BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16216
(129 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|380014904|ref|XP_003691455.1| PREDICTED: DNA polymerase eta-like [Apis florea]
Length = 700
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 66/131 (50%), Positives = 91/131 (69%), Gaps = 9/131 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIA--ASQLSNTFVVGF 58
YRNAGREVI ++ E N++ERAS+DEAY+D+TD+VH+RM + + + A+QLSNTFVVG+
Sbjct: 93 YRNAGREVINIIKEHCNVIERASVDEAYLDITDMVHKRMSTNLNFSDLATQLSNTFVVGY 152
Query: 59 GP-DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
NDE+ R G+ W+ V+ + E+ E Q+LAIAG+IVE+IR + K F
Sbjct: 153 SEIGKNDEEERSKGIKTWIKNVFEE-----FEDIEA-QKLAIAGLIVEKIRTDISDKIGF 206
Query: 118 HCSAGIAHNKV 128
CSAGIA NK+
Sbjct: 207 KCSAGIAQNKI 217
>gi|350412770|ref|XP_003489756.1| PREDICTED: DNA polymerase eta-like [Bombus impatiens]
Length = 818
Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats.
Identities = 71/135 (52%), Positives = 91/135 (67%), Gaps = 16/135 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK----SIGHIAASQLSNTFVV 56
YR+AGREVI V+ + NI+ERAS+DEAY+D+TD+V +RM S+ H+ +QLSNTFVV
Sbjct: 93 YRSAGREVINVIKKHCNIIERASVDEAYLDITDLVCKRMSTYSISLNHL-VTQLSNTFVV 151
Query: 57 GFGP-DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF--QELAIAGVIVEEIRAAVLS 113
G+ NDE+ R G W+ V+ EN ED Q+LAIAG+IVEEIRA +
Sbjct: 152 GYSEVGKNDEEERSKGTETWIMNVF--------ENLEDIEAQKLAIAGLIVEEIRADIFD 203
Query: 114 KTQFHCSAGIAHNKV 128
KT F CSAGIA NK+
Sbjct: 204 KTGFRCSAGIAGNKI 218
>gi|340710696|ref|XP_003393922.1| PREDICTED: DNA polymerase eta-like [Bombus terrestris]
Length = 820
Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats.
Identities = 70/135 (51%), Positives = 91/135 (67%), Gaps = 16/135 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK----SIGHIAASQLSNTFVV 56
YR+AGREVI V+ + NI+ERAS+DEAY+D+TD+V ++M S+ H+ +QLSNTFVV
Sbjct: 93 YRSAGREVINVIKKHCNIIERASVDEAYLDITDLVCKKMSTYSISLNHL-VTQLSNTFVV 151
Query: 57 GFGP-DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF--QELAIAGVIVEEIRAAVLS 113
G+ NDE+ R G W+ V+ EN ED Q+LAIAG+IVEEIRA +
Sbjct: 152 GYSEVGKNDEEERSKGTKTWIMNVF--------ENLEDIEAQKLAIAGLIVEEIRADIFD 203
Query: 114 KTQFHCSAGIAHNKV 128
KT F CSAGIA NK+
Sbjct: 204 KTGFRCSAGIAENKI 218
>gi|328786259|ref|XP_001122310.2| PREDICTED: DNA polymerase eta [Apis mellifera]
Length = 689
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 65/131 (49%), Positives = 89/131 (67%), Gaps = 9/131 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIA--ASQLSNTFVVGF 58
YR+AG EVI V+ E NI+ERAS+DEAY+D+TD+VH+RM + + + A+QLSNTFVVG+
Sbjct: 93 YRSAGCEVINVIKEHCNIIERASVDEAYLDITDMVHKRMSTNLNFSNLATQLSNTFVVGY 152
Query: 59 GP-DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
NDE+ R G W+ ++ + E+ E Q+ AIAG+IVE+IRA + K F
Sbjct: 153 SEIGKNDEEERSKGTKIWIKNIFEE-----FEDIEA-QKFAIAGLIVEKIRADIFDKIGF 206
Query: 118 HCSAGIAHNKV 128
CSAGIA NK+
Sbjct: 207 KCSAGIAQNKI 217
>gi|383850772|ref|XP_003700950.1| PREDICTED: DNA polymerase eta-like [Megachile rotundata]
Length = 774
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 64/134 (47%), Positives = 91/134 (67%), Gaps = 14/134 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKS---IGHIAASQLSNTFVVG 57
YR+AGR+V+ V+ + NI+ERAS+DEAY+D+TD+V +RM + +QLSNTF+VG
Sbjct: 93 YRSAGRDVLNVIKKHCNIIERASVDEAYLDITDIVAKRMSTSFLSQEYLVTQLSNTFIVG 152
Query: 58 FGP-DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF--QELAIAGVIVEEIRAAVLSK 114
+ NDE+ R+ GV WL T++ E ED QELA+AGVIVEE+R + ++
Sbjct: 153 YSEIGKNDEEQRRKGVNAWL--------TNIFEELEDVQAQELALAGVIVEELRQDIYNE 204
Query: 115 TQFHCSAGIAHNKV 128
T F CSAGI++NK+
Sbjct: 205 TGFKCSAGISNNKI 218
>gi|291244467|ref|XP_002742117.1| PREDICTED: DNA-directed DNA polymerase eta-like, partial
[Saccoglossus kowalevskii]
Length = 289
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 87/137 (63%), Gaps = 19/137 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAAS--QLSNTFVVGF 58
YR+A EV+ VL FS VERAS+DEAYIDLTD + ++M+ IG + S L NTFVVG+
Sbjct: 89 YRDACVEVMEVLCTFSKCVERASVDEAYIDLTDEIDKKMEEIGDVDVSIDMLPNTFVVGW 148
Query: 59 -GPDNNDE------DARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
G +NND +++ +GV +WL +S + + LAI VIVEE+R AV
Sbjct: 149 DGKENNDPNEEPPLESQTSGVFQWLNNCHSI----------EHKRLAIGAVIVEEMRKAV 198
Query: 112 LSKTQFHCSAGIAHNKV 128
KT+F CSAG++HNK+
Sbjct: 199 YQKTEFRCSAGVSHNKI 215
>gi|197245419|ref|NP_001127801.1| DNA-directed DNA polymerase eta [Nasonia vitripennis]
Length = 753
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 82/132 (62%), Gaps = 13/132 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM-KSI--GHIAASQLSNTFVVG 57
YR+AGREVI VL ++ NIVERAS+DEAY+D+T +V +++ K I + QL N+++VG
Sbjct: 92 YRSAGREVIDVLKKYCNIVERASVDEAYLDITQIVDDKLSKEIIDSDSISKQLENSYIVG 151
Query: 58 FG-PDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQ 116
F D N+E+ R G+ +WL ++ D Q LAIAG VE IR V T
Sbjct: 152 FSESDINNEEQRSKGLQDWLSELADDI---------QIQRLAIAGAFVEHIRKEVYDTTG 202
Query: 117 FHCSAGIAHNKV 128
F CSAGI+ NK+
Sbjct: 203 FRCSAGISFNKI 214
>gi|157817057|ref|NP_001101674.1| DNA polymerase eta [Rattus norvegicus]
gi|149069361|gb|EDM18802.1| polymerase (DNA directed), eta (RAD 30 related) (predicted) [Rattus
norvegicus]
Length = 689
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/136 (46%), Positives = 87/136 (63%), Gaps = 15/136 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAYIDLT+ V ER++ + ++A L +T++ G
Sbjct: 92 YREASVEVMEIMSHFA-VIERASIDEAYIDLTNAVQERLEKLQGQPVSADLLPSTYIEGL 150
Query: 59 --GPDNND----EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
GP D ED RK G+++WLG + D TS D + L + VIVEE+RAA+
Sbjct: 151 PRGPAVEDTVEKEDIRKQGLLQWLGSLEKDDPTS-----PDLR-LTVGAVIVEEMRAAIE 204
Query: 113 SKTQFHCSAGIAHNKV 128
KT F CSAGI+HNKV
Sbjct: 205 RKTGFQCSAGISHNKV 220
>gi|307200513|gb|EFN80675.1| DNA polymerase eta [Harpegnathos saltator]
Length = 827
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%), Gaps = 8/130 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI-GHIAASQLSNTFVVGFG 59
YR AG EVI V+ + N++ERAS+DEAY+D+TD+V +R+ I + S L+NTFVVG+
Sbjct: 91 YRKAGHEVIKVIRKHCNVIERASVDEAYLDITDIVEKRLDKISSNELISSLANTFVVGYS 150
Query: 60 P-DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
+DE+ R G+ W+ + + + Q+LA+AG+IVEEIRA++ ++T F
Sbjct: 151 EIGKSDEEERHKGLQTWILDSFKEL------HDIQAQKLAVAGMIVEEIRASIYNETGFR 204
Query: 119 CSAGIAHNKV 128
CSAGI+ NK+
Sbjct: 205 CSAGISQNKI 214
>gi|111308137|gb|AAI21715.1| Zgc:136881 [Danio rerio]
Length = 294
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 85/135 (62%), Gaps = 13/135 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK--SIGHIAASQLSNTFVVGF 58
YR A EVI V+S F+ ++ERASIDEAY+DLT V ER+K S+ I A QL NT + GF
Sbjct: 92 YREASVEVIEVMSRFA-VIERASIDEAYMDLTASVQERLKNTSVQDITAQQLKNTHIQGF 150
Query: 59 GPDNN----DEDA-RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 113
D DA R AG+ +WL + S T++S D + LA+ +IVE++RAAV
Sbjct: 151 PTQQENTHLDRDAQRAAGLQQWLDLLSSSTESS----PADLR-LAVGALIVEQMRAAVEE 205
Query: 114 KTQFHCSAGIAHNKV 128
T F CSAGI+HNKV
Sbjct: 206 HTGFRCSAGISHNKV 220
>gi|73973002|ref|XP_532150.2| PREDICTED: DNA polymerase eta [Canis lupus familiaris]
Length = 712
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 62/137 (45%), Positives = 85/137 (62%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ +LS F+ ++ERASIDEAYIDLT V ER++++ I+A L T++ G
Sbjct: 92 YREASVEVMGILSRFA-VIERASIDEAYIDLTSAVQERLQNLQGQPISADLLPTTYIEGL 150
Query: 59 --GPD-----NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP + E+ RK G+ +WL + D +TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEGTDQKEETRKQGLFQWLDSLQIDNNTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|354506314|ref|XP_003515209.1| PREDICTED: DNA polymerase eta [Cricetulus griseus]
Length = 695
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 15/136 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAYIDLT V +R++ + I+A L T++ G
Sbjct: 92 YREASVEVMEIMSHFA-VIERASIDEAYIDLTSAVQDRLEKLQGQPISADLLPTTYIEGL 150
Query: 59 --GPDNND----EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
GP + E+ RK G+++WLG + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PRGPTVEETVQKEEIRKQGLLQWLGSLQIDDATS-----PDLQ-LTVGAVIVEEMRAAIE 204
Query: 113 SKTQFHCSAGIAHNKV 128
KT F CSAGI+HNKV
Sbjct: 205 RKTGFQCSAGISHNKV 220
>gi|344259088|gb|EGW15192.1| DNA polymerase eta [Cricetulus griseus]
Length = 633
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 15/136 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAYIDLT V +R++ + I+A L T++ G
Sbjct: 30 YREASVEVMEIMSHFA-VIERASIDEAYIDLTSAVQDRLEKLQGQPISADLLPTTYIEGL 88
Query: 59 --GPDNND----EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
GP + E+ RK G+++WLG + D TS D Q L + VIVEE+RAA+
Sbjct: 89 PRGPTVEETVQKEEIRKQGLLQWLGSLQIDDATS-----PDLQ-LTVGAVIVEEMRAAIE 142
Query: 113 SKTQFHCSAGIAHNKV 128
KT F CSAGI+HNKV
Sbjct: 143 RKTGFQCSAGISHNKV 158
>gi|94158209|ref|NP_001035337.1| DNA polymerase eta [Danio rerio]
gi|92098322|gb|AAI15308.1| Zgc:136881 [Danio rerio]
Length = 743
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 65/135 (48%), Positives = 84/135 (62%), Gaps = 13/135 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK--SIGHIAASQLSNTFVVGF 58
YR A EVI V+S F+ ++ERASIDEAY+DLT V ER+K S+ I A QL NT + GF
Sbjct: 92 YREASVEVIEVMSRFA-VIERASIDEAYMDLTASVQERLKNTSVQDITAQQLKNTHIQGF 150
Query: 59 GPDNN----DEDA-RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 113
D DA R AG+ +WL + S T++S + LA+ +IVE++RAAV
Sbjct: 151 PTQQENTHLDRDAQRAAGLQQWLDLLSSSTESSPAD-----LHLAVGALIVEQMRAAVEE 205
Query: 114 KTQFHCSAGIAHNKV 128
T F CSAGI+HNKV
Sbjct: 206 HTGFRCSAGISHNKV 220
>gi|260803774|ref|XP_002596764.1| hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae]
gi|229282024|gb|EEN52776.1| hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae]
Length = 354
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 81/137 (59%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR+AGREVI VL +FS VERASIDEAYIDLT+ V +R++ G + LS+T V G+
Sbjct: 90 YRDAGREVIEVLCKFSRCVERASIDEAYIDLTEEVMKRLEERGPDSVTVDMLSSTHVAGW 149
Query: 59 GPDNNDEDARK------AGVMEWLGQVYSDTDTSLMENTEDF-QELAIAGVIVEEIRAAV 111
D + + GV +WL D+ M + + + LA+ I EE+RAAV
Sbjct: 150 QTDTAGQSSESEEINLAVGVYQWL-------DSLRMRDASMYDRRLAVGAAIAEEMRAAV 202
Query: 112 LSKTQFHCSAGIAHNKV 128
+T FHCSAGI HNKV
Sbjct: 203 ERETGFHCSAGIGHNKV 219
>gi|355712653|gb|AES04421.1| polymerase , eta [Mustela putorius furo]
Length = 222
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 83/140 (59%), Gaps = 18/140 (12%)
Query: 1 YRNAGREVIAVLSEFSNI---VERASIDEAYIDLTDVVHERMKSIG--HIAASQLSNTFV 55
YR A EV+ V+S F+ I +ERASIDEAYIDLT V ER++ + I+A L T++
Sbjct: 64 YREASVEVMGVMSRFAVIDAVIERASIDEAYIDLTGAVQERLQKLQGQPISADLLPTTYI 123
Query: 56 VGF--GPD-----NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIR 108
G GP + E+ RK G+ +WL + D TS D Q L + VIVEE+R
Sbjct: 124 EGLPQGPTTAEGTDQKEETRKQGLFQWLDSLQIDNPTS-----PDLQ-LTVGAVIVEEMR 177
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AA+ +T F CSAGI+HNKV
Sbjct: 178 AAIEKETGFQCSAGISHNKV 197
>gi|444725442|gb|ELW66006.1| DNA polymerase eta [Tupaia chinensis]
Length = 681
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 85/137 (62%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAYIDLT V ER++ + I+A L T++ GF
Sbjct: 92 YREASVEVMQIMSRFA-VIERASIDEAYIDLTSAVQERLQKLQGQPISADLLPTTYIEGF 150
Query: 59 --GPDNND-----EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP + E+ RK G+ +WL + +L+ +T +L + VIVEE+RAA+
Sbjct: 151 PQGPATAEDTVEKEEMRKKGLFQWLDSL------ALVNSTSPDLQLTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERQTSFQCSAGISHNKV 221
>gi|17105328|ref|NP_109640.1| DNA polymerase eta [Mus musculus]
gi|59798431|sp|Q9JJN0.1|POLH_MOUSE RecName: Full=DNA polymerase eta; AltName: Full=RAD30 homolog A;
AltName: Full=Xeroderma pigmentosum variant type protein
homolog
gi|8918248|dbj|BAA97570.1| XPV [Mus musculus]
gi|26331290|dbj|BAC29375.1| unnamed protein product [Mus musculus]
gi|148691533|gb|EDL23480.1| polymerase (DNA directed), eta (RAD 30 related) [Mus musculus]
Length = 694
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/136 (45%), Positives = 86/136 (63%), Gaps = 15/136 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAYIDLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSYFA-VIERASIDEAYIDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNND----EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
GP + E RK G+++WL + SD TS D + L + +IVEE+RAA+
Sbjct: 151 PRGPTVEETVQKEAIRKQGLLQWLDSLQSDDPTS-----PDLR-LTVGAMIVEEMRAAIE 204
Query: 113 SKTQFHCSAGIAHNKV 128
SKT F CSAGI+HNKV
Sbjct: 205 SKTGFQCSAGISHNKV 220
>gi|148227394|ref|NP_001087074.1| DNA-directed DNA polymerase eta [Xenopus laevis]
gi|50417752|gb|AAH77989.1| Polh-prov protein [Xenopus laevis]
Length = 684
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 63/137 (45%), Positives = 87/137 (63%), Gaps = 17/137 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIG--HIAASQLSNTFVVGF 58
YR A EV+ V+S F+ +VERASIDEAYIDLTD V +R++ +G I+ L NT+V GF
Sbjct: 92 YREASVEVMEVMSRFA-VVERASIDEAYIDLTDSVQKRLREMGVAPISGELLKNTYVQGF 150
Query: 59 ---GPDNND---EDARKAGVMEWLGQV-YSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
G D + E+ R+ G+ +WL + D ++ ++ LA+ +IVEE+RAAV
Sbjct: 151 PQCGMDRDSLSKEELRRHGLEQWLESLPVGDPHSADVK-------LAVGAIIVEEMRAAV 203
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGIAHNKV
Sbjct: 204 EEETTFQCSAGIAHNKV 220
>gi|60686908|gb|AAX35543.1| DNA polymerase eta [Xenopus laevis]
Length = 684
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 63/137 (45%), Positives = 87/137 (63%), Gaps = 17/137 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIG--HIAASQLSNTFVVGF 58
YR A EV+ V+S F+ +VERASIDEAYIDLTD V +R++ +G I+ L NT+V GF
Sbjct: 92 YREASVEVMEVMSRFA-VVERASIDEAYIDLTDSVQKRLREMGVAPISGELLKNTYVQGF 150
Query: 59 ---GPDNND---EDARKAGVMEWLGQV-YSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
G D + E+ R+ G+ +WL + D ++ ++ LA+ +IVEE+RAAV
Sbjct: 151 PQCGMDRDSLSKEELRRHGLEQWLESLPVGDPHSADVK-------LAVGAIIVEEMRAAV 203
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGIAHNKV
Sbjct: 204 EEETTFQCSAGIAHNKV 220
>gi|410959244|ref|XP_003986222.1| PREDICTED: DNA polymerase eta [Felis catus]
Length = 712
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 61/137 (44%), Positives = 82/137 (59%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ V+S F+ I ER SIDEAY+DLT VHER++ + I+A L T++ G
Sbjct: 92 YREASVEVMGVMSRFAGI-ERGSIDEAYVDLTSAVHERLQKLQGQPISADLLPTTYIEGL 150
Query: 59 --GPD-----NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP + E+ RK G+ +WL + + TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEGTDQKEEMRKQGLFQWLDSLQTGNTTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|322796130|gb|EFZ18706.1| hypothetical protein SINV_03879 [Solenopsis invicta]
Length = 818
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 54/133 (40%), Positives = 88/133 (66%), Gaps = 12/133 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQ----LSNTFVV 56
YR AGREVI V+ + N++ERAS+DEAY+D+TD+V +R+ + ++ + L+NT+VV
Sbjct: 92 YRKAGREVIQVIKKHCNVIERASVDEAYLDITDIVDKRLAT-SKVSPKEVILSLANTYVV 150
Query: 57 GFGP-DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 115
G+ NDE+ R G+ W+ +++ + + + Q LA+AG++VEE+R ++ +T
Sbjct: 151 GYSEVGKNDEEERYQGLQTWILDSFNE-----LHDIQT-QRLAVAGIMVEEMRESIYRET 204
Query: 116 QFHCSAGIAHNKV 128
F CSAGIA NK+
Sbjct: 205 GFRCSAGIAQNKI 217
>gi|431838335|gb|ELK00267.1| DNA polymerase eta [Pteropus alecto]
Length = 712
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 62/139 (44%), Positives = 86/139 (61%), Gaps = 20/139 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ +LS F+ ++ERASIDEAY+DLT V ER++ + I+A L T++ G
Sbjct: 92 YREASVEVMEILSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPTTYIEGL 150
Query: 59 --GPDNNDE-----DARKAGVMEWLGQVYSDTDTSLMENTE--DFQELAIAGVIVEEIRA 109
GP +E + RK G+++WL D+ +ENT D Q L + VIVEE+RA
Sbjct: 151 PQGPTTAEETVQKEEMRKRGLLQWL-------DSLQIENTNSPDLQ-LTVGAVIVEEMRA 202
Query: 110 AVLSKTQFHCSAGIAHNKV 128
A+ +T F CSAGI+HNKV
Sbjct: 203 AIERQTGFQCSAGISHNKV 221
>gi|440902446|gb|ELR53238.1| DNA polymerase eta [Bos grunniens mutus]
Length = 710
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 87/137 (63%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR+A EV+ V+S F+ ++ER SIDEAY+DLT V ER++ + + I+A L T + GF
Sbjct: 92 YRDASMEVMEVMSRFA-VMERGSIDEAYLDLTSAVQERLQKLQNQPISADLLPTTCIEGF 150
Query: 59 --GPDNND-----EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP + E+ RK G+++WL + +++ +S D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTTEGTVEKEERRKQGLLQWLDSLQTESTSS-----PDLQ-LTMGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERQTGFQCSAGISHNKV 221
>gi|403261356|ref|XP_003923089.1| PREDICTED: DNA polymerase eta isoform 3 [Saimiri boliviensis
boliviensis]
Length = 648
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 84/137 (61%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 30 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 88
Query: 59 --GPDNNDED-----ARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + +D TS D Q L + VIVEE+RAA+
Sbjct: 89 PQGPTTAEETIQKEGMRKQGLFQWLDSLQTDNLTS-----PDLQ-LTVGAVIVEEMRAAI 142
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 143 ERETGFQCSAGISHNKV 159
>gi|403261352|ref|XP_003923087.1| PREDICTED: DNA polymerase eta isoform 1 [Saimiri boliviensis
boliviensis]
Length = 710
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 84/137 (61%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDED-----ARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + +D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETIQKEGMRKQGLFQWLDSLQTDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|327262355|ref|XP_003215990.1| PREDICTED: DNA polymerase eta-like [Anolis carolinensis]
Length = 689
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 61/138 (44%), Positives = 85/138 (61%), Gaps = 18/138 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIAASQLSNTFVVGF 58
YR A EV+ V+S F+ ++ERASIDEAY+DLT VHER++ + I A QL+ T++ GF
Sbjct: 92 YREASVEVMEVMSRFA-VIERASIDEAYMDLTSAVHERLQKMRGQPIVAEQLATTYIQGF 150
Query: 59 -------GPDNNDEDARKAGVMEWLGQV-YSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
G +N E+ R G+ +WL + + D + N E +L + VI+EE+RAA
Sbjct: 151 PDSFALEGTTDNKEEWRLHGLRQWLESLPFED-----LSNPE--LQLTVGAVIMEEMRAA 203
Query: 111 VLSKTQFHCSAGIAHNKV 128
V S T F CS GI+HNKV
Sbjct: 204 VESATGFRCSVGISHNKV 221
>gi|402867082|ref|XP_003897697.1| PREDICTED: DNA polymerase eta isoform 1 [Papio anubis]
Length = 712
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 61/137 (44%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAYIDLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYIDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|242016043|ref|XP_002428648.1| DNA polymerase IV, putative [Pediculus humanus corporis]
gi|212513311|gb|EEB15910.1| DNA polymerase IV, putative [Pediculus humanus corporis]
Length = 292
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 81/130 (62%), Gaps = 7/130 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM-KSIGHIAASQLSNTFVVGFG 59
YR A EV AV SEF V+RASIDEAY+DL+ V + + + +I L +T+++G
Sbjct: 94 YREASDEVAAVFSEFCECVQRASIDEAYLDLSKAVDDYIAEHKENIDVRDLPSTYILGHC 153
Query: 60 P-DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
N DE+ R G+ EW+ T+ M D++ LAI G+I+E++R+ +L KT FH
Sbjct: 154 DLKNKDEEKRLEGLAEWI----RITENEKMVENADYK-LAIGGIIMEKMRSKILEKTSFH 208
Query: 119 CSAGIAHNKV 128
CSAGIAHNK+
Sbjct: 209 CSAGIAHNKI 218
>gi|395534246|ref|XP_003769157.1| PREDICTED: DNA polymerase eta [Sarcophilus harrisii]
Length = 704
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 18/138 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ V+S F+ ++ER+SIDEAY+DLT+ V ER++ + + A+ L++T++ GF
Sbjct: 92 YREASVEVMKVMSRFA-VIERSSIDEAYVDLTNAVQERLQKLQAQPVTANSLASTYIQGF 150
Query: 59 --------GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
G DE RK GV++WL + D S D Q L + VIVEE+RAA
Sbjct: 151 PHGTRALEGSIQKDE-IRKQGVIQWLESLPFDDSGS-----PDLQ-LTVGAVIVEEMRAA 203
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ +T F CSAGI+HNKV
Sbjct: 204 IERQTGFQCSAGISHNKV 221
>gi|198430107|ref|XP_002128588.1| PREDICTED: similar to polymerase (DNA directed), eta [Ciona
intestinalis]
Length = 785
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 12/131 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIA-ASQLSNTFVVGFG 59
YR+AG EVI VL +F +VERAS+DEAYIDLT VV MK + Q+ NT+VVG+
Sbjct: 100 YRDAGAEVIQVLLQFGGVVERASVDEAYIDLTSVVDASMKEKRILPDLEQMGNTYVVGYP 159
Query: 60 PDNNDE--DARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
D+ D+ +AR++G+ + SD D + L +A IVE++R A+ +T F
Sbjct: 160 KDSCDDTTNARESGLSAYRDSANSDPDA---------ERLLVAAAIVEKMRLAIYQQTSF 210
Query: 118 HCSAGIAHNKV 128
CSAGI+HNK+
Sbjct: 211 RCSAGISHNKM 221
>gi|301626020|ref|XP_002942198.1| PREDICTED: DNA polymerase eta-like [Xenopus (Silurana) tropicalis]
Length = 300
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 83/136 (61%), Gaps = 15/136 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIG--HIAASQLSNTFVVGF 58
YR A EV+ V+S F+ +VERASIDEAYIDLTD V +R++ +G I L T+V G+
Sbjct: 30 YREASVEVMEVMSRFA-VVERASIDEAYIDLTDSVQKRLREMGVAPIPGELLKTTYVQGY 88
Query: 59 G---PDNN---DEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
PD + E+ R+ G+ +WL + S D + LA+ +IVEE+RAAV
Sbjct: 89 PQCEPDCDTLSKEELRQRGLEQWLESLPIGDPRS-----PDLK-LAVGAIIVEEMRAAVE 142
Query: 113 SKTQFHCSAGIAHNKV 128
+T F CSAGIAHNKV
Sbjct: 143 KETTFQCSAGIAHNKV 158
>gi|77735847|ref|NP_001029622.1| DNA polymerase eta [Bos taurus]
gi|73587313|gb|AAI03397.1| Polymerase (DNA directed), eta [Bos taurus]
gi|296474420|tpg|DAA16535.1| TPA: DNA-directed DNA polymerase eta [Bos taurus]
Length = 711
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 58/137 (42%), Positives = 86/137 (62%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR+A EV+ V+S F+ ++ER SIDEAY+DLT V ER++ + + I+A L T + GF
Sbjct: 92 YRDASMEVMEVMSRFA-VMERGSIDEAYLDLTSAVQERLQKLQNQPISADLLPTTCIEGF 150
Query: 59 --GPDNND-----EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP + E+ RK G+++WL + +++ +S D Q L + VIVEE+R A+
Sbjct: 151 PQGPTTTEGTVEKEERRKQGLLQWLDSLQTESTSS-----PDLQ-LTMGAVIVEEMRVAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 EKQTGFQCSAGISHNKV 221
>gi|55626670|ref|XP_518497.1| PREDICTED: DNA polymerase eta isoform 4 [Pan troglodytes]
gi|410211556|gb|JAA02997.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410262340|gb|JAA19136.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410302290|gb|JAA29745.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330903|gb|JAA34398.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330905|gb|JAA34399.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330907|gb|JAA34400.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330909|gb|JAA34401.1| polymerase (DNA directed), eta [Pan troglodytes]
Length = 713
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|5729982|ref|NP_006493.1| DNA polymerase eta [Homo sapiens]
gi|59798441|sp|Q9Y253.1|POLH_HUMAN RecName: Full=DNA polymerase eta; AltName: Full=RAD30 homolog A;
AltName: Full=Xeroderma pigmentosum variant type protein
gi|5457144|gb|AAD43810.1|AF158185_1 xeroderma pigmentosum variant RAD30 [Homo sapiens]
gi|5138988|dbj|BAA81666.1| DNA polymerase eta [Homo sapiens]
gi|11463971|dbj|BAB18601.1| DNA polymerase eta [Homo sapiens]
gi|34732732|gb|AAQ81300.1| polymerase (DNA directed), eta [Homo sapiens]
gi|119624615|gb|EAX04210.1| polymerase (DNA directed), eta, isoform CRA_b [Homo sapiens]
gi|119624616|gb|EAX04211.1| polymerase (DNA directed), eta, isoform CRA_b [Homo sapiens]
Length = 713
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|397526775|ref|XP_003833292.1| PREDICTED: DNA polymerase eta [Pan paniscus]
Length = 651
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 30 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 88
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 89 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 142
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 143 ERETGFQCSAGISHNKV 159
>gi|194377454|dbj|BAG57675.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 30 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 88
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 89 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 142
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 143 ERETGFQCSAGISHNKV 159
>gi|193783756|dbj|BAG53738.1| unnamed protein product [Homo sapiens]
Length = 617
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 8 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 66
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 67 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 120
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 121 ERETGFQCSAGISHNKV 137
>gi|193785802|dbj|BAG51237.1| unnamed protein product [Homo sapiens]
Length = 701
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|296198265|ref|XP_002746624.1| PREDICTED: DNA polymerase eta [Callithrix jacchus]
Length = 709
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADWLPSTYIEGL 150
Query: 59 --GPDNNDED-----ARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETIQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|443700616|gb|ELT99496.1| hypothetical protein CAPTEDRAFT_172544 [Capitella teleta]
Length = 620
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/134 (47%), Positives = 82/134 (61%), Gaps = 11/134 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER---MKSIGHIAASQLSNTFVVG 57
YR AG EVI VL+ FS VERASIDEAY+DLTD VH+R M+ I+ L NT+V+G
Sbjct: 88 YREAGAEVIEVLTGFSKCVERASIDEAYVDLTDEVHKRLAGMEENQEISPDWLPNTYVLG 147
Query: 58 FGPDNNDEDA---RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSK 114
+ D R+ G++ WL S +D + E ++LA+ VIVEE+RA V +
Sbjct: 148 CEEEEKCTDKSVQRERGLITWL---RSQSDAHTVNEHE--KQLAVGAVIVEEMRARVHTV 202
Query: 115 TQFHCSAGIAHNKV 128
T F CSAGIA NK+
Sbjct: 203 TGFRCSAGIASNKM 216
>gi|383419309|gb|AFH32868.1| DNA polymerase eta [Macaca mulatta]
Length = 712
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSSVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|380813878|gb|AFE78813.1| DNA polymerase eta [Macaca mulatta]
Length = 712
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSSVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|355748582|gb|EHH53065.1| hypothetical protein EGM_13625 [Macaca fascicularis]
Length = 690
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSSVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|355561734|gb|EHH18366.1| hypothetical protein EGK_14943 [Macaca mulatta]
Length = 690
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSSVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|348576228|ref|XP_003473889.1| PREDICTED: DNA polymerase eta-like [Cavia porcellus]
Length = 712
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/138 (44%), Positives = 81/138 (58%), Gaps = 17/138 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ V+S F+ ++ERASIDEAYIDLT V ER++ + I+A L T+V G
Sbjct: 92 YREASVEVMGVMSHFA-VIERASIDEAYIDLTSAVQERLQKLQGQPISADLLPTTYVEGL 150
Query: 59 --GP------DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
GP E+ RK G+ EWL + D S D Q L + +IVEE+RAA
Sbjct: 151 PQGPRPAAEETGQKEEMRKRGLYEWLDSLQIDNLAS-----PDLQ-LTVGALIVEEMRAA 204
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ +T F CSAGI+HNKV
Sbjct: 205 IERQTGFQCSAGISHNKV 222
>gi|299856826|pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And
Incoming Nucleotide (Nrm)
gi|299856829|pdb|3MR3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
3't Of A Cpd In The Active Site (Tt1)
gi|299856832|pdb|3MR5|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
1bp Upstream Of The Active Site (Tt3)
gi|342351155|pdb|3SI8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
5't Of A Cpd In The Active Site (Tt2)
gi|386783389|pdb|4DL2|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Cg
Template (Gg0a)
gi|386783392|pdb|4DL3|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Gg
Template (Gg0b).
gi|386783395|pdb|4DL4|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
3'g Of Cisplatin Crosslinked Gs (Pt-Gg1).
gi|386783398|pdb|4DL5|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
5'g Of Cisplatin Crosslinked Gs (Pt-Gg2).
gi|386783401|pdb|4DL6|A Chain A, Human Dna Polymerase Eta Extending Primer Immediately
After Cisplatin Crosslink (Pt-Gg3).
gi|386783404|pdb|4DL7|A Chain A, Human Dna Polymerase Eta Fails To Extend Primer 2
Nucleotide After Cisplatin Crosslink (Pt-Gg4).
gi|394986303|pdb|4ECQ|A Chain A, Human Dna Polymerase Eta- Dna Ternary Complex: At Crystal
At Ph6.8(K+ Mes) With 1 Ca2+ Ion
gi|394986306|pdb|4ECR|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 40 Sec
gi|394986309|pdb|4ECS|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 80 Sec
gi|394986312|pdb|4ECT|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 140 Sec
gi|394986315|pdb|4ECU|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 200 Sec
gi|394986318|pdb|4ECV|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 230 Sec
gi|394986321|pdb|4ECW|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 250 Sec
gi|394986324|pdb|4ECX|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 300 Sec
gi|394986327|pdb|4ECY|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.0 (Na+ Mes) With 1 Ca2+ Ion
gi|394986330|pdb|4ECZ|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.5 (Na+ Mes) With 1 Ca2+ Ion
gi|394986333|pdb|4ED0|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.8 (Na+ Mes) With 1 Ca2+ Ion
gi|394986336|pdb|4ED1|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.0 (Na+ Mes) With 1 Ca2+ Ion
gi|394986339|pdb|4ED2|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.2 (Na+ Hepes) With 1 Ca2+ Ion
gi|394986342|pdb|4ED3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.5 (Na+ Hepes) With 1 Ca2+ Ion
gi|394986345|pdb|4ED6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 6.7 For 15 Hr, Sideway
Translocation
gi|394986348|pdb|4ED7|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Tg Crystal
At Ph 7.0 (K+ Mes) With 1 Ca2+ Ion
gi|394986351|pdb|4ED8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The Tg Crystal At Ph 7.0, Normal Translocation
Length = 435
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 95 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 153
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 154 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 207
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 208 ERETGFQCSAGISHNKV 224
>gi|301757340|ref|XP_002914510.1| PREDICTED: DNA polymerase eta-like [Ailuropoda melanoleuca]
gi|281345709|gb|EFB21293.1| hypothetical protein PANDA_002412 [Ailuropoda melanoleuca]
Length = 712
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/138 (44%), Positives = 81/138 (58%), Gaps = 18/138 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ V+S F+ I ERASIDEA+IDLT V ER++ + I+A L T++ G
Sbjct: 92 YREASVEVMGVMSRFAGI-ERASIDEAFIDLTGAVQERLQKLQGQPISADLLPTTYIEGL 150
Query: 59 --------GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
G D +E RK G+ +WL + D TS D Q L + VIVEE+RAA
Sbjct: 151 PQGRTTAEGTDQKEE-TRKQGLFQWLESLRIDNTTS-----PDLQ-LTVGAVIVEEMRAA 203
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ +T F CSAGI+HNKV
Sbjct: 204 IEKETGFQCSAGISHNKV 221
>gi|299856835|pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
2bp Upstream Of The Active Site (Tt4)
gi|374977693|pdb|3TQ1|A Chain A, Human Dna Polymerase Eta In Binary Complex With Dna
gi|386783428|pdb|4EEY|A Chain A, Crystal Structure Of Human Dna Polymerase Eta In Ternary
Complex With A Cisplatin Dna Adduct
Length = 435
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 95 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 153
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 154 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 207
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 208 ERETGFQCSAGISHNKV 224
>gi|332234353|ref|XP_003266375.1| PREDICTED: DNA polymerase eta [Nomascus leucogenys]
Length = 723
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNK+
Sbjct: 205 ERETGFQCSAGISHNKI 221
>gi|403261354|ref|XP_003923088.1| PREDICTED: DNA polymerase eta isoform 2 [Saimiri boliviensis
boliviensis]
Length = 414
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 84/137 (61%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDED-----ARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + +D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETIQKEGMRKQGLFQWLDSLQTDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|402867084|ref|XP_003897698.1| PREDICTED: DNA polymerase eta isoform 2 [Papio anubis]
Length = 414
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 61/137 (44%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAYIDLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYIDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQLDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|426353300|ref|XP_004044135.1| PREDICTED: DNA polymerase eta [Gorilla gorilla gorilla]
Length = 415
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|16041729|gb|AAH15742.1| POLH protein [Homo sapiens]
gi|119624614|gb|EAX04209.1| polymerase (DNA directed), eta, isoform CRA_a [Homo sapiens]
Length = 414
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>gi|395832422|ref|XP_003789270.1| PREDICTED: DNA polymerase eta [Otolemur garnettii]
Length = 414
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 60/138 (43%), Positives = 82/138 (59%), Gaps = 18/138 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ V+S F+ ++ERASIDEAY+DLT V ER++ + I+A L T++ G
Sbjct: 92 YREASVEVMEVMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPTTYIEGL 150
Query: 59 GPDN--------NDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
P N E R G+++WL + SD TS D Q L + +IVEE+RAA
Sbjct: 151 -PRNPATAEEAVQKEKMRNQGLLQWLHSLQSDDSTS-----PDLQ-LTVGAMIVEEMRAA 203
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ +T F CSAGI+HNKV
Sbjct: 204 IEKQTGFQCSAGISHNKV 221
>gi|194223548|ref|XP_001497587.2| PREDICTED: DNA polymerase eta [Equus caballus]
Length = 713
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 59/138 (42%), Positives = 83/138 (60%), Gaps = 18/138 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ V+S F+ ++ERASIDEA++DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEVMSRFA-MIERASIDEAFVDLTSAVRERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --------GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
G D +E RK G+ +WL + +D TS D Q L + VIVEE+RAA
Sbjct: 151 PQGSTTAEGTDEKEE-MRKQGLFQWLDSLQTDNTTS-----PDLQ-LTVGAVIVEEMRAA 203
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ +T CSAGI+HNKV
Sbjct: 204 IERQTGLQCSAGISHNKV 221
>gi|221045690|dbj|BAH14522.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S + ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 30 YREASVEVMEIMSRLA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 88
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 89 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 142
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 143 ERETGFQCSAGISHNKV 159
>gi|351707957|gb|EHB10876.1| DNA polymerase eta [Heterocephalus glaber]
Length = 711
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 60/138 (43%), Positives = 81/138 (58%), Gaps = 18/138 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ V+S F+ ++ERASIDEAY+DLT V ER++ + I+A L T+V G
Sbjct: 92 YREASVEVMGVMSHFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPTTYVEGL 150
Query: 59 GPDN--------NDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
P + E+ RK G+ +WL + D S D Q L + VIVEE+RAA
Sbjct: 151 -PQSPTPAKETVQKEEMRKQGLHQWLDSLQIDNTIS-----PDLQ-LTVGAVIVEEMRAA 203
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ +T F CSAGI+HNKV
Sbjct: 204 IERQTGFQCSAGISHNKV 221
>gi|426250341|ref|XP_004018895.1| PREDICTED: DNA polymerase eta [Ovis aries]
Length = 708
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 56/136 (41%), Positives = 84/136 (61%), Gaps = 15/136 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ER SIDEAY+DLT V ER++ + + I+A L T + GF
Sbjct: 92 YREASMEVMEIMSRFA-VMERGSIDEAYLDLTSAVQERLQKLQNQRISADLLPTTCIEGF 150
Query: 59 GPDNN------DEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
+ E+ RK G+++WL + +++ +S D Q L + VIVEE+RAA+
Sbjct: 151 PQGSTTEGTVEKEERRKQGLLQWLDSLQTESTSS-----PDLQ-LTMGAVIVEEMRAAIE 204
Query: 113 SKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 RQTGFQCSAGISHNKV 220
>gi|126310086|ref|XP_001366117.1| PREDICTED: DNA polymerase eta [Monodelphis domestica]
Length = 704
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 57/138 (41%), Positives = 85/138 (61%), Gaps = 18/138 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR+A EV+ V+S F+ ++ER+SIDEAY+DLT V ER++ + + A+ L++T++ GF
Sbjct: 92 YRDASVEVMEVMSRFA-VIERSSIDEAYVDLTSAVQERLQKLQAQPVTANLLASTYIQGF 150
Query: 59 --------GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
GP +E R+ GV++WL + D +S D + L + VIVEE+R A
Sbjct: 151 PHGTRALEGPIQKEE-IRQQGVIQWLESLPVDDPSS-----SDLR-LTVGAVIVEEMRVA 203
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ T F CSAGI+HNKV
Sbjct: 204 IEKHTGFQCSAGISHNKV 221
>gi|47223238|emb|CAF98622.1| unnamed protein product [Tetraodon nigroviridis]
Length = 671
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/142 (41%), Positives = 83/142 (58%), Gaps = 18/142 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EVI V+S F+ ++ERASIDEAY+DLT V +R+K + + I A L T+V GF
Sbjct: 92 YREASVEVIEVMSRFA-VIERASIDEAYMDLTAAVQQRLKDLNNWQIQAHLLKATYVQGF 150
Query: 59 GPD------------NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEE 106
P+ ++ E+ R G+ +WL + + E + +LA+ +IVEE
Sbjct: 151 PPNPPERPAATEDVAHDREEQRARGLQQWLAML---PLPAAGEQSSAELQLAVGALIVEE 207
Query: 107 IRAAVLSKTQFHCSAGIAHNKV 128
+RAAV T F CSAGI+HNKV
Sbjct: 208 MRAAVEKDTGFRCSAGISHNKV 229
>gi|335292187|ref|XP_003356678.1| PREDICTED: DNA polymerase eta [Sus scrofa]
Length = 698
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 18/138 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ V+S F+ ++ERASIDEA++DLT V ER++ + ++A L T++ GF
Sbjct: 92 YREASAEVMEVMSRFA-MIERASIDEAFVDLTSAVRERLQKLQGQPVSADLLPTTYIEGF 150
Query: 59 GPDN--------NDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
P E+ RK G+++WL + SD +S + Q L + VIVEE+RAA
Sbjct: 151 -PQGLTTAEGTVEKEEMRKQGLLQWLDSLQSDNTSS-----PELQ-LTVGAVIVEEMRAA 203
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ +T CSAGI+HNKV
Sbjct: 204 IERQTGLQCSAGISHNKV 221
>gi|344263722|ref|XP_003403945.1| PREDICTED: DNA polymerase eta [Loxodonta africana]
Length = 718
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 18/138 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ V+S F+ I ERASIDEA+IDLT V ER++ + I+A L +T++ G
Sbjct: 95 YREASVEVMEVMSRFAGI-ERASIDEAFIDLTSAVRERLQKLQGQPISADLLPSTYIEGL 153
Query: 59 GPDN--------NDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
P E+ RK G+ +WL + D S D Q L + VIVEE+RAA
Sbjct: 154 -PQGYTTTEGTVRKEEMRKQGLFQWLDSLQIDNTAS-----PDLQ-LTMGAVIVEEVRAA 206
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ +T F CSAGI+HNKV
Sbjct: 207 IERQTGFQCSAGISHNKV 224
>gi|291396262|ref|XP_002714741.1| PREDICTED: DNA-directed DNA polymerase eta [Oryctolagus cuniculus]
Length = 687
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 58/137 (42%), Positives = 82/137 (59%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ V+S F+ I ERASIDEA++DLTD V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEVMSRFAGI-ERASIDEAFLDLTDAVEERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 GPDN-------NDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
+ E+ RK G+++WLG + + S D + L + VIVEE+RAA+
Sbjct: 151 PQGSTTAEETVQKEEMRKQGLLQWLGSLEIEGTAS-----PDVR-LTMGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
KT CSAGI+HNKV
Sbjct: 205 ERKTGLQCSAGISHNKV 221
>gi|328700741|ref|XP_001945230.2| PREDICTED: DNA polymerase eta-like [Acyrthosiphon pisum]
Length = 744
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/130 (41%), Positives = 82/130 (63%), Gaps = 10/130 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH-IAASQLSNTFVVGFG 59
YR A ++V VLS+FS+ V+RASIDEAY+DLT VV+ + S + I + L NTFV G+
Sbjct: 93 YRTASQKVFEVLSQFSSCVQRASIDEAYVDLTSVVNHHISSNHNVITENDLPNTFVEGYS 152
Query: 60 PDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF-QELAIAGVIVEEIRAAVLSKTQFH 118
DN+ + + + WL VY++ E +D+ L I ++VE++R ++ +T F
Sbjct: 153 DDNSKD--KNKNLKSWLHDVYNN------ELQDDYLLRLTIGAMMVEKLRQSIFEQTGFR 204
Query: 119 CSAGIAHNKV 128
CSAGIA+NK+
Sbjct: 205 CSAGIANNKI 214
>gi|410901122|ref|XP_003964045.1| PREDICTED: DNA polymerase eta-like [Takifugu rubripes]
Length = 707
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/136 (41%), Positives = 81/136 (59%), Gaps = 12/136 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EVI V+S F+ ++ERASIDEAY+DLT V +R+K++ I A L T++ G+
Sbjct: 92 YREASVEVIEVMSRFA-VIERASIDEAYMDLTAAVQQRLKNLNDSPIDAHLLKATYIQGY 150
Query: 59 G------PDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
P +++ R GV +WL + ++ E + +L + +IVEE+RAAV
Sbjct: 151 PQTTPERPAAAEDEQRSRGVQQWLAML---PLPAVGEQSSAELQLTVGALIVEEMRAAVE 207
Query: 113 SKTQFHCSAGIAHNKV 128
T F CSAGI+HNKV
Sbjct: 208 KHTGFQCSAGISHNKV 223
>gi|357624213|gb|EHJ75075.1| DNA polymerase eta [Danaus plexippus]
Length = 785
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 80/130 (61%), Gaps = 13/130 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIG--HIAASQLSNTFVVGF 58
YR AG++V VL F+ ++ERASIDEAY+D+TD V +R+ +I I ++ L N F +G+
Sbjct: 91 YREAGKDVAKVLQRFTPLLERASIDEAYLDITDPVRKRILNIDVRDINSNMLPNNFALGY 150
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
D D ++ V+S +S+ + E + L + +IV EIRAAV ++T +
Sbjct: 151 --DTLD---------SFISDVHSCGLSSMEFDYEHSKHLLVGALIVSEIRAAVYAETGYQ 199
Query: 119 CSAGIAHNKV 128
CSAGIAHNK+
Sbjct: 200 CSAGIAHNKI 209
>gi|321458271|gb|EFX69342.1| hypothetical protein DAPPUDRAFT_228708 [Daphnia pulex]
Length = 695
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 20/134 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM--KSIGHIAASQLSNTFVVGF 58
YR+ G+EVI V+ F +VERASIDEAYID+T V+ + + + I +L NT+ VG+
Sbjct: 93 YRDGGKEVIDVMCSFGVVVERASIDEAYIDMTVVIDKMLSDSTATAIDLEELPNTYFVGW 152
Query: 59 GPDNNDEDARKAGVMEWLGQV----YSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSK 114
G D +D GV WL + Y+D D +L ++VE++RAAV K
Sbjct: 153 GNDTDD----VKGVHGWLQALSEGNYNDND----------WKLTYGAILVEKMRAAVYEK 198
Query: 115 TQFHCSAGIAHNKV 128
T F CSAGI++NK+
Sbjct: 199 TGFRCSAGISNNKM 212
>gi|348501702|ref|XP_003438408.1| PREDICTED: DNA polymerase eta [Oreochromis niloticus]
Length = 685
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 57/142 (40%), Positives = 82/142 (57%), Gaps = 18/142 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIAASQLSNTFVVGF 58
YR A EVI V+S F+ ++ERASIDEAY+DLT V +R+K++ I S L T++ G+
Sbjct: 92 YREASVEVIEVMSRFA-VIERASIDEAYMDLTAAVQQRLKNMTDKQIEPSLLRTTYIQGY 150
Query: 59 GPDN------------NDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEE 106
+ + E+ R G+ +WL + T S+ E + +L + +IVEE
Sbjct: 151 PQSSPAAEESAEDTVLDKEEQRSRGLQQWLESL---TFPSVGEQSSAELQLTVGALIVEE 207
Query: 107 IRAAVLSKTQFHCSAGIAHNKV 128
+RAAV T F CSAGI+HNKV
Sbjct: 208 MRAAVEKHTGFRCSAGISHNKV 229
>gi|241830533|ref|XP_002414817.1| DNA polymerase eta, putative [Ixodes scapularis]
gi|215509029|gb|EEC18482.1| DNA polymerase eta, putative [Ixodes scapularis]
Length = 727
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 12/128 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR+AG EV++VL +F +V+RASIDEAY+DLT VV + + L +T VVG+ P
Sbjct: 93 YRDAGAEVLSVLCQFGAVVQRASIDEAYLDLTPVVTAQAT---FPSPDSLPSTHVVGY-P 148
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+ +R+ V EWL + + LA +VE IRAAVL +T F CS
Sbjct: 149 EERGVRSREEAVAEWLSTIVDPGGGDSL--------LARGCALVERIRAAVLEQTGFDCS 200
Query: 121 AGIAHNKV 128
AG+AHNKV
Sbjct: 201 AGVAHNKV 208
>gi|390332295|ref|XP_001183938.2| PREDICTED: DNA polymerase eta-like [Strongylocentrotus purpuratus]
Length = 774
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 77/135 (57%), Gaps = 18/135 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER---MKSIGHIA-ASQLSNTFVV 56
YR AG EVI VL ++S+ VERAS+DEAY+D+TD V R M+ G + QL TF+
Sbjct: 230 YREAGAEVITVLCKYSDSVERASVDEAYVDVTDQVQTRLAQMEDQGQVLDPEQLHQTFIA 289
Query: 57 G--FGPDNND-EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 113
G + D ED RK G+ WL +D T + L + +I EE+RAAV
Sbjct: 290 GHDVAEEGVDIEDVRKRGLETWLTS--ADLAT---------KRLGVGALIAEEMRAAVFK 338
Query: 114 KTQFHCSAGIAHNKV 128
T F CSAGI+HNK+
Sbjct: 339 DTGFRCSAGISHNKM 353
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER---MKSIGHIA-ASQLSNTFVV 56
YR AG EVI VL ++S+ VERAS+DEAY+D+TD V R M+ G + QL TF+
Sbjct: 88 YREAGAEVITVLCKYSDSVERASVDEAYVDVTDQVQTRLAQMEDQGQVLDPEQLHQTFIA 147
Query: 57 G 57
G
Sbjct: 148 G 148
>gi|432904760|ref|XP_004077403.1| PREDICTED: DNA polymerase eta-like [Oryzias latipes]
Length = 708
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/145 (38%), Positives = 84/145 (57%), Gaps = 21/145 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIG--HIAASQLSNTFVVGF 58
YR+A EVI V+S F+ ++ERASIDEAY+DLT V +R+K+ ++ L T++ G+
Sbjct: 92 YRDASVEVIEVMSRFA-VIERASIDEAYMDLTAAVQQRLKTTTEEQMSPCLLKTTYIQGY 150
Query: 59 -----GPDNND----------EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVI 103
P + D E+ R G+ +W+ + + + L N + Q L + +I
Sbjct: 151 PQSGLDPPSADASPEEMILYKEELRSKGLQQWMESLPTPSSGEL--NCAELQ-LTMGALI 207
Query: 104 VEEIRAAVLSKTQFHCSAGIAHNKV 128
VEE+RAAV +T F CSAGI+HNKV
Sbjct: 208 VEEMRAAVEKQTGFRCSAGISHNKV 232
>gi|312373689|gb|EFR21388.1| hypothetical protein AND_17125 [Anopheles darlingi]
Length = 281
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 18/138 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIG----HIAASQLSNTFVV 56
YR AG+EV VL F+ ++ERASIDEAY+D+T+ V R++ + + +L+NTF V
Sbjct: 74 YREAGKEVAEVLKSFTPLLERASIDEAYLDITERVLNRIRDMNEGRFQLLPDKLANTFAV 133
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ------ELAIAGVIVEEIRAA 110
G+ D+ + +K L + + TS E + +L + IV EIRAA
Sbjct: 134 GY--DSIGDFVKK------LSNTFDNNGTSEQGTPEQLEYKKSDIKLLVGASIVNEIRAA 185
Query: 111 VLSKTQFHCSAGIAHNKV 128
V KT + CSAG+AHNK+
Sbjct: 186 VKEKTGYECSAGVAHNKI 203
>gi|149583604|ref|XP_001516192.1| PREDICTED: DNA polymerase eta [Ornithorhynchus anatinus]
Length = 729
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 18/138 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIAASQLSNTFVVGF 58
YR A +V+ V+S F+ ++ER SIDEAY+DLT VV ER++ + + A L T+V G
Sbjct: 92 YREASVKVMEVMSRFA-VIERGSIDEAYVDLTQVVQERLQKLRGQPVPADLLPTTYVQGL 150
Query: 59 GPDN-------NDEDARKAGVMEWLGQV-YSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
+ E AR+ G+ +WL + + D+ + + L + VIVEE+RAA
Sbjct: 151 PRGSGAAQGAPQKEQARQEGLGQWLDSLPFGDSSSPDLR-------LTVGAVIVEEMRAA 203
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ T + CSAGI+HNKV
Sbjct: 204 IEKDTGYQCSAGISHNKV 221
>gi|157106621|ref|XP_001649408.1| DNA polymerase eta [Aedes aegypti]
gi|108879827|gb|EAT44052.1| AAEL004562-PA [Aedes aegypti]
Length = 852
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 18/139 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIG----HIAASQLSNTFVV 56
YR AG+EV AVL F+ ++ERAS+DEAY+D+T+ V R++ + + +L+NTF V
Sbjct: 100 YREAGKEVAAVLQTFTPLLERASVDEAYLDITERVLARLRDMNEGKFQLLPDKLANTFAV 159
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ-------ELAIAGVIVEEIRA 109
G+ D+ V + G + + +E+ ED +L I IV EIRA
Sbjct: 160 GY-------DSIGEFVQKISGDLDGRVSSQELESEEDRVAYKKSDIKLLIGASIVNEIRA 212
Query: 110 AVLSKTQFHCSAGIAHNKV 128
AV KT + CSAGIAHNK+
Sbjct: 213 AVKEKTGYECSAGIAHNKI 231
>gi|53134355|emb|CAG32324.1| hypothetical protein RCJMB04_23b13 [Gallus gallus]
Length = 693
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 61/135 (45%), Positives = 77/135 (57%), Gaps = 14/135 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ VLS F+ I ERASIDEAY+DLT ER++ + + A L TFV G
Sbjct: 92 YREASAEVMEVLSRFAAI-ERASIDEAYLDLTGSARERLRELRGRPLEAELLPTTFVQGL 150
Query: 59 GPD-----NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 113
+ + E+ R+ G+ EWL + D N D Q LA+ VIVEEIR AV
Sbjct: 151 PAEPGLQPADKEELRRRGLQEWLASLSFDN-----VNCPDLQ-LAMGAVIVEEIRVAVEK 204
Query: 114 KTQFHCSAGIAHNKV 128
T F CSAGI+HNK+
Sbjct: 205 ATGFRCSAGISHNKM 219
>gi|50838832|ref|NP_001001304.1| DNA polymerase eta [Gallus gallus]
gi|31442180|dbj|BAC77302.1| polymerase eta [Gallus gallus]
Length = 673
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 61/135 (45%), Positives = 77/135 (57%), Gaps = 14/135 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ VLS F+ I ERASIDEAY+DLT ER++ + + A L TFV G
Sbjct: 92 YREASAEVMEVLSRFAAI-ERASIDEAYLDLTGSARERLRELRGRPLEAELLPTTFVQGL 150
Query: 59 GPD-----NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 113
+ + E+ R+ G+ EWL + D N D Q LA+ VIVEEIR AV
Sbjct: 151 PAEPGLQPADKEELRRRGLQEWLASLSFDN-----VNCPDLQ-LAMGAVIVEEIRVAVEK 204
Query: 114 KTQFHCSAGIAHNKV 128
T F CSAGI+HNK+
Sbjct: 205 ATGFRCSAGISHNKM 219
>gi|449496783|ref|XP_004174688.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase eta [Taeniopygia
guttata]
Length = 699
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 61/134 (45%), Positives = 76/134 (56%), Gaps = 14/134 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIA--ASQLSNTFVVGF 58
YR A EV+ VLS F+ I ERASIDEAY+DLT R++ + A+ L +TFV G
Sbjct: 92 YREASAEVMRVLSRFAAI-ERASIDEAYLDLTGSARLRLRELRGRPLPATLLPSTFVQGL 150
Query: 59 ----GPD-NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 113
GPD E+ R+ G+ EWL + D + D Q L + VIVEEIR AV
Sbjct: 151 PGEPGPDPAGKEELRQRGLDEWLASLSFDN-----PDCPDLQ-LTMGAVIVEEIRVAVEE 204
Query: 114 KTQFHCSAGIAHNK 127
T F CSAGI+HNK
Sbjct: 205 ATGFRCSAGISHNK 218
>gi|347965825|ref|XP_321730.5| AGAP001404-PA [Anopheles gambiae str. PEST]
gi|333470336|gb|EAA01093.5| AGAP001404-PA [Anopheles gambiae str. PEST]
Length = 929
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 7/133 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV----HERMKSIGHIAASQLSNTFVV 56
YR AG+EV VL F+ ++ERASIDEAY+D+T+ V HE + + +L+NTF V
Sbjct: 100 YREAGKEVADVLKSFTPLLERASIDEAYLDITERVLTRIHEMNEGKFQLRPEKLANTFAV 159
Query: 57 GFGPDNNDEDARK-AGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 115
G+ +N E K + + G +E + +L + IV EIRAAV +T
Sbjct: 160 GY--ENIGEFITKLSNTFDPAGGTAESNSQERLEYKKSDIKLLVGASIVNEIRAAVKERT 217
Query: 116 QFHCSAGIAHNKV 128
F CSAGIAHNK+
Sbjct: 218 GFECSAGIAHNKI 230
>gi|195592306|ref|XP_002085876.1| GD12080 [Drosophila simulans]
gi|194197885|gb|EDX11461.1| GD12080 [Drosophila simulans]
Length = 889
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH----IAASQLSNTFVV 56
YR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V+ RM+ + + +L NTF V
Sbjct: 101 YRDAGKEVANVLQRFTQLLERASVDEAYLDITETVNHRMQQMQSGAFALQPQELVNTFAV 160
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQ-------ELAIAGVIVEEIR 108
G+ P+ D + + Y D + M + D L I + E+R
Sbjct: 161 GY-PNIGDYVNK---ITNRFANPYMDDERYQMSYDQNDLPAVRQSDIRLLIGASVAGEVR 216
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AAV +T + CSAGIAHNK+
Sbjct: 217 AAVKKETGYECSAGIAHNKI 236
>gi|195348695|ref|XP_002040883.1| GM22104 [Drosophila sechellia]
gi|194122393|gb|EDW44436.1| GM22104 [Drosophila sechellia]
Length = 889
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH----IAASQLSNTFVV 56
YR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V+ RM+ + + +L NTF V
Sbjct: 101 YRDAGKEVANVLQRFTQLLERASVDEAYLDITETVNHRMQQMQSGAFALQPQELVNTFAV 160
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQ-------ELAIAGVIVEEIR 108
G+ P+ D + + Y D + M + D L I + E+R
Sbjct: 161 GY-PNIGDYVNK---ITNRFANPYMDDERYQMSYDQNDLPAVRQSDIRLLIGASVAGEVR 216
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AAV +T + CSAGIAHNK+
Sbjct: 217 AAVKKETGYECSAGIAHNKI 236
>gi|170034418|ref|XP_001845071.1| DNA polymerase eta [Culex quinquefasciatus]
gi|167875704|gb|EDS39087.1| DNA polymerase eta [Culex quinquefasciatus]
Length = 820
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 26/143 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIG----HIAASQLSNTFVV 56
YR+AG+EV AVL F+ ++ERAS+DEAY+D+T+ V R+ + H+ L NTF V
Sbjct: 100 YRDAGKEVAAVLQTFTPLLERASVDEAYMDITERVLARLHDMNVGKFHLQPETLDNTFAV 159
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ-----------ELAIAGVIVE 105
G+ V +++ ++ D D + + +L I IV
Sbjct: 160 GY-----------ESVGQYVQKISCDLDGRSSSQELESEEDRVAYKKSDIKLLIGASIVN 208
Query: 106 EIRAAVLSKTQFHCSAGIAHNKV 128
EIRAAV KT + CSAGIAHNK+
Sbjct: 209 EIRAAVKEKTGYECSAGIAHNKI 231
>gi|10440504|dbj|BAB15799.1| dpol-eta [Drosophila melanogaster]
gi|12083719|dbj|BAB20905.1| DNA polymerase eta [Drosophila melanogaster]
gi|16198323|gb|AAL14000.1| SD05329p [Drosophila melanogaster]
Length = 885
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 16/140 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH----IAASQLSNTFVV 56
YR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V+ RM+ + + +L NTF V
Sbjct: 101 YRDAGKEVANVLQRFTQLLERASVDEAYLDITETVNHRMQQMQSGAFALQPQELVNTFAV 160
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQ-------ELAIAGVIVEEIR 108
G+ P D + + Y D + M + D L I + E+R
Sbjct: 161 GY-PSIGDYVNK---ITNRFANPYMDDERYQMSYDQNDLPAVRQSDIRLLIGASVAGEVR 216
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AAV +T + CSAGIAHNK+
Sbjct: 217 AAVKKETGYECSAGIAHNKI 236
>gi|24668444|ref|NP_649371.2| DNApol-eta [Drosophila melanogaster]
gi|7296509|gb|AAF51794.1| DNApol-eta [Drosophila melanogaster]
Length = 885
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 16/140 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH----IAASQLSNTFVV 56
YR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V+ RM+ + + +L NTF V
Sbjct: 101 YRDAGKEVANVLQRFTQLLERASVDEAYLDITETVNHRMQQMQSGAFALQPQELVNTFAV 160
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQ-------ELAIAGVIVEEIR 108
G+ P D + + Y D + M + D L I + E+R
Sbjct: 161 GY-PSIGDYVNK---ITNRFANPYMDDERYQMSYDQNDLPAVRQSDIRLLIGASVAGEVR 216
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AAV +T + CSAGIAHNK+
Sbjct: 217 AAVKKETGYECSAGIAHNKI 236
>gi|410931299|ref|XP_003979033.1| PREDICTED: DNA polymerase eta-like, partial [Takifugu rubripes]
Length = 245
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 74/130 (56%), Gaps = 20/130 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIAASQLSNTFVVGF 58
YR A EVI V+S F+ ++ERASIDEAY+DLT V +R+K++ I A L
Sbjct: 92 YREASVEVIEVMSRFA-VIERASIDEAYMDLTAAVQQRLKNLNDSPIDAHLL-------- 142
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
++ R GV +WL + ++ E + +L + +IVEE+RAAV T F
Sbjct: 143 ------KEQRSRGVQQWLAML---PLPAVGEQSSAELQLTVGALIVEEMRAAVEKHTGFQ 193
Query: 119 CSAGIAHNKV 128
CSAGI+HNKV
Sbjct: 194 CSAGISHNKV 203
>gi|195440450|ref|XP_002068055.1| GK12166 [Drosophila willistoni]
gi|194164140|gb|EDW79041.1| GK12166 [Drosophila willistoni]
Length = 864
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 16/140 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIG----HIAASQLSNTFVV 56
YR+AG+EV VL +F+ +ERAS+DEAY+D+T+ V++R K + + +L NTF V
Sbjct: 102 YRDAGKEVANVLQKFTKQLERASVDEAYLDITETVNQRQKELQTGAFTLQPQELVNTFAV 161
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDT-SLMENTEDFQ-------ELAIAGVIVEEIR 108
G+ DN E K + + Y D + L+ + D L I I E+R
Sbjct: 162 GY--DNMGEYVNK--ITKRFSNPYMDDERFQLVYDQNDLPSVRQSDIRLLIGACIAGEVR 217
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AAV +T + CSAG+AHNK+
Sbjct: 218 AAVKKETGYECSAGVAHNKI 237
>gi|195161139|ref|XP_002021427.1| GL25322 [Drosophila persimilis]
gi|194118540|gb|EDW40583.1| GL25322 [Drosophila persimilis]
Length = 892
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 57/147 (38%), Positives = 76/147 (51%), Gaps = 30/147 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK--SIGHIA--ASQLSNTFVV 56
YR+AG+EV VL F+ ++ERAS+DEAY+D+TD V+ RMK IG A +L NTF V
Sbjct: 101 YRDAGKEVANVLQRFTQLLERASVDEAYLDITDTVNLRMKQLQIGAFALKPQELVNTFAV 160
Query: 57 GFG---------------PDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAG 101
G+ P NDE + + Y D + ++ L I
Sbjct: 161 GYANIGDYVNKITNLFANPYINDERFQLS---------YDQNDLPAVRQSD--IRLLIGA 209
Query: 102 VIVEEIRAAVLSKTQFHCSAGIAHNKV 128
I E+RAAV T + CSAGIAHNK+
Sbjct: 210 SIAGEVRAAVKKDTGYDCSAGIAHNKI 236
>gi|198465285|ref|XP_001353578.2| GA20133 [Drosophila pseudoobscura pseudoobscura]
gi|198150090|gb|EAL31091.2| GA20133 [Drosophila pseudoobscura pseudoobscura]
Length = 894
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 57/147 (38%), Positives = 76/147 (51%), Gaps = 30/147 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK--SIGHIA--ASQLSNTFVV 56
YR+AG+EV VL F+ ++ERAS+DEAY+D+TD V+ RMK IG A +L NTF V
Sbjct: 101 YRDAGKEVANVLQRFTQLLERASVDEAYLDITDTVNLRMKQLQIGAFALKPQELVNTFAV 160
Query: 57 GFG---------------PDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAG 101
G+ P NDE + + Y D + ++ L I
Sbjct: 161 GYANIGDYVNKITNLFANPYINDERFQLS---------YDQNDLPAVRQSD--IRLLIGA 209
Query: 102 VIVEEIRAAVLSKTQFHCSAGIAHNKV 128
I E+RAAV T + CSAGIAHNK+
Sbjct: 210 SIAGEVRAAVKKDTGYDCSAGIAHNKI 236
>gi|168033798|ref|XP_001769401.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679321|gb|EDQ65770.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 446
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 56/132 (42%), Positives = 75/132 (56%), Gaps = 19/132 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM----KSIGHIAASQLSNTFVV 56
YR+AG EV+ VLS I ERASIDE Y+D+T+ R+ S+G ++ + T ++
Sbjct: 97 YRDAGTEVVEVLSR-GGICERASIDEVYLDITEAAAARLIKGLPSLGTLS-EEARKTHIL 154
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQ 116
G D E+A AG EWL Q +L LA +IV E+RAAVL++TQ
Sbjct: 155 GLEEDG--ENAMTAG--EWLCQSNVPRCDAL---------LACGALIVAELRAAVLAETQ 201
Query: 117 FHCSAGIAHNKV 128
F CSAGI HNK+
Sbjct: 202 FTCSAGIGHNKM 213
>gi|194876038|ref|XP_001973703.1| GG13193 [Drosophila erecta]
gi|190655486|gb|EDV52729.1| GG13193 [Drosophila erecta]
Length = 890
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 55/138 (39%), Positives = 76/138 (55%), Gaps = 12/138 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK--SIGHIA--ASQLSNTFVV 56
YR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V+ RM+ IG A +L NTF V
Sbjct: 101 YRDAGKEVANVLQRFTQLLERASVDEAYLDITETVNHRMQQMQIGAFALQPQELVNTFAV 160
Query: 57 GF---GPDNNDEDARKAGVM---EWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
G+ G N R A E Y D + ++ L I + E+RAA
Sbjct: 161 GYPNIGDYVNKITNRFANPYMDDERFQMSYDQNDLPAVRQSD--IRLLIGASVAGEVRAA 218
Query: 111 VLSKTQFHCSAGIAHNKV 128
V +T + CSAGIAHNK+
Sbjct: 219 VKKETGYECSAGIAHNKI 236
>gi|156387566|ref|XP_001634274.1| predicted protein [Nematostella vectensis]
gi|156221355|gb|EDO42211.1| predicted protein [Nematostella vectensis]
Length = 345
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 11/130 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK--SIGHIAASQLSNTFVVGF 58
YR+AG EV+ VL+ + + ERAS+DEAY+DLT+ +++ ++ IA T + G
Sbjct: 91 YRDAGAEVLEVLTTYCDNCERASVDEAYLDLTNSAQKKLSVMTVPEIAEEVWRTTAIEGL 150
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
+D EWL Q +E + + LA VI E+R AVL KT F
Sbjct: 151 SSKGSDTTISDELQKEWLSQ---------LEASPYLRNLAAGAVIAAEMRHAVLEKTGFT 201
Query: 119 CSAGIAHNKV 128
CSAG+A NKV
Sbjct: 202 CSAGVATNKV 211
>gi|195022393|ref|XP_001985566.1| GH17135 [Drosophila grimshawi]
gi|193899048|gb|EDV97914.1| GH17135 [Drosophila grimshawi]
Length = 871
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 12/138 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIA--ASQLSNTFVV 56
YR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V++R++ + G +A +L N++ V
Sbjct: 102 YRDAGKEVANVLQRFTQLLERASVDEAYLDITETVNQRVQQLETGSLALKPEELVNSYAV 161
Query: 57 GF---GPDNNDEDARKAGVM---EWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
G+ G N R A E Y D + ++ L I I E+RAA
Sbjct: 162 GYENIGDYVNKITKRFANPYVDDERFMLAYDANDLPAVRQSD--LRLLIGACIAGEVRAA 219
Query: 111 VLSKTQFHCSAGIAHNKV 128
V ++T + CSAGIAHNK+
Sbjct: 220 VKAETGYECSAGIAHNKI 237
>gi|302770725|ref|XP_002968781.1| hypothetical protein SELMODRAFT_90560 [Selaginella moellendorffii]
gi|300163286|gb|EFJ29897.1| hypothetical protein SELMODRAFT_90560 [Selaginella moellendorffii]
Length = 444
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 13/130 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM--KSIGHIAASQLSNTFVVGF 58
YR+AG EV+AVLS ERASIDE Y+D+T+ ER+ K + + + + S + +VG
Sbjct: 97 YRDAGSEVVAVLSRVGK-CERASIDEVYLDVTEAA-ERLSSKDLSTLVSEEASTSHIVGL 154
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
E + K G EW + + + L LA +I+ +IR AVL++T+F
Sbjct: 155 PQVRWLESSAKLGTKEWFCRPDASREDHL---------LACGAIIIADIRLAVLAETEFT 205
Query: 119 CSAGIAHNKV 128
CSAG+AHNK+
Sbjct: 206 CSAGVAHNKM 215
>gi|91094387|ref|XP_971192.1| PREDICTED: similar to DNA polymerase eta [Tribolium castaneum]
gi|270014910|gb|EFA11358.1| hypothetical protein TcasGA2_TC011515 [Tribolium castaneum]
Length = 679
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 18/129 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM-KSIGHIAASQLSNTFVVGFG 59
YR+AG+ V VL F+ +++RAS+DEAY+D+T++V +R+ K + + LSNTFVVG
Sbjct: 91 YRDAGKRVADVLLTFTPLLQRASVDEAYLDITEIVEKRIEKGLDDLTLINLSNTFVVG-- 148
Query: 60 PDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHC 119
+ ++L ++ + S+ +LA+ G++ EEIR V T + C
Sbjct: 149 ----------CELEDFLHNAITNKEYSIPN-----LKLAVGGLVTEEIRREVFKVTGYKC 193
Query: 120 SAGIAHNKV 128
SAGIAHNK+
Sbjct: 194 SAGIAHNKI 202
>gi|194752317|ref|XP_001958469.1| GF23499 [Drosophila ananassae]
gi|190625751|gb|EDV41275.1| GF23499 [Drosophila ananassae]
Length = 876
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 14/139 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH----IAASQLSNTFVV 56
YR+AG+EV VL F+ ++ERAS+DEAY+D+TD V+ R+K + + +L NT+ V
Sbjct: 101 YRDAGKEVANVLQRFTQLLERASVDEAYLDITDTVNLRIKQMESGAFALKPQELVNTYAV 160
Query: 57 GFGPDNNDEDARKAGVM-------EWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRA 109
G+ PD D + E Y D + ++ L I + E+RA
Sbjct: 161 GY-PDIGDYVNKITNRFSNPYIEDERFQLSYDQNDLPAVRQSD--IRLLIGAAVAGEVRA 217
