
T Consensus 11 ~~~~CPrCn~~f~~~~sLr~Hmkyc 35 (49)
T 2e72_A 11 GRKICPRCNAQFRVTEALRGHMCYC 35 (49)
T ss_dssp SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred CceeCCcccccccchHHHHhhhhhc
Confidence 5688999999999855 99999874
No 87
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.50 E-value=4 Score=30.39 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=21.9
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (44)
T 2eou_A 10 KTTSECQECGKIFRHSSLLIEHQALHA 36 (44)
T ss_dssp SCCCCCTTTCCCCSSHHHHHHHHHHHT
T ss_pred CcCeECCCCCcccCCHHHHHHHHHHHC
Confidence 45689999999999955 999998884
No 88
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.42 E-value=2.6 Score=29.97 Aligned_cols=26 Identities=12% Similarity=0.363 Sum_probs=21.4
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+.-|-
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~h~ 33 (37)
T 2elo_A 7 GRSYSCPVCEKSFSEDRLIKSHIKTNH 33 (37)
T ss_dssp CCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred CCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence 44689999999999955 999987773
No 89
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.27 E-value=4 Score=30.77 Aligned_cols=26 Identities=19% Similarity=0.507 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eon_A 10 EKPYKCQVCGKAFRVSSHLVQHHSVHS 36 (46)
T ss_dssp CCSCBCSSSCCBCSSHHHHHHHTTTTT
T ss_pred CcccCCCCCCcccCcHHHHHHHHHhcC
Confidence 45689999999999955 999988874
No 90
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=53.24 E-value=4.3 Score=36.23 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=26.9
Q ss_pred CCCCCCccCCCCCCcccccccCCCCCccc-ccccchhhH
Q psy16215 937 SSTVDSAINIADPTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 937 ~~~~~~~~~~~~~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+....+....+....+.|+.||+.|.... |..|+--|-
T Consensus 14 ~~~~~~~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~ 52 (85)
T 2lv2_A 14 GEGAGVLGLSASAECHLCPVCGESFASKGAQERHLRLLH 52 (85)
T ss_dssp CCCCSCCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCcCcHHHHhhhhhhcc
Confidence 33333333444556789999999999955 999988884
No 91
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.40 E-value=4 Score=30.62 Aligned_cols=26 Identities=23% Similarity=0.522 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2yti_A 10 EKPYKCNECGKVFTQNSHLARHRGIHT 36 (46)
T ss_dssp CCTTCCSSSCCCCSSHHHHHHHHTTTS
T ss_pred CcCeECCCCCcccCChhHHHHHhHhcC
Confidence 45689999999999965 999988774
No 92
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.20 E-value=5.4 Score=29.97 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=23.3
Q ss_pred CCCcccccccCCCCCccc-ccccchhhHH
Q psy16215 948 DPTKIICDKCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 948 ~~d~~~C~rC~~~v~~~E-~~EH~DyHfA 975 (1041)
.+.+|.|+.|++.|.... |..|+-.|-.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 37 (46)
T 2ytt_A 9 GEKPYQCSECGKSFSGSYRLTQHWITHTR 37 (46)
T ss_dssp CCCTTCCSSSCCCCSSHHHHHHHHTHHHH
T ss_pred CCCCeeCCCCCcccCCHHHHHHHHHHcCC
Confidence 345689999999999965 9999988864
No 93
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.02 E-value=4 Score=30.61 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2enf_A 10 EKPYKCNECGKVFTQNSHLVRHRGIHT 36 (46)
T ss_dssp CCSCBCSSSCCBCSSHHHHHHHHTTTT
T ss_pred CcCeECCCCCcccCCHHHHHHHHHhhC
Confidence 45689999999999965 999988774
No 94
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=51.90 E-value=2.2 Score=43.74 Aligned_cols=22 Identities=32% Similarity=0.751 Sum_probs=19.2
Q ss_pred ccccccCCCCCcccccccchhh
Q psy16215 952 IICDKCSQPIDINELQEHQDYH 973 (1041)
Q Consensus 952 ~~C~rC~~~v~~~E~~EH~DyH 973 (1041)
|.|++||++|...-+.+|+.=|
T Consensus 155 YKCe~CgKYvDId~~~~Hlk~H 176 (226)
T 2czr_A 155 YKCEECGKYVDIENLEAHLREH 176 (226)
T ss_dssp EECTTTCCEEEGGGHHHHHHTT
T ss_pred EehhhcCceecHHHHHHHHHHc
Confidence 6799999999998888888777
No 95
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=51.76 E-value=5.9 Score=44.96 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=24.3
Q ss_pred CccccccCCHHHHHHHHHhCCCccchhhhh
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCSTMLELEK 275 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~TIGDLa~ 275 (1041)
.+..|||||+++++++.+ .||+|+.||.+
T Consensus 122 ~l~~I~GvGpk~a~~ly~-~Gi~tledL~~ 150 (381)
T 1jms_A 122 LFTSVFGVGLKTAEKWFR-MGFRTLSKIQS 150 (381)
T ss_dssp HHHTSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred HHHccCCCCHHHHHHHHH-cCCCcHHHHHh
Confidence 345899999999999654 49999999985
No 96
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.74 E-value=5.2 Score=29.95 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq2_A 10 GKPYQCNECGKAFSQTSKLARHQRVHT 36 (46)
T ss_dssp SCSSSCCSSCCCCSSHHHHHHHGGGGC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcC
Confidence 45689999999999966 999998884
No 97
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.61 E-value=5.2 Score=30.07 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=22.2
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2elz_A 10 EKPYKCEDCGKGYNRRLNLDMHQRVHM 36 (46)
T ss_dssp CSSCBCSSSCCBCSSHHHHHHHGGGGG
T ss_pred CCCeeCcccCchhCCHHHHHHHHHhcC
Confidence 45689999999999965 999998884
No 98
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.39 E-value=4 Score=30.61 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2emg_A 10 ENPFICSECGKVFTHKTNLIIHQKIHT 36 (46)
T ss_dssp CCSCBCTTTCCBCSSHHHHHHHHTTTS
T ss_pred CCCEECCccCcccCCHHHHHHHHHHhC
Confidence 34689999999999966 999988774
No 99
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.34 E-value=4.2 Score=29.98 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=21.1
Q ss_pred CCcccccccCCCCCccc-ccccchhh
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
+.+|.|+.|++.|.... |..|+..|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H 35 (44)
T 2en7_A 10 MKPYVCNECGKAFRSKSYLIIHTRTH 35 (44)
T ss_dssp SSSSCCTTTCCCCSSHHHHHHHHTTT
T ss_pred CcCeECCCCCCccCCHHHHHHHhhhc
Confidence 34689999999999955 99998777
No 100
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.34 E-value=4.5 Score=30.08 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 34 (43)
T 2yrm_A 8 NGAFFCNECDCRFSEEASLKRHTLQTH 34 (43)
T ss_dssp SCCBCCSSSCCCBSSHHHHHHHHHHHT
T ss_pred CCCEECCCCCCeeCChHHHHHHHHhhC
Confidence 45689999999999965 999988774
No 101
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.30 E-value=4.6 Score=29.65 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 9 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 35 (42)
T 2eos_A 9 EKPYPCEICGTRFRHLQTLKSHLRIHT 35 (42)
T ss_dssp SCCBCCSSSCCCBSSHHHHHHHTTTTS
T ss_pred CCCEECCCCCCccCCHHHHHHHHHhcC
Confidence 44689999999999955 999988774
No 102
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.15 E-value=3.4 Score=31.03 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+..|.|+.|++.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2emi_A 10 ERHYECSECGKAFIQKSTLSMHQRIHR 36 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHGGGC
T ss_pred CCCCCCCCCCcccCCHHHHHHHHhHhC
Confidence 44689999999999955 999988884
No 103
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=51.01 E-value=4.5 Score=33.62 Aligned_cols=27 Identities=22% Similarity=0.513 Sum_probs=21.8
Q ss_pred CCCcccccccCCCCCccc-ccccchhhH
Q psy16215 948 DPTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 948 ~~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
.+..|.|+.|++.|.... |..|+-.|-
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~ 41 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHT 41 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHC
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcC
Confidence 345689999999999855 999988884
No 104
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=50.99 E-value=7.3 Score=43.41 Aligned_cols=28 Identities=7% Similarity=0.034 Sum_probs=23.9
Q ss_pred cccccCCHHHHHHHHHhCCCccchhhhhC
Q psy16215 248 KKVRHLGGKLGDEVVETLQCSTMLELEKF 276 (1041)
Q Consensus 248 ~kIpGIG~K~a~rLL~~LGI~TIGDLa~L 276 (1041)
..|||||+++++++ ...||+|+.||...
T Consensus 99 ~~v~GiG~k~a~~l-~~~Gi~tledL~~a 126 (335)
T 2bcq_A 99 SNIWGAGTKTAQMW-YQQGFRSLEDIRSQ 126 (335)
T ss_dssp HTSTTCCHHHHHHH-HHTTCCSHHHHHHH
T ss_pred hcCCCcCHHHHHHH-HHcCCCCHHHHHHH
Confidence 48999999999985 55599999999863
No 105
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.92 E-value=3.4 Score=30.24 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=21.6
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 34 (41)
T 2ept_A 8 QRVYECQECGKSFRQKGSLTLHERIHT 34 (41)
T ss_dssp CCCEECSSSCCEESSHHHHHHHGGGCC
T ss_pred CCCeECCCCCCCcCCHHHHHHHHHHhC
Confidence 45689999999999965 999988773
No 106
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=50.87 E-value=6.2 Score=44.43 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=23.9
Q ss_pred ccccccCCHHHHHHHHHhCCCccchhhhh
Q psy16215 247 IKKVRHLGGKLGDEVVETLQCSTMLELEK 275 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~LGI~TIGDLa~ 275 (1041)
+..|||||+++++++ ...||+|+.||..