Query: 110 AVLSKTQFHCSAGIAHNKV 128
AV +T + CSAGIAHNK+
Sbjct: 218 AVKKETGYECSAGIAHNKI 236
>gi|195496653|ref|XP_002095784.1| GE19515 [Drosophila yakuba]
gi|194181885|gb|EDW95496.1| GE19515 [Drosophila yakuba]
Length = 895
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 12/138 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH----IAASQLSNTFVV 56
YR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V+ RM+ + + +L NTF V
Sbjct: 101 YRDAGKEVANVLQRFTKLLERASVDEAYLDITETVNHRMQQMQSGAFALQPQELVNTFAV 160
Query: 57 GF---GPDNNDEDARKAGVM---EWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
G+ G N R A E Y D + ++ L I + E+RAA
Sbjct: 161 GYPNIGDFVNKITNRFANPYMDDERFQMSYDQNDLPAVRQSD--IRLLIGASVAGEVRAA 218
Query: 111 VLSKTQFHCSAGIAHNKV 128
V +T + CSAGIAHNK+
Sbjct: 219 VKKETGYECSAGIAHNKI 236
>gi|195379088|ref|XP_002048313.1| GJ11416 [Drosophila virilis]
gi|194155471|gb|EDW70655.1| GJ11416 [Drosophila virilis]
Length = 871
Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 16/140 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIA--ASQLSNTFVV 56
YR+AG+EV VL F+N++ERAS+DEAY+D+T+ V++R++ + G A +L N V
Sbjct: 102 YRDAGKEVANVLQRFTNLLERASVDEAYLDITETVNQRVEQLQAGSFALKPQELVNCHAV 161
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQ-------ELAIAGVIVEEIR 108
G+ DN + K + Y D + ++ + D L I I E+R
Sbjct: 162 GY--DNIGDYVNK--ITNRFANPYVDDERYMLAYDPNDLPAVRQSDLRLLIGACIAGEVR 217
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AAV ++T + CSAGIAHNK+
Sbjct: 218 AAVKAETGYECSAGIAHNKI 237
>gi|195128223|ref|XP_002008564.1| GI11744 [Drosophila mojavensis]
gi|193920173|gb|EDW19040.1| GI11744 [Drosophila mojavensis]
Length = 894
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 16/140 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIA--ASQLSNTFVV 56
YR+AG+EV VL F+ ++ERAS+DEAY+D+T+ V++R++ + G A +L N V
Sbjct: 102 YRDAGKEVANVLQRFTQLLERASVDEAYLDITETVNQRVEQLQTGSFALKPEELVNCHAV 161
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQ-------ELAIAGVIVEEIR 108
G+ DN E K + Y D + ++ + D L I I E+R
Sbjct: 162 GY--DNIGEYVNK--ITNRFSNPYVDDERYVLAYDPNDLPAVRQSDLRLLIGACIAGEVR 217
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AAV ++T + CSAGIAHNK+
Sbjct: 218 AAVKAETGYECSAGIAHNKI 237
>gi|326524061|dbj|BAJ97041.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 542
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/133 (39%), Positives = 71/133 (53%), Gaps = 19/133 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM-----KSIGHIAASQLSNTFV 55
YRNAG EV+A+LS ERASIDE Y+DLTD E + +S G I + + + +
Sbjct: 97 YRNAGSEVVAILST-KGKCERASIDEVYLDLTDAAKEMLLESPPESSGSIF-EEATKSNI 154
Query: 56 VGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 115
+ D D R+ V WL + +D L LA ++V ++R VL +T
Sbjct: 155 LDLPSDAGD---REENVKAWLCRADADYQDKL---------LACGAILVAQLRVKVLEET 202
Query: 116 QFHCSAGIAHNKV 128
QF CSAGIAHNK+
Sbjct: 203 QFTCSAGIAHNKM 215
>gi|332030091|gb|EGI69916.1| DNA polymerase eta [Acromyrmex echinatior]
Length = 787
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 12/109 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQ----LSNTFVV 56
YR AGREVI V+ + N++ERAS+DEAY+D+TD+V +R+ + ++ Q L+NT+VV
Sbjct: 92 YRKAGREVIQVIKKHCNVIERASVDEAYLDITDIVDKRLAA-SKVSPKQLISFLANTYVV 150
Query: 57 GFGPDN-NDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIV 104
G+ N N+E+ R G+ W+ + + + + Q+LAIAG+I+
Sbjct: 151 GYSEINKNNEEERCKGLQTWILNSFKEL------HDDQAQKLAIAGIII 193
>gi|391347259|ref|XP_003747882.1| PREDICTED: DNA polymerase eta-like [Metaseiulus occidentalis]
Length = 270
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 69/133 (51%), Gaps = 31/133 (23%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR AG EV+ V F +VERASIDEAYIDLT +V ++ + + L N + G+
Sbjct: 96 YRQAGAEVLKVFCSFGAVVERASIDEAYIDLTGLVANKLTC---VPTAALGNASIEGY-- 150
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMEN---TEDFQE--LAIAGVIVEEIRAAVLSKT 115
EDA TS +E TED + LA I+ E+RA VL +T
Sbjct: 151 ----EDA-----------------TSFLEQVDWTEDGGDAYLARGAAIMMEMRAKVLQET 189
Query: 116 QFHCSAGIAHNKV 128
F CSAGI+HNK+
Sbjct: 190 GFTCSAGISHNKI 202
>gi|357136514|ref|XP_003569849.1| PREDICTED: DNA polymerase eta-like [Brachypodium distachyon]
Length = 632
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 17/132 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM----KSIGHIAASQLSNTFVV 56
YR+AG EV+A+LS ERASIDE Y+DLTD ER+ I + + + ++
Sbjct: 97 YRSAGSEVVAILST-KGKCERASIDEVYLDLTDAAKERLLESPPESSEIIFEEATKSNIL 155
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQ 116
D ++ R+ V WL + +D L LA +IV ++R VL +TQ
Sbjct: 156 DLSSDVSN---REENVRAWLCRADADYQDKL---------LACGAIIVAQLRIKVLEETQ 203
Query: 117 FHCSAGIAHNKV 128
F CSAGIAHNK+
Sbjct: 204 FTCSAGIAHNKM 215
>gi|255574476|ref|XP_002528150.1| DNA polymerase eta, putative [Ricinus communis]
gi|223532448|gb|EEF34241.1| DNA polymerase eta, putative [Ricinus communis]
Length = 560
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 16/132 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH----IAASQLSNTFVV 56
YRNAG EV+++L+ ERASIDE Y+DLTD +K + ++ + V+
Sbjct: 97 YRNAGSEVVSILAR-KGRCERASIDEVYLDLTDSAEAMLKDTPPNSLDVIDDEVLKSHVL 155
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQ 116
G +N + DA K V EWL + +D L LA +IV E+R VL +T+
Sbjct: 156 GLKNENGN-DA-KEDVREWLCRNDADHRDKL---------LACGAIIVAELRMQVLKETE 204
Query: 117 FHCSAGIAHNKV 128
F CSAGIAHNK+
Sbjct: 205 FTCSAGIAHNKM 216
>gi|428181880|gb|EKX50742.1| hypothetical protein GUITHDRAFT_39857, partial [Guillardia theta
CCMP2712]
Length = 334
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 69/137 (50%), Gaps = 23/137 (16%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--------GHIAASQLSN 52
YR AG EV+ VL+ FS+ ERASIDE Y D+TD ++ I G ++
Sbjct: 104 YREAGAEVVNVLARFSSACERASIDEVYCDITDAALLQLDEIERNFGADVGPTLLDEMDK 163
Query: 53 TFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGV-IVEEIRAAV 111
T+V G+ E G EW + S TS + L AG +V ++R AV
Sbjct: 164 TWVAGY------EQQTGNGQEEWWRRPLSRWKTS--------ERLLAAGAQVVTKMRRAV 209
Query: 112 LSKTQFHCSAGIAHNKV 128
L +T F CSAGI+HNK+
Sbjct: 210 LEETSFTCSAGISHNKI 226
>gi|414880430|tpg|DAA57561.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 220
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 17/132 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAAS----QLSNTFVV 56
YR+AG EV+A+L+ ERASIDE Y+DLTD +E + + + + + ++
Sbjct: 97 YRSAGAEVVAILASKGK-CERASIDEVYLDLTDAANEMVLQAPPDSPEGIFMEAAKSNIL 155
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQ 116
G D ++ ++ V WL Q +D L LA +IV ++R VL +TQ
Sbjct: 156 GLPADASE---KEKNVRAWLCQSEADYQDKL---------LACGAIIVAQLRVRVLEETQ 203
Query: 117 FHCSAGIAHNKV 128
F CSAGIAHNKV
Sbjct: 204 FTCSAGIAHNKV 215
>gi|302822456|ref|XP_002992886.1| hypothetical protein SELMODRAFT_136073 [Selaginella moellendorffii]
gi|300139334|gb|EFJ06077.1| hypothetical protein SELMODRAFT_136073 [Selaginella moellendorffii]
Length = 436
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 19/129 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE-RMKSIGHIAASQLSNTFVVGFG 59
YR+AG EV+AVLS ERASIDE Y+D+T+ K + + + + S + +VG
Sbjct: 97 YRDAGSEVVAVLSRVGK-CERASIDEVYLDVTEAAKRLSSKDLSTLVSEEASTSHIVGL- 154
Query: 60 PDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHC 119
++ G EW + + + L LA +IV +IR AVL++T+F C
Sbjct: 155 -------PQELGTKEWFCRPDASREDHL---------LACGAIIVADIRLAVLAETEFTC 198
Query: 120 SAGIAHNKV 128
SAG+AHNK+
Sbjct: 199 SAGVAHNKM 207
>gi|115440035|ref|NP_001044297.1| Os01g0757800 [Oryza sativa Japonica Group]
gi|57900368|dbj|BAD87578.1| putative DNA polymerase [Oryza sativa Japonica Group]
gi|113533828|dbj|BAF06211.1| Os01g0757800 [Oryza sativa Japonica Group]
Length = 642
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 19/133 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM----KSIGHIAASQLSNTFVV 56
YR+AG EV+ +LS ERASIDE Y+DLTD E + + + + + + ++
Sbjct: 97 YRSAGSEVVTILST-KGKCERASIDEVYLDLTDAAKEMLLESPPELLELIFEEATKSNIL 155
Query: 57 GFGPD-NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 115
G D +N ED+ +A WL + +D L L+ +IV ++R VL +T
Sbjct: 156 GLPSDVSNREDSVRA----WLCRADADYQDKL---------LSCGAIIVAQLRVKVLEET 202
Query: 116 QFHCSAGIAHNKV 128
QF CSAGIAHNK+
Sbjct: 203 QFTCSAGIAHNKM 215
>gi|57900369|dbj|BAD87579.1| putative DNA polymerase [Oryza sativa Japonica Group]
Length = 634
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 19/133 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM----KSIGHIAASQLSNTFVV 56
YR+AG EV+ +LS ERASIDE Y+DLTD E + + + + + + ++
Sbjct: 97 YRSAGSEVVTILST-KGKCERASIDEVYLDLTDAAKEMLLESPPELLELIFEEATKSNIL 155
Query: 57 GFGPD-NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 115
G D +N ED+ +A WL + +D L L+ +IV ++R VL +T
Sbjct: 156 GLPSDVSNREDSVRA----WLCRADADYQDKL---------LSCGAIIVAQLRVKVLEET 202
Query: 116 QFHCSAGIAHNKV 128
QF CSAGIAHNK+
Sbjct: 203 QFTCSAGIAHNKM 215
>gi|222619273|gb|EEE55405.1| hypothetical protein OsJ_03511 [Oryza sativa Japonica Group]
Length = 621
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 19/133 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM----KSIGHIAASQLSNTFVV 56
YR+AG EV+ +LS ERASIDE Y+DLTD E + + + + + + ++
Sbjct: 84 YRSAGSEVVTILST-KGKCERASIDEVYLDLTDAAKEMLLESPPELLELIFEEATKSNIL 142
Query: 57 GFGPD-NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 115
G D +N ED+ +A WL + +D L L+ +IV ++R VL +T
Sbjct: 143 GLPSDVSNREDSVRA----WLCRADADYQDKL---------LSCGAIIVAQLRVKVLEET 189
Query: 116 QFHCSAGIAHNKV 128
QF CSAGIAHNK+
Sbjct: 190 QFTCSAGIAHNKM 202
>gi|414880431|tpg|DAA57562.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 480
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 21/134 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI------GHIAASQLSNTF 54
YR+AG EV+A+L+ ERASIDE Y+DLTD +E + G + SN
Sbjct: 97 YRSAGAEVVAILAS-KGKCERASIDEVYLDLTDAANEMVLQAPPDSPEGIFMEAAKSN-- 153
Query: 55 VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSK 114
++G D ++ ++ V WL Q +D L LA +IV ++R VL +
Sbjct: 154 ILGLPADASE---KEKNVRAWLCQSEADYQDKL---------LACGAIIVAQLRVRVLEE 201
Query: 115 TQFHCSAGIAHNKV 128
TQF CSAGIAHNK+
Sbjct: 202 TQFTCSAGIAHNKM 215
>gi|413943903|gb|AFW76552.1| hypothetical protein ZEAMMB73_679088 [Zea mays]
Length = 409
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 69/134 (51%), Gaps = 21/134 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI------GHIAASQLSNTF 54
YR+AG EV+A+L+ ERASIDE Y+DLTD E + G + SN
Sbjct: 164 YRSAGAEVVAILAS-KGKCERASIDEVYLDLTDAAKEMLLQAPPDSPEGIFMEAAKSN-- 220
Query: 55 VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSK 114
++G D ++ ++ V WL Q +D L L +IV ++R VL +
Sbjct: 221 ILGLPADASE---KEKNVRAWLCQSEADYQDKL---------LTCGAIIVAQLRVRVLEE 268
Query: 115 TQFHCSAGIAHNKV 128
TQF CSAGIAHNK+
Sbjct: 269 TQFTCSAGIAHNKM 282
>gi|242054469|ref|XP_002456380.1| hypothetical protein SORBIDRAFT_03g035050 [Sorghum bicolor]
gi|241928355|gb|EES01500.1| hypothetical protein SORBIDRAFT_03g035050 [Sorghum bicolor]
Length = 636
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 25/136 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR+AG EV+A+L+ ERASIDE Y+DLTD E ++ P
Sbjct: 97 YRSAGSEVVAILAS-KGKCERASIDEVYLDLTDAAKE----------------MLLQAPP 139
Query: 61 DNNDE---DARKAGVMEWL---GQVYSDTDTSLMENTEDFQE--LAIAGVIVEEIRAAVL 112
D+ +E +A K+ ++ L G+ + L + D+Q+ LA +IV ++R VL
Sbjct: 140 DSQEEIFMEAAKSNILGLLSDAGEKEKNVRAWLCRSDADYQDKLLACGAIIVAQLRVRVL 199
Query: 113 SKTQFHCSAGIAHNKV 128
+TQF CSAGIAHNK+
Sbjct: 200 EETQFTCSAGIAHNKM 215
>gi|414880429|tpg|DAA57560.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 623
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 21/134 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI------GHIAASQLSNTF 54
YR+AG EV+A+L+ ERASIDE Y+DLTD +E + G + SN
Sbjct: 71 YRSAGAEVVAILAS-KGKCERASIDEVYLDLTDAANEMVLQAPPDSPEGIFMEAAKSN-- 127
Query: 55 VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSK 114
++G D ++ ++ V WL Q +D L LA +IV ++R VL +
Sbjct: 128 ILGLPADASE---KEKNVRAWLCQSEADYQDKL---------LACGAIIVAQLRVRVLEE 175
Query: 115 TQFHCSAGIAHNKV 128
TQF CSAGIAHNK+
Sbjct: 176 TQFTCSAGIAHNKM 189
>gi|297791325|ref|XP_002863547.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata]
gi|297309382|gb|EFH39806.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata]
Length = 672
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 14/131 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVG--- 57
YR AG EV+++L++ S ERASIDE Y+DLTD E M + + +L + V+
Sbjct: 97 YRGAGSEVVSILAK-SGKCERASIDEVYLDLTDAA-ESMLADAPPESLELIDEEVLKSHI 154
Query: 58 FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
G D D K V +W+ + +D L L+ +IV E+R VL +T+F
Sbjct: 155 LGMSREDGDDFKENVRDWICRKDADRREKL---------LSCGIIIVAELRKQVLKETEF 205
Query: 118 HCSAGIAHNKV 128
CSAGIAHNK+
Sbjct: 206 TCSAGIAHNKM 216
>gi|30694599|ref|NP_568638.2| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|23954185|emb|CAC94893.1| putative DNA polymerase eta [Arabidopsis thaliana]
gi|332007772|gb|AED95155.1| DNA polymerase eta subunit [Arabidopsis thaliana]
Length = 672
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 14/131 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVG--- 57
YR+AG EV+++L++ S ERASIDE Y+DLTD E M + + +L + V+
Sbjct: 97 YRSAGSEVVSILAK-SGKCERASIDEVYLDLTDAA-ESMLADAPPESLELIDEEVLKSHI 154
Query: 58 FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
G + D D K V W+ + +D L L+ +IV E+R VL +T+F
Sbjct: 155 LGMNREDGDDFKESVRNWICREDADRRDKL---------LSCGIIIVAELRKQVLKETEF 205
Query: 118 HCSAGIAHNKV 128
CSAGIAHNK+
Sbjct: 206 TCSAGIAHNKM 216
>gi|324509837|gb|ADY44123.1| DNA polymerase eta [Ascaris suum]
Length = 602
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 20/140 (14%)
Query: 1 YRNAGREVIAVLSEFSN--IVERASIDEAYIDLTDVVHERMKS-IGHIAASQLSNTFVVG 57
YRNA EV+ VL+ F + IVERASIDEAY+DL+++V ++S + S + F
Sbjct: 95 YRNASAEVLDVLNGFDSRIIVERASIDEAYLDLSELVDYIVESETPSLKYSCSLDMFPTT 154
Query: 58 FGPDNNDEDA---------RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIR 108
+ ND A R+A + EW+ + +L LA+A IVE IR
Sbjct: 155 HLANGNDIKASNETIWKYDREANLREWIIEACVQQRQAL--------RLAVAAEIVERIR 206
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
A + KTQF CSAGI NK+
Sbjct: 207 AEIKEKTQFSCSAGIGSNKM 226
>gi|145281847|gb|ABP49608.1| translesion synthesis DNA polymerase eta splice variant
[Arabidopsis thaliana]
Length = 350
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 14/131 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVG--- 57
YR+AG EV+++L++ S ERASIDE Y+DLTD E M + + +L + V+
Sbjct: 97 YRSAGSEVVSILAK-SGKCERASIDEVYLDLTDAA-ESMLADAPPESLELIDEEVLKSHI 154
Query: 58 FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
G + D D K V W+ + +D L L+ +IV E+R VL +T+F
Sbjct: 155 LGMNREDGDDFKESVRNWICREDADRRDKL---------LSCGIIIVAELRKQVLKETEF 205
Query: 118 HCSAGIAHNKV 128
CSAGIAHNK+
Sbjct: 206 TCSAGIAHNKM 216
>gi|449526991|ref|XP_004170496.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus]
Length = 557
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 70/133 (52%), Gaps = 18/133 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM-----KSIGHIAASQLSNTFV 55
YR+AG EV+ VLS+ ERASIDE Y+DLTD + +S+ I L + +
Sbjct: 97 YRDAGSEVVRVLSK-KGRCERASIDEVYLDLTDAAEAMLVETPPESMEAIDVEALKSHVL 155
Query: 56 VGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 115
G D ++ + V +WL + SD L LA +IV E+R VL +T
Sbjct: 156 ---GLDQEEQSDGQECVRKWLTKCDSDYRDKL---------LACGTLIVAELRMQVLKET 203
Query: 116 QFHCSAGIAHNKV 128
+F CSAGIAHNK+
Sbjct: 204 EFTCSAGIAHNKM 216
>gi|449434198|ref|XP_004134883.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus]
Length = 506
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 70/133 (52%), Gaps = 18/133 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM-----KSIGHIAASQLSNTFV 55
YR+AG EV+ VLS+ ERASIDE Y+DLTD + +S+ I L + +
Sbjct: 102 YRDAGSEVVRVLSK-KGRCERASIDEVYLDLTDAAEAMLVETPPESMEAIDVEALKSHVL 160
Query: 56 VGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 115
G D ++ + V +WL + SD L LA +IV E+R VL +T
Sbjct: 161 ---GLDQEEQSDGQECVRKWLTKCDSDYRDKL---------LACGTLIVAELRMQVLKET 208
Query: 116 QFHCSAGIAHNKV 128
+F CSAGIAHNK+
Sbjct: 209 EFTCSAGIAHNKM 221
>gi|341901232|gb|EGT57167.1| CBN-POLH-1 protein [Caenorhabditis brenneri]
Length = 587
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 18/137 (13%)
Query: 1 YRNAGREVIAVLSEF--SNIVERASIDEAYIDLTDVVHERMKSI---GHI----AASQLS 51
YR+A EV VL+ F S IVE+AS+DEA++DLT +ER++ + G++ A L
Sbjct: 91 YRDASAEVFRVLNNFDTSIIVEKASVDEAFLDLTTYTNERLEELRENGNLEEFTAIEHLP 150
Query: 52 NTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
TF+ G D + D + Q+ +D T + +TE+ L IA VE IR +
Sbjct: 151 TTFLAT-GEDVKENDHLRE-------QMLTDFITGSLHSTENIL-LLIAACTVEAIRDRI 201
Query: 112 LSKTQFHCSAGIAHNKV 128
+TQF+CSAG+ +NK+
Sbjct: 202 HEETQFYCSAGVGNNKM 218
>gi|358348538|ref|XP_003638302.1| DNA polymerase eta [Medicago truncatula]
gi|355504237|gb|AES85440.1| DNA polymerase eta [Medicago truncatula]
Length = 543
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/130 (37%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVG--F 58
YRNAG EV+++LS ERASIDE Y+DLTD + + +
Sbjct: 97 YRNAGSEVVSILSR-KGRCERASIDEVYLDLTDAAQTMLMETPPECVEHVEEEVLKSHVL 155
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
G D D K V +W+ + +D S E LA IV E+R VL +T+F
Sbjct: 156 GLQIKDGDDAKEEVRKWICR----SDASYQEKL-----LACGAFIVAELRMQVLKETEFT 206
Query: 119 CSAGIAHNKV 128
CSAGIAHNK+
Sbjct: 207 CSAGIAHNKM 216
>gi|145281849|gb|ABP49609.1| translesion synthesis DNA polymerase eta splice variant
[Arabidopsis thaliana]
Length = 442
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 14/131 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVG--- 57
YR+AG EV+++L++ S ERASIDE Y+DLTD E M + + +L + V+
Sbjct: 97 YRSAGSEVVSILAK-SGKCERASIDEVYLDLTDAA-ESMLADAPPESLELIDEEVLKSHI 154
Query: 58 FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
G + D D K V W+ + +D L L+ +IV E+R VL +T+F
Sbjct: 155 LGMNREDGDDFKESVRNWICREDADRRDKL---------LSCGIIIVAELRKQVLKETEF 205
Query: 118 HCSAGIAHNKV 128
CSAGIAHNK+
Sbjct: 206 TCSAGIAHNKM 216
>gi|209489406|gb|ACI49169.1| hypothetical protein Csp3_JD01.001 [Caenorhabditis angaria]
Length = 975
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 1 YRNAGREVIAVLSEFSN--IVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGF 58
YR+A EV VL+ + IVE+AS+DEA++DL+ + + ++ S +
Sbjct: 761 YRDASAEVFEVLNNIDSNIIVEKASVDEAFLDLSIYIEKILEVEQETELSDIIGALPTTH 820
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
D ND+ + ++ + + Y +T + E+ ++L IA + +E+IRA + KTQF+
Sbjct: 821 IADGNDKKETEEERIDRIAKFYEETKSD-----ENQKKLMIAAIAIEDIRAKIREKTQFY 875
Query: 119 CSAGIAHNKV 128
CSAGI +NK+
Sbjct: 876 CSAGIGNNKM 885
>gi|359472774|ref|XP_002275643.2| PREDICTED: DNA polymerase eta [Vitis vinifera]
Length = 779
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 68/133 (51%), Gaps = 19/133 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM-----KSIGHIAASQLSNTFV 55
YRNAG EV+++L+ ERASIDE Y+DLTD + +S+ I L + V
Sbjct: 97 YRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLAEMPPESLEAIDEEAL-KSHV 154
Query: 56 VGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 115
+G ND K V WL + +D L LA +IV E+R V +T
Sbjct: 155 LGLNEGGND---IKESVRVWLCRSQADHRDKL---------LACGALIVAELRMQVFRET 202
Query: 116 QFHCSAGIAHNKV 128
+F CSAGIAHNK+
Sbjct: 203 EFTCSAGIAHNKM 215
>gi|23953869|gb|AAN39011.1| putative translesion synthesis polymerase RAD30 [Arabidopsis
thaliana]
Length = 672
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 14/131 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVG--- 57
YR+AG EV+++L++ S ERASIDE Y+DLTD E M + + +L + V+
Sbjct: 97 YRSAGSEVVSILAK-SGKCERASIDEVYLDLTDAA-ESMLADAPPESLELIDEEVLKSHI 154
Query: 58 FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
G + D D K V W+ + +D L L+ +IV E+R VL +T+
Sbjct: 155 LGMNREDGDDFKESVRNWICREDADRRDKL---------LSCGIIIVAELRKQVLKETEL 205
Query: 118 HCSAGIAHNKV 128
CSAGIAHNK+
Sbjct: 206 TCSAGIAHNKM 216
>gi|297738026|emb|CBI27227.3| unnamed protein product [Vitis vinifera]
Length = 773
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 68/133 (51%), Gaps = 19/133 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM-----KSIGHIAASQLSNTFV 55
YRNAG EV+++L+ ERASIDE Y+DLTD + +S+ I L + V
Sbjct: 97 YRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAEAMLAEMPPESLEAIDEEAL-KSHV 154
Query: 56 VGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 115
+G ND K V WL + +D L LA +IV E+R V +T
Sbjct: 155 LGLNEGGND---IKESVRVWLCRSQADHRDKL---------LACGALIVAELRMQVFRET 202
Query: 116 QFHCSAGIAHNKV 128
+F CSAGIAHNK+
Sbjct: 203 EFTCSAGIAHNKM 215
>gi|449675574|ref|XP_004208438.1| PREDICTED: DNA polymerase eta-like, partial [Hydra magnipapillata]
Length = 333
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 18/136 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKS--IGHIAASQLSNTFVVGF 58
+R AG EVI +L+ F++ +ERAS+DEAY+DLT++++ + I +A NT +VG
Sbjct: 93 FREAGAEVIEILAGFADCLERASVDEAYMDLTELINRDFCNYDIEEVALHTFQNTNIVGI 152
Query: 59 GPDN------NDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
DN + +D K + + +V + +E+ +LAI I +++R V
Sbjct: 153 --DNMVTGLTDTQDILKCDLYKQWHEV--------LHRSEENLKLAIGATIADKMRKEVK 202
Query: 113 SKTQFHCSAGIAHNKV 128
K F CSAGI NK+
Sbjct: 203 EKLGFTCSAGIGQNKM 218
>gi|257205730|emb|CAX82516.1| polymerase (DNA directed) [Schistosoma japonicum]
Length = 228
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR A EVI +SEF++ +ERASIDEAY+DLT +V + ++++ Q ++ V
Sbjct: 90 YRVASSEVIQCISEFTSDIERASIDEAYVDLTAIVDSTLDRDNNLSSLQPNSESYVLVNS 149
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
D ++ + + SD L + + + LAIA +V IR A+ KT F CS
Sbjct: 150 DIAEKLNLELTQTNCVSLNGSDWVDLLHSHFAEGKRLAIASELVYRIRQAIFRKTGFICS 209
Query: 121 AGIAHNKVK 129
AGI NK K
Sbjct: 210 AGIGPNKTK 218
>gi|256075427|ref|XP_002574021.1| DNA polymerase eta [Schistosoma mansoni]
gi|353229352|emb|CCD75523.1| putative DNA polymerase eta [Schistosoma mansoni]
Length = 400
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/127 (37%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR+A EVI +SEF++ +ERASIDEAY+DLT ++ + S H V
Sbjct: 49 YRDASSEVIQCISEFTSDIERASIDEAYVDLTVLIQDHNLSSLHPNPESY-----VLVNS 103
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
D +E + + D L N + + LA+A +V IR AV +KT F CS
Sbjct: 104 DIAEESKLELTETNCVSLSGVDWIKLLDSNFAEGRRLAVASELVYRIRQAVFTKTGFKCS 163
Query: 121 AGIAHNK 127
AGI NK
Sbjct: 164 AGIGPNK 170
>gi|356528144|ref|XP_003532665.1| PREDICTED: DNA polymerase eta-like [Glycine max]
Length = 703
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVG--F 58
YRNAG EV++VLS+ ERASIDE Y+DLT + + + +
Sbjct: 97 YRNAGSEVVSVLSQ-KGRCERASIDEVYLDLTHAAETMLMETPLDSMQDFEDEVLKSHVL 155
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
G + D K V +WL + +D S + LA +IV ++R VL +T+F
Sbjct: 156 GLEIKDGSDAKDEVRKWLCR----SDASYQDKL-----LACGALIVCDLRMKVLKETEFT 206
Query: 119 CSAGIAHNKV 128
CSAGIAHNK+
Sbjct: 207 CSAGIAHNKM 216
>gi|340368085|ref|XP_003382583.1| PREDICTED: DNA polymerase eta-like [Amphimedon queenslandica]
Length = 583
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 16/134 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAA---SQLSNTFVVG 57
YR A EV+ VLS F++++ERASIDEA++DLT+ V + + S + + L +T V G
Sbjct: 93 YRKASGEVMKVLSGFTSVIERASIDEAFLDLTEPVKDYINSNSFDSLEFHADLKSTHVAG 152
Query: 58 FGPDNNDEDAR---KAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSK 114
D++ + +W S D + L +A ++V+ IR +L++
Sbjct: 153 CNDDDDTHKDDCDLRISRGDWFKSSCSS----------DERVLIVAAILVQRIRETILNE 202
Query: 115 TQFHCSAGIAHNKV 128
F CSAGI+HNK+
Sbjct: 203 VGFTCSAGISHNKM 216
>gi|268571285|ref|XP_002640994.1| C. briggsae CBR-POLH-1 protein [Caenorhabditis briggsae]
Length = 608
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 20/139 (14%)
Query: 1 YRNAGREVIAVLSEFSN--IVERASIDEAYIDLTDVVHERMKSI---GHI------AASQ 49
YR+A EV VL+ F + IVE+AS+DEA++DLT +++++ I G + + Q
Sbjct: 91 YRDASAEVFRVLNNFDSTIIVEKASVDEAFLDLTAYTNQKLEEIRENGQLEEIVKTSLDQ 150
Query: 50 LSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRA 109
L +T + N ED ++ + + SD S +TE+ L IA + VE IR
Sbjct: 151 LPSTHLA------NGEDVKENEHLR--EEFLSDFIESSRNSTENLL-LLIAAITVETIRK 201
Query: 110 AVLSKTQFHCSAGIAHNKV 128
+ +TQF+CSAG+ +NK+
Sbjct: 202 RIRDETQFYCSAGVGNNKM 220
>gi|428179324|gb|EKX48195.1| DNA polymerase eta, replication coupled repair, partial [Guillardia
theta CCMP2712]
Length = 242
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 23/128 (17%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YRNA EV VL ++ IVE+ASIDEAYID+T V+ + I F
Sbjct: 93 YRNASMEVFEVLQQYG-IVEKASIDEAYIDVTKTVNNLYRRI---------------FDL 136
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+ ND D K G+ E + + +T+ ED + L + VI + RA VL T F CS
Sbjct: 137 EQNDAD--KHGLNE-TNDRFDEINTA---KEEDLK-LLLGAVICQAARAGVLEHTSFTCS 189
Query: 121 AGIAHNKV 128
GI+HNK+
Sbjct: 190 GGISHNKM 197
>gi|339234771|ref|XP_003378940.1| DNA polymerase eta [Trichinella spiralis]
gi|316978474|gb|EFV61459.1| DNA polymerase eta [Trichinella spiralis]
Length = 633
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 71/138 (51%), Gaps = 22/138 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER---MKSIG-HIAASQLSNTFVV 56
YR A EV VLS +VERASIDEAY+DLT +V + M++ G +IA L +T +
Sbjct: 79 YRKASEEVFHVLSLCDAVVERASIDEAYLDLTAIVKKELLDMRTEGRYIAEDALKDTHL- 137
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLM------ENTEDFQELAIAGVIVEEIRAA 110
A K +E + + S + SLM EN E I V+V IR
Sbjct: 138 ----------AVKHDSIENIEALISLAN-SLMRNDIIDENAEGIVLHVIGAVLVNRIRKQ 186
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ KT F+CSAGIA NK+
Sbjct: 187 IFEKTNFYCSAGIAVNKM 204
>gi|125527765|gb|EAY75879.1| hypothetical protein OsI_03798 [Oryza sativa Indica Group]
Length = 498
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 73/156 (46%), Gaps = 38/156 (24%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER-MKSIGHIA------ASQ---- 49
YR+AG EV+A+LS ERASIDE Y+DLTD E ++S + A++
Sbjct: 97 YRSAGSEVVAILSTKGK-CERASIDEVYLDLTDAAKEMLLESPPELLELIFEEATKSNIL 155
Query: 50 --------LSNTFVVGFGPDNN---------DEDARKAGVMEWLGQVYSDTDTSLMENTE 92
L + VV D N D R+ V WL + +D L
Sbjct: 156 GLPSVIFVLHDLIVVSLQFDMNVTNRASYVQDVINREDSVRAWLCRADADYQDKL----- 210
Query: 93 DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
L+ +IV ++R VL +TQF CSAGIAHNK+
Sbjct: 211 ----LSCGAIIVAQLRVKVLEETQFTCSAGIAHNKM 242
>gi|71746744|ref|XP_822427.1| DNA polymerase eta [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832095|gb|EAN77599.1| DNA polymerase eta, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 525
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR A R++ +L F + VE+ S+DEA++D+T H + +G + +SQ
Sbjct: 99 YREASRKIFRILDSFDGVEVEKGSVDEAFLDVTKAAHMKQGEMG-LLSSQGELRLEDVAD 157
Query: 60 PDNNDEDARKAGVMEWL---GQVYSDT-DTSL--MENTEDFQELAIAGVIVEEIRAAVLS 113
P +R+A + WL G+ +SD D +L E+ LA A +V IR +
Sbjct: 158 PTTIVIPSRQAEIAAWLKEHGREFSDVFDVTLHPQPTAENMSLLAAASRVVWTIRQKIYD 217
Query: 114 KTQFHCSAGIAHNKV 128
+ ++ CSAGIAHNK+
Sbjct: 218 ELRYDCSAGIAHNKL 232
>gi|261332129|emb|CBH15122.1| DNA polymerase eta, putative [Trypanosoma brucei gambiense DAL972]
Length = 525
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR A R++ +L F + VE+ S+DEA++D+T H + +G + +SQ
Sbjct: 99 YREASRKIFRILDSFDGVEVEKGSVDEAFLDVTKAAHMKQGEMG-LLSSQGELRLEDVAD 157
Query: 60 PDNNDEDARKAGVMEWL---GQVYSDT-DTSL--MENTEDFQELAIAGVIVEEIRAAVLS 113
P +R+A + WL G+ +SD D +L E+ LA A +V IR +
Sbjct: 158 PTTIVIPSRQAEIAAWLKEHGREFSDVFDVTLHPQPTAENMSLLAAASRVVWTIRQKIYD 217
Query: 114 KTQFHCSAGIAHNKV 128
+ ++ CSAGIAHNK+
Sbjct: 218 ELRYDCSAGIAHNKL 232
>gi|407842286|gb|EKG01044.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 8/135 (5%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR A R++ +L F + VE+ S+DEAY+D+T + SI + ++Q S+
Sbjct: 99 YREASRKIFNILRSFEGVEVEKGSVDEAYLDVTLAAQRELASI-RLPSAQCSSHLEDVMH 157
Query: 60 PDNNDEDARKAGVMEWL---GQVYSDT-DTSLM--ENTEDFQELAIAGVIVEEIRAAVLS 113
P+ N R+A + WL G+ +++ DT+L + E L A +V ++R +
Sbjct: 158 PETNVIPDRRAEIDAWLFEKGKEFNEIFDTALHPHDTVEHQLLLGAASRVVWKLREKIYQ 217
Query: 114 KTQFHCSAGIAHNKV 128
+ + CSAGIAHNK+
Sbjct: 218 ELCYDCSAGIAHNKI 232
>gi|340056782|emb|CCC51120.1| putative DNA polymerase eta [Trypanosoma vivax Y486]
Length = 513
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 53/141 (37%), Positives = 74/141 (52%), Gaps = 20/141 (14%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVV-HERMKSIGHIAASQLS------- 51
YR A RE+ VL F + VERASIDEAY+D+T+ HE + + L
Sbjct: 99 YREASREIFRVLGSFEGVCVERASIDEAYLDVTEAAKHELEEMAAQRRGASLRWEDVVEP 158
Query: 52 NTFVVGFGPDNNDE-DARKAGVMEWLGQVYSDT-DTSLMEN-TEDFQEL-AIAGVIVEEI 107
+T V+ PD DE DA E G+ +S+ D SL TE+ + L + A +V+ I
Sbjct: 159 STIVI---PDRQDEIDAW----FEERGRAFSEVFDVSLHPGATEEGKVLLSAASRVVQRI 211
Query: 108 RAAVLSKTQFHCSAGIAHNKV 128
R + ++ CSAGIAHNK+
Sbjct: 212 RQKLYDDLRYECSAGIAHNKL 232
>gi|2660675|gb|AAC79146.1| similar to DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|9758378|dbj|BAB08827.1| DNA-damage-inducible protein P [Arabidopsis thaliana]
Length = 689
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 26/143 (18%)
Query: 1 YRNAGREV------------IAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAAS 48
YR+AG EV +++L++ S ERASIDE Y+DLTD E M + +
Sbjct: 97 YRSAGSEVDGSGSYYYTVCVVSILAK-SGKCERASIDEVYLDLTDAA-ESMLADAPPESL 154
Query: 49 QLSNTFVVG---FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVE 105
+L + V+ G + D D K V W+ + +D L L+ +IV
Sbjct: 155 ELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKL---------LSCGIIIVA 205
Query: 106 EIRAAVLSKTQFHCSAGIAHNKV 128
E+R VL +T+F CSAGIAHNK+
Sbjct: 206 ELRKQVLKETEFTCSAGIAHNKM 228
>gi|308480033|ref|XP_003102224.1| CRE-POLH-1 protein [Caenorhabditis remanei]
gi|308262150|gb|EFP06103.1| CRE-POLH-1 protein [Caenorhabditis remanei]
Length = 602
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 20/139 (14%)
Query: 1 YRNAGREVIAVLSEF--SNIVERASIDEAYIDLTDVVHER---MKSIGHI------AASQ 49
YR+A EV VL+ F S IVE+AS+DEA++DL+ ++ M+ G + A SQ
Sbjct: 91 YRDASAEVFRVLNNFDSSIIVEKASVDEAFLDLSAYTAQKLDEMRENGTLEEFVETALSQ 150
Query: 50 LSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRA 109
L +T + G D + D + + Q + +D +L+ L IA VE IR
Sbjct: 151 LPSTHLAN-GQDFAENDHLREQFLSEFIQNSTYSDENLL--------LLIAACTVETIRK 201
Query: 110 AVLSKTQFHCSAGIAHNKV 128
+ +TQF+CSAG+ +NK+
Sbjct: 202 RIRDETQFYCSAGVGNNKM 220
>gi|71656413|ref|XP_816754.1| DNA polymerase eta [Trypanosoma cruzi strain CL Brener]
gi|70881903|gb|EAN94903.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 8/135 (5%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR A R++ +L F + VE+ S+DEAY+D+T + SI + ++Q S+
Sbjct: 99 YREASRKIFNILRSFEGVEVEKGSVDEAYLDVTLAAQRELASI-RLPSAQCSSHLEDVMH 157
Query: 60 PDNNDEDARKAGVMEWL---GQVYSDT-DTSLMENTEDFQELAI--AGVIVEEIRAAVLS 113
P+ N R+A + WL G+ +++ DT+L +L + A +V ++R +
Sbjct: 158 PETNVIPDRRAEIDAWLFEKGKEFNEIFDTALHPQATVEHQLLLGAASRVVWKLREKIYQ 217
Query: 114 KTQFHCSAGIAHNKV 128
+ + CSAGIAHNK+
Sbjct: 218 ELCYDCSAGIAHNKI 232
>gi|342183906|emb|CCC93386.1| putative DNA polymerase eta [Trypanosoma congolense IL3000]
Length = 517
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIG-HIAASQLSNTFVVGF 58
YR A R++ +L EF + VE+ S+DEA++D+T + S G H + +V
Sbjct: 99 YREASRKIFRILDEFDGVDVEKGSVDEAFLDVTRAAQQLQASTGLHPPGGECRLEDIVD- 157
Query: 59 GPDNNDEDARKAGVMEWL---GQVYSDT-DTSL--MENTEDFQELAIAGVIVEEIRAAVL 112
P R+ + WL G+ + D D SL TE LA A +V +IR +
Sbjct: 158 -PLTVIIPNRQEEISAWLKGYGKTFMDVFDPSLHPQSTTESIVLLAAASHVVSKIRQRIY 216
Query: 113 SKTQFHCSAGIAHNKV 128
+ +F CSAGIAHNK+
Sbjct: 217 DELRFDCSAGIAHNKL 232
>gi|213410204|ref|XP_002175872.1| sister chromatid cohesion protein Eso1 [Schizosaccharomyces
japonicus yFS275]
gi|212003919|gb|EEB09579.1| sister chromatid cohesion protein Eso1 [Schizosaccharomyces
japonicus yFS275]
Length = 884
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 72/133 (54%), Gaps = 17/133 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YRN ++++ +LS++S +V++ASIDE+++DLT + +++ + + +G P
Sbjct: 123 YRNESKKILGILSKYSKLVKKASIDESFVDLTAEIKKKL----------IQDYSFLGVPP 172
Query: 61 DNNDEDARKAGVMEW---LGQVYSDTDTSLME--NTEDFQE--LAIAGVIVEEIRAAVLS 113
++ A + W LG+V+ + + L E N D+ E L IV+EIR + +
Sbjct: 173 EDLSLPLPTAPTVLWTEELGRVFGEEEGLLSEAKNGGDWDEVFLHYGARIVKEIRNEIFN 232
Query: 114 KTQFHCSAGIAHN 126
+ CSAGI+ N
Sbjct: 233 TLGYTCSAGISRN 245
>gi|414884038|tpg|DAA60052.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 585
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 21/127 (16%)
Query: 8 VIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI------GHIAASQLSNTFVVGFGPD 61
V+A+L+ ERASIDE Y+DLTD E + G + SN ++G D
Sbjct: 179 VVAILAS-KGKCERASIDEVYLDLTDAAKEMLLQAPPDSPEGIFMEAAKSN--ILGLPAD 235
Query: 62 NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSA 121
++ ++ V WL Q +D L L +IV ++R VL +TQF CSA
Sbjct: 236 ASE---KEKNVRAWLCQSEADYQDKL---------LPCGAIIVAQLRVRVLEETQFTCSA 283
Query: 122 GIAHNKV 128
GIAHNK+
Sbjct: 284 GIAHNKM 290
>gi|414884037|tpg|DAA60051.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 397
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 21/127 (16%)
Query: 8 VIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI------GHIAASQLSNTFVVGFGPD 61
V+A+L+ ERASIDE Y+DLTD E + G + SN ++G D
Sbjct: 179 VVAILAS-KGKCERASIDEVYLDLTDAAKEMLLQAPPDSPEGIFMEAAKSN--ILGLPAD 235
Query: 62 NNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSA 121
++ ++ V WL Q +D L L +IV ++R VL +TQF CSA
Sbjct: 236 ASE---KEKNVRAWLCQSEADYQDKL---------LPCGAIIVAQLRVRVLEETQFTCSA 283
Query: 122 GIAHNKV 128
GIAHNK+
Sbjct: 284 GIAHNKM 290
>gi|71653214|ref|XP_815248.1| DNA polymerase eta [Trypanosoma cruzi strain CL Brener]
gi|70880290|gb|EAN93397.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR A R++ +L F + VE+ S+DEAY+D+T + SI + ++Q S
Sbjct: 99 YREASRKIFNILRSFEGVEVEKGSVDEAYLDVTLAAQRELASI-RLPSAQCSYHLEDVMH 157
Query: 60 PDNNDEDARKAGVMEWL---GQVYSDT-DTSLMENTEDFQELAI--AGVIVEEIRAAVLS 113
P+ N R+A + WL G+ +++ DT+L +L + A +V ++R +
Sbjct: 158 PETNVIPDRRAEIDAWLFEKGKEFNEIFDTALHPQATVEHQLLLGAASRVVWKLREKIYQ 217
Query: 114 KTQFHCSAGIAHNKV 128
+ + CSAGIAHNK+
Sbjct: 218 ELCYDCSAGIAHNKI 232
>gi|358256292|dbj|GAA57760.1| DNA polymerase eta subunit, partial [Clonorchis sinensis]
Length = 326
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI---AASQLSNTFVVG 57
YR+A EV +SE VERASIDEAY+DLT++V ++ I A S +FVV
Sbjct: 46 YRSASAEVFQCISEHFKDVERASIDEAYVDLTELVTSTVQQIDWTKSGAHQPNSESFVV- 104
Query: 58 FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
+ +A G+ L ++ D L E D A+A + ++R +L++T F
Sbjct: 105 -IDSGSALEASANGMCAVLDRL--DWVNYLEERFNDGLRYAVATELTHKLRQTILTRTGF 161
Query: 118 HCSAGIAHNK 127
CSAGIA NK
Sbjct: 162 RCSAGIAPNK 171
>gi|115534089|ref|NP_497480.2| Protein POLH-1 [Caenorhabditis elegans]
gi|84570637|dbj|BAE72703.1| DNA polymerase eta [Caenorhabditis elegans]
gi|373218637|emb|CCD62153.1| Protein POLH-1 [Caenorhabditis elegans]
Length = 584
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 20/139 (14%)
Query: 1 YRNAGREVIAVLSEFSN--IVERASIDEAYIDLTDVVHERMKSIG---------HIAASQ 49
YR+A EV VL+ + + I+E+AS+DEA++DL+ +++++ + A +
Sbjct: 91 YRDASAEVFRVLNNYDSQIIIEKASVDEAFLDLSAYTNQKLQELRENEGLEEFLQAAITY 150
Query: 50 LSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRA 109
L T + +E R+ ++E++ + T+ L L IA V VE+IR
Sbjct: 151 LPTTHLATGEDVKENEHLREDVLLEYIENARNCTENLL---------LLIAAVTVEQIRQ 201
Query: 110 AVLSKTQFHCSAGIAHNKV 128
+ +TQF CSAG+ +NK+
Sbjct: 202 QIHEETQFFCSAGVGNNKM 220
>gi|343415011|emb|CCD20819.1| DNA polymerase eta, putative [Trypanosoma vivax Y486]
Length = 513
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 24/143 (16%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIG-HIAASQL-------S 51
YR A R++ VL F + VE+ASIDEAY+D+T+ ++ + ++L
Sbjct: 99 YREASRKIFDVLGSFEGVRVEKASIDEAYLDVTEAAKYELEEMAAQRRGTRLCWEDVVEP 158
Query: 52 NTFVVGFGPDNNDEDARKAGVMEWL---GQVYSDT-DTSLMENT--EDFQELAIAGVIVE 105
T V+ PD DE + W G+ +S+ D SL + ED L A +V+
Sbjct: 159 TTIVI---PDRQDE------IDSWFEERGRAFSEVFDVSLHPDATEEDKVLLCAASRVVQ 209
Query: 106 EIRAAVLSKTQFHCSAGIAHNKV 128
+IR + ++ CSAGIAHNK+
Sbjct: 210 QIRQKLYDDLRYECSAGIAHNKL 232
>gi|402588248|gb|EJW82181.1| ImpB/MucB/SamB family protein [Wuchereria bancrofti]
Length = 518
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 17/140 (12%)
Query: 1 YRNAGREVIAVLSEFSN--IVERASIDEAYIDLTDVVHERMKSI------GHIAASQLSN 52
YR+A EV VL EF++ IVERAS+DEAY+DL+ +V ++ G A L
Sbjct: 94 YRDASAEVFKVLHEFNSQIIVERASVDEAYLDLSALVEHVFETTDPSIRYGKSDAMDLFP 153
Query: 53 TFVVGFGPDNNDEDARKAGVMEW----LGQVYSDTDTSLMENTEDFQELAIAGVIVEEIR 108
T V G D N+ + +W +G ++S + + +L I +VE+IR
Sbjct: 154 TTHVANGTDVNE-----GKIPDWKYDRIGSLHSFISETCKTKDDYKLKLIIGADLVEQIR 208
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
+ T F+CSAGI +K+
Sbjct: 209 RNIKESTAFNCSAGIGSSKM 228
>gi|118763825|gb|AAI28367.1| Polh protein [Mus musculus]
Length = 556
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 6/61 (9%)
Query: 68 RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
RK G+++WL + SD TS D + L + +IVEE+RAA+ SKT F CSAGI+HNK
Sbjct: 28 RKQGLLQWLDSLQSDDPTS-----PDLR-LTVGAMIVEEMRAAIESKTGFQCSAGISHNK 81
Query: 128 V 128
V
Sbjct: 82 V 82
>gi|224075345|ref|XP_002304597.1| predicted protein [Populus trichocarpa]
gi|222842029|gb|EEE79576.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 20/128 (15%)
Query: 7 EVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLS----NTFVVGFGPDN 62
+V+++L+ ERASIDE Y+DLTD ++ + ++ + ++G
Sbjct: 2 QVVSILARKGR-CERASIDEVYLDLTDSAEAMLRETPPESLESINEESRKSHILGL---- 56
Query: 63 NDEDARKA--GVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
EDA A V +WL + SD N +D + LA +IV E+R VL +TQF CS
Sbjct: 57 KSEDANDAQENVSKWLRR--SDA------NHQD-KLLACGALIVSELRMEVLKETQFTCS 107
Query: 121 AGIAHNKV 128
AGIAHNK+
Sbjct: 108 AGIAHNKM 115
>gi|30694597|ref|NP_851130.1| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|13430742|gb|AAK25993.1|AF360283_1 putative DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|21280927|gb|AAM44927.1| putative DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|332007771|gb|AED95154.1| DNA polymerase eta subunit [Arabidopsis thaliana]
Length = 588
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 14/124 (11%)
Query: 8 VIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVG---FGPDNND 64
V+++L++ S ERASIDE Y+DLTD E M + + +L + V+ G + D
Sbjct: 20 VVSILAK-SGKCERASIDEVYLDLTDAA-ESMLADAPPESLELIDEEVLKSHILGMNRED 77
Query: 65 EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIA 124
D K V W+ + +D L L+ +IV E+R VL +T+F CSAGIA
Sbjct: 78 GDDFKESVRNWICREDADRRDKL---------LSCGIIIVAELRKQVLKETEFTCSAGIA 128
Query: 125 HNKV 128
HNK+
Sbjct: 129 HNKM 132
>gi|312079328|ref|XP_003142126.1| hypothetical protein LOAG_06542 [Loa loa]
gi|307762710|gb|EFO21944.1| hypothetical protein LOAG_06542 [Loa loa]
Length = 545
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 21/142 (14%)
Query: 1 YRNAGREVIAVLSEFSN--IVERASIDEAYIDLTDVVHERMK----SIGHIA--ASQLSN 52
YR+A EV VL EF + +VERAS+DEAY+DL+ +V + S+ ++ A L
Sbjct: 94 YRDASAEVFKVLHEFDSRIVVERASVDEAYLDLSALVQHIFETTNPSVKYMEPNAVDLFP 153
Query: 53 TFVVGFGPDNNDEDA------RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEE 106
T V G D N++ R + ++ + Y D ++ L I ++E+
Sbjct: 154 TTHVADGADLNEDKIPDWKYDRVESLHSFISEAYETQDEYKLK-------LIIGADVIEQ 206
Query: 107 IRAAVLSKTQFHCSAGIAHNKV 128
IR+A+ T F+CSAGI +K+
Sbjct: 207 IRSAIKKNTAFNCSAGIGSSKM 228
>gi|348670497|gb|EGZ10319.1| hypothetical protein PHYSODRAFT_522191 [Phytophthora sojae]
Length = 527
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 39/128 (30%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR A RE+ A+L + I+E+ASIDEA++D+T++ +R+ V F
Sbjct: 103 YRVASREIFAILGSMAPIIEKASIDEAFMDVTEMATQRLAQ-------------TVNFCQ 149
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
D + D ++ L I VI EIR A+ SK + CS
Sbjct: 150 DPANHDTKRL--------------------------LCIGAVISREIRQAIYSKLGYTCS 183
Query: 121 AGIAHNKV 128
G+A NK+
Sbjct: 184 TGVAGNKL 191
>gi|407421058|gb|EKF38800.1| DNA polymerase eta, putative [Trypanosoma cruzi marinkellei]
Length = 521
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR A R++ +L F + VE+ S+DEAY+D+T + SI ++++Q S+
Sbjct: 117 YREASRKIFNILCSFEGVEVEKGSVDEAYLDVTLAAQRELASI-RLSSAQCSSHLEDVMH 175
Query: 60 PDNNDEDARKAGVMEWL---GQVYSDT-DTSLME--NTEDFQELAIAGVIVEEIRAAVLS 113
+ N R+A + W G+ +++ DT+L E L A +V ++R +
Sbjct: 176 HETNVIPDRQADIDAWFFEKGKGFNEVFDTALHPPVTVEHQLLLGAASRVVWKLREKIYQ 235
Query: 114 KTQFHCSAGIAHNKV 128
+ ++ CSAGIAHNK+
Sbjct: 236 ELRYDCSAGIAHNKI 250
>gi|384245783|gb|EIE19275.1| DNA/RNA polymerase, partial [Coccomyxa subellipsoidea C-169]
Length = 454
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +G++V+ +L+ S + ERASIDE Y+D+T+ R+ AAS P
Sbjct: 75 YRASGKQVLNILARLS-VAERASIDECYLDITEEAKRRL------AASSAHPPL-----P 122
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
N E + G W + + LA +V E+RAAV + + CS
Sbjct: 123 INVGEVHGEGGTEAWWHRPVGAWGPGQ-------RLLACGAAVVAELRAAVRRELGYSCS 175
Query: 121 AGIAHNKV 128
AGIAHNK+
Sbjct: 176 AGIAHNKI 183
>gi|297678217|ref|XP_002816976.1| PREDICTED: DNA polymerase eta-like isoform 2 [Pongo abelii]
Length = 191
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDARK 69
GP +E +K
Sbjct: 151 PQGPTTAEETVQK 163
>gi|301093411|ref|XP_002997552.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262110570|gb|EEY68622.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 525
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 39/128 (30%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR A R++ A+L I+E+ASIDEA++D+TD+ ER+ V F
Sbjct: 101 YRIASRDIFAILGSMVPIIEKASIDEAFMDVTDMAKERIAQ-------------TVYFCQ 147
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
D + D ++ L I VI EIR A+ +K + CS
Sbjct: 148 DPANHDTKRL--------------------------LCIGAVISREIRQAIYNKLGYTCS 181
Query: 121 AGIAHNKV 128
GIA NK+
Sbjct: 182 TGIAGNKL 189
>gi|167536588|ref|XP_001749965.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771475|gb|EDQ85140.1| predicted protein [Monosiga brevicollis MX1]
Length = 722
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 50/159 (31%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQL---------- 50
YR A R+++AV+ ++ ERASIDEAY D+T +R A+QL
Sbjct: 85 YRQASRDIMAVMEQYGTF-ERASIDEAYFDVTQEAQQRE---AQTPATQLCRHYADLTLL 140
Query: 51 ---------------------SNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME 89
++T V+G+ PD+ +D G WL + S+ D L
Sbjct: 141 QRGAVELRADLTLEDWLRVAMASTHVMGYAPDDGPDDHLGFG---WLPK--SEEDALLFH 195
Query: 90 NTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
+I EIR V +T + CSAGIAHNK+
Sbjct: 196 ----------GAMIAAEIRFRVFEETGYVCSAGIAHNKL 224
>gi|296236545|ref|XP_002763376.1| PREDICTED: DNA polymerase eta-like [Callithrix jacchus]
Length = 191
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDARK 69
GP +E +K
Sbjct: 151 PQGPTTAEETIQK 163
>gi|296419283|ref|XP_002839244.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635259|emb|CAZ83435.1| unnamed protein product [Tuber melanosporum]
Length = 627
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 20/136 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR ++++++ VE+ASIDE+++DL+ +VHER+ L V+ P
Sbjct: 125 YRIESKKIMSIFRAACLRVEKASIDESFLDLSVMVHERL----------LKRFPVLILPP 174
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE--------LAIAGVIVEEIRAAVL 112
+ND + E L ++ + L+E ED E + +A IVEE+R +V
Sbjct: 175 PHNDPAEKLPLPPEGLEIKWA--RSHLLELAEDCDEQLDWDDVGMGVAAEIVEEVRTSVR 232
Query: 113 SKTQFHCSAGIAHNKV 128
+ + CSAGIA NK+
Sbjct: 233 KELGYTCSAGIAQNKL 248
>gi|297290923|ref|XP_002803805.1| PREDICTED: DNA polymerase eta-like [Macaca mulatta]
Length = 730
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 156 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSSVQERLQKLQGQPISADLLPSTYIEGL 214
Query: 59 --GPDNNDEDARK 69
GP +E +K
Sbjct: 215 PQGPTTAEETVQK 227
>gi|449297801|gb|EMC93818.1| hypothetical protein BAUCODRAFT_36277 [Baudoinia compniacensis UAMH
10762]
Length = 723
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIAVLSEF----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++A++ EF VE+ASIDE ++DL+ VH S L +
Sbjct: 142 YRIQSRKILALIKEFLPADRQKVEKASIDEVFLDLSAHVH-----------SLLLERYPE 190
Query: 57 GFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIR 108
GP D+ + ++W D D+S E E D+ ++ IA IV ++R
Sbjct: 191 LRGPPPYDDPSEPLPRPPTTALDWAADSLVDLDSSQTEEDEPDWDDVCALIASEIVRDVR 250
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AV + + CSAGI+ NK+
Sbjct: 251 KAVFDQLHYTCSAGISKNKM 270
>gi|417396963|gb|JAA45515.1| Putative dna polymerase eta-like isoform 2 [Desmodus rotundus]
Length = 200
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIAASQLSNTFVVGF 58
YR A EV+ V+S F+ ++ERASIDEAY+DLT V ER++ + I+A L T++ G
Sbjct: 92 YREASVEVMEVMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPTTYIEGL 150
Query: 59 GPDNN 63
D
Sbjct: 151 PQDPT 155
>gi|110665656|gb|ABG81474.1| polymerase (DNA directed), eta [Bos taurus]
Length = 222
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR+A EV+ V+S F+ ++ER SIDEAY+DLT V ER++ + + I+A L T + GF
Sbjct: 92 YRDASMEVMEVMSRFA-VMERGSIDEAYLDLTSAVQERLQKLQNQPISADLLPTTCIEGF 150
Query: 59 --GPDNNDEDARKA 70
GP + K
Sbjct: 151 PQGPTTTEGTVEKG 164
>gi|350594084|ref|XP_003483838.1| PREDICTED: DNA polymerase eta-like, partial [Sus scrofa]
Length = 163
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIAASQLSNTFVVGF 58
YR A EV+ V+S F+ ++ERASIDEA++DLT+ V ER++ + ++A L T++ GF
Sbjct: 92 YREASAEVMEVMSRFA-MIERASIDEAFVDLTNAVRERLQKLQGQPVSADLLPTTYIEGF 150
>gi|448089441|ref|XP_004196808.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|448093718|ref|XP_004197839.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|359378230|emb|CCE84489.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|359379261|emb|CCE83458.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
Length = 693
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 20/140 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAAS---QLSNTFVVG 57
YR R++ V+ F VE+AS+DE YIDL +++ER++ I A Q N +
Sbjct: 139 YRRESRKIFKVIKLFCKNVEKASVDEGYIDLGSLIYERLRKIFPEIADCEHQDDNELLPP 198
Query: 58 FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ---------ELAIAGVIVEEIR 108
PD + + V+ G++Y + +T L +DF + + I+ EIR
Sbjct: 199 L-PD------KSSSVIRAYGEIYYNKET-LKLKKKDFPIRLHDWDDACILLGSQILFEIR 250
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
+ F S G+A NKV
Sbjct: 251 WEIFKVLGFTTSGGVARNKV 270
>gi|392574155|gb|EIW67292.1| hypothetical protein TREMEDRAFT_12962, partial [Tremella
mesenterica DSM 1558]
Length = 645
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 25/145 (17%)
Query: 1 YRNAGREVIAVLSEF--SNIVERASIDEAYIDLTDVVHERM-KSIGHIAASQLSNTFVVG 57
YR +++A+ E +E+ASIDEA++DLT V ER+ + +++ V
Sbjct: 111 YRRESLKILAIFKEMVPRGEIEKASIDEAFLDLTTQVLERLLERFPYLSQ-------VPP 163
Query: 58 FGPDNNDEDARKAGVMEWL--GQVY---SDTDTSL-MENTEDFQE---------LAIAGV 102
P+ D A + W G V+ +TD +L +E + QE L I
Sbjct: 164 DAPEGLDSALPTAPPVNWQNSGNVFPIDGETDPALGIEEPDGSQEPEGKWEDWALCIGAE 223
Query: 103 IVEEIRAAVLSKTQFHCSAGIAHNK 127
I+ E+RA V + + CSAGIAHNK
Sbjct: 224 IMSELRAEVYKRLHYTCSAGIAHNK 248
>gi|307168868|gb|EFN61792.1| DNA polymerase eta [Camponotus floridanus]
Length = 764
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 6/63 (9%)
Query: 66 DARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAH 125
+ R G+ W+ SD+ L + Q+LA+AGVIVEEIRA++ +T+F CSAGIA
Sbjct: 104 EERSQGLQTWI----SDSFKELHDTHA--QKLAVAGVIVEEIRASIYKETKFRCSAGIAQ 157
Query: 126 NKV 128
NK+
Sbjct: 158 NKI 160
>gi|150863740|ref|XP_001382310.2| DNA polymerase eta subunit [Scheffersomyces stipitis CBS 6054]
gi|149384996|gb|ABN64281.2| DNA polymerase eta subunit [Scheffersomyces stipitis CBS 6054]
Length = 733
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 24/145 (16%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR R+++ + + ++VE+AS+DE+Y+DL +V++++ S+ + A + ++ P
Sbjct: 141 YRRESRKIVKIFQQHCDLVEKASVDESYLDLGRLVYKKLLSLFPLLAEGQDSDYMPSL-P 199
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMEN------TEDFQE------------LAIAGV 102
D E+ + GV+ + S + +L++N ++ F E + I +
Sbjct: 200 DTLPEELQFRGVV-----IKSTEEENLIQNNTIMSLSQQFPEGPPTIGDWDDVCMLIGSM 254
Query: 103 IVEEIRAAVLSKTQFHCSAGIAHNK 127
IV +IR A+ + + SAGIA NK
Sbjct: 255 IVLDIRKALYDEMGYTTSAGIASNK 279
>gi|326915374|ref|XP_003203993.1| PREDICTED: DNA polymerase eta-like [Meleagris gallopavo]
Length = 554
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 65 EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIA 124
E+ R+ G+ EWL + D N D Q L++ VIVEE+R AV T F CSAGI+
Sbjct: 23 EELRQRGLQEWLASLSFDN-----LNCPDLQ-LSMGAVIVEEMRVAVEKATGFRCSAGIS 76
Query: 125 HNKV 128
HNK+
Sbjct: 77 HNKM 80
>gi|398406126|ref|XP_003854529.1| hypothetical protein MYCGRDRAFT_38315 [Zymoseptoria tritici IPO323]
gi|339474412|gb|EGP89505.1| hypothetical protein MYCGRDRAFT_38315 [Zymoseptoria tritici IPO323]
Length = 678
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 31/144 (21%)
Query: 1 YRNAGREVIAVLSEF----SNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSN 52
YR R+++A++ EF VE+ASIDE ++DL+ VH ER +
Sbjct: 137 YRIESRKILAIIKEFLPADKQRVEKASIDEVFLDLSAHVHFILLERYPELR--------- 187
Query: 53 TFVVGFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIV 104
GP D+ ++W D DTS E + D+ ++ IA IV
Sbjct: 188 ------GPPPYDDPTEPLPRPPTTALDWKADALVDLDTSQSEEDDPDWDDIVMLIASEIV 241
Query: 105 EEIRAAVLSKTQFHCSAGIAHNKV 128
++R A+ + ++ CSAG++ NK+
Sbjct: 242 RDVRKAIWEQLKYTCSAGLSRNKM 265
>gi|211065519|ref|NP_001122409.2| polymerase (DNA directed) iota [Nasonia vitripennis]
Length = 635
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 20/136 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAAS--------QLSN 52
YR +++ +L +F++ VE+ +DE +ID+T VV+E IG+ + S + +
Sbjct: 98 YRRMSAKILELLHQFTSSVEKLGLDENFIDVTSVVNEYTTRIGNNSKSSQHDENTTREES 157
Query: 53 TFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
TFV D D +G+++S + LA+A I ++R+ +L
Sbjct: 158 TFV-----QQEDMDHCMP-----VGKIFSTPEEECPCGCH--TRLAVASSIAMDMRSKIL 205
Query: 113 SKTQFHCSAGIAHNKV 128
++ CSAGIAHNK+
Sbjct: 206 NELGLTCSAGIAHNKL 221
>gi|325190748|emb|CCA25240.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 619
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 29/147 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKS----IGHIAASQLS-NTFV 55
YR+A + VL + I ERA IDEAY+D+T+ E + + + + L+ +T V
Sbjct: 105 YRDASNAIFKVLRRHAVICERAGIDEAYLDVTERATELLANMEVQMHDFCMNALNRDTLV 164
Query: 56 VGFGPDNNDEDARKAGVMEWLGQVYSDTDTS---LMEN-----------TEDFQELAIAG 101
G + +++G++E + TDTS EN TE+ Q L +
Sbjct: 165 YGVC------ERKRSGIIERKCK----TDTSEDECDENETIVTSESFPLTEEEQLLCVGA 214
Query: 102 VIVEEIRAAVLSKTQFHCSAGIAHNKV 128
+I EIR AV ++ + CS GI+ NK+
Sbjct: 215 LISREIREAVYTELGYRCSTGISTNKL 241
>gi|170581390|ref|XP_001895662.1| ImpB/MucB/SamB family protein [Brugia malayi]
gi|158597305|gb|EDP35487.1| ImpB/MucB/SamB family protein [Brugia malayi]
Length = 500
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 49/130 (37%)
Query: 1 YRNAGREVIAVLSEFSN--IVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGF 58
YR+A EV VL EF++ IVERAS+DEAY+DLT +V
Sbjct: 94 YRDASAEVFKVLHEFNSRIIVERASVDEAYLDLTALVE---------------------- 131
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
+Y TD S+ +L I +VE+IR + T F+
Sbjct: 132 -------------------HIYETTDPSIK------LKLIIGADLVEQIRRNIKKSTAFN 166
Query: 119 CSAGIAHNKV 128
CSAGI +K+
Sbjct: 167 CSAGIGSSKM 176
>gi|449282938|gb|EMC89663.1| DNA polymerase iota, partial [Columba livia]
Length = 594
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EF +VER +DE ++D+T++V ER+K + A S++ +
Sbjct: 79 YREMSYKVTELLGEFCPLVERLGLDENFVDVTEMVEERLKQLQQSACSRVCVS------- 131
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L ++T + L + I EE+R AV ++
Sbjct: 132 ----------------GHVYNNQAINL-DDTRHVR-LILGSQIAEELREAVYTRLGLTGC 173
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 174 AGVAANKL 181
>gi|260813031|ref|XP_002601223.1| hypothetical protein BRAFLDRAFT_225416 [Branchiostoma floridae]
gi|229286515|gb|EEN57235.1| hypothetical protein BRAFLDRAFT_225416 [Branchiostoma floridae]
Length = 397
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 32/129 (24%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR + L +FS +VER DE ++D+T+ V R+KS F P
Sbjct: 89 YREMSYRITVTLQKFSPLVERLGFDENFVDVTETVDARLKST---------------FSP 133
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENT-EDFQELAIAGVIVEEIRAAVLSKTQFHC 119
N G ++ + + +E T E + LA I E+R A+ S C
Sbjct: 134 QLN-------------GHIFPEME---IEGTYERHKRLACGSQIAAEMRQALHSDLGITC 177
Query: 120 SAGIAHNKV 128
AGIAHNK+
Sbjct: 178 CAGIAHNKL 186
>gi|156058306|ref|XP_001595076.1| hypothetical protein SS1G_03164 [Sclerotinia sclerotiorum 1980]
gi|154700952|gb|EDO00691.1| hypothetical protein SS1G_03164 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 611
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIAVLSEFS----NIVERASIDEAYIDLTDVVH----ERMKSI-GHIAASQLS 51
YR R ++A + + VE+AS+DE ++DL+ VH ER + G L+
Sbjct: 83 YRLESRRILACIKDCVPNDLQRVEKASVDEVFMDLSSQVHAILLERYPELQGPAPYDDLT 142
Query: 52 NTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQELA--IAGVIVEEIR 108
+ V++W D DT E + D+ ++A I IV +R
Sbjct: 143 EQLPLP-----------PTTVLDWKADALVDLDTDETETDDPDWDDIAMLIGSEIVRTVR 191
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AA+ K ++ CSAGIA NK+
Sbjct: 192 AAIREKLKYTCSAGIAQNKM 211
>gi|367041902|ref|XP_003651331.1| hypothetical protein THITE_2111461 [Thielavia terrestris NRRL 8126]
gi|346998593|gb|AEO64995.1| hypothetical protein THITE_2111461 [Thielavia terrestris NRRL 8126]
Length = 642
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 21/139 (15%)
Query: 1 YRNAGREVIAVLSEF--SNI--VERASIDEAYIDLTDVVHE-RMKSIGHIAASQLSNTFV 55
YR R ++A++ E S++ VE+A IDE ++DL+ VH ++ ++A
Sbjct: 116 YRLESRRILAIIKEHLPSHLQKVEKAGIDEVFLDLSAHVHAVLLERFPELSAPP------ 169
Query: 56 VGFGPDNNDED---ARKAGVMEWLGQVYSDTDTSLME-NTEDFQELA--IAGVIVEEIRA 109
PD N + ++W D D E + D+ ++A +A IV IRA
Sbjct: 170 ----PDGNPSELLPVPPVSALDWQADALVDLDDESAEFDDPDWDDVAFLVASEIVRNIRA 225
Query: 110 AVLSKTQFHCSAGIAHNKV 128
A+ K ++ C+AGIA NK+
Sbjct: 226 AIRDKLRYTCAAGIARNKL 244
>gi|310794025|gb|EFQ29486.1| impB/mucB/samB family protein [Glomerella graminicola M1.001]
Length = 637
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 20/138 (14%)
Query: 1 YRNAGREVIAVLSEF----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R ++ V+ E +E+ASIDE ++DL+ VH SI +L+N
Sbjct: 139 YRLQSRRILGVIKESLPPDIQKIEKASIDEVFLDLSAQVH----SILLERFPELANP--- 191
Query: 57 GFGP--DNNDEDARKAGV--MEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAA 110
P D+ ED + V ++W D D D+ ++AI IV +R
Sbjct: 192 ---PPYDDPTEDLPRPSVAALDWQADALVDLDEEQESVDPDWDDVAILIGSEIVRHVRGQ 248
Query: 111 VLSKTQFHCSAGIAHNKV 128
+L + Q+ CSAGIA NK+
Sbjct: 249 ILERLQYTCSAGIAKNKL 266
>gi|367021894|ref|XP_003660232.1| hypothetical protein MYCTH_2298274 [Myceliophthora thermophila ATCC
42464]
gi|347007499|gb|AEO54987.1| hypothetical protein MYCTH_2298274 [Myceliophthora thermophila ATCC
42464]
Length = 577
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 27/142 (19%)
Query: 1 YRNAGREVIAVLSEF--SNI--VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R++ AV+ E SN+ VE+A IDE ++DL+ H+ A L +
Sbjct: 49 YRLESRKIFAVIKEILPSNLQKVEKAGIDEMFLDLS----------AHVHALLLERFPEL 98
Query: 57 GFGPDNNDEDAR----KAGVMEWLGQVYSDTDTSLMENTE----DFQELA--IAGVIVEE 106
GP D ++W D D EN E D+ ++A +A +V
Sbjct: 99 ASGPPKGDPSEPLPMPPISALDWQADALVDLDD---ENAELEDPDWDDVAFCVASEVVRN 155
Query: 107 IRAAVLSKTQFHCSAGIAHNKV 128
+RAA+ K ++ C+AGIA NK+
Sbjct: 156 VRAAIRDKLRYTCAAGIARNKL 177
>gi|401421627|ref|XP_003875302.1| putative DNA polymerase eta [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491539|emb|CBZ26810.1| putative DNA polymerase eta [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 772
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR+A R+V ++L+ I VE+ SIDEAYID+T+ + + AA +
Sbjct: 114 YRHASRQVFSILAATPGIQVEKGSIDEAYIDVTEAARRELAEVRAAAAGASLDPLADVME 173
Query: 60 PDNNDEDARKAGVMEWLG-------QVYSDTDTSL--------MENTEDF---------- 94
P + R+A + W G V+ + +L +E + F
Sbjct: 174 PSTRLIEDRRAEMEAWFGARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGADDAAYA 233
Query: 95 ---QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
L A +V +R + ++ + CSAGIAHN+V
Sbjct: 234 ERCLLLCAASRVVHRLRQRIYAELHYDCSAGIAHNRV 270
>gi|440471150|gb|ELQ40183.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae Y34]
Length = 679
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIAVLSE----FSNIVERASIDEAYIDLTDVVHERM-KSIGHIAASQLSNTFV 55
YR R ++A++ E VE+ASIDE +IDL+ VH ++ + +A+
Sbjct: 157 YRLQSRTILALIKECLPPHQCKVEKASIDEVFIDLSANVHSKLIERFPELASP------- 209
Query: 56 VGFGPDNNDEDAR----KAGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIR 108
P D AR ++W + D + E + D+ ++A IA I +IR
Sbjct: 210 ----PPGADAQARLPLPPVSALDWQADALIELDETETETDDPDWDDIALLIASEITRDIR 265
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
+ ++ ++ CSAG+A NK+
Sbjct: 266 QTIFTRLKYTCSAGVAGNKL 285
>gi|389646325|ref|XP_003720794.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae 70-15]
gi|86196643|gb|EAQ71281.1| hypothetical protein MGCH7_ch7g688 [Magnaporthe oryzae 70-15]
gi|351638186|gb|EHA46051.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae 70-15]
gi|440479415|gb|ELQ60186.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae P131]
Length = 668
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIAVLSE----FSNIVERASIDEAYIDLTDVVHERM-KSIGHIAASQLSNTFV 55
YR R ++A++ E VE+ASIDE +IDL+ VH ++ + +A+
Sbjct: 146 YRLQSRTILALIKECLPPHQCKVEKASIDEVFIDLSANVHSKLIERFPELASP------- 198
Query: 56 VGFGPDNNDEDAR----KAGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIR 108
P D AR ++W + D + E + D+ ++A IA I +IR
Sbjct: 199 ----PPGADAQARLPLPPVSALDWQADALIELDETETETDDPDWDDIALLIASEITRDIR 254
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
+ ++ ++ CSAG+A NK+
Sbjct: 255 QTIFTRLKYTCSAGVAGNKL 274
>gi|303282517|ref|XP_003060550.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458021|gb|EEH55319.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 681
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 23/127 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR A ++ VL+ VE+ASIDEAY+D+T V E I + L++ G
Sbjct: 167 YRAASASIMRVLASACPRVEKASIDEAYLDVTAEVDE----ITRVGGDALTSAIERGVA- 221
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
++GV+E + SD D + LA+ + ++R AV K + S
Sbjct: 222 --------ESGVVEPPDVLASDVD----------RRLAVGASVCADVRRAVFEKLGYTVS 263
Query: 121 AGIAHNK 127
G+AHNK
Sbjct: 264 GGVAHNK 270
>gi|350400596|ref|XP_003485892.1| PREDICTED: DNA polymerase iota-like [Bombus impatiens]
Length = 565
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR+ +V+ +L +F+ +VER +D+ ++D+T +V + M S N +
Sbjct: 88 YRHYSAKVLEILHQFTPLVERLGLDDNFMDVTSIVQKYMNS---------GNNSELNLSI 138
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+ DE+ +G+V+ ++ L IA I EIR + CS
Sbjct: 139 NMEDENP--------VGKVFGTSEEECPCGCH--ARLIIASKIAAEIRKRIYKDLHITCS 188
Query: 121 AGIAHNKV 128
AGIAHNK+
Sbjct: 189 AGIAHNKL 196
>gi|452822562|gb|EME29580.1| DNA polymerase eta subunit [Galdieria sulphuraria]
Length = 546
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 26/135 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE-------RMKSIGHIAASQLSNT 53
YR A ++ +L +S + E+ASIDEAY+D+++ V + + SIG I QLS T
Sbjct: 121 YREASAKIFQLLFSYSELCEKASIDEAYLDVSEQVQDILVATRNQRSSIGSI-FEQLSMT 179
Query: 54 FVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 113
+ +A E + Q + + L Q L+I I +IR A+ S
Sbjct: 180 ------------EKERAYYFETIFQPFGKRELPLS------QILSIGCAIAAKIRYAIYS 221
Query: 114 KTQFHCSAGIAHNKV 128
+ + SAGIA NK+
Sbjct: 222 QFNYTSSAGIAENKL 236
>gi|380490518|emb|CCF35959.1| impB/mucB/samB family protein [Colletotrichum higginsianum]
Length = 640
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 20/138 (14%)
Query: 1 YRNAGREVIAVLSE--FSNI--VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++AV+ E S++ VE+ASIDE ++DL+ VHE I +L+N
Sbjct: 139 YRLECRKILAVIKESLPSDLQKVEKASIDEVFLDLSAQVHE----ILLRRFPELANP--- 191
Query: 57 GFGPDNNDEDARKAG----VMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAA 110
P +D G ++W D + D+ ++AI IV +R
Sbjct: 192 ---PPYDDPTENLPGPSVAALDWQADALVDLNEEEESMDPDWDDVAILIGSEIVRHVRGQ 248
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ + Q+ CSAGIA NK+
Sbjct: 249 IFERLQYTCSAGIAKNKL 266
>gi|389601156|ref|XP_001564778.2| putative DNA polymerase eta [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322504922|emb|CAM38849.2| putative DNA polymerase eta [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 757
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 29/157 (18%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR+A R++ +L+E + VE+A +DEAY+D+T+ + + AA + V
Sbjct: 114 YRHASRQIFGILAEAPGVQVEKAGLDEAYVDVTEAARRELAEVRAAAAGASLDPLVDVME 173
Query: 60 PDNNDEDARKAGVMEW-------LGQVYSDTDTSL--------MENTEDF---------- 94
P + R+A + W L V+ + +L +E + F
Sbjct: 174 PSTRLIEDRRAEMEAWLCARGTSLAAVFDEPMRALVRGECGAGLEGSRAFCVGADDPAYA 233
Query: 95 ---QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
L A +V +R + ++ + CSAGIAHN+V
Sbjct: 234 ERCLLLCAASRVVHRLRQRIYAELHYDCSAGIAHNRV 270
>gi|432872403|ref|XP_004072098.1| PREDICTED: DNA polymerase iota-like [Oryzias latipes]
Length = 680
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 27/128 (21%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR A +V +LS F +VER DE ++D+T++V RMK S
Sbjct: 115 YREASHQVTELLSSFCPLVERLGFDENFMDVTEMVERRMKETPPPEGYSFS--------- 165
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY+ ++ + + D LA+ I E+R AV S+
Sbjct: 166 ----------------GHVYNPSNAEI--SGSDHPRLALGSYIAAELRDAVHSRLGLTGC 207
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 208 AGVATNKL 215
>gi|340714323|ref|XP_003395679.1| PREDICTED: DNA polymerase iota-like isoform 1 [Bombus terrestris]
gi|340714325|ref|XP_003395680.1| PREDICTED: DNA polymerase iota-like isoform 2 [Bombus terrestris]
Length = 575
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR+ +V+ +L +F+ +VER +D+ ++D+T +V + M S N +
Sbjct: 98 YRHYSAKVLEILHQFTPLVERLGLDDNFMDVTSIVQKYMNS---------GNNSELNLSI 148
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+ DE+ +G+V+ ++ L IA I EIR + CS
Sbjct: 149 NMEDENP--------VGKVFGPSEEECPCGCH--ARLIIASKIAAEIRERIYKDLHITCS 198
Query: 121 AGIAHNKV 128
AGIAHNK+
Sbjct: 199 AGIAHNKL 206