T Consensus 104 l~~I~GvG~kta~~l-~~~Gi~tledL~~ 131 (360)
T 2ihm_A 104 FTQVFGVGVKTANRW-YQEGLRTLDELRE 131 (360)
T ss_dssp HHTSTTCCHHHHHHH-HHTTCCSHHHHHT
T ss_pred HhCCCCCCHHHHHHH-HHcCCCCHHHHHh
Confidence 458999999999995 4559999999984
No 107
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.76 E-value=5.1 Score=30.01 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=21.9
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2ytn_A 10 KKPYKCNECGKVFTQNSHLARHRGIHT 36 (46)
T ss_dssp CSSCBCTTTCCBCSSHHHHHHHGGGTS
T ss_pred CcCeECCCCCCeeCCHHHHHHHhhhcC
Confidence 45689999999999966 999988774
No 108
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.46 E-value=4.3 Score=30.53 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eoh_A 10 KKPYECKECRKTFIQIGHLNQHKRVHT 36 (46)
T ss_dssp SCSCCCSSSCCCCSSHHHHHHHHHHCS
T ss_pred CCCcCCCCcCchhCCHHHHHHHHHHhC
Confidence 45689999999999955 999988773
No 109
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.41 E-value=4.7 Score=30.31 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2en9_A 10 KKLFKCNECKKTFTQSSSLTVHQRIHT 36 (46)
T ss_dssp SCCCBCTTTCCBCSSHHHHHHHHHHHT
T ss_pred CCCEECCccCcccCCHHHHHHHHHHcC
Confidence 45689999999999966 999998884
No 110
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.38 E-value=4.9 Score=30.19 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=22.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhHH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHfA 975 (1041)
+.+|.|+.|++.|.... |..|+-.|-.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 37 (46)
T 2emz_A 10 ERPFKCNECGKGFGRRSHLAGHLRLHSR 37 (46)
T ss_dssp CCSCCCSSSCCCCSSHHHHHHHHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHhCC
Confidence 45689999999999955 9999998864
No 111
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.19 E-value=4.4 Score=30.30 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytr_A 10 EKPYKCNECGKAFSQTSKLARHQRIHT 36 (46)
T ss_dssp CCTTCCTTTCCCCSSHHHHHHHHTTTT
T ss_pred CcCcCCCCCCCccCCHHHHHHHHHhcC
Confidence 45689999999999966 999998874
No 112
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.42 E-value=4.5 Score=30.46 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCcccccccCCCCCccc-ccccchhhHH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHfA 975 (1041)
+.+|.|+.|++.|.... |..|+..|-.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 37 (46)
T 2ytm_A 10 EKPYKCMECGKAFGDNSSCTQHQRLHTG 37 (46)
T ss_dssp CCSSSBTTTTBCCSSHHHHHHHHHHHHS
T ss_pred CCCcCCCCCCchhCCHHHHHHHHHHcCC
Confidence 44689999999999965 9999988853
No 113
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=49.22 E-value=3.4 Score=31.55 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCCcccccccCCCCCccc-ccccchhhH
Q psy16215 948 DPTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 948 ~~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
.+.+|.|+.|++.|.... |..|+..|-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (48)
T 2epr_A 9 TRKQVACEICGKIFRDVYHLNRHKLSHS 36 (48)
T ss_dssp CCCSEEETTTTEEESSHHHHHHHGGGSC
T ss_pred CCcCeeCCCCCcccCCHHHHHHHHHhcC
Confidence 345689999999999855 999998874
No 114
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.11 E-value=5.8 Score=29.68 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=22.1
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytg_A 10 EKPFKCGECGKSYNQRVHLTQHQRVHT 36 (46)
T ss_dssp CCSEECTTTCCEESSSHHHHTTGGGGS
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcC
Confidence 44689999999999966 999998884
No 115
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=48.99 E-value=4.2 Score=27.07 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=18.7
Q ss_pred cccccccCCCCCccc-cccc-chhh
Q psy16215 951 KIICDKCSQPIDINE-LQEH-QDYH 973 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH-~DyH 973 (1041)
+|.|+.||+.|.... |..| +-.|
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~~H 26 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLLIRHAQKIH 26 (30)
T ss_dssp CSBCTTTCCBCSSSHHHHHHHTTTS
T ss_pred CcCCcccCcccCChHHHHHHHHHHc
Confidence 478999999999855 8888 6655
No 116
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=48.73 E-value=3.3 Score=31.36 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=21.0
Q ss_pred CCcccccccCCCCCccc-ccccchhh
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
+-+|.|+.||+.|.... |..|+-||
T Consensus 6 ekp~~C~~CgK~F~~~s~L~~H~py~ 31 (36)
T 1fv5_A 6 PARFMCLPCGIAFSSPSTLEAHQAYY 31 (36)
T ss_dssp CCCCEETTTTEECSCHHHHHHHHHHT
T ss_pred ccCeECCCCCCccCCHhHccCcCCeE
Confidence 45699999999999965 99998665
No 117
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=48.57 E-value=6.2 Score=29.51 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2em0_A 10 EKTWKCRECDMCFSQASSLRLHQNVHV 36 (46)
T ss_dssp CCCCCCSSSCCCCSSHHHHHHHGGGGS
T ss_pred CcCeECCCCCcccCCHHHHHHHHHHcC
Confidence 44689999999999965 999988873
No 118
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.42 E-value=4.5 Score=30.34 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.1
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2em7_A 10 EKPYKCEECGKGFICRRDLYTHHMVHT 36 (46)
T ss_dssp CCSEECSSSCCEESCHHHHHHHGGGGT
T ss_pred CcCccCCCccchhCCHHHHHHHHHHhC
Confidence 45689999999999955 999998884
No 119
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.34 E-value=4.2 Score=30.47 Aligned_cols=27 Identities=26% Similarity=0.472 Sum_probs=22.3
Q ss_pred CCCcccccccCCCCCccc-ccccchhhH
Q psy16215 948 DPTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 948 ~~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
.+.+|.|+.|++.|.... |..|+..|-
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ep0_A 9 GEKPYKCDVCHKSFRYGSSLTVHQRIHT 36 (46)
T ss_dssp TCCSEECSSSCCEESSHHHHHHHHTTTS
T ss_pred CCCCeeCcccCcccCChHHHHHHHHHhC
Confidence 345689999999999955 999988874
No 120
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=48.01 E-value=3.6 Score=30.08 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=21.5
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 9 ~~~~~C~~C~k~f~~~~~l~~H~~~H~ 35 (42)
T 2epc_A 9 ETPYLCGQCGKSFTQRGSLAVHQRSCS 35 (42)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHHTT
T ss_pred CCCeECCCCCcccCCHHHHHHHhhhcC
Confidence 44689999999999955 999988774
No 121
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.82 E-value=5.5 Score=29.76 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.||+.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eov_A 10 EKPYKCSDCGKSFTWKSRLRIHQKCHT 36 (46)
T ss_dssp CCSCBCSSSCCBCSSHHHHHHHHHHHS
T ss_pred CCCccCCccChhhCCHHHHHHHHHhcC
Confidence 34689999999999955 999988884
No 122
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.60 E-value=4.2 Score=29.79 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=22.5
Q ss_pred CCcccccccCCCCCccc-ccccchhhHH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHfA 975 (1041)
+.+|.|+.|++.|.... |..|+..|-.
T Consensus 9 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 36 (42)
T 2en2_A 9 EKPYKCETCGARFVQVAHLRAHVLIHTG 36 (42)
T ss_dssp SCSEECTTTCCEESSHHHHHHHTHHHHS
T ss_pred CCCEeCCCcChhhCCHHHHHHHHHHcCC
Confidence 44689999999999965 9999988853
No 123
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.09 E-value=4.5 Score=30.40 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2emf_A 10 GKHFECTECGKAFTRKSTLSMHQKIHT 36 (46)
T ss_dssp SCCEECSSSCCEESCHHHHHHHGGGTS
T ss_pred CCCeECCCCCchhCCHHHHHHHHHHhC
Confidence 45689999999999966 999998874
No 124
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.99 E-value=5.4 Score=29.86 Aligned_cols=26 Identities=23% Similarity=0.499 Sum_probs=21.4
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq1_A 10 EKPYKCNECGKAFRAHSNLTTHQVIHT 36 (46)
T ss_dssp SCCCCCTTTTCCCSSHHHHHHHHTTTC
T ss_pred CCCeECCcCChhhCCHHHHHHHHHHhC
Confidence 45689999999999955 999987773
No 125
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.96 E-value=3.4 Score=30.93 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=22.0
Q ss_pred CCCcccccccCCCCCccc-ccccchhhH
Q psy16215 948 DPTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 948 ~~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
.+.+|.|+.|++.|.... |..|+..|-
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (45)
T 2epu_A 9 GQKPFECTHCGKSFRAKGNLVTHQRIHT 36 (45)
T ss_dssp SCCSEEETTTTEEESSHHHHHHHHTTTS
T ss_pred CCcCccCCCCCCccCChHHHHHHHHHhC
Confidence 345689999999999955 999988774
No 126
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.59 E-value=4.5 Score=30.25 Aligned_cols=26 Identities=23% Similarity=0.548 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2yts_A 10 EKPYICNECGKSFIQKSHLNRHRRIHT 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHGGGTS
T ss_pred CcCEECCCCChhhCChHHHHHHHHhcC
Confidence 44689999999999965 999988873
No 127
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.58 E-value=5.5 Score=29.04 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=21.3
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 34 (42)
T 2yte_A 8 EKPYSCAECKETFSDNNRLVQHQKMHT 34 (42)
T ss_dssp CCSCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred CCCeECCCCCCccCCHHHHHHHHHHhC
Confidence 34689999999999955 898987774
No 128
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.58 E-value=6.2 Score=29.43 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+.-|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ep1_A 10 EKPYECSDCGKSFIKKSQLHVHQRIHT 36 (46)
T ss_dssp CCSSCCSSSCCCCSSHHHHHHHHGGGS
T ss_pred CCCcCCCCCCchhCCHHHHHHHHHHhC
Confidence 44689999999999955 999988774
No 129
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=46.57 E-value=4.2 Score=30.55 Aligned_cols=26 Identities=27% Similarity=0.581 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2emj_A 10 EKPFECAECGKSFSISSQLATHQRIHT 36 (46)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHhC
Confidence 45689999999999965 999998884
No 130
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.51 E-value=5.5 Score=29.90 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=21.5
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2em6_A 10 EKCYKCDVCGKEFSQSSHLQTHQRVHT 36 (46)
T ss_dssp CCCCBCSSSCCBCSSHHHHHHHHTTTS
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcC
Confidence 44689999999999955 999988773
No 131
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.38 E-value=5.4 Score=29.86 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=22.2
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2yu8_A 10 EKPYKCNECGKVFTQNSHLARHRRVHT 36 (46)
T ss_dssp CSSEECSSSCCEESSSHHHHHHTHHHH
T ss_pred CCCeECCcCCchhCCHHHHHHHHHhcC
Confidence 45689999999999966 999998885
No 132
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.05 E-value=5.7 Score=29.80 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytq_A 10 EKPYGCSECGKAFSSKSYLIIHMRTHS 36 (46)
T ss_dssp CCSCBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred CCCcCCCccChhhCChHHHHHHHHHhC
Confidence 45689999999999965 999988774
No 133
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.05 E-value=4.8 Score=29.86 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (44)
T 2eox_A 10 SKSYNCNECGKAFTRIFHLTRHQKIHT 36 (44)
T ss_dssp CCCEEETTTTEEESSSHHHHTTHHHHC
T ss_pred CCCeECcccCcccCCHHHHHHHHHHhC
Confidence 44689999999999966 999998874
No 134
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=46.01 E-value=12 Score=42.98 Aligned_cols=49 Identities=6% Similarity=0.140 Sum_probs=33.4
Q ss_pred ccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHcCC
Q psy16215 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGI 300 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aRGi 300 (1041)
|+.|||||+..+++||+.+| |+.-+...+.++|+. -| .|..-.+...|.
T Consensus 470 LtAIaGIGp~tAeRLLEkFG--SVe~Vm~AteDELRe-dG--IGekqarrI~gl 518 (685)
T 4gfj_A 470 LISIRGIDRERAERLLKKYG--GYSKVREAGVEELRE-DG--LTDAQIRELKGL 518 (685)
T ss_dssp HHTSTTCCHHHHHHHHHHHT--SHHHHHHSCHHHHHH-TT--CCHHHHHHHHTC
T ss_pred eeccCCCCHHHHHHHHHHhc--CHHHHHhCCHHHHHH-cc--ccHHHHHHHhhH
Confidence 56799999999999999998 556666667777744 44 233334444443
No 135
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=46.00 E-value=7.7 Score=33.20 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCcccccccCCCCCccc-ccccchhhHHhhh
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHFALEL 978 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHfAkdL 978 (1041)
+.+|.|+.|++.|.... |..|+..|-...+
T Consensus 11 ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~ 41 (66)
T 2epp_A 11 AGILPCGLCGKVFTDANRLRQHEAQHGVTSL 41 (66)
T ss_dssp CCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred ccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence 45699999999999955 9999999976544
No 136
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=45.87 E-value=5.1 Score=29.93 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2em9_A 10 EKPYNCKECGKSFRWASCLLKHQRVHS 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHGGGGT
T ss_pred CcCeECCccccccCChHHHHHHHHHhC
Confidence 45689999999999955 999998884
No 137
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=45.84 E-value=4.6 Score=29.53 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=21.4
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 34 (42)
T 2el5_A 8 ENPYECSECGKAFNRKDQLISHQRTHA 34 (42)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHGGGC
T ss_pred CCCccCCCcChhhCCHHHHHHHHHhcC
Confidence 34689999999999955 999987774
No 138
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.55 E-value=4.7 Score=30.08 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.3
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (44)
T 2epv_A 10 EKPYECNECGKAFIWKSLLIVHERTHA 36 (44)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHGGGS
T ss_pred CcCeECCCCCcccCchHHHHHHHhHhc
Confidence 45689999999999854 999987774
No 139
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.33 E-value=5.9 Score=29.64 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2epz_A 10 EKPFDCIDCGKAFSDHIGLNQHRRIHT 36 (46)
T ss_dssp CCSBCCTTTCCCBSSHHHHHHHHTTTT
T ss_pred CCCeECCCCCceeCCHHHHHHHHHHhC
Confidence 45689999999999965 999988774
No 140
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.16 E-value=4.6 Score=30.18 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=22.2
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|.
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eor_A 10 EKPYNCEECGKAFIHDSQLQEHQRIHT 36 (46)
T ss_dssp CCSEECTTTCCEESSHHHHHHHHHHHH
T ss_pred CcCccCCCCCCCcCCHHHHHHHHHhcC
Confidence 45689999999999955 999998885
No 141
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.99 E-value=4.7 Score=30.30 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=21.9
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2em4_A 10 QRPYECIECGKAFKTKSSLICHRRSHT 36 (46)
T ss_dssp SSSEECSSSCCEESSHHHHHHHHHHHS
T ss_pred CcCcCCCCCCCccCCHHHHHHHHHhcC
Confidence 45689999999999955 999988884
No 142
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.48 E-value=4.8 Score=30.26 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=21.9
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2em2_A 10 EKPFKCKECGKAFRQNIHLASHLRIHT 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHHHC
T ss_pred CCCEECCcCCchhCCHHHHHHHHHHhC
Confidence 44689999999999955 999998884
No 143
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.34 E-value=5.5 Score=29.75 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq4_A 10 EKLYNCKECGKSFSRAPCLLKHERLHS 36 (46)
T ss_dssp CCCCCBTTTTBCCSCHHHHHHHHHHCC
T ss_pred CCCeECCCCCCccCchHHHHHHHHhcC
Confidence 45689999999999966 999988774
No 144
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.32 E-value=5.5 Score=29.53 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=21.5
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+..|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (44)
T 2emb_A 10 RKRYECSKCQATFNLRKHLIQHQKTHA 36 (44)
T ss_dssp CSSEECTTTCCEESCHHHHHHHGGGGC
T ss_pred CCCeECCCCCCccCCHHHHHHHHHHcC
Confidence 34689999999999955 999988774
No 145
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.17 E-value=4.7 Score=30.29 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2em8_A 10 EKPYKCVECGKGYKRRLDLDFHQRVHT 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHHHH
T ss_pred CCCeECcccCchhCCHHHHHHHHHHHc
Confidence 45689999999999955 999998885
No 146
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.15 E-value=5 Score=29.74 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=21.6
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (44)
T 2yu5_A 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36 (44)
T ss_dssp CCSEECSSSSCEESSSHHHHHHHHHCC
T ss_pred CCCeECCCCCchhCCHHHHHHHhHhcC
Confidence 44689999999999966 999988773
No 147
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=44.09 E-value=7.1 Score=26.60 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=20.3
Q ss_pred ccccc--ccCCCCCccc-ccccchhhH
Q psy16215 951 KIICD--KCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 951 ~~~C~--rC~~~v~~~E-~~EH~DyHf 974 (1041)
+|.|+ .||+.|.... |..|+..|-
T Consensus 3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~ 29 (32)
T 1zfd_A 3 PYSCDHPGCDKAFVRNHDLIRHKKSHQ 29 (32)
T ss_dssp SBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred CCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence 57899 9999999855 999988874
No 148
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.90 E-value=5 Score=30.14 Aligned_cols=26 Identities=23% Similarity=0.572 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eoy_A 10 EKCFKCNKCEKTFSCSKYLTQHERIHT 36 (46)
T ss_dssp SCCEECSSSCCEESSSHHHHHHHTTCC
T ss_pred CCCEECcCCCCcCCCHHHHHHHHHHcC
Confidence 44689999999999966 999988874
No 149
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.88 E-value=4.9 Score=29.81 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.++.|+.||+.|.... |..|+-.|-
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 34 (44)
T 2emx_A 8 EKPFGCSCCEKAFSSKSYLLVHQQTHA 34 (44)
T ss_dssp CCCEECSSSSCEESSHHHHHHHHHHHT
T ss_pred CcCccCCCCCcccCCHHHHHHHHHHhC
Confidence 34689999999999955 999998884
No 150
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.77 E-value=6.7 Score=29.35 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eoq_A 10 EKPFKCDICGKSFCGRSRLNRHSMVHT 36 (46)
T ss_dssp SCSCCCSSSCCCCSSHHHHHHHHHHTT
T ss_pred CCCcCCCcCCchhCCHHHHHHHHHHcC
Confidence 45689999999999955 999988874
No 151
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.63 E-value=5 Score=30.07 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.3
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2emh_A 10 ERPYICTVCGKAFTDRSNLIKHQKIHT 36 (46)
T ss_dssp CCSEECTTTCCEESSHHHHHHHHHHHH
T ss_pred CCCcCCCCCCchhCCHHHHHHHHHhcC
Confidence 45689999999999965 999998885
No 152
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.61 E-value=6.5 Score=29.33 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=21.6
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eop_A 10 EKPHECRECGKSFSFNSQLIVHQRIHT 36 (46)
T ss_dssp CCSCBCTTTCCBCSSHHHHHHHHTTTT
T ss_pred CCCeeCCCCCchhCCHHHHHHHHHHcC
Confidence 44689999999999965 999988774
No 153
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.54 E-value=5.1 Score=29.93 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=21.6
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.||+.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2epw_A 10 EKPCKCTECGKAFCWKSQLIMHQRTHV 36 (46)
T ss_dssp CCSEECSSSCCEESSSHHHHHHHHHCC
T ss_pred CCCeeCCCCCCccCCHHHHHHHHHHhC
Confidence 34689999999999966 999988773
No 154
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.28 E-value=5 Score=30.16 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=21.9
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2yto_A 10 EKPYKCSDCGKAFTRKSGLHIHQQSHT 36 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHT
T ss_pred CCCEECcccCCccCCHhHHHHHHHHcC
Confidence 44689999999999955 999998884
No 155
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.24 E-value=4.7 Score=30.12 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2yrj_A 10 EKPYRCGECGKAFAQKANLTQHQRIHT 36 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred CCCeECCCCCCccCCHHHHHHHHHHcC
Confidence 45689999999999965 999988774
No 156
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.05 E-value=5 Score=29.97 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.5
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~~H~~~H~ 34 (45)
T 2epq_A 8 EKPYSCPVCGLRFKRKDRMSYHVRSHD 34 (45)
T ss_dssp CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred CCCCcCCCCCcccCCHHHHHHHHHHcc
Confidence 45689999999998855 999988774
No 157
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=43.02 E-value=7.2 Score=29.23 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2emk_A 10 EKPYECKECGKAFSQTTHLIQHQRVHT 36 (46)
T ss_dssp SCSCBCSSSCCBCSCHHHHHHHHHHHS
T ss_pred CCceECCCCCchhCCHHHHHHHHHHcC
Confidence 44689999999999965 999988773
No 158
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.89 E-value=5 Score=30.08 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ene_A 10 EKPYKCNECGKVFRHNSYLSRHQRIHT 36 (46)
T ss_dssp SSSEECSSSCCEESSHHHHHHHHTTTC
T ss_pred CCCeECCCCCchhCChHHHHHHHhhcC
Confidence 45689999999999955 999988873
No 159
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.83 E-value=4.9 Score=30.18 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=21.6
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|.