>gi|116193781|ref|XP_001222703.1| hypothetical protein CHGG_06608 [Chaetomium globosum CBS 148.51]
gi|88182521|gb|EAQ89989.1| hypothetical protein CHGG_06608 [Chaetomium globosum CBS 148.51]
Length = 661
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 21/139 (15%)
Query: 1 YRNAGREVIAVLSEF--SNI--VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R ++AV+ E S++ VE+A IDE ++DL+ H+ A L +
Sbjct: 131 YRLESRRILAVIKEHLPSHLQKVEKAGIDEVFLDLS----------AHVHAVLLERFPEL 180
Query: 57 GFGPDNNDE----DARKAGVMEWLGQVYSDTDTSLME-NTEDFQELA--IAGVIVEEIRA 109
GP + D ++W D D E + D+ ++A +A IV IR
Sbjct: 181 AGGPPDGDPFEHLPMPPVSALDWKADALIDLDEERAEFDDPDWDDVAFLVASEIVRNIRV 240
Query: 110 AVLSKTQFHCSAGIAHNKV 128
A+ K ++ C+AGIA NK+
Sbjct: 241 AIRDKLRYTCAAGIAKNKL 259
>gi|429862856|gb|ELA37463.1| sister chromatid cohesion protein eso1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 656
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 24/140 (17%)
Query: 1 YRNAGREVIAVLSEFS----NIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSN 52
YR R+++AV+ E VE+ASIDE ++DL+ VH ER +G+
Sbjct: 139 YRLQSRKILAVIKESLPQDLQKVEKASIDEVFLDLSAQVHSVLLERFPELGNPPPY---- 194
Query: 53 TFVVGFGPDNNDEDARKAGV--MEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIR 108
D+ E+ V ++W D + D+ ++AI IV ++R
Sbjct: 195 --------DDPTENLPSPPVSALDWQADALIDLNEEEESMDPDWDDVAILIGSEIVRDVR 246
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
VL K + CSAG+A NK+
Sbjct: 247 RQVLEKLFYTCSAGVAKNKL 266
>gi|260783390|ref|XP_002586758.1| hypothetical protein BRAFLDRAFT_134446 [Branchiostoma floridae]
gi|229271883|gb|EEN42769.1| hypothetical protein BRAFLDRAFT_134446 [Branchiostoma floridae]
Length = 488
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 32/122 (26%)
Query: 7 EVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDED 66
+V L +FS +VER DE ++D+T+ V R+KS F P N
Sbjct: 80 QVTNTLQKFSPLVERLGFDENFVDVTETVEARVKS---------------AFSPQLN--- 121
Query: 67 ARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHN 126
G ++ + + E + LA I EIR A+ S C AGIAHN
Sbjct: 122 ----------GHIFPEIEIE----DERHKRLACGSQIAAEIREALHSDLGITCCAGIAHN 167
Query: 127 KV 128
K+
Sbjct: 168 KL 169
>gi|358060048|dbj|GAA94107.1| hypothetical protein E5Q_00754 [Mixia osmundae IAM 14324]
Length = 628
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 20/137 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR ++++ + + ++E+ASIDEA++D T V + M L ++ P
Sbjct: 135 YRRESQKILKIFGDLCPLIEKASIDEAFLDFTAPVRQLM----------LERYPILAQPP 184
Query: 61 DNNDE-DARKAGVMEW--LGQVYSDTDTSLMENTED----FQELAIA--GVIVEEIRAAV 111
DN DE + W LG + D T+D +Q++A+A ++E+ R V
Sbjct: 185 DNLDEPLPPPPTTLPWSELGNLIP-VDPDAPPETDDEPITWQDVALALGAEMMEKCRKEV 243
Query: 112 LSKTQFHCSAGIAHNKV 128
++ + CSAGIA NK+
Sbjct: 244 YTQLGYTCSAGIAKNKM 260
>gi|255085274|ref|XP_002505068.1| predicted protein [Micromonas sp. RCC299]
gi|226520337|gb|ACO66326.1| predicted protein [Micromonas sp. RCC299]
Length = 236
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR A V++ L++ VERASIDEAY+D+T V + + G
Sbjct: 86 YRRASWRVMSALADRCEHVERASIDEAYVDVTREV----------------DAAIDGRTN 129
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
DE R + G V T ++ +E LAI I IRAAVL +T F S
Sbjct: 130 AEIDEMVRDG--VNASGAVVPLTPST----SEHDMRLAIGAHICAGIRAAVLHQTGFTMS 183
Query: 121 AGIAHNKV 128
G+AHNK+
Sbjct: 184 GGVAHNKM 191
>gi|425772364|gb|EKV10771.1| Sister chromatid cohesion protein (Eso1), putative [Penicillium
digitatum PHI26]
gi|425774774|gb|EKV13074.1| Sister chromatid cohesion protein (Eso1), putative [Penicillium
digitatum Pd1]
Length = 646
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 14 EFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDED--ARKAG 71
E S +VE+ASIDE +IDL+ +++ A Q +G +N D +
Sbjct: 166 ELSAVVEKASIDEVFIDLSPLIYR--------ALLQRYPELRMGIPNENRDAELPVPPTT 217
Query: 72 VMEWLGQVYSDTDT-SLMENTEDFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
++W D D E+ D+ + + I IV +R+AV K + CSAG+ NK+
Sbjct: 218 ALQWNTDCLVDLDKHETEEDDPDWDDVVMLIGSEIVRSVRSAVWEKLSYTCSAGLGRNKM 277
>gi|389601154|ref|XP_001564777.2| putative DNA polymerase eta [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322504921|emb|CAM38848.2| putative DNA polymerase eta [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 758
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 29/157 (18%)
Query: 1 YRNAGREVIAVL-SEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR+A R++ A+L SE +V +A IDEAY+D+T+ + + AA + V
Sbjct: 100 YRHASRQIFAILRSEPGVMVGKAGIDEAYVDVTEAARRELAEVRAAAAGASLDPLVDVME 159
Query: 60 PDNNDEDARKAGVMEW-------LGQVYSDTDTSL--------MENTEDF---------- 94
P + R+A + W L V+ + +L +E + F
Sbjct: 160 PSTRLIEDRRAEMEAWLCARGTSLAAVFDEPMRALVRGECGAGLEGSRAFCVGADDPAYA 219
Query: 95 ---QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
L A +V +R + ++ + CSAGIAHN+V
Sbjct: 220 ERCLLLCAASRVVHRLRQRIYAELHYDCSAGIAHNRV 256
>gi|384246648|gb|EIE20137.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
Length = 772
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 1 YRNAGREVIAVLSEFS--NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGF 58
YR A E++AVL + + ++E+ASIDE Y+D+T +V ++ + + + T G
Sbjct: 73 YRKACIEILAVLHKAAPQAVIEKASIDEVYMDVTTMVERELRERAQADSCREAET---GE 129
Query: 59 GPDNNDE-DARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
G ++ E W G V + E + L+I I +R AV + F
Sbjct: 130 GGAHDWEAGGSPVDAFSWGGIVLGGGPLDVGSEFE--RRLSIGANIACRLRGAVRDQLGF 187
Query: 118 HCSAGIAHNKV 128
CSAGIA NK+
Sbjct: 188 TCSAGIAANKL 198
>gi|322709529|gb|EFZ01105.1| sister chromatid cohesion protein Eso1 [Metarhizium anisopliae
ARSEF 23]
Length = 651
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 30/143 (20%)
Query: 1 YRNAGREVIAVLSEF--SNI--VERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSN 52
YR R+++A++ + N+ VE+ASIDE ++DL+ VH ER +LSN
Sbjct: 139 YRLESRKILALIRDTLPPNLQKVEKASIDEVFLDLSAHVHTILLERF--------PELSN 190
Query: 53 TFVVGFGPDNNDEDARKAGV-----MEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVE 105
P D+ A + + ++W D D D+ ++AI IV
Sbjct: 191 -------PPPYDDLAERLPLPSIAALDWKADALVDLDEDQESQDPDWDDVAILIGSEIVR 243
Query: 106 EIRAAVLSKTQFHCSAGIAHNKV 128
+RA V + + CSAGIA+NK+
Sbjct: 244 NVRAQVRGRLGYTCSAGIANNKM 266
>gi|91086917|ref|XP_971585.1| PREDICTED: similar to DNA polymerase iota [Tribolium castaneum]
gi|270009670|gb|EFA06118.1| hypothetical protein TcasGA2_TC008961 [Tribolium castaneum]
Length = 537
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 32/129 (24%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L +++ +VER +DE Y+D+T +++E++
Sbjct: 83 YRQTSYKVTNLLQKYTPLVERLGLDENYLDVTTLINEKL--------------------- 121
Query: 61 DNNDEDARKAGVMEWLGQVYSDT-DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHC 119
N D ++ +G V+ DT D TE L IA + +EIR + S+
Sbjct: 122 -NQKSD------LKLVGNVFGDTSDKCECGCTE---RLIIATTVAQEIRDVIKSELNLTS 171
Query: 120 SAGIAHNKV 128
AGIAHNK+
Sbjct: 172 CAGIAHNKL 180
>gi|347837334|emb|CCD51906.1| similar to transcription factor Zn, C2H2 [Botryotinia fuckeliana]
Length = 668
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIAV----LSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR + ++A L + IVE+AS+DE ++DL+ +H + L +
Sbjct: 141 YRLESKRILACIKDCLPKHLQIVEKASVDEVFMDLSAQIH-----------ATLLERYPE 189
Query: 57 GFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIR 108
GP D+ + ++W D D + E + D+ ++A I IV +R
Sbjct: 190 LKGPAPYDDLTEQLPLPPTTFLDWKADALVDLDKNEAETDDPDWDDIAMLIGSEIVRTVR 249
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AA+ K ++ CSAG+A NK+
Sbjct: 250 AAIREKLKYTCSAGVAQNKM 269
>gi|322783253|gb|EFZ10839.1| hypothetical protein SINV_80489 [Solenopsis invicta]
Length = 577
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YRN ++ +L +F+ +VER D+ ++D+T +V +++KS +SN+ +
Sbjct: 88 YRNYSTKITEILHQFTPLVERLGFDDNFLDVTSIVEKQLKSQNDTELD-MSNSSI----- 141
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
ED ++ V + G + + L I I EIR + + CS
Sbjct: 142 --EFEDLKE--VSKIFGPLEEECPCGC------HTRLMIGSKIAAEIRNRIYEELHLTCS 191
Query: 121 AGIAHNKV 128
AGIAHNK+
Sbjct: 192 AGIAHNKL 199
>gi|403337853|gb|EJY68151.1| DNA polymerase eta [Oxytricha trifallax]
Length = 606
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 22/130 (16%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +++ ++ +S +VE+AS DEAY+D+T+ V+ + + + N F P
Sbjct: 171 YREESKKIFGIVQRYSQLVEKASCDEAYVDVTNQVNLKYQ-------QEHDNIF-----P 218
Query: 61 DNNDEDARKAGVMEWLGQV---YSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
N +A W Y + + TE ++L IA I IR + + Q+
Sbjct: 219 KNYTTEA-------WCNSYFMSYPKGEGLFIPETEYEKKLFIANQIAYSIRQDIKRELQY 271
Query: 118 HCSAGIAHNK 127
+ S GI+HNK
Sbjct: 272 NASCGISHNK 281
>gi|146085845|ref|XP_001465373.1| putative DNA polymerase eta [Leishmania infantum JPCM5]
gi|134069471|emb|CAM67794.1| putative DNA polymerase eta [Leishmania infantum JPCM5]
Length = 786
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 29/157 (18%)
Query: 1 YRNAGREVIAVL-SEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR+A R++ A+L +E +V +A IDEAY+D+T+ + + + AA +
Sbjct: 132 YRHASRQIFAILRAEPGVVVGKAGIDEAYVDVTEAARQELAEVRAAAAGASLDPLADVME 191
Query: 60 PDNNDEDARKAGVMEW-------LGQVYSDTDTSL--------MENTEDF---------- 94
P + R+A + W L V+ + +L +E + F
Sbjct: 192 PSTRLIEDRRAEMEAWFSARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGVDDAAYA 251
Query: 95 ---QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
L A +V +R + ++ + CSAGIAHN+V
Sbjct: 252 ERCLLLCAASRVVHRLRQRIYAELHYDCSAGIAHNRV 288
>gi|146085849|ref|XP_001465374.1| putative DNA polymerase eta [Leishmania infantum JPCM5]
gi|134069472|emb|CAM67795.1| putative DNA polymerase eta [Leishmania infantum JPCM5]
Length = 760
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 29/157 (18%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR+A R+V ++L+ + VE+ S+DEAY+D+T+ + + + AA +
Sbjct: 112 YRHASRQVFSILAATPGVQVEKGSVDEAYVDVTEAARQELAEVRAAAAGASLDPLADVME 171
Query: 60 PDNNDEDARKAGVMEW-------LGQVYSDTDTSL--------MENTEDF---------- 94
P + R+A + W L V+ + +L +E + F
Sbjct: 172 PSTRLIEDRRAEMEAWFSARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGVDDAAYA 231
Query: 95 ---QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
L A +V +R + ++ + CSAGIAHN+V
Sbjct: 232 ERCLLLCAASRVVHRLRQRIYAELHYDCSAGIAHNRV 268
>gi|401430181|ref|XP_003886498.1| unnamed protein product [Leishmania mexicana MHOM/GT/2001/U1103]
gi|356491265|emb|CBZ41029.1| unnamed protein product [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 619
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 1 YRNAGREVIAVL-SEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR+A R++ A+L +E +V +A IDEAYID+T+ + + AA +
Sbjct: 100 YRHASRQIFAILRAEPGVVVGKAGIDEAYIDVTEAARRELAEVRAAAAGASLDPLADVME 159
Query: 60 PDNNDEDARKAGVMEWLG-------QVYSDTDTSL--------MENTEDFQ--------- 95
P + R+A + W G V+ + +L +E + F
Sbjct: 160 PSTRLIEDRRAEMEAWFGARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGADDAAYA 219
Query: 96 ----ELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
L A +V +R + ++ + CSAGIAHN+V
Sbjct: 220 ERCLLLCAASRVVHRLRQRIYAELHYDCSAGIAHNRV 256
>gi|322696817|gb|EFY88604.1| sister chromatid cohesion protein Eso1 [Metarhizium acridum CQMa
102]
Length = 585
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 30/143 (20%)
Query: 1 YRNAGREVIAVLSEF--SNI--VERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSN 52
YR R+++A++ + N+ VE+ASIDE ++DL+ VH ER +LSN
Sbjct: 75 YRLESRKILALIRDTLPPNLQKVEKASIDEVFLDLSAHVHTILLERF--------PELSN 126
Query: 53 TFVVGFGPDNNDEDARKAGV-----MEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVE 105
P D+ A + + ++W D D D+ ++AI IV
Sbjct: 127 -------PPPYDDLAERLPLPSIAALDWKADALVDLDEDQESQDPDWDDVAILIGSEIVR 179
Query: 106 EIRAAVLSKTQFHCSAGIAHNKV 128
+RA V + + CSAGIA+NK+
Sbjct: 180 NVRAQVHGRLGYTCSAGIANNKM 202
>gi|50547727|ref|XP_501333.1| YALI0C01573p [Yarrowia lipolytica]
gi|49647200|emb|CAG81630.1| YALI0C01573p [Yarrowia lipolytica CLIB122]
Length = 640
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 17/138 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDL-TDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR AG++V+ ++ ++S++VE+AS+DE+Y+DL + +E M + + QL + + F
Sbjct: 120 YRQAGKKVLNIVKQYSSVVEKASVDESYLDLGPRIFNEIMIAFPQL---QLLDNDLDNFL 176
Query: 60 PDNNDEDARKA--------GVMEWLGQVYS-DTDTSLMENT--EDFQELAI--AGVIVEE 106
P K GV+E + V D D + ++T D+ +L + I +
Sbjct: 177 PAPPRAHELKIRGYNWDGLGVLEIVTDVSRFDPDIRVHDDTMVTDWDDLVLMFGARISKR 236
Query: 107 IRAAVLSKTQFHCSAGIA 124
+R V + ++ CSAGIA
Sbjct: 237 MREQVYEELKYTCSAGIA 254
>gi|357616687|gb|EHJ70343.1| DNA polymerase IV [Danaus plexippus]
Length = 569
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 28/128 (21%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR A ++ VL F VE+ +DE +ID+T++V ER+K++ ++ + +S
Sbjct: 59 YRAASNKIFTVLQTFKCPVEKLGMDENFIDVTNIVQERIKNV-NLKSITVS--------- 108
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G +Y++++ + L +A I E+R + + F
Sbjct: 109 ----------------GHLYTESNAECVCGCH--ARLKVASQIASEMRHKIYDELGFTTC 150
Query: 121 AGIAHNKV 128
AGIAHNK+
Sbjct: 151 AGIAHNKL 158
>gi|344269856|ref|XP_003406763.1| PREDICTED: DNA polymerase iota [Loxodonta africana]
Length = 713
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V ++ EFS +VER DE ++D+T+++ +R++ + S ++ +
Sbjct: 107 YRETSYKVTELMEEFSPLVERLGFDENFVDITELIEKRLQQLQSEEHSSVTVS------- 159
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY+D +L + + L + I EIR A+ +K
Sbjct: 160 ----------------GHVYNDQSINLHDISH--IRLLVGSQIAAEIREAIYNKLGLTGC 201
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 202 AGVASNKL 209
>gi|312378180|gb|EFR24822.1| hypothetical protein AND_10339 [Anopheles darlingi]
Length = 825
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
Y+ + + ++ F+ VE+ +DE Y+D+T++ ER++ + S +SN
Sbjct: 160 YKAMSQRINEIMHRFTPHVEKLGLDENYLDVTELTAERLEQLD--GESSISNA------- 210
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGV---------IVEEIRAAV 111
N + R G++ + D S + E F+ + G I +EIR +
Sbjct: 211 --NVQTERVVGLIHPPPE---DRQRSEYSDRELFRSCCLCGCDRRLILATHIAQEIRECI 265
Query: 112 LSKTQFHCSAGIAHNKV 128
+ C AGIAHNK+
Sbjct: 266 FRELGLRCCAGIAHNKL 282
>gi|380025132|ref|XP_003696333.1| PREDICTED: DNA polymerase iota-like [Apis florea]
Length = 566
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR+ +++ +L +F+ +VER D+ ++D+T +V + M S N +
Sbjct: 88 YRHFSAKILEILHQFTPLVERLGFDDNFMDVTSIVQKYMNS---------GNNSELNINI 138
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
DE+ +G+++ ++ L IA I EIR + CS
Sbjct: 139 SMEDENP--------VGEIFGTSEEECPCGCH--ARLIIASKIAAEIRERIYKDLHVTCS 188
Query: 121 AGIAHNKV 128
AGIAHNK+
Sbjct: 189 AGIAHNKL 196
>gi|145352281|ref|XP_001420480.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580714|gb|ABO98773.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 534
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR AGREV AVL+ +ERASIDEAY+DLT+ + ++ + + T
Sbjct: 127 YREAGREVAAVLAR-GGTIERASIDEAYLDLTESAKKVLEETAWATILEKART------- 178
Query: 61 DNNDEDARKAGVMEWLGQVYSDT---DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
+ AG G+ Y+ + E E+ + LA I +R A + + +
Sbjct: 179 ------SHAAGASAVSGKGYASVAWWNRDESEWREEEKLLAAGAYICFNLRKACVDELGY 232
Query: 118 HCSAGIAHNKV 128
SAGIA NK+
Sbjct: 233 TLSAGIALNKM 243
>gi|358393445|gb|EHK42846.1| hypothetical protein TRIATDRAFT_33108 [Trichoderma atroviride IMI
206040]
Length = 662
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 1 YRNAGREVIAVLSEFS----NIVERASIDEAYIDLTDVVH-ERMKSIGHIAASQLSNTFV 55
YR R+++A + E VE+ASIDE ++DL+ +H E ++ +++ S
Sbjct: 137 YRLQSRKILATIKESLPRDLQKVEKASIDEVFLDLSAQIHAELLRRFPELSSPPPS---- 192
Query: 56 VGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAAVLS 113
G + A +EW D + D+ ++AI IV +RA V
Sbjct: 193 ---GDVSEPLPFPSAAALEWQNDNLIDLEEDEEAVDPDWDDVAILIGSEIVRRVRAQVRE 249
Query: 114 KTQFHCSAGIAHNKV 128
K + CSAGIA+NK+
Sbjct: 250 KLGYTCSAGIANNKL 264
>gi|296222687|ref|XP_002757293.1| PREDICTED: DNA polymerase iota isoform 1 [Callithrix jacchus]
Length = 738
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 125 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTV----- 176
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
LG VY++ +L + L + I E+R A+ ++
Sbjct: 177 ---------------LGHVYNNQSINLHDILH--IRLLVGSQIAAEMREAMYNRLGLTGC 219
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 220 AGVASNKL 227
>gi|403215041|emb|CCK69541.1| hypothetical protein KNAG_0C04390 [Kazachstania naganishii CBS
8797]
Length = 630
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 23/143 (16%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH-------IAASQLSNT 53
YR R+++ + EF ++VE+AS+DE ++DL + +R+ + + ++L +
Sbjct: 131 YRRESRKILKIFKEFCDVVEKASVDEVFLDLGRICFQRLMELDSSEREPAVMNFNELKDL 190
Query: 54 FVVGFGPDNNDEDARKAGVMEWL------GQVYSDTDTSLMENTEDFQELA--IAGVIVE 105
FV G D D++ + E L G V+ + + SL D+ ++ +A V
Sbjct: 191 FVRG----KYDLDSKLPSIPEELKSLKFHGFVFQEENASLT----DWDDVIFWLASKYVL 242
Query: 106 EIRAAVLSKTQFHCSAGIAHNKV 128
EIR + + S G+A K+
Sbjct: 243 EIRTCIQDTLGYSTSCGVARTKM 265
>gi|328780415|ref|XP_003249798.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase iota [Apis
mellifera]
Length = 564
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR+ +++ +L +F+ +VER D+ ++D+T +V + M S N +
Sbjct: 88 YRHFSTKILEILHQFTPLVERLGFDDNFMDVTSIVQKYMNS---------GNNSELNINI 138
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
DE+ +G+++ ++ L IA I EIR + CS
Sbjct: 139 SMEDENP--------VGEIFGASEEECPCGCH--ARLIIASKIAAEIRERIYKDLHVTCS 188
Query: 121 AGIAHNKV 128
AGIAHNK+
Sbjct: 189 AGIAHNKL 196
>gi|367008858|ref|XP_003678930.1| hypothetical protein TDEL_0A03870 [Torulaspora delbrueckii]
gi|359746587|emb|CCE89719.1| hypothetical protein TDEL_0A03870 [Torulaspora delbrueckii]
Length = 637
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER-MKSIGHIAASQLSNTFVV--- 56
YR R++ + +E+ ++ E+AS+DE ++D+ + ++ M S + + NT +
Sbjct: 131 YRRESRKIFKIFTEYCDLAEKASVDEVFLDIARLCLQKLMGSEQILPGKENHNTIQLMQQ 190
Query: 57 GFGPDNNDEDARKAGV------MEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
F D DA V ++++G + + D L+E+ +D A+ I +E+R
Sbjct: 191 MFKDGTYDSDAFLPPVPEELKELKFVGNLLNPNDEPLIEDWDDVL-FALGSQIAQELRDE 249
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ + S G+A K+
Sbjct: 250 IRQNLGYTTSCGLARTKI 267
>gi|400595519|gb|EJP63314.1| impB/mucB/samB family protein [Beauveria bassiana ARSEF 2860]
Length = 799
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 22/139 (15%)
Query: 1 YRNAGREVIAVLSEF--SNI--VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFV- 55
YR R ++A++ E N+ VE+AS+DE ++DL+ VH S L + F
Sbjct: 263 YRLESRRILALVREHLPQNLQRVEKASVDEVFLDLSAQVH-----------SILLDRFPE 311
Query: 56 VGFGPDNNDEDAR----KAGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRA 109
+ P ND R ++W D D D+ ++AI IV +R+
Sbjct: 312 LQQPPPYNDPTERLPLPSVSALDWQADALVDLDEEREGQDPDWDDVAILVGSEIVRGLRS 371
Query: 110 AVLSKTQFHCSAGIAHNKV 128
+ + ++ CSAG+A NK+
Sbjct: 372 EIRERMRYTCSAGVACNKL 390
>gi|344245022|gb|EGW01126.1| DNA polymerase iota [Cricetulus griseus]
Length = 670
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIAASQLSNTFVVGF 58
YR +V +L EFS +VER DE ++DLT++V +R++ + I + +S
Sbjct: 59 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLPRDEILSVTVS------- 111
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
G +Y++ +L T L + I EIR A+ + Q
Sbjct: 112 ------------------GHIYNNQSVNLHNITH--VRLVVGSQIAAEIREAMYHQLQLT 151
Query: 119 CSAGIAHNKV 128
AG+A NK+
Sbjct: 152 GCAGVAPNKL 161
>gi|51247537|pdb|1T3N|A Chain A, Structure Of The Catalytic Core Of Dna Polymerase Iota In
Complex With Dna And Dttp
gi|51247538|pdb|1T3N|B Chain B, Structure Of The Catalytic Core Of Dna Polymerase Iota In
Complex With Dna And Dttp
gi|73535911|pdb|1ZET|A Chain A, X-Ray Data Do Not Support Hoogsteen Base-Pairing During
Replication By Human Polymerase Iota
Length = 388
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 76 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 128
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 129 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 170
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 171 AGVASNKL 178
>gi|76157725|gb|AAX28563.2| SJCHGC04877 protein [Schistosoma japonicum]
Length = 193
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQ 49
YR A EVI +SEF++ +ERASIDEAY+DLT +V + ++++ Q
Sbjct: 90 YRVASSEVIQCISEFTSDIERASIDEAYVDLTAIVDSTLDRDNNLSSLQ 138
>gi|452842927|gb|EME44862.1| hypothetical protein DOTSEDRAFT_70800 [Dothistroma septosporum
NZE10]
Length = 628
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIAV----LSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++A+ L + VE+ASIDE ++DL+ VH + H +L
Sbjct: 83 YRIESRKILALIKDCLPKEVQKVEKASIDEVFLDLSAQVHGILLERYH----ELR----- 133
Query: 57 GFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIR 108
GP D+ + + V++W D D E + D+ ++ IA IV ++R
Sbjct: 134 --GPAPYDDPSEPLPRPPSTVLDWKADALVDLDEKWSEEEDPDWDDVVMLIASEIVRDVR 191
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
A + + ++ CSAG++ NK+
Sbjct: 192 ARIFKELKYTCSAGLSRNKM 211
>gi|354499580|ref|XP_003511886.1| PREDICTED: DNA polymerase iota [Cricetulus griseus]
Length = 708
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIAASQLSNTFVVGF 58
YR +V +L EFS +VER DE ++DLT++V +R++ + I + +S
Sbjct: 97 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLPRDEILSVTVS------- 149
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
G +Y++ +L T L + I EIR A+ + Q
Sbjct: 150 ------------------GHIYNNQSVNLHNITH--VRLVVGSQIAAEIREAMYHQLQLT 189
Query: 119 CSAGIAHNKV 128
AG+A NK+
Sbjct: 190 GCAGVAPNKL 199
>gi|405952422|gb|EKC20236.1| DNA polymerase iota [Crassostrea gigas]
Length = 734
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 42/136 (30%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKS------IGHIAASQLSNTF 54
YRN ++ L +++ VER +DE Y+D++++V E MK GH+
Sbjct: 115 YRNMSYKISEFLLKYTQYVERLGMDENYLDVSELV-ECMKDKTPLTVAGHV--------- 164
Query: 55 VVGFGPDNND--EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
FG N D ED G ++ + I I EEIRAA+
Sbjct: 165 ---FGDSNQDSPEDICTCGC---------------------YERILIGSHIAEEIRAALY 200
Query: 113 SKTQFHCSAGIAHNKV 128
+ C AGIAHNK+
Sbjct: 201 KEMGITCCAGIAHNKL 216
>gi|254574961|pdb|3H40|A Chain A, Binary Complex Of Human Dna Polymerase Iota With Template
UT
Length = 389
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 77 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 129
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 130 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 171
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 172 AGVASNKL 179
>gi|82407825|pdb|2ALZ|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp
gi|254574964|pdb|3H4B|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Template
UT AND Incoming Datp
gi|254574967|pdb|3H4D|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Template
UT AND Incoming Dgtp
Length = 390
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 78 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 130
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 131 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 172
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 173 AGVASNKL 180
>gi|298709408|emb|CBJ49221.1| translesion synthesis DNA polymerase eta splice variant [Ectocarpus
siliculosus]
Length = 838
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 67/188 (35%)
Query: 1 YRNAGREVIAVLSEFS---NIVERASIDEAYIDLT------------------------- 32
YR+AG V+AVL VE+ASIDE Y+D+T
Sbjct: 146 YRHAGERVVAVLERAGGALTTVEKASIDEVYVDVTRAAHALLSSLGSHNSESGGDQPQQH 205
Query: 33 ----------------------------DVVHERMKSIGH----IAASQLSNTFVVGFGP 60
+V +R + IG S + T V G
Sbjct: 206 QQQDEDGKGASAEEGSKAPPAASPMEDGEVSKKRWEDIGEGGWTAVLSATATTHVAGLSD 265
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
D+ ++ + A + W ++ T + T D + L+ +V +RAAV S+ + C+
Sbjct: 266 DHASKEQQLADGVSW----WARTQEAF---TRDQELLSCGAAVVSRLRAAVRSELGYSCT 318
Query: 121 AGIAHNKV 128
AG+AHNK+
Sbjct: 319 AGVAHNKL 326
>gi|402084841|gb|EJT79859.1| sister chromatid cohesion protein Eso1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 785
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 21/139 (15%)
Query: 1 YRNAGREVIAVLSE----FSNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSN 52
YR R ++A++ E VE+AS+DE +IDL+ VH ER + A Q
Sbjct: 148 YRLQSRRILALIKECLPPTQCKVEKASVDEVFIDLSANVHTVLLERFPELAATAPRQ--- 204
Query: 53 TFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE---DFQELAIAGVIVEEIRA 109
P N + V++W D D E + D L +A IV IR
Sbjct: 205 ------DPFENLPPP-SSTVLDWQSDNLVDLDEVEAETDDPDWDDVVLLLASEIVRNIRL 257
Query: 110 AVLSKTQFHCSAGIAHNKV 128
AV + + CSAG+A NK+
Sbjct: 258 AVRERLGYTCSAGVASNKL 276
>gi|452984835|gb|EME84592.1| hypothetical protein MYCFIDRAFT_203083 [Pseudocercospora fijiensis
CIRAD86]
Length = 667
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIAVLSEF----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++A + E VE+ASIDE ++DL+ VH S L +
Sbjct: 141 YRIESRKILATIKESLPADKQKVEKASIDEVFLDLSAHVH-----------SLLLQRYPQ 189
Query: 57 GFGPDNNDEDARK-----AGVMEWLGQVYSDTD-TSLMENTEDFQELA--IAGVIVEEIR 108
P D+ ++W D D T E+ D+ ++ IA IV ++R
Sbjct: 190 LDAPPPYDDPTEPLPKPPTTALDWKADALVDLDNTHNEEDDPDWDDVVMLIASEIVRDVR 249
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
A + K ++ CSAGI+ NK+
Sbjct: 250 AQIFRKLKYTCSAGISRNKM 269
>gi|395749898|ref|XP_003779026.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase iota [Pongo abelii]
Length = 703
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS
Sbjct: 119 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELS--------- 166
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
VM G VY++ +L + L + I E+R A+ ++
Sbjct: 167 -----------VMTVSGHVYNNQSINLHDILH--IRLLVGSQIAAEMREAMYNQLGLTGC 213
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 214 AGVASNKL 221
>gi|388583788|gb|EIM24089.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 584
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 28/145 (19%)
Query: 1 YRNAGREVIAVLSEF--SNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQ----- 49
YR G +V+ + E +E+ASIDE YIDLT++V ER + + +
Sbjct: 116 YRREGAKVLKCMQEIFVGCEIEKASIDEQYIDLTELVRNKILERYPFLKQLPPDKTLDDV 175
Query: 50 LSNTFVVGFG------PDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVI 103
L ++ F P ++++ + G++ +D + M+ T + + + +
Sbjct: 176 LPEPPIISFADVGNVIPTSSEKGSD--------GEIIADEE---MQTTWEDVAIQVGAQL 224
Query: 104 VEEIRAAVLSKTQFHCSAGIAHNKV 128
V E R + K + CSAGI+HNK+
Sbjct: 225 VAEARKIMFEKIGYTCSAGISHNKI 249
>gi|345305688|ref|XP_001509638.2| PREDICTED: DNA polymerase iota-like [Ornithorhynchus anatinus]
Length = 831
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EF +VER DE ++D+T++V +RM+ + P
Sbjct: 217 YREMSYKVTELLEEFCPVVERLGFDENFVDITEMVEKRMQQL-----------------P 259
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
N+ + +G VY+ + ++ N L I I E+R A+ S+
Sbjct: 260 SND------CSTVSVVGHVYN--NQTVNPNDILHVRLLIGSQIAAEMREAIHSRLGLTGC 311
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 312 AGVASNKL 319
>gi|7533183|gb|AAF63383.1|AF245438_1 DNA polymerase iota [Homo sapiens]
Length = 715
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 102 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 154
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 155 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVASNKL 204
>gi|119583404|gb|EAW63000.1| polymerase (DNA directed) iota, isoform CRA_a [Homo sapiens]
Length = 739
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 126 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 178
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 179 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 220
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 221 AGVASNKL 228
>gi|118403518|ref|NP_001027479.2| polymerase (DNA directed) iota [Xenopus (Silurana) tropicalis]
gi|113197613|gb|AAI21200.1| DNA polymerase iota [Xenopus (Silurana) tropicalis]
Length = 742
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 30/130 (23%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +L EFS VER DE YID+T++V ++++
Sbjct: 124 YREMSYRATELLEEFSPQVERLGFDENYIDVTELVDKKLQE------------------- 164
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAG--VIVEEIRAAVLSKTQFH 118
+ R GV G VYSD N D+ + IA I EIRAA+ ++
Sbjct: 165 --ERGNGRNPGV---CGHVYSDQKM----NVNDWAHVRIAAGSHIASEIRAALYNRLGLT 215
Query: 119 CSAGIAHNKV 128
AG A NK+
Sbjct: 216 GCAGTASNKL 225
>gi|157868888|ref|XP_001682996.1| putative DNA polymerase eta [Leishmania major strain Friedlin]
gi|68223879|emb|CAJ04143.1| putative DNA polymerase eta [Leishmania major strain Friedlin]
Length = 760
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR+A R++ ++L+ + VE+ S+DEAY+D+T+ + + AA +
Sbjct: 112 YRHASRQIFSILAATPGVQVEKGSVDEAYVDVTEAARRELAEVRAAAAGASLDPLEDVME 171
Query: 60 PDNNDEDARKAGVMEW-------LGQVYSDTDTSL--------MENTEDF---------- 94
P + R+A + W L V+ + +L +E + F
Sbjct: 172 PSTRLIEDRRAEMEAWLSARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGADDAAYA 231
Query: 95 ---QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
L A +V +R + ++ + CSAGIAHN+V
Sbjct: 232 ERCLLLCAASRVVHRLRQRIYAELHYDCSAGIAHNRV 268
>gi|5739208|gb|AAD50381.1|AF140501_1 DNA polymerase iota [Homo sapiens]
gi|20160209|gb|AAM11872.1| polymerase (DNA directed) iota [Homo sapiens]
Length = 715
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 102 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 154
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 155 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVASNKL 204
>gi|21619716|gb|AAH32662.1| Polymerase (DNA directed) iota [Homo sapiens]
gi|123979980|gb|ABM81819.1| polymerase (DNA directed) iota [synthetic construct]
gi|124000603|gb|ABM87810.1| polymerase (DNA directed) iota [synthetic construct]
Length = 715
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 102 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 154
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 155 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVASNKL 204
>gi|154350220|ref|NP_009126.2| DNA polymerase iota [Homo sapiens]
gi|327478565|sp|Q9UNA4.3|POLI_HUMAN RecName: Full=DNA polymerase iota; AltName: Full=Eta2; AltName:
Full=RAD30 homolog B
Length = 740
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 127 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 179
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 180 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 221
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 222 AGVASNKL 229
>gi|110591264|pdb|2DPI|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp
gi|110591267|pdb|2DPJ|A Chain A, Structure Of Hpoli With Dna And Dttp
gi|119389500|pdb|2FLN|A Chain A, Binary Complex Of Catalytic Core Of Human Dna Polymerase
Iota With Dna (Template A)
gi|119389503|pdb|2FLP|A Chain A, Binary Complex Of The Catalytic Core Of Human Dna
Polymerase Iota With Dna (Template G)
gi|122920195|pdb|2FLL|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Dna And
Dttp
gi|218681853|pdb|3EPG|A Chain A, Structure Of Human Dna Polymerase Iota Complexed With
N2-Ethylguanine
gi|218681856|pdb|3EPI|A Chain A, Structure Of Human Dna Polymerase Iota Complexed With
N2-Ethylguanine And Incoming Ttp
gi|237640547|pdb|3G6V|A Chain A, Dna Synthesis Across An Abasic Lesion By Human Dna
Polymerase-Iota
gi|237640550|pdb|3G6X|A Chain A, Ternary Complex Of Dna Polymerase Iota:dna:dgtp With An
Abasic Site At The Templating Position
gi|237640553|pdb|3G6Y|A Chain A, Ternary Complex Of Dna Polymerase Iota:dna:dttp With An
Abasic Site At The Templating Position
gi|238828276|pdb|3GV7|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Dttp
gi|238828279|pdb|3GV8|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Dgtp
gi|309319996|pdb|3NGD|A Chain A, Structural Basis For Proficient Incorporation Of Dttp
Opposite O6- Methylguanine By Human Dna Polymerase Iota
gi|309320677|pdb|3OSN|A Chain A, Structural Basis For Proficient Incorporation Of Dttp
Opposite O6- Methylguanine By Human Dna Polymerase Iota
gi|323714640|pdb|3Q8P|B Chain B, Human Dna Polymerase Iota Incorporating Dctp Opposite
8-Oxo-Guanine
gi|323714643|pdb|3Q8Q|B Chain B, Human Dna Polymerase Iota Incorporating Datp Opposite
8-Oxo-Guanine
gi|323714646|pdb|3Q8R|B Chain B, Human Dna Polymerase Iota Incorporating Dgtp Opposite
8-Oxo-Guanine
gi|323714649|pdb|3Q8S|B Chain B, Human Dna Polymerase Iota Incorporating Dttp Opposite
8-Oxo-Guanine
gi|390981111|pdb|4EBC|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
gi|390981114|pdb|4EBD|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
gi|390981117|pdb|4EBE|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
gi|402550536|pdb|4FS1|A Chain A, Base Pairing Mechanism Of N2,3-Ethenoguanine With Dttp By
Human Polymerase Iota
gi|402550539|pdb|4FS2|A Chain A, Base Pairing Mechanism Of N2,3-Ethenoguanine With Dctp By
Human Polymerase Iota
gi|440690932|pdb|4EYH|B Chain B, Human Dna Polymerase Iota Incorporating Dctp Opposite N-
(deoxyguanosin-8-yl)-1-aminopyrene Lesion
gi|440690936|pdb|4EYI|B Chain B, Human Dna Polymerase Iota Incorporating Datp Opposite N-
(deoxyguanosin-8-yl)-1-aminopyrene Lesion
Length = 420
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 102 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 154
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 155 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVASNKL 204
>gi|12052864|emb|CAB66605.1| hypothetical protein [Homo sapiens]
gi|117644780|emb|CAL37856.1| hypothetical protein [synthetic construct]
gi|208965366|dbj|BAG72697.1| polymerase (DNA directed) iota [synthetic construct]
Length = 715
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 102 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 154
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 155 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVASNKL 204
>gi|149064585|gb|EDM14788.1| polymerase (DNA directed), iota (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 669
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + ++ +
Sbjct: 59 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQQLPSDEVPSVTMS------- 111
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L +T LA+ I E+R A+ ++
Sbjct: 112 ----------------GHVYNNQSVNLHSSTH--VRLAVGSQIAAEMREAMHNQLGLTGC 153
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 154 AGVAPNKL 161
>gi|328768045|gb|EGF78092.1| hypothetical protein BATDEDRAFT_26797 [Batrachochytrium
dendrobatidis JAM81]
Length = 604
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 11/133 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR A +++ +LS+ + V++ASIDEAY+D+TD V++ ++S G+ + +S + P
Sbjct: 125 YRQASNKIMDILSKCGSPVKQASIDEAYVDITDYVNKLIES-GY-WKNIMSESHSECKDP 182
Query: 61 DNNDEDARKAGVM-EWLGQVYSDTDTSLMENTEDFQ----ELAIAGVIVEEIRAAVLSKT 115
+ + G M W DT +++ + + +L + + +R + +
Sbjct: 183 QDEQQVHSDMGPMVRW----NKDTCSAMGDLVTSYGIFDLQLYLGSRLSASLRKQIFDEL 238
Query: 116 QFHCSAGIAHNKV 128
+ CS GIAH K+
Sbjct: 239 GYTCSTGIAHGKI 251
>gi|157868886|ref|XP_001682995.1| putative DNA polymerase eta [Leishmania major strain Friedlin]
gi|68223878|emb|CAJ04131.1| putative DNA polymerase eta [Leishmania major strain Friedlin]
Length = 786
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 1 YRNAGREVIAVL-SEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR+A R++ A+L +E +V +A IDEAY+D+T+ + + AA +
Sbjct: 132 YRHASRQIFAILRAEPGVVVGKAGIDEAYVDVTEAARRELAEVRAAAAGASLDPLEDVME 191
Query: 60 PDNNDEDARKAGVMEW-------LGQVYSDTDTSL--------MENTEDF---------- 94
P + R+A + W L V+ + +L +E + F
Sbjct: 192 PSTRLIEDRRAEMEAWLSARGTSLAAVFDEPMRALVRGECGAELEGSRAFCVGADDAAYA 251
Query: 95 ---QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
L A +V +R + ++ + CSAGIAHN+V
Sbjct: 252 ERCLLLCAASRVVHRLRQRIYAELHYDCSAGIAHNRV 288
>gi|406861269|gb|EKD14324.1| impB/mucB/samB family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 717
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIA----VLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R ++ L E VE+ASIDE ++DL+ +H + L +
Sbjct: 141 YRLESRRILKCIKDALPEKYRKVEKASIDEVFMDLSAQIH-----------ATLLERYEE 189
Query: 57 GFGPDNNDEDAR-----KAGVMEWLGQVYSDTDTSLMENTE-DFQELAI--AGVIVEEIR 108
GP D+ V++W D D E + D+ ++AI I+ ++R
Sbjct: 190 LRGPAPYDDPTELLPLPPTTVLDWKADALVDLDVDETEEDDPDWDDVAILIGSEIIRDVR 249
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AAV + ++ CS G+A NK+
Sbjct: 250 AAVRTHLKYTCSGGVAQNKM 269
>gi|346320479|gb|EGX90079.1| sister chromatid cohesion protein Eso1 [Cordyceps militaris CM01]
Length = 670
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 20/138 (14%)
Query: 1 YRNAGREVIAVLSEF--SNI--VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R ++A++ + N+ VE+ASIDE ++DL+ VH SI +L
Sbjct: 142 YRLESRRILALVHDHLPQNLQRVEKASIDEVFLDLSAQVH----SILLDRFPELQQP--- 194
Query: 57 GFGPDNNDEDAR----KAGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAA 110
P ND R ++W D D D+ ++AI IV ++R+
Sbjct: 195 ---PPYNDPSERLPMPSVSALDWKADALVDLDEDREGEDPDWDDVAILVGSEIVRDLRSE 251
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ K ++ CSAG+A NK+
Sbjct: 252 IREKLRYTCSAGVACNKL 269
>gi|157821829|ref|NP_001099607.1| DNA polymerase iota [Rattus norvegicus]
gi|149064586|gb|EDM14789.1| polymerase (DNA directed), iota (predicted), isoform CRA_c [Rattus
norvegicus]
Length = 732
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + ++ +
Sbjct: 122 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQQLPSDEVPSVTMS------- 174
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L +T LA+ I E+R A+ ++
Sbjct: 175 ----------------GHVYNNQSVNLHSSTH--VRLAVGSQIAAEMREAMHNQLGLTGC 216
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 217 AGVAPNKL 224
>gi|426386012|ref|XP_004059489.1| PREDICTED: DNA polymerase iota [Gorilla gorilla gorilla]
Length = 739
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 126 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 178
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 179 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 220
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 221 AGVASNKL 228
>gi|119583405|gb|EAW63001.1| polymerase (DNA directed) iota, isoform CRA_b [Homo sapiens]
Length = 429
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 126 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 178
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 179 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 220
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 221 AGVASNKL 228
>gi|342878015|gb|EGU79426.1| hypothetical protein FOXB_10011 [Fusarium oxysporum Fo5176]
Length = 1648
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 28/142 (19%)
Query: 1 YRNAGREVIAVLSEFSNI----VERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSN 52
YR R+++A + E + VE+ASIDE ++DL+ H ER +LSN
Sbjct: 142 YRLQSRKILACIKEALPLDLQKVEKASIDEVFLDLSSQTHLILLERF--------PELSN 193
Query: 53 TFVVGFGPDNNDEDAR----KAGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEE 106
P +D ++W D D D+ ++AI IV +
Sbjct: 194 P------PPYDDPTENLPLPSIAALDWQTDALIDLDEEQETVDPDWDDVAILIGSEIVRK 247
Query: 107 IRAAVLSKTQFHCSAGIAHNKV 128
+RA V K + CSAG+A NK+
Sbjct: 248 VRAEVRQKLGYTCSAGVASNKL 269
>gi|114673193|ref|XP_001156755.1| PREDICTED: DNA polymerase iota isoform 3 [Pan troglodytes]
Length = 739
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS
Sbjct: 126 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVGKRLQ---QLQSDELS--------- 173
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
V+ G VY++ +L++ L + I E+R A+ ++
Sbjct: 174 -----------VVTVSGHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 220
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 221 AGVASNKL 228
>gi|397513971|ref|XP_003827278.1| PREDICTED: DNA polymerase iota [Pan paniscus]
Length = 739
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS
Sbjct: 126 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVGKRLQ---QLQSDELS--------- 173
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
V+ G VY++ +L++ L + I E+R A+ ++
Sbjct: 174 -----------VVTVSGHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 220
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 221 AGVASNKL 228
>gi|403268064|ref|XP_003926107.1| PREDICTED: DNA polymerase iota isoform 1 [Saimiri boliviensis
boliviensis]
Length = 715
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 102 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLR---QLQSDELSAVTVS---- 154
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 155 ----------------GHVYNNQSINLHDILH--IRLLVGSQIAAEMREAMYNRLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVASNKL 204
>gi|417412383|gb|JAA52580.1| Putative dna polymerase iota/dna damage inducible protein, partial
[Desmodus rotundus]
Length = 703
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++D+T++V +R++ + S L +
Sbjct: 90 YREMSYKVTELLEEFSPVVERLGFDENFVDITEMVEKRLQQLQSDDLSALPVS------- 142
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY+D +L N + L + + E+R A+ +
Sbjct: 143 ----------------GHVYNDQSVNL--NDVLHRRLLVGSQMAAEMREAMCDRLGLTGC 184
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 185 AGVASNKL 192
>gi|406601529|emb|CCH46835.1| N-acetyltransferase [Wickerhamomyces ciferrii]
Length = 657
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR R+++ + ++VE+AS+DE+++DL +V +R+ + Q+ N GF P
Sbjct: 142 YRRESRKILKIFKSIVDLVEKASVDESFMDLGRLVIKRVFEMIPDLQKQIENLDSDGFLP 201
Query: 61 DNNDEDARKAGVMEWLGQVYSDT--DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
D +E G V ++ TSL+ D + I G I EIR V + +
Sbjct: 202 LIPD-----GFTLEVTGDVITNEFDSTSLIIKDWDDLLMIIGGQITNEIRLQVQKELGYT 256
Query: 119 CSAGIAHNK 127
SAG+ K
Sbjct: 257 LSAGVGRVK 265
>gi|154309314|ref|XP_001553991.1| hypothetical protein BC1G_07551 [Botryotinia fuckeliana B05.10]
Length = 668
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIAV----LSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR + ++A L + VE+AS+DE ++DL+ +H + L +
Sbjct: 141 YRLESKRILACIKDCLPKHLQRVEKASVDEVFMDLSAQIH-----------ATLLERYPE 189
Query: 57 GFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIR 108
GP D+ + ++W D D + E + D+ ++A I IV +R
Sbjct: 190 LKGPAPYDDLTEQLPLPPTTFLDWKADALVDLDKNEAETDDPDWDDIAMLIGSEIVRTVR 249
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
AA+ K ++ CSAG+A NK+
Sbjct: 250 AAIREKLKYTCSAGVAQNKM 269
>gi|343960024|dbj|BAK63866.1| DNA polymerase iota [Pan troglodytes]
Length = 715
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS
Sbjct: 102 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVGKRLQ---QLQSDELS--------- 149
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
V+ G VY++ +L++ L + I E+R A+ ++
Sbjct: 150 -----------VVTVSGHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVASNKL 204
>gi|296817667|ref|XP_002849170.1| DNA polymerase eta [Arthroderma otae CBS 113480]
gi|238839623|gb|EEQ29285.1| DNA polymerase eta [Arthroderma otae CBS 113480]
Length = 646
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 37/158 (23%)
Query: 1 YRNAGREVIAVL-------------------SEFSNIV--ERASIDEAYIDLTDVVH--- 36
YR R+++AV+ SE S++V ERA IDE ++DL+ +V
Sbjct: 135 YRAESRKILAVMKATLLSCAEGIYEGCRGQFSEPSDMVRLERAGIDEVFVDLSALVFGTL 194
Query: 37 -ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ----VYSDTDTSLMENT 91
+R + + A + S + GF P +A + W G+ + DT S E+
Sbjct: 195 LQRYEVLRSAEAVECSTDSLGGFLP------RPEATALVW-GEDDELIDLDTGKSEEEDP 247
Query: 92 E-DFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
E D + + IV+ IRAAV + ++ CS GIA NK+
Sbjct: 248 EWDDIVMLVGSEIVKSIRAAVWDQLKYTCSGGIARNKM 285
>gi|328852695|gb|EGG01839.1| hypothetical protein MELLADRAFT_117712 [Melampsora larici-populina
98AG31]
Length = 672
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT----DVVHERMKSIGHIAASQLSNTFVV 56
YR +++ + SE +++E+ASIDEA++D + D++ R + ++ S+ +N +
Sbjct: 122 YRRESVKILKIFSESCDLIEKASIDEAFLDFSIPVRDILINRYSDL--LSTSKTNN--LD 177
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQ 116
F P D + L S+ D +M T L I ++ + R AV +
Sbjct: 178 DFLPPPPQLDWKSTEHNLILNTSDSEVD-EMMTTTWTDVALMIGAELMAQCRKAVFDQLG 236
Query: 117 FHCSAGIAHNKV 128
+ CSAG+ NK+
Sbjct: 237 YTCSAGVTSNKM 248
>gi|156378071|ref|XP_001630968.1| predicted protein [Nematostella vectensis]
gi|156217999|gb|EDO38905.1| predicted protein [Nematostella vectensis]
Length = 403
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 36/135 (26%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR V +L F+ VER +DE Y+D++++V ERMK
Sbjct: 77 YREFSSRVTKLLRRFALRVERLGLDENYVDVSELVQERMKHAPR---------------- 120
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTED-------FQELAIAGVIVEEIRAAVLS 113
G +G +Y D ++++ + + + L + VI E+R A+
Sbjct: 121 ----------GSYIAVGCIYGD---NILKGSSNEVCPCGCHERLTVGSVIASELRKAIFD 167
Query: 114 KTQFHCSAGIAHNKV 128
+ AGIAHNK+
Sbjct: 168 EIGLTTCAGIAHNKL 182
>gi|345566460|gb|EGX49403.1| hypothetical protein AOL_s00078g436 [Arthrobotrys oligospora ATCC
24927]
Length = 776
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR ++++A+ E VE+AS+DE+++DL+ +V ++ + V +G
Sbjct: 135 YRRESKKILAIFREGCPKVEKASVDESFLDLSGLVFGKLLERFEEELGVVDGEIVPPYGD 194
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTE--DFQE--LAIAGVIVEEIRAAVLSKTQ 116
+ +EW D D E D+ + + IA IV +IR V +
Sbjct: 195 TTERLRMPEVAGVEWGNSHLVDLDDGEEGEEEPIDWDDIIMGIAAEIVADIRGEVRRRLG 254
Query: 117 FHCSAGIAHNKV 128
+ CSAGI+ NK+
Sbjct: 255 YTCSAGISRNKM 266
>gi|440634992|gb|ELR04911.1| hypothetical protein GMDG_00170 [Geomyces destructans 20631-21]
Length = 641
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 19/137 (13%)
Query: 1 YRNAGREVIAVLSEFS----NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++A + E VE+A IDE ++DL+ VH +I +LS+
Sbjct: 140 YRLESRKILACMKECLPPDLQRVEKAGIDEVFLDLSAQVH----TILLDRYPELSSP--- 192
Query: 57 GFGPDNNDE--DARKAGVMEWLGQVYSDTDTSLMENTEDFQE---LAIAGVIVEEIRAAV 111
P + E V++W D D S E+ + + + + IV ++RAAV
Sbjct: 193 ---PKDLSEFLPLPPTTVLDWQADALVDLDASETEDDDPDWDDVAILLGSEIVRDVRAAV 249
Query: 112 LSKTQFHCSAGIAHNKV 128
+ ++ CS GIAHNK+
Sbjct: 250 SEQLKYTCSGGIAHNKM 266
>gi|70955242|gb|AAZ16247.1| DNA polymerase iota [Xenopus (Silurana) tropicalis]
Length = 742
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 26/128 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +L EFS VER DE YID+T++V ++++
Sbjct: 124 YREMSYRATELLEEFSPQVERLGFDENYIDVTELVDKKLQE------------------- 164
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+ R GV G VYSD ++ N +A I EIRAA+ ++
Sbjct: 165 --ERGNGRNPGV---CGHVYSDQKMNV--NNWAHVRIAAGSHIASEIRAALYNRLGLTGC 217
Query: 121 AGIAHNKV 128
AG A NK+
Sbjct: 218 AGTASNKL 225
>gi|449017709|dbj|BAM81111.1| similar to DNA-damage-inducible protein P [Cyanidioschyzon merolae
strain 10D]
Length = 516
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 59/128 (46%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR ++ +LS FS+ VER SIDEA+I+LTDVV
Sbjct: 120 YRLESEKIFGILSRFSDAVERCSIDEAFIELTDVV------------------------- 154
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
D+ DE R +V+ +R A+L + ++ CS
Sbjct: 155 DDFDEAVR----------------------------------LVQRMRDAILDELRYTCS 180
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 181 AGVACNKM 188
>gi|334325369|ref|XP_001362838.2| PREDICTED: DNA polymerase iota [Monodelphis domestica]
Length = 738
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++D+T V +R++ + + S V
Sbjct: 124 YREMSYKVTELLEEFSPVVERLGFDENFVDVTQTVEKRLQ---QLQSDDYSGVVVS---- 176
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L N L I I EE+R A+ ++
Sbjct: 177 ----------------GHVYNNQSVNL--NDILHVRLLIGSQIAEEMREAIFNQLGLTGC 218
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 219 AGVASNKL 226
>gi|291399949|ref|XP_002716300.1| PREDICTED: DNA polymerase iota, partial [Oryctolagus cuniculus]
Length = 709
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 124 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEIVEKRLQ---QLPSDELSAATVS---- 176
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 177 ----------------GHVYNNQPVNLHDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 218
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 219 AGVASNKL 226
>gi|296473688|tpg|DAA15803.1| TPA: DNA polymerase iota [Bos taurus]
Length = 747
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V G
Sbjct: 137 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLE---QLQSDELSALTVSGHVY 193
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+N + R DT + L + IV E+R A+ +
Sbjct: 194 NNQPVNPR---------------DTLHI-------RLLVGSQIVAEMREAMYQQLGLTGC 231
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 232 AGVASNKL 239
>gi|67010005|ref|NP_001019863.1| DNA polymerase iota [Bos taurus]
gi|66393909|gb|AAY46031.1| DNA polymerase iota [Bos taurus]
Length = 747
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V G
Sbjct: 137 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLE---QLQSDELSALTVSGHVY 193
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+N + R DT + L + IV E+R A+ +
Sbjct: 194 NNQPVNPR---------------DTLHI-------RLLVGSQIVAEMREAMYQQLGLTGC 231
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 232 AGVASNKL 239
>gi|291394393|ref|XP_002713588.1| PREDICTED: DNA polymerase iota [Oryctolagus cuniculus]
Length = 733
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 124 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEIVEKRLQ---QLPSDELSAATVS---- 176
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 177 ----------------GHVYNNQPVNLHDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 218
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 219 AGVASNKL 226
>gi|414884035|tpg|DAA60049.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 378
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 87 LMENTEDFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
L ++ D+Q+ L +IV ++R VL +TQF CSAGIAHNK+
Sbjct: 40 LCQSEADYQDKLLPCGAIIVAQLRVRVLEETQFTCSAGIAHNKM 83
>gi|332028674|gb|EGI68708.1| DNA polymerase iota [Acromyrmex echinatior]
Length = 576
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIG--HIAASQLSNTFVVGF 58
YR+ ++ +L +F+ +VER D+ ++D+T +V +++KS + S S F
Sbjct: 87 YRHYSTKISEILHQFTPLVERLGFDDNFLDVTSIVEKQLKSQNDTELDMSNSSTEF---- 142
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
ED ++ L +++ ++ L I I +IR + +
Sbjct: 143 ------EDLKE------LSKIFGPSEEECPCGCH--TRLIIGSKIAADIRNRIYEELHLT 188
Query: 119 CSAGIAHNKV 128
CSAGIAHNK+
Sbjct: 189 CSAGIAHNKL 198
>gi|355755039|gb|EHH58906.1| DNA polymerase iota [Macaca fascicularis]
Length = 738
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 125 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 177
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L I I E+R A+ +
Sbjct: 178 ----------------GHVYNNQSINLHDILH--IRLLIGSQIAAEMREAMYNHLGLTGC 219
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 220 AGVASNKL 227
>gi|194214689|ref|XP_001499840.2| PREDICTED: DNA polymerase iota-like [Equus caballus]
Length = 864
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ QL N ++
Sbjct: 231 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ--------QLQNDELLALTV 282
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R AV ++
Sbjct: 283 S---------------GHVYNNQFVNLHDVLH--IRLLVGSQIAAEMREAVYNRLGLTGC 325
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 326 AGVASNKL 333
>gi|67971498|dbj|BAE02091.1| unnamed protein product [Macaca fascicularis]
Length = 637
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 24 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 76
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L I I E+R A+ +
Sbjct: 77 ----------------GHVYNNQSINLHDILH--IRLLIGSQIAAEMREAMYNHLGLTGC 118
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 119 AGVASNKL 126
>gi|347969379|ref|XP_312847.5| AGAP003157-PA [Anopheles gambiae str. PEST]
gi|333468498|gb|EAA08441.5| AGAP003157-PA [Anopheles gambiae str. PEST]
Length = 807
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI-GHIAASQLSN-TFVVGF 58
Y+ + ++ F+ VE+ +DE Y+D+T+++ ER++ + G ++ L+ FV GF
Sbjct: 90 YKAMSVRINEIMHRFTPHVEKLGLDENYLDVTELIAERLEQLEGAGDSAALAKLDFVQGF 149
Query: 59 -GPDNNDEDARKAGVMEWLGQVYSDTDT-SLMENTEDFQELAIAGVIVEEIRAAVLSKTQ 116
P DE + ++ +D D + L +A + +EIR + +
Sbjct: 150 IHPPRTDESS----ALDPPSHRETDRDLFRRCCCCGCDRRLILATHLAQEIRDCIFQELG 205
Query: 117 FHCSAGIAHNKV 128
C AGIAHNK+
Sbjct: 206 LRCCAGIAHNKL 217
>gi|384945076|gb|AFI36143.1| DNA polymerase iota [Macaca mulatta]
Length = 737
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 125 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 177
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L I I E+R A+ +
Sbjct: 178 ----------------GHVYNNQSINLHDILH--IRLLIGSQIAAEMREAMYNHLGLTGC 219
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 220 AGVASNKL 227
>gi|383862079|ref|XP_003706511.1| PREDICTED: DNA polymerase iota-like [Megachile rotundata]
Length = 565
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 25/131 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR+ +++ VL +F+ +VER D+ ++D T +V + M
Sbjct: 88 YRHFSDKILEVLHQFTPLVERLGFDDNFLDATSLVQKYMNP------------------- 128
Query: 61 DNNDEDARKAGVME---WLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
N+ D + ME +G+V+ + L IA I EIR + +
Sbjct: 129 -GNESDLNMSISMEDETPIGEVFGSVEEECPCGCH--ARLIIATKIAAEIRQRIHKELHV 185
Query: 118 HCSAGIAHNKV 128
CSAGIAHNK+
Sbjct: 186 TCSAGIAHNKL 196
>gi|374709016|ref|ZP_09713450.1| DNA polymerase IV [Sporolactobacillus inulinus CASD]
Length = 403
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR ++ +L +++NIVE+ASIDE Y+D+++ +H R
Sbjct: 83 YRRTSEQLFTLLKDYTNIVEKASIDEGYLDVSNWIHRR 120
>gi|402903152|ref|XP_003914442.1| PREDICTED: DNA polymerase iota [Papio anubis]
Length = 737
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 124 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 176
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L I I E+R A+ +
Sbjct: 177 ----------------GHVYNNQSINLHDILH--IRLLIGSQIAAEMREAMYNHLGLTGC 218
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 219 AGVASNKL 226
>gi|383415497|gb|AFH30962.1| DNA polymerase iota [Macaca mulatta]
Length = 737
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 125 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 177
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L I I E+R A+ +
Sbjct: 178 ----------------GHVYNNQSINLHDILH--IRLLIGSQIAAEMREAMYNHLGLTGC 219
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 220 AGVASNKL 227
>gi|440902693|gb|ELR53451.1| DNA polymerase iota, partial [Bos grunniens mutus]
Length = 694
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 29/130 (22%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + S L+ +
Sbjct: 84 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLEQLQSDELSALTVS------- 136
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ--ELAIAGVIVEEIRAAVLSKTQFH 118
G VY++ N D L + IV E+R A+ +
Sbjct: 137 ----------------GHVYNNQPV----NPRDMLHIRLLVGSQIVAEMREAMYQQLGLT 176
Query: 119 CSAGIAHNKV 128
AG+A NK+
Sbjct: 177 GCAGVASNKL 186
>gi|221043678|dbj|BAH13516.1| unnamed protein product [Homo sapiens]
Length = 660
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V G
Sbjct: 126 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVSGHVY 182
Query: 61 DNNDEDARKAGVMEWLG 77
+N + A +E LG
Sbjct: 183 NNQCIGYKTAKCLEALG 199
>gi|146419760|ref|XP_001485840.1| hypothetical protein PGUG_01511 [Meyerozyma guilliermondii ATCC
6260]
Length = 673
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 28/146 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR R++I ++ + ++VE+AS+DE Y+DL VH+R+ + QL G
Sbjct: 139 YRRESRKIIKIIKQHCDVVEKASVDECYMDLGREVHKRLL----LEFPQLRQ-----LGL 189
Query: 61 DNNDEDARKAGVMEWLGQVY----SDTDTSLMENTEDFQE---------------LAIAG 101
D + + W G+ D + L EN Q+ + I
Sbjct: 190 KLPDIPPQLPESLYWQGETVRTEAEDAELQLRENVSSSQKPPASPPTISDWDDICVLIGA 249
Query: 102 VIVEEIRAAVLSKTQFHCSAGIAHNK 127
++ +IR + + + S GIA NK
Sbjct: 250 QVLYKIRKLIYDELSYTTSGGIARNK 275
>gi|441602789|ref|XP_004087758.1| PREDICTED: DNA polymerase iota isoform 2 [Nomascus leucogenys]
Length = 660
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V G
Sbjct: 126 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVSGHVY 182
Query: 61 DNNDEDARKAGVMEWLG 77
+N + A +E LG
Sbjct: 183 NNQCIGYKTAKCLEALG 199
>gi|358385031|gb|EHK22628.1| hypothetical protein TRIVIDRAFT_191350 [Trichoderma virens Gv29-8]
Length = 654
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 22/139 (15%)
Query: 1 YRNAGREVIAV----LSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++A+ L + VE+ASIDE ++DL+ VH S+L F
Sbjct: 138 YRLQSRKILALVKDSLPKDLQKVEKASIDEVFLDLSAQVH-----------SELLRRFPE 186
Query: 57 GFGPDNNDEDARK-----AGVMEWLGQ--VYSDTDTSLMENTEDFQELAIAGVIVEEIRA 109
P + + A A ++W V D D ++ D + + IV +RA
Sbjct: 187 LSSPPPSGDVAESLPFPSAAALDWRNDNLVVLDEDQETLDPDWDDVVILLGSEIVRGVRA 246
Query: 110 AVLSKTQFHCSAGIAHNKV 128
+ K + CSAGIA+NK+
Sbjct: 247 EIREKLGYTCSAGIANNKL 265
>gi|296222689|ref|XP_002757294.1| PREDICTED: DNA polymerase iota isoform 2 [Callithrix jacchus]
Length = 659
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V+G
Sbjct: 125 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVLGHVY 181
Query: 61 DNNDEDARKAGVMEWLG 77
+N + +E LG
Sbjct: 182 NNQCIGCKTTKCLEALG 198
>gi|301757741|ref|XP_002914721.1| PREDICTED: DNA polymerase iota-like [Ailuropoda melanoleuca]
Length = 770
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + S L+ +
Sbjct: 157 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSALTVS------- 209
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 210 ----------------GHVYNNQYINLHDIVH--IRLLVGSQIAAEMREAMYNQLGLTGC 251
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 252 AGVASNKL 259
>gi|238828270|pdb|3GV5|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Ddadp
gi|238828273|pdb|3GV5|D Chain D, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Ddadp
Length = 420
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT+ V +R++ + + +LS V
Sbjct: 102 YREXSYKVTELLEEFSPVVERLGFDENFVDLTEXVEKRLQ---QLQSDELSAVTVS---- 154
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E R A ++
Sbjct: 155 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEXREAXYNQLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVASNKL 204
>gi|169780638|ref|XP_001824783.1| DNA polymerase eta [Aspergillus oryzae RIB40]
gi|83773523|dbj|BAE63650.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867099|gb|EIT76352.1| DNA polymerase iota/DNA damage inducible protein [Aspergillus
oryzae 3.042]
Length = 673
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR----KAGVME 74
VE+AS+DE +IDL+ +V+ + +L N GPD +D A +E
Sbjct: 183 VEKASVDEVFIDLSPLVYGVLLR----RYPELRN------GPDGDDRVASLPRPPTTALE 232
Query: 75 W-LGQVYSDTDTSLME-NTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W G D D + E + D+ ++A I IV +R V + CSAGIA NK+
Sbjct: 233 WNQGDCLVDLDENETEVDDPDWDDVAMLIGSDIVRAVRTVVWDNLSYTCSAGIAKNKM 290
>gi|346977255|gb|EGY20707.1| sister chromatid cohesion protein Eso1 [Verticillium dahliae
VdLs.17]
Length = 660
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 20/138 (14%)
Query: 1 YRNAGREVIAVLSEF--SNI--VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R ++A++ E S++ VE+ASIDE + DL+ VH SI +L+N
Sbjct: 140 YRLQSRRILALIKETLPSDLQKVEKASIDEVFCDLSAHVH----SILLERFPELNNP--- 192
Query: 57 GFGPDNNDEDAR----KAGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAA 110
P +D R ++W D D D+ ++AI I+ +RA
Sbjct: 193 ---PPYDDPTERLPRPPVVALDWQADALIDLDEDAENQDPDWDDVAILIGSEIIRGVRAR 249
Query: 111 VLSKTQFHCSAGIAHNKV 128
+ + CSAGIA+NK+
Sbjct: 250 IHEVLHYTCSAGIANNKM 267
>gi|398311332|ref|ZP_10514806.1| DNA polymerase IV [Bacillus mojavensis RO-H-1]
Length = 414
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR++ R + ++L E++N+VE SIDE Y+D+TD + R
Sbjct: 84 YRSSSRAMFSILREYTNLVEPVSIDEGYMDMTDTPYSR 121
>gi|238505178|ref|XP_002383818.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
flavus NRRL3357]
gi|220689932|gb|EED46282.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
flavus NRRL3357]
Length = 673
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR----KAGVME 74
VE+AS+DE +IDL+ +V+ + +L N GPD +D A +E
Sbjct: 183 VEKASVDEVFIDLSPLVYGVLLR----RYPELRN------GPDGDDRVASLPRPPTTALE 232
Query: 75 W-LGQVYSDTDTSLME-NTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W G D D + E + D+ ++A I IV +R V + CSAGIA NK+
Sbjct: 233 WNQGDCLVDLDENETEVDDPDWDDVAMLIGSDIVRAVRTVVWDNLSYTCSAGIAKNKM 290
>gi|396501078|ref|XP_003845891.1| hypothetical protein LEMA_P011990.1 [Leptosphaeria maculans JN3]
gi|312222472|emb|CBY02412.1| hypothetical protein LEMA_P011990.1 [Leptosphaeria maculans JN3]
Length = 731
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIA----VLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR A R+++ L E VE+ASIDE ++DL+ VH + L + +
Sbjct: 143 YRQASRKILQCIKEALPEKEQRVEKASIDEVFMDLSAQVH-----------TILLDRYPE 191
Query: 57 GFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTE-DFQE--LAIAGVIVEEIR 108
GP ++ + ++W +T E+ + D+ + + IA IV E+R
Sbjct: 192 LRGPAPYEDPTERLPKVPTTALDWAADALVETGEEDGEDADPDWDDVCMVIASEIVREVR 251
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
+ + CSAG+A NK+
Sbjct: 252 RHIKDTLGYTCSAGVARNKM 271
>gi|281351226|gb|EFB26810.1| hypothetical protein PANDA_002636 [Ailuropoda melanoleuca]
Length = 701
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + S L+ +
Sbjct: 88 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSALTVS------- 140
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 141 ----------------GHVYNNQYINLHDIVH--IRLLVGSQIAAEMREAMYNQLGLTGC 182
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 183 AGVASNKL 190
>gi|242277745|ref|YP_002989874.1| DNA-directed DNA polymerase [Desulfovibrio salexigens DSM 2638]
gi|242120639|gb|ACS78335.1| DNA-directed DNA polymerase [Desulfovibrio salexigens DSM 2638]
Length = 389
Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y+ R+V+A LS +S IVE+ASIDEAYID+T
Sbjct: 79 YKEISRKVMAALSNYSPIVEQASIDEAYIDIT 110
>gi|302837361|ref|XP_002950240.1| hypothetical protein VOLCADRAFT_59985 [Volvox carteri f.