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2ytp_A 10 ERHYECSECGKAFARKSTLIMHQRIHT 36 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred CCCeECCcCCcccCCHHHHHHHHHHhC
Confidence 45689999999999955 999988774
No 160
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.83 E-value=5.1 Score=29.99 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2em3_A 10 EKPYECKVCSKAFTQKAHLAQHQKTHT 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHHHC
T ss_pred CcCeECCCCCcccCCHHHHHHHHHHhC
Confidence 44689999999999966 999988873
No 161
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.73 E-value=11 Score=31.52 Aligned_cols=26 Identities=23% Similarity=0.576 Sum_probs=20.3
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+..|.|+.|++.|.... |..|+-.|-
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~ 42 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRTHT 42 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHcC
Confidence 35688999999988844 888887774
No 162
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.41 E-value=5.5 Score=29.81 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eml_A 10 EKPYECSVCGKAFSHRQSLSVHQRIHS 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHGGGS
T ss_pred CCCeeCCCcCCccCCHHHHHHHHHHhc
Confidence 44689999999999955 999988874
No 163
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=42.33 E-value=5.6 Score=29.79 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ema_A 10 EKRYKCNECGKVFSRNSQLSQHQKIHT 36 (46)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHTGGG
T ss_pred CcCcCCCCCcchhCCHHHHHHHHHhcC
Confidence 45689999999999955 999998884
No 164
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.86 E-value=4.8 Score=30.07 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=21.4
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytf_A 10 EKPFECSECQKAFNTKSNLIVHQRTHT 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHTSC
T ss_pred CCCcCCCCCCcccCCHHHHHHHHHHhC
Confidence 45689999999999955 999987773
No 165
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.76 E-value=5.3 Score=29.82 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2eoe_A 10 EKPYKCNECGKVFTQNSHLANHQRIHT 36 (46)
T ss_dssp CCSSEETTTTEECSSHHHHHHHHGGGS
T ss_pred CCCeECCCcChhhCCHHHHHHHHHHcC
Confidence 44689999999999955 999988874
No 166
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=41.75 E-value=15 Score=49.30 Aligned_cols=57 Identities=4% Similarity=0.082 Sum_probs=48.7
Q ss_pred cCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhh--hhhHHHHHHHHcCCC
Q psy16215 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE--EKTASWLYYIARGID 301 (1041)
Q Consensus 244 ~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG--~k~G~~L~~~aRGiD 301 (1041)
..||..|||||+..+++ |...||+|+.||+.+++..+...++ +..+..+.+.++...
T Consensus 1556 ~~~L~qip~i~~~~ar~-l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P 1614 (1724)
T 4f92_B 1556 DSYLKQLPHFTSEHIKR-CTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 1614 (1724)
T ss_dssp SCGGGGSTTCCHHHHHH-HHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHHSC
T ss_pred CcCEecCCCCCHHHHHH-HHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHHhCC
Confidence 36899999999999988 7899999999999999999988876 556777888887653
No 167
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.70 E-value=5.1 Score=30.00 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytj_A 10 EKPYICAECGKAFTIRSNLIKHQKIHT 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred CcCeECCCCChhhCCHHHHHHHHHHcC
Confidence 44689999999999965 999988774
No 168
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=41.58 E-value=16 Score=33.22 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=23.0
Q ss_pred ccccccCCHHHHHHHHHhC----CCccchhhhhC
Q psy16215 247 IKKVRHLGGKLGDEVVETL----QCSTMLELEKF 276 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~L----GI~TIGDLa~L 276 (1041)
+..|||||++++++|++.. .+.++.||.++
T Consensus 42 L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v 75 (98)
T 2edu_A 42 LRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERV 75 (98)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGS
T ss_pred HHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhC
Confidence 3578899999999887755 36678887765
No 169
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=41.54 E-value=4.6 Score=29.19 Aligned_cols=26 Identities=23% Similarity=0.499 Sum_probs=20.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.||+.|.... |..|+--|-
T Consensus 4 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 30 (39)
T 1njq_A 4 PRSYTCSFCKREFRSAQALGGHMNVHR 30 (39)
T ss_dssp SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred CCceECCCCCcccCCHHHHHHHHHHcC
Confidence 34689999999999855 888887663
No 170
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.46 E-value=6.6 Score=29.36 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCcccccccCCCCCccc-ccccchhhHH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHfA 975 (1041)
+.+|.|+.|++.|.... |..|+-.|-.
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~ 37 (46)
T 2en3_A 10 EKPFQCKECGMNFSWSCSLFKHLRSHER 37 (46)
T ss_dssp CCSEECSSSCCEESSSHHHHHHHHHHHH
T ss_pred CCCeeCcccChhhCCHHHHHHHHHHhCC
Confidence 44689999999999966 9999988854
No 171
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.43 E-value=5.7 Score=29.63 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=21.9
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2emm_A 10 ERPHKCNECGKSFIQSAHLIQHQRIHT 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHHHS
T ss_pred CCCeeCCCCChhhCCHHHHHHHHHHhC
Confidence 45689999999999966 999988874
No 172
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.27 E-value=6.3 Score=32.32 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=17.9
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+..|.|+.|++.|.... |..|+-.|-
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 33 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHC 33 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcC
Confidence 34577888887777744 777777663
No 173
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.17 E-value=5.7 Score=29.72 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2yso_A 10 EKSHQCRECGEIFFQYVSLIEHQVLHM 36 (46)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHHHS
T ss_pred CCCEEccccChhhCCHHHHHHHHHHhC
Confidence 45689999999999955 999988874
No 174
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.13 E-value=5.7 Score=29.63 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=21.6
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.++.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eow_A 10 EKPYKCNECGKAFRARSSLAIHQATHS 36 (46)
T ss_dssp CCCEECTTSCCEESSHHHHHHHHHHHC
T ss_pred CCCeeccccCChhcCHHHHHHHHHHcC
Confidence 44689999999999955 999988774
No 175
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.07 E-value=5.5 Score=29.83 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ep3_A 10 EKPYRCAECGKAFTDRSNLFTHQKIHT 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHTTTT
T ss_pred CCCeECCCCCchhCCHHHHHHHHHHcC
Confidence 45689999999999955 999988774
No 176
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=40.82 E-value=5.1 Score=33.43 Aligned_cols=27 Identities=19% Similarity=0.468 Sum_probs=19.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhHH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHfA 975 (1041)
|-+|.|+.||+.|.... |..|+--|-.
T Consensus 2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ 29 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDASGLSRHRRAHLG 29 (60)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHHHHT
T ss_pred CCCccCCCCCCEeCCHHHHHHHHHHhCC
Confidence 34678888888888744 8888887753
No 177
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.58 E-value=5.5 Score=29.89 Aligned_cols=26 Identities=23% Similarity=0.562 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.||+.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2em5_A 10 TKSHQCHECGRGFTLKSHLNQHQRIHT 36 (46)
T ss_dssp SCSEECSSSCCEESSHHHHHHHHTTTS
T ss_pred CCCeECCcCCCccCCHHHHHHHHHHhC
Confidence 45689999999999966 999988873
No 178
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.48 E-value=6 Score=29.61 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytk_A 10 EKPYKCNECGKVFTQNSHLTNHWRIHT 36 (46)
T ss_dssp SCSEECSSSCCEESSHHHHHHHHHHHS
T ss_pred CCCEeCCcCCCccCCHHHHHHHHHHHC
Confidence 45689999999999955 999988873
No 179
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.47 E-value=4.8 Score=29.77 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.5
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (44)
T 2eoj_A 10 ENPYECCECGKVFSRKDQLVSHQKTHS 36 (44)
T ss_dssp CCSCEETTTTEECSSHHHHHHHHTTSS
T ss_pred CcCeeCCCCCCccCCHHHHHHHHHHcC
Confidence 34689999999999955 999988774
No 180
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.25 E-value=6.3 Score=29.39 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eme_A 10 EKPYVCDYCGKAFGLSAELVRHQRIHT 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHGGGC
T ss_pred CCCeECCCCChhhCCHHHHHHHHHhcC
Confidence 34689999999999965 999988873
No 181
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=40.24 E-value=6.5 Score=29.48 Aligned_cols=26 Identities=23% Similarity=0.384 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2el6_A 10 VNPYKCSQCEKSFSGKLRLLVHQRMHT 36 (46)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcC
Confidence 45689999999999955 999988874
No 182
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=40.14 E-value=6.4 Score=29.38 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=21.6
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2el4_A 10 VKPYGCSQCAKTFSLKSQLIVHQRSHT 36 (46)
T ss_dssp CCSEECSSSSCEESSHHHHHHHGGGSS
T ss_pred CCceECCCCCchhCCHHHHHHHHHHhC
Confidence 44689999999999965 999988773
No 183
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.13 E-value=4.6 Score=30.24 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2en6_A 10 EKPYGCNECGKTFSQKSILSAHQRTHT 36 (46)
T ss_dssp SCCEEETTTTEEESSHHHHHHHHHHHS
T ss_pred CcCeECCCCCcccCchHHHHHHHHHcC
Confidence 45689999999999955 999998884
No 184
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.03 E-value=6.2 Score=29.62 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=22.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhHH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHfA 975 (1041)
+.+|.|+.||+.|.... |..|+..|-.
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~ 37 (46)
T 2eoo_A 10 ERPYGCNECGKNFGRHSHLIEHLKRHFR 37 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred CCCEEccccCcccCCHHHHHHHHHHHcC
Confidence 44689999999999965 9999988853
No 185
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=40.01 E-value=5.9 Score=26.89 Aligned_cols=23 Identities=26% Similarity=0.658 Sum_probs=19.1
Q ss_pred ccccc--ccCCCCCccc-ccccchhh
Q psy16215 951 KIICD--KCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 951 ~~~C~--rC~~~v~~~E-~~EH~DyH 973 (1041)
+|.|+ .||+.|.... |..|+.-|
T Consensus 2 p~~C~~~~C~k~f~~~~~L~~H~~~H 27 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTRSDELQRHKRTH 27 (31)
T ss_dssp CCBCCSTTCCCBCSSHHHHHHHHTTT
T ss_pred CcCCcCCCCCcccCCHhHHHHHHHHh
Confidence 47897 9999999955 99998776
No 186
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=39.70 E-value=30 Score=32.42 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=42.7
Q ss_pred cchHHHhhhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHc
Q psy16215 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298 (1041)
Q Consensus 235 p~~v~~fL~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aR 298 (1041)
|+++.++|.. .|++..+. +.||..+-.||..+.+++|+..+| ..|.+||..+.
T Consensus 26 p~EV~~WL~~------kgFS~~tv----~~Lg~ltGaqLf~Ltk~eL~~vCg-~EG~RlysqL~ 78 (99)
T 1wwu_A 26 PDEVRAWLEA------KAFSPRIV----ENLGILTGPQLFSLNKEELKKVCG-EEGVRVYSQLT 78 (99)
T ss_dssp HHHHHHHHHH------HTCCTTHH----HHTTSSCHHHHHTCCHHHHHHHHT-TTHHHHHHHHH
T ss_pred HHHHHHHHHH------cCCCHHHH----HHHcCCCHHHHHcCCHHHHHHHCc-chhHHHHHHHH
Confidence 5677777753 36665554 458999999999999999999999 78999988765
No 187
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=39.69 E-value=19 Score=33.40 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=25.4
Q ss_pred ccccccCCHHHHHHHHHhCCCccchhhhhC
Q psy16215 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKF 276 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~LGI~TIGDLa~L 276 (1041)
+..|||||+++++++...=++.++.||.+.
T Consensus 28 L~~lpGIG~~~A~~IV~~GpF~s~edL~~V 57 (97)
T 3arc_U 28 FIQYRGLYPTLAKLIVKNAPYESVEDVLNI 57 (97)
T ss_dssp GGGSTTCTTHHHHHHHHHCCCSSGGGGGGC
T ss_pred HhHCCCCCHHHHHHHHHcCCCCCHHHHHhc
Confidence 457899999999998886678899999875
No 188
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.68 E-value=5.5 Score=29.82 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=21.5
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2enc_A 10 EKPFKCEECGKGFYTNSQCYSHQRSHS 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred CCCcCCCCCCCcCCChHHHHHHHHHhC
Confidence 44689999999999955 999988773
No 189
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.62 E-value=6.3 Score=29.47 Aligned_cols=26 Identities=23% Similarity=0.568 Sum_probs=22.2
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2emp_A 10 VKPYMCNECGKAFSVYSSLTTHQVIHT 36 (46)
T ss_dssp CCSEECSSSCCEESCHHHHHHHHHHHH
T ss_pred CcCeECCCCCchhCCHHHHHHHHHHcC
Confidence 45689999999999966 999998885
No 190
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.62 E-value=5.8 Score=29.69 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ep2_A 10 EKPYECSICGKSFTKKSQLHVHQQIHT 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHTTS
T ss_pred CcCcCCCCCCcccCCHHHHHHHHHHhC
Confidence 45689999999999965 999988774
No 191
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.49 E-value=4.8 Score=30.24 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eoz_A 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36 (46)
T ss_dssp CCSEEETTTTEEESSHHHHHHHHHHHS
T ss_pred CCCeECcccChhhCCHHHHHHHHHHhC
Confidence 44689999999999965 999988874
No 192
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=39.42 E-value=31 Score=30.10 Aligned_cols=48 Identities=21% Similarity=0.164 Sum_probs=38.7
Q ss_pred cccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH--hhhhhHHHHHHHHc
Q psy16215 250 VRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH--FEEKTASWLYYIAR 298 (1041)
Q Consensus 250 IpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr--FG~k~G~~L~~~aR 298 (1041)
..||+...+++ |..-|+.|+.+++..|+..|... |++..+..|...++
T Consensus 11 ~lgI~e~~a~~-L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~ 60 (70)
T 1u9l_A 11 YLDIDEDFATV-LVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 60 (70)
T ss_dssp HHTCCHHHHHH-HHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHH-HHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHH
Confidence 34899989887 78999999999999999999876 44666666666654
No 193
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.34 E-value=5.2 Score=29.88 Aligned_cols=26 Identities=23% Similarity=0.577 Sum_probs=21.3
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2eq3_A 10 EKPYECNQCGKAFSVRSSLTTHQAIHT 36 (46)
T ss_dssp CCSSEETTTTEECSSHHHHHHHHTTSC
T ss_pred CCCeECCCCChhhCCHHHHHHHHHHhC
Confidence 44689999999999955 999987773
No 194
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.12 E-value=5.9 Score=29.66 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2eq0_A 10 EKPYKCHECGKVFRRNSHLARHQLIHT 36 (46)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHTTTC
T ss_pred CCCeECCCCCchhCCHHHHHHHHHHcC
Confidence 45689999999999955 999988774
No 195
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.02 E-value=5.8 Score=29.70 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=21.7
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.||+.|.... |..|+-.|-
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2en1_A 10 EKPFKCEECGKRFTQNSQLHSHQRVHT 36 (46)
T ss_dssp CCSEEETTTTEEESSHHHHHHHGGGGS
T ss_pred CCCeeCCCCCcccCCHHHHHHHHHHcC
Confidence 44689999999999965 999988873
No 196
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.69 E-value=6.5 Score=29.39 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.0
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.||+.|.... |..|+..|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~ 36 (46)
T 2emy_A 10 ENPYECHECGKAFSRKYQLISHQRTHA 36 (46)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHHHT
T ss_pred CcCcCCCCCCcccCcHHHHHHHHHHcC
Confidence 44689999999999955 999998885
No 197
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=38.19 E-value=31 Score=41.42 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=41.5
Q ss_pred CccccccCCHHHHHHHHHhCC-CccchhhhhCCHHHHHH--HhhhhhHHHHHHHH
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQ-CSTMLELEKFSLKQLQS--HFEEKTASWLYYIA 297 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LG-I~TIGDLa~Lp~~~L~k--rFG~k~G~~L~~~a 297 (1041)
.-=+|.|+|.++.++|+ ..| |.++.||..|..+.|.. .||++.+..|+...
T Consensus 447 ~amdI~GlG~~~i~~L~-~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aI 500 (586)
T 4glx_A 447 RAMDVDGMGDKIIDQLV-EKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (586)
T ss_dssp TTTCCTTCCHHHHHHHH-HTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHHHHH-hcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHH
Confidence 44578899999999854 556 69999999999999985 58988888876654
No 198
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.78 E-value=6.4 Score=29.35 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=21.3
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|-
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2en8_A 10 EKSHTCDECGKNFCYISALRIHQRVHM 36 (46)
T ss_dssp CSSEECTTTCCEESSHHHHHHHHTTTC
T ss_pred CCCeECCCcCcccCCHHHHHHHHHHhC
Confidence 44689999999999955 999987773
No 199
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=37.75 E-value=9.4 Score=31.50 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=19.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+..|.
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~H~~~h~ 38 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQHQRVHT 38 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred CCCccCCCCCCccCCHHHHHHHHHhcC
Confidence 45688888888888855 888887774
No 200
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=37.58 E-value=6.7 Score=30.95 Aligned_cols=24 Identities=25% Similarity=0.638 Sum_probs=19.9
Q ss_pred cccccccCCCCCccc-ccccchhhH
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+|.|+.|++.|.... |..|+..|-
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~ 26 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHT 26 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred cCcCCCCccccCCHHHHHHHHHHhC
Confidence 478999999999855 999988884
No 201
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.99 E-value=39 Score=31.68 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=41.7
Q ss_pred cchHHHhhhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHc
Q psy16215 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIAR 298 (1041)
Q Consensus 235 p~~v~~fL~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aR 298 (1041)
|+++.++|.. .|+...+. +.||+.+-.||..+.+++|+..+| .|.+||..+.
T Consensus 36 p~EV~~WL~~------kgFS~~tv----~~Lg~ltGaqLl~Ltk~eL~~vCg--EG~RlysqL~ 87 (99)
T 2e8m_A 36 PEDVKTWLQS------KGFNPVTV----NSLGVLNGAQLFSLNKDELRTVCP--EGARVYSQIT 87 (99)
T ss_dssp TTHHHHHHHH------HTCCHHHH----HHTSSSCHHHHHHCCHHHHHHHCT--THHHHHHHHH
T ss_pred HHHHHHHHHH------cCCCHHHH----HHHcCCCHHHHHcCCHHHHHHHCC--chHHHHHHHH
Confidence 5677777753 36666554 468999999999999999999999 7899988764
No 202
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.71 E-value=7.5 Score=29.06 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.++.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ytd_A 10 EKPYKCSECGKAFHRHTHLNEHRRIHT 36 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHHHT
T ss_pred CcCeECCCCCCeeCChHHHHHHHHHcC
Confidence 44689999999999955 999988874
No 203
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.71 E-value=6.9 Score=28.80 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=21.4
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (44)
T 2eof_A 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36 (44)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHHTT
T ss_pred CCCeECCCCCcccCCHhHHHHHHHHhC
Confidence 44689999999999955 999987774
No 204
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=36.52 E-value=7.4 Score=42.92 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred Cccccc--cCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhh--hhhHHHHHHHHc
Q psy16215 246 SIKKVR--HLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE--EKTASWLYYIAR 298 (1041)
Q Consensus 246 PI~kIp--GIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG--~k~G~~L~~~aR 298 (1041)
||.+++ ||+....++ |+..|+.|+.+++..++..|.+..| ...+..+++.+.