nagariensis]
gi|300264713|gb|EFJ48908.1| hypothetical protein VOLCADRAFT_59985 [Volvox carteri f.
nagariensis]
Length = 198
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 31/128 (24%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR A + + AVLS + E+ +DE ++D+T+V G +AA + N + G
Sbjct: 58 YRQASKSIHAVLSRYGP-AEKLGMDETFVDVTEVR-------GAVAARGVGNGYSSG--- 106
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+ AGV W Q L + ++ E R AV S+T F S
Sbjct: 107 --AAVGVQSAGVESWQ------------------QLLTVGSMVAAEARLAVRSETGFRSS 146
Query: 121 AGIAHNKV 128
AGI+ NK+
Sbjct: 147 AGISSNKM 154
>gi|167522010|ref|XP_001745343.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776301|gb|EDQ89921.1| predicted protein [Monosiga brevicollis MX1]
Length = 456
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
Y A R++ AV++++ S+DEAY+D+TD M + +QL V P
Sbjct: 162 YEAASRQLQAVMAQYDPNFRSVSLDEAYLDITDY----MARLTPGDVAQLPPLTTVADPP 217
Query: 61 ---DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQF 117
+ N D+ K G+ TD++ N + A+A +V ++R + TQ
Sbjct: 218 LVQEANSADS-KPGMA---------TDSAGARNLTTLEGRALAARVVHQMRTRMHETTQL 267
Query: 118 HCSAGIAHNKV 128
SAGIA N++
Sbjct: 268 TVSAGIACNRM 278
>gi|307203609|gb|EFN82638.1| DNA polymerase iota [Harpegnathos saltator]
Length = 581
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR+ ++ +L +F+ +VER D+ ++D++ VV + +K P
Sbjct: 88 YRHYSTKISDILHQFTPLVERLGFDDNFLDVSLVVEKHLK-------------------P 128
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTED------FQELAIAGVIVEEIRAAVLSK 114
N+ E M+ ++ ++ + + +E+ L IA + EIR + +
Sbjct: 129 QNDSELDMSGSSMD---EILKESVSKIFGPSEEECPCGCHVRLIIASKLAAEIRNRIFQE 185
Query: 115 TQFHCSAGIAHNKV 128
CS GIAHNK+
Sbjct: 186 LHLTCSVGIAHNKL 199
>gi|209863006|ref|NP_001129562.1| DNA polymerase iota isoform 1 [Mus musculus]
gi|51895887|gb|AAH82278.1| Poli protein [Mus musculus]
Length = 674
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + + ++ + V
Sbjct: 59 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSEEVPSVTV----- 110
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 111 ---------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMREAMYNQLGLTGC 153
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 154 AGVAPNKL 161
>gi|45738076|gb|AAS75835.1| DNA polymerase iota [Mus musculus]
Length = 717
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + + ++ + V
Sbjct: 102 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSEEVPSVTV----- 153
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 154 ---------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMREAMYNQLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVAPNKL 204
>gi|74208215|dbj|BAE26322.1| unnamed protein product [Mus musculus]
Length = 717
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + + ++ + V
Sbjct: 102 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSEEVPSVTV----- 153
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 154 ---------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMREAMYNQLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVAPNKL 204
>gi|59798311|sp|Q6R3M4.1|POLI_MOUSE RecName: Full=DNA polymerase iota; AltName: Full=Rad30 homolog B
gi|45738074|gb|AAS75834.1| DNA polymerase iota [Mus musculus]
Length = 717
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + + ++ + V
Sbjct: 102 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSEEVPSVTV----- 153
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 154 ---------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMREAMYNQLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVAPNKL 204
>gi|350640295|gb|AEQ34093.1| DNA polymerase iota [Mus musculus]
gi|350640301|gb|AEQ34096.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + + ++ + V
Sbjct: 122 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSEEVPSVTV----- 173
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 174 ---------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMREAMYNQLGLTGC 216
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 217 AGVAPNKL 224
>gi|350640291|gb|AEQ34091.1| DNA polymerase iota [Mus musculus]
gi|350640303|gb|AEQ34097.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + + ++ + V
Sbjct: 122 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSEEVPSVTV----- 173
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 174 ---------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMREAMYNQLGLTGC 216
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 217 AGVAPNKL 224
>gi|226958460|ref|NP_036102.2| DNA polymerase iota isoform 2 [Mus musculus]
gi|350640293|gb|AEQ34092.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + + ++ + V
Sbjct: 122 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSEEVPSVTV----- 173
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 174 ---------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMREAMYNQLGLTGC 216
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 217 AGVAPNKL 224
>gi|148677620|gb|EDL09567.1| polymerase (DNA directed), iota, isoform CRA_a [Mus musculus]
gi|148677623|gb|EDL09570.1| polymerase (DNA directed), iota, isoform CRA_a [Mus musculus]
Length = 679
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + + ++ + V
Sbjct: 64 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSEEVPSVTV----- 115
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 116 ---------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMREAMYNQLGLTGC 158
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 159 AGVAPNKL 166
>gi|5739300|gb|AAD50424.1|AF151691_1 DNA polymerase iota [Mus musculus]
Length = 717
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + + ++ + V
Sbjct: 102 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSEEVPSVTV----- 153
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 154 ---------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMREAMYNQLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVAPNKL 204
>gi|359318428|ref|XP_003432548.2| PREDICTED: DNA polymerase iota [Canis lupus familiaris]
Length = 763
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + S L+ +
Sbjct: 149 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSALTVS------- 201
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 202 ----------------GHVYNNQYINLHDILH--IRLLVGSQIAAEMREAMYNQLGLTGC 243
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 244 AGVASNKL 251
>gi|350640297|gb|AEQ34094.1| DNA polymerase iota [Mus musculus]
gi|350640305|gb|AEQ34098.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + + ++ + V
Sbjct: 122 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSEEVPSVTV----- 173
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 174 ---------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMREAMYNQLGLTGC 216
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 217 AGVAPNKL 224
>gi|431896181|gb|ELK05597.1| DNA polymerase iota [Pteropus alecto]
Length = 681
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + S L+ +
Sbjct: 70 YREMSYKVTELLEEFSPLVERLGFDENFVDLTEMVEKRLQQLHSDEISALTVS------- 122
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G +Y+ + S+ ++ L I I E+R A+ ++
Sbjct: 123 ----------------GHIYN--NQSINQHDILHIRLLIGSQIAAEMREAMYNQLGLTGC 164
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 165 AGVASNKL 172
>gi|385265382|ref|ZP_10043469.1| DNA polymerase IV [Bacillus sp. 5B6]
gi|385149878|gb|EIF13815.1| DNA polymerase IV [Bacillus sp. 5B6]
Length = 422
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR++ +E+ ++L E++++VE SIDE Y+D+TD H
Sbjct: 92 YRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPH 127
>gi|145502699|ref|XP_001437327.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404477|emb|CAK69930.1| unnamed protein product [Paramecium tetraurelia]
Length = 509
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 32/128 (25%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR + + A++ +F VE+ DE YI +++ E+++
Sbjct: 108 YREESKLIFAIIKQFCGCVEKGGTDECYIQVSENELEKIEP------------------- 148
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
E++G + + +D Q + A ++ ++IR AV +TQ+ CS
Sbjct: 149 ------------HEFIGNLMCAIPSDYQLTEQDIQIMK-ASILCQQIRDAVYKETQYKCS 195
Query: 121 AGIAHNKV 128
AGI+ NK+
Sbjct: 196 AGISFNKM 203
>gi|351700533|gb|EHB03452.1| DNA polymerase iota [Heterocephalus glaber]
Length = 696
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 29/130 (22%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI--GHIAASQLSNTFVVGF 58
YR +V +L EF+ +VER DE ++DLT +V +R++ + +AA +S
Sbjct: 102 YREMSYKVTELLGEFTPLVERLGFDENFVDLTQMVEKRLQQLQSDELAAVTVS------- 154
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
G +Y++ L + L I I E+R A+ ++
Sbjct: 155 ------------------GHLYNNQSVDLHDTMH--VRLLIGSQIAAEMRKAMYNQLGLT 194
Query: 119 CSAGIAHNKV 128
AGIA NK+
Sbjct: 195 GCAGIASNKL 204
>gi|308174178|ref|YP_003920883.1| translesion synthesis (TLS-) DNA polymerase Y1 [Bacillus
amyloliquefaciens DSM 7]
gi|384160034|ref|YP_005542107.1| DNA polymerase IV [Bacillus amyloliquefaciens TA208]
gi|384164958|ref|YP_005546337.1| translesion synthesis (TLS-) DNA polymerase Y1 [Bacillus
amyloliquefaciens LL3]
gi|384169098|ref|YP_005550476.1| DNA polymerase IV [Bacillus amyloliquefaciens XH7]
gi|307607042|emb|CBI43413.1| translesion synthesis (TLS-) DNA polymerase Y1 [Bacillus
amyloliquefaciens DSM 7]
gi|328554122|gb|AEB24614.1| DNA polymerase IV [Bacillus amyloliquefaciens TA208]
gi|328912513|gb|AEB64109.1| translesion synthesis (TLS-) DNA polymerase Y1 [Bacillus
amyloliquefaciens LL3]
gi|341828377|gb|AEK89628.1| DNA polymerase IV [Bacillus amyloliquefaciens XH7]
Length = 422
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR++ +E+ ++L E++++VE SIDE Y+D+TD H
Sbjct: 92 YRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPH 127
>gi|384266001|ref|YP_005421708.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387899020|ref|YP_006329316.1| DNA polymerase IV [Bacillus amyloliquefaciens Y2]
gi|380499354|emb|CCG50392.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387173130|gb|AFJ62591.1| DNA polymerase IV [Bacillus amyloliquefaciens Y2]
Length = 422
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR++ +E+ ++L E++++VE SIDE Y+D+TD H
Sbjct: 92 YRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPH 127
>gi|375362921|ref|YP_005130960.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|371568915|emb|CCF05765.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
Length = 422
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR++ +E+ ++L E++++VE SIDE Y+D+TD H
Sbjct: 92 YRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPH 127
>gi|453085241|gb|EMF13284.1| DNA/RNA polymerase, partial [Mycosphaerella populorum SO2202]
Length = 696
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 27/122 (22%)
Query: 19 VERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK----- 69
VE+ASIDE ++DL+ VH ER + GP D+ +
Sbjct: 150 VEKASIDEVFLDLSAQVHGILLERYPGLK---------------GPPPYDDPSEPLPKPP 194
Query: 70 AGVMEWLGQVYSDTDTSLMENTE-DFQELAI--AGVIVEEIRAAVLSKTQFHCSAGIAHN 126
V++W D D E + D+ ++ + A IV ++RAAV + + SAGI+ N
Sbjct: 195 TTVLDWKADALVDLDEKYTEEDDPDWDDIVVLLASEIVRDVRAAVFKQLNYTMSAGISRN 254
Query: 127 KV 128
K+
Sbjct: 255 KM 256
>gi|407979769|ref|ZP_11160577.1| DNA polymerase IV [Bacillus sp. HYC-10]
gi|407413594|gb|EKF35291.1| DNA polymerase IV [Bacillus sp. HYC-10]
Length = 418
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR++ +E+ +L E+S++VE SIDE YIDLTD
Sbjct: 87 YRSSSQEMFTILREYSDLVEPVSIDEGYIDLTD 119
>gi|426253840|ref|XP_004020599.1| PREDICTED: DNA polymerase iota isoform 1 [Ovis aries]
Length = 750
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V G
Sbjct: 139 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLE---QLQSDELSALTVSGHVY 195
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+N + R DT + L + I E+R A+ +
Sbjct: 196 NNQSVNPR---------------DTLHI-------RLLVGSHIAAEMREAMYQQLGLTGC 233
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 234 AGVASNKL 241
>gi|421731096|ref|ZP_16170222.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|407075250|gb|EKE48237.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 414
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR++ +E+ ++L E++++VE SIDE Y+D+TD H
Sbjct: 84 YRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPH 119
>gi|451346408|ref|YP_007445039.1| DNA polymerase IV [Bacillus amyloliquefaciens IT-45]
gi|449850166|gb|AGF27158.1| DNA polymerase IV [Bacillus amyloliquefaciens IT-45]
Length = 414
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR++ +E+ ++L E++++VE SIDE Y+D+TD H
Sbjct: 84 YRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPH 119
>gi|394992224|ref|ZP_10385014.1| DNA polymerase IV [Bacillus sp. 916]
gi|393806954|gb|EJD68283.1| DNA polymerase IV [Bacillus sp. 916]
Length = 414
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR++ +E+ ++L E++++VE SIDE Y+D+TD H
Sbjct: 84 YRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPH 119
>gi|154686649|ref|YP_001421810.1| DNA polymerase IV [Bacillus amyloliquefaciens FZB42]
gi|429505792|ref|YP_007186976.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|452856156|ref|YP_007497839.1| DNA-damage lesion bypass DNA polymerase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|189027657|sp|A7Z6F3.1|DPO4_BACA2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|154352500|gb|ABS74579.1| YqjH [Bacillus amyloliquefaciens FZB42]
gi|429487382|gb|AFZ91306.1| DNA polymerase IV [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|452080416|emb|CCP22179.1| DNA-damage lesion bypass DNA polymerase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 414
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR++ +E+ ++L E++++VE SIDE Y+D+TD H
Sbjct: 84 YRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPH 119
>gi|395830769|ref|XP_003788490.1| PREDICTED: DNA polymerase iota isoform 1 [Otolemur garnettii]
Length = 737
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 124 YREMSYKVTELLKEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVSVS---- 176
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 177 ----------------GHVYNNQCINLDDILH--VRLLVGSQIAAEMREAMYNQLGLTGC 218
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 219 AGVASNKL 226
>gi|52080931|ref|YP_079722.1| DNA polymerase IV [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319645113|ref|ZP_07999346.1| YqjH protein [Bacillus sp. BT1B_CT2]
gi|404489813|ref|YP_006713919.1| DNA polymerase IV [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423682900|ref|ZP_17657739.1| DNA polymerase IV [Bacillus licheniformis WX-02]
gi|52004142|gb|AAU24084.1| UMUC-like DNA-repair protein DinB1 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348808|gb|AAU41442.1| DNA polymerase 4 [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317392922|gb|EFV73716.1| YqjH protein [Bacillus sp. BT1B_CT2]
gi|383439674|gb|EID47449.1| DNA polymerase IV [Bacillus licheniformis WX-02]
Length = 418
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR++ RE+ VL E++++VE SIDE Y+DLTD
Sbjct: 87 YRSSSREMFQVLREYTDLVEPVSIDEGYMDLTD 119
>gi|330916199|ref|XP_003297332.1| hypothetical protein PTT_07693 [Pyrenophora teres f. teres 0-1]
gi|311330060|gb|EFQ94574.1| hypothetical protein PTT_07693 [Pyrenophora teres f. teres 0-1]
Length = 715
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIA----VLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++ +L E VE+ASIDE ++DL+ VH + L +
Sbjct: 142 YRTESRKILKCIKEILPEKDQRVEKASIDEVFMDLSAQVH-----------TILLERYPE 190
Query: 57 GFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTE-DFQE--LAIAGVIVEEIR 108
GP D+ + V++W +T E+ + D+ + + IA IV ++R
Sbjct: 191 LRGPAPYDDPTERLPKVPTTVLDWAADALVETGEEDGEDRDPDWDDVCMVIASEIVRDVR 250
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
+ + CS GIA NK+
Sbjct: 251 KHIKDTLGYTCSGGIARNKM 270
>gi|452974954|gb|EME74773.1| DNA polymerase IV [Bacillus sonorensis L12]
Length = 418
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR++ RE+ VL E++++VE SIDE Y+DLTD
Sbjct: 87 YRSSSREMFQVLREYTDLVEPVSIDEGYMDLTD 119
>gi|320163305|gb|EFW40204.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 624
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 21/111 (18%)
Query: 19 VERASIDEAYIDLT-DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG 77
VE ASIDE Y+DLT H +++I A + SN ++ +D + GV+
Sbjct: 114 VEVASIDEGYLDLTARAKHLMVQTI----AQEASNERLL-HRQRYDDGEQVHGGVLP--- 165
Query: 78 QVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
S ++L+E V++ E+RAA+LS CSAGIAHNK+
Sbjct: 166 ---SGGPSNLLE---------AGAVLIAELRAAILSVLSLECSAGIAHNKL 204
>gi|403268066|ref|XP_003926108.1| PREDICTED: DNA polymerase iota isoform 2 [Saimiri boliviensis
boliviensis]
Length = 659
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V G
Sbjct: 125 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLR---QLQSDELSAVTVSGHVY 181
Query: 61 DNNDEDARKAGVMEWLG 77
+N + +E LG
Sbjct: 182 NNQCIGYKTTKCLEVLG 198
>gi|115400311|ref|XP_001215744.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191410|gb|EAU33110.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1077
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 18/118 (15%)
Query: 19 VERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVME 74
+E+ASIDE +IDL+ +V+ +R + AA Q + F P +E
Sbjct: 594 LEKASIDEVFIDLSPLVYGVLLQRYPELR--AAPQGDDKFASLPRPPTT--------ALE 643
Query: 75 WLGQ-VYSDTDTSLME-NTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W + D D + E + D+ ++A + +V +R A+ +K Q+ CSAGIA NK+
Sbjct: 644 WNAEDCLVDLDKTETEVDDPDWDDIAMLVGSEVVRSLRTALWNKLQYTCSAGIARNKM 701
>gi|426253842|ref|XP_004020600.1| PREDICTED: DNA polymerase iota isoform 2 [Ovis aries]
Length = 734
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V G
Sbjct: 123 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLE---QLQSDELSALTVSGHVY 179
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+N + R DT + L + I E+R A+ +
Sbjct: 180 NNQSVNPR---------------DTLHI-------RLLVGSHIAAEMREAMYQQLGLTGC 217
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 218 AGVASNKL 225
>gi|441602786|ref|XP_003267571.2| PREDICTED: DNA polymerase iota isoform 1 [Nomascus leucogenys]
Length = 715
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 102 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 154
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ +
Sbjct: 155 ----------------GHVYNNQSINLHDILH--IRLLVGSQIAAEMREAMHNHLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVASNKL 204
>gi|420376700|ref|ZP_14876421.1| DNA polymerase IV [Shigella flexneri 1235-66]
gi|391301657|gb|EIQ59540.1| DNA polymerase IV [Shigella flexneri 1235-66]
Length = 351
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R++ A+ S +++++E S+DEAY+D+TD +H
Sbjct: 79 YKEASRQIQAIFSRYTSLIEPLSLDEAYLDVTDSIH 114
>gi|255955947|ref|XP_002568726.1| Pc21g17280 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590437|emb|CAP96625.1| Pc21g17280 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 646
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 14 EFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDED--ARKAG 71
E S ++E+ASIDE +IDL+ +++ A Q +G +N D +
Sbjct: 166 ELSAVLEKASIDEVFIDLSPLIYR--------ALLQRYPELRMGTQDENRDAELPTPPTT 217
Query: 72 VMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
++W D D E + D+ ++ I IV +R V K + CSAG+ NK+
Sbjct: 218 ALQWDTDCLVDLDKHETEEDDPDWDDIVMLIGSEIVRSVRNTVWEKLSYTCSAGLGRNKM 277
>gi|367001979|ref|XP_003685724.1| hypothetical protein TPHA_0E01980 [Tetrapisispora phaffii CBS 4417]
gi|357524023|emb|CCE63290.1| hypothetical protein TPHA_0E01980 [Tetrapisispora phaffii CBS 4417]
Length = 641
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIA--------ASQLSN 52
YR GR++ ++ E+ ++VE AS DE ++DL+ +V +++ I + + +
Sbjct: 132 YRREGRKIFKLMKEWCDLVEIASSDEGFLDLSRLVLQKLLFDEDITNFNDDTTQSRTIQD 191
Query: 53 TFVVGFGPDNNDED-----ARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEI 107
FV G D N ED + +++ G +Y+ + +E+ +D L + +I+ E+
Sbjct: 192 MFVNG---DYNLEDNLPPVPKYLKKLKYEGILYAGDEGDNIEDWDDLF-LCLGSIIMSEL 247
Query: 108 RAAVLSKTQFHCSAGIAHNK 127
R + + + S GIA K
Sbjct: 248 RNEIETTLGYTTSCGIARTK 267
>gi|395517555|ref|XP_003762941.1| PREDICTED: DNA polymerase iota-like, partial [Sarcophilus harrisii]
Length = 338
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++D+T V +R+ +
Sbjct: 140 YREMSYKVTELLEEFSPVVERLGFDENFVDITQTVEKRLHQL------------------ 181
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+D+ + V+ G VY++ +L N L I I E+R A+ ++
Sbjct: 182 -QSDDYS----VVAVCGHVYNNQSVNL--NDILHVRLLIGSQIAAEMREAIFNQLGLTGC 234
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 235 AGVASNKL 242
>gi|241951166|ref|XP_002418305.1| DNA polymerase eta, putative [Candida dubliniensis CD36]
gi|223641644|emb|CAX43605.1| DNA polymerase eta, putative [Candida dubliniensis CD36]
Length = 642
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 28/146 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR R+++ ++S+ ++ E+AS+DE YIDL +++R+ + QLS +
Sbjct: 144 YRRESRKILRIISKSFDLTEKASVDECYIDLGREIYKRLIDL----FPQLSRS-----SR 194
Query: 61 DNNDEDARKAGV--------MEWLGQVYSDTDTSLMEN---------TEDFQELA--IAG 101
DN + + ++W G++ + M+N ED+ ++ I
Sbjct: 195 DNPENGYANLPLIPSILPLDLKWEGEIINSEKEKTMDNGNSSPPPPVIEDWDDICFIIGS 254
Query: 102 VIVEEIRAAVLSKTQFHCSAGIAHNK 127
I+ E+R + ++ + SAG+A K
Sbjct: 255 QILLEVRKDIFAELGYTTSAGLARTK 280
>gi|62955641|ref|NP_001017834.1| DNA polymerase iota [Danio rerio]
gi|62202162|gb|AAH92781.1| Zgc:110185 [Danio rerio]
gi|182890874|gb|AAI65649.1| Zgc:110185 protein [Danio rerio]
Length = 710
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 29/128 (22%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L + +VER DE ++D+T++V +R+K +++S+
Sbjct: 111 YREMSYKVTELLMSYCPLVERLGFDENFMDVTEMVEKRIKE------TRISD-------- 156
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+ + G VY+ S++ + E+ + LA+ VI E+R A+ S
Sbjct: 157 ------------LSFNGHVYNHE--SVVVDEENIR-LAVGSVIAAEMRQAIFSTLGLTGC 201
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 202 AGVASNKL 209
>gi|225683428|gb|EEH21712.1| sister chromatid cohesion protein Eso1 [Paracoccidioides
brasiliensis Pb03]
Length = 681
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 20/119 (16%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAG----VME 74
VE+A IDE ++DL+ +V+E + L ++ G D + R G V+E
Sbjct: 171 VEKAGIDEVFVDLSALVYETL----------LEWYPMLREGEVELDVNERLPGPPTTVLE 220
Query: 75 WLGQVYSDTDTSLMENTEDFQE-----LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W G+ D + E ED + + + IV +RAA+ + ++ CSAGIA NK+
Sbjct: 221 W-GKEDMLVDLDVGEAEEDDPDWDDMCMLVGADIVRSVRAAIWERLKYTCSAGIARNKM 278
>gi|74202822|dbj|BAE37492.1| unnamed protein product [Mus musculus]
Length = 267
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ +
Sbjct: 101 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQQL------------------ 142
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+ + + G VY++ +L + + L + I E+R A+ ++
Sbjct: 143 -----PSEEVPSVTVFGHVYNNQSVNL--HNIMHRRLVVGSQIAAEMREAMYNQLGLTGC 195
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 196 AGVAPNKL 203
>gi|145237696|ref|XP_001391495.1| DNA polymerase eta [Aspergillus niger CBS 513.88]
gi|134075969|emb|CAK48163.1| unnamed protein product [Aspergillus niger]
gi|350635582|gb|EHA23943.1| hypothetical protein ASPNIDRAFT_48454 [Aspergillus niger ATCC 1015]
Length = 670
Score = 43.1 bits (100), Expect = 0.032, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQ 78
+E+AS+DE +IDL+ +VH + ++L V P +EW +
Sbjct: 182 LEKASVDEVFIDLSSLVHGVLLQRYPELRAELQGDDRVTPLP------VPPTTALEWNSE 235
Query: 79 -VYSDTDTSLME-NTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
D D + E + D+ ++A I IV +RAAV + Q+ CSAG+A NK+
Sbjct: 236 DCLVDLDENETEVDDPDWDDIAMLIGSEIVRSVRAAVWDRLQYTCSAGVAKNKM 289
>gi|427400155|ref|ZP_18891393.1| hypothetical protein HMPREF9710_00989 [Massilia timonae CCUG 45783]
gi|425720895|gb|EKU83810.1| hypothetical protein HMPREF9710_00989 [Massilia timonae CCUG 45783]
Length = 341
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER--------------MKSIGHIA 46
YR A R+++A+ +++ IVE S+DEAY+D+TD H + +++G A
Sbjct: 62 YRIASRQIMAIYQDYTEIVEPLSLDEAYLDVTDSPHCKGSATLIAQEIRRRIFETVGITA 121
Query: 47 ASQLS-NTFVVGFGPDNNDEDA 67
++ ++ N FV D N D
Sbjct: 122 SAGVAPNKFVAKIASDWNKPDG 143
>gi|46130620|ref|XP_389090.1| hypothetical protein FG08914.1 [Gibberella zeae PH-1]
Length = 684
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 22/139 (15%)
Query: 1 YRNAGREVIAVLSEF----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++A + + VE+ASIDE ++DL+ V +SI +LSN
Sbjct: 142 YRLQSRKILACIKDALPADVQKVEKASIDEVFLDLSSQV----RSILLERFPELSN---- 193
Query: 57 GFGPDNNDEDARKAGV-----MEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRA 109
P D+ K + ++W D + D+ ++AI IV ++R+
Sbjct: 194 ---PPPYDDPTEKLPLPSIAALDWQTDALIDLNEEQEAIDPDWDDVAILIGSEIVRKVRS 250
Query: 110 AVLSKTQFHCSAGIAHNKV 128
V K + CSAG+A NK+
Sbjct: 251 EVRQKLGYTCSAGVASNKL 269
>gi|418032444|ref|ZP_12670927.1| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. SC-8]
gi|351471307|gb|EHA31428.1| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. SC-8]
Length = 428
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 98 YRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 130
>gi|189192050|ref|XP_001932364.1| sister chromatid cohesion protein Eso1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187973970|gb|EDU41469.1| sister chromatid cohesion protein Eso1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 714
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIAVLSEF----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++ + E VE+ASIDE ++DL+ VH + L +
Sbjct: 142 YRQESRKILKCIKEILPDKDQRVEKASIDEVFMDLSAQVH-----------TILLERYPE 190
Query: 57 GFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTE-DFQE--LAIAGVIVEEIR 108
GP D+ + V++W +T E+ + D+ + + IA IV ++R
Sbjct: 191 LRGPAPYDDPTERLPKVPTTVLDWAADALVETGEEDGEDRDPDWDDVCMVIASEIVRDVR 250
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
+ + CS GIA NK+
Sbjct: 251 KHIKDTLGYTCSGGIARNKM 270
>gi|302921584|ref|XP_003053312.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734252|gb|EEU47599.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 683
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 20/138 (14%)
Query: 1 YRNAGREVIAVLSEFS----NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++A + + VE+ASIDE ++DL+ +H SI +L N
Sbjct: 144 YRLQSRKILATIKDALPHDLQKVEKASIDEVFLDLSSQIH----SILLERFPELKNP--- 196
Query: 57 GFGPDNNDEDAR----KAGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRAA 110
P +D R ++W D D D+ ++AI IV ++RA
Sbjct: 197 ---PPYDDPTERLPLPSIVALDWQTDALVDLDEEQETIDPDWDDVAILIGSEIVRDVRAK 253
Query: 111 VLSKTQFHCSAGIAHNKV 128
V + CSAG+A NK+
Sbjct: 254 VRQDLGYTCSAGVASNKL 271
>gi|340975581|gb|EGS22696.1| DNA polymerase eta-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 507
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 26/143 (18%)
Query: 1 YRNAGREVIAVLSEFS----NIVERASIDEAYIDLTDVVH--------ERMKSIGHIAAS 48
YR+ R+++ ++ E VE+ASIDE ++DL+ VH E + H S
Sbjct: 157 YRSESRKILVLIKELLPHGLQRVEKASIDEVFLDLSAHVHAILLERFPELLSPQPHRDLS 216
Query: 49 QLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE-DFQELA--IAGVIVE 105
+L P +D D + +++ D+D + + D+ ++A +A IV
Sbjct: 217 ELLPL------PPISDLDWQADTLVD-----AGDSDNKTLAILDPDWDDVAFYVASGIVR 265
Query: 106 EIRAAVLSKTQFHCSAGIAHNKV 128
+R+++ K + CSAGIA NK+
Sbjct: 266 HLRSSIKEKLGYTCSAGIARNKL 288
>gi|194904125|ref|XP_001981005.1| GG23702 [Drosophila erecta]
gi|190652708|gb|EDV49963.1| GG23702 [Drosophila erecta]
Length = 737
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 24/128 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR + + +L ++ +VE+ DE Y+D+T +V R H+A +QL +
Sbjct: 89 YRQMSQRIFDLLLNYTPLVEKLGFDENYMDVTALVELRQ---AHVAEAQLKPPVGHTYPA 145
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
D G S+ D Q LAI + +EIR + + C
Sbjct: 146 D---------------GTPLSNCDCGCA------QRLAIGTRVAQEIREELKLRLGITCC 184
Query: 121 AGIAHNKV 128
AGIA+NK+
Sbjct: 185 AGIAYNKL 192
>gi|1303959|dbj|BAA12614.1| YqjH [Bacillus subtilis]
Length = 414
Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 84 YRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>gi|430759148|ref|YP_007209072.1| DNA polymerase IV 1 [Bacillus subtilis subsp. subtilis str. BSP1]
gi|430023668|gb|AGA24274.1| DNA polymerase IV 1 [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 414
Score = 42.7 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 84 YRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>gi|428279867|ref|YP_005561602.1| DNA polymerase IV [Bacillus subtilis subsp. natto BEST195]
gi|291484824|dbj|BAI85899.1| DNA polymerase IV [Bacillus subtilis subsp. natto BEST195]
Length = 414
Score = 42.7 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 84 YRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>gi|221310306|ref|ZP_03592153.1| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. 168]
gi|221314630|ref|ZP_03596435.1| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221319553|ref|ZP_03600847.1| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. JH642]
gi|221323829|ref|ZP_03605123.1| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. SMY]
gi|255767518|ref|NP_390268.2| DNA polymerase IV [Bacillus subtilis subsp. subtilis str. 168]
gi|321311867|ref|YP_004204154.1| DNA polymerase IV [Bacillus subtilis BSn5]
gi|402776649|ref|YP_006630593.1| DNA-damage lesion bypass DNA polymerase [Bacillus subtilis QB928]
gi|452915520|ref|ZP_21964146.1| impB/mucB/samB family protein [Bacillus subtilis MB73/2]
gi|251757260|sp|P54545.2|DPO41_BACSU RecName: Full=DNA polymerase IV 1; Short=Pol IV 1
gi|225185146|emb|CAB14319.2| DNA-damage lesion bypass DNA polymerase [Bacillus subtilis subsp.