T Consensus 26 ~~~~l~~~g~~~~~~~~-l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~ 81 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKK-LKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAAN 81 (343)
T ss_dssp ---------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHH-HHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHH
Confidence 899998 999999987 7999999999999999999988766 233444555544
No 205
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=36.15 E-value=16 Score=32.14 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=19.4
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
...+.|+.|++.|.... |..|+..|-
T Consensus 15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~ 41 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKSYNLLIHERTHT 41 (106)
T ss_dssp CCCCBCSSSCCBCSSHHHHHHHHHHHC
T ss_pred CcCeECCCCCCccCCHHHHHHHHHHcC
Confidence 44578888888888754 888887774
No 206
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=35.86 E-value=7.6 Score=30.20 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=18.9
Q ss_pred ccccccCCCCCccc-ccccchhhHH
Q psy16215 952 IICDKCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 952 ~~C~rC~~~v~~~E-~~EH~DyHfA 975 (1041)
|.|+.|++.|.... |..|+..|-.
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~ 26 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTD 26 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCC
Confidence 67999999988855 8888877743
No 207
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.67 E-value=5.2 Score=29.94 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=21.5
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+.|++.|.... |..|+-.|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 36 (46)
T 2ysp_A 10 EKPYKCEKCGKGYNSKFNLDMHQKVHT 36 (46)
T ss_dssp CCSEEETTTTEEESCHHHHHHHHTTSC
T ss_pred CCCeECCCCCCccCCHHHHHHHHHhhC
Confidence 44689999999999955 999988774
No 208
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=35.41 E-value=8 Score=30.06 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=20.5
Q ss_pred cccccccCCCCCccc-ccccchhhHH
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyHfA 975 (1041)
.|.|+.|++.|.... |..|+..|-.
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~~h~~ 29 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLRTHTG 29 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHHHHHC
T ss_pred CccCCCCcchhCChHHHHHHHHHcCC
Confidence 588999999999955 9999988853
No 209
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=34.66 E-value=27 Score=34.31 Aligned_cols=30 Identities=13% Similarity=0.146 Sum_probs=25.6
Q ss_pred cccccCCHHHHHHHHHhCCCccchhhhhCC
Q psy16215 248 KKVRHLGGKLGDEVVETLQCSTMLELEKFS 277 (1041)
Q Consensus 248 ~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp 277 (1041)
..+||||++.++++.+.=...++.||.+.+
T Consensus 66 ~~LpGiGp~~A~~II~~GpF~svedL~~V~ 95 (134)
T 1s5l_U 66 IQYRGLYPTLAKLIVKNAPYESVEDVLNIP 95 (134)
T ss_dssp GGSTTCTHHHHHHHHHTCCCSSGGGGGGCT
T ss_pred HHCCCCCHHHHHHHHHcCCCCCHHHHHhCC
Confidence 468999999999988666789999999864
No 210
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=34.52 E-value=7.5 Score=30.43 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=21.2
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+..|.|+.||+.|.... |..|+--|-
T Consensus 22 ~k~~~C~~C~k~f~~~~~L~~H~~~H~ 48 (54)
T 1yui_A 22 EQPATCPICYAVIRQSRNLRRHLELRH 48 (54)
T ss_dssp SCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred CCCccCCCCCcccCCHHHHHHHHHHhc
Confidence 34589999999999855 999987774
No 211
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=33.76 E-value=29 Score=33.18 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=24.2
Q ss_pred CccccccCCHHHHHHHHHhCCCc---cchhhhh
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCS---TMLELEK 275 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~---TIGDLa~ 275 (1041)
-|+.|.|||+.++..++..+||. .++||-.
T Consensus 17 aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~ 49 (114)
T 3r8n_M 17 ALTSIYGVGKTRSKAILAAAGIAEDVKISELSE 49 (114)
T ss_dssp HGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCH
T ss_pred hHhhhcCcCHHHHHHHHHHcCcCcccCcccCCH
Confidence 35789999999999999999996 4555543
No 212
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.36 E-value=6.9 Score=28.02 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=20.0
Q ss_pred CCcccccccCCCCCccc-cccc-chhh
Q psy16215 949 PTKIICDKCSQPIDINE-LQEH-QDYH 973 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH-~DyH 973 (1041)
+.+|.|+.|++.|.... |..| +--|
T Consensus 7 ~k~~~C~~C~k~f~~~~~L~~H~~~~H 33 (37)
T 2elm_A 7 GHLYYCSQCHYSSITKNCLKRHVIQKH 33 (37)
T ss_dssp SCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred CcCeECCCCCcccCCHHHHHHHHHHHc
Confidence 44689999999998855 8888 6655
No 213
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=32.98 E-value=18 Score=32.05 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=21.2
Q ss_pred CCCcccccccCCCCCccc-ccccchhh
Q psy16215 948 DPTKIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 948 ~~d~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
.+..|.|+.|++.|.... |..|+..|
T Consensus 13 ~~~~~~C~~C~~~f~~~~~l~~H~~~H 39 (107)
T 1wjp_A 13 NKEVYQCRLCNAKLSSLLEQGSHERLC 39 (107)
T ss_dssp CCCCCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred CCcCeECCCCCCccCCHHHHHHHHHHC
Confidence 345688999999998855 99999888
No 214
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.47 E-value=9.9 Score=31.70 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=19.9
Q ss_pred CCcccccccCCCCCccc-ccccchhhHH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHfA 975 (1041)
+..|.|+.|++.|.... |..|+..|-.
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~ 32 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWHQRKHAE 32 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred CcCeECCCCCCeeCCHHHHHHHHHHhhc
Confidence 34577888888888744 8888877764
No 215
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.87 E-value=14 Score=27.49 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=21.4
Q ss_pred CCcccccccCCCCCccc-ccccch-hhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQD-YHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~D-yHf 974 (1041)
+.+|.|+.|++.|.... |..|+. .|-
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~~H~ 37 (47)
T 2epx_A 10 KKPYECIECGKAFIQNTSLIRHWRYYHT 37 (47)
T ss_dssp CCSBCCSSSCCCBSSHHHHHHHHTTTTT
T ss_pred CCCEECCccCchhCChHHHHHHhHhhcC
Confidence 34689999999999955 999987 774
No 216
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=30.80 E-value=14 Score=31.79 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=15.9
Q ss_pred CcccccccCCCCCccc-ccccchhhH
Q psy16215 950 TKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 950 d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
..+.|+.|++.|.... |..|+..|.
T Consensus 7 ~~~~C~~C~~~f~~~~~l~~H~~~h~ 32 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRKDKLKTHMRCHT 32 (96)
T ss_dssp CCCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred cCeECCCCCCccCCHHHHHHHHHhcC
Confidence 3466777777776644 666766653
No 217
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=30.24 E-value=6.3 Score=25.86 Aligned_cols=23 Identities=22% Similarity=0.663 Sum_probs=18.9
Q ss_pred ccccc--ccCCCCCccc-ccccchhh
Q psy16215 951 KIICD--KCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 951 ~~~C~--rC~~~v~~~E-~~EH~DyH 973 (1041)
++.|+ .||+.|.... |..|+--|
T Consensus 2 ~~~C~~~~C~k~f~~~~~l~~H~~~H 27 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDRRKLNRHKKIH 27 (29)
T ss_dssp CEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred CCCCcCCcCcCccCCHHHHHHHHHHh
Confidence 47899 9999999854 88888766
No 218
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=29.77 E-value=26 Score=39.78 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=38.7
Q ss_pred ccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHH--hhhhhHHHHHHHH
Q psy16215 247 IKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSH--FEEKTASWLYYIA 297 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~kr--FG~k~G~~L~~~a 297 (1041)
|.+||+||++++++|++.+| ++..+.+.+.++|.+. .|++.|..+.+.+
T Consensus 317 Ls~IPrl~~~iae~Lv~~FG--sLq~Il~AS~eEL~~VeGIGe~rAr~IregL 367 (377)
T 3c1y_A 317 LKTVARIPLSIGYNVVRMFK--TLDQISKASVEDLKKVEGIGEKRARAISESI 367 (377)
T ss_dssp HHHTSCCCHHHHHHHHHHHC--SHHHHTTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHHhC--CHHHHHhCCHHHHHhccCccHHHHHHHHHHH
Confidence 45799999999999998887 7888888888888877 5666666555443
No 219
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.75 E-value=11 Score=29.42 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=21.4
Q ss_pred CCCcccccccCCCCCccc-ccccch-hhH
Q psy16215 948 DPTKIICDKCSQPIDINE-LQEHQD-YHF 974 (1041)
Q Consensus 948 ~~d~~~C~rC~~~v~~~E-~~EH~D-yHf 974 (1041)
.+.+|.|+.|++.|.... |..|+- .|-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~ 37 (54)
T 2eps_A 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHT 37 (54)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHhcC
Confidence 345689999999999855 888975 663
No 220
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.50 E-value=10 Score=26.95 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=21.5
Q ss_pred Cccccc--ccCCCCCccc-ccccchhhHH
Q psy16215 950 TKIICD--KCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 950 d~~~C~--rC~~~v~~~E-~~EH~DyHfA 975 (1041)
.+|.|+ .|++.|.... |..|+..|-.
T Consensus 5 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ 33 (38)
T 1bhi_A 5 KPFLCTAPGCGQRFTNEDHLAVHKHKHEM 33 (38)
T ss_dssp CCEECCCTTTCCEESSHHHHHHHHHHHHT
T ss_pred cceECCCCCCCcccCCHHHHHHHHHHhCC
Confidence 458999 7999999955 9999988853
No 221
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=29.09 E-value=30 Score=34.40 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=30.0
Q ss_pred CCccccccCCHHHHHHHHHhCCCc---cchhhhhCCHHHHHHHh
Q psy16215 245 LSIKKVRHLGGKLGDEVVETLQCS---TMLELEKFSLKQLQSHF 285 (1041)
Q Consensus 245 LPI~kIpGIG~K~a~rLL~~LGI~---TIGDLa~Lp~~~L~krF 285 (1041)
.-|+.|.|||+.++..++..+||. .++||-.-....|....
T Consensus 30 ~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 73 (146)
T 3u5c_S 30 YALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIM 73 (146)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHH
T ss_pred hhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHH
Confidence 457899999999999999999995 56666544344444444
No 222
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.84 E-value=18 Score=31.88 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=21.8
Q ss_pred CCcccccccCCCCC-ccc-ccccchhhHH
Q psy16215 949 PTKIICDKCSQPID-INE-LQEHQDYHFA 975 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~-~~E-~~EH~DyHfA 975 (1041)
+..|.|+.|++.|. ... |..|+-.|-.
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~~H~~~h~~ 50 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQK 50 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHHHHHHHHHH
T ss_pred CCCcCCCCCCCChhhhHHHHHHHHHHHcC
Confidence 34688999999998 755 9999988875
No 223
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=28.15 E-value=34 Score=34.38 Aligned_cols=41 Identities=10% Similarity=0.185 Sum_probs=30.6
Q ss_pred CccccccCCHHHHHHHHHhCCCc---cchhhhhCCHHHHHHHhh
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCS---TMLELEKFSLKQLQSHFE 286 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~---TIGDLa~Lp~~~L~krFG 286 (1041)
.|+.|.|||..++..++..+||. .++||-.-....|...+.
T Consensus 31 aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~ 74 (155)
T 2xzm_M 31 ALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIA 74 (155)
T ss_dssp HHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHH
T ss_pred eeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHh
Confidence 46889999999999999999996 456665544455555554
No 224
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=28.11 E-value=31 Score=33.54 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=27.5
Q ss_pred CccccccCCHHHHHHHHHhCCCcc---chhhhhCCHHHHHHH
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCST---MLELEKFSLKQLQSH 284 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~T---IGDLa~Lp~~~L~kr 284 (1041)
.|+.|.|||..++..++..+||.- ++||-.-....|...
T Consensus 18 aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~ 59 (126)
T 2vqe_M 18 ALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREY 59 (126)
T ss_dssp HHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHH
T ss_pred ehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHH
Confidence 357899999999999999999963 555544333333333
No 225
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.06 E-value=9.8 Score=32.63 Aligned_cols=22 Identities=18% Similarity=0.640 Sum_probs=11.9
Q ss_pred ccccccCCCCCcccccccchhh
Q psy16215 952 IICDKCSQPIDINELQEHQDYH 973 (1041)
Q Consensus 952 ~~C~rC~~~v~~~E~~EH~DyH 973 (1041)
+.|+.|++.|...+|+.|++-|
T Consensus 44 ~~C~~C~~~~~~~~l~~H~~~c 65 (75)
T 2d9k_A 44 ELCGNCGRNVLVKDLKTHPEVC 65 (75)
T ss_dssp EECSSSCCEEETTGGGTHHHHB
T ss_pred eEcccCCCcCcHHHHHHHHHHc
Confidence 4555555555555555555544
No 226
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.34 E-value=13 Score=31.85 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=13.6
Q ss_pred cccccccCCCCCccc-ccccchhh
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
.+.|+.|++.|.... |..|+..|
T Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~~h 30 (95)
T 2yt9_A 7 GVACEICGKIFRDVYHLNRHKLSH 30 (95)
T ss_dssp CEECSSSCCEESSSHHHHHHHHHS
T ss_pred CeECCCCCCccCChHHHHHHHHhc
Confidence 456666666666544 66665555
No 227
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=26.92 E-value=13 Score=26.57 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=21.2
Q ss_pred CCccccc--ccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICD--KCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~--rC~~~v~~~E-~~EH~DyHf 974 (1041)
+.+|.|+ .||+.|.... |..|+-.|-
T Consensus 6 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~ 34 (37)
T 1va1_A 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHT 34 (37)
T ss_dssp CCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence 3468998 6999999955 999988874
No 228
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.89 E-value=36 Score=34.06 Aligned_cols=40 Identities=13% Similarity=0.249 Sum_probs=28.8
Q ss_pred CccccccCCHHHHHHHHHhCCCc---cchhhhhCCHHHHHHHh
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCS---TMLELEKFSLKQLQSHF 285 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~---TIGDLa~Lp~~~L~krF 285 (1041)
-|+.|.|||+.++..++..+||. .++||-.-....|...+
T Consensus 29 ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 71 (152)
T 3iz6_M 29 ALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVV 71 (152)
T ss_dssp HHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHH
T ss_pred hhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHH
Confidence 35789999999999999999995 56666543334444443
No 229
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.80 E-value=14 Score=27.91 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=21.2
Q ss_pred CCcccccc--cCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDK--CSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~r--C~~~v~~~E-~~EH~DyHf 974 (1041)
+-+|.|+. |++.|.... |..|+-.|-
T Consensus 7 ekp~~C~~~~C~k~F~~~~~L~~H~r~Ht 35 (38)
T 2eln_A 7 GILLKCPTDGCDYSTPDKYKLQAHLKVHT 35 (38)
T ss_dssp CCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence 45689986 999999955 999988873
No 230
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=26.15 E-value=13 Score=30.82 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCcccccccCCCCCccc-ccccchhh
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
+-+|.|+.||+.|.... |..|+.-|
T Consensus 30 ekp~~C~~C~k~F~~~~~L~~H~~~H 55 (60)
T 4gzn_C 30 YRPRSCPECGKCFRDQSEVNRHLKVH 55 (60)
T ss_dssp CCCEECTTTCCEESSHHHHHHHGGGG
T ss_pred CcCeECCCCCCCcCCHHHHHHHhCcc
Confidence 34689999999999955 99999887
No 231
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=25.96 E-value=62 Score=43.50 Aligned_cols=57 Identities=9% Similarity=0.102 Sum_probs=48.9
Q ss_pred cCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhh-hhhHHHHHHHHcCCCC
Q psy16215 244 NLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFE-EKTASWLYYIARGIDH 302 (1041)
Q Consensus 244 ~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG-~k~G~~L~~~aRGiD~ 302 (1041)
..|++.++|||....++ |...|+ ++.+|.++++.+|...++ +..|..+++.++-...
T Consensus 725 ~~~L~q~~~i~~~~~~~-l~~~~~-~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~ 782 (1724)
T 4f92_B 725 MCPLRQFRKLPEEVVKK-IEKKNF-PFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPK 782 (1724)
T ss_dssp SCGGGGSTTSCHHHHHH-HHTSSC-CGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCC
T ss_pred CCceecCCCCCHHHHHH-HHhcCC-CHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCC
Confidence 47999999999999987 788999 899999999999988776 4568899999987643
No 232
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=25.61 E-value=1.5e+02 Score=29.69 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCC---cEEEeccceEEEEc
Q psy16215 91 NAGREVIAVLSEFSN---IVERASIDEAYIDL 119 (1041)
Q Consensus 91 ~aS~kI~eIL~~fSP---~VE~aSIDEafLDL 119 (1041)
.+.++|...|....+ .|-+++-||+.+=+
T Consensus 58 ~vL~~va~~L~~~~~~~~~v~R~gGDEF~ill 89 (179)
T 3tvk_A 58 VVLRTLATYLASWTRDYETVYRYGGEEFIIIV 89 (179)
T ss_dssp HHHHHHHHHHHHTSCTTSCEEECSSSEEEEEE
T ss_pred HHHHHHHHHhHhcCCcccEEEEccCCEEEEEc
Confidence 455666677776653 68889999976633
No 233
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.19 E-value=12 Score=30.82 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=21.2
Q ss_pred CcccccccCCCCCccc-ccccchhhH
Q psy16215 950 TKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 950 d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
..|.|+.|++.|.... |..|+..|-
T Consensus 44 ~~~~C~~C~k~f~~~~~L~~H~~~H~ 69 (74)
T 2lce_A 44 KPYRCNICGAQFNRPANLKTHTRIHS 69 (74)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHHC
T ss_pred CCEECCCCCchhCCHHHHHHHHHhcC
Confidence 3589999999999955 999998884
No 234
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=24.63 E-value=12 Score=28.69 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=21.5
Q ss_pred CCcccccccCCCCCccc-ccccch-hhHH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQD-YHFA 975 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~D-yHfA 975 (1041)
+-.|.|+.||+.|.... |..|+- .|-.
T Consensus 5 ~kp~~C~~C~k~F~~~~~L~~H~~~~H~~ 33 (48)
T 3iuf_A 5 DKPYACDICGKRYKNRPGLSYHYAHSHLA 33 (48)
T ss_dssp TSCEECTTTCCEESSHHHHHHHHHHSSCC
T ss_pred CcCEECCCcCcccCCHHHHHHHhhhhcCC
Confidence 34689999999999855 888888 7754
No 235
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.28 E-value=14 Score=30.48 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.2
Q ss_pred CcccccccCCCCCccc-ccccchhhH
Q psy16215 950 TKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 950 d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
..|.|+.|++.|.... |..|+..|-
T Consensus 41 ~~~~C~~C~~~f~~~~~L~~H~~~H~ 66 (72)
T 1x6e_A 41 KPYKCLECGKAFSQNSGLINHQRIHT 66 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred CCeECCCCCcccCCHHHHHHHHHhcC
Confidence 3589999999999955 999998884
No 236
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=24.10 E-value=14 Score=31.21 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=19.8
Q ss_pred cccccccCCCCCccc-ccccchhhH
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
.+.|+.|+..|.... |..|+..|+
T Consensus 65 ~~~C~~C~~~f~~~~~l~~H~~~H~ 89 (89)
T 2wbs_A 65 PFQCQKCDRAFSRSDHLALHMKRHF 89 (89)
T ss_dssp CEECSSSSCEESSHHHHHHHGGGGC
T ss_pred CccCCCCCcccCCHHHHHHHHHhhC
Confidence 488999999998854 999988874
No 237
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.69 E-value=36 Score=33.96 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=30.0
Q ss_pred CccccccCCHHHHHHHHHhCCCc---cchhhhhCCHHHHHHHhh
Q psy16215 246 SIKKVRHLGGKLGDEVVETLQCS---TMLELEKFSLKQLQSHFE 286 (1041)
Q Consensus 246 PI~kIpGIG~K~a~rLL~~LGI~---TIGDLa~Lp~~~L~krFG 286 (1041)
-|+.|.|||+.++..++..+||. .++||-.-....|...+.