subtilis str. 168]
gi|320018141|gb|ADV93127.1| DNA polymerase IV [Bacillus subtilis BSn5]
gi|402481829|gb|AFQ58338.1| DNA-damage lesion bypass DNA polymerase [Bacillus subtilis QB928]
gi|407959632|dbj|BAM52872.1| DNA polymerase IV [Bacillus subtilis BEST7613]
gi|407965207|dbj|BAM58446.1| DNA polymerase IV [Bacillus subtilis BEST7003]
gi|452115868|gb|EME06264.1| impB/mucB/samB family protein [Bacillus subtilis MB73/2]
Length = 414
Score = 42.7 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 84 YRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>gi|242790335|ref|XP_002481538.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
stipitatus ATCC 10500]
gi|218718126|gb|EED17546.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
stipitatus ATCC 10500]
Length = 658
Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 20/119 (16%)
Query: 19 VERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVME 74
VE+ASIDE +IDL+ +V+ +R + ++ T + + +E
Sbjct: 179 VEKASIDEVFIDLSSLVYAILYQRYPELRKPHSTSDKTTRL----------PSPPTTALE 228
Query: 75 WL---GQVYSDTDTSLMENTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W G V D + E+ D+ ++A I I+ IR+A+ K + CSAGIA NK+
Sbjct: 229 WSSEDGLVDLD-EQETEEDDPDWDDVAMLIGAEIIRSIRSAIWDKLSYTCSAGIARNKM 286
>gi|395830771|ref|XP_003788491.1| PREDICTED: DNA polymerase iota isoform 2 [Otolemur garnettii]
Length = 658
Score = 42.7 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V G
Sbjct: 124 YREMSYKVTELLKEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVSVSGHVY 180
Query: 61 DNNDEDARKAGVMEWLG 77
+N + +E LG
Sbjct: 181 NNQCIGYKTTKRLEALG 197
>gi|298710336|emb|CBJ31954.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 644
Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 23/129 (17%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR A ++A+ VERASIDEAY+DLT+ A++L G
Sbjct: 106 YRTASFAIMAIFQAHCRRVERASIDEAYLDLTE------------EAAKLCQEVEAG--- 150
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGV-IVEEIRAAVLSKTQFHC 119
N D + + G T ++ T F +AG + +R AV + F
Sbjct: 151 --NARDVADSPETDLQG-----TAGHRVDPTNAFDRALLAGARLTAAMRLAVEQELGFTV 203
Query: 120 SAGIAHNKV 128
SAGIA NKV
Sbjct: 204 SAGIASNKV 212
>gi|190345515|gb|EDK37413.2| hypothetical protein PGUG_01511 [Meyerozyma guilliermondii ATCC
6260]
Length = 673
Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM 39
YR R++I ++ + ++VE+AS+DE Y+DL VH+R+
Sbjct: 139 YRRESRKIIKIIKQHCDVVEKASVDECYMDLGREVHKRL 177
>gi|386758979|ref|YP_006232195.1| DNA polymerase IV [Bacillus sp. JS]
gi|384932261|gb|AFI28939.1| DNA polymerase IV [Bacillus sp. JS]
Length = 414
Score = 42.7 bits (99), Expect = 0.045, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 84 YRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>gi|295666590|ref|XP_002793845.1| DNA polymerase eta [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277498|gb|EEH33064.1| DNA polymerase eta [Paracoccidioides sp. 'lutzii' Pb01]
Length = 664
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 20/119 (16%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAG----VME 74
VE+A IDE ++DL+ +V+E + L ++ G D + R G V+E
Sbjct: 170 VEKAGIDEVFVDLSALVYETL----------LEWYPMLREGEVELDVNERLPGPPTTVLE 219
Query: 75 WLGQVYSDTDTSLMENTEDFQE-----LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W G+ D + E ED + + + IV +RAA+ + ++ CSAGIA NK+
Sbjct: 220 W-GKEDMLVDLDVGEAEEDDPDWDDMCMLVGADIVRSVRAAIWERLKYTCSAGIARNKM 277
>gi|452002715|gb|EMD95173.1| hypothetical protein COCHEDRAFT_1129437 [Cochliobolus
heterostrophus C5]
Length = 717
Score = 42.7 bits (99), Expect = 0.050, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIA----VLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++ +L E VE+ASIDE ++DL+ VH + L +
Sbjct: 142 YRKESRKILKCIKDMLPEKEQRVEKASIDEVFMDLSAQVH-----------TILLERYPE 190
Query: 57 GFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTE-DFQE--LAIAGVIVEEIR 108
GP D+ V++W +T E+ + D+ + +AIA IV ++R
Sbjct: 191 LRGPAPYDDPTEPLPKVPTTVLDWAADALVETGEEDGEDRDPDWDDVCMAIASEIVRDVR 250
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
+ + CS G+A NK+
Sbjct: 251 KHIKDALGYTCSGGVARNKM 270
>gi|398304553|ref|ZP_10508139.1| DNA polymerase IV [Bacillus vallismortis DV1-F-3]
Length = 414
Score = 42.7 bits (99), Expect = 0.052, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YRN+ R + +L E++++VE SIDE Y+D+TD +
Sbjct: 84 YRNSSRAMFNILREYTDLVEPVSIDEGYMDMTDTAY 119
>gi|304317842|ref|YP_003852987.1| DNA-directed DNA polymerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779344|gb|ADL69903.1| DNA-directed DNA polymerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 378
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR ++V +L E +NIVE SIDEAY+D+TD+
Sbjct: 78 YREVSKKVFDILYEITNIVEPLSIDEAYLDVTDI 111
>gi|293376588|ref|ZP_06622816.1| putative DNA polymerase IV [Turicibacter sanguinis PC909]
gi|292644814|gb|EFF62896.1| putative DNA polymerase IV [Turicibacter sanguinis PC909]
Length = 398
Score = 42.7 bits (99), Expect = 0.052, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR ++ I +L E+S +VE+ASIDEAY+D+T
Sbjct: 85 YRKISKQFIQILQEYSPLVEKASIDEAYVDVT 116
>gi|336264622|ref|XP_003347087.1| hypothetical protein SMAC_05386 [Sordaria macrospora k-hell]
gi|380093781|emb|CCC08745.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 672
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 1 YRNAGREVIAVLSE----FSNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSN 52
YR R ++A++ E VE+ASIDE ++DL+ VH ER + +
Sbjct: 142 YRLESRRILAIIKEELPPHLQKVEKASIDEVFMDLSAQVHAILLERFPELANPPPYDDPT 201
Query: 53 TFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
+ P D R +++ G+ + L + D + I IV ++R A+
Sbjct: 202 EMLPM--PSITALDWRADALVDLPGE-----NAELEDPDWDDVAILIGSEIVRKVRIAIK 254
Query: 113 SKTQFHCSAGIAHNKV 128
K + CSAG+A NK+
Sbjct: 255 DKLGYTCSAGVACNKL 270
>gi|237730217|ref|ZP_04560698.1| DNA polymerase IV [Citrobacter sp. 30_2]
gi|365104768|ref|ZP_09334160.1| DNA polymerase IV [Citrobacter freundii 4_7_47CFAA]
gi|226905756|gb|EEH91674.1| DNA polymerase IV [Citrobacter sp. 30_2]
gi|363643709|gb|EHL83013.1| DNA polymerase IV [Citrobacter freundii 4_7_47CFAA]
Length = 351
Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R++ A+ S +++++E S+DEAY+D+TD H
Sbjct: 79 YKEASRQIQAIFSRYTSLIEPLSLDEAYLDVTDSTH 114
>gi|395231474|ref|ZP_10409763.1| DNA polymerase IV [Citrobacter sp. A1]
gi|421845641|ref|ZP_16278794.1| DNA polymerase IV [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|424731297|ref|ZP_18159882.1| dna polymerase iv [Citrobacter sp. L17]
gi|394714777|gb|EJF20673.1| DNA polymerase IV [Citrobacter sp. A1]
gi|411773176|gb|EKS56747.1| DNA polymerase IV [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|422894271|gb|EKU34085.1| dna polymerase iv [Citrobacter sp. L17]
gi|455646713|gb|EMF25740.1| DNA polymerase IV [Citrobacter freundii GTC 09479]
Length = 351
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R++ A+ S +++++E S+DEAY+D+TD H
Sbjct: 79 YKEASRQIQAIFSRYTSLIEPLSLDEAYLDVTDSTH 114
>gi|389571750|ref|ZP_10161839.1| DNA polymerase IV [Bacillus sp. M 2-6]
gi|388428644|gb|EIL86440.1| DNA polymerase IV [Bacillus sp. M 2-6]
Length = 418
Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR++ +E+ +L E+S++VE SIDE YIDLT+
Sbjct: 87 YRSSSQEMFTILREYSDLVEPVSIDEGYIDLTN 119
>gi|325839389|ref|ZP_08166828.1| putative DNA polymerase IV [Turicibacter sp. HGF1]
gi|325490509|gb|EGC92825.1| putative DNA polymerase IV [Turicibacter sp. HGF1]
Length = 398
Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR ++ I +L E+S +VE+ASIDEAY+D+T
Sbjct: 85 YRKISKQFIQILQEYSPLVEKASIDEAYVDVT 116
>gi|326429234|gb|EGD74804.1| hypothetical protein PTSG_12528 [Salpingoeca sp. ATCC 50818]
Length = 984
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT-DVVHERMKSIGHIAASQLSNTFVVG-- 57
YR A R+++A+ +F + E+A +DEAY+D+T + V R + I + V G
Sbjct: 99 YRRASRDIMAIFEQF-GVCEKAGMDEAYLDVTKEAVRRREQCPTSIQQLMQAKYIVPGEF 157
Query: 58 ----FGPDNNDEDARKAGVM---EWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
F + D G + +G + +ED L + E+R A
Sbjct: 158 TFKVFCKEGATHDDLLLGSLASSRVIGFAHGLLGRGWKPTSEDDWLLVEGAAVAAELRVA 217
Query: 111 VLSKTQFHCSAGIAHNKV 128
V + + SAGI+H+K+
Sbjct: 218 VYERLGYVVSAGISHSKL 235
>gi|408392199|gb|EKJ71557.1| hypothetical protein FPSE_08196 [Fusarium pseudograminearum CS3096]
Length = 737
Score = 42.4 bits (98), Expect = 0.063, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 22/139 (15%)
Query: 1 YRNAGREVIAVLSEF----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++A + + VE+ASIDE ++DL+ +++SI +LSN
Sbjct: 195 YRLQSRKILACIKDALPADVQKVEKASIDEVFLDLS----SQVRSILLERFPELSN---- 246
Query: 57 GFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTEDFQELAI--AGVIVEEIRA 109
P D+ K ++W D + D+ ++AI IV ++R+
Sbjct: 247 ---PPPYDDPTEKLPLPSIAALDWQTDALIDLNEEQEAIDPDWDDVAILIGSEIVRKVRS 303
Query: 110 AVLSKTQFHCSAGIAHNKV 128
V K + CSAG+A NK+
Sbjct: 304 EVRQKLGYTCSAGVASNKL 322
>gi|291085833|ref|ZP_06354175.2| DNA polymerase IV [Citrobacter youngae ATCC 29220]
gi|291069981|gb|EFE08090.1| DNA polymerase IV [Citrobacter youngae ATCC 29220]
Length = 352
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R++ A+ S +++++E S+DEAY+D+TD H
Sbjct: 80 YKEASRQIQAIFSRYTSLIEPLSLDEAYLDVTDSAH 115
>gi|448513234|ref|XP_003866901.1| Rad32 protein [Candida orthopsilosis Co 90-125]
gi|380351239|emb|CCG21463.1| Rad32 protein [Candida orthopsilosis Co 90-125]
Length = 671
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVV 56
YR R++I ++ + VE+AS+DE+YIDL V+ E+ + S S+ V+
Sbjct: 141 YRRESRKIIRLIQSKFDFVEKASVDESYIDLGRPVYGTLLEKFPQL-KCRISDASDDEVL 199
Query: 57 GFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE----------LAIAGVIVEE 106
PD +D ++W G + + + +D Q LAI ++ +
Sbjct: 200 PSIPDKLPQD------IQWYGTIIESEKE--LADPQDIQAPQIFDWDDVVLAIGSELLLD 251
Query: 107 IRAAVLSKTQFHCSAGIAHNKV 128
+R ++ + + SAG+A NK+
Sbjct: 252 LRQSIHDELGYTTSAGLARNKL 273
>gi|307103424|gb|EFN51684.1| hypothetical protein CHLNCDRAFT_139920 [Chlorella variabilis]
Length = 720
Score = 42.4 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIG 43
YR G++V +LS + ERASIDE Y+DLTD R+ + G
Sbjct: 120 YRGEGKKVQDILSRLAT-TERASIDECYLDLTDEAQRRLAACG 161
>gi|194746257|ref|XP_001955597.1| GF18848 [Drosophila ananassae]
gi|190628634|gb|EDV44158.1| GF18848 [Drosophila ananassae]
Length = 732
Score = 42.4 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 26/129 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +++ +L ++ +VE+ DE ++D+T +V R
Sbjct: 89 YRQMSQKIFDLLLNYTPLVEKLGFDENFMDVTSLVELRQA-------------------- 128
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQELAIAGVIVEEIRAAVLSKTQFHC 119
+N E +K V G +Y + T L + Q LAI I +EIR + + C
Sbjct: 129 -HNAEAQQKPAV----GHIYPEDGTPLSACDCGCAQRLAIGSRIAQEIREELKLRLGITC 183
Query: 120 SAGIAHNKV 128
AGI++NK+
Sbjct: 184 CAGISYNKL 192
>gi|393776688|ref|ZP_10364982.1| DNA polymerase IV, devoid of proofreading, damage-inducible
protein P [Ralstonia sp. PBA]
gi|392716045|gb|EIZ03625.1| DNA polymerase IV, devoid of proofreading, damage-inducible
protein P [Ralstonia sp. PBA]
Length = 339
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR A R ++A+ +++ +V+ S+DEAY+D+TD H R
Sbjct: 62 YRAASRTILAIYRDYTPLVQPLSLDEAYLDVTDSPHCR 99
>gi|327352728|gb|EGE81585.1| sister chromatid cohesion protein [Ajellomyces dermatitidis ATCC
18188]
Length = 549
Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR----KAGVME 74
VE+A IDE ++DL+ +V+E + L ++ G D R V+E
Sbjct: 183 VEKAGIDEVFVDLSALVYETL----------LDRHPMLREGEVGRDMSERLPRPPTTVLE 232
Query: 75 WLGQ-VYSDTDTSLMENTE-DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W + + D D E + D+ + + I IV +RA + + ++ CSAGIA NK+
Sbjct: 233 WGKEDMLVDLDAGQAEEDDPDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIARNKM 290
>gi|213513962|ref|NP_001133709.1| DNA polymerase iota [Salmo salar]
gi|209155032|gb|ACI33748.1| DNA polymerase iota [Salmo salar]
Length = 757
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 31/130 (23%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L F +VER DE ++D+T++V RM
Sbjct: 119 YRETSYKVTELLMSFCPLVERLGFDENFMDITEMVERRM--------------------- 157
Query: 61 DNNDEDARKAGVMEWLGQVYS--DTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFH 118
E ++ + G VYS +D +M + LA+ I E+RA + SK
Sbjct: 158 ----EQTPESAHYSYEGHVYSLDTSDAKVMVHP----LLAVGSHIAAELRAEIHSKLGLT 209
Query: 119 CSAGIAHNKV 128
AGIA +K+
Sbjct: 210 GCAGIATSKL 219
>gi|157692892|ref|YP_001487354.1| DNA polymerase IV [Bacillus pumilus SAFR-032]
gi|157681650|gb|ABV62794.1| DNA-directed DNA polymerase IV [Bacillus pumilus SAFR-032]
Length = 414
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR++ +E+ +L E+S++VE SIDE YIDLT
Sbjct: 83 YRSSSQEMFTILREYSDLVEPVSIDEGYIDLT 114
>gi|327277898|ref|XP_003223700.1| PREDICTED: DNA polymerase iota-like [Anolis carolinensis]
Length = 686
Score = 42.0 bits (97), Expect = 0.088, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V A+L EF+ +VER DE ++D+T++V +++ A S++S
Sbjct: 120 YREMSYKVTALLEEFTPLVERLGFDENFVDITELVDLKLEQWKKDAFSKIS--------- 170
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+ G +Y+ +L LA+ I +R A+ +
Sbjct: 171 --------------FSGHIYNKQTVNLHNPVH--IRLAVGSQIAATLREAMYHRLGLTGC 214
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 215 AGVASNKL 222
>gi|194016993|ref|ZP_03055606.1| DNA polymerase IV 1 (Pol IV 1) [Bacillus pumilus ATCC 7061]
gi|194011599|gb|EDW21168.1| DNA polymerase IV 1 (Pol IV 1) [Bacillus pumilus ATCC 7061]
Length = 412
Score = 42.0 bits (97), Expect = 0.089, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR++ +E+ +L E+S++VE SIDE YIDLT
Sbjct: 81 YRSSSQEMFTILREYSDLVEPVSIDEGYIDLT 112
>gi|444319076|ref|XP_004180195.1| hypothetical protein TBLA_0D01680 [Tetrapisispora blattae CBS 6284]
gi|387513237|emb|CCH60676.1| hypothetical protein TBLA_0D01680 [Tetrapisispora blattae CBS 6284]
Length = 670
Score = 42.0 bits (97), Expect = 0.090, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM-----------KSIGHIAASQ 49
YR GR+++ V EF ++VE+AS+DE ++D + +++ S+
Sbjct: 131 YRREGRKILRVFKEFVDLVEKASVDEVFLDFGRLCFQKLLFDPTLFANGVSSLEGEHKKN 190
Query: 50 LSNTFVVGFGPDNND---EDARKAGVMEWLGQVYSDTDTSLMENTEDFQEL--AIAGVIV 104
+ FV G D ND E + + G VY + S +D+ ++ A+A I
Sbjct: 191 IQEMFVDG-EYDLNDYLPEVPEHLKNISFDGLVYGIDEESTEPLIKDWDDVIFALASNIS 249
Query: 105 EEIRAAVLSKTQFHCSAGIAHNK 127
++IR + + S GIA K
Sbjct: 250 QQIRDYIKENVGYTTSCGIARTK 272
>gi|19113570|ref|NP_596778.1| sister chromatid cohesion protein/DNA polymerase eta Eso1
[Schizosaccharomyces pombe 972h-]
gi|12230051|sp|O42917.1|ESO1_SCHPO RecName: Full=N-acetyltransferase eso1; AltName: Full=ECO1 homolog;
AltName: Full=Sister chromatid cohesion protein eso1
gi|2842510|emb|CAA16862.1| sister chromatid cohesion protein/DNA polymerase eta Eso1
[Schizosaccharomyces pombe]
gi|7678718|dbj|BAA95122.1| Eso1 [Schizosaccharomyces pombe]
Length = 872
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 21/137 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT-DVVHERMKSIGHIA-ASQLSNTFVVGF 58
YR+ +++ ++ + + +V++ASIDE +I+LT DV ++ ++ S+ SN +
Sbjct: 123 YRHESVKILNIIKKHAPVVKKASIDECFIELTSDVKRIVLEEYPYLKIPSEDSNVALP-- 180
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT-EDFQE------LAIAGVIVEEIRAAV 111
+A V+ W + + +++ T ED++ L A IV+EIR +
Sbjct: 181 ----------QAPVLLWPAEFGMVIEEEVVDRTKEDYERDWDDVFLFYAAKIVKEIRDDI 230
Query: 112 LSKTQFHCSAGIAHNKV 128
+ ++ CSAG++ N +
Sbjct: 231 YLQLKYTCSAGVSFNPM 247
>gi|398913758|ref|ZP_10656617.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM49]
gi|398179843|gb|EJM67442.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM49]
Length = 353
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A RE+ + E++ I+E S+DEAY+D++D H
Sbjct: 81 YREASREIHTIFREYTEIIEPLSLDEAYLDVSDSAH 116
>gi|317128461|ref|YP_004094743.1| DNA-directed DNA polymerase [Bacillus cellulosilyticus DSM 2522]
gi|315473409|gb|ADU30012.1| DNA-directed DNA polymerase [Bacillus cellulosilyticus DSM 2522]
Length = 423
Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 42
YR+A + + +L E + +VE SIDE Y+D+TD VH +M++I
Sbjct: 82 YRHASKRMFQLLYEITPLVEPVSIDEGYLDVTD-VHLKMQAI 122
>gi|303257690|ref|ZP_07343702.1| ATP-NAD kinase [Burkholderiales bacterium 1_1_47]
gi|302859660|gb|EFL82739.1| ATP-NAD kinase [Burkholderiales bacterium 1_1_47]
Length = 366
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
Y+ A EV + S ++N++E+ SIDEA++D+TDV
Sbjct: 83 YKKASAEVFEIFSRYTNLIEQVSIDEAFLDVTDV 116
>gi|403162637|ref|XP_003322823.2| hypothetical protein PGTG_04360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173018|gb|EFP78404.2| hypothetical protein PGTG_04360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 366
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +++ + SE +E+ASIDEA++D SI ++S++S + P
Sbjct: 51 YRRESVKILKIFSEICPTIEKASIDEAFLDF---------SIPD-SSSEISLDDPLPNPP 100
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+ ED ++ V D D+ NT L I ++ R V + + CS
Sbjct: 101 PLDLEDLLRSSQS---NLVPLDADSDYPTNTCTDIALLIGTELMARCRQQVFDRLGYTCS 157
Query: 121 AGIAHNKV 128
AGIA NK+
Sbjct: 158 AGIATNKM 165
>gi|85818491|gb|EAQ39651.1| UmuC protein [Dokdonia donghaensis MED134]
Length = 424
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFV 55
Y + V+ VL EFS VE SIDE+++DL+ ++H + + GH Q+ NT V
Sbjct: 78 YGDMSDRVMNVLREFSPAVEVYSIDESFVDLSGMIHVDLNAYGH----QIKNTIV 128
>gi|407921870|gb|EKG15007.1| DNA-repair protein UmuC-like protein [Macrophomina phaseolina MS6]
Length = 591
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 25/141 (17%)
Query: 1 YRNAGREVIAVL-----SEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFV 55
YR R ++A++ SE VE+ASIDE ++DL+ VH M +L+
Sbjct: 11 YRLESRRILALIKGSLPSELQR-VEKASIDEVFMDLSAHVHSVMLE----RYPELA---- 61
Query: 56 VGFGPDNNDE-----DARKAGVMEWLGQVYSDTDTSLMENTEDFQE---LAIAGVIVEEI 107
GP D+ ++W D D + E+ + + + I IV +I
Sbjct: 62 ---GPPPYDDLMENLPTPPITALDWQTDHLVDLDANQTEDDDPDWDDIAILIGSEIVRDI 118
Query: 108 RAAVLSKTQFHCSAGIAHNKV 128
RA + + ++ CSAG+A NK+
Sbjct: 119 RAKIFEELKYTCSAGVARNKM 139
>gi|299537820|ref|ZP_07051109.1| DNA polymerase IV [Lysinibacillus fusiformis ZC1]
gi|424735572|ref|ZP_18164035.1| DNA polymerase IV [Lysinibacillus fusiformis ZB2]
gi|298726799|gb|EFI67385.1| DNA polymerase IV [Lysinibacillus fusiformis ZC1]
gi|422950229|gb|EKU44598.1| DNA polymerase IV [Lysinibacillus fusiformis ZB2]
Length = 412
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR+A +E+ +L ++ +VE SIDE Y+D+T++ ER
Sbjct: 84 YRHASKEMFTILRSYTPLVEPVSIDEGYLDVTELSKER 121
>gi|331001034|ref|ZP_08324667.1| DNA polymerase IV, partial [Parasutterella excrementihominis YIT
11859]
gi|329569467|gb|EGG51239.1| DNA polymerase IV [Parasutterella excrementihominis YIT 11859]
Length = 289
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
Y+ A EV + S ++N++E+ SIDEA++D+TDV
Sbjct: 83 YKKASAEVFEIFSRYTNLIEQVSIDEAFLDVTDV 116
>gi|116619978|ref|YP_822134.1| DNA-directed DNA polymerase [Candidatus Solibacter usitatus
Ellin6076]
gi|116223140|gb|ABJ81849.1| DNA-directed DNA polymerase [Candidatus Solibacter usitatus
Ellin6076]
Length = 414
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 21/70 (30%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT-------------DVVHERMK------- 40
YR V VL FS +VE AS+DEAY+D+T ++HERMK
Sbjct: 79 YREYSHRVHEVLESFSPLVEMASVDEAYLDITGTERLYGPPLRAAHLLHERMKAATKLNC 138
Query: 41 SIGHIAASQL 50
SIG IAAS+L
Sbjct: 139 SIG-IAASRL 147
>gi|283769466|ref|ZP_06342362.1| putative DNA polymerase IV [Bulleidia extructa W1219]
gi|283103734|gb|EFC05120.1| putative DNA polymerase IV [Bulleidia extructa W1219]
Length = 395
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 37
YR+ E + ++ FS +E+ASIDE Y+D+TDV+ +
Sbjct: 79 YRSLSDEFMTIVRSFSPYMEKASIDECYVDVTDVIQQ 115
>gi|239612109|gb|EEQ89096.1| sister chromatid cohesion protein [Ajellomyces dermatitidis ER-3]
Length = 756
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR----KAGVME 74
VE+A IDE ++DL+ +V+E + L ++ G D R V+E
Sbjct: 238 VEKAGIDEVFVDLSALVYETL----------LDRHPMLREGEVGRDMSERLPRPPTTVLE 287
Query: 75 WLGQ-VYSDTDTSLMENTE-DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W + + D D E + D+ + + I IV +RA + + ++ CSAGIA NK+
Sbjct: 288 WGKEDMLVDLDAGQAEEDDPDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIARNKM 345
>gi|261202176|ref|XP_002628302.1| sister chromatid cohesion protein [Ajellomyces dermatitidis
SLH14081]
gi|239590399|gb|EEQ72980.1| sister chromatid cohesion protein [Ajellomyces dermatitidis
SLH14081]
Length = 757
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR----KAGVME 74
VE+A IDE ++DL+ +V+E + L ++ G D R V+E
Sbjct: 239 VEKAGIDEVFVDLSALVYETL----------LDRHPMLREGEVGRDMSERLPRPPTTVLE 288
Query: 75 WLGQ-VYSDTDTSLMENTE-DFQE--LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W + + D D E + D+ + + I IV +RA + + ++ CSAGIA NK+
Sbjct: 289 WGKEDMLVDLDAGQAEEDDPDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIARNKM 346
>gi|419820368|ref|ZP_14343979.1| DNA polymerase IV [Bacillus atrophaeus C89]
gi|388475520|gb|EIM12232.1| DNA polymerase IV [Bacillus atrophaeus C89]
Length = 414
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM 39
YR++ RE+ +L +++ +VE SIDE Y+D+TD + M
Sbjct: 84 YRSSSREMFQILRQYTELVEPVSIDEGYMDITDTPYSFM 122
>gi|311068988|ref|YP_003973911.1| DNA polymerase IV [Bacillus atrophaeus 1942]
gi|310869505|gb|ADP32980.1| DNA polymerase IV [Bacillus atrophaeus 1942]
Length = 414
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM 39
YR++ RE+ +L +++ +VE SIDE Y+D+TD + M
Sbjct: 84 YRSSSREMFQILRQYTELVEPVSIDEGYMDITDTPYSFM 122
>gi|237747875|ref|ZP_04578355.1| DNA-directed DNA polymerase [Oxalobacter formigenes OXCC13]
gi|229379237|gb|EEO29328.1| DNA-directed DNA polymerase [Oxalobacter formigenes OXCC13]
Length = 420
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT--DVVHERMKSIGHIAASQLSNTFVVGF 58
Y + V +L++FS + E S+DE+++DLT D V ERM +I A ++ VG
Sbjct: 80 YSDLSNRVKYLLADFSPVQEVYSVDESFLDLTGFDDVKERMVAIRETVAKRIGIPVCVGV 139
Query: 59 GP 60
GP
Sbjct: 140 GP 141
>gi|330504049|ref|YP_004380918.1| DNA polymerase IV [Pseudomonas mendocina NK-01]
gi|328918335|gb|AEB59166.1| DNA polymerase IV [Pseudomonas mendocina NK-01]
Length = 350
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YRN R++ + +F++++E S+DEAY+D++D H
Sbjct: 79 YRNVSRDIHGIFRQFTDLIEPLSLDEAYLDVSDSPH 114
>gi|331234078|ref|XP_003329699.1| hypothetical protein PGTG_11449 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308689|gb|EFP85280.1| hypothetical protein PGTG_11449 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 673
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM------KSIGHI--AASQLSN 52
YR +++ + SE +E+ASIDEA++D + V E + S+ + ++S++S
Sbjct: 117 YRRESVKILKIFSESCPTIEKASIDEAFLDFSIPVREILCTRYAFPSLEALQDSSSEISL 176
Query: 53 TFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
+ P + ED ++ V D D+ NT L I ++ R V
Sbjct: 177 DDPLPNPPPLDLEDLLRSSQSNL---VPLDVDSDHPTNTWTDIALLIGAELMARCRQQVF 233
Query: 113 SKTQFHCSAGIAHNKV 128
+ + CSAGIA NK+
Sbjct: 234 DRLGYTCSAGIATNKM 249
>gi|324505143|gb|ADY42216.1| DNA polymerase kappa [Ascaris suum]
Length = 641
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFV-VGFG 59
YR A EV V E+ + + S+DEAY+D+++ R++ + + +
Sbjct: 156 YRAASHEVRKVFEEYDSNFQMGSLDEAYLDISEYALTRLEPVERARIRYTGDCICRLPLL 215
Query: 60 PDNNDEDARKAGVMEWLGQVYSDTDTSLMENT---EDFQELAIAGVIVEEIRAAVLSKTQ 116
++ E+ + A V E L S+ + D +E IV E+R V T
Sbjct: 216 TEDEKEEMKNAKVSEELCGKCGKMRISVCDMVCFGTDIEE------IVRELRFRVEQATG 269
Query: 117 FHCSAGIAHNKV 128
CSAGIA N +
Sbjct: 270 LTCSAGIAPNSM 281
>gi|56475972|ref|YP_157561.1| DNA polymerase IV [Aromatoleum aromaticum EbN1]
gi|56312015|emb|CAI06660.1| DNA polymerase IV [Aromatoleum aromaticum EbN1]
Length = 361
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR A R+++A+ E++ +VE S+DEAY+D+T V
Sbjct: 80 YRTASRQILAIYREYTALVEPLSLDEAYLDVTAV 113
>gi|50287339|ref|XP_446099.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525406|emb|CAG59023.1| unnamed protein product [Candida glabrata]
Length = 635
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDL-----TDVVHERMKSIGH-----IAASQL 50
YR R+++ + EF + VE+AS+DE ++DL D++ +++ +A + L
Sbjct: 133 YRRESRKILKIFREFCDHVEKASVDEVFLDLGRLCFRDLMFPNVEATDDDDYNIVAENPL 192
Query: 51 SNTFVVG----FGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEE 106
FV G P +A K + + G VY+ + ++++ +D A+A +
Sbjct: 193 RELFVNGDYKLDMPLPPVPEALKK--LSYCGLVYNHEEAPVIQDWDDVI-FALASKNTQL 249
Query: 107 IRAAVLSKTQFHCSAGIAHNKV 128
IR + + S GIA NK+
Sbjct: 250 IRKTIQDNLGYTTSCGIARNKI 271
>gi|410977760|ref|XP_003995269.1| PREDICTED: DNA polymerase iota [Felis catus]
Length = 682
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 25/120 (20%)
Query: 9 IAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR 68
+ +L EFS +VER DE ++DLT++V +R + + + +LS V
Sbjct: 78 LELLEEFSPVVERLGFDENFVDLTEMVEKRRQ---QLQSGELSALTV------------- 121
Query: 69 KAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W G VY+D +L + L I I E+R A+ ++ AG+A NK+
Sbjct: 122 ------W-GHVYNDQYVNLHDILH--VRLLIGSQIAAEMREAMYNQLGLTGCAGVASNKL 172
>gi|226287048|gb|EEH42561.1| DNA polymerase eta [Paracoccidioides brasiliensis Pb18]
Length = 675
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 20/119 (16%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAG----VME 74
VE+A IDE ++DL+ +V+E + L ++ G D + R G V+E
Sbjct: 167 VEKAGIDEVFVDLSALVYETL----------LEWYPMLREGEVELDVNERLPGLPTTVLE 216
Query: 75 WLGQVYSDTDTSLMENTEDFQE-----LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W G+ D + E ED + + + IV +RAA+ + ++ CSA IA NK+
Sbjct: 217 W-GKEDMLVDLDVGEAEEDDPDWDDMCMLVGADIVRSVRAAIWERLKYTCSAAIARNKM 274
>gi|282882761|ref|ZP_06291368.1| DNA polymerase IV [Peptoniphilus lacrimalis 315-B]
gi|281297422|gb|EFA89911.1| DNA polymerase IV [Peptoniphilus lacrimalis 315-B]
Length = 344
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
Y +EV +LS +++I+E+ SIDE+Y+DLTD+
Sbjct: 78 YLEKSKEVFDLLSTYTDIIEKVSIDESYLDLTDI 111
>gi|378730434|gb|EHY56893.1| DNA polymerase eta subunit [Exophiala dermatitidis NIH/UT8656]
Length = 663
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 21/139 (15%)
Query: 1 YRNAGREVIAVLSEF-----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFV 55
YR R +A+L E VE+ASIDE ++DL+ +H+ + L
Sbjct: 149 YRLESRRTLALLKEILPPPPVQKVEKASIDEVFLDLSAQIHQIL----------LERYPE 198
Query: 56 VGFGPDNNDEDA---RKAGVMEWLGQVYSDTDTSLMENTEDFQE---LAIAGVIVEEIRA 109
+ + P ++ + + + W D D + E+ + + + I +V +R
Sbjct: 199 LRYAPYDDPTEPLPLPPSTALNWHADALVDLDLAETEDDDPDWDDVAMNIGAEVVRGVRQ 258
Query: 110 AVLSKTQFHCSAGIAHNKV 128
+ + ++ CSAGIA NK+
Sbjct: 259 TIYDRLKYTCSAGIARNKM 277
>gi|300814315|ref|ZP_07094587.1| putative DNA polymerase IV [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300511582|gb|EFK38810.1| putative DNA polymerase IV [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 344
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
Y +EV +LS +++I+E+ SIDE+Y+DLTD+
Sbjct: 78 YLEKSKEVFDLLSTYTDIIEKVSIDESYLDLTDI 111
>gi|120603928|ref|YP_968328.1| DNA-directed DNA polymerase [Desulfovibrio vulgaris DP4]
gi|120564157|gb|ABM29901.1| DNA-directed DNA polymerase [Desulfovibrio vulgaris DP4]
Length = 386
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 11/69 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT---------DVVHERMKSIGHIAASQLS 51
Y R V+AVL +FS +VE+AS+DEAY+D T D + +R+K G + +
Sbjct: 74 YAEVSRMVMAVLHDFSPVVEQASVDEAYLDATGLERLFGPVDEMAQRLK--GRVREATGG 131
Query: 52 NTFVVGFGP 60
T VG P
Sbjct: 132 LTCSVGLAP 140
>gi|354546768|emb|CCE43500.1| hypothetical protein CPAR2_211440 [Candida parapsilosis]
Length = 670
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 22/140 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT----DVVHERMKSIGHIAASQLSNTFVV 56
YR R+V+ ++ ++VE+AS+DE+YIDL +++ E+ + A + S +
Sbjct: 141 YRRESRKVLRIIQSKFDLVEKASVDESYIDLGRPIYEILLEKFPELNINAGNDESLPSI- 199
Query: 57 GFGPDNNDEDARKAGVMEWLGQVY-SDTDTSLMENTEDFQ-------ELAIAGVIVEEIR 108
P +D ++W G V S+ + + +N + Q LAI + ++R
Sbjct: 200 ---PKTLPQD------IQWHGTVIESEREIADPQNVQPPQIFDWDDVVLAIGSQFLLDLR 250
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
A+ + + SAG+A NK+
Sbjct: 251 QAIYDELGYTTSAGLARNKL 270
>gi|46578488|ref|YP_009296.1| DNA polymerase IV [Desulfovibrio vulgaris str. Hildenborough]
gi|387151972|ref|YP_005700908.1| DNA-directed DNA polymerase [Desulfovibrio vulgaris RCH1]
gi|46447899|gb|AAS94555.1| DNA polymerase IV [Desulfovibrio vulgaris str. Hildenborough]
gi|311232416|gb|ADP85270.1| DNA-directed DNA polymerase [Desulfovibrio vulgaris RCH1]
Length = 386
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 11/69 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT---------DVVHERMKSIGHIAASQLS 51
Y R V+AVL +FS +VE+AS+DEAY+D T D + +R+K G + +
Sbjct: 74 YAEVSRMVMAVLHDFSPVVEQASVDEAYLDATGLERLFGPVDEMAQRLK--GRVREATGG 131
Query: 52 NTFVVGFGP 60
T VG P
Sbjct: 132 LTCSVGLAP 140
>gi|449094884|ref|YP_007427375.1| DNA polymerase IV [Bacillus subtilis XF-1]
gi|449028799|gb|AGE64038.1| DNA polymerase IV [Bacillus subtilis XF-1]
Length = 428
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR++ R + +L E++++VE SIDE Y+D+TD
Sbjct: 98 YRSSSRAMFTILREYTDLVEPVSIDEGYMDMTD 130
>gi|291616433|ref|YP_003519175.1| DinB [Pantoea ananatis LMG 20103]
gi|291151463|gb|ADD76047.1| DinB [Pantoea ananatis LMG 20103]
Length = 367
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A ++ A+ S F++++E S+DEAY+D+TD H
Sbjct: 95 YKEASSQIRAIFSRFTSLIEPLSLDEAYLDVTDSTH 130
>gi|120555244|ref|YP_959595.1| DNA-directed DNA polymerase [Marinobacter aquaeolei VT8]
gi|189027669|sp|A1U339.1|DPO4_MARAV RecName: Full=DNA polymerase IV; Short=Pol IV
gi|120325093|gb|ABM19408.1| DNA-directed DNA polymerase [Marinobacter aquaeolei VT8]
Length = 353
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 27/34 (79%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR ++V+A+L E +++VE S+DEA++D+TDV
Sbjct: 80 YRAVSQQVMAILREMTDLVEPLSLDEAFLDVTDV 113
>gi|387813337|ref|YP_005428819.1| DNA polymerase IV [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381338349|emb|CCG94396.1| DNA polymerase IV [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 353
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 27/34 (79%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR ++V+A+L E +++VE S+DEA++D+TDV
Sbjct: 80 YRAVSQQVMAILREMTDLVEPLSLDEAFLDVTDV 113
>gi|386014814|ref|YP_005933091.1| DNA polymerase IV DinB [Pantoea ananatis AJ13355]
gi|386080507|ref|YP_005994032.1| DNA polymerase IV DinB [Pantoea ananatis PA13]
gi|327392873|dbj|BAK10295.1| DNA polymerase IV DinB [Pantoea ananatis AJ13355]
gi|354989688|gb|AER33812.1| DNA polymerase IV DinB [Pantoea ananatis PA13]
Length = 351
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A ++ A+ S F++++E S+DEAY+D+TD H
Sbjct: 79 YKEASSQIRAIFSRFTSLIEPLSLDEAYLDVTDSTH 114
>gi|85111821|ref|XP_964120.1| hypothetical protein NCU01936 [Neurospora crassa OR74A]
gi|28925887|gb|EAA34884.1| hypothetical protein NCU01936 [Neurospora crassa OR74A]
Length = 672
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 37/147 (25%)
Query: 1 YRNAGREVIAVLSE----FSNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSN 52
YR R+++A++ E VE+ASIDE ++DL+ VH ER +L+N
Sbjct: 142 YRLESRKILAIIKEELPPHLQKVEKASIDEVFMDLSAQVHTILLERF--------PELAN 193
Query: 53 TFVVGFGPDNNDEDAR-----KAGVMEWLGQVYSDTDTSLMENTE----DFQELA--IAG 101
P D+ ++W D EN E D+ ++A I
Sbjct: 194 -------PPPYDDPTEMLPMPSITALDWQADALVDLPD---ENAELEDPDWDDVAILIGS 243
Query: 102 VIVEEIRAAVLSKTQFHCSAGIAHNKV 128
IV ++R A+ K + CSAG+A NK+
Sbjct: 244 EIVRKVRIAIKDKLGYTCSAGVACNKL 270
>gi|378768385|ref|YP_005196857.1| DNA polymerase IV DinB [Pantoea ananatis LMG 5342]
gi|365187870|emb|CCF10820.1| DNA polymerase IV DinB [Pantoea ananatis LMG 5342]
Length = 351
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A ++ A+ S F++++E S+DEAY+D+TD H
Sbjct: 79 YKEASSQIRAIFSRFTSLIEPLSLDEAYLDVTDSTH 114
>gi|451847016|gb|EMD60324.1| hypothetical protein COCSADRAFT_39969 [Cochliobolus sativus ND90Pr]
Length = 716
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIA----VLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R+++ +L E VE+ASIDE ++DL+ VH + L +
Sbjct: 142 YRKESRKILKCIKDILPEKEQRVEKASIDEVFMDLSAQVH-----------TILLERYPE 190
Query: 57 GFGPDNNDEDAR-----KAGVMEWLGQVYSDTDTSLMENTE-DFQE--LAIAGVIVEEIR 108
GP D+ V++W T E+ + D+ + + IA IV ++R
Sbjct: 191 LRGPAPYDDPTEPLPKVPTTVLDWAADALVGTGEEDGEDRDPDWDDVCMVIASEIVRDVR 250
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
+ + CS G+A NK+
Sbjct: 251 KHIKDTLGYTCSGGVARNKM 270
>gi|398976935|ref|ZP_10686745.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM25]
gi|398138818|gb|EJM27832.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM25]
Length = 353
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + S++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFSDYTDLIEPLSLDEAYLDVSDSAH 116
>gi|367470316|ref|ZP_09470026.1| DNA polymerase IV [Patulibacter sp. I11]
gi|365814592|gb|EHN09780.1| DNA polymerase IV [Patulibacter sp. I11]
Length = 393
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER--MKSIGHIAASQLSNTFVVGF 58
YR A + V+A++ + +V++ S+DEAY+DLT ++ R M+ + ++ S VG
Sbjct: 118 YREASQGVMAIIRDEVEVVQQMSLDEAYVDLTGMLAPRAAMRRLVTRVKAETSLDVSVGI 177
Query: 59 GPD 61
GP+
Sbjct: 178 GPN 180
>gi|258405893|ref|YP_003198635.1| DNA-directed DNA polymerase [Desulfohalobium retbaense DSM 5692]
gi|257798120|gb|ACV69057.1| DNA-directed DNA polymerase [Desulfohalobium retbaense DSM 5692]
Length = 397
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y+ R+V+ VL FS VE+ASIDEAY+D+T
Sbjct: 78 YKELSRQVMTVLDGFSPCVEQASIDEAYLDIT 109
>gi|398853147|ref|ZP_10609771.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM80]
gi|398241357|gb|EJN27010.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM80]
Length = 353
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + S++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFSDYTDLIEPLSLDEAYLDVSDSAH 116
>gi|23099313|ref|NP_692779.1| DNA polymerase IV [Oceanobacillus iheyensis HTE831]
gi|38372232|sp|Q8EQ56.1|DPO4_OCEIH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|22777542|dbj|BAC13814.1| DNA damage inducible protein [Oceanobacillus iheyensis HTE831]
Length = 419
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGF 58
YR A RE+ +L+E + V+ SIDE Y+D+TD ++ + + A+QL + G
Sbjct: 88 YRAASREIFKMLAEITPYVQPVSIDEGYMDITDTIYAKDPL---VTANQLQQRILSGL 142
>gi|156838702|ref|XP_001643052.1| hypothetical protein Kpol_1069p17 [Vanderwaltozyma polyspora DSM
70294]
gi|156113641|gb|EDO15194.1| hypothetical protein Kpol_1069p17 [Vanderwaltozyma polyspora DSM
70294]
Length = 634
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM--------KSIGHIAASQLSN 52
YR GR++ + +F ++VE AS+DE ++D++ + +++ K L
Sbjct: 132 YRREGRKIFKIFKDFCDLVEIASVDEGFLDISRLCLQQLLFEEDILEKCKEDSEGKSLQE 191
Query: 53 TFVVGFGPDNNDEDARKAGV------MEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEE 106
F+ G + D D+ V +++ G VY SL+++ +D A+ I ++
Sbjct: 192 RFIAG----DYDLDSYLPPVPDTLKTLKFEGFVYDAEFGSLIDDWDDVI-FALGSQISQK 246
Query: 107 IRAAVLSKTQFHCSAGIAHNK 127
IR V + S GIA K
Sbjct: 247 IRNHVRDTLGYTTSCGIARTK 267
>gi|290988075|ref|XP_002676747.1| predicted protein [Naegleria gruberi]
gi|284090351|gb|EFC44003.1| predicted protein [Naegleria gruberi]
Length = 485
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 29/110 (26%)
Query: 18 IVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLG 77
++E IDEAYI++TD V+ R+++ A++L G D D RK
Sbjct: 112 VLEVCGIDEAYINVTDEVNWRLEN-----ATEL--------GIDVKDHRGRK-------- 150
Query: 78 QVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
S N++D L I I EEIR V + + SAGIAH+K
Sbjct: 151 -------VSKSVNSQD-NHLNIGSQIAEEIRCNVFNSLGYTISAGIAHSK 192
>gi|398866433|ref|ZP_10621927.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM78]
gi|398240663|gb|EJN26332.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM78]
Length = 353
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 20/115 (17%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
YR A RE+ + +++ I+E S+DEAY+D++D H R+ + I ++QL T
Sbjct: 81 YREASREIHTIFRDYTEIIEPLSLDEAYLDVSDSAHFGGSATRIAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDNNDEDARKAGVMEWLGQVYSD--TDTSLMENTEDFQELAIAGVIVEEI 107
G P+ ++L ++ SD L T D E ++G+ V ++
Sbjct: 141 SAGVAPN------------KFLAKIASDWKKPNGLFVITPDQVEAFVSGLPVSKL 183
>gi|366988779|ref|XP_003674157.1| hypothetical protein NCAS_0A12180 [Naumovozyma castellii CBS 4309]
gi|342300020|emb|CCC67776.1| hypothetical protein NCAS_0A12180 [Naumovozyma castellii CBS 4309]
Length = 636
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 21/141 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV--------HERMKSIGHIAASQLSN 52
YR R+++ + E ++VE+AS+DE ++DL + +E +S + L
Sbjct: 131 YRRESRKILKIFKEHCDLVEKASVDEVFLDLGRLCFQDLMFGENEEFESCDQL--KMLRK 188
Query: 53 TFVVGFGPDNNDEDARKAGV------MEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEE 106
F+ G + D +R V +E++G V++ + L+E+ +D L +A +
Sbjct: 189 MFIEG----DYDLKSRLPVVPDDLKKLEFVGNVFNSENRCLIEDWDDIIFL-LASRRTQA 243
Query: 107 IRAAVLSKTQFHCSAGIAHNK 127
+R + + S GI+ K
Sbjct: 244 VRDVIFKNLGYTTSCGISRTK 264
>gi|77457422|ref|YP_346927.1| DNA polymerase IV [Pseudomonas fluorescens Pf0-1]
gi|123605726|sp|Q3KH18.1|DPO4_PSEPF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|77381425|gb|ABA72938.1| putative DNA polymerase IV [Pseudomonas fluorescens Pf0-1]
Length = 353
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + S++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFSDYTDLIEPLSLDEAYLDVSDSAH 116
>gi|168024165|ref|XP_001764607.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684185|gb|EDQ70589.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 680
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK 40
YR A +V + +S + ERASIDEAY+D+++ V E ++
Sbjct: 103 YRQASAKVFNIFRRYSKLCERASIDEAYLDVSEQVEEMLE 142
>gi|148234382|ref|NP_001086552.1| DNA-directed DNA polymerase kappa [Xenopus laevis]
gi|49899074|gb|AAH76794.1| Polk-prov protein [Xenopus laevis]
Length = 862
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 30/148 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR EV +L+++ S+DEAY+D TD + ER+ + ++ TF++G
Sbjct: 175 YRAVSSEVREILAQYDPNFLPMSLDEAYLDFTDHLSERL------SWTEDKRTFIIGA-- 226
Query: 61 DNNDEDARKAGVMEWL----GQVYSDTDTSL---------MENTEDFQELAIAGVI---- 103
+N++E+ +G E + ++ D+ + + + TE+ + ++ +
Sbjct: 227 ENSEENKPLSGKQEQVECTSPILFEDSPSFVADQNVSQPGQDTTEEIRRPSLEKAVVFGT 286
Query: 104 -----VEEIRAAVLSKTQFHCSAGIAHN 126
V+E+R + KT SAGIA N
Sbjct: 287 SVEEAVKEMRFRIEQKTTLTASAGIAPN 314
>gi|34105668|gb|AAQ62022.1| DNA-damage-inducible protein P [Chromobacterium violaceum ATCC
12472]
Length = 496
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR A ++++A+ ++ ++E S+DEAY+D+T HER
Sbjct: 200 YRLASQQIMAIYQRYTEVIEPLSLDEAYLDVTGQPHER 237
>gi|60686906|gb|AAX35542.1| DNA polymerase kappa [Xenopus laevis]
Length = 862
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 30/148 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR EV +L+++ S+DEAY+D TD + ER+ + ++ TF++G
Sbjct: 175 YRAVSSEVREILAQYDPNFLPMSLDEAYLDFTDHLSERL------SWTEDKRTFIIGA-- 226
Query: 61 DNNDEDARKAGVMEWL----GQVYSDTDTSL---------MENTEDFQELAIAGVI---- 103
+N++E+ +G E + ++ D+ + + + TE+ + ++ +
Sbjct: 227 ENSEENKPLSGKQEQVECTSPILFEDSPSFVADQNVSQPGQDTTEEIRRPSLEKAVVFGT 286
Query: 104 -----VEEIRAAVLSKTQFHCSAGIAHN 126
V+E+R + KT SAGIA N
Sbjct: 287 SVEEAVKEMRFRIEQKTTLTASAGIAPN 314
>gi|161594047|ref|NP_904033.2| DNA polymerase IV [Chromobacterium violaceum ATCC 12472]
Length = 379
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR A ++++A+ ++ ++E S+DEAY+D+T HER
Sbjct: 83 YRLASQQIMAIYQRYTEVIEPLSLDEAYLDVTGQPHER 120
>gi|350297199|gb|EGZ78176.1| DNA/RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 672
Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 37/147 (25%)
Query: 1 YRNAGREVIAVLSE----FSNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSN 52
YR R+++A++ E VE+ASIDE ++DL+ VH ER +L+N
Sbjct: 142 YRLESRKILAIIKEELPPHLQKVEKASIDEVFMDLSAQVHTILLERF--------PELAN 193
Query: 53 TFVVGFGPDNNDEDAR-----KAGVMEWLGQVYSDTDTSLMENTE----DFQELA--IAG 101
P D+ ++W D EN E D+ ++A I
Sbjct: 194 -------PPPYDDPTEMLPMPSITALDWQADALVDLPD---ENAELEDPDWDDVAILIGS 243
Query: 102 VIVEEIRAAVLSKTQFHCSAGIAHNKV 128
IV ++R A+ K + CSAG+A NK+
Sbjct: 244 EIVRKVRIAIEDKLGYTCSAGVACNKL 270
>gi|384176005|ref|YP_005557390.1| DNA polymerase IV 1 [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349595229|gb|AEP91416.1| DNA polymerase IV 1 [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 414
Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR++ R + +L E++++VE SIDE Y+D+TD
Sbjct: 84 YRSSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>gi|348535636|ref|XP_003455305.1| PREDICTED: DNA polymerase iota-like [Oreochromis niloticus]
Length = 716
Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 27/128 (21%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR ++ +L + +VER DE ++D+T++V +R+ A + S F
Sbjct: 118 YREMSYKMTELLMSYCPLVERLGFDENFMDVTEMVEQRL------AQTVKSEDF------ 165
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+ G VY+ + ++ LA+ I E+R AV SK
Sbjct: 166 -------------SFKGHVYNHPSADV--KASNYPRLALGSHIAGELREAVHSKLGLTGC 210
Query: 121 AGIAHNKV 128
AGIA NK+
Sbjct: 211 AGIATNKL 218
>gi|146306757|ref|YP_001187222.1| DNA polymerase IV [Pseudomonas mendocina ymp]
gi|189027675|sp|A4XT24.1|DPO4_PSEMY RecName: Full=DNA polymerase IV; Short=Pol IV
gi|145574958|gb|ABP84490.1| DNA-directed DNA polymerase [Pseudomonas mendocina ymp]
Length = 352
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR+ RE+ + +F++++E S+DEAY+D++D H
Sbjct: 81 YRSVSREIHGIFRQFTDLIEPLSLDEAYLDVSDSPH 116
>gi|398873489|ref|ZP_10628745.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM74]
gi|398199330|gb|EJM86273.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM74]
Length = 353
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A RE+ + +++ I+E S+DEAY+D++D H
Sbjct: 81 YREASREIHTIFRDYTEIIEPLSLDEAYLDVSDSAH 116
>gi|421506211|ref|ZP_15953136.1| DNA polymerase IV [Pseudomonas mendocina DLHK]
gi|400342993|gb|EJO91378.1| DNA polymerase IV [Pseudomonas mendocina DLHK]
Length = 352
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR+ RE+ + +F++++E S+DEAY+D++D H
Sbjct: 81 YRSVSREIHGIFRQFTDLIEPLSLDEAYLDVSDSPH 116
>gi|398956322|ref|ZP_10676836.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM33]
gi|398150049|gb|EJM38671.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM33]
Length = 353
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A RE+ + +++ I+E S+DEAY+D++D H
Sbjct: 81 YREASREIHTIFRDYTEIIEPLSLDEAYLDVSDSAH 116
>gi|426408057|ref|YP_007028156.1| DNA polymerase IV [Pseudomonas sp. UW4]
gi|426266274|gb|AFY18351.1| DNA polymerase IV [Pseudomonas sp. UW4]
Length = 353
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A RE+ + +++ I+E S+DEAY+D++D H
Sbjct: 81 YREASREIHTIFRDYTEIIEPLSLDEAYLDVSDSAH 116
>gi|398893180|ref|ZP_10645998.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM55]
gi|398184653|gb|EJM72095.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM55]
Length = 353
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A RE+ + +++ I+E S+DEAY+D++D H
Sbjct: 81 YREASREIHTIFRDYTEIIEPLSLDEAYLDVSDSAH 116
>gi|398795460|ref|ZP_10555333.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pantoea sp. YR343]
gi|398206189|gb|EJM92958.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pantoea sp. YR343]
Length = 351
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R++ + S +++++E S+DEAY+D+TD +H
Sbjct: 79 YKEASRQIRDIFSRYTSLIEPLSLDEAYLDVTDSLH 114
>gi|432098568|gb|ELK28275.1| DNA polymerase iota [Myotis davidii]
Length = 663
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 42
YR +V +L EFS +VER DE ++DL+++V +R++ +
Sbjct: 59 YREISYKVTELLEEFSPVVERLGFDENFVDLSEMVEKRLQQL 100
>gi|56459315|ref|YP_154596.1| hypothetical protein IL0204 [Idiomarina loihiensis L2TR]
gi|56178325|gb|AAV81047.1| DinP [Idiomarina loihiensis L2TR]
Length = 356
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT-------------DVVHERMKSIGHIAA 47
YR +V+ +L E + +E ASIDE Y+DLT D V E++K++G +
Sbjct: 82 YRELSDKVLDILRELTPRIEPASIDEFYLDLTHLEGFKGSATLAMDFVREQIKTLGITGS 141
Query: 48 SQLSN-TFVVGFGPDNNDEDA----RKAGVMEWLG 77
+ +SN V + D R A VM+++
Sbjct: 142 AGISNQKMVAKIASEERKPDGQFVVRPAEVMDYIA 176
>gi|402224670|gb|EJU04732.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 604
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 19/134 (14%)
Query: 6 REVIAVLSEFSNI-----VERASIDEAYIDLTDVVHER-MKSIGHIAASQLSNTFVVGFG 59
RE I VL F + +ERASIDEA+ DLT V E ++ ++ T
Sbjct: 134 RESIKVLRVFQSTLPEAEIERASIDEAFFDLTAPVREEILRRYPYLRDVPSDAT------ 187
Query: 60 PDNNDEDARKAGVMEWLGQ----VYSDTDTSLMENTEDFQELAIA--GVIVEEIRAAVLS 113
D D A V++W G+ + + + ++ + ++A+A +V ++R V
Sbjct: 188 -DGMDSPLPPAPVIDWTGRGNVLAIREGEEAGVDGQGTWADVALALGAEMVHKVRQEVHK 246
Query: 114 KTQFHCSAGIAHNK 127
+ + SAGIA NK
Sbjct: 247 QLGYTTSAGIARNK 260
>gi|336463579|gb|EGO51819.1| hypothetical protein NEUTE1DRAFT_149518 [Neurospora tetrasperma
FGSC 2508]
Length = 672
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 37/147 (25%)
Query: 1 YRNAGREVIAVLSE----FSNIVERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSN 52
YR R+++A++ E VE+ASIDE ++DL+ VH ER +L+N
Sbjct: 142 YRLESRKILAIIKEELPPHLQKVEKASIDELFMDLSAQVHTILIERF--------PELAN 193
Query: 53 TFVVGFGPDNNDEDAR-----KAGVMEWLGQVYSDTDTSLMENTE----DFQELA--IAG 101
P D+ ++W D EN E D+ ++A I
Sbjct: 194 -------PPPYDDPTEMLPMPSITALDWQADALVDLPD---ENAELEDPDWDDVAILIGS 243
Query: 102 VIVEEIRAAVLSKTQFHCSAGIAHNKV 128
IV ++R A+ K + CSAG+A NK+
Sbjct: 244 EIVRKVRIAIKDKLGYTCSAGVACNKL 270
>gi|18310548|ref|NP_562482.1| DNA polymerase IV [Clostridium perfringens str. 13]
gi|22095617|sp|Q8XK37.1|DPO4_CLOPE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|18145229|dbj|BAB81272.1| DNA-damage-inducible protein P [Clostridium perfringens str. 13]
Length = 359
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-------------VHERM-KSIGHIA 46
Y+ R+V+ +L+E+SNIVE S+DEA++D++ + ER+ K +G A
Sbjct: 82 YKKVSRQVMNILNEYSNIVEPLSLDEAFVDVSKSKRCKGSATLIALEIKERIFKEVGLTA 141
Query: 47 ASQLS-NTFVVGFGPDNNDEDA 67
++ +S N F+ D D
Sbjct: 142 SAGVSFNKFLAKMASDFRKPDG 163
>gi|68469717|ref|XP_721110.1| hypothetical protein CaO19.8485 [Candida albicans SC5314]
gi|46443012|gb|EAL02297.1| hypothetical protein CaO19.8485 [Candida albicans SC5314]
Length = 640
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 28/145 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR R+++ V+ + ++ E+AS+DE YIDL +++R+ + QLS G
Sbjct: 144 YRRESRKILRVIGKSFDLTEKASVDECYIDLGREIYKRLIDL----FPQLSR------GS 193
Query: 61 DNNDEDA---------RKAGVMEWLGQVYS-------DTDTSLMENTEDFQELA--IAGV 102
+N E++ ++W G++ + D D ED+ ++ I
Sbjct: 194 RDNPENSYANLPLIPPALPLNLKWEGEIINTEKEKSEDNDIVSPPVIEDWDDICFIIGSQ 253
Query: 103 IVEEIRAAVLSKTQFHCSAGIAHNK 127
I+ E+R + + + SAG+A K
Sbjct: 254 ILLEVRKDIFEELGYTTSAGLARTK 278
>gi|68469958|ref|XP_720989.1| hypothetical protein CaO19.866 [Candida albicans SC5314]
gi|46442884|gb|EAL02170.1| hypothetical protein CaO19.866 [Candida albicans SC5314]
gi|238882146|gb|EEQ45784.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 640
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 28/145 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR R+++ V+ + ++ E+AS+DE YIDL +++R+ + QLS G
Sbjct: 144 YRRESRKILRVIGKSFDLTEKASVDECYIDLGREIYKRLIDL----FPQLSR------GS 193
Query: 61 DNNDEDA---------RKAGVMEWLGQVYS-------DTDTSLMENTEDFQELA--IAGV 102
+N E++ ++W G++ + D D ED+ ++ I
Sbjct: 194 RDNPENSYANLPLIPPTLPLNLKWEGEIINTEKEKSEDNDIVSPPVIEDWDDICFIIGSQ 253
Query: 103 IVEEIRAAVLSKTQFHCSAGIAHNK 127
I+ E+R + + + SAG+A K
Sbjct: 254 ILLEVRKDIFEELGYTTSAGLARTK 278
>gi|399910703|ref|ZP_10779017.1| DNA polymerase IV [Halomonas sp. KM-1]
Length = 349
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A ++++A+ E + +VE S+DEA++D+TDV
Sbjct: 80 YREASQQLLAIFHELTPLVEPLSLDEAFLDVTDVTR 115
>gi|427415250|ref|ZP_18905435.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Leptolyngbya sp. PCC 7375]
gi|425756015|gb|EKU96874.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Leptolyngbya sp. PCC 7375]
Length = 420
Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI---AASQLSNTFV-V 56
Y++ R VI L +FS VE+ SIDEA++ L+ H + GH Q +N V V
Sbjct: 76 YKDMSRRVIETLQQFSPEVEQYSIDEAFLGLSGFTHLDLTDYGHTIRRTVKQWTNIPVSV 135
Query: 57 GFGP 60
G P
Sbjct: 136 GIAP 139
>gi|385335758|ref|YP_005889705.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
gi|317164301|gb|ADV07842.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
Length = 368
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 83 TDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 119 PDEAYLDVTRNFKNIPYAGEVAKEIRAAIFAETGLTASAGIAPNK 163
>gi|433656055|ref|YP_007299763.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433294244|gb|AGB20066.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 379
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR ++V +L E ++IVE SIDEAY+D+TD+
Sbjct: 79 YREVSKKVFDILYEVTDIVEPLSIDEAYLDVTDI 112
>gi|427415310|ref|ZP_18905495.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Leptolyngbya sp. PCC 7375]
gi|425756075|gb|EKU96934.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Leptolyngbya sp. PCC 7375]
Length = 420
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI---AASQLSNTFV-V 56
Y++ R VI L +FS VE+ SIDEA++ L+ H + GH Q +N V V
Sbjct: 76 YKDMSRRVIETLQQFSPEVEQYSIDEAFLGLSGFTHLDLTDYGHTIRHTVKQWTNIPVSV 135
Query: 57 GFGP 60
G P
Sbjct: 136 GIAP 139
>gi|254493799|ref|ZP_05106970.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268594856|ref|ZP_06129023.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268596764|ref|ZP_06130931.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268601428|ref|ZP_06135595.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268603758|ref|ZP_06137925.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268682227|ref|ZP_06149089.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291043738|ref|ZP_06569454.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
gi|226512839|gb|EEH62184.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268548245|gb|EEZ43663.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268550552|gb|EEZ45571.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268585559|gb|EEZ50235.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268587889|gb|EEZ52565.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268622511|gb|EEZ54911.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291012201|gb|EFE04190.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
Length = 352
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 83 TDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 103 PDEAYLDVTRNFKNIPYAGEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|239827156|ref|YP_002949780.1| DNA polymerase IV [Geobacillus sp. WCH70]
gi|239807449|gb|ACS24514.1| DNA-directed DNA polymerase [Geobacillus sp. WCH70]
Length = 414
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR +V L+ F+ ++ERASIDE Y+D+TD
Sbjct: 89 YREISEKVFQFLATFTPVLERASIDEGYLDITD 121
>gi|15614035|ref|NP_242338.1| DNA polymerase IV [Bacillus halodurans C-125]
gi|22095640|sp|Q9KCU7.1|DPO41_BACHD RecName: Full=DNA polymerase IV 1; Short=Pol IV 1
gi|10174089|dbj|BAB05191.1| BH1472 [Bacillus halodurans C-125]
Length = 413
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR+A +++ ++L E++ +VE+ SIDE Y+D+T + E K I +++
Sbjct: 83 YRSASQKIFSLLEEYTPLVEKVSIDEGYMDVTTTIKKVHPLELAKEIQQRILAEMDLPCS 142
Query: 56 VGFGPD 61
+G P+
Sbjct: 143 IGIAPN 148
>gi|194098704|ref|YP_002001766.1| DNA polymerase IV [Neisseria gonorrhoeae NCCP11945]
gi|193933994|gb|ACF29818.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
NCCP11945]
Length = 368
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 83 TDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 119 PDEAYLDVTRNFKNIPYAGEVAKEIRAAIFAETGLTASAGIAPNK 163
>gi|425773935|gb|EKV12260.1| hypothetical protein PDIG_45850 [Penicillium digitatum PHI26]
gi|425782385|gb|EKV20297.1| hypothetical protein PDIP_17780 [Penicillium digitatum Pd1]
Length = 575
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
Query: 19 VERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVME 74
+E+AS+DE Y+DL+ VH +R ++ + +S + + V+
Sbjct: 149 IEKASVDEMYLDLSAQVHSILLQRYPALLDVESSSKDEMLPLP-----------RTSVLN 197
Query: 75 WLGQVYSDTDTSLMENTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W D ++ D+ ++A I IV+ IR + ++ CSAGIA NK+
Sbjct: 198 WHADAVFGADAE--DDHFDWDDIALNIGSEIVDNIRREIFKHMRYTCSAGIARNKM 251
>gi|119717925|ref|YP_924890.1| DNA polymerase IV [Nocardioides sp. JS614]
gi|119538586|gb|ABL83203.1| DNA-directed DNA polymerase [Nocardioides sp. JS614]
Length = 362
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVK 129
D + + ED EL E +RA VL++T+ HCS GI NK++
Sbjct: 116 DEAFLAAGEDHGELGNPREFAEHLRAEVLAETRLHCSVGIGDNKLR 161
>gi|195999238|ref|XP_002109487.1| hypothetical protein TRIADDRAFT_2325 [Trichoplax adhaerens]
gi|190587611|gb|EDV27653.1| hypothetical protein TRIADDRAFT_2325, partial [Trichoplax
adhaerens]
Length = 386
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 26/128 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V L +FS V R DE YID+T++V R+ +Q VG+
Sbjct: 77 YREVSFKVTDYLKKFSTKVHRLGFDENYIDVTELVQCRL--------NQFQGRLFVGYLY 128
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
N++ +A D + L + I I E+R + + S
Sbjct: 129 QNSNTVKAQA----------CDCNCRL--------RMIIGSQIAAEMRQGLWNVFSLTSS 170
Query: 121 AGIAHNKV 128
GIAHNK+
Sbjct: 171 GGIAHNKM 178
>gi|443631674|ref|ZP_21115854.1| DNA polymerase IV [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443347789|gb|ELS61846.1| DNA polymerase IV [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 414
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR++ R + +L E++++VE SIDE Y+D+TD
Sbjct: 84 YRSSSRAMFNILREYTDLVEPVSIDEGYMDMTD 116
>gi|217969986|ref|YP_002355220.1| DNA polymerase IV [Thauera sp. MZ1T]
gi|217507313|gb|ACK54324.1| DNA-directed DNA polymerase [Thauera sp. MZ1T]
Length = 369
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQL 50
YR A R ++A+ +++ +VE S+DEAY+D+T V ER + + A ++
Sbjct: 79 YREASRRILAIYHDYTALVEPLSLDEAYLDVTGV--ERCRGSASLMAQEI 126
>gi|296333460|ref|ZP_06875913.1| DNA polymerase IV [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305675034|ref|YP_003866706.1| DNA-damage lesion bypass DNA polymerase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149658|gb|EFG90554.1| DNA polymerase IV [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305413278|gb|ADM38397.1| DNA-damage lesion bypass DNA polymerase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 414
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR++ R + +L E++++VE SIDE Y+D+TD
Sbjct: 84 YRSSSRAMFNILREYTDLVEPVSIDEGYMDMTD 116
>gi|59801155|ref|YP_207867.1| DNA polymerase IV [Neisseria gonorrhoeae FA 1090]
gi|240014082|ref|ZP_04720995.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
DGI18]
gi|240016516|ref|ZP_04723056.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
FA6140]
gi|240121643|ref|ZP_04734605.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
PID24-1]
gi|268599074|ref|ZP_06133241.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268684378|ref|ZP_06151240.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268686699|ref|ZP_06153561.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|293399022|ref|ZP_06643187.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
gi|75432500|sp|Q5F8N2.1|DPO4_NEIG1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|59718050|gb|AAW89455.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae FA
1090]
gi|268583205|gb|EEZ47881.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268624662|gb|EEZ57062.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268626983|gb|EEZ59383.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610436|gb|EFF39546.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
Length = 352
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYAGEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|350266570|ref|YP_004877877.1| DNA polymerase IV 1 [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349599457|gb|AEP87245.1| DNA polymerase IV 1 [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 414
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR++ R + +L E++++VE SIDE Y+D+TD
Sbjct: 84 YRSSSRAMFNILREYTDLVEPVSIDEGYMDMTD 116
>gi|169623303|ref|XP_001805059.1| hypothetical protein SNOG_14888 [Phaeosphaeria nodorum SN15]
gi|160704960|gb|EAT77740.2| hypothetical protein SNOG_14888 [Phaeosphaeria nodorum SN15]
Length = 652
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 1 YRNAGREVIAVLSEF----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVV 56
YR R ++ + E VE+ASIDE ++DL+ +H + L +
Sbjct: 142 YRLECRRILKCIKESLPDKEQRVEKASIDEVFMDLSGQIH-----------TILLERYPE 190
Query: 57 GFGPDNNDEDARK-----AGVMEWLGQVYSDTDTSLMENTE-DFQEL--AIAGVIVEEIR 108
GP D+ + V++W +T E+ + D+ ++ IA IV ++R
Sbjct: 191 LRGPAPYDDPTERLPKVPTTVLDWAADALVETGEEDGEDQDPDWDDVCTVIASEIVRDVR 250
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
+ K + CS G+A NK+
Sbjct: 251 KNIKEKLGYTCSGGVAKNKM 270
>gi|410495674|ref|YP_006905520.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
gi|410440834|emb|CCI63462.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
Length = 365
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR+ G+E+ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVTD 124
>gi|335356977|ref|ZP_08548847.1| DNA polymerase IV [Lactobacillus animalis KCTC 3501]
Length = 360
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR R++ A+ +EFS++VE + DEAY+D+T
Sbjct: 84 YRKVSRQIHAIFAEFSDLVEPIAFDEAYLDIT 115
>gi|386317724|ref|YP_006013888.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|422759836|ref|ZP_16813598.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322412671|gb|EFY03579.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|323128011|gb|ADX25308.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
Length = 365
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR+ G+E+ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVTD 124
>gi|260941910|ref|XP_002615121.1| hypothetical protein CLUG_05136 [Clavispora lusitaniae ATCC 42720]
gi|238851544|gb|EEQ41008.1| hypothetical protein CLUG_05136 [Clavispora lusitaniae ATCC 42720]
Length = 748
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR R++I VL ++VE+AS+DE Y+D V+ +M + F+ GP
Sbjct: 139 YRRESRKIIKVLKRECDLVEKASVDECYLDFGRAVYAKMVE---------AFPFLESVGP 189
Query: 61 DNNDEDARKAGV-MEWLGQVYSDTDTS 86
D W+G V ++ +T+
Sbjct: 190 DEPLPPVPSLPSDFYWVGGVQTEEETT 216
>gi|417926930|ref|ZP_12570318.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|340764804|gb|EGR87330.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
Length = 365
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR+ G+E+ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVTD 124
>gi|251783287|ref|YP_002997592.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242391919|dbj|BAH82378.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 365
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR+ G+E+ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVTD 124
>gi|389820614|ref|ZP_10209828.1| DNA polymerase IV [Planococcus antarcticus DSM 14505]
gi|388462813|gb|EIM05204.1| DNA polymerase IV [Planococcus antarcticus DSM 14505]
Length = 413
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER-----MKSIGHIAASQLSNTFV 55
YR A + + +L ++++VE SIDE Y+D+T++ +R K+I ++L
Sbjct: 82 YRAASKAMFEILRSYTDMVEPVSIDEGYLDVTELTQQRHALEIAKNIQQRLLAELDLPCS 141
Query: 56 VGFGPDN 62
+G P+
Sbjct: 142 IGIAPNK 148
>gi|119383484|ref|YP_914540.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
gi|119373251|gb|ABL68844.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
Length = 363
Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR ++V A+ +E++ +VE S+DEAY+DLTD
Sbjct: 85 YRAVSQQVRAIFAEYTPLVEPLSLDEAYLDLTD 117
>gi|408402364|ref|YP_006860328.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|407968593|dbj|BAM61831.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
Length = 365
Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR+ G+E+ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVTD 124
>gi|343428792|emb|CBQ72337.1| related to DNA polymerase kappa [Sporisorium reilianum SRZ2]
Length = 654
Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAA-------SQLSNT 53
Y A ++V+AV ++ + +AS+DEAY+D+TD V + SI + S+ T
Sbjct: 219 YVQASQKVMAVFEQYDENLAKASLDEAYLDITDYVEQHGGSIDQVVQQLRDQVRSETQLT 278
Query: 54 FVVGFGPD 61
VG P+
Sbjct: 279 VSVGIAPN 286
>gi|417752573|ref|ZP_12400765.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|333771630|gb|EGL48550.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
Length = 365
Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR+ G+E+ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVTD 124
>gi|195108869|ref|XP_001999015.1| GI23309 [Drosophila mojavensis]
gi|193915609|gb|EDW14476.1| GI23309 [Drosophila mojavensis]
Length = 749
Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 26/129 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +++ +L ++ VE+ DE Y+D+T +V R H A +Q F P
Sbjct: 89 YRLMSQKIFDLLLNYTPDVEKLGFDENYMDVTSLVELRQ---AHAADAQ--------FKP 137
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQELAIAGVIVEEIRAAVLSKTQFHC 119
+G +Y T L + Q LAI I +EIR + + C
Sbjct: 138 P--------------VGHIYPADGTPLTACSCGCAQRLAIGTRIAQEIRDELHLRLGITC 183
Query: 120 SAGIAHNKV 128
AGIA+NK+
Sbjct: 184 CAGIAYNKL 192
>gi|313668564|ref|YP_004048848.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
gi|313006026|emb|CBN87485.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
Length = 352
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYAGDVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|365981949|ref|XP_003667808.1| hypothetical protein NDAI_0A04080 [Naumovozyma dairenensis CBS 421]
gi|343766574|emb|CCD22565.1| hypothetical protein NDAI_0A04080 [Naumovozyma dairenensis CBS 421]
Length = 643
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER-MKSIGHI-----AASQLSNTF 54
YR R++ + E+ VE+AS+DE ++DL + E M S + A + NTF
Sbjct: 133 YRRESRKLFKIFKEYCYSVEKASVDEVFLDLGRLCFEDLMFSDDEVFQKSEAMQAIRNTF 192
Query: 55 VVGFGPDNNDEDARKA--------GVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEE 106
+ N + D + A +E+ G V++ + L+ + +D A+A ++
Sbjct: 193 I------NGEYDLQTALPSLPDELKNLEFTGMVFNPANRPLLNDWDDII-FALASRETQK 245
Query: 107 IRAAVLSKTQFHCSAGIAHNK 127
+R + + S GIA K
Sbjct: 246 MRDVIKESLGYTTSCGIARTK 266
>gi|448237926|ref|YP_007401984.1| DNA polymerase IV [Geobacillus sp. GHH01]
gi|445206768|gb|AGE22233.1| DNA polymerase IV [Geobacillus sp. GHH01]
Length = 409
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR R + L FS ++ERASIDE Y+D+T
Sbjct: 89 YREVSRRLFQCLQRFSPVLERASIDEGYLDMT 120
>gi|269214646|ref|ZP_05986970.2| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