T Consensus 24 aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~ 67 (148)
T 3j20_O 24 ALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILA 67 (148)
T ss_dssp HHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHH
T ss_pred hhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHh
Confidence 35789999999999999999996 466665544445555554
No 238
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=23.36 E-value=38 Score=38.09 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=33.5
Q ss_pred ccccccCCHHHHHHHHHhC--C-Cccchhhhh--CC--HHHHHHHhh--hhhHHHHHHHHcCCC
Q psy16215 247 IKKVRHLGGKLGDEVVETL--Q-CSTMLELEK--FS--LKQLQSHFE--EKTASWLYYIARGID 301 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~L--G-I~TIGDLa~--Lp--~~~L~krFG--~k~G~~L~~~aRGiD 301 (1041)
+..|||||+++++++.+-+ | +..+.+|.. .+ ...|.+.+| ++++..+|+. |+.
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~--Gi~ 124 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE--GLR 124 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT--TCC
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc--CCC
Confidence 7899999999998753322 2 334445543 11 134555554 7888888876 874
No 239
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=23.32 E-value=45 Score=37.05 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=31.9
Q ss_pred ccccccCCHHHHHHHHHhC--C-CccchhhhhC-CH-HHHHHHh--hhhhHHHHHHHHcCCC
Q psy16215 247 IKKVRHLGGKLGDEVVETL--Q-CSTMLELEKF-SL-KQLQSHF--EEKTASWLYYIARGID 301 (1041)
Q Consensus 247 I~kIpGIG~K~a~rLL~~L--G-I~TIGDLa~L-p~-~~L~krF--G~k~G~~L~~~aRGiD 301 (1041)
+..|||||+++++++.+-+ | +..+.+|..- |. ..|.+.+ |++++..+|+. |+.
T Consensus 59 l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~~~--Gi~ 118 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQ--GFR 118 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHHHT--TCC
T ss_pred HhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHHHc--CCC
Confidence 6789999999998753322 2 4445555321 11 1122443 57888888875 875
No 240
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=23.28 E-value=20 Score=30.93 Aligned_cols=25 Identities=20% Similarity=0.487 Sum_probs=0.0
Q ss_pred CCcccccccCCCCCccc-ccccchhh
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
+..|.|+.|+..|.... |..|+..|
T Consensus 73 ~~~~~C~~C~~~f~~~~~l~~H~~~H 98 (100)
T 2ebt_A 73 AKPFQCGVCNRSFSRSDHLALHMKRH 98 (100)
T ss_dssp CCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred CCCeECCCCcCccCCHHHHHHHHHHh
No 241
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=22.50 E-value=28 Score=28.33 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=22.1
Q ss_pred CCCCcccccc--cCCCCCccc-ccccchhhH
Q psy16215 947 ADPTKIICDK--CSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 947 ~~~d~~~C~r--C~~~v~~~E-~~EH~DyHf 974 (1041)
.....+.|+- |++.|.... |..|+..|.
T Consensus 13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~ 43 (72)
T 2epa_A 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHT 43 (72)
T ss_dssp CCCCCEECSSTTTCCEESSHHHHHHHHHHHS
T ss_pred cccCceeCCCCCCccccCCHHHHHHHHHhcC
Confidence 3445688988 999999865 999988884
No 242
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.48 E-value=15 Score=29.60 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=21.2
Q ss_pred CCcccccccCCCCCccc-ccccchhhH
Q psy16215 949 PTKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 949 ~d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+..+.|+.|+..|.... |..|+..|-
T Consensus 37 ~~~~~C~~C~~~f~~~~~l~~H~~~H~ 63 (73)
T 2ctu_A 37 RKTPMCEKCRKDSCQEAALNKDEGNES 63 (73)
T ss_dssp SSSCCCHHHHHTCSCCCSSCCCSSCCC
T ss_pred CCCCCCCCCChhhcCHHHHHHHHHhhc
Confidence 34589999999999855 999998773
No 243
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.12 E-value=32 Score=30.33 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=22.8
Q ss_pred CcccccccCCCCCccc-ccccchhhHHhh
Q psy16215 950 TKIICDKCSQPIDINE-LQEHQDYHFALE 977 (1041)
Q Consensus 950 d~~~C~rC~~~v~~~E-~~EH~DyHfAkd 977 (1041)
..|.|+.|+..|.... |..|+..|-...
T Consensus 64 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~ 92 (110)
T 2csh_A 64 KPYECNICAKRFMWRDSFHRHVTSCTKSY 92 (110)
T ss_dssp CCEECSSSCCEESCHHHHHHHHHHHHHHH
T ss_pred CCeeCCCCcchhcCHHHHHHHHHHccccc
Confidence 3589999999999855 999999886543
No 244
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=21.93 E-value=56 Score=39.80 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=9.6
Q ss_pred eccceEEEEcchhHH
Q psy16215 110 ASIDEAYIDLTDVVH 124 (1041)
Q Consensus 110 aSIDEafLDLT~~v~ 124 (1041)
+-||.+.+-+.+...
T Consensus 282 y~iDGvViKv~~~~~ 296 (671)
T 2owo_A 282 FDIDGVVIKVNSLAQ 296 (671)
T ss_dssp SCEEEEEEEESBHHH
T ss_pred CCCccEEEEecCHHH
Confidence 566777777666543
No 245
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=21.74 E-value=16 Score=31.20 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=16.5
Q ss_pred cccccccCCCCCccc-ccccchhhH
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
+|.|+.|++.|.... |..|+..|.
T Consensus 3 ~~~C~~C~k~f~~~~~L~~H~~~H~ 27 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLTTHIRTHT 27 (88)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHH
T ss_pred CCcCCCCCCccCCHHHHHHHHHHcC
Confidence 466777777777744 777777664
No 246
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.60 E-value=26 Score=31.32 Aligned_cols=25 Identities=20% Similarity=0.386 Sum_probs=18.2
Q ss_pred CcccccccCCCCCccc-ccccchhhH
Q psy16215 950 TKIICDKCSQPIDINE-LQEHQDYHF 974 (1041)
Q Consensus 950 d~~~C~rC~~~v~~~E-~~EH~DyHf 974 (1041)
..|.|+.|++.|.... |..|+..|-
T Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~ 31 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYLKVHNRKHT 31 (124)
T ss_dssp SSCCCTTTCCCCSSHHHHHHHHHHHS
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHhCC
Confidence 3577888888887754 888877774
No 247
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=21.00 E-value=16 Score=29.95 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=14.7
Q ss_pred cccccccCCCCCccc-ccccchhh
Q psy16215 951 KIICDKCSQPIDINE-LQEHQDYH 973 (1041)
Q Consensus 951 ~~~C~rC~~~v~~~E-~~EH~DyH 973 (1041)
.|.|+.||+.|.... |..|+..|
T Consensus 49 ~~~C~~C~~~f~~~~~l~~H~~~H 72 (73)
T 1f2i_G 49 PFQCRICMRNFSRSDHLTTHIRTH 72 (73)
T ss_dssp CEECTTTCCEESCHHHHHHHHTTC
T ss_pred CeECCCCCchhCCHHHHHHHHHhc
Confidence 366777777776633 66666554
No 248
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.41 E-value=18 Score=29.43 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=21.6
Q ss_pred CcccccccCCCCCccc-ccccchhhHH
Q psy16215 950 TKIICDKCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 950 d~~~C~rC~~~v~~~E-~~EH~DyHfA 975 (1041)
..|.|+.|++.|.... |..|+..|-.
T Consensus 36 ~~~~C~~C~~~f~~~~~L~~H~~~h~~ 62 (70)
T 1x5w_A 36 RPFKCNYCSFDTKQPSNLSKHMKKFHG 62 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHHhC
Confidence 3589999999999955 9999988753
No 249
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.19 E-value=21 Score=31.94 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.2
Q ss_pred CcccccccCCCC-Cccc-ccccchhh
Q psy16215 950 TKIICDKCSQPI-DINE-LQEHQDYH 973 (1041)
Q Consensus 950 d~~~C~rC~~~v-~~~E-~~EH~DyH 973 (1041)
..|.|+.|++.| .... |..|+-.|
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~~H~~~h 58 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLKKHMENC 58 (96)
T ss_dssp SCEECTTTCSCEESSHHHHHHHHHHH
T ss_pred CCcCCCCCCCCcccCHHHHHHHHHHH
Confidence 348899999999 7754 99999888
No 250
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=20.07 E-value=24 Score=30.89 Aligned_cols=26 Identities=19% Similarity=0.485 Sum_probs=21.7
Q ss_pred CcccccccCCCCCccc-ccccchhhHH
Q psy16215 950 TKIICDKCSQPIDINE-LQEHQDYHFA 975 (1041)
Q Consensus 950 d~~~C~rC~~~v~~~E-~~EH~DyHfA 975 (1041)
..|.|+.|+..|.... |..|+..|-.
T Consensus 72 ~~~~C~~C~~~f~~~~~L~~H~~~H~~ 98 (106)
T 2ee8_A 72 KPFKCQECGKGFCQSRTLAVHKTLHMQ 98 (106)
T ss_dssp CTTSCSSSCCCCSSHHHHHHHHHHTTS
T ss_pred CCeECCCcCCcccCHHHHHHHHHHhCC
Confidence 3589999999999855 9999998853
Done!