gi|269209306|gb|EEZ75761.1| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
Length = 368
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 120 DEAYLDVTRNFKNIPYAGDVAKEIRAAIFAETGLTASAGIAPNK 163
>gi|407366093|ref|ZP_11112625.1| DNA polymerase IV [Pseudomonas mandelii JR-1]
Length = 353
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + ++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSDCAH 116
>gi|421540704|ref|ZP_15986846.1| DNA polymerase IV [Neisseria meningitidis 93004]
gi|402318254|gb|EJU53778.1| DNA polymerase IV [Neisseria meningitidis 93004]
Length = 352
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTHNFKNIPYAGEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|421862800|ref|ZP_16294504.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379710|emb|CBX21699.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 352
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYAGDVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|404255732|ref|ZP_10959700.1| DNA-directed DNA polymerase [Sphingomonas sp. PAMC 26621]
Length = 348
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 26/33 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ R++ A+ +EFS++++ S+DEAY+D+TD
Sbjct: 70 YKAVSRQIHAIFAEFSDLIQPLSLDEAYLDVTD 102
>gi|198283550|ref|YP_002219871.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248071|gb|ACH83664.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 374
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR A R+V+A+L ++ +VE S+DEA++D+T
Sbjct: 90 YREASRQVMAILRSYTPLVEPLSLDEAFLDVT 121
>gi|83033716|gb|ABB97311.1| DinB [Bacillus cereus]
Length = 133
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I + ++L
Sbjct: 6 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQVLLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|398798295|ref|ZP_10557596.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pantoea sp. GM01]
gi|398101012|gb|EJL91240.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pantoea sp. GM01]
Length = 343
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R++ + S ++ ++E S+DEAY+D+TD +H
Sbjct: 71 YKEASRQIRDIFSRYTALIEPLSLDEAYLDVTDSLH 106
>gi|427827542|ref|ZP_18994574.1| impB/mucB/samB family protein [Neisseria meningitidis H44/76]
gi|316984579|gb|EFV63544.1| impB/mucB/samB family protein [Neisseria meningitidis H44/76]
Length = 342
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 94 DEAYLDVTRNFKNIPYAGDVAKEIRAAIFAETGLTASAGIAPNK 137
>gi|93117305|gb|ABE99570.1| DinB [Neisseria meningitidis H44/76]
Length = 335
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYAGDVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|385852932|ref|YP_005899446.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|416196178|ref|ZP_11618024.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|433465393|ref|ZP_20422874.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|433490777|ref|ZP_20447897.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|433505380|ref|ZP_20462318.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|433507449|ref|ZP_20464355.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
gi|325140607|gb|EGC63127.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|325199936|gb|ADY95391.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|432202592|gb|ELK58651.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|432226697|gb|ELK82421.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|432240672|gb|ELK96206.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|432240723|gb|ELK96256.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
Length = 352
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYAGDVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|138895203|ref|YP_001125656.1| DNA polymerase IV [Geobacillus thermodenitrificans NG80-2]
gi|196248210|ref|ZP_03146911.1| DNA-directed DNA polymerase [Geobacillus sp. G11MC16]
gi|134266716|gb|ABO66911.1| DNA polymerase IV [Geobacillus thermodenitrificans NG80-2]
gi|196211935|gb|EDY06693.1| DNA-directed DNA polymerase [Geobacillus sp. G11MC16]
Length = 409
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR R + L FS ++ERASIDE Y+D+T
Sbjct: 89 YREVSRRLFQCLQRFSPVLERASIDEGYLDMT 120
>gi|195037641|ref|XP_001990269.1| GH18329 [Drosophila grimshawi]
gi|193894465|gb|EDV93331.1| GH18329 [Drosophila grimshawi]
Length = 758
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 26/129 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +++ +L ++ VE+ DE Y+D+T +V R H A +Q
Sbjct: 89 YRLMSQKIFDLLLNYTPDVEKLGFDENYMDVTALVDLRQ---AHAADAQ----------- 134
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQELAIAGVIVEEIRAAVLSKTQFHC 119
RK + G VY T L + Q LAI I +EIR + + C
Sbjct: 135 -------RKPAI----GHVYPADGTPLTACSCGCAQRLAIGTRIAQEIRDELHLRLGITC 183
Query: 120 SAGIAHNKV 128
AGIA+NK+
Sbjct: 184 CAGIAYNKL 192
>gi|402698832|ref|ZP_10846811.1| DNA polymerase IV [Pseudomonas fragi A22]
Length = 353
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ +L +++ ++E S+DEAY+D++D H
Sbjct: 81 YKEASREIHGILRDYTELIEPLSLDEAYLDVSDSPH 116
>gi|156041128|ref|XP_001587550.1| hypothetical protein SS1G_11543 [Sclerotinia sclerotiorum 1980]
gi|154695926|gb|EDN95664.1| hypothetical protein SS1G_11543 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 465
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDA----RKAGVME 74
+E+AS+DE +IDL+ VH + S QL+ D+N + + V+
Sbjct: 159 IEKASVDEVFIDLSAHVHSVLVS----RYPQLA--------VDDNVHGSLPLPPRDIVLH 206
Query: 75 WLGQVYSDTDTSLMENTE-DFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
W D TS + D+ E+A I IV +R + + CSAGIA NK
Sbjct: 207 WETDNLVDLPTSTDDTHRIDWDEIALNIGAQIVRNLRKEIFESLHYTCSAGIAQNK 262
>gi|385330478|ref|YP_005884429.1| DNA polymerase IV [Marinobacter adhaerens HP15]
gi|311693628|gb|ADP96501.1| DNA polymerase IV [Marinobacter adhaerens HP15]
Length = 354
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 27/34 (79%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR ++V+A+L E +++VE S+DEA++D++DV
Sbjct: 80 YRAVSQQVMAILRELTDLVEPLSLDEAFLDVSDV 113
>gi|358451322|ref|ZP_09161756.1| DNA-directed DNA polymerase [Marinobacter manganoxydans MnI7-9]
gi|357224555|gb|EHJ03086.1| DNA-directed DNA polymerase [Marinobacter manganoxydans MnI7-9]
Length = 354
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 27/34 (79%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR ++V+A+L E +++VE S+DEA++D++DV
Sbjct: 80 YRAVSQQVMAILRELTDLVEPLSLDEAFLDVSDV 113
>gi|71022115|ref|XP_761288.1| hypothetical protein UM05141.1 [Ustilago maydis 521]
gi|46097782|gb|EAK83015.1| hypothetical protein UM05141.1 [Ustilago maydis 521]
Length = 682
Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN-------- 52
Y A ++V+A+ ++ + +AS+DEAY+D+T+ V + SI + QL N
Sbjct: 219 YVQASQKVMAIFEQYDENLAKASLDEAYLDITEYVEQNASSIDQV-VQQLRNQVRSHTQL 277
Query: 53 TFVVGFGPD 61
T VG P+
Sbjct: 278 TVSVGIAPN 286
>gi|110803706|ref|YP_698855.1| DNA polymerase IV [Clostridium perfringens SM101]
gi|123047351|sp|Q0SSQ2.1|DPO4_CLOPS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|110684207|gb|ABG87577.1| DNA polymerase IV [Clostridium perfringens SM101]
Length = 359
Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-------------VHERM-KSIGHIA 46
Y+ R+V+ +L+E+SN+VE S+DEA++D++ + ER+ K +G A
Sbjct: 82 YKKVSRQVMNILNEYSNLVEPLSLDEAFVDVSKSKRCKGSATLIALEIKERIFKEVGLTA 141
Query: 47 ASQLS-NTFVVGFGPDNNDEDA 67
++ +S N F+ D D
Sbjct: 142 SAGVSFNKFLAKMASDFRKPDG 163
>gi|398987101|ref|ZP_10691851.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM24]
gi|399016028|ref|ZP_10718278.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM16]
gi|398106777|gb|EJL96795.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM16]
gi|398151124|gb|EJM39684.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM24]
Length = 353
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + +++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFADYTDLIEPLSLDEAYLDVSDSAH 116
>gi|294658426|ref|XP_460761.2| DEHA2F09196p [Debaryomyces hansenii CBS767]
gi|202953120|emb|CAG89102.2| DEHA2F09196p [Debaryomyces hansenii CBS767]
Length = 770
Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 29/147 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNT-----FV 55
YR R+++ + E+ ++VE+AS+DE ++D +++ + + ++ N +
Sbjct: 140 YRRESRKIMNIFREYCDLVEKASVDECFLDFGRMIYYTLLQLFPDLGDEVENINSNLPSI 199
Query: 56 VGFGPDNNDEDARKAGVMEWLGQVY---------SDTDTSLMENTEDFQE-----LAIAG 101
PD+ + W+G++ SD D L N ++ + I
Sbjct: 200 PSTLPDS----------LYWVGEIIKSEDEVPRNSDNDQDLKANDPRIRDWDDVCMLIGS 249
Query: 102 VIVEEIRAAVLSKTQFHCSAGIAHNKV 128
++ E+R V + + S G+ NK+
Sbjct: 250 QLLYEVRQQVFEELGYTTSGGLGKNKI 276
>gi|168187738|ref|ZP_02622373.1| DNA polymerase IV [Clostridium botulinum C str. Eklund]
gi|169294384|gb|EDS76517.1| DNA polymerase IV [Clostridium botulinum C str. Eklund]
Length = 347
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
Y+ R+V +LS+ +N +E+ SIDEAY+D+T++
Sbjct: 79 YKEISRKVFEILSKVTNKIEQVSIDEAYLDITNI 112
>gi|384539827|ref|YP_005723910.1| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti SM11]
gi|336035170|gb|AEH81101.1| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti SM11]
Length = 378
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT-------------DVVHERMKSIGHIAA 47
YR R++ A+ +E++ ++E S+DEAY+D+T + + R+K+ H+ A
Sbjct: 102 YRAVSRQIQAIFAEYTPLIEPLSLDEAYLDVTENLKGLRLATEIAEEIRTRIKAKTHLTA 161
Query: 48 SQ--LSNTFVVGFGPDNNDED 66
S N F+ D D
Sbjct: 162 SAGVSYNKFLAKMASDQRKPD 182
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ TE+ + L +A I EEIR + +KT SAG+++NK
Sbjct: 126 DEAYLDVTENLKGLRLATEIAEEIRTRIKAKTHLTASAGVSYNK 169
>gi|418324714|ref|ZP_12935944.1| DNA polymerase IV [Staphylococcus pettenkoferi VCU012]
gi|365224987|gb|EHM66242.1| DNA polymerase IV [Staphylococcus pettenkoferi VCU012]
Length = 356
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKS 41
YR A ++++A+ ++ IVE S+DEAY+D+T +V + +
Sbjct: 81 YREASQQIMAIFRSYTEIVEPLSLDEAYLDITHLVRPDLPA 121
>gi|361128232|gb|EHL00178.1| putative N-acetyltransferase eso1 [Glarea lozoyensis 74030]
Length = 298
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 21/139 (15%)
Query: 1 YRNAGREVIAVLSEFSNI----VERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSN 52
YR R ++A + E VE+AS+DE ++DL+ VH ER I A
Sbjct: 83 YRLESRRILACIKETLPADLQKVEKASVDEVFMDLSAQVHSILLERYPEISGPAPYD-DP 141
Query: 53 TFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE---LAIAGVIVEEIRA 109
T + P + ++W D D E+ + + + I IV +RA
Sbjct: 142 TEYLPLPP---------STALDWQADALIDLDVEETEDDDPDWDDVAILIGSEIVRNVRA 192
Query: 110 AVLSKTQFHCSAGIAHNKV 128
AV K ++ CS G+A NK+
Sbjct: 193 AVREKLKYTCSGGVAQNKM 211
>gi|406980559|gb|EKE02141.1| hypothetical protein ACD_20C00419G0004 [uncultured bacterium]
Length = 395
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAA 47
Y V+ VLSEFS I+E SIDEA+IDLT + KS IA+
Sbjct: 82 YGEISARVMRVLSEFSPIIEIYSIDEAFIDLTGLEKTYKKSYLEIAS 128
>gi|226940752|ref|YP_002795826.1| DNA polymerase IV [Laribacter hongkongensis HLHK9]
gi|226715679|gb|ACO74817.1| DNA-damage-inducible protein P [Laribacter hongkongensis HLHK9]
Length = 355
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A + ++++ EF+ +VE S+DEAY+D+T H
Sbjct: 83 YRAASQHILSIYREFTPLVEPLSLDEAYLDVTSQPH 118
>gi|169342868|ref|ZP_02863899.1| DNA polymerase IV [Clostridium perfringens C str. JGS1495]
gi|169299125|gb|EDS81197.1| DNA polymerase IV [Clostridium perfringens C str. JGS1495]
Length = 359
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-------------VHERM-KSIGHIA 46
Y+ R+V+ +L+E+SN+VE S+DEA++D++ + ER+ K +G A
Sbjct: 82 YKKVSRQVMNILNEYSNLVEPLSLDEAFVDVSKSKRCKGSATLMALEIKERIFKEVGLTA 141
Query: 47 ASQLS-NTFVVGFGPDNNDEDA 67
++ +S N F+ D D
Sbjct: 142 SAGVSFNKFLAKMASDFRKPDG 163
>gi|15677305|ref|NP_274460.1| DNA polymerase IV [Neisseria meningitidis MC58]
gi|22095639|sp|Q9JYS8.1|DPO4_NEIMB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|7226689|gb|AAF41808.1| DNA-damage-inducible protein P [Neisseria meningitidis MC58]
Length = 318
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYAGDVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|399521251|ref|ZP_10761991.1| DNA-directed DNA polymerase [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399110489|emb|CCH38550.1| DNA-directed DNA polymerase [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 361
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR+ R++ + +F++++E S+DEAY+D++D H
Sbjct: 90 YRSVSRDIHGIFRQFTDLIEPLSLDEAYLDVSDSAH 125
>gi|212534508|ref|XP_002147410.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
marneffei ATCC 18224]
gi|210069809|gb|EEA23899.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
marneffei ATCC 18224]
Length = 673
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAG----VME 74
+E+AS+DE +IDL+ +V+ ++ + +L P D+ +E
Sbjct: 178 IEKASVDEVFIDLSSLVY----AVLYQRYPELRR------APTTFDKTTSLPTPPTTALE 227
Query: 75 WL---GQVYSDTDTSLMENTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W G V D + E+ D+ ++A I I IRA + K + CSAGIA NK+
Sbjct: 228 WFPEDGLVDLD-ERETEEDDPDWDDVAMLIGAEITRSIRAVIWDKLSYTCSAGIARNKM 285
>gi|326386774|ref|ZP_08208395.1| DNA polymerase IV [Novosphingobium nitrogenifigens DSM 19370]
gi|326208827|gb|EGD59623.1| DNA polymerase IV [Novosphingobium nitrogenifigens DSM 19370]
Length = 380
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT-------------DVVHERMKS-IGHIA 46
YR R++ AV +++ +VE S+DEAY+D+T +++ +R+++ G A
Sbjct: 92 YRAVSRQIHAVFRDYTPLVEPLSLDEAYLDVTADLRGIGSATRIAEIIRQRIRAETGLTA 151
Query: 47 ASQLS-NTFVVGFGPDNNDEDA 67
++ +S N F+ D N D
Sbjct: 152 SAGVSYNKFLAKLASDQNKPDG 173
>gi|317047050|ref|YP_004114698.1| DNA-directed DNA polymerase [Pantoea sp. At-9b]
gi|316948667|gb|ADU68142.1| DNA-directed DNA polymerase [Pantoea sp. At-9b]
Length = 351
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R++ + + +++++E S+DEAY+D+TD H
Sbjct: 79 YKEASRQIRTIFARYTSLIEPLSLDEAYLDVTDSPH 114
>gi|421887936|ref|ZP_16319060.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [Ralstonia solanacearum K60-1]
gi|378966697|emb|CCF95808.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [Ralstonia solanacearum K60-1]
Length = 362
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 84 YRQVARQIFAIYQSYTPLVEPLSLDEAYLDVTD 116
>gi|421898125|ref|ZP_16328492.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum MolK2]
gi|206589331|emb|CAQ36293.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum MolK2]
Length = 357
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 79 YRQVARQIFAIYQSYTPLVEPLSLDEAYLDVTD 111
>gi|110799334|ref|YP_696252.1| DNA polymerase IV [Clostridium perfringens ATCC 13124]
gi|123344702|sp|Q0TQ38.1|DPO4_CLOP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|110673981|gb|ABG82968.1| DNA polymerase IV [Clostridium perfringens ATCC 13124]
Length = 359
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-------------VHERM-KSIGHIA 46
Y+ R+V+ +L+E+SN+VE S+DEA++D++ + ER+ K +G A
Sbjct: 82 YKKVSRQVMNILNEYSNLVEHLSLDEAFVDVSKSKRCKGSATLMALEIKERIFKEVGLTA 141
Query: 47 ASQLS-NTFVVGFGPDNNDEDA 67
++ +S N F+ D D
Sbjct: 142 SAGVSFNKFLAKMASDFRKPDG 163
>gi|422874487|ref|ZP_16920972.1| DNA polymerase IV [Clostridium perfringens F262]
gi|380304560|gb|EIA16848.1| DNA polymerase IV [Clostridium perfringens F262]
Length = 359
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-------------VHERM-KSIGHIA 46
Y+ R+V+ +L+E+SN+VE S+DEA++D++ + ER+ K +G A
Sbjct: 82 YKKVSRQVMNILNEYSNLVEPLSLDEAFVDVSKSKRCKGSATLMALEIKERIFKEVGLTA 141
Query: 47 ASQLS-NTFVVGFGPDNNDEDA 67
++ +S N F+ D D
Sbjct: 142 SAGVSFNKFLAKMASDFRKPDG 163
>gi|344174560|emb|CCA86359.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [Ralstonia syzygii R24]
Length = 362
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 84 YRQVARQIFAIYQSYTPLVEPLSLDEAYLDVTD 116
>gi|386333331|ref|YP_006029500.1| DNA polymerase iv, devoid of proofreading, damage-inducible protein
p [Ralstonia solanacearum Po82]
gi|334195778|gb|AEG68963.1| DNA polymerase iv, devoid of proofreading, damage-inducible protein
p [Ralstonia solanacearum Po82]
Length = 362
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 84 YRQVARQIFAIYQSYTPLVEPLSLDEAYLDVTD 116
>gi|329912315|ref|ZP_08275726.1| DNA polymerase IV [Oxalobacteraceae bacterium IMCC9480]
gi|327545647|gb|EGF30803.1| DNA polymerase IV [Oxalobacteraceae bacterium IMCC9480]
Length = 372
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 15/83 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-------------VHERMKSIGHIAA 47
YR A ++++A+ +++++VE S+DEAY+D+TD + R+++ I A
Sbjct: 84 YRLASQQILAIYRDYTDLVEPLSLDEAYLDVTDATRHGGSATLIAQEIRARIEATVGITA 143
Query: 48 SQ--LSNTFVVGFGPDNNDEDAR 68
S N F+ D N D +
Sbjct: 144 SAGIAPNKFIAKVASDWNKPDGQ 166
>gi|300703898|ref|YP_003745500.1| DNA polymerase iv, devoid of proofreading, damage-inducible protein
p [Ralstonia solanacearum CFBP2957]
gi|299071561|emb|CBJ42885.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum CFBP2957]
Length = 362
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 84 YRQVARQIFAIYQSYTPLVEPLSLDEAYLDVTD 116
>gi|388543762|ref|ZP_10147052.1| DNA polymerase IV [Pseudomonas sp. M47T1]
gi|388278319|gb|EIK97891.1| DNA polymerase IV [Pseudomonas sp. M47T1]
Length = 355
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ + E+++++E S+DEAY+D+++ H
Sbjct: 81 YKEASREIHGIFREYTDLIEPLSLDEAYLDVSECPH 116
>gi|422346234|ref|ZP_16427148.1| DNA polymerase IV [Clostridium perfringens WAL-14572]
gi|373226856|gb|EHP49178.1| DNA polymerase IV [Clostridium perfringens WAL-14572]
Length = 359
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-------------VHERM-KSIGHIA 46
Y+ R+V+ +L+E+SN+VE S+DEA++D++ + ER+ K +G A
Sbjct: 82 YKKVSRQVMNILNEYSNLVEPLSLDEAFVDVSKSKRCKGSATLMALEIKERIFKEVGLTA 141
Query: 47 ASQLS-NTFVVGFGPDNNDEDA 67
++ +S N F+ D D
Sbjct: 142 SAGVSFNKFLAKMASDFRKPDG 163
>gi|427415202|ref|ZP_18905387.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Leptolyngbya sp. PCC 7375]
gi|425755967|gb|EKU96826.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Leptolyngbya sp. PCC 7375]
Length = 420
Score = 39.3 bits (90), Expect = 0.58, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI---AASQLSNTFV-V 56
Y++ R VI L +FS VE+ SIDEA++ L H + GH Q +N V V
Sbjct: 76 YKDMSRRVIETLQQFSPEVEQYSIDEAFLGLGGFTHLDLTDYGHTIRHTVKQWTNIPVSV 135
Query: 57 GFGP 60
G P
Sbjct: 136 GIAP 139
>gi|242371796|ref|ZP_04817370.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
gi|242350497|gb|EES42098.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
Length = 356
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN 52
YR A ++++ + ++ IVE S+DEAY+D+T +V M AS+++N
Sbjct: 81 YREASQQIMEIFRSYTEIVEPMSLDEAYLDITHLVRPDM------PASRIAN 126
>gi|83745844|ref|ZP_00942901.1| DNA polymerase IV [Ralstonia solanacearum UW551]
gi|83727534|gb|EAP74655.1| DNA polymerase IV [Ralstonia solanacearum UW551]
Length = 362
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 84 YRQVARQIFAIYQSYTPLVEPLSLDEAYLDVTD 116
>gi|410465504|ref|ZP_11318750.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio magneticus str. Maddingley MBC34]
gi|409981467|gb|EKO38032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio magneticus str. Maddingley MBC34]
Length = 394
Score = 39.3 bits (90), Expect = 0.59, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y R V+A L FS +VE ASIDEAY+D+T
Sbjct: 77 YSEVSRLVMATLGRFSPLVEPASIDEAYVDIT 108
>gi|207742975|ref|YP_002259367.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum IPO1609]
gi|206594371|emb|CAQ61298.1| dna polymerase iv (pol iv) protein [Ralstonia solanacearum IPO1609]
Length = 357
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 79 YRQVARQIFAIYQSYTPLVEPLSLDEAYLDVTD 111
>gi|171676163|ref|XP_001903035.1| hypothetical protein [Podospora anserina S mat+]
gi|170936147|emb|CAP60807.1| unnamed protein product [Podospora anserina S mat+]
Length = 696
Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 1 YRNAGREVIAVLSEFS-----NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFV 55
YR R ++ V+ E VE+ASIDE ++DLT VH+ M +L
Sbjct: 144 YRLESRRIMRVIKEHLPGGGLQKVEKASIDEVFLDLTAHVHQVML---ERYGEELGGPPP 200
Query: 56 VGFGPDNNDEDARK-AGVMEWLGQVYSDTDTSLMENTE----DFQELA--IAGVIVEEIR 108
G D ++E ++W D + E D+ ++A +A IV +R
Sbjct: 201 YG---DVSEELPMPVVTALDWKADALVDLGEGDRQEGEFDDPDWDDVALLVASEIVRNVR 257
Query: 109 AAVLSKTQFHCSAGIAHNKV 128
+ K + CSAG++ NK+
Sbjct: 258 GVIREKLGYSCSAGVSRNKL 277
>gi|333897923|ref|YP_004471797.1| DNA polymerase IV [Thermoanaerobacterium xylanolyticum LX-11]
gi|333113188|gb|AEF18125.1| DNA polymerase IV [Thermoanaerobacterium xylanolyticum LX-11]
Length = 379
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR +V +L E ++IVE SIDEAY+D+TD+
Sbjct: 79 YREVSEKVFDILYEVTDIVEPLSIDEAYLDVTDI 112
>gi|78358660|ref|YP_390109.1| DNA-directed DNA polymerase [Desulfovibrio alaskensis G20]
gi|78221065|gb|ABB40414.1| DNA-directed DNA polymerase [Desulfovibrio alaskensis G20]
Length = 385
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y+ +V+ VL EFS +VE+AS+DEAY+D T
Sbjct: 73 YKEISAQVMQVLHEFSPLVEQASVDEAYLDAT 104
>gi|332291792|ref|YP_004430401.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
gi|332169878|gb|AEE19133.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
Length = 423
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
Y + V+ VL +FS VE SIDE+++DL+ + H +++ GH Q+ +T V G
Sbjct: 78 YGDMSDRVMNVLRDFSPAVEVYSIDESFVDLSGITHVNLETYGH----QIKDTVVRSTG 132
>gi|449683767|ref|XP_002159424.2| PREDICTED: DNA polymerase kappa-like [Hydra magnipapillata]
Length = 640
Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 49/128 (38%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
Y+ E+ + E+ + + S+DEAY+DLTD +
Sbjct: 205 YQQVSLEIQEIFKEYDSNYLQLSLDEAYLDLTDYIK------------------------ 240
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
++ S + +DF E ++VEEIR+ V KT+ CS
Sbjct: 241 --------------------NNAPVSEFQTEKDFVE-----IVVEEIRSKVFEKTKLTCS 275
Query: 121 AGIAHNKV 128
AGIA N +
Sbjct: 276 AGIAPNTM 283
>gi|384245122|gb|EIE18617.1| DNA/RNA polymerase, partial [Coccomyxa subellipsoidea C-169]
Length = 184
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKS-------IGHIAASQLSN 52
YR A ++++ VL F + ER +DE ++D+T+ V RM IGH+ S++ +
Sbjct: 47 YRQASKQILGVLQRF-GVAERLGMDEVFLDVTEEVRSRMAKGMFAPAFIGHMHTSRVRS 104
>gi|126665091|ref|ZP_01736074.1| DNA polymerase IV [Marinobacter sp. ELB17]
gi|126630461|gb|EBA01076.1| DNA polymerase IV [Marinobacter sp. ELB17]
Length = 335
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 27/34 (79%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR ++V+A+L E +++VE S+DEA++D++DV
Sbjct: 61 YRAVSQQVMAILREVTDLVEPLSLDEAFLDVSDV 94
>gi|168213536|ref|ZP_02639161.1| DNA polymerase IV [Clostridium perfringens CPE str. F4969]
gi|168217689|ref|ZP_02643314.1| DNA polymerase IV [Clostridium perfringens NCTC 8239]
gi|170714869|gb|EDT27051.1| DNA polymerase IV [Clostridium perfringens CPE str. F4969]
gi|182380253|gb|EDT77732.1| DNA polymerase IV [Clostridium perfringens NCTC 8239]
Length = 359
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-------------VHERM-KSIGHIA 46
Y+ R+V+ +L+E+SN+VE S+DEA++D++ + ER+ K +G A
Sbjct: 82 YKKVSRQVMNILNEYSNLVEPLSLDEAFVDVSKSKRCKGSATLIALEIKERIFKEVGLTA 141
Query: 47 ASQLS-NTFVVGFGPDNNDEDA 67
++ +S N F+ D D
Sbjct: 142 SAGVSFNKFLAKMASDFRKPDG 163
>gi|168206793|ref|ZP_02632798.1| DNA polymerase IV [Clostridium perfringens E str. JGS1987]
gi|170661821|gb|EDT14504.1| DNA polymerase IV [Clostridium perfringens E str. JGS1987]
Length = 359
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y+ R+V+ +L+E+SN+VE S+DEA++D++
Sbjct: 82 YKKVSRQVMNILNEYSNLVEPLSLDEAFVDVS 113
>gi|157114087|ref|XP_001657975.1| DNA polymerase iota [Aedes aegypti]
gi|108877445|gb|EAT41670.1| AAEL006715-PA [Aedes aegypti]
Length = 654
Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 33/137 (24%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
Y+ ++ ++ +F+ VE+ +DE Y+D+T ++++++ + QL N V GF
Sbjct: 89 YKQMSAKIHEIMHKFTPNVEKLGLDENYLDVTREINDQLEQ--KLNLEQLQN--VEGF-- 142
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDF---------QELAIAGVIVEEIRAAV 111
+Y + S + + E F + L +A + ++IR +
Sbjct: 143 ------------------IYPPKEDSNLSDQEVFRRACSCGCDRRLILASHMAKQIRDRI 184
Query: 112 LSKTQFHCSAGIAHNKV 128
+ C AGIAHNK+
Sbjct: 185 FCELGMKCCAGIAHNKL 201
>gi|334318683|ref|YP_004551242.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
gi|334099110|gb|AEG57119.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
Length = 378
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT-------------DVVHERMKSIGHIAA 47
YR R++ A+ +E++ ++E S+DEAY+D+T + + R+K+ H+ A
Sbjct: 102 YRAVSRQIQAIFAEYTPLIEPLSLDEAYLDVTENLKGLRLATEIAEEIRTRIKAETHLTA 161
Query: 48 SQ--LSNTFVVGFGPDNNDED 66
S N F+ D D
Sbjct: 162 SAGVSYNKFLAKMASDQRKPD 182
Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ TE+ + L +A I EEIR + ++T SAG+++NK
Sbjct: 126 DEAYLDVTENLKGLRLATEIAEEIRTRIKAETHLTASAGVSYNK 169
>gi|283458391|ref|YP_003363015.1| DNA repair nucleotidyltransferase/DNA polymerase [Rothia
mucilaginosa DY-18]
gi|283134430|dbj|BAI65195.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rothia mucilaginosa DY-18]
Length = 479
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR+ R V+A+L++ S VE+ S+DEA++DLT
Sbjct: 101 YRHYSRAVMAILNDLSPYVEQVSVDEAFVDLT 132
>gi|261419923|ref|YP_003253605.1| DNA polymerase IV [Geobacillus sp. Y412MC61]
gi|319766737|ref|YP_004132238.1| DNA-directed DNA polymerase [Geobacillus sp. Y412MC52]
gi|261376380|gb|ACX79123.1| DNA-directed DNA polymerase [Geobacillus sp. Y412MC61]
gi|317111603|gb|ADU94095.1| DNA-directed DNA polymerase [Geobacillus sp. Y412MC52]
Length = 414
Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD---------VVHERMKSIGHIAASQLS 51
YR R + L FS ++ERASIDE Y+D+T V H+ + + QLS
Sbjct: 89 YREMSRRMFQWLERFSPVLERASIDEGYLDMTGRTPTVHPLAVAHQIQRGL----LEQLS 144
Query: 52 NTFVVGFGPD 61
+G P+
Sbjct: 145 IPVSIGIAPN 154
>gi|424921752|ref|ZP_18345113.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas fluorescens R124]
gi|404302912|gb|EJZ56874.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas fluorescens R124]
Length = 353
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + ++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSDSAH 116
>gi|399543970|ref|YP_006557278.1| DNA polymerase IV [Marinobacter sp. BSs20148]
gi|399159302|gb|AFP29865.1| DNA polymerase IV [Marinobacter sp. BSs20148]
Length = 354
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 27/34 (79%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR ++V+A+L E +++VE S+DEA++D++DV
Sbjct: 80 YRAVSQQVMAILREVTDLVEPLSLDEAFLDVSDV 113
>gi|398968009|ref|ZP_10682157.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM30]
gi|398144218|gb|EJM33066.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM30]
Length = 353
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + ++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSDSAH 116
>gi|168209362|ref|ZP_02634987.1| DNA polymerase IV [Clostridium perfringens B str. ATCC 3626]
gi|170712467|gb|EDT24649.1| DNA polymerase IV [Clostridium perfringens B str. ATCC 3626]
Length = 359
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y+ R+V+ +L+E+SN+VE S+DEA++D++
Sbjct: 82 YKKVSRQVMNILNEYSNLVEPLSLDEAFVDVS 113
>gi|444729661|gb|ELW70070.1| DNA polymerase iota [Tupaia chinensis]
Length = 617
Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 25/118 (21%)
Query: 11 VLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKA 70
+L EFS +VER DE ++DLT++V +R++ + +DE
Sbjct: 15 LLEEFSPVVERLGFDENFVDLTEMVEKRLQQL-------------------QSDE----L 51
Query: 71 GVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
M G VY++ +L + L I I E+R A+ ++ AG+A NK+
Sbjct: 52 PTMTVSGHVYNNQYINLHDILH--IRLLIGSHIAAEMREAMYNQLGLTGCAGVASNKL 107
>gi|407690031|ref|YP_006813615.1| DNA polymerase IV 2 [Sinorhizobium meliloti Rm41]
gi|407321206|emb|CCM69808.1| DNA polymerase IV 2 [Sinorhizobium meliloti Rm41]
Length = 378
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT-------------DVVHERMKSIGHIAA 47
YR R++ A+ +E++ ++E S+DEAY+D+T + + R+K+ H+ A
Sbjct: 102 YRAVSRQIQAIFAEYTPLIEPLSLDEAYLDVTENLKGLRLATEIAEEIRTRIKAETHLTA 161
Query: 48 SQ--LSNTFVVGFGPDNNDED 66
S N F+ D D
Sbjct: 162 SAGVSYNKFLAKMASDQRKPD 182
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ TE+ + L +A I EEIR + ++T SAG+++NK
Sbjct: 126 DEAYLDVTENLKGLRLATEIAEEIRTRIKAETHLTASAGVSYNK 169
>gi|344303222|gb|EGW33496.1| DNA polymerase eta subunit [Spathaspora passalidarum NRRL Y-27907]
Length = 703
Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM 39
YR R+++ ++ + ++VE+AS+DE+YID ++E+M
Sbjct: 142 YRRESRKIVRLIQQRFDLVEKASVDESYIDFGRKIYEKM 180
>gi|50122391|ref|YP_051558.1| DNA polymerase IV [Pectobacterium atrosepticum SCRI1043]
gi|81644156|sp|Q6D1H8.1|DPO4_ERWCT RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49612917|emb|CAG76367.1| DNA polymerase IV [Pectobacterium atrosepticum SCRI1043]
Length = 352
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y++ R++ + S +++++E S+DEAY+D+TD H
Sbjct: 79 YKSTSRQIREIFSRYTSLIEPLSLDEAYLDVTDSPH 114
>gi|398942972|ref|ZP_10670610.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM41(2012)]
gi|398159903|gb|EJM48189.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM41(2012)]
Length = 353
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + ++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSDSAH 116
>gi|398842065|ref|ZP_10599265.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM102]
gi|398106599|gb|EJL96624.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM102]
Length = 353
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + ++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSDSAH 116
>gi|320169035|gb|EFW45934.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 893
Score = 38.9 bits (89), Expect = 0.71, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 97 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
L A I EIR AVL++ FHCSAGIA NK+
Sbjct: 461 LWFAAQITLEIRNAVLNQLDFHCSAGIAENKM 492
>gi|424725316|ref|YP_007013399.1| Hypothetical protein [Agrobacterium tumefaciens]
gi|418434494|gb|AFX65586.1| Hypothetical protein [Agrobacterium tumefaciens]
Length = 364
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 37
YR R++ + +E++++VE S+DEAY+D+T+ + E
Sbjct: 84 YREVSRQICEIFAEYTSLVEPLSLDEAYLDVTENLKE 120
>gi|398844050|ref|ZP_10601157.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM84]
gi|398254934|gb|EJN39984.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM84]
Length = 354
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ A+ +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHAIFRDYTELIEPLSLDEAYLDVSD 113
>gi|398859911|ref|ZP_10615576.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM79]
gi|398235847|gb|EJN21654.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM79]
Length = 353
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + ++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSDSAH 116
>gi|398884534|ref|ZP_10639467.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM60]
gi|398194343|gb|EJM81419.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM60]
Length = 353
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + ++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSDSAH 116
>gi|399003145|ref|ZP_10705816.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM18]
gi|398123549|gb|EJM13098.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM18]
Length = 353
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + ++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSDSAH 116
>gi|436840478|ref|YP_007324856.1| DNA polymerase IV [Desulfovibrio hydrothermalis AM13 = DSM 14728]
gi|432169384|emb|CCO22752.1| DNA polymerase IV [Desulfovibrio hydrothermalis AM13 = DSM 14728]
Length = 389
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y+ +V+ VL +S +VE+ASIDEAY+D+T
Sbjct: 79 YKEISDQVMKVLGNYSPVVEQASIDEAYLDIT 110
>gi|398902793|ref|ZP_10651247.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM50]
gi|398177886|gb|EJM65547.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM50]
Length = 353
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + ++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSDSAH 116
>gi|398877393|ref|ZP_10632539.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM67]
gi|398202556|gb|EJM89397.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM67]
Length = 353
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + ++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSDSAH 116
>gi|227329181|ref|ZP_03833205.1| DNA polymerase IV [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 352
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y++ R++ + S +++++E S+DEAY+D+TD H
Sbjct: 79 YKSTSRQIREIFSRYTSLIEPLSLDEAYLDVTDSPH 114
>gi|47207447|emb|CAF91845.1| unnamed protein product [Tetraodon nigroviridis]
Length = 257
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 28/128 (21%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L + +VER DE ++D+T++V R+ S+L +F
Sbjct: 81 YREVSYKVTELLMSYCPLVERLGFDENFMDVTEMVERRLAE-----TSELDISFK----- 130
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY + D LA+ I E+R A+ K
Sbjct: 131 ----------------GHVYGHVSAEV--KATDHARLALGSHIAAELREAIHCKLGLTGC 172
Query: 121 AGIAHNKV 128
AGIA NK+
Sbjct: 173 AGIATNKL 180
>gi|358052928|ref|ZP_09146734.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
gi|357257587|gb|EHJ07838.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
Length = 356
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLS 51
YR ++++A+ +++ VE S+DEAY+D+TD+V + ASQ++
Sbjct: 81 YRKISQQIMAIFRSYTDKVEPMSLDEAYLDITDLVRP------DLPASQIA 125
>gi|158320707|ref|YP_001513214.1| DNA-directed DNA polymerase [Alkaliphilus oremlandii OhILAs]
gi|189027656|sp|A8MGJ5.1|DPO4_ALKOO RecName: Full=DNA polymerase IV; Short=Pol IV
gi|158140906|gb|ABW19218.1| DNA-directed DNA polymerase [Alkaliphilus oremlandii OhILAs]
Length = 398
Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 26/32 (81%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR EV+ +LS+++ I+E++SIDEA++D+T
Sbjct: 81 YRQKSSEVMNLLSKYTPIIEQSSIDEAWLDMT 112
>gi|45383754|ref|NP_989514.1| DNA polymerase kappa [Gallus gallus]
gi|26983954|gb|AAM80560.1| DNA polymerase kappa [Gallus gallus]
Length = 867
Score = 38.5 bits (88), Expect = 0.79, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +EV +L+E+ +DEAY+++T+ + ER+ L+
Sbjct: 175 YRKVSKEVKEILAEYDPHFMPMGLDEAYLNVTEHLEERLNWPEDKRRYFLNTENTT---- 230
Query: 61 DNNDEDARKAGVMEWLGQVYS----DTDTSLMENTEDFQELAIAGVI---------VEEI 107
+ N ED G + G S + TS+M++ ++ ++ V+ V+EI
Sbjct: 231 EKNKEDINIPGTVNIDGYSSSPELFEDGTSVMDDDSGQRDQSLKNVVVFGTSAEEAVKEI 290
Query: 108 RAAVLSKTQFHCSAGIAHNKV 128
R + KTQ SAGIA N +
Sbjct: 291 RFRIEQKTQLTASAGIAPNTM 311
>gi|325274561|ref|ZP_08140619.1| DNA polymerase IV [Pseudomonas sp. TJI-51]
gi|324100288|gb|EGB98076.1| DNA polymerase IV [Pseudomonas sp. TJI-51]
Length = 354
Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ A+ +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHAIFRDYTELIEPLSLDEAYLDVSD 113
>gi|118442868|ref|YP_878523.1| ImpB/MucB/SamB family protein [Clostridium novyi NT]
gi|118133324|gb|ABK60368.1| ImpB/MucB/SamB family [Clostridium novyi NT]
Length = 265
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR R+V +LS ++ +E+ SIDEAY+D+T++
Sbjct: 83 YREVSRKVFKILSTVTDKIEQVSIDEAYLDITNI 116
>gi|218282384|ref|ZP_03488666.1| hypothetical protein EUBIFOR_01248 [Eubacterium biforme DSM 3989]
gi|218216670|gb|EEC90208.1| hypothetical protein EUBIFOR_01248 [Eubacterium biforme DSM 3989]
Length = 325
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 42
YR+ + A L F++ +E ASIDE Y+D+TD++ + +
Sbjct: 79 YRSMSAQFFACLKTFTHQIEPASIDECYMDVTDIIKRYKRPL 120
>gi|119479517|ref|XP_001259787.1| sister chromatid cohesion protein (Eso1), putative [Neosartorya
fischeri NRRL 181]
gi|119407941|gb|EAW17890.1| sister chromatid cohesion protein (Eso1), putative [Neosartorya
fischeri NRRL 181]
Length = 673
Score = 38.5 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDAR----KAGVME 74
+E+ASIDE +IDL+ +V+ + +L N GP + +E
Sbjct: 183 LEKASIDEVFIDLSPLVYALLLQ----RYPELRN------GPQGDGRSTPLPRPPTTALE 232
Query: 75 WLGQ-VYSDTDTSLME-NTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W + D D + E + D+ ++A I IV +R AV +K + CS G+A NK+
Sbjct: 233 WSTEDCLIDLDENETEVDDPDWDDIAMLIGSEIVRSVRTAVWNKLSYTCSGGVARNKM 290
>gi|309775478|ref|ZP_07670480.1| DNA-damage-inducible protein P [Erysipelotrichaceae bacterium
3_1_53]
gi|308916774|gb|EFP62512.1| DNA-damage-inducible protein P [Erysipelotrichaceae bacterium
3_1_53]
Length = 393
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 42
Y L FSN++E ASIDE Y+D+TDV+ + + +
Sbjct: 80 YEELSNRFFKYLRRFSNLIEPASIDECYMDVTDVIKDYKRPL 121
>gi|378578498|ref|ZP_09827173.1| DNA polymerase IV [Pantoea stewartii subsp. stewartii DC283]
gi|377818778|gb|EHU01859.1| DNA polymerase IV [Pantoea stewartii subsp. stewartii DC283]
Length = 351
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A ++ A+ S +++++E S+DEAY+D+TD H
Sbjct: 79 YKEASSQIRAIFSRYTSLIEPLSLDEAYLDVTDSQH 114
>gi|433615571|ref|YP_007192366.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sinorhizobium meliloti GR4]
gi|429553818|gb|AGA08767.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sinorhizobium meliloti GR4]
Length = 369
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ +E++ +VE S+DEAY+D+T+
Sbjct: 93 YRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTE 125
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ TE+F+ L +A I EEIR + ++T SAG+++NK
Sbjct: 117 DEAYLDVTENFRGLKLATEIAEEIRGRIRAETHLTASAGVSYNK 160
>gi|414595480|ref|ZP_11445100.1| DNA polymerase IV [Escherichia blattae NBRC 105725]
gi|403193564|dbj|GAB82752.1| DNA polymerase IV [Escherichia blattae NBRC 105725]
Length = 352
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ A R++ A+ + ++ ++E S+DEAY+D+TD
Sbjct: 80 YKEASRQIQAIFARYTPLIEPLSLDEAYLDVTD 112
>gi|193782767|ref|NP_436520.4| DNA polymerase IV [Sinorhizobium meliloti 1021]
gi|193073223|gb|AAK65932.2| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti 1021]
Length = 369
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ +E++ +VE S+DEAY+D+T+
Sbjct: 93 YRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTE 125
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ TE+F+ L +A I EEIR + ++T SAG+++NK
Sbjct: 117 DEAYLDVTENFRGLKLATEIAEEIRGRIRAETHLTASAGVSYNK 160
>gi|187929043|ref|YP_001899530.1| DNA polymerase IV [Ralstonia pickettii 12J]
gi|187725933|gb|ACD27098.1| DNA-directed DNA polymerase [Ralstonia pickettii 12J]
Length = 357
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 79 YRQVARQIFAIYHSYTPLVEPLSLDEAYLDVTD 111
>gi|392594879|gb|EIW84203.1| DNA polymerase eta [Coniophora puteana RWD-64-598 SS2]
Length = 623
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 29/146 (19%)
Query: 1 YRNAGREVIAVLSEF--SNIVERASIDEAYIDLT----DVVHERMKSIGHIAASQLSNTF 54
YR +++ V E + +E+ASIDEA+IDLT D + ER + +I +
Sbjct: 143 YRRESAKIMNVFKEMLPNGEIEKASIDEAFIDLTQPVRDTILERYPYLANIPPN------ 196
Query: 55 VVGFGPDNNDEDARKAGV-MEWLGQVY------------SDTDTSLMENTEDFQELAIAG 101
P D + ++W +V+ S D S T L IA
Sbjct: 197 ----APQGADTPLPSPPLELDWADKVHLIPILPSDDGDDSPKDESEFPPTWHDVALCIAA 252
Query: 102 VIVEEIRAAVLSKTQFHCSAGIAHNK 127
+ ++R VL + SAG+A NK
Sbjct: 253 EFMTKMRKQVLDTLGYSTSAGLARNK 278
>gi|384531775|ref|YP_005717379.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C]
gi|333813951|gb|AEG06619.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C]
Length = 369
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ TE+F+ L +A I EEIR + ++T SAGI++NK
Sbjct: 117 DEAYLDVTENFRGLKLATEIAEEIRGRIRAETHLTASAGISYNK 160
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ +E++ +VE S+DEAY+D+T+
Sbjct: 93 YRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTE 125
>gi|205373932|ref|ZP_03226733.1| DNA polymerase IV [Bacillus coahuilensis m4-4]
Length = 400
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR+A + + +L F+++VE SIDE Y+D+TD
Sbjct: 88 YRDASKGMFDILRSFTHLVEPVSIDEGYMDITD 120
>gi|241663231|ref|YP_002981591.1| DNA polymerase IV [Ralstonia pickettii 12D]
gi|240865258|gb|ACS62919.1| DNA-directed DNA polymerase [Ralstonia pickettii 12D]
Length = 357
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 79 YRQVARQIFAIYHSYTPLVEPLSLDEAYLDVTD 111
>gi|398996644|ref|ZP_10699495.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM21]
gi|398126227|gb|EJM15670.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM21]
Length = 353
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + ++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFRDYTDMIEPLSLDEAYLDVSDSAH 116
>gi|344167777|emb|CCA80020.1| DNA polymerase IV, devoid of proofreading,damage-inducible
protein P [blood disease bacterium R229]
Length = 318
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 40 YRQVARQIFAIYQGYTPLVEPLSLDEAYLDVTD 72
>gi|309782562|ref|ZP_07677285.1| DNA-directed DNA polymerase [Ralstonia sp. 5_7_47FAA]
gi|308918653|gb|EFP64327.1| DNA-directed DNA polymerase [Ralstonia sp. 5_7_47FAA]
Length = 357
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 79 YRQVARQIFAIYHSYTPLVEPLSLDEAYLDVTD 111
>gi|387890406|ref|YP_006320704.1| DNA polymerase IV [Escherichia blattae DSM 4481]
gi|386925239|gb|AFJ48193.1| DNA polymerase IV [Escherichia blattae DSM 4481]
Length = 351
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ A R++ A+ + ++ ++E S+DEAY+D+TD
Sbjct: 79 YKEASRQIQAIFARYTPLIEPLSLDEAYLDVTD 111
>gi|389579184|ref|ZP_10169211.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfobacter postgatei 2ac9]
gi|389400819|gb|EIM63041.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfobacter postgatei 2ac9]
Length = 490
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 18/90 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYID------LTDVVHERMKSIGHIAASQLSNTF 54
Y R+++A+L +FS +VE SIDEA++D L + K I +QL+ T
Sbjct: 76 YARDSRKIMAILRQFSPLVEPVSIDEAFLDIRGCEKLIGTPEQAAKKIKFEIFNQLALTC 135
Query: 55 VVGFGPDNNDEDARKAGVMEWLGQVYSDTD 84
VG P + +L ++ SD D
Sbjct: 136 SVGGAP------------VRFLAKIASDMD 153
>gi|22095624|sp|Q92XH8.2|DPO42_RHIME RecName: Full=DNA polymerase IV 2; Short=Pol IV 2
Length = 354
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ +E++ +VE S+DEAY+D+T+
Sbjct: 78 YRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTE 110
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ TE+F+ L +A I EEIR + ++T SAG+++NK
Sbjct: 102 DEAYLDVTENFRGLKLATEIAEEIRGRIRAETHLTASAGVSYNK 145
>gi|404396203|ref|ZP_10987998.1| DNA polymerase IV [Ralstonia sp. 5_2_56FAA]
gi|348614689|gb|EGY64228.1| DNA polymerase IV [Ralstonia sp. 5_2_56FAA]
Length = 340
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 62 YRQVARQIFAIYHSYTPLVEPLSLDEAYLDVTD 94
>gi|300855282|ref|YP_003780266.1| DNA polymerase IV [Clostridium ljungdahlii DSM 13528]
gi|300435397|gb|ADK15164.1| DNA polymerase IV [Clostridium ljungdahlii DSM 13528]
Length = 404
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y+ REV+++LS+++ +E+ SIDEA++D+T
Sbjct: 81 YKQKSREVMSILSQYTPSIEQNSIDEAWLDMT 112
>gi|28210190|ref|NP_781134.1| DNA polymerase IV [Clostridium tetani E88]
gi|28202626|gb|AAO35071.1| putative DNA polymerase IV [Clostridium tetani E88]
Length = 352
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI 45
YR + + + E + IVE SIDEAY+D+T+ E ++ + +I
Sbjct: 79 YREVSKNIFKIFYEITPIVEPVSIDEAYLDITNCGREPLEIVKYI 123
>gi|385302863|gb|EIF46971.1| dna polymerase [Dekkera bruxellensis AWRI1499]
Length = 267
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM 39
YR R+++ + F ++VE+AS+DE+++DL +V + M
Sbjct: 129 YRRESRKMMRIFRSFCDLVEKASVDESFMDLGRLVFKXM 167
>gi|153956047|ref|YP_001396812.1| DinB family protein [Clostridium kluyveri DSM 555]
gi|219856387|ref|YP_002473509.1| hypothetical protein CKR_3044 [Clostridium kluyveri NBRC 12016]
gi|189027659|sp|A5N2U5.1|DPO4_CLOK5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|146348905|gb|EDK35441.1| DinB [Clostridium kluyveri DSM 555]
gi|219570111|dbj|BAH08095.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 400
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 26/32 (81%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y+ +EV+ +LS+++ ++E+ SIDEA++D+T
Sbjct: 81 YKQKSKEVMGILSKYTPVIEKNSIDEAWLDMT 112
>gi|149377092|ref|ZP_01894842.1| DNA polymerase IV [Marinobacter algicola DG893]
gi|149358628|gb|EDM47100.1| DNA polymerase IV [Marinobacter algicola DG893]
Length = 354
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR ++V+A+L E +++VE S+DEA++D+++V +
Sbjct: 80 YRAVSKQVMAILRELTDLVEPLSLDEAFLDVSEVTEHK 117
>gi|22095618|sp|Q8XZ19.2|DPO4_RALSO RecName: Full=DNA polymerase IV; Short=Pol IV
Length = 357
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 79 YRQVARQIFAIYQGYTPLVEPLSLDEAYLDVTD 111
>gi|389690997|ref|ZP_10179890.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Microvirga sp. WSM3557]
gi|388589240|gb|EIM29529.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Microvirga sp. WSM3557]
Length = 422
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y AGREV ++ E + +VE SIDEA++DLT
Sbjct: 114 YSKAGREVRQLMRELTPLVEPVSIDEAFLDLT 145
>gi|299066596|emb|CBJ37786.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum CMR15]
Length = 362
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 84 YRQVARQIFAIYQGYTPLVEPLSLDEAYLDVTD 116
>gi|17546306|ref|NP_519708.1| DNA polymerase IV [Ralstonia solanacearum GMI1000]
gi|17428603|emb|CAD15289.1| probable dna polymerase iv (pol iv) protein [Ralstonia solanacearum
GMI1000]
Length = 362
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 84 YRQVARQIFAIYQGYTPLVEPLSLDEAYLDVTD 116
>gi|336370736|gb|EGN99076.1| hypothetical protein SERLA73DRAFT_168617 [Serpula lacrymans var.
lacrymans S7.3]
Length = 634
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 1 YRNAGREVIAVLSE--FSNIVERASIDEAYIDLTDVVHER-------MKSIGHIAASQLS 51
YR ++I + E +E+ASIDEA+ID T V E+ + + H A + +
Sbjct: 144 YRRESMKIINMFKENLPGGEIEKASIDEAFIDFTRPVREKILERYPYLAEVPHDAPNGID 203
Query: 52 NTF---------VVGFG-PDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAG 101
+ +GF P E A G G+ D D++ + L+IA
Sbjct: 204 SPLPPPPPISWNAIGFLVPVTPSESAGNEGEELLRGE---DDDSTTWHDV----ALSIAA 256
Query: 102 VIVEEIRAAVLSKTQFHCSAGIAHNK 127
++++IR V +K + SAGI+ NK
Sbjct: 257 ELMDQIRKEVHTKLGYTTSAGISRNK 282
>gi|336383501|gb|EGO24650.1| hypothetical protein SERLADRAFT_449409 [Serpula lacrymans var.
lacrymans S7.9]
Length = 636
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 1 YRNAGREVIAVLSE--FSNIVERASIDEAYIDLTDVVHER-------MKSIGHIAASQLS 51
YR ++I + E +E+ASIDEA+ID T V E+ + + H A + +
Sbjct: 144 YRRESMKIINMFKENLPGGEIEKASIDEAFIDFTRPVREKILERYPYLAEVPHDAPNGID 203
Query: 52 NTF---------VVGFG-PDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAG 101
+ +GF P E A G G+ D D++ + L+IA
Sbjct: 204 SPLPPPPPISWNAIGFLVPVTPSESAGNEGEELLRGE---DDDSTTWHDV----ALSIAA 256
Query: 102 VIVEEIRAAVLSKTQFHCSAGIAHNK 127
++++IR V +K + SAGI+ NK
Sbjct: 257 ELMDQIRKEVHTKLGYTTSAGISRNK 282
>gi|340519771|gb|EGR50009.1| predicted protein [Trichoderma reesei QM6a]
Length = 661
Score = 38.5 bits (88), Expect = 0.94, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 1 YRNAGREVIAVLSEFS----NIVERASIDEAYIDLTDVVH-ERMKSIGHIAASQLSNTFV 55
YR R ++A++ + VE+ASIDE ++DL+ VH E ++ ++ + S
Sbjct: 138 YRLQSRRILALIKDCLPKDLQKVEKASIDEVFLDLSAQVHTELLRRFPELSTAPSS---- 193
Query: 56 VGFGPDNNDEDARKAGVMEWLGQ--VYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLS 113
G A ++W V + + ++ D + + IV +RA +
Sbjct: 194 ---GDSAQHLPFPSAAALDWQTDNLVVLEEEQEALDPDWDDVVMLVGSEIVRGVRAQIRE 250
Query: 114 KTQFHCSAGIAHNKV 128
+ + CSAGIA++K+
Sbjct: 251 RLGYTCSAGIANSKL 265
>gi|366164313|ref|ZP_09464068.1| DNA polymerase IV [Acetivibrio cellulolyticus CD2]
Length = 396
Score = 38.5 bits (88), Expect = 0.94, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y REV+++LS +S +V++ SIDEA++D+T
Sbjct: 81 YEKKSREVMSILSRYSPVVQQNSIDEAWLDMT 112
>gi|300691327|ref|YP_003752322.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum PSI07]
gi|299078387|emb|CBJ51037.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum PSI07]
Length = 362
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 84 YRQVARQIFAIYQGYTPLVEPLSLDEAYLDVTD 116
>gi|422325095|ref|ZP_16406132.1| hypothetical protein HMPREF0737_01242 [Rothia mucilaginosa M508]
gi|353343804|gb|EHB88119.1| hypothetical protein HMPREF0737_01242 [Rothia mucilaginosa M508]
Length = 464
Score = 38.5 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR+ R V+A+L++ S VE+ S+DEA++DLT
Sbjct: 91 YRHYSRAVMAILNDLSPYVEQVSVDEAFVDLT 122
>gi|167041529|gb|ABZ06278.1| putative impB/mucB/samB family protein [uncultured marine
microorganism HF4000_008B14]
Length = 380
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 35
YR R V+ V +F+ +VE S+DEAY+D+T+ V
Sbjct: 95 YRQLSRAVMDVFHDFTELVEPLSMDEAYLDITEAV 129
>gi|320528393|ref|ZP_08029555.1| putative DNA polymerase IV [Solobacterium moorei F0204]
gi|320131307|gb|EFW23875.1| putative DNA polymerase IV [Solobacterium moorei F0204]
Length = 396
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMK------SIGHIAASQLSNTF 54
YRN + ++ ++N+VE+AS+DE Y D+T+ + + K S+ ++L T
Sbjct: 79 YRNLSERFMEIVRSYTNLVEQASVDECYADMTEAIKKFEKPLDLAWSLQKQIYNELGLTC 138
Query: 55 VVGFGPD 61
+G P+
Sbjct: 139 SIGVAPN 145
>gi|237807578|ref|YP_002892018.1| DNA-directed DNA polymerase [Tolumonas auensis DSM 9187]
gi|237499839|gb|ACQ92432.1| DNA-directed DNA polymerase [Tolumonas auensis DSM 9187]
Length = 351
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y R+V+ + + +S I+E+ SIDEAY+D++D
Sbjct: 79 YSEVSRQVMRIFARYSQIIEQVSIDEAYLDVSD 111
>gi|308523773|gb|ADO33729.1| putative DNA polymerase IV [Deinococcus ficus]
Length = 358
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR A R + V +EF++++E S+DEAY+D+T
Sbjct: 80 YREASRLIHGVFTEFTDLIEPLSLDEAYLDVT 111
>gi|383776891|ref|YP_005461457.1| putative DNA polymerase IV [Actinoplanes missouriensis 431]
gi|381370123|dbj|BAL86941.1| putative DNA polymerase IV [Actinoplanes missouriensis 431]
Length = 509
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 37
Y+ + V+A+L+E + +VE+ SIDEAY+DLT H+
Sbjct: 82 YKRTSQVVMALLAEVTPLVEQVSIDEAYLDLTAGDHD 118
>gi|336423362|ref|ZP_08603493.1| hypothetical protein HMPREF0993_02870 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336004790|gb|EGN34847.1| hypothetical protein HMPREF0993_02870 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 422
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ R + +L E+S VE+ SIDE Y+D+T +H
Sbjct: 89 YKRCSRAFVNILKEYSPDVEQYSIDEVYMDMTQTIH 124
>gi|161504583|ref|YP_001571695.1| DNA polymerase IV [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|189027678|sp|A9MNS1.1|DPO4_SALAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|160865930|gb|ABX22553.1| hypothetical protein SARI_02697 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 351
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDTPH 114
>gi|409426325|ref|ZP_11260883.1| DNA polymerase IV [Pseudomonas sp. HYS]
Length = 354
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 26/33 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ A RE+ ++ E+++++E S+DEAY+D++D
Sbjct: 81 YKEASREIHSIFREYTDLIEPLSLDEAYLDVSD 113
>gi|261253756|ref|ZP_05946329.1| DNA polymerase IV [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260937147|gb|EEX93136.1| DNA polymerase IV [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 359
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR +++ A+ S +++++E S+DEAY+D+T+ + +
Sbjct: 84 YRQVSQQIRAIFSRYTDLIEPLSLDEAYLDVTNCIQHK 121
>gi|227113587|ref|ZP_03827243.1| DNA polymerase IV [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 352
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y++ R++ + S ++ ++E S+DEAY+D+TD H
Sbjct: 79 YKSTSRQIREIFSRYTPLIEPLSLDEAYLDVTDSPH 114
>gi|119899076|ref|YP_934289.1| DNA polymerase IV [Azoarcus sp. BH72]
gi|119671489|emb|CAL95402.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
Length = 357
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQL 50
YR A R+++A+ +++ +VE S+DEAY+D++ V +R K + A ++
Sbjct: 79 YRAASRQILAIYRDYTALVEPLSLDEAYLDVSGV--DRCKGSATLMAQEI 126
>gi|408356556|ref|YP_006845087.1| DNA polymerase IV [Amphibacillus xylanus NBRC 15112]
gi|407727327|dbj|BAM47325.1| DNA polymerase IV [Amphibacillus xylanus NBRC 15112]
Length = 415
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR+A +E+ +++E + +V+ SIDE Y+D+TD
Sbjct: 88 YRHASQEIFKLMAEITPLVQPVSIDEGYLDITD 120
>gi|392403935|ref|YP_006440547.1| DNA polymerase IV [Turneriella parva DSM 21527]
gi|390611889|gb|AFM13041.1| DNA polymerase IV [Turneriella parva DSM 21527]
Length = 364
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR EV+ +L FS ++ RASIDEA +D TD
Sbjct: 87 YREVSNEVMEILGSFSELLLRASIDEAVLDCTD 119
>gi|110636134|ref|YP_676342.1| DNA polymerase IV [Chelativorans sp. BNC1]
gi|110287118|gb|ABG65177.1| UMUC-like DNA-repair protein [Chelativorans sp. BNC1]
Length = 428
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ G IA++ +F+ +VER SIDEA+ D+T H
Sbjct: 78 YQRLGDAAIAIIGDFTPLVERISIDEAFADVTGCTH 113
>gi|401430179|ref|XP_003886497.1| unnamed protein product, partial [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|356491264|emb|CBZ41028.1| unnamed protein product, partial [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 280
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 YRNAGREVIAVL-SEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR+A R++ A+L +E +V +A IDEAYID+T+ + + AA +
Sbjct: 133 YRHASRQIFAILRAEPGVVVGKAGIDEAYIDVTEAARRELAEVRAAAAGASLDPLADVME 192
Query: 60 PDNNDEDARKAGVMEWLG 77
P + R+A + W G
Sbjct: 193 PSTRLIEDRRAEMEAWFG 210
>gi|302671095|ref|YP_003831055.1| UmuC-like DNA repair protein [Butyrivibrio proteoclasticus B316]
gi|302395568|gb|ADL34473.1| UmuC-like DNA repair protein [Butyrivibrio proteoclasticus B316]
Length = 452
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR R I ++S++S IV++ SIDEAYID++
Sbjct: 98 YREYSRAFIEIISKYSPIVQQVSIDEAYIDMS 129
>gi|40062939|gb|AAR37809.1| DNA polymerase IV [uncultured marine bacterium 443]
Length = 356
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN 52
YR+A R + + E+++++E S+DEAY+D+T+ S H+ A++++
Sbjct: 80 YRDASRAMRTIFEEYTDMIEPLSLDEAYLDVTE------SSGAHVTATRMAK 125
>gi|37904215|gb|AAP68626.1| DinB [Bacillus cereus]
gi|37904217|gb|AAP68627.1| DinB [Bacillus cereus]
gi|37904219|gb|AAP68628.1| DinB [Bacillus thuringiensis serovar canadensis]
gi|37904221|gb|AAP68629.1| DinB [Bacillus thuringiensis serovar israelensis]
gi|37904223|gb|AAP68630.1| DinB [Bacillus weihenstephanensis]
gi|83033536|gb|ABB97221.1| DinB [Bacillus cereus ATCC 14579]
gi|83033538|gb|ABB97222.1| DinB [Bacillus cereus]
gi|83033540|gb|ABB97223.1| DinB [Bacillus thuringiensis]
gi|83033624|gb|ABB97265.1| DinB [Bacillus thuringiensis]
gi|83033628|gb|ABB97267.1| DinB [Bacillus thuringiensis]
gi|83033630|gb|ABB97268.1| DinB [Bacillus thuringiensis]
gi|83033636|gb|ABB97271.1| DinB [Bacillus thuringiensis]
gi|83033640|gb|ABB97273.1| DinB [Bacillus thuringiensis]
gi|83033642|gb|ABB97274.1| DinB [Bacillus thuringiensis]
gi|83033644|gb|ABB97275.1| DinB [Bacillus thuringiensis]
gi|83033646|gb|ABB97276.1| DinB [Bacillus thuringiensis]
gi|83033648|gb|ABB97277.1| DinB [Bacillus thuringiensis]
gi|83033652|gb|ABB97279.1| DinB [Bacillus thuringiensis]
gi|83033668|gb|ABB97287.1| DinB [Bacillus thuringiensis]
gi|83033672|gb|ABB97289.1| DinB [Bacillus thuringiensis]
gi|83033674|gb|ABB97290.1| DinB [Bacillus thuringiensis]
gi|83033676|gb|ABB97291.1| DinB [Bacillus thuringiensis]
Length = 133
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ VLS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|387819084|ref|YP_005679431.1| DNA polymerase IV [Clostridium botulinum H04402 065]
gi|322807128|emb|CBZ04702.1| DNA polymerase IV [Clostridium botulinum H04402 065]
Length = 349
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI---AASQLSNTFVVG 57
Y+ + +L + + I+E SIDEAY+D+T++ E +K HI +++ T VG
Sbjct: 79 YKEVSNNIFKILYKITPIIEPVSIDEAYLDITNIKEEPIKVAEHIKKRVKNEMGLTLSVG 138
>gi|418398635|ref|ZP_12972189.1| DNA polymerase IV [Sinorhizobium meliloti CCNWSX0020]
gi|359507493|gb|EHK80001.1| DNA polymerase IV [Sinorhizobium meliloti CCNWSX0020]
Length = 346
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ TE+ + + +A I EEIRA + ++TQ SAG+++NK
Sbjct: 94 DEAYLDVTENLKGMQLATEIAEEIRARIRAETQLTASAGVSYNK 137
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ +E++ ++E S+DEAY+D+T+
Sbjct: 70 YRAVSRQIQAIFAEYTPLIEPLSLDEAYLDVTE 102
>gi|83033570|gb|ABB97238.1| DinB [Bacillus cereus]
Length = 133
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR+A ++ +LS F++ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YRDASFQMFQILSRFTDKIQPFSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|385652692|ref|ZP_10047245.1| DNA polymerase IV [Leucobacter chromiiresistens JG 31]
Length = 405
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 35
YR+A + V+AV EF+ +VE SIDEA++D+ V
Sbjct: 85 YRSASKAVMAVFQEFTPLVEPLSIDEAFLDVAGTV 119
>gi|374724719|gb|EHR76799.1| DNA Polymerase IV/Kappa [uncultured marine group II euryarchaeote]
Length = 411
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 35
Y A R+V+A+L E + E+A IDEAY+D+T V
Sbjct: 133 YSRASRKVMAILREPAQHFEKAGIDEAYLDITQTV 167
>gi|83033616|gb|ABB97261.1| DinB [Bacillus thuringiensis]
gi|83033638|gb|ABB97272.1| DinB [Bacillus thuringiensis]
gi|83033650|gb|ABB97278.1| DinB [Bacillus thuringiensis]
gi|83033656|gb|ABB97281.1| DinB [Bacillus thuringiensis]
gi|83033658|gb|ABB97282.1| DinB [Bacillus thuringiensis]
gi|83033660|gb|ABB97283.1| DinB [Bacillus thuringiensis]
gi|83033662|gb|ABB97284.1| DinB [Bacillus thuringiensis]
gi|83033664|gb|ABB97285.1| DinB [Bacillus thuringiensis]
gi|83033688|gb|ABB97297.1| DinB [Bacillus thuringiensis]
gi|83033690|gb|ABB97298.1| DinB [Bacillus thuringiensis]
gi|83033692|gb|ABB97299.1| DinB [Bacillus thuringiensis]
gi|83033694|gb|ABB97300.1| DinB [Bacillus thuringiensis]
gi|83033696|gb|ABB97301.1| DinB [Bacillus thuringiensis]
gi|83033698|gb|ABB97302.1| DinB [Bacillus thuringiensis]
gi|83033700|gb|ABB97303.1| DinB [Bacillus thuringiensis]
gi|83033702|gb|ABB97304.1| DinB [Bacillus thuringiensis]
gi|83033704|gb|ABB97305.1| DinB [Bacillus thuringiensis]
Length = 133
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ VLS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|309811847|ref|ZP_07705621.1| putative DNA polymerase IV [Dermacoccus sp. Ellin185]
gi|308434268|gb|EFP58126.1| putative DNA polymerase IV [Dermacoccus sp. Ellin185]
Length = 476
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDL 31
YR + V+AVL E S +VE+ SIDEAY+DL
Sbjct: 82 YRASSLAVMAVLRELSPLVEQVSIDEAYVDL 112
>gi|317154691|ref|YP_004122739.1| DNA-directed DNA polymerase [Desulfovibrio aespoeensis Aspo-2]
gi|316944942|gb|ADU63993.1| DNA-directed DNA polymerase [Desulfovibrio aespoeensis Aspo-2]
Length = 392
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y+ +V+A L EFS VE+AS+DEAY+D T
Sbjct: 79 YKEISNQVMAALHEFSPTVEQASVDEAYLDGT 110
>gi|288962179|ref|YP_003452474.1| DNA polymerase IV [Azospirillum sp. B510]
gi|288914445|dbj|BAI75930.1| DNA polymerase IV [Azospirillum sp. B510]
Length = 399
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM 39
Y+ G + A++ F+ +VE SIDEAY+DLT V ER+
Sbjct: 124 YKEVGHQARAIMEAFTPLVEPISIDEAYLDLTG-VEERL 161
>gi|159528146|ref|YP_001542709.1| DNA-damage inducible protein P [Fluoribacter dumoffii Tex-KL]
gi|159157991|dbj|BAF92680.1| DNA-damage inducible protein P [Fluoribacter dumoffii Tex-KL]
Length = 379
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YRN + + A+ E+++++E S+DEAY+D+TD
Sbjct: 87 YRNESQYIRALFEEYTDLIEPLSLDEAYLDVTD 119
>gi|398928747|ref|ZP_10663655.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM48]
gi|398167999|gb|EJM56031.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM48]
Length = 353
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A RE+ + +++ I+E S+DEAY+D++D +
Sbjct: 81 YREASREIHTIFRDYTEIIEPLSLDEAYLDVSDSAY 116
>gi|37904225|gb|AAP68631.1| DinB [Bacillus thuringiensis serovar kurstaki]
gi|83033542|gb|ABB97224.1| DinB [Bacillus thuringiensis]
gi|83033706|gb|ABB97306.1| DinB [Bacillus thuringiensis]
gi|83033722|gb|ABB97314.1| DinB [Bacillus cereus]
gi|83033734|gb|ABB97320.1| DinB [Bacillus cereus]
gi|83033736|gb|ABB97321.1| DinB [Bacillus cereus]
gi|83033740|gb|ABB97323.1| DinB [Bacillus cereus]
Length = 133
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ VLS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|326803856|ref|YP_004321674.1| putative DNA polymerase IV [Aerococcus urinae ACS-120-V-Col10a]
gi|326650180|gb|AEA00363.1| putative DNA polymerase IV [Aerococcus urinae ACS-120-V-Col10a]
Length = 372
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G EV V E+++I+E SIDEA++D+T+
Sbjct: 98 YRKVGEEVRDVFREYTDIIEPLSIDEAFLDVTN 130
>gi|422651736|ref|ZP_16714528.1| DNA polymerase IV [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330964811|gb|EGH65071.1| DNA polymerase IV [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 353
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ ++ ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHSIFRDYTDLIEPLSLDEAFLDVSDTSH 116
>gi|83033606|gb|ABB97256.1| DinB [Bacillus thuringiensis]
gi|83033608|gb|ABB97257.1| DinB [Bacillus thuringiensis]
gi|83033610|gb|ABB97258.1| DinB [Bacillus thuringiensis]
gi|83033612|gb|ABB97259.1| DinB [Bacillus thuringiensis]
gi|83033614|gb|ABB97260.1| DinB [Bacillus thuringiensis]
gi|83033618|gb|ABB97262.1| DinB [Bacillus thuringiensis]
gi|83033620|gb|ABB97263.1| DinB [Bacillus thuringiensis]
gi|83033626|gb|ABB97266.1| DinB [Bacillus thuringiensis]
gi|83033654|gb|ABB97280.1| DinB [Bacillus thuringiensis]
Length = 133
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ VLS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|328351096|emb|CCA37496.1| DNA polymerase eta subunit [Komagataella pastoris CBS 7435]
Length = 990
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR R+++ + + VE+AS+DE+++DL +VV +++ + + + L +F + P
Sbjct: 133 YRRESRKIMRIFKLRCSKVEKASVDESFLDLGNVVFQKLLELFPVLKNSLDKSF-DDYLP 191
Query: 61 DNNDEDARKAGVMEWLGQVY-----SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 115
+ +E +++ G+V D D ++++ +D L +A + +IR +
Sbjct: 192 EIPEELPEG---LDFKGEVIRCPETDDQDGLVLQDWDDIVML-LASMEAHDIRKQIEKAL 247
Query: 116 QFHCSAGIAHNK 127
+ S GI K
Sbjct: 248 DYTTSCGIGRVK 259
>gi|83033634|gb|ABB97270.1| DinB [Bacillus thuringiensis]
Length = 133
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ VLS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|422586965|ref|ZP_16661636.1| DNA polymerase IV [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330872667|gb|EGH06816.1| DNA polymerase IV [Pseudomonas syringae pv. morsprunorum str.
M302280]
Length = 353
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ ++ ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHSIFRDYTDLIEPLSLDEAFLDVSDTSH 116
>gi|37904237|gb|AAP68637.1| DinB [Bacillus weihenstephanensis]
gi|83033552|gb|ABB97229.1| DinB [Bacillus weihenstephanensis]
gi|83033558|gb|ABB97232.1| DinB [Bacillus cereus]
gi|83033768|gb|ABB97337.1| DinB [Bacillus cereus]
gi|83033780|gb|ABB97343.1| DinB [Bacillus cereus]
gi|83033786|gb|ABB97346.1| DinB [Bacillus cereus]
gi|83033796|gb|ABB97351.1| DinB [Bacillus cereus]
gi|83033798|gb|ABB97352.1| DinB [Bacillus cereus]
Length = 133
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-----VHERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPPEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|383640097|ref|ZP_09952503.1| DNA-directed DNA polymerase [Sphingomonas elodea ATCC 31461]
Length = 361
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ TED + L A +EIRA +L++T SAGI++NK
Sbjct: 107 DEAYLDVTEDRRRLGTAWATAKEIRARILAETGLTASAGISYNK 150
>gi|125774807|ref|XP_001358655.1| GA20473 [Drosophila pseudoobscura pseudoobscura]
gi|54638394|gb|EAL27796.1| GA20473 [Drosophila pseudoobscura pseudoobscura]
Length = 761
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 26/129 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +++ +L ++ +VE+ DE ++D++ +V R H A +Q
Sbjct: 89 YRLMSQKIFDLLLNYTPMVEKLGFDENFMDVSALVDLRQ---AHAAEAQQRPP------- 138
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQELAIAGVIVEEIRAAVLSKTQFHC 119
+G Y D T L + Q LAI I +EIR + + C
Sbjct: 139 ---------------VGHTYPDDGTPLTTCSCGCAQRLAIGTRIAQEIREELKLRLGITC 183
Query: 120 SAGIAHNKV 128
AGIA+NK+
Sbjct: 184 CAGIAYNKL 192
>gi|319651459|ref|ZP_08005587.1| DNA polymerase IV [Bacillus sp. 2_A_57_CT2]
gi|317396774|gb|EFV77484.1| DNA polymerase IV [Bacillus sp. 2_A_57_CT2]
Length = 438
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A + +L E+S +VE SIDE Y+D+TD
Sbjct: 96 YRAASMGMFDILHEYSTLVEPVSIDEGYVDITD 128
>gi|392329945|ref|ZP_10274561.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
gi|391419817|gb|EIQ82628.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
Length = 364
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR+ G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRSVGHQIRRIFRRYTDLVEPMSIDEAYLDVTD 124
>gi|254670271|emb|CBA05549.1| DNA polymerase IV [Neisseria meningitidis alpha153]
Length = 400
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 152 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 195
>gi|323488956|ref|ZP_08094193.1| DNA polymerase IV [Planococcus donghaensis MPA1U2]
gi|323397348|gb|EGA90157.1| DNA polymerase IV [Planococcus donghaensis MPA1U2]
Length = 430
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR A + + +L ++++VE SIDE Y+D+T+++ R
Sbjct: 101 YRAASKAMFEILRTYTDLVEPVSIDEGYVDVTELIETR 138
>gi|257455879|ref|ZP_05621098.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
gi|257446727|gb|EEV21751.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
Length = 351
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR ++ A++ +++ +VE S+DEAY+D+TD +E+
Sbjct: 79 YREVSEQIRAIMHQYTLLVEPLSLDEAYLDVTDSPYEK 116
>gi|429333878|ref|ZP_19214562.1| DNA polymerase IV [Pseudomonas putida CSV86]
gi|428761485|gb|EKX83715.1| DNA polymerase IV [Pseudomonas putida CSV86]
Length = 354
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQL 50
Y+ A RE+ V E+++++E S+DEAY+D++D ER G + A +
Sbjct: 81 YKEASREIHNVFREYTDLIEPLSLDEAYLDVSD--SERCSGSGTLIAQDI 128
>gi|317133415|ref|YP_004092729.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
gi|315471394|gb|ADU27998.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
Length = 399
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 42
Y R V+A+L ++ ++ER SIDEA++DLT + M+ +
Sbjct: 80 YAACSRSVMAILERYTPVLERNSIDEAWLDLTGCLPAGMEPV 121
>gi|261822676|ref|YP_003260782.1| DNA polymerase IV [Pectobacterium wasabiae WPP163]
gi|261606689|gb|ACX89175.1| DNA-directed DNA polymerase [Pectobacterium wasabiae WPP163]
gi|385873125|gb|AFI91645.1| DNA polymerase IV [Pectobacterium sp. SCC3193]
Length = 352
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y++ R++ + S ++ ++E S+DEAY+D+TD H R+ + I A++L+ T
Sbjct: 79 YKSTSRQIREIFSRYTALIEPLSLDEAYLDVTDSPHCNGSATRIAEEIRRTIANELNLTA 138
Query: 55 VVGFGP 60
G P
Sbjct: 139 SAGIAP 144
>gi|195390592|ref|XP_002053952.1| GJ24165 [Drosophila virilis]
gi|194152038|gb|EDW67472.1| GJ24165 [Drosophila virilis]
Length = 749
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 26/129 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +++ +L ++ VE+ DE ++D+T +V R H A +Q
Sbjct: 89 YRLMSQKIFDLLLNYTPDVEKLGFDENFMDVTALVDLRQ---AHAAEAQ----------- 134
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLME-NTEDFQELAIAGVIVEEIRAAVLSKTQFHC 119
RK + G +Y T+L + Q LAI I +EIR + + C
Sbjct: 135 -------RKPPI----GHIYPADGTALTACSCGCAQRLAIGTRIAQEIRDELHLRLGITC 183
Query: 120 SAGIAHNKV 128
AGIA+NK+
Sbjct: 184 CAGIAYNKL 192
>gi|255326217|ref|ZP_05367303.1| DNA polymerase IV [Rothia mucilaginosa ATCC 25296]
gi|255296671|gb|EET76002.1| DNA polymerase IV [Rothia mucilaginosa ATCC 25296]
Length = 464
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR+ R V+A+L + S VE+ S+DEA++DLT
Sbjct: 91 YRHYSRAVMAILHDLSPYVEQVSVDEAFVDLT 122
>gi|104783086|ref|YP_609584.1| DNA polymerase IV [Pseudomonas entomophila L48]
gi|122402270|sp|Q1I6D5.1|DPO4_PSEE4 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|95112073|emb|CAK16800.1| DNA polymerase IV, damage-inducible protein P [Pseudomonas
entomophila L48]
Length = 354
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A R++ + ++++++E S+DEAY+D+TD
Sbjct: 81 YREASRDIHTIFRDYTDLIEPLSLDEAYLDVTD 113
>gi|88858237|ref|ZP_01132879.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Pseudoalteromonas tunicata D2]
gi|88819854|gb|EAR29667.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Pseudoalteromonas tunicata D2]
Length = 341
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
Y+N +++ A+ ++++VE S+DEAY+D+TD
Sbjct: 70 YKNISKQIRAIFYRYTDLVEPLSLDEAYLDVTDC 103
>gi|117928651|ref|YP_873202.1| DNA polymerase IV [Acidothermus cellulolyticus 11B]
gi|117649114|gb|ABK53216.1| DNA-directed DNA polymerase [Acidothermus cellulolyticus 11B]
Length = 466
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKS 41
YR +++ + +EFS +VE S+DEAY+D+ HE + +
Sbjct: 102 YRAVSAQIMDIFAEFSALVEPLSLDEAYLDIATSAHEPIST 142
>gi|417643636|ref|ZP_12293673.1| DNA polymerase IV [Staphylococcus warneri VCU121]
gi|445059261|ref|YP_007384665.1| DNA polymerase IV [Staphylococcus warneri SG1]
gi|330685556|gb|EGG97202.1| DNA polymerase IV [Staphylococcus epidermidis VCU121]
gi|443425318|gb|AGC90221.1| DNA polymerase IV [Staphylococcus warneri SG1]
Length = 356
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN 52
YR A ++++ + ++ IVE S+DEAY+D+T +V + AS+++N
Sbjct: 81 YREASKKIMDIFRSYTEIVEPLSLDEAYLDITHLVRP------DLPASKIAN 126
>gi|296101429|ref|YP_003611575.1| DNA polymerase IV [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295055888|gb|ADF60626.1| DNA polymerase IV [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 352
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D+TD VH
Sbjct: 79 YKEASLHIREIFSRYTSLIEPLSLDEAYLDVTDSVH 114
>gi|149181624|ref|ZP_01860117.1| DNA polymerase IV [Bacillus sp. SG-1]
gi|148850602|gb|EDL64759.1| DNA polymerase IV [Bacillus sp. SG-1]
Length = 417
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A + + +L ++S +VE SIDE Y+D+TD
Sbjct: 88 YRAASQGMFEILRQYSQLVEPVSIDEGYVDITD 120
>gi|255717821|ref|XP_002555191.1| KLTH0G03586p [Lachancea thermotolerans]
gi|238936575|emb|CAR24754.1| KLTH0G03586p [Lachancea thermotolerans CBS 6340]
Length = 621
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDL 31
YR R+++ + SE+ ++VE+AS+DE ++DL
Sbjct: 131 YRRESRKILKIFSEWCDLVEKASVDEVFLDL 161
>gi|83033754|gb|ABB97330.1| DinB [Bacillus cereus]
Length = 133
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|401675714|ref|ZP_10807702.1| DNA polymerase IV [Enterobacter sp. SST3]
gi|400217016|gb|EJO47914.1| DNA polymerase IV [Enterobacter sp. SST3]
Length = 352
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D+TD VH
Sbjct: 79 YKEASLHIREIFSRYTSLIEPLSLDEAYLDVTDSVH 114
>gi|83033576|gb|ABB97241.1| DinB [Bacillus cereus]
Length = 133
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALVTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|315048855|ref|XP_003173802.1| DNA polymerase eta [Arthroderma gypseum CBS 118893]
gi|311341769|gb|EFR00972.1| DNA polymerase eta [Arthroderma gypseum CBS 118893]
Length = 646
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 12 LSEFSNIV--ERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARK 69
SE S++V E+A IDE ++DL+ +V + + +L+ TF N +
Sbjct: 167 FSEPSDMVRLEKAGIDEVFVDLSALVFGTL--LQRYEVLRLAGTFEGSKDSPNRLLPRPE 224
Query: 70 AGVMEWLGQVYSDTDTSLMENTEDFQE-----LAIAGVIVEEIRAAVLSKTQFHCSAGIA 124
+ W G+ D E+ ED E + + IV+ +R AV + ++ CS GIA
Sbjct: 225 TTALLW-GEDDELIDLDTGESEEDDPEWDDVVIQVGAEIVKFVRTAVWDQLKYTCSGGIA 283
Query: 125 HNKV 128
NK+
Sbjct: 284 RNKM 287
>gi|83033566|gb|ABB97236.1| DinB [Bacillus cereus]
gi|83033744|gb|ABB97325.1| DinB [Bacillus cereus]
Length = 133
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|392977763|ref|YP_006476351.1| DNA polymerase IV [Enterobacter cloacae subsp. dissolvens SDM]
gi|392323696|gb|AFM58649.1| DNA polymerase IV [Enterobacter cloacae subsp. dissolvens SDM]
Length = 352
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D+TD VH
Sbjct: 79 YKEASLHIREIFSRYTSLIEPLSLDEAYLDVTDSVH 114
>gi|168179226|ref|ZP_02613890.1| DNA polymerase IV [Clostridium botulinum NCTC 2916]
gi|182669759|gb|EDT81735.1| DNA polymerase IV [Clostridium botulinum NCTC 2916]
Length = 349
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI---AASQLSNTFVVG 57
Y+ + +L + + I+E SIDEAY+D+T++ E +K HI +++ T VG
Sbjct: 79 YKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEEPIKVAEHIKKRVKNEMGLTLSVG 138
>gi|170759086|ref|YP_001788136.1| DNA polymerase IV [Clostridium botulinum A3 str. Loch Maree]
gi|169406075|gb|ACA54486.1| DNA polymerase IV [Clostridium botulinum A3 str. Loch Maree]
Length = 349
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI 45
Y+ + +L + + I+E SIDEAY+D+T++ E +K HI
Sbjct: 79 YKEVSNSIFKILYKITPIIEPVSIDEAYLDITNIKEESIKVAEHI 123
>gi|148380777|ref|YP_001255318.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 3502]
gi|153932271|ref|YP_001385062.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 19397]
gi|153934711|ref|YP_001388531.1| DNA polymerase IV [Clostridium botulinum A str. Hall]
gi|148290261|emb|CAL84381.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 3502]
gi|152928315|gb|ABS33815.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 19397]
gi|152930625|gb|ABS36124.1| DNA polymerase IV [Clostridium botulinum A str. Hall]
Length = 349
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI---AASQLSNTFVVG 57
Y+ + +L + + I+E SIDEAY+D+T++ E +K HI +++ T VG
Sbjct: 79 YKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEEPIKVAEHIKKRVKNEMGLTLSVG 138
>gi|83033556|gb|ABB97231.1| DinB [Bacillus cereus]
Length = 133
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|365842978|ref|ZP_09383943.1| putative DNA polymerase IV [Flavonifractor plautii ATCC 29863]
gi|364573964|gb|EHM51439.1| putative DNA polymerase IV [Flavonifractor plautii ATCC 29863]
Length = 412
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-------ERMKSIGHIAASQLSNT 53
YR+ R V AV ++++VE SIDE+++D+T +H I + +L T
Sbjct: 81 YRDYSRRVNAVYERYTDLVEPFSIDESWLDITGSLHLFGGDAKALADEIRRVLREELGLT 140
Query: 54 FVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQEL 97
VG A + +G Y D + + + E++QEL
Sbjct: 141 VSVG---------ASFNKIFAKMGSDYKKPDATTVISRENYQEL 175
>gi|226950227|ref|YP_002805318.1| DNA polymerase IV [Clostridium botulinum A2 str. Kyoto]
gi|226843691|gb|ACO86357.1| DNA polymerase IV [Clostridium botulinum A2 str. Kyoto]
Length = 349
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI---AASQLSNTFVVG 57
Y+ + +L + + I+E SIDEAY+D+T++ E +K HI +++ T VG
Sbjct: 79 YKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEEPIKVAEHIKKRVKNEMGLTLSVG 138
>gi|170755759|ref|YP_001782423.1| DNA polymerase IV [Clostridium botulinum B1 str. Okra]
gi|429244890|ref|ZP_19208309.1| DNA polymerase IV [Clostridium botulinum CFSAN001628]
gi|169120971|gb|ACA44807.1| DNA polymerase IV [Clostridium botulinum B1 str. Okra]
gi|428758080|gb|EKX80533.1| DNA polymerase IV [Clostridium botulinum CFSAN001628]
Length = 349
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI---AASQLSNTFVVG 57
Y+ + +L + + I+E SIDEAY+D+T++ E +K HI +++ T VG
Sbjct: 79 YKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEEPIKVAEHIKKKVKNEMGLTLSVG 138
>gi|153939133|ref|YP_001392095.1| DNA polymerase IV [Clostridium botulinum F str. Langeland]
gi|384463083|ref|YP_005675678.1| DNA polymerase IV [Clostridium botulinum F str. 230613]
gi|152935029|gb|ABS40527.1| DNA polymerase IV [Clostridium botulinum F str. Langeland]
gi|295320100|gb|ADG00478.1| DNA polymerase IV [Clostridium botulinum F str. 230613]
Length = 349
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI---AASQLSNTFVVG 57
Y+ + +L + + I+E SIDEAY+D+T++ E +K HI +++ T VG
Sbjct: 79 YKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEEPIKVAEHIKKKVKNEMGLTLSVG 138
>gi|83033534|gb|ABB97220.1| DinB [Bacillus cereus ATCC 10987]
Length = 133
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|421836285|ref|ZP_16270813.1| DNA polymerase IV, partial [Clostridium botulinum CFSAN001627]
gi|409741873|gb|EKN41498.1| DNA polymerase IV, partial [Clostridium botulinum CFSAN001627]
Length = 337
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI---AASQLSNTFVVG 57
Y+ + +L + + I+E SIDEAY+D+T++ E +K HI +++ T VG
Sbjct: 79 YKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEEPIKVAEHIKKRVKNEMGLTLSVG 138
>gi|168184461|ref|ZP_02619125.1| DNA polymerase IV [Clostridium botulinum Bf]
gi|237796253|ref|YP_002863805.1| DNA polymerase IV [Clostridium botulinum Ba4 str. 657]
gi|182672433|gb|EDT84394.1| DNA polymerase IV [Clostridium botulinum Bf]
gi|229262753|gb|ACQ53786.1| DNA polymerase IV [Clostridium botulinum Ba4 str. 657]
Length = 349
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI---AASQLSNTFVVG 57
Y+ + +L + + I+E SIDEAY+D+T++ E +K HI +++ T VG
Sbjct: 79 YKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEEPIKVAEHIKKRVKNEMGLTLSVG 138
>gi|403668164|ref|ZP_10933441.1| DNA polymerase IV [Kurthia sp. JC8E]
Length = 408
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +++ +L ++ +VE SIDE Y+D++D+V+
Sbjct: 80 YREASKKMFDILRSYTPLVEPVSIDEGYMDVSDLVN 115
>gi|333983687|ref|YP_004512897.1| DNA-directed DNA polymerase [Methylomonas methanica MC09]
gi|333807728|gb|AEG00398.1| DNA-directed DNA polymerase [Methylomonas methanica MC09]
Length = 433
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM------KSIGHIAASQLSNTF 54
Y + +++VL F+ VE SIDEA++D TDV R K I Q+
Sbjct: 87 YADLSARMMSVLETFTPTVEVYSIDEAFLDFTDVYACRQDPIAYAKQIKETVQRQVGIPV 146
Query: 55 VVGFGP 60
VG GP
Sbjct: 147 CVGLGP 152
>gi|83033622|gb|ABB97264.1| DinB [Bacillus thuringiensis]
gi|83033670|gb|ABB97288.1| DinB [Bacillus thuringiensis]
gi|83033782|gb|ABB97344.1| DinB [Bacillus cereus]
Length = 133
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|195453784|ref|XP_002073941.1| GK14382 [Drosophila willistoni]
gi|194170026|gb|EDW84927.1| GK14382 [Drosophila willistoni]
Length = 735
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 26/129 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +++ +L ++ VE+ DE ++D++ +V R
Sbjct: 89 YRLMSQKIFDLLLNYTPAVEKLGFDENFMDVSALVELR---------------------- 126
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTED-FQELAIAGVIVEEIRAAVLSKTQFHC 119
E A +A +G +Y D T L + Q LAI I +EIR + + C
Sbjct: 127 ---QEHAAEAQEKPPVGHLYPDDGTLLTDCLCGCAQRLAIGSRIAQEIREELKLRLGITC 183
Query: 120 SAGIAHNKV 128
AGIA+NK+
Sbjct: 184 CAGIAYNKL 192
>gi|407473475|ref|YP_006787875.1| DNA polymerase IV [Clostridium acidurici 9a]
gi|407049983|gb|AFS78028.1| DNA polymerase IV [Clostridium acidurici 9a]
Length = 339
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNT 53
Y+ R+V +L E ++++E SIDEAY+D++++ ++ + I L T
Sbjct: 70 YKEVSRQVFGILYEIADLIEPVSIDEAYLDVSNIEKNPLEIVEEIKYKVLKET 122
>gi|395454626|dbj|BAM30965.1| DNA polymerase IV [Streptococcus pyogenes M1 476]
Length = 183
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 73 YRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD 105
>gi|204926676|ref|ZP_03217878.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|452121423|ref|YP_007471671.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
gi|204323341|gb|EDZ08536.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|451910427|gb|AGF82233.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
Length = 351
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRRVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|333375949|ref|ZP_08467746.1| DNA-directed DNA polymerase IV [Kingella kingae ATCC 23330]
gi|332969247|gb|EGK08275.1| DNA-directed DNA polymerase IV [Kingella kingae ATCC 23330]
Length = 363
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 78 QVYSDT------DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
Q Y+D D + ++ T++ Q+L A + ++IRA +L++T SAGIA NK
Sbjct: 107 QCYTDLIEPISLDEAYLDVTQNKQQLPYASQVAKQIRAEILAQTGLTASAGIAPNK 162
>gi|410681235|ref|YP_006933637.1| impB/mucB/samB family protein [Streptococcus pyogenes A20]
gi|409693824|gb|AFV38684.1| impB/mucB/samB family protein [Streptococcus pyogenes A20]
Length = 323
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD 124
>gi|395795721|ref|ZP_10475024.1| DNA polymerase IV [Pseudomonas sp. Ag1]
gi|421138299|ref|ZP_15598364.1| DNA polymerase IV [Pseudomonas fluorescens BBc6R8]
gi|395340181|gb|EJF72019.1| DNA polymerase IV [Pseudomonas sp. Ag1]
gi|404510467|gb|EKA24372.1| DNA polymerase IV [Pseudomonas fluorescens BBc6R8]
Length = 352
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A +E+ + ++++++E S+DEAY+D++D H R+ + I ++QL T
Sbjct: 81 YKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATRIAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDN 62
G P+
Sbjct: 141 SAGVAPNK 148
>gi|21911131|ref|NP_665399.1| DNA polymerase IV [Streptococcus pyogenes MGAS315]
gi|28895184|ref|NP_801534.1| DNA polymerase IV [Streptococcus pyogenes SSI-1]
gi|341958651|sp|P0DA78.1|DPO4_STRP3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|341958652|sp|P0DA79.1|DPO4_STRPQ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21905342|gb|AAM80202.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS315]
gi|28810429|dbj|BAC63367.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
SSI-1]
Length = 365
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD 124
>gi|330922001|ref|XP_003299653.1| hypothetical protein PTT_10695 [Pyrenophora teres f. teres 0-1]
gi|311326576|gb|EFQ92250.1| hypothetical protein PTT_10695 [Pyrenophora teres f. teres 0-1]
Length = 596
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 26/141 (18%)
Query: 1 YRNAGREVIAVLSEFS--NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTF---- 54
+R+A + + A L FS + ER DE ++D+TD++ ++ + + +N F
Sbjct: 91 FRDASKHLYAFLRSFSWNSRCERLGFDEVFLDVTDIID---YNVSILNQNDPTNAFFCLV 147
Query: 55 ----VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT---EDFQELAIAGVIVEEI 107
VGF P N +G +Y T T ++E LA+ + I
Sbjct: 148 KHDPTVGF-PYN---------AARLMGHLYPRTATEILETASLDPLHLRLALGSHLAHYI 197
Query: 108 RAAVLSKTQFHCSAGIAHNKV 128
R+ + S+ + +AG++ NK+
Sbjct: 198 RSQLESEKGYTATAGVSTNKL 218
>gi|440741452|ref|ZP_20920866.1| DNA polymerase IV [Pseudomonas fluorescens BRIP34879]
gi|440371530|gb|ELQ08370.1| DNA polymerase IV [Pseudomonas fluorescens BRIP34879]
Length = 352
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A +E+ + ++++++E S+DEAY+D++D H R+ + I ++QL T
Sbjct: 81 YKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATRIAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDN 62
G P+
Sbjct: 141 SAGVAPNK 148
>gi|15675671|ref|NP_269845.1| DNA polymerase IV [Streptococcus pyogenes SF370]
gi|22095631|sp|Q99Y66.1|DPO4_STRP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13622885|gb|AAK34566.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes M1
GAS]
Length = 364
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD 124
>gi|395496823|ref|ZP_10428402.1| DNA polymerase IV [Pseudomonas sp. PAMC 25886]
Length = 352
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A +E+ + ++++++E S+DEAY+D++D H R+ + I ++QL T
Sbjct: 81 YKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATRIAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDN 62
G P+
Sbjct: 141 SAGVAPNK 148
>gi|222151871|ref|YP_002561031.1| DNA polymerase IV [Macrococcus caseolyticus JCSC5402]
gi|222121000|dbj|BAH18335.1| DNA-damage-inducible protein P homolog [Macrococcus caseolyticus
JCSC5402]
Length = 354
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAAS 48
YR+ ++++ V +++IV+ S+DEAY+D+T +V + + IAAS
Sbjct: 79 YRSVSQQIMNVFKSYTDIVQPLSLDEAYLDITHLVRPDLGA-SQIAAS 125
>gi|37904229|gb|AAP68633.1| DinB [Bacillus weihenstephanensis]
gi|83033554|gb|ABB97230.1| DinB [Bacillus cereus]
gi|83033718|gb|ABB97312.1| DinB [Bacillus cereus]
gi|83033720|gb|ABB97313.1| DinB [Bacillus cereus]
gi|83033726|gb|ABB97316.1| DinB [Bacillus cereus]
gi|83033728|gb|ABB97317.1| DinB [Bacillus cereus]
gi|83033732|gb|ABB97319.1| DinB [Bacillus cereus]
gi|83033742|gb|ABB97324.1| DinB [Bacillus cereus]
gi|83033770|gb|ABB97338.1| DinB [Bacillus cereus]
gi|83033772|gb|ABB97339.1| DinB [Bacillus cereus]
gi|83033774|gb|ABB97340.1| DinB [Bacillus cereus]
gi|83033776|gb|ABB97341.1| DinB [Bacillus cereus]
gi|83033778|gb|ABB97342.1| DinB [Bacillus cereus]
gi|83033788|gb|ABB97347.1| DinB [Bacillus cereus]
Length = 133
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|83033712|gb|ABB97309.1| DinB [Bacillus thuringiensis]
Length = 133
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ VLS F ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQVLSRFPEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|71911381|ref|YP_282931.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
gi|71854163|gb|AAZ52186.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
Length = 364
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD 124
>gi|326800818|ref|YP_004318637.1| DNA polymerase IV [Sphingobacterium sp. 21]
gi|326551582|gb|ADZ79967.1| DNA polymerase IV [Sphingobacterium sp. 21]
Length = 385
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y A +E+ A+L+E + E+ASIDE YIDLT
Sbjct: 81 YTKASQEITAILAEKVPLFEKASIDEHYIDLT 112
>gi|447918156|ref|YP_007398724.1| DNA polymerase IV [Pseudomonas poae RE*1-1-14]
gi|445202019|gb|AGE27228.1| DNA polymerase IV [Pseudomonas poae RE*1-1-14]
Length = 352
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A +E+ + ++++++E S+DEAY+D++D H R+ + I ++QL T
Sbjct: 81 YKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATRIAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDN 62
G P+
Sbjct: 141 SAGVAPNK 148
>gi|395649955|ref|ZP_10437805.1| DNA polymerase IV [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 352
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A +E+ + ++++++E S+DEAY+D++D H R+ + I ++QL T
Sbjct: 81 YKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATRIAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDN 62
G P+
Sbjct: 141 SAGVAPNK 148
>gi|229592383|ref|YP_002874502.1| DNA polymerase IV [Pseudomonas fluorescens SBW25]
gi|229364249|emb|CAY51955.1| putative DNA polymerase IV [Pseudomonas fluorescens SBW25]
Length = 352
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A +E+ + ++++++E S+DEAY+D++D H R+ + I ++QL T
Sbjct: 81 YKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATRIAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDN 62
G P+
Sbjct: 141 SAGVAPNK 148
>gi|150377463|ref|YP_001314058.1| DNA polymerase IV [Sinorhizobium medicae WSM419]
gi|150032010|gb|ABR64125.1| DNA-directed DNA polymerase [Sinorhizobium medicae WSM419]
Length = 378
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ +E++ ++E S+DEAY+D+T+
Sbjct: 102 YRAVSRQIHAIFAEYTPLIEPLSLDEAYLDVTE 134
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ TE+ + + +A I EEIRA + ++T SAG+++NK
Sbjct: 126 DEAYLDVTENLKGMELATEIAEEIRARIRAETGLTASAGVSYNK 169
>gi|189044612|sp|Q1JF59.1|DPO4_STRPD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94544652|gb|ABF34700.1| DNA polymerase IV [Streptococcus pyogenes MGAS10270]
Length = 364
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD 124
>gi|388467403|ref|ZP_10141613.1| DNA polymerase IV [Pseudomonas synxantha BG33R]
gi|388010983|gb|EIK72170.1| DNA polymerase IV [Pseudomonas synxantha BG33R]
Length = 352
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A +E+ + ++++++E S+DEAY+D++D H R+ + I ++QL T
Sbjct: 81 YKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATRIAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDN 62
G P+
Sbjct: 141 SAGVAPNK 148
>gi|407794169|ref|ZP_11141198.1| hypothetical protein A10D4_08507 [Idiomarina xiamenensis 10-D-4]
gi|407213593|gb|EKE83449.1| hypothetical protein A10D4_08507 [Idiomarina xiamenensis 10-D-4]
Length = 356
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 13/70 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD-------------VVHERMKSIGHIAA 47
Y++ +V +L + ++ +E ASIDE Y+DLTD + E++++IG +
Sbjct: 82 YKSLSEQVYGILQQVTDRIEPASIDEFYLDLTDNTLFRGSASLTMAAIREQIRAIGVPGS 141
Query: 48 SQLSNTFVVG 57
+ +SN +V
Sbjct: 142 AGISNQKMVA 151
>gi|423101419|ref|ZP_17089121.1| DNA polymerase IV [Klebsiella oxytoca 10-5242]
gi|376391207|gb|EHT03886.1| DNA polymerase IV [Klebsiella oxytoca 10-5242]
Length = 351
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAYID++D VH
Sbjct: 79 YKEASNHIREIFSRYTSLIEPLSLDEAYIDVSDSVH 114
>gi|83033598|gb|ABB97252.1| DinB [Bacillus cereus]
gi|83033724|gb|ABB97315.1| DinB [Bacillus cereus]
Length = 133
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|383480538|ref|YP_005389432.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|383494519|ref|YP_005412195.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
gi|378928528|gb|AFC66734.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|378930246|gb|AFC68663.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
Length = 364
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD 124
>gi|398405964|ref|XP_003854448.1| hypothetical protein MYCGRDRAFT_11773, partial [Zymoseptoria
tritici IPO323]
gi|339474331|gb|EGP89424.1| hypothetical protein MYCGRDRAFT_11773 [Zymoseptoria tritici IPO323]
Length = 479
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 16/134 (11%)
Query: 1 YRNAGREVIAVLSEF-----SNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFV 55
YR R+ A++ + ++E+ASIDE Y+DL+ VH+ + + +
Sbjct: 134 YRIESRKAFALIESCLPVTSTVLLEKASIDEMYLDLSTYVHD-------VLLDRYPELLI 186
Query: 56 VGFGPDNNDEDARKAGVMEWL-GQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSK 114
+ A ++W + D SL D + I ++ E+R V SK
Sbjct: 187 SSRDTEGQYLPLPPATSLDWQEDNILGDQAQSL---DWDAVAMNIGAGVIRELRHTVHSK 243
Query: 115 TQFHCSAGIAHNKV 128
+ SAGIA NK+
Sbjct: 244 LHYTASAGIASNKM 257
>gi|416187210|ref|ZP_11614132.1| DNA polymerase IV, partial [Neisseria meningitidis M0579]
gi|325136557|gb|EGC59160.1| DNA polymerase IV [Neisseria meningitidis M0579]
Length = 264
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 16 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 59
>gi|339300877|ref|ZP_08650004.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
gi|319745668|gb|EFV97967.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
Length = 369
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G EV + +++++VE SIDEAY+D+T+
Sbjct: 97 YRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVTE 129
>gi|158338583|ref|YP_001519760.1| DNA polymerase IV [Acaryochloris marina MBIC11017]
gi|158308824|gb|ABW30441.1| DNA polymerase IV [Acaryochloris marina MBIC11017]
Length = 355
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR +++ A+ +F+++VE S+DEAY+D+T+
Sbjct: 79 YRQVSQQIRAIFHQFTDLVEPVSLDEAYLDVTE 111
>gi|83033578|gb|ABB97242.1| DinB [Bacillus cereus]
Length = 133
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 6 YREASFQMFQILSRFTEQIQPVSIDEGYLDITDCYALGSPLEIAKMIQQALLTELQLPCS 65
Query: 56 VGFGPD 61
+G P+
Sbjct: 66 IGIAPN 71
>gi|410595093|ref|YP_006951820.1| DNA polymerase IV [Streptococcus agalactiae SA20-06]
gi|410518732|gb|AFV72876.1| DNA polymerase IV [Streptococcus agalactiae SA20-06]
Length = 364
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G EV + +++++VE SIDEAY+D+T+
Sbjct: 92 YRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVTE 124
>gi|402772897|ref|YP_006592434.1| DNA polymerase IV (Pol IV) [Methylocystis sp. SC2]
gi|401774917|emb|CCJ07783.1| DNA polymerase IV (Pol IV) [Methylocystis sp. SC2]
Length = 457
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 26/33 (78%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y++ R++ ++ +E++ IVE S+DEAY+D+T+
Sbjct: 181 YKDVSRQIRSIFAEYTPIVEPLSLDEAYLDVTE 213
>gi|417363626|ref|ZP_12136788.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417404428|ref|ZP_12157699.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353599778|gb|EHC55865.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353628510|gb|EHC76549.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
Length = 356
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 84 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 119
>gi|417355889|ref|ZP_12131585.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
gi|417378884|ref|ZP_12147411.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417472629|ref|ZP_12168274.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|417525134|ref|ZP_12184389.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|353597694|gb|EHC54333.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
gi|353619144|gb|EHC69627.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353653545|gb|EHC95057.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353670162|gb|EHD06852.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
Length = 356
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 84 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 119
>gi|415985338|ref|ZP_11559565.1| umuC protein, partial [Acidithiobacillus sp. GGI-221]
gi|339834725|gb|EGQ62466.1| umuC protein [Acidithiobacillus sp. GGI-221]
Length = 188
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIA 46
Y + ++ +LS FS I E SIDE ++DL+ +R+ +G A
Sbjct: 78 YADMSNRMMGILSTFSPIQEVYSIDECFLDLSGFAQDRLSQLGQAA 123
>gi|152997785|ref|YP_001342620.1| DNA-directed DNA polymerase [Marinomonas sp. MWYL1]
gi|189027670|sp|A6W1V6.1|DPO4_MARMS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|150838709|gb|ABR72685.1| DNA-directed DNA polymerase [Marinomonas sp. MWYL1]
Length = 352
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ A+ EF++I+E S+DEAY+D+T+
Sbjct: 81 YRLASEQMHAIFREFTDIIEPLSLDEAYLDVTN 113
>gi|22537865|ref|NP_688716.1| DNA polymerase IV [Streptococcus agalactiae 2603V/R]
gi|25011810|ref|NP_736205.1| DNA polymerase IV [Streptococcus agalactiae NEM316]
gi|76787674|ref|YP_330334.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76798415|ref|ZP_00780656.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77405963|ref|ZP_00783042.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|77413674|ref|ZP_00789858.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|406710106|ref|YP_006764832.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
gi|417006108|ref|ZP_11944678.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|424048829|ref|ZP_17786380.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|81588478|sp|Q8DXW9.1|DPO4_STRA5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81588721|sp|Q8E3I8.1|DPO4_STRA3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123601318|sp|Q3JZG9.1|DPO4_STRA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|22534761|gb|AAN00589.1|AE014270_7 DNA-damage-inducible protein P [Streptococcus agalactiae 2603V/R]
gi|24413351|emb|CAD47430.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562731|gb|ABA45315.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76586247|gb|EAO62764.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77160274|gb|EAO71401.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|77175415|gb|EAO78205.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|341576289|gb|EGS26700.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|389649850|gb|EIM71325.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|406650991|gb|AFS46392.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
Length = 364
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G EV + +++++VE SIDEAY+D+T+
Sbjct: 92 YRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVTE 124
>gi|417346516|ref|ZP_12126349.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417371123|ref|ZP_12141791.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|353579501|gb|EHC41021.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353608986|gb|EHC62416.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
Length = 356
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 84 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 119
>gi|418825347|ref|ZP_13380648.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
gi|392815769|gb|EJA71702.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
Length = 339
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 67 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 102
>gi|417339507|ref|ZP_12121054.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|357960280|gb|EHJ84177.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
Length = 356
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 84 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 119
>gi|77412153|ref|ZP_00788476.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
gi|77161813|gb|EAO72801.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
Length = 364
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G EV + +++++VE SIDEAY+D+T+
Sbjct: 92 YRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVTE 124
>gi|77408795|ref|ZP_00785524.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|421147957|ref|ZP_15607629.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
gi|77172576|gb|EAO75716.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|401685295|gb|EJS81303.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
Length = 364
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G EV + +++++VE SIDEAY+D+T+
Sbjct: 92 YRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVTE 124
>gi|423096990|ref|ZP_17084786.1| DNA polymerase IV [Pseudomonas fluorescens Q2-87]
gi|397888368|gb|EJL04851.1| DNA polymerase IV [Pseudomonas fluorescens Q2-87]
Length = 353
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH------ERMKSIGHIAASQLSNTF 54
YR A +E+ + S++++++E S+DEAY+D++ H + I ++QL T
Sbjct: 81 YREASKEIHTIFSDYTDLIEPLSLDEAYLDVSASAHFGGSATRVAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDN 62
G P+
Sbjct: 141 SAGVAPNK 148
>gi|417450345|ref|ZP_12162896.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|353637039|gb|EHC82955.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
Length = 343
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 71 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 106
>gi|388856805|emb|CCF49592.1| related to DNA polymerase kappa [Ustilago hordei]
Length = 680
Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAA---SQLSN----T 53
Y A +V+AV ++ + +AS+DEAY+D+T+ V + +I + Q+ N T
Sbjct: 224 YLQASHKVMAVFEQYDENLAKASLDEAYLDITEYVEQHRGTIDQVVQHLRDQVRNETQLT 283
Query: 54 FVVGFGPD 61
VG P+
Sbjct: 284 VSVGIAPN 291
>gi|373120315|ref|ZP_09534380.1| hypothetical protein HMPREF0995_05216 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371658423|gb|EHO23703.1| hypothetical protein HMPREF0995_05216 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 412
Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-------ERMKSIGHIAASQLSNT 53
YR+ R V AV ++++VE SIDE+++D+T +H I + +L T
Sbjct: 81 YRDYSRRVNAVYERYTDLVEPFSIDESWLDITGSLHLFGGDAKALADEIRRVLREELGLT 140
Query: 54 FVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQEL 97
VG + + +G Y D + + + E++QEL
Sbjct: 141 VSVGVSFNK---------IFAKMGSDYKKPDATTVISRENYQEL 175
>gi|417516172|ref|ZP_12179116.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353654837|gb|EHC96017.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
Length = 343
Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 71 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 106
>gi|56414559|ref|YP_151634.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197363489|ref|YP_002143126.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|81599398|sp|Q5PF76.1|DPO4_SALPA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|56128816|gb|AAV78322.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|197094966|emb|CAR60503.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
Length = 351
Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|339017671|ref|ZP_08643821.1| DNA polymerase IV [Acetobacter tropicalis NBRC 101654]
gi|338753217|dbj|GAA07125.1| DNA polymerase IV [Acetobacter tropicalis NBRC 101654]
Length = 367
Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T+ A +I +EIRAA+L++T SAGI++NK
Sbjct: 106 DEAYLDVTQPLLPRPYATIIAQEIRAAILAETGLTASAGISYNK 149
>gi|28871135|ref|NP_793754.1| DNA polymerase IV [Pseudomonas syringae pv. tomato str. DC3000]
gi|38257466|sp|Q87Y22.1|DPO4_PSESM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|28854385|gb|AAO57449.1| DNA polymerase IV [Pseudomonas syringae pv. tomato str. DC3000]
Length = 353
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ ++ ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHSIFRDYTDLIEPLSLDEAFLDVSDTHH 116
>gi|381401525|ref|ZP_09926424.1| DNA polymerase IV [Kingella kingae PYKK081]
gi|380833500|gb|EIC13369.1| DNA polymerase IV [Kingella kingae PYKK081]
Length = 338
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 58 FGPDNNDEDARKAGVMEWLGQVYSDT------DTSLMENTEDFQELAIAGVIVEEIRAAV 111
F P + D + + + + Q Y+D D + ++ T++ Q+L A + ++IRA +
Sbjct: 62 FVPPHFDLYRQMSQQIHMIFQRYTDLIEPISLDEAYLDVTQNKQQLPYASQVAKQIRAEI 121
Query: 112 LSKTQFHCSAGIAHNK 127
L++T SAGIA NK
Sbjct: 122 LAQTGLTASAGIAPNK 137
>gi|254567201|ref|XP_002490711.1| hypothetical protein [Komagataella pastoris GS115]
gi|238030507|emb|CAY68431.1| hypothetical protein PAS_chr1-4_0703 [Komagataella pastoris GS115]
Length = 614
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR R+++ + + VE+AS+DE+++DL +VV +++ + + + L +F + P
Sbjct: 128 YRRESRKIMRIFKLRCSKVEKASVDESFLDLGNVVFQKLLELFPVLKNSLDKSF-DDYLP 186
Query: 61 DNNDEDARKAGVMEWLGQVY-----SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT 115
+ +E +++ G+V D D ++++ +D L +A + +IR +
Sbjct: 187 EIPEELPEG---LDFKGEVIRCPETDDQDGLVLQDWDDIVML-LASMEAHDIRKQIEKAL 242
Query: 116 QFHCSAGIAHNK 127
+ S GI K
Sbjct: 243 DYTTSCGIGRVK 254
>gi|408380616|ref|ZP_11178199.1| DNA polymerase IV [Agrobacterium albertimagni AOL15]
gi|407745470|gb|EKF57003.1| DNA polymerase IV [Agrobacterium albertimagni AOL15]
Length = 364
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR ++ A+ SE++ I+E S+DEAY+D+T+
Sbjct: 85 YREVSEKIRAIFSEYTPIIEPLSLDEAYLDVTE 117
>gi|418791236|ref|ZP_13346999.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|418793736|ref|ZP_13349462.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|418799685|ref|ZP_13355351.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|418869364|ref|ZP_13423800.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|392755325|gb|EJA12235.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|392763416|gb|EJA20223.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|392764003|gb|EJA20809.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|392836512|gb|EJA92094.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
Length = 351
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|381395397|ref|ZP_09921097.1| DNA polymerase IV [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379328924|dbj|GAB56230.1| DNA polymerase IV [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 369
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
Y++ ++ + S ++N+VE S+DEAY+D+TDV
Sbjct: 79 YQDVSTQIREIFSRYTNLVEPLSLDEAYLDVTDV 112
>gi|423138823|ref|ZP_17126461.1| DNA polymerase IV [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379051377|gb|EHY69268.1| DNA polymerase IV [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 351
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|378949146|ref|YP_005206634.1| DinB family protein [Pseudomonas fluorescens F113]
gi|359759160|gb|AEV61239.1| DinB [Pseudomonas fluorescens F113]
Length = 353
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + S++++++E S+DEAY+D++ H
Sbjct: 81 YREASKEIHTIFSDYTDLIEPLSLDEAYLDVSASAH 116
>gi|378956298|ref|YP_005213785.1| DNA damage-inducible protein [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|438128284|ref|ZP_20873092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|357206909|gb|AET54955.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|434942122|gb|ELL48469.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
Length = 351
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|340028073|ref|ZP_08664136.1| DNA-directed DNA polymerase [Paracoccus sp. TRP]
Length = 363
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR ++V + E++ +VE S+DEAY+DLTD + R
Sbjct: 85 YRAVSQQVRDIFFEYTPLVEPLSLDEAYLDLTDYLQGR 122
>gi|422645704|ref|ZP_16708839.1| DNA polymerase IV [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330959253|gb|EGH59513.1| DNA polymerase IV [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 353
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A RE+ + ++++++E S+DEA++D++D H R+ + I ++QL T
Sbjct: 81 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDASHFSGSATRIAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDN 62
G P+
Sbjct: 141 SAGVAPNK 148
>gi|168465387|ref|ZP_02699269.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|418763352|ref|ZP_13319476.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|418766861|ref|ZP_13322933.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|418772033|ref|ZP_13328039.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|418774716|ref|ZP_13330677.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|418781329|ref|ZP_13337214.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|418784793|ref|ZP_13340630.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|418804608|ref|ZP_13360212.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|419789054|ref|ZP_14314737.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|419794108|ref|ZP_14319724.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|195631947|gb|EDX50467.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|392616198|gb|EIW98633.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|392616520|gb|EIW98953.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|392733608|gb|EIZ90810.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|392734596|gb|EIZ91778.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|392736872|gb|EIZ94034.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|392748056|gb|EJA05047.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|392749916|gb|EJA06892.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|392754324|gb|EJA11243.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|392769637|gb|EJA26366.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
Length = 351
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|37904227|gb|AAP68632.1| DinB [Bacillus thuringiensis serovar israelensis]
gi|83033544|gb|ABB97225.1| DinB [Bacillus thuringiensis]
gi|83033546|gb|ABB97226.1| DinB [Bacillus thuringiensis]
gi|83033632|gb|ABB97269.1| DinB [Bacillus thuringiensis]
gi|83033666|gb|ABB97286.1| DinB [Bacillus thuringiensis]
gi|83033678|gb|ABB97292.1| DinB [Bacillus thuringiensis]
gi|83033680|gb|ABB97293.1| DinB [Bacillus thuringiensis]
gi|83033682|gb|ABB97294.1| DinB [Bacillus thuringiensis]
gi|83033684|gb|ABB97295.1| DinB [Bacillus thuringiensis]
gi|83033686|gb|ABB97296.1| DinB [Bacillus thuringiensis]
gi|83033708|gb|ABB97307.1| DinB [Bacillus thuringiensis]
gi|83033710|gb|ABB97308.1| DinB [Bacillus thuringiensis]
Length = 133
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 6 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 38
>gi|213969172|ref|ZP_03397311.1| DNA polymerase IV [Pseudomonas syringae pv. tomato T1]
gi|301384832|ref|ZP_07233250.1| DNA polymerase IV [Pseudomonas syringae pv. tomato Max13]
gi|302064181|ref|ZP_07255722.1| DNA polymerase IV [Pseudomonas syringae pv. tomato K40]
gi|302130622|ref|ZP_07256612.1| DNA polymerase IV [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422657814|ref|ZP_16720253.1| DNA polymerase IV [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|213926170|gb|EEB59726.1| DNA polymerase IV [Pseudomonas syringae pv. tomato T1]
gi|331016424|gb|EGH96480.1| DNA polymerase IV [Pseudomonas syringae pv. lachrymans str.
M302278]
Length = 353
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ ++ ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHSIFRDYTDLIEPLSLDEAFLDVSDTHH 116
>gi|19746777|ref|NP_607913.1| DNA polymerase IV [Streptococcus pyogenes MGAS8232]
gi|24211640|sp|Q8NZI1.1|DPO4_STRP8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|19749010|gb|AAL98412.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS8232]
Length = 364
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD 124
>gi|198245459|ref|YP_002214268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|200390906|ref|ZP_03217517.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|207855798|ref|YP_002242449.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|375117745|ref|ZP_09762912.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|418845907|ref|ZP_13400684.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|418860672|ref|ZP_13415247.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|418864156|ref|ZP_13418691.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|421357900|ref|ZP_15808208.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421365109|ref|ZP_15815331.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421369118|ref|ZP_15819302.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421372564|ref|ZP_15822713.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421376176|ref|ZP_15826285.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421380746|ref|ZP_15830808.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421384111|ref|ZP_15834140.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421392611|ref|ZP_15842568.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421395871|ref|ZP_15845803.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421398530|ref|ZP_15848435.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421405287|ref|ZP_15855122.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421407887|ref|ZP_15857694.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421414038|ref|ZP_15863784.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421419576|ref|ZP_15869268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421423747|ref|ZP_15873398.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421425500|ref|ZP_15875135.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421429849|ref|ZP_15879443.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421437785|ref|ZP_15887299.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421440875|ref|ZP_15890350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421445723|ref|ZP_15895144.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421451323|ref|ZP_15900689.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|436635994|ref|ZP_20515843.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|436793964|ref|ZP_20521938.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436810464|ref|ZP_20529502.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436813788|ref|ZP_20531976.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436831512|ref|ZP_20536180.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436849648|ref|ZP_20540785.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436856061|ref|ZP_20545166.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436863047|ref|ZP_20549590.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436871522|ref|ZP_20554696.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436878673|ref|ZP_20559092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436886788|ref|ZP_20563194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436894544|ref|ZP_20568022.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436904671|ref|ZP_20574688.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436909852|ref|ZP_20576437.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436918105|ref|ZP_20581276.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436925673|ref|ZP_20586105.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436934146|ref|ZP_20590150.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436941426|ref|ZP_20594986.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436949416|ref|ZP_20599430.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436959531|ref|ZP_20603728.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436975250|ref|ZP_20611526.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436987057|ref|ZP_20615701.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436999594|ref|ZP_20620167.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437009914|ref|ZP_20623894.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437018290|ref|ZP_20626782.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437035425|ref|ZP_20633351.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437046726|ref|ZP_20638542.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437049477|ref|ZP_20640097.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437056709|ref|ZP_20644077.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437065161|ref|ZP_20648846.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437079059|ref|ZP_20656553.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437082082|ref|ZP_20658157.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437090106|ref|ZP_20662678.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437115035|ref|ZP_20669257.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437122676|ref|ZP_20672518.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437132779|ref|ZP_20678229.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437137886|ref|ZP_20680681.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437149199|ref|ZP_20688072.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437151842|ref|ZP_20689513.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437160794|ref|ZP_20694867.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437169509|ref|ZP_20699829.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437176703|ref|ZP_20703507.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437188110|ref|ZP_20710114.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437198466|ref|ZP_20711392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|437259572|ref|ZP_20717092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437272583|ref|ZP_20724333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437276752|ref|ZP_20726566.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437288221|ref|ZP_20730555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437309658|ref|ZP_20735586.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437329016|ref|ZP_20741106.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437338654|ref|ZP_20743859.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437381049|ref|ZP_20750293.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|437413030|ref|ZP_20753452.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437456141|ref|ZP_20760260.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437470138|ref|ZP_20765153.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437485143|ref|ZP_20769255.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437499181|ref|ZP_20773990.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437513661|ref|ZP_20777639.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437531189|ref|ZP_20780669.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437554615|ref|ZP_20784387.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437571560|ref|ZP_20788669.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437586130|ref|ZP_20793217.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437602499|ref|ZP_20798506.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437625841|ref|ZP_20805694.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437643106|ref|ZP_20808368.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437664518|ref|ZP_20814321.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437675779|ref|ZP_20816847.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|437687951|ref|ZP_20819620.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437710216|ref|ZP_20826321.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437726256|ref|ZP_20830061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437754980|ref|ZP_20834157.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437802361|ref|ZP_20838326.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|437907945|ref|ZP_20850084.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|438076074|ref|ZP_20857333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|438090824|ref|ZP_20860653.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438105066|ref|ZP_20866132.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|438114592|ref|ZP_20870208.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|445144062|ref|ZP_21386811.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|445153608|ref|ZP_21391455.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|445163964|ref|ZP_21393996.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445218195|ref|ZP_21402532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445219434|ref|ZP_21402735.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445298291|ref|ZP_21411325.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445329323|ref|ZP_21413381.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445343659|ref|ZP_21417128.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445362434|ref|ZP_21424194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|197939975|gb|ACH77308.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199603351|gb|EDZ01897.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|206707601|emb|CAR31883.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|326622012|gb|EGE28357.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|392811909|gb|EJA67907.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|392826056|gb|EJA81789.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|392831417|gb|EJA87050.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|395980620|gb|EJH89843.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395983413|gb|EJH92606.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395990137|gb|EJH99269.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|396000214|gb|EJI09229.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|396003403|gb|EJI12391.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396003795|gb|EJI12782.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396008172|gb|EJI17107.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396010915|gb|EJI19826.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396020673|gb|EJI29514.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396024598|gb|EJI33384.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396029819|gb|EJI38555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396030320|gb|EJI39054.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396035716|gb|EJI44388.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396035795|gb|EJI44466.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396037132|gb|EJI45783.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396048747|gb|EJI57291.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396056771|gb|EJI65244.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396057166|gb|EJI65638.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396064078|gb|EJI72466.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|396064158|gb|EJI72545.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|396065814|gb|EJI74182.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|434958517|gb|ELL52066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|434962967|gb|ELL56109.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434964956|gb|ELL57919.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434975296|gb|ELL67606.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434982469|gb|ELL74292.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434988225|gb|ELL79824.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434991494|gb|ELL82982.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434997574|gb|ELL88813.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435000737|gb|ELL91859.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435007349|gb|ELL98202.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435011320|gb|ELM02040.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435017193|gb|ELM07701.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435018358|gb|ELM08833.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435028225|gb|ELM18304.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435030837|gb|ELM20826.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435040066|gb|ELM29835.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435041286|gb|ELM31028.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435045257|gb|ELM34902.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435050201|gb|ELM39706.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435054114|gb|ELM43550.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435054196|gb|ELM43631.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435059638|gb|ELM48913.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435060135|gb|ELM49405.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435066814|gb|ELM55885.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435074792|gb|ELM63615.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435078196|gb|ELM66940.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435081882|gb|ELM70523.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435096227|gb|ELM84499.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435097015|gb|ELM85277.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435099809|gb|ELM88000.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435101415|gb|ELM89569.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435111250|gb|ELM99155.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435115124|gb|ELN02914.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435115281|gb|ELN03052.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435122326|gb|ELN09848.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435123502|gb|ELN10995.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435131008|gb|ELN18236.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435134520|gb|ELN21648.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435143315|gb|ELN30181.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435146307|gb|ELN33100.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435148368|gb|ELN35095.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435155428|gb|ELN41972.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435156030|gb|ELN42532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435164960|gb|ELN51020.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435167915|gb|ELN53768.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435173593|gb|ELN59090.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435183621|gb|ELN68582.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435185148|gb|ELN70036.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435190547|gb|ELN75129.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435196045|gb|ELN80401.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435203065|gb|ELN86851.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435203148|gb|ELN86932.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435206848|gb|ELN90340.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435215023|gb|ELN97771.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435216318|gb|ELN98793.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435222316|gb|ELO04432.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|435224104|gb|ELO06088.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435230298|gb|ELO11632.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435243491|gb|ELO23748.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435243913|gb|ELO24167.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435248013|gb|ELO27934.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435252608|gb|ELO32136.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435260187|gb|ELO39400.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435260401|gb|ELO39600.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435265646|gb|ELO44451.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435275141|gb|ELO53228.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435277393|gb|ELO55346.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435282999|gb|ELO60595.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435288989|gb|ELO65979.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435292206|gb|ELO68995.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435303719|gb|ELO79558.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435310147|gb|ELO84686.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|435310911|gb|ELO85232.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435316161|gb|ELO89352.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435318755|gb|ELO91664.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|435321675|gb|ELO94066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435328991|gb|ELP00449.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|444847202|gb|ELX72352.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|444852267|gb|ELX77348.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|444856698|gb|ELX81724.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444867633|gb|ELX92311.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444870975|gb|ELX95430.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444879083|gb|ELY03191.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444881463|gb|ELY05507.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444882093|gb|ELY06085.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|444884113|gb|ELY07957.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
Length = 351
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|139473158|ref|YP_001127873.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
gi|189044614|sp|A2RCQ1.1|DPO4_STRPG RecName: Full=DNA polymerase IV; Short=Pol IV
gi|134271404|emb|CAM29624.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
Length = 364
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD 124
>gi|403059725|ref|YP_006647942.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807051|gb|AFR04689.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 352
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y++ R++ + + +++++E S+DEAY+D+TD H
Sbjct: 79 YKSTSRQIREIFARYTSLIEPLSLDEAYLDVTDSPH 114
>gi|168819096|ref|ZP_02831096.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|409248740|ref|YP_006884580.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|205343975|gb|EDZ30739.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320084568|emb|CBY94360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 351
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|416568092|ref|ZP_11764531.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|363578194|gb|EHL62010.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
Length = 351
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|209559938|ref|YP_002286410.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
gi|209541139|gb|ACI61715.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
Length = 364
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD 124
>gi|168261272|ref|ZP_02683245.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|205350046|gb|EDZ36677.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
Length = 351
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|194442660|ref|YP_002039555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|238913297|ref|ZP_04657134.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|418807468|ref|ZP_13363026.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|418812007|ref|ZP_13367531.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|418815365|ref|ZP_13370866.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|418821453|ref|ZP_13376878.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|418831645|ref|ZP_13386595.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|418835646|ref|ZP_13390537.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|418838629|ref|ZP_13393471.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|418848833|ref|ZP_13403568.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|418854945|ref|ZP_13409608.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|194401323|gb|ACF61545.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|392776747|gb|EJA33433.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|392778731|gb|EJA35402.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|392791048|gb|EJA47541.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|392791817|gb|EJA48285.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|392798542|gb|EJA54813.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|392802921|gb|EJA59122.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|392814455|gb|EJA70406.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|392822180|gb|EJA77992.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392823119|gb|EJA78922.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
Length = 351
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|194449490|ref|YP_002044297.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|386590192|ref|YP_006086592.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|419727415|ref|ZP_14254383.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419733717|ref|ZP_14260612.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419739357|ref|ZP_14266105.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|419745492|ref|ZP_14272124.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419750239|ref|ZP_14276704.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|421572746|ref|ZP_16018392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421577654|ref|ZP_16023242.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421582244|ref|ZP_16027785.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421584356|ref|ZP_16029864.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|194407794|gb|ACF68013.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|381298604|gb|EIC39680.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|381298904|gb|EIC39978.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381300997|gb|EIC42053.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381305571|gb|EIC46481.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|381307432|gb|EIC48288.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|383797236|gb|AFH44318.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|402515681|gb|EJW23095.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402516242|gb|EJW23655.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402516572|gb|EJW23983.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402530874|gb|EJW38087.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
Length = 351
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|209694530|ref|YP_002262458.1| DNA polymerase IV [Aliivibrio salmonicida LFI1238]
gi|208008481|emb|CAQ78650.1| DNA polymerase IV [Aliivibrio salmonicida LFI1238]
Length = 350
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ +++ + SE+++++E S+DEAY+D+TD
Sbjct: 80 YKTVSKQIHKIFSEYTDLIEPLSLDEAYLDVTD 112
>gi|168232268|ref|ZP_02657326.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168238581|ref|ZP_02663639.1| DNA polymerase IV (Pol IV) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194468929|ref|ZP_03074913.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194735550|ref|YP_002113339.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197250353|ref|YP_002145295.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|375000050|ref|ZP_09724390.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|416526532|ref|ZP_11742437.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416536260|ref|ZP_11748327.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416552950|ref|ZP_11757412.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|440770406|ref|ZP_20949356.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|440771964|ref|ZP_20950874.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|194455293|gb|EDX44132.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194711052|gb|ACF90273.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197214056|gb|ACH51453.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197288572|gb|EDY27949.1| DNA polymerase IV (Pol IV) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|205333456|gb|EDZ20220.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|353074738|gb|EHB40498.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|363557584|gb|EHL41789.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363563486|gb|EHL47560.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363565366|gb|EHL49402.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|436411550|gb|ELP09499.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|436420192|gb|ELP18060.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
Length = 351
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|16759308|ref|NP_454925.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|16763696|ref|NP_459311.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29142919|ref|NP_806261.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|161615517|ref|YP_001589482.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|167553101|ref|ZP_02346851.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167993331|ref|ZP_02574426.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|197263932|ref|ZP_03164006.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|213162131|ref|ZP_03347841.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
gi|213425140|ref|ZP_03357890.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
gi|213649644|ref|ZP_03379697.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
gi|374979809|ref|ZP_09721141.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|378443760|ref|YP_005231392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378448629|ref|YP_005235988.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378698281|ref|YP_005180238.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378960717|ref|YP_005218203.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|378982854|ref|YP_005246009.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|378987715|ref|YP_005250879.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379699532|ref|YP_005241260.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|383495126|ref|YP_005395815.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|416424584|ref|ZP_11691765.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|416430856|ref|ZP_11695200.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|416439979|ref|ZP_11700560.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|416444663|ref|ZP_11703896.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|416453868|ref|ZP_11709942.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|416458465|ref|ZP_11712984.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|416464995|ref|ZP_11716575.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|416477004|ref|ZP_11721348.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|416484247|ref|ZP_11724043.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|416501678|ref|ZP_11732268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|416542219|ref|ZP_11751389.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|416576567|ref|ZP_11769149.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|416583841|ref|ZP_11773597.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|416595190|ref|ZP_11781004.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|416596485|ref|ZP_11781377.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|416605634|ref|ZP_11787066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|416610348|ref|ZP_11790020.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|416620916|ref|ZP_11796019.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|416632850|ref|ZP_11801564.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|416639881|ref|ZP_11804795.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|416648380|ref|ZP_11809025.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|416661634|ref|ZP_11815626.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|416671044|ref|ZP_11820533.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|416673706|ref|ZP_11821029.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|416697864|ref|ZP_11828234.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|416706698|ref|ZP_11831887.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|416713112|ref|ZP_11836754.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|416719557|ref|ZP_11841413.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|416723694|ref|ZP_11844360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|416734275|ref|ZP_11850930.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|416740195|ref|ZP_11854283.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|416745392|ref|ZP_11857324.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|416759363|ref|ZP_11864224.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|416764507|ref|ZP_11868111.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|416766916|ref|ZP_11869532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|418485151|ref|ZP_13054135.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|418490188|ref|ZP_13056740.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|418493277|ref|ZP_13059745.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|418497978|ref|ZP_13064393.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|418504273|ref|ZP_13070631.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|418508095|ref|ZP_13074403.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|418514207|ref|ZP_13080418.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|418525494|ref|ZP_13091474.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|421884459|ref|ZP_16315674.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|422024443|ref|ZP_16370923.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422029466|ref|ZP_16375725.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427545521|ref|ZP_18926234.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427561638|ref|ZP_18930997.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427600223|ref|ZP_18940314.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427602709|ref|ZP_18940599.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427627117|ref|ZP_18945508.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427650396|ref|ZP_18950263.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427659669|ref|ZP_18955216.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427664787|ref|ZP_18959964.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|427695319|ref|ZP_18964870.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|437839681|ref|ZP_20846302.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|54036996|sp|P63990.1|DPO4_SALTI RecName: Full=DNA polymerase IV; Short=Pol IV
gi|54040957|sp|P63989.1|DPO4_SALTY RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189027679|sp|A9MY13.1|DPO4_SALPB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|25300621|pir||AG0542 hypothetical protein DinP (DNA damage-inducible protein) STY0358
[imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18)
gi|16418815|gb|AAL19270.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16501599|emb|CAD08783.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29138551|gb|AAO70121.1| hypothetical protein DinP [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|161364881|gb|ABX68649.1| hypothetical protein SPAB_03289 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197242187|gb|EDY24807.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|205322378|gb|EDZ10217.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205328613|gb|EDZ15377.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|261245539|emb|CBG23333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267992007|gb|ACY86892.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301156929|emb|CBW16410.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312911282|dbj|BAJ35256.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321224974|gb|EFX50035.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322614606|gb|EFY11535.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620125|gb|EFY16997.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623419|gb|EFY20258.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322629283|gb|EFY26062.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632003|gb|EFY28757.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322637259|gb|EFY33961.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322642456|gb|EFY39058.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322646290|gb|EFY42804.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322652441|gb|EFY48795.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322653397|gb|EFY49730.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660455|gb|EFY56691.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322664607|gb|EFY60800.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322669340|gb|EFY65490.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322670886|gb|EFY67019.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322678875|gb|EFY74930.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322681904|gb|EFY77929.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322688030|gb|EFY83996.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323128631|gb|ADX16061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|323194385|gb|EFZ79580.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197800|gb|EFZ82932.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323203404|gb|EFZ88429.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323210380|gb|EFZ95272.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323214622|gb|EFZ99373.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323223178|gb|EGA07521.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323224851|gb|EGA09114.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323230055|gb|EGA14175.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323233793|gb|EGA17882.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323238513|gb|EGA22571.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323244201|gb|EGA28210.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323246361|gb|EGA30344.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323251987|gb|EGA35850.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257984|gb|EGA41663.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323259919|gb|EGA43550.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265067|gb|EGA48566.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323272630|gb|EGA56037.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|332987262|gb|AEF06245.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|366056129|gb|EHN20455.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|366065452|gb|EHN29642.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|366067037|gb|EHN31193.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|366071115|gb|EHN35215.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|366073755|gb|EHN37819.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|366080027|gb|EHN44008.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|366080401|gb|EHN44373.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|366829374|gb|EHN56250.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|372206263|gb|EHP19767.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|374354589|gb|AEZ46350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|379986173|emb|CCF87947.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|380461947|gb|AFD57350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|414023614|gb|EKT07037.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414023926|gb|EKT07336.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414025152|gb|EKT08487.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414025463|gb|EKT08787.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414037582|gb|EKT20346.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414042252|gb|EKT24790.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414051986|gb|EKT34061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414053392|gb|EKT35392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414057905|gb|EKT39634.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414061945|gb|EKT43317.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|414067531|gb|EKT47871.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|435297410|gb|ELO73693.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
Length = 351
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|421544771|ref|ZP_15990844.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|421546859|ref|ZP_15992901.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|421549106|ref|ZP_15995128.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|421553074|ref|ZP_15999043.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|421559533|ref|ZP_16005406.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|433537101|ref|ZP_20493603.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
gi|402322503|gb|EJU57961.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|402322684|gb|EJU58135.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|402324927|gb|EJU60349.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|402329587|gb|EJU64947.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|402335332|gb|EJU70598.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|432272862|gb|ELL27967.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
Length = 352
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|205351637|ref|YP_002225438.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|375122418|ref|ZP_09767582.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|445131501|ref|ZP_21381799.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|205271418|emb|CAR36226.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|326626668|gb|EGE33011.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|444850327|gb|ELX75429.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
Length = 351
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|62178884|ref|YP_215301.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|224582154|ref|YP_002635952.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|375113190|ref|ZP_09758360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|75484717|sp|Q57SU1.1|DPO4_SALCH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|62126517|gb|AAX64220.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|224466681|gb|ACN44511.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322713336|gb|EFZ04907.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
Length = 351
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|416510596|ref|ZP_11737194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416520105|ref|ZP_11740182.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416558896|ref|ZP_11760418.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|363549265|gb|EHL33622.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363556044|gb|EHL40261.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363576390|gb|EHL60224.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
Length = 351
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|385855494|ref|YP_005902007.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
gi|325204435|gb|ADY99888.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
Length = 352
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|262404618|ref|ZP_06081173.1| DNA polymerase IV [Vibrio sp. RC586]
gi|262349650|gb|EEY98788.1| DNA polymerase IV [Vibrio sp. RC586]
Length = 359
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y+N R++ A+ ++ ++E S+DEAY+D+T
Sbjct: 83 YKNVSRQIQAIFQRYTTVIEPLSLDEAYLDVT 114
>gi|421565721|ref|ZP_16011491.1| DNA polymerase IV [Neisseria meningitidis NM3081]
gi|402343298|gb|EJU78447.1| DNA polymerase IV [Neisseria meningitidis NM3081]
Length = 352
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|417324194|ref|ZP_12110519.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|353579640|gb|EHC41127.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
Length = 297
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 84 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 119
>gi|421892458|ref|ZP_16323115.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
gi|379981806|emb|CCG26837.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
Length = 364
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIHRIFKRYTDVVEPMSIDEAYLDVTD 124
>gi|410080079|ref|XP_003957620.1| hypothetical protein KAFR_0E03330 [Kazachstania africana CBS 2517]
gi|372464206|emb|CCF58485.1| hypothetical protein KAFR_0E03330 [Kazachstania africana CBS 2517]
Length = 633
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM----KSIGHIAASQLSNTFVV 56
YR R++ + E ++VE+AS+DE ++DL + +++ + + S L F+
Sbjct: 131 YRRESRKLFKIFKEHCDVVEKASVDEVFLDLGRLCFQKLMVTKEENPNSGLSILQEMFIG 190
Query: 57 GFGPDNNDEDARKAGV------MEWLGQVY-SDTDTSLMENTEDFQELAIAGVIVEEIRA 109
G N + V +E+ G VY + T+ ++E+ +D A+ I EIR
Sbjct: 191 G----NYQLRSHLPAVPDDLKNLEFEGDVYGASTEKPVIEDWDDVI-FALGSRITYEIRQ 245
Query: 110 AVLSKTQFHCSAGIAHNK 127
+ + S G++ K
Sbjct: 246 IIEDSLGYTTSCGLSRTK 263
>gi|417939897|ref|ZP_12583185.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK313]
gi|343388778|gb|EGV01363.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK313]
Length = 223
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|330807860|ref|YP_004352322.1| DNA-directed DNA polymerase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423695648|ref|ZP_17670138.1| DNA polymerase IV [Pseudomonas fluorescens Q8r1-96]
gi|327375968|gb|AEA67318.1| DNA-directed DNA polymerase (DNA polymerase IV); putative membrane
protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|388009296|gb|EIK70547.1| DNA polymerase IV [Pseudomonas fluorescens Q8r1-96]
Length = 353
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + S++++++E S+DEAY+D++ H
Sbjct: 81 YREASKEIHTIFSDYTDLIEPLSLDEAYLDVSASAH 116
>gi|312110865|ref|YP_003989181.1| DNA-directed DNA polymerase [Geobacillus sp. Y4.1MC1]
gi|336235296|ref|YP_004587912.1| DNA-directed DNA polymerase [Geobacillus thermoglucosidasius
C56-YS93]
gi|423719856|ref|ZP_17694038.1| DNA-directed DNA polymerase IV [Geobacillus thermoglucosidans
TNO-09.020]
gi|311215966|gb|ADP74570.1| DNA-directed DNA polymerase [Geobacillus sp. Y4.1MC1]
gi|335362151|gb|AEH47831.1| DNA-directed DNA polymerase [Geobacillus thermoglucosidasius
C56-YS93]
gi|383367102|gb|EID44386.1| DNA-directed DNA polymerase IV [Geobacillus thermoglucosidans
TNO-09.020]
Length = 400
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR+ +V L F+ ++E ASIDE Y+D+TD R
Sbjct: 89 YRDTSEKVFQFLKTFTPVLEPASIDEGYLDITDGYSSR 126
>gi|315634088|ref|ZP_07889377.1| DNA-directed DNA polymerase IV [Aggregatibacter segnis ATCC 33393]
gi|315477338|gb|EFU68081.1| DNA-directed DNA polymerase IV [Aggregatibacter segnis ATCC 33393]
Length = 368
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ + ++ I+E S+DEAY+D+TD
Sbjct: 87 YREVSRQIHQIFQRYTTIIEPLSLDEAYLDVTD 119
>gi|168240052|ref|ZP_02664984.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205340115|gb|EDZ26879.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
Length = 351
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|150391906|ref|YP_001321955.1| DNA polymerase IV [Alkaliphilus metalliredigens QYMF]
gi|149951768|gb|ABR50296.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
Length = 367
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R+V +L E +++VE SIDEA++D++D
Sbjct: 79 YREVSRQVFDILYEVTDLVEPLSIDEAFLDISD 111
>gi|345298003|ref|YP_004827361.1| DNA polymerase IV [Enterobacter asburiae LF7a]
gi|345091940|gb|AEN63576.1| DNA polymerase IV [Enterobacter asburiae LF7a]
Length = 352
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D+TD VH
Sbjct: 79 YKEASVHIREIFSRYTSLIEPLSLDEAYLDVTDSVH 114
>gi|304387164|ref|ZP_07369408.1| DNA-directed DNA polymerase IV [Neisseria meningitidis ATCC 13091]
gi|304338768|gb|EFM04878.1| DNA-directed DNA polymerase IV [Neisseria meningitidis ATCC 13091]
Length = 342
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 94 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 137
>gi|408480101|ref|ZP_11186320.1| DNA polymerase IV [Pseudomonas sp. R81]
Length = 352
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A +E+ + ++++++E S+DEAY+D++D H R+ + I ++QL T
Sbjct: 81 YKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSSHFGGSATRIAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDN 62
G P+
Sbjct: 141 SAGVAPNK 148
>gi|347537985|ref|YP_004845409.1| DNA polymerase IV [Pseudogulbenkiania sp. NH8B]
gi|345641162|dbj|BAK74995.1| DNA polymerase IV [Pseudogulbenkiania sp. NH8B]
Length = 359
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A ++++A+ +F+ +VE S+DEAY+D++ H
Sbjct: 83 YKTASQQILAIYQDFTELVEPLSLDEAYLDVSGRPH 118
>gi|255019441|ref|ZP_05291547.1| Error-prone repair protein UmuC [Acidithiobacillus caldus ATCC
51756]
gi|254971118|gb|EET28574.1| Error-prone repair protein UmuC [Acidithiobacillus caldus ATCC
51756]
Length = 427
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQL 50
Y + ++AVLS FS + E SIDE ++DL ++ SIG A +++
Sbjct: 78 YADMSNRMMAVLSSFSPVQEVYSIDECFLDLQGFAQVQLHSIGQAARARV 127
>gi|161870317|ref|YP_001599487.1| DNA polymerase IV [Neisseria meningitidis 053442]
gi|161595870|gb|ABX73530.1| putative DNA-damage inducible protein P [Neisseria meningitidis
053442]
Length = 342
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 94 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 137
>gi|417503427|ref|ZP_12173976.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353652129|gb|EHC94042.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
Length = 304
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 84 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 119
>gi|417388496|ref|ZP_12152607.1| DNA polymerase 4, partial [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353625495|gb|EHC74281.1| DNA polymerase 4, partial [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
Length = 306
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 84 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 119
>gi|315660146|ref|ZP_07913003.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
gi|315494827|gb|EFU83165.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
Length = 359
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN 52
YR E++++ ++ VE S+DEAY+D+T +V ++ASQ++N
Sbjct: 81 YRTISNEIMSIFRSYTEAVEPMSLDEAYLDITHLVRP------DLSASQIAN 126
>gi|296314223|ref|ZP_06864164.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
gi|296839124|gb|EFH23062.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
Length = 352
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|167035208|ref|YP_001670439.1| DNA polymerase IV [Pseudomonas putida GB-1]
gi|189027677|sp|B0KTK6.1|DPO4_PSEPG RecName: Full=DNA polymerase IV; Short=Pol IV
gi|166861696|gb|ABZ00104.1| DNA-directed DNA polymerase [Pseudomonas putida GB-1]
Length = 354
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ + +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHGIFRDYTELIEPLSLDEAYLDVSD 113
>gi|93117309|gb|ABE99572.1| DinB [Neisseria meningitidis]
Length = 335
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|421538412|ref|ZP_15984588.1| DNA polymerase IV [Neisseria meningitidis 93003]
gi|402316439|gb|EJU51984.1| DNA polymerase IV [Neisseria meningitidis 93003]
Length = 352
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|423389540|ref|ZP_17366766.1| DNA polymerase IV [Bacillus cereus BAG1X1-3]
gi|401641631|gb|EJS59348.1| DNA polymerase IV [Bacillus cereus BAG1X1-3]
Length = 412
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I + ++L
Sbjct: 88 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQVLLTELQLPCS 147
Query: 56 VGFGPD 61
+G P+
Sbjct: 148 IGIAPN 153
>gi|417536912|ref|ZP_12189937.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353669430|gb|EHD06335.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 300
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 84 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 119
>gi|357639281|ref|ZP_09137154.1| DNA polymerase IV [Streptococcus urinalis 2285-97]
gi|418417287|ref|ZP_12990483.1| DNA polymerase IV [Streptococcus urinalis FB127-CNA-2]
gi|357587735|gb|EHJ57143.1| DNA polymerase IV [Streptococcus urinalis 2285-97]
gi|410871763|gb|EKS19709.1| DNA polymerase IV [Streptococcus urinalis FB127-CNA-2]
Length = 364
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G EV A+ ++++VE SIDEAY+D+T+
Sbjct: 92 YKAVGLEVRAIFKRYTDLVEPMSIDEAYLDVTE 124
>gi|239638048|ref|ZP_04679007.1| DNA polymerase IV [Staphylococcus warneri L37603]
gi|239596331|gb|EEQ78869.1| DNA polymerase IV [Staphylococcus warneri L37603]
Length = 356
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN 52
YR A ++++ + ++ IVE S+DEAY+D+T +V + AS+++N
Sbjct: 81 YREASQKIMDIFRSYTEIVEPLSLDEAYLDITHLVRP------DLPASKIAN 126
>gi|261377452|ref|ZP_05982025.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
gi|269146178|gb|EEZ72596.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
Length = 352
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|93117315|gb|ABE99575.1| DinB [Neisseria meningitidis]
gi|93117317|gb|ABE99576.1| DinB [Neisseria meningitidis]
Length = 336
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|417331453|ref|ZP_12115694.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353585430|gb|EHC45268.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
Length = 298
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|385323903|ref|YP_005878342.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|385328701|ref|YP_005883004.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|385850975|ref|YP_005897490.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|416169881|ref|ZP_11608241.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|416182644|ref|ZP_11612119.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|416187280|ref|ZP_11614150.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|416212875|ref|ZP_11622033.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|421551063|ref|ZP_15997063.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|421555045|ref|ZP_16000984.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|421556829|ref|ZP_16002739.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|421561526|ref|ZP_16007368.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|433471763|ref|ZP_20429146.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|433477892|ref|ZP_20435210.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|433488729|ref|ZP_20445887.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|433509644|ref|ZP_20466510.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|433511655|ref|ZP_20468478.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|433522170|ref|ZP_20478857.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|433526276|ref|ZP_20482906.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|433539224|ref|ZP_20495699.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
gi|261392290|emb|CAX49816.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|308389553|gb|ADO31873.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|325130510|gb|EGC53265.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|325134571|gb|EGC57215.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|325136508|gb|EGC59112.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|325144732|gb|EGC67027.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|325205798|gb|ADZ01251.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|389605414|emb|CCA44332.1| DNA polymerase IV [Neisseria meningitidis alpha522]
gi|402328597|gb|EJU63964.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|402332198|gb|EJU67529.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|402336083|gb|EJU71345.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|402337822|gb|EJU73068.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|432207720|gb|ELK63708.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|432214708|gb|ELK70604.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|432222595|gb|ELK78386.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|432246145|gb|ELL01602.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|432246416|gb|ELL01864.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|432258548|gb|ELL13830.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|432261040|gb|ELL16297.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|432272947|gb|ELL28049.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
Length = 352
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|213421547|ref|ZP_03354613.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
Length = 253
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|93117307|gb|ABE99571.1| DinB [Neisseria meningitidis]
Length = 329
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 98 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 141
>gi|354722197|ref|ZP_09036412.1| DNA polymerase IV [Enterobacter mori LMG 25706]
Length = 352
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D+TD VH
Sbjct: 79 YKEASIHIREIFSRYTSLIEPLSLDEAYLDVTDSVH 114
>gi|385341648|ref|YP_005895519.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|385857505|ref|YP_005904017.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
gi|325201854|gb|ADY97308.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|325208394|gb|ADZ03846.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
Length = 352
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|433469657|ref|ZP_20427074.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
gi|432202554|gb|ELK58614.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
Length = 352
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|385338282|ref|YP_005892155.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|433475868|ref|ZP_20433205.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|433513766|ref|ZP_20470555.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|433515222|ref|ZP_20471995.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|433518610|ref|ZP_20475345.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|433524427|ref|ZP_20481085.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|433528518|ref|ZP_20485127.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|433530726|ref|ZP_20487310.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|433532988|ref|ZP_20489550.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|433534767|ref|ZP_20491305.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
gi|319410696|emb|CBY91075.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|432208977|gb|ELK64948.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|432247075|gb|ELL02518.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|432251130|gb|ELL06502.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|432255018|gb|ELL10351.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|432258654|gb|ELL13935.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|432265319|gb|ELL20515.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|432265536|gb|ELL20728.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|432266344|gb|ELL21530.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|432271036|gb|ELL26166.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
Length = 352
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|121635137|ref|YP_975382.1| DNA polymerase IV [Neisseria meningitidis FAM18]
gi|385340339|ref|YP_005894211.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|416178473|ref|ZP_11610615.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|416192460|ref|ZP_11616642.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|416203316|ref|ZP_11620044.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|421542743|ref|ZP_15988849.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|433467593|ref|ZP_20425047.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|433492845|ref|ZP_20449935.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|433494972|ref|ZP_20452039.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|433497141|ref|ZP_20454176.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|433499204|ref|ZP_20456211.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|433501175|ref|ZP_20458160.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|433503328|ref|ZP_20460288.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
gi|189027672|sp|A1KUQ3.1|DPO4_NEIMF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|120866843|emb|CAM10601.1| impB/mucB/samB family protein [Neisseria meningitidis FAM18]
gi|325132193|gb|EGC54889.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|325138126|gb|EGC60699.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|325142626|gb|EGC65017.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|325198583|gb|ADY94039.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|402316662|gb|EJU52204.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|432202427|gb|ELK58491.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|432227708|gb|ELK83416.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|432229620|gb|ELK85305.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|432233226|gb|ELK88858.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|432233631|gb|ELK89257.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|432235148|gb|ELK90765.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|432239638|gb|ELK95186.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
Length = 352
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|403238203|ref|ZP_10916789.1| DNA polymerase IV [Bacillus sp. 10403023]
Length = 417
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR+A + +L ++++VE SIDE Y+D+TD E +SI + +L
Sbjct: 88 YRSASLAMFDILRSYTDLVEPVSIDEGYLDITDCYEKGSPIEIARSIQETVSKKLLLPCS 147
Query: 56 VGFGPD 61
+G P+
Sbjct: 148 IGIAPN 153
>gi|284047447|ref|YP_003397786.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
gi|283951668|gb|ADB46471.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
Length = 382
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
Y RE+ + EFS +VE SIDEA++DLT +
Sbjct: 81 YTEISREIRQIFQEFSPVVEPLSIDEAFLDLTGM 114
>gi|254581978|ref|XP_002496974.1| ZYRO0D12452p [Zygosaccharomyces rouxii]
gi|238939866|emb|CAR28041.1| ZYRO0D12452p [Zygosaccharomyces rouxii]
Length = 600
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM---KSIGHIAASQLSNTFVVG 57
YR R++ + +E+ ++ E+AS+DE ++DL + +++ + + L F G
Sbjct: 131 YRRESRKIFKIFTEYFDLAEKASVDEVFLDLGRLCLKKLMFDDELQWPSIKYLREKFAQG 190
Query: 58 -FGPDNN----DEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
+ D+N + +K +E++G ++ D + + D A+ I + +R +
Sbjct: 191 QYNLDDNLPPLPSELQK---IEFIGDTFNPNDKPISD--WDDVLFALGSQITQHVRDEIE 245
Query: 113 SKTQFHCSAGIAHNK 127
+ + S GIA K
Sbjct: 246 NNLGYTTSCGIARTK 260
>gi|254805229|ref|YP_003083450.1| DNA polymerase IV [Neisseria meningitidis alpha14]
gi|421568021|ref|ZP_16013752.1| DNA polymerase IV [Neisseria meningitidis NM3001]
gi|254668771|emb|CBA06675.1| DNA-damage-inducible protein p [Neisseria meningitidis alpha14]
gi|254672331|emb|CBA05492.1| DNA polymerase IV [Neisseria meningitidis alpha275]
gi|402342966|gb|EJU78122.1| DNA polymerase IV [Neisseria meningitidis NM3001]
Length = 352
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|228998933|ref|ZP_04158516.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus mycoides Rock3-17]
gi|229006465|ref|ZP_04164118.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus mycoides Rock1-4]
gi|228754778|gb|EEM04170.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus mycoides Rock1-4]
gi|228760808|gb|EEM09771.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus mycoides Rock3-17]
Length = 412
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A E+ +LS F+ ++ SIDE Y+D+TD
Sbjct: 88 YREASFEMFQILSRFTEKIQPVSIDEGYLDITD 120
>gi|229157727|ref|ZP_04285802.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus ATCC 4342]
gi|228625684|gb|EEK82436.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus ATCC 4342]
Length = 412
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I + ++L
Sbjct: 88 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQVLLTELQLPCS 147
Query: 56 VGFGPD 61
+G P+
Sbjct: 148 IGIAPN 153
>gi|401762424|ref|YP_006577431.1| DNA polymerase IV [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|400173958|gb|AFP68807.1| DNA polymerase IV [Enterobacter cloacae subsp. cloacae ENHKU01]
Length = 352
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D+TD +H
Sbjct: 79 YKEASNHIREIFSRYTSLIEPLSLDEAYLDVTDSLH 114
>gi|93117311|gb|ABE99573.1| DinB [Neisseria meningitidis]
gi|93117319|gb|ABE99577.1| DinB [Neisseria meningitidis]
Length = 336
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|148546475|ref|YP_001266577.1| DNA polymerase IV [Pseudomonas putida F1]
gi|395447671|ref|YP_006387924.1| DNA polymerase IV [Pseudomonas putida ND6]
gi|189027676|sp|A5VZT3.1|DPO4_PSEP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|148510533|gb|ABQ77393.1| DNA-directed DNA polymerase [Pseudomonas putida F1]
gi|388561668|gb|AFK70809.1| DNA polymerase IV [Pseudomonas putida ND6]
Length = 354
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ + +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHTIFRDYTELIEPLSLDEAYLDVSD 113
>gi|375006394|ref|YP_004975178.1| DNA polymerase IV [Azospirillum lipoferum 4B]
gi|357427652|emb|CBS90597.1| DNA polymerase IV [Azospirillum lipoferum 4B]
Length = 395
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM 39
Y+ G A++ F+ +VE SIDEAY+DLT V ER+
Sbjct: 120 YKEVGHRARAIMEAFTPLVEPISIDEAYLDLTG-VEERL 157
>gi|298368851|ref|ZP_06980169.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
gi|298282854|gb|EFI24341.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
Length = 352
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T++ Q++ A + E+IRA +L++T SAGIA NK
Sbjct: 104 DEAYLDVTDNLQQIPYASDVAEKIRAEILAETGLTASAGIAPNK 147
>gi|170723173|ref|YP_001750861.1| DNA polymerase IV [Pseudomonas putida W619]
gi|169761176|gb|ACA74492.1| DNA-directed DNA polymerase [Pseudomonas putida W619]
Length = 354
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ + +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHGIFRDYTELIEPLSLDEAYLDVSD 113
>gi|387895422|ref|YP_006325719.1| DNA polymerase IV [Pseudomonas fluorescens A506]
gi|387163386|gb|AFJ58585.1| DNA polymerase IV [Pseudomonas fluorescens A506]
Length = 352
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A +E+ + ++++++E S+DEAY+D++D H R+ + I ++QL T
Sbjct: 81 YKEASKEIQLIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATRIAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDN 62
G P+
Sbjct: 141 SAGVAPNK 148
>gi|396463787|ref|XP_003836504.1| hypothetical protein LEMA_P040400.1 [Leptosphaeria maculans JN3]
gi|312213057|emb|CBX93139.1| hypothetical protein LEMA_P040400.1 [Leptosphaeria maculans JN3]
Length = 706
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 30/144 (20%)
Query: 1 YRNAGREVIAVLSEFS--NIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTF---- 54
+RNA +++ A L FS + ER +DE ++D++D++ + + AS N+F
Sbjct: 166 FRNASKQLYAYLRSFSWNSRCERLGLDEVFMDVSDMIDYNLA----LLASATQNSFFLLS 221
Query: 55 ----VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ------ELAIAGVIV 104
VGF + DA + +G VY +T + L +A +
Sbjct: 222 KEDPTVGF-----ELDATRV-----VGHVYPETVHRSTSDVPSSSSDPLHIRLLLASHLA 271
Query: 105 EEIRAAVLSKTQFHCSAGIAHNKV 128
+ +R + +T + +AGIA NK+
Sbjct: 272 QHLRTRLEEETGYTATAGIATNKL 295
>gi|253689653|ref|YP_003018843.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756231|gb|ACT14307.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 352
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y++ R++ + + +++++E S+DEAY+D+TD H
Sbjct: 79 YKSTSRQIRDIFARYTSLIEPLSLDEAYLDVTDSPH 114
>gi|167761375|ref|ZP_02433502.1| hypothetical protein CLOSCI_03783 [Clostridium scindens ATCC 35704]
gi|167661041|gb|EDS05171.1| ImpB/MucB/SamB family protein [Clostridium scindens ATCC 35704]
Length = 422
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y R + +L E+S VE+ SIDE Y+D+T +H
Sbjct: 89 YERCSRAFVNILKEYSPDVEQYSIDEVYMDMTQTIH 124
>gi|218768451|ref|YP_002342963.1| DNA polymerase IV [Neisseria meningitidis Z2491]
gi|433480065|ref|ZP_20437352.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|433520223|ref|ZP_20476941.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|433541303|ref|ZP_20497752.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
gi|22095638|sp|Q9JRG1.1|DPO4_NEIMA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|6900413|emb|CAB72023.1| putative DNA-damage inducible protein P [Neisseria meningitidis]
gi|121052459|emb|CAM08795.1| impB/mucB/samB family protein [Neisseria meningitidis Z2491]
gi|432215025|gb|ELK70916.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|432253761|gb|ELL09100.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|432276950|gb|ELL32002.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
Length = 352
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|403384071|ref|ZP_10926128.1| DNA polymerase IV [Kurthia sp. JC30]
Length = 408
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR A + + +L ++++VE SIDE Y+D+TD+
Sbjct: 80 YRKASKAMFDMLRSYTHLVEPVSIDEGYMDVTDI 113
>gi|421524145|ref|ZP_15970770.1| DNA polymerase IV [Pseudomonas putida LS46]
gi|402751956|gb|EJX12465.1| DNA polymerase IV [Pseudomonas putida LS46]
Length = 354
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ + +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHTIFRDYTELIEPLSLDEAYLDVSD 113
>gi|421563647|ref|ZP_16009463.1| DNA polymerase IV [Neisseria meningitidis NM2795]
gi|421907165|ref|ZP_16337050.1| DNA polymerase IV [Neisseria meningitidis alpha704]
gi|393291682|emb|CCI73036.1| DNA polymerase IV [Neisseria meningitidis alpha704]
gi|402340132|gb|EJU75335.1| DNA polymerase IV [Neisseria meningitidis NM2795]
Length = 352
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|229174821|ref|ZP_04302342.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus MM3]
gi|423457670|ref|ZP_17434467.1| DNA polymerase IV [Bacillus cereus BAG5X2-1]
gi|228608653|gb|EEK65954.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus MM3]
gi|401148054|gb|EJQ55547.1| DNA polymerase IV [Bacillus cereus BAG5X2-1]
Length = 412
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I + ++L
Sbjct: 88 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQVLLTELQLPCS 147
Query: 56 VGFGPD 61
+G P+
Sbjct: 148 IGIAPN 153
>gi|289806282|ref|ZP_06536911.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
Length = 288
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|26987938|ref|NP_743363.1| DNA polymerase IV [Pseudomonas putida KT2440]
gi|38257491|sp|Q88NK4.1|DPO4_PSEPK RecName: Full=DNA polymerase IV; Short=Pol IV
gi|24982649|gb|AAN66827.1|AE016311_7 DNA-damage-inducible protein P [Pseudomonas putida KT2440]
Length = 354
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ + +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHTIFRDYTELIEPLSLDEAYLDVSD 113
>gi|397695712|ref|YP_006533595.1| DNA polymerase IV [Pseudomonas putida DOT-T1E]
gi|397332442|gb|AFO48801.1| DNA polymerase IV [Pseudomonas putida DOT-T1E]
Length = 354
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ + +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHTIFRDYTELIEPLSLDEAYLDVSD 113
>gi|419781208|ref|ZP_14307040.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK100]
gi|383184600|gb|EIC77114.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK100]
Length = 335
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 74 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 106
>gi|312962838|ref|ZP_07777325.1| DNA polymerase IV [Pseudomonas fluorescens WH6]
gi|311282865|gb|EFQ61459.1| DNA polymerase IV [Pseudomonas fluorescens WH6]
Length = 358
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A +E+ + ++++++E S+DEAY+D++D H R+ + I ++QL T
Sbjct: 87 YKEASKEIQLIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATRIAQDIRRRVSNQLHITV 146
Query: 55 VVGFGPDN 62
G P+
Sbjct: 147 SAGVAPNK 154
>gi|302382770|ref|YP_003818593.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
gi|302193398|gb|ADL00970.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
Length = 358
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR +++ A+ ++++ +VE S+DEAY+D+TD
Sbjct: 83 YRAVSKQIQAIFADYTPLVEPLSLDEAYLDVTD 115
>gi|206976238|ref|ZP_03237146.1| putative DNA-damage-inducible protein P [Bacillus cereus H3081.97]
gi|217961637|ref|YP_002340207.1| DNA polymerase IV [Bacillus cereus AH187]
gi|222097593|ref|YP_002531650.1| DNA polymerase iv [Bacillus cereus Q1]
gi|229140880|ref|ZP_04269425.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus BDRD-ST26]
gi|375286151|ref|YP_005106590.1| DNA-damage-inducible protein P [Bacillus cereus NC7401]
gi|423354645|ref|ZP_17332270.1| DNA polymerase IV [Bacillus cereus IS075]
gi|423374048|ref|ZP_17351387.1| DNA polymerase IV [Bacillus cereus AND1407]
gi|423566890|ref|ZP_17543137.1| DNA polymerase IV [Bacillus cereus MSX-A12]
gi|206745434|gb|EDZ56833.1| putative DNA-damage-inducible protein P [Bacillus cereus H3081.97]
gi|217065280|gb|ACJ79530.1| putative DNA-damage-inducible protein P [Bacillus cereus AH187]
gi|221241651|gb|ACM14361.1| possible DNA-damage-inducible protein P, DNA polymerase IV
[Bacillus cereus Q1]
gi|228642670|gb|EEK98956.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus BDRD-ST26]
gi|358354678|dbj|BAL19850.1| DNA-damage-inducible protein P, putative [Bacillus cereus NC7401]
gi|401086491|gb|EJP94714.1| DNA polymerase IV [Bacillus cereus IS075]
gi|401094863|gb|EJQ02933.1| DNA polymerase IV [Bacillus cereus AND1407]
gi|401215405|gb|EJR22122.1| DNA polymerase IV [Bacillus cereus MSX-A12]
Length = 412
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I + ++L
Sbjct: 88 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGSPLEIAKMIQQVLLTELQLPCS 147
Query: 56 VGFGPD 61
+G P+
Sbjct: 148 IGIAPN 153
>gi|426402348|ref|YP_007021319.1| DNA polymerase IV [Bdellovibrio bacteriovorus str. Tiberius]
gi|425859016|gb|AFY00052.1| DNA polymerase IV [Bdellovibrio bacteriovorus str. Tiberius]
Length = 356
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
Y+ R+V +L F+N +E S+DEAY+D+TD
Sbjct: 79 YKAESRKVREILERFTNKIEPLSLDEAYLDVTDC 112
>gi|418636789|ref|ZP_13199128.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
gi|374840485|gb|EHS03978.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
Length = 359
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN 52
YR E++++ ++ VE S+DEAY+D+T +V + ASQ++N
Sbjct: 81 YRTISNEIMSIFRSYTEAVEPMSLDEAYLDITHLVRP------DLPASQIAN 126
>gi|331267031|ref|YP_004326661.1| DNA polymerase IV (Pol IV) [Streptococcus oralis Uo5]
gi|326683703|emb|CBZ01321.1| DNA polymerase IV (Pol IV) [Streptococcus oralis Uo5]
Length = 353
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|386010848|ref|YP_005929125.1| DinP [Pseudomonas putida BIRD-1]
gi|313497554|gb|ADR58920.1| DinP [Pseudomonas putida BIRD-1]
Length = 354
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ + +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHTIFRDYTELIEPLSLDEAYLDVSD 113
>gi|228992888|ref|ZP_04152813.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus pseudomycoides DSM 12442]
gi|228766937|gb|EEM15575.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus pseudomycoides DSM 12442]
Length = 417
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A E+ +LS F+ ++ SIDE Y+D+TD
Sbjct: 93 YREASFEMFQILSRFTEKIQPVSIDEGYLDITD 125
>gi|419818062|ref|ZP_14342173.1| DNA polymerase IV, partial [Streptococcus sp. GMD4S]
gi|404465100|gb|EKA10608.1| DNA polymerase IV, partial [Streptococcus sp. GMD4S]
Length = 321
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 60 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 92
>gi|421082849|ref|ZP_15543729.1| DNA polymerase IV [Pectobacterium wasabiae CFBP 3304]
gi|401702465|gb|EJS92708.1| DNA polymerase IV [Pectobacterium wasabiae CFBP 3304]
Length = 352
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y++ R++ + + ++ ++E S+DEAY+D+TD H R+ + I A++L+ T
Sbjct: 79 YKSTSRQIREIFARYTPLIEPLSLDEAYLDVTDSPHCNGSATRIAEEIRRTIANELNLTA 138
Query: 55 VVGFGP 60
G P
Sbjct: 139 SAGIAP 144
>gi|385784018|ref|YP_005760191.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|418413694|ref|ZP_12986910.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|339894274|emb|CCB53543.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|410877332|gb|EKS25224.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 359
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN 52
YR E++++ ++ VE S+DEAY+D+T +V + ASQ++N
Sbjct: 81 YRTISNEIMSIFRSYTEAVEPMSLDEAYLDITHLVRP------DLPASQIAN 126
>gi|315612524|ref|ZP_07887437.1| DNA-directed DNA polymerase IV [Streptococcus sanguinis ATCC 49296]
gi|315315505|gb|EFU63544.1| DNA-directed DNA polymerase IV [Streptococcus sanguinis ATCC 49296]
Length = 353
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|436698182|ref|ZP_20518280.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|434998701|gb|ELL89917.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
Length = 156
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>gi|365920653|ref|ZP_09444978.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
gi|364577797|gb|EHM55045.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
Length = 354
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR ++ A++ +++VE S+DEAY+D++D HER
Sbjct: 81 YRAVSLQIRALMLAITDLVEPLSLDEAYLDVSDSPHER 118
>gi|289550388|ref|YP_003471292.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
gi|289179920|gb|ADC87165.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
Length = 359
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN 52
YR E++++ ++ VE S+DEAY+D+T +V + ASQ++N
Sbjct: 81 YRTISNEIMSIFRSYTEAVEPMSLDEAYLDITHLVRP------DLPASQIAN 126
>gi|423693381|ref|ZP_17667901.1| DNA polymerase IV [Pseudomonas fluorescens SS101]
gi|387997531|gb|EIK58860.1| DNA polymerase IV [Pseudomonas fluorescens SS101]
Length = 352
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A +E+ + ++++++E S+DEAY+D++D H R+ + I ++QL T
Sbjct: 81 YKEASKEIQLIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATRIAQDIRRRVSNQLHITV 140
Query: 55 VVGFGPDN 62
G P+
Sbjct: 141 SAGVAPNK 148
>gi|322374939|ref|ZP_08049453.1| DNA polymerase IV [Streptococcus sp. C300]
gi|321280439|gb|EFX57478.1| DNA polymerase IV [Streptococcus sp. C300]
Length = 353
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|270293387|ref|ZP_06199596.1| DNA polymerase IV [Streptococcus sp. M143]
gi|270278236|gb|EFA24084.1| DNA polymerase IV [Streptococcus sp. M143]
Length = 353
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|93117313|gb|ABE99574.1| DinB [Neisseria meningitidis]
Length = 336
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|154247780|ref|YP_001418738.1| DNA polymerase IV [Xanthobacter autotrophicus Py2]
gi|154161865|gb|ABS69081.1| DNA-directed DNA polymerase [Xanthobacter autotrophicus Py2]
Length = 432
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR GR+V A++ + + +VE SIDEA++DL+
Sbjct: 117 YRTVGRQVRAMMQQLTPLVEPLSIDEAFLDLS 148
>gi|406587280|ref|ZP_11062181.1| DNA polymerase IV [Streptococcus sp. GMD1S]
gi|404473237|gb|EKA17587.1| DNA polymerase IV [Streptococcus sp. GMD1S]
Length = 353
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|406577817|ref|ZP_11053404.1| DNA polymerase IV [Streptococcus sp. GMD6S]
gi|404459467|gb|EKA05825.1| DNA polymerase IV [Streptococcus sp. GMD6S]
Length = 353
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|378725578|gb|EHY52037.1| DNA polymerase kappa subunit [Exophiala dermatitidis NIH/UT8656]
Length = 732
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y +EV A+L+E+ E ASIDEAY+++T+ H
Sbjct: 207 YTAKAKEVRAILAEYDPRFESASIDEAYLNITEYCH 242
>gi|417934158|ref|ZP_12577478.1| DNA polymerase IV [Streptococcus mitis bv. 2 str. F0392]
gi|340770728|gb|EGR93243.1| DNA polymerase IV [Streptococcus mitis bv. 2 str. F0392]
Length = 353
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|398014792|ref|XP_003860586.1| DNA polymerase eta, putative, partial [Leishmania donovani]
gi|322498808|emb|CBZ33880.1| DNA polymerase eta, putative, partial [Leishmania donovani]
Length = 197
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 1 YRNAGREVIAVLSEFSNI-VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFG 59
YR+A R+V ++L+ + VE+ S+DEAY+D+T+ + + + AA +
Sbjct: 113 YRHASRQVFSILAATPGVQVEKGSVDEAYVDVTEAARQELAEVRAAAAGASLDPLADVME 172
Query: 60 PDNNDEDARKAGVMEWLGQVYSDTDTSL 87
P + R+A + W +S TSL
Sbjct: 173 PSTRLIEDRRAEMEAW----FSARGTSL 196
>gi|419797103|ref|ZP_14322604.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
gi|385698791|gb|EIG29135.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
Length = 382
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 134 DEAYLDVTHNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 177
>gi|401684215|ref|ZP_10816098.1| ImpB/MucB/SamB family protein [Streptococcus sp. BS35b]
gi|418975100|ref|ZP_13523009.1| DNA polymerase IV [Streptococcus oralis SK1074]
gi|383348471|gb|EID26430.1| DNA polymerase IV [Streptococcus oralis SK1074]
gi|400186520|gb|EJO20732.1| ImpB/MucB/SamB family protein [Streptococcus sp. BS35b]
Length = 353
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|339488907|ref|YP_004703435.1| DNA polymerase IV [Pseudomonas putida S16]
gi|338839750|gb|AEJ14555.1| DNA polymerase IV [Pseudomonas putida S16]
Length = 354
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ + +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHTIFRDYTELIEPLSLDEAYLDVSD 113
>gi|417793255|ref|ZP_12440535.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK255]
gi|334273503|gb|EGL91847.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK255]
Length = 345
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|431804007|ref|YP_007230910.1| DNA polymerase IV [Pseudomonas putida HB3267]
gi|430794772|gb|AGA74967.1| DNA polymerase IV [Pseudomonas putida HB3267]
Length = 354
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ + +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHTIFRDYTELIEPLSLDEAYLDVSD 113
>gi|456011721|gb|EMF45458.1| DNA polymerase IV [Planococcus halocryophilus Or1]
Length = 752
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
YR A + + +L ++++VE SIDE Y+D+T++ R
Sbjct: 101 YRAASKAMFEILRTYTDMVEPVSIDEGYVDVTELTETR 138
>gi|420371894|ref|ZP_14872241.1| impB/mucB/samB family protein [Shigella flexneri 1235-66]
gi|391318713|gb|EIQ75814.1| impB/mucB/samB family protein [Shigella flexneri 1235-66]
Length = 357
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER-MKSIGH-IAASQLSNT-FVVG 57
Y + V+++L E S VE SIDEA+ DLT V + R + G I A+ L T VG
Sbjct: 77 YADMSSRVMSILEELSPRVEMYSIDEAFCDLTGVRNCRDLTDFGREIRATILQKTRLTVG 136
Query: 58 FGPDNNDEDARKA--GVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEI 107
G A+ A +W Q D S ME Q +A + V+E+
Sbjct: 137 VGIAQTKTLAKLANHAAKKWQEQTGGVVDLSNMER----QRKLMAALPVDEV 184
>gi|300715466|ref|YP_003740269.1| Damage inducible protein P (DNA polymerase IV) [Erwinia billingiae
Eb661]
gi|299061302|emb|CAX58411.1| Damage inducible protein P (DNA polymerase IV) [Erwinia billingiae
Eb661]
Length = 351
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER------MKSIGHIAASQLSNTF 54
Y+ A + + + S +++++E S+DEAY+D+TD H + I A +L+ T
Sbjct: 79 YKEASQHIREIFSRYTSLIEPLSLDEAYLDVTDSPHCHGSATLMARDIRQTIARELNLTA 138
Query: 55 VVGFGP 60
G P
Sbjct: 139 SAGIAP 144
>gi|169350490|ref|ZP_02867428.1| hypothetical protein CLOSPI_01258 [Clostridium spiroforme DSM 1552]
gi|169292810|gb|EDS74943.1| DNA polymerase IV [Clostridium spiroforme DSM 1552]
Length = 407
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38
Y + +++ +S+++E ASIDE Y+D+T ++ ER
Sbjct: 84 YHQLSNDFFNIIASYSDVLEVASIDECYVDVTKIIQER 121
>gi|323491711|ref|ZP_08096889.1| DNA polymerase IV [Vibrio brasiliensis LMG 20546]
gi|323314073|gb|EGA67159.1| DNA polymerase IV [Vibrio brasiliensis LMG 20546]
Length = 333
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 35
Y+ +++ A+ S ++ ++E S+DEAY+D+TD +
Sbjct: 62 YKAVSKQIHAIFSRYTKLIEPLSLDEAYLDVTDCL 96
>gi|303326238|ref|ZP_07356681.1| DNA polymerase IV [Desulfovibrio sp. 3_1_syn3]
gi|345891911|ref|ZP_08842739.1| hypothetical protein HMPREF1022_01399 [Desulfovibrio sp.
6_1_46AFAA]
gi|302864154|gb|EFL87085.1| DNA polymerase IV [Desulfovibrio sp. 3_1_syn3]
gi|345047771|gb|EGW51630.1| hypothetical protein HMPREF1022_01399 [Desulfovibrio sp.
6_1_46AFAA]
Length = 415
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYID 30
Y R ++A L +FS +VE ASIDEAY+D
Sbjct: 75 YSELSRAIMAALGDFSPLVEPASIDEAYLD 104
>gi|212555521|gb|ACJ27975.1| DNA-directed DNA polymerase [Shewanella piezotolerans WP3]
Length = 341
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y++ R++ AV +++++E S+DEAY+D+T+ H
Sbjct: 62 YKDVSRQIRAVFERYTDLIEPLSLDEAYLDVTESDH 97
>gi|419777789|ref|ZP_14303693.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK10]
gi|383187907|gb|EIC80349.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK10]
Length = 354
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|419783170|ref|ZP_14308962.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK610]
gi|383182596|gb|EIC75150.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK610]
Length = 335
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 74 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 106
>gi|402849345|ref|ZP_10897582.1| DNA polymerase IV [Rhodovulum sp. PH10]
gi|402500395|gb|EJW12070.1| DNA polymerase IV [Rhodovulum sp. PH10]
Length = 447
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y AGR V A++ E + +VE SIDEA++DLT
Sbjct: 95 YVKAGRAVRAMMGELTPLVEPLSIDEAFLDLT 126
>gi|319954887|ref|YP_004166154.1| DNA-directed DNA polymerase [Cellulophaga algicola DSM 14237]
gi|319423547|gb|ADV50656.1| DNA-directed DNA polymerase [Cellulophaga algicola DSM 14237]
Length = 421
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH 44
Y + VI +L FS VE SIDE+++DL+DV E ++ H
Sbjct: 78 YGEMSQRVINILKTFSARVEIYSIDESFLDLSDVPEEELEQYAH 121
>gi|412988027|emb|CCO19423.1| DNA polymerase eta [Bathycoccus prasinos]
Length = 741
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR+AG +V A L++ I ERASIDEAY+D+T
Sbjct: 133 YRDAGAKVAAELAKHGTI-ERASIDEAYLDVT 163
>gi|297625971|ref|YP_003687734.1| DNA polymerase IV [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921736|emb|CBL56294.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair (DNA
polymerase IV) [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 483
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDL 31
YR + R V+A+L E S +VE SIDEA++DL
Sbjct: 81 YRQSSRIVMALLGELSPLVEPLSIDEAFVDL 111
>gi|91792543|ref|YP_562194.1| DNA polymerase IV [Shewanella denitrificans OS217]
gi|123356988|sp|Q12Q05.1|DPO4_SHEDO RecName: Full=DNA polymerase IV; Short=Pol IV
gi|91714545|gb|ABE54471.1| DNA-directed DNA polymerase [Shewanella denitrificans OS217]
Length = 358
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y++ ++ +V + +++I+E S+DEAY+D+TD H
Sbjct: 79 YKSVSAQIRSVFARYTDIIEPLSLDEAYLDVTDSPH 114
>gi|71733882|ref|YP_275925.1| DNA polymerase IV [Pseudomonas syringae pv. phaseolicola 1448A]
gi|416018015|ref|ZP_11565016.1| DNA polymerase IV [Pseudomonas syringae pv. glycinea str. B076]
gi|416025780|ref|ZP_11569428.1| DNA polymerase IV [Pseudomonas syringae pv. glycinea str. race 4]
gi|123635454|sp|Q48FB2.1|DPO4_PSE14 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|71554435|gb|AAZ33646.1| DNA polymerase IV [Pseudomonas syringae pv. phaseolicola 1448A]
gi|298157279|gb|EFH98363.1| DNA polymerase IV [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320323065|gb|EFW79154.1| DNA polymerase IV [Pseudomonas syringae pv. glycinea str. B076]
gi|320329663|gb|EFW85652.1| DNA polymerase IV [Pseudomonas syringae pv. glycinea str. race 4]
Length = 353
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ + ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDAGH 116
>gi|397166941|ref|ZP_10490384.1| DNA polymerase IV [Enterobacter radicincitans DSM 16656]
gi|396091087|gb|EJI88654.1| DNA polymerase IV [Enterobacter radicincitans DSM 16656]
Length = 351
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A ++ + S ++ ++E S+DEAY+D+TD H
Sbjct: 79 YKEASNQIREIFSRYTTLIEPLSLDEAYLDVTDSPH 114
>gi|257487023|ref|ZP_05641064.1| DNA polymerase IV [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|422598682|ref|ZP_16672939.1| DNA polymerase IV [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|330988956|gb|EGH87059.1| DNA polymerase IV [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 353
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ + ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDAGH 116
>gi|372270345|ref|ZP_09506393.1| DNA polymerase IV [Marinobacterium stanieri S30]
Length = 363
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR ++ A+ F+ ++E SIDEAY+D++D
Sbjct: 91 YREVAEQIFAIYRRFTGLIEPVSIDEAYLDVSD 123
>gi|422679986|ref|ZP_16738259.1| DNA polymerase IV [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|331009333|gb|EGH89389.1| DNA polymerase IV [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 353
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ + ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDAGH 116
>gi|422599679|ref|ZP_16673814.1| DNA polymerase IV, partial [Pseudomonas syringae pv. mori str.
301020]
gi|330892612|gb|EGH25273.1| DNA polymerase IV [Pseudomonas syringae pv. mori str. 301020]
Length = 330
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERM-KSIGHIAASQLSNTF 54
Y+ A RE+ + ++++++E S+DEA++D++D H R+ + I ++QL T
Sbjct: 89 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDAGHFSGSATRIAQDIRRRVSNQLHITV 148
Query: 55 VVGFGPDN 62
G P+
Sbjct: 149 SAGVAPNK 156
>gi|223044002|ref|ZP_03614042.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|417906353|ref|ZP_12550143.1| DNA polymerase IV [Staphylococcus capitis VCU116]
gi|222442545|gb|EEE48650.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|341598009|gb|EGS40527.1| DNA polymerase IV [Staphylococcus capitis VCU116]
Length = 356
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN 52
YR ++++ + ++ IVE S+DEAY+D+T +V M AS+++N
Sbjct: 81 YREVSQQIMDIFRSYTEIVEPMSLDEAYLDITHLVRPDM------PASRIAN 126
>gi|194291215|ref|YP_002007122.1| DNA polymerase IV [Cupriavidus taiwanensis LMG 19424]
gi|193225050|emb|CAQ71061.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Cupriavidus taiwanensis LMG 19424]
Length = 359
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR R + A+ E++ +VE S+DEAY+D++ H
Sbjct: 90 YREVSRRIFAIYREYTALVEPLSLDEAYLDVSLCTH 125
>gi|419815660|ref|ZP_14340132.1| DNA polymerase IV, partial [Streptococcus sp. GMD2S]
gi|404465977|gb|EKA11342.1| DNA polymerase IV, partial [Streptococcus sp. GMD2S]
Length = 194
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 40 YKTVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 72
>gi|289628619|ref|ZP_06461573.1| DNA polymerase IV [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289651505|ref|ZP_06482848.1| DNA polymerase IV [Pseudomonas syringae pv. aesculi str. 2250]
gi|422583771|ref|ZP_16658891.1| DNA polymerase IV [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330868598|gb|EGH03307.1| DNA polymerase IV [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 353
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ + ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDAGH 116
>gi|422608608|ref|ZP_16680584.1| DNA polymerase IV [Pseudomonas syringae pv. mori str. 301020]
gi|330892226|gb|EGH24887.1| DNA polymerase IV [Pseudomonas syringae pv. mori str. 301020]
Length = 353
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ + ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDAGH 116
>gi|424066589|ref|ZP_17804053.1| DNA polymerase IV [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424071243|ref|ZP_17808669.1| DNA polymerase IV [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407999176|gb|EKG39563.1| DNA polymerase IV [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|408002188|gb|EKG42451.1| DNA polymerase IV [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 361
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ + ++++++E S+DEA++D++D H
Sbjct: 89 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDAGH 124
>gi|422397535|ref|ZP_16477290.1| DNA polymerase IV, partial [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330883175|gb|EGH17324.1| DNA polymerase IV [Pseudomonas syringae pv. glycinea str. race 4]
Length = 254
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ + ++++++E S+DEA++D++D H
Sbjct: 36 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDAGH 71
>gi|255068100|ref|ZP_05319955.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|340362974|ref|ZP_08685331.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|349610910|ref|ZP_08890230.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
gi|255047615|gb|EET43079.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|339886785|gb|EGQ76409.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|348615332|gb|EGY64854.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
Length = 352
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTHNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
>gi|440288953|ref|YP_007341718.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Enterobacteriaceae bacterium strain FGI 57]
gi|440048475|gb|AGB79533.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Enterobacteriaceae bacterium strain FGI 57]
Length = 351
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D++D VH
Sbjct: 79 YKEASEHIREIFSRYTSLIEPLSLDEAYLDVSDSVH 114
>gi|452852653|ref|YP_007494337.1| DNA polymerase IV [Desulfovibrio piezophilus]
gi|451896307|emb|CCH49186.1| DNA polymerase IV [Desulfovibrio piezophilus]
Length = 381
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y+ V+ VL EFS VE+AS+DEAY+D T
Sbjct: 70 YKEISHMVMGVLKEFSPTVEQASVDEAYLDGT 101
>gi|289674654|ref|ZP_06495544.1| DNA polymerase IV, partial [Pseudomonas syringae pv. syringae
FF5]
Length = 317
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ + ++++++E S+DEA++D++D H
Sbjct: 45 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDAGH 80
>gi|440720468|ref|ZP_20900886.1| DNA polymerase IV [Pseudomonas syringae BRIP34876]
gi|440726597|ref|ZP_20906849.1| DNA polymerase IV [Pseudomonas syringae BRIP34881]
gi|440365827|gb|ELQ02915.1| DNA polymerase IV [Pseudomonas syringae BRIP34881]
gi|440365993|gb|ELQ03080.1| DNA polymerase IV [Pseudomonas syringae BRIP34876]
Length = 353
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ + ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDAGH 116
>gi|308447175|ref|XP_003087353.1| hypothetical protein CRE_25044 [Caenorhabditis remanei]
gi|308257152|gb|EFP01105.1| hypothetical protein CRE_25044 [Caenorhabditis remanei]
Length = 636
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDL 31
YR+A R V+ V EF+ +VE SIDEA++D+
Sbjct: 92 YRDASRAVMRVFEEFTPLVEPLSIDEAFLDV 122
>gi|224826052|ref|ZP_03699155.1| DNA-directed DNA polymerase [Pseudogulbenkiania ferrooxidans 2002]
gi|224601689|gb|EEG07869.1| DNA-directed DNA polymerase [Pseudogulbenkiania ferrooxidans 2002]
Length = 359
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A ++++A+ +F+ ++E S+DEAY+D++ H
Sbjct: 83 YKTASQQILAIYQDFTELIEPLSLDEAYLDVSGRPH 118
>gi|374619528|ref|ZP_09692062.1| nucleotidyltransferase/DNA polymerase involved in DNA repair [gamma
proteobacterium HIMB55]
gi|374302755|gb|EHQ56939.1| nucleotidyltransferase/DNA polymerase involved in DNA repair [gamma
proteobacterium HIMB55]
Length = 391
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A + + A+ E++ I+E S+DEAY+D+T+
Sbjct: 89 YREASKAMRAIFEEYTEIIEPLSLDEAYLDVTE 121
>gi|408793588|ref|ZP_11205194.1| ImpB/MucB/SamB family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
gi|408462092|gb|EKJ85821.1| ImpB/MucB/SamB family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
Length = 358
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T + ++ +A I +EIR + +T CSAG+A NK
Sbjct: 103 DEAYLDVTSNKLQIPLASTIAKEIRKKIFDRTGLTCSAGVAQNK 146
>gi|417002085|ref|ZP_11941474.1| ImpB/MucB/SamB family protein [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479226|gb|EGC82322.1| ImpB/MucB/SamB family protein [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 344
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYI 29
YR REV A++ FS ++E+ S+DEAY+
Sbjct: 78 YREKSREVFAIVKTFSKVMEQVSVDEAYL 106
>gi|87122841|ref|ZP_01078712.1| DNA-damage-inducible protein P [Marinomonas sp. MED121]
gi|86161893|gb|EAQ63187.1| DNA-damage-inducible protein P [Marinomonas sp. MED121]
Length = 348
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A R++ A+ E++ +E S+DEAY+D+TD
Sbjct: 79 YRLASRQMHAIFQEYTLKIEPLSLDEAYLDVTDCTQ 114
>gi|390933370|ref|YP_006390875.1| DNA polymerase IV [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389568871|gb|AFK85276.1| DNA polymerase IV [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 379
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR +V +L ++IVE SIDEAY+D+TD+
Sbjct: 79 YREVSEKVFDILYSVTDIVEPLSIDEAYLDVTDI 112
>gi|333996674|ref|YP_004529286.1| DNA polymerase IV [Treponema primitia ZAS-2]
gi|333739854|gb|AEF85344.1| DNA polymerase IV [Treponema primitia ZAS-2]
Length = 396
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR EV+AV S+F+ V++ SIDEA++D+T
Sbjct: 80 YREKSDEVMAVFSDFTPDVKQISIDEAFLDIT 111
>gi|421729050|ref|ZP_16168200.1| putative UV protection and mutation protein [Klebsiella oxytoca
M5al]
gi|410370145|gb|EKP24876.1| putative UV protection and mutation protein [Klebsiella oxytoca
M5al]
Length = 421
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-VHERMKSIG-HIAASQLSNTFV--- 55
Y + R V+ +L E + V + SIDEA+++LT + E ++S G H+ ++ L T +
Sbjct: 77 YGDMSRRVMTILEELAPAVYQYSIDEAFVNLTGIHRSEELESFGRHVRSTLLQCTGLTVG 136
Query: 56 VGFGP 60
VG GP
Sbjct: 137 VGIGP 141
>gi|365969146|ref|YP_004950707.1| DNA polymerase IV [Enterobacter cloacae EcWSU1]
gi|365748059|gb|AEW72286.1| DNA polymerase IV [Enterobacter cloacae EcWSU1]
Length = 352
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D+TD +H
Sbjct: 79 YKEASLHIREIFSRYTSLIEPLSLDEAYLDVTDSLH 114
>gi|308809351|ref|XP_003081985.1| Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS)
[Ostreococcus tauri]
gi|116060452|emb|CAL55788.1| Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS)
[Ostreococcus tauri]
Length = 595
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR AG V +LS ++ERASIDEAY+DLT
Sbjct: 112 YRRAGAAVARILSR-GGVMERASIDEAYLDLT 142
>gi|89099009|ref|ZP_01171888.1| DNA polymerase IV [Bacillus sp. NRRL B-14911]
gi|89086139|gb|EAR65261.1| DNA polymerase IV [Bacillus sp. NRRL B-14911]
Length = 432
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A + +L ++S +VE SIDE Y+D+TD
Sbjct: 88 YRAASMGMFNILGQYSGLVEPVSIDEGYVDITD 120
>gi|314934060|ref|ZP_07841423.1| DNA polymerase IV [Staphylococcus caprae C87]
gi|313653171|gb|EFS16930.1| DNA polymerase IV [Staphylococcus caprae C87]
Length = 356
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSN 52
YR +++ + ++ IVE S+DEAY+D+T +V M AS+++N
Sbjct: 81 YREVSHQIMEIFRSYTEIVEPMSLDEAYLDITHLVRPDM------PASRIAN 126
>gi|218665203|ref|YP_002426170.1| umuC protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|218517416|gb|ACK78002.1| umuC protein [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 427
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQL 50
Y + ++ +LS FS I E SIDE ++DL+ +R+ +G A ++
Sbjct: 78 YADMSNRMMGILSTFSPIQEVYSIDECFLDLSGFAQDRLSQLGQAARQRV 127
>gi|261340938|ref|ZP_05968796.1| DNA polymerase IV [Enterobacter cancerogenus ATCC 35316]
gi|288316796|gb|EFC55734.1| DNA polymerase IV [Enterobacter cancerogenus ATCC 35316]
Length = 352
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D+TD +H
Sbjct: 79 YKEASAHIREIFSRYTSLIEPLSLDEAYLDVTDSLH 114
>gi|401402150|ref|XP_003881179.1| pc21g17280 protein, related [Neospora caninum Liverpool]
gi|325115591|emb|CBZ51146.1| pc21g17280 protein, related [Neospora caninum Liverpool]
Length = 598
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR A EV++++ E + VERASIDE Y+DL+
Sbjct: 187 YRLASDEVLSLIVEQYSSVERASIDEVYLDLS 218
>gi|308523777|gb|ADO33731.1| putative DNA polymerase IV 2 [Deinococcus ficus]
Length = 326
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR A + V EF+++VE S+DEAY+DLT
Sbjct: 48 YREASEIIQGVFHEFTDLVEPLSLDEAYLDLT 79
>gi|239905076|ref|YP_002951815.1| DNA polymerase IV [Desulfovibrio magneticus RS-1]
gi|239794940|dbj|BAH73929.1| DNA polymerase IV [Desulfovibrio magneticus RS-1]
Length = 394
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y R V+ L FS +VE ASIDEAY+D+T
Sbjct: 77 YSEVSRIVMETLGRFSPLVEPASIDEAYVDIT 108
>gi|402844336|ref|ZP_10892701.1| DNA polymerase IV [Klebsiella sp. OBRC7]
gi|402275015|gb|EJU24181.1| DNA polymerase IV [Klebsiella sp. OBRC7]
Length = 351
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D++D VH
Sbjct: 79 YKEASNHIREIFSRYTSLIEPLSLDEAYLDVSDSVH 114
>gi|423106788|ref|ZP_17094483.1| DNA polymerase IV [Klebsiella oxytoca 10-5243]
gi|376388914|gb|EHT01606.1| DNA polymerase IV [Klebsiella oxytoca 10-5243]
Length = 351
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D++D VH
Sbjct: 79 YKEASNHIREIFSRYTSLIEPLSLDEAYLDVSDSVH 114
>gi|375259142|ref|YP_005018312.1| DNA polymerase IV [Klebsiella oxytoca KCTC 1686]
gi|365908620|gb|AEX04073.1| DNA polymerase IV [Klebsiella oxytoca KCTC 1686]
Length = 351
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D++D VH
Sbjct: 79 YKEASNHIREIFSRYTSLIEPLSLDEAYLDVSDSVH 114
>gi|326481425|gb|EGE05435.1| sister chromatid cohesion protein [Trichophyton equinum CBS 127.97]
Length = 642
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 37/158 (23%)
Query: 1 YRNAGREVIAVL-------------------SEFSNIV--ERASIDEAYIDLTDVVH--- 36
YR R+++AV+ SE S++V E+A IDE ++DL+ +V
Sbjct: 135 YRAESRKILAVMKTTLLTWAEGVYEGCRGQFSEPSDMVRLEKAGIDEVFVDLSALVFGTL 194
Query: 37 -ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 95
R + + A ++S F P + + W G+ D E+ ED
Sbjct: 195 LHRYEILQQAATLEVSKDGHSAFLPRP------ETTALIW-GEDDELIDLDTGESEEDDP 247
Query: 96 E-----LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
E + + IV+ +R AV + ++ CS GIA NK+
Sbjct: 248 EWDDIVIQVGAEIVKFVRTAVWDQLKYTCSGGIARNKM 285
>gi|307180994|gb|EFN68768.1| DNA polymerase iota [Camponotus floridanus]
Length = 549
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L +F+ +VER D+ ++++ KS+ SQ + F
Sbjct: 59 YRLYSTKVFEILQQFTPLVERLGFDDYFLEI--------KSVEKQLKSQNDSEF--DMNN 108
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
+ DE+ +++ +++ +D + L I I IR + + CS
Sbjct: 109 LHTDEELKESD-----SKIFGPSDEECPCDCH--TRLMIGAKIAAGIRNRIYEELHLTCS 161
Query: 121 AGIAHNKV 128
AGIAHNK+
Sbjct: 162 AGIAHNKL 169
>gi|119476993|ref|ZP_01617274.1| DNA polymerase IV [marine gamma proteobacterium HTCC2143]
gi|119449800|gb|EAW31037.1| DNA polymerase IV [marine gamma proteobacterium HTCC2143]
Length = 388
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT--DVVH-----------ERMK-SIG-HI 45
Y+ A ++ + E+S +VE S+DEAYID+T D H +R+K S+G +
Sbjct: 106 YKLAASQMRTIFCEYSTLVEPLSLDEAYIDVTGSDACHGSATLIAEEIRQRVKESVGITL 165
Query: 46 AASQLSNTFVVGFGPDNNDEDA 67
+A N F+ G D N +
Sbjct: 166 SAGVAPNKFLAKIGSDWNKPNG 187
>gi|433463201|ref|ZP_20420761.1| DNA polymerase IV [Halobacillus sp. BAB-2008]
gi|432187847|gb|ELK45099.1| DNA polymerase IV [Halobacillus sp. BAB-2008]
Length = 415
Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A +E+ +LS+ + V+ SIDE Y+D+TD
Sbjct: 89 YRAASKEMFKILSDVTPTVQPVSIDEGYMDITD 121
>gi|326468815|gb|EGD92824.1| sister chromatid cohesion protein [Trichophyton tonsurans CBS
112818]
Length = 642
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 37/158 (23%)
Query: 1 YRNAGREVIAVL-------------------SEFSNIV--ERASIDEAYIDLTDVVH--- 36
YR R+++AV+ SE S++V E+A IDE ++DL+ +V
Sbjct: 135 YRAESRKILAVMKTTLLTWAEGVYEGCRGQFSEPSDMVRLEKAGIDEVFVDLSALVFGTL 194
Query: 37 -ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 95
R + + A ++S F P + + W G+ D E+ ED
Sbjct: 195 LHRYEILQQAATLEVSKDGHSAFLPRP------ETTALIW-GEDDELIDLDTGESEEDDP 247
Query: 96 E-----LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
E + + IV+ +R AV + ++ CS GIA NK+
Sbjct: 248 EWDDIVIQVGAEIVKFVRTAVWDQLKYTCSGGIARNKM 285
>gi|212213211|ref|YP_002304147.1| DNA polymerase IV [Coxiella burnetii CbuG_Q212]
gi|212218115|ref|YP_002304902.1| DNA polymerase IV [Coxiella burnetii CbuK_Q154]
gi|215918927|ref|NP_819324.2| DNA polymerase IV [Coxiella burnetii RSA 493]
gi|206583812|gb|AAO89838.2| DNA polymerase IV [Coxiella burnetii RSA 493]
gi|212011621|gb|ACJ19002.1| DNA polymerase IV [Coxiella burnetii CbuG_Q212]
gi|212012377|gb|ACJ19757.1| DNA polymerase IV [Coxiella burnetii CbuK_Q154]
Length = 372
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-VHE 37
YR G ++ + E++++VE S+DEAY+D++D +H+
Sbjct: 102 YRAIGHQIRGLFQEYTHLVEPLSLDEAYLDVSDCKIHQ 139
>gi|161831206|ref|YP_001596230.1| ImpB/MucB/SamB family protein [Coxiella burnetii RSA 331]
gi|164686019|ref|ZP_01946909.2| ImpB/MucB/SamB family protein [Coxiella burnetii 'MSU Goat Q177']
gi|165919789|ref|ZP_02219532.1| ImpB/MucB/SamB family protein [Coxiella burnetii Q321]
gi|161763073|gb|ABX78715.1| ImpB/MucB/SamB family protein [Coxiella burnetii RSA 331]
gi|164601562|gb|EAX32467.2| ImpB/MucB/SamB family protein [Coxiella burnetii 'MSU Goat Q177']
gi|165916872|gb|EDR35476.1| ImpB/MucB/SamB family protein [Coxiella burnetii Q321]
Length = 357
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-VHE 37
YR G ++ + E++++VE S+DEAY+D++D +H+
Sbjct: 87 YRAIGHQIRGLFQEYTHLVEPLSLDEAYLDVSDCKIHQ 124
>gi|421725212|ref|ZP_16164410.1| DNA polymerase IV [Klebsiella oxytoca M5al]
gi|410373999|gb|EKP28682.1| DNA polymerase IV [Klebsiella oxytoca M5al]
Length = 351
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D++D VH
Sbjct: 79 YKEASNHIREIFSRYTSLIEPLSLDEAYLDVSDSVH 114
>gi|237800205|ref|ZP_04588666.1| DNA polymerase IV, partial [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331023062|gb|EGI03119.1| DNA polymerase IV [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 220
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ + ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDAGH 116
>gi|404416614|ref|ZP_10998431.1| DNA polymerase IV [Staphylococcus arlettae CVD059]
gi|403491018|gb|EJY96546.1| DNA polymerase IV [Staphylococcus arlettae CVD059]
Length = 357
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 35
YR A + ++++ ++ IVE S+DEAY+D+T +V
Sbjct: 81 YRAASKIIMSIFKSYTEIVEPLSLDEAYLDITHLV 115
>gi|319941596|ref|ZP_08015921.1| DNA polymerase IV [Sutterella wadsworthensis 3_1_45B]
gi|319804898|gb|EFW01744.1| DNA polymerase IV [Sutterella wadsworthensis 3_1_45B]
Length = 372
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR E+ A+ ++++VE SIDEAY+D+TD
Sbjct: 90 YREVSAEIRAIFHRYTDLVEPISIDEAYLDVTD 122
>gi|317485314|ref|ZP_07944194.1| impB/mucB/samB family protein [Bilophila wadsworthia 3_1_6]
gi|316923440|gb|EFV44646.1| impB/mucB/samB family protein [Bilophila wadsworthia 3_1_6]
Length = 398
Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y R VI VL +S VE+AS+DEAY+D T
Sbjct: 79 YAEVSRTVIDVLRSYSPRVEKASVDEAYLDAT 110
>gi|440795136|gb|ELR16272.1| ImpB/MucB/SamB family protein [Acanthamoeba castellanii str. Neff]
Length = 590
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 21/114 (18%)
Query: 19 VERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVM----E 74
VE+ASID+ Y+D+T +V A+QL ++ ND D + + E
Sbjct: 133 VEKASIDDFYVDVTPLV-----------AAQLERGLLI------NDLDMPASQMASQSSE 175
Query: 75 WLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W G V S T +L I +R AV +K SAG+A NK+
Sbjct: 176 WPGAVEGPGLVSAHILTAQEVQLREGARIAASLREAVHTKCGLRVSAGVAQNKL 229
>gi|384084551|ref|ZP_09995726.1| umuC protein [Acidithiobacillus thiooxidans ATCC 19377]
Length = 427
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQL 50
Y + + ++ +LS+FS I E SIDE ++DL E+ + IG A ++
Sbjct: 78 YADMSQRMMTILSDFSPIQEVYSIDECFLDLHGFAPEQCRKIGQTARQRI 127
>gi|423127543|ref|ZP_17115222.1| DNA polymerase IV [Klebsiella oxytoca 10-5250]
gi|376394582|gb|EHT07232.1| DNA polymerase IV [Klebsiella oxytoca 10-5250]
Length = 351
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D++D VH
Sbjct: 79 YKEASNHIREIFSRYTSLIEPLSLDEAYLDVSDSVH 114
>gi|423112669|ref|ZP_17100360.1| DNA polymerase IV [Klebsiella oxytoca 10-5245]
gi|376390163|gb|EHT02849.1| DNA polymerase IV [Klebsiella oxytoca 10-5245]
Length = 351
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D++D VH
Sbjct: 79 YKEASNHIREIFSRYTSLIEPLSLDEAYLDVSDSVH 114
>gi|444352988|ref|YP_007389132.1| DNA polymerase IV (EC 2.7.7.7) [Enterobacter aerogenes EA1509E]
gi|443903818|emb|CCG31592.1| DNA polymerase IV (EC 2.7.7.7) [Enterobacter aerogenes EA1509E]
Length = 356
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D++D VH
Sbjct: 84 YKEASNHIREIFSRYTSLIEPLSLDEAYLDVSDSVH 119
>gi|389867144|ref|YP_006369385.1| DNA polymerase IV [Modestobacter marinus]
gi|388489348|emb|CCH90926.1| DNA polymerase IV [Modestobacter marinus]
Length = 441
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHE 37
YR V+A+L E S +VE SIDEAY+DL H+
Sbjct: 75 YRRTSDVVMALLRELSPLVEPVSIDEAYVDLAAGDHD 111
>gi|271501762|ref|YP_003334788.1| DNA-directed DNA polymerase [Dickeya dadantii Ech586]
gi|270345317|gb|ACZ78082.1| DNA-directed DNA polymerase [Dickeya dadantii Ech586]
Length = 352
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ ++ A+ S +++++E S+DEAY+D+TD H
Sbjct: 79 YKATSLQIRAIFSRYTSLIEPLSLDEAYLDVTDSPH 114
>gi|146310425|ref|YP_001175499.1| DNA polymerase IV [Enterobacter sp. 638]
gi|189027666|sp|A4W6W8.1|DPO4_ENT38 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|145317301|gb|ABP59448.1| DNA-directed DNA polymerase [Enterobacter sp. 638]
Length = 352
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D+TD +H
Sbjct: 79 YKEASVRIQEIFSRYTSLIEPLSLDEAYLDVTDSLH 114
>gi|397656114|ref|YP_006496816.1| DNA polymerase IV [Klebsiella oxytoca E718]
gi|394344742|gb|AFN30863.1| DNA polymerase IV [Klebsiella oxytoca E718]
Length = 351
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D++D VH
Sbjct: 79 YKEASNHIREIFSRYTSLIEPLSLDEAYLDVSDSVH 114
>gi|359455015|ref|ZP_09244268.1| DNA polymerase IV [Pseudoalteromonas sp. BSi20495]
gi|414070783|ref|ZP_11406763.1| DNA polymerase IV [Pseudoalteromonas sp. Bsw20308]
gi|358047981|dbj|GAA80517.1| DNA polymerase IV [Pseudoalteromonas sp. BSi20495]
gi|410806800|gb|EKS12786.1| DNA polymerase IV [Pseudoalteromonas sp. Bsw20308]
Length = 352
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ A ++ V + ++N++E S+DEAY+D+TD
Sbjct: 80 YKEASNQIREVFNRYTNLIEPLSLDEAYLDVTD 112
>gi|336248869|ref|YP_004592579.1| DNA polymerase IV [Enterobacter aerogenes KCTC 2190]
gi|334734925|gb|AEG97300.1| DNA polymerase IV [Enterobacter aerogenes KCTC 2190]
Length = 351
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D++D VH
Sbjct: 79 YKEASNHIREIFSRYTSLIEPLSLDEAYLDVSDSVH 114
>gi|170744712|ref|YP_001773367.1| DNA polymerase IV [Methylobacterium sp. 4-46]
gi|168198986|gb|ACA20933.1| DNA-directed DNA polymerase [Methylobacterium sp. 4-46]
Length = 435
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDL--TDVVHERMKSI-----GHIAASQLSNT 53
Y GREV A++ + +VE SIDEA++DL T+ +H ++ +QL T
Sbjct: 121 YARVGREVRAMMRALTPLVEPVSIDEAFLDLSGTERLHGASPAVTLARFARAVEAQLGIT 180
Query: 54 FVVGFGPD 61
+G P+
Sbjct: 181 VSIGLAPN 188
>gi|423118815|ref|ZP_17106499.1| DNA polymerase IV [Klebsiella oxytoca 10-5246]
gi|376400559|gb|EHT13171.1| DNA polymerase IV [Klebsiella oxytoca 10-5246]
Length = 351
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D++D VH
Sbjct: 79 YKEASSHIREIFSRYTSLIEPLSLDEAYLDVSDSVH 114
>gi|425897894|ref|ZP_18874485.1| DNA polymerase IV [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397891834|gb|EJL08312.1| DNA polymerase IV [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 354
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A +E+ + ++++++E S+DEAY+D++D
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSD 113
>gi|121713084|ref|XP_001274153.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
clavatus NRRL 1]
gi|119402306|gb|EAW12727.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
clavatus NRRL 1]
Length = 674
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 19 VERASIDEAYIDLTDVVH----ERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVME 74
+E+ASIDE +IDL+ +V+ +R + A SQ + F P +E
Sbjct: 183 LEKASIDEVFIDLSPLVYGVLLQRYPELR--AGSQDDDRFTPLPRPPTT--------ALE 232
Query: 75 WLGQ-VYSDTDTSLME-NTEDFQELA--IAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128
W + D D + E + D+ ++A I IV +R V K ++ CS G+A NK+
Sbjct: 233 WNPEDCLIDLDENETEVDDPDWDDIAMLIGSEIVRSVRKFVWDKLKYTCSGGVARNKM 290
>gi|386714738|ref|YP_006181061.1| DNA polymerase IV [Halobacillus halophilus DSM 2266]
gi|384074294|emb|CCG45787.1| DNA polymerase IV [Halobacillus halophilus DSM 2266]
Length = 414
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A +E+ +L++ +++V+ SIDE Y+D+T+
Sbjct: 88 YRTASKEMFKILADVTSLVQPVSIDEGYMDITN 120
>gi|358063532|ref|ZP_09150143.1| hypothetical protein HMPREF9473_02205 [Clostridium hathewayi
WAL-18680]
gi|356698325|gb|EHI59874.1| hypothetical protein HMPREF9473_02205 [Clostridium hathewayi
WAL-18680]
Length = 414
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH---ERM---KSIGHIAASQLSNTF 54
Y R++I +L +++ +E+ SIDEA++D+T+ +H E M + I +L T
Sbjct: 90 YIENSRKLIHLLEDYTPDIEKFSIDEAFLDMTETIHLFGEPMDVARQIRERVKKELGFTV 149
Query: 55 VVGFGPDN 62
VG P+
Sbjct: 150 NVGVAPNK 157
>gi|260821886|ref|XP_002606334.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
gi|229291675|gb|EEN62344.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
Length = 493
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 28/136 (20%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH------ERMKSI-GHI---AASQL 50
Y R+V VL ++ S+DEAY+DLTD + E M++ H+ + +
Sbjct: 159 YCAVSRQVRDVLGQYDPNFAPMSLDEAYMDLTDYLKLRESLPEEMRTFYAHVEGCVSKKD 218
Query: 51 SNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAA 110
S+T +N+DED LG+ + T+ + E + F A +V EIR
Sbjct: 219 SST-------ENHDEDGM-------LGE--TQTNVKMSETSVVFG--CDAEEVVREIRFR 260
Query: 111 VLSKTQFHCSAGIAHN 126
+ +T+ SAGIA N
Sbjct: 261 IEQRTRLTASAGIAPN 276
>gi|399006155|ref|ZP_10708683.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM17]
gi|398122614|gb|EJM12200.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Pseudomonas sp. GM17]
Length = 353
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A +E+ + ++++++E S+DEAY+D++D
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSD 113
>gi|308272355|emb|CBX28961.1| hypothetical protein N47_B21070 [uncultured Desulfobacterium sp.]
Length = 388
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y + ++A+L FS +VE SIDEAY+D+T
Sbjct: 77 YSEISKRIMALLETFSPLVEPVSIDEAYVDIT 108
>gi|218288790|ref|ZP_03493053.1| DNA-directed DNA polymerase [Alicyclobacillus acidocaldarius LAA1]
gi|218241148|gb|EED08324.1| DNA-directed DNA polymerase [Alicyclobacillus acidocaldarius LAA1]
Length = 409
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR R+V AV+ EF+ VE SIDE Y D+T V
Sbjct: 73 YRAYARKVFAVVREFTPDVEIVSIDECYADVTHV 106
>gi|392533163|ref|ZP_10280300.1| DNA polymerase IV [Pseudoalteromonas arctica A 37-1-2]
Length = 342
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ A ++ V S ++++VE S+DEAY+D+TD
Sbjct: 70 YKEASNQIREVFSRYTDLVEPLSLDEAYLDVTD 102
>gi|389683074|ref|ZP_10174406.1| DNA polymerase IV [Pseudomonas chlororaphis O6]
gi|388552587|gb|EIM15848.1| DNA polymerase IV [Pseudomonas chlororaphis O6]
Length = 354
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A +E+ + ++++++E S+DEAY+D++D
Sbjct: 81 YREASKEIHTIFRDYTDLIEPLSLDEAYLDVSD 113
>gi|404401172|ref|ZP_10992756.1| DNA polymerase IV [Pseudomonas fuscovaginae UPB0736]
Length = 354
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ +E+ A+ +++ ++E S+DEAY+D++D H
Sbjct: 81 YKEVSKEIQAIFRDYTELIEPLSLDEAYLDVSDSPH 116
>gi|401881991|gb|EJT46266.1| hypothetical protein A1Q1_05095 [Trichosporon asahii var. asahii
CBS 2479]
gi|406700978|gb|EKD04137.1| hypothetical protein A1Q2_01612 [Trichosporon asahii var. asahii
CBS 8904]
Length = 598
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD-VVHERMKSIGHIAASQLSNTFVVGFG 59
YR +++AV E + E ASIDEA++DLT V+ E +K +++A V
Sbjct: 120 YRRESLKILAVFREMAPKAELASIDEAFLDLTPMVLDELLKRFPYLSA-------VPEDA 172
Query: 60 PDNNDEDARKAGVMEW 75
PD D ++W
Sbjct: 173 PDGLDSPLPPPPPVDW 188
>gi|424812517|ref|ZP_18237757.1| nucleotidyltransferase/DNA polymerase involved in DNA repair,
partial [Candidatus Nanosalinarum sp. J07AB56]
gi|339756739|gb|EGQ40322.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Nanosalinarum sp. J07AB56]
Length = 353
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD-VVHERMKSIGHIAASQLSNTFVVGFG 59
Y++ EV A+L + ++ V SIDEAY+D+TD +++ A T GF
Sbjct: 18 YKSVASEVKAILHDCADPVREVSIDEAYLDITDRTAWDQLDGATTAAGPGTHRTVAEGFA 77
Query: 60 PDNNDEDARKAGVMEWLGQVYSDTDTSLMENTED 93
+ +R+AGV +G V D T+ + + D
Sbjct: 78 RHIKERISREAGVPASVG-VAPDMSTAKIASDHD 110
>gi|313889773|ref|ZP_07823415.1| DNA polymerase IV [Streptococcus pseudoporcinus SPIN 20026]
gi|416852396|ref|ZP_11909541.1| DNA polymerase IV [Streptococcus pseudoporcinus LQ 940-04]
gi|313121818|gb|EFR44915.1| DNA polymerase IV [Streptococcus pseudoporcinus SPIN 20026]
gi|356739885|gb|EHI65117.1| DNA polymerase IV [Streptococcus pseudoporcinus LQ 940-04]
Length = 364
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G E+ + ++++VE SIDEAY+D+T+
Sbjct: 92 YREVGLEIRRIFKRYTDLVEPMSIDEAYLDVTE 124
>gi|307132282|ref|YP_003884298.1| DNA polymerase IV [Dickeya dadantii 3937]
gi|306529811|gb|ADM99741.1| DNA polymerase IV [Dickeya dadantii 3937]
Length = 352
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A ++ + S +++++E S+DEAY+D+TD H
Sbjct: 79 YKAASYQIRQIFSRYTSLIEPLSLDEAYLDVTDSPH 114
>gi|150396146|ref|YP_001326613.1| DNA polymerase IV [Sinorhizobium medicae WSM419]
gi|150027661|gb|ABR59778.1| DNA-directed DNA polymerase [Sinorhizobium medicae WSM419]
Length = 430
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y GREV A++SE + +V+ SIDEA++DL+
Sbjct: 118 YVRVGREVRAMMSELTPLVQPLSIDEAFLDLS 149
>gi|359440696|ref|ZP_09230609.1| DNA polymerase IV [Pseudoalteromonas sp. BSi20429]
gi|358037402|dbj|GAA66858.1| DNA polymerase IV [Pseudoalteromonas sp. BSi20429]
Length = 342
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ A ++ V S ++++VE S+DEAY+D+TD
Sbjct: 70 YKEASNQIREVFSRYTDLVEPLSLDEAYLDVTD 102
>gi|228941308|ref|ZP_04103861.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228974240|ref|ZP_04134810.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228980831|ref|ZP_04141136.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis Bt407]
gi|384188217|ref|YP_005574113.1| DNA polymerase IV [Bacillus thuringiensis serovar chinensis CT-43]
gi|410676535|ref|YP_006928906.1| DNA polymerase IV [Bacillus thuringiensis Bt407]
gi|452200607|ref|YP_007480688.1| DNA polymerase IV [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
gi|228779000|gb|EEM27262.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis Bt407]
gi|228785580|gb|EEM33589.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228818467|gb|EEM64539.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326941926|gb|AEA17822.1| DNA polymerase IV [Bacillus thuringiensis serovar chinensis CT-43]
gi|409175664|gb|AFV19969.1| DNA polymerase IV [Bacillus thuringiensis Bt407]
gi|452106000|gb|AGG02940.1| DNA polymerase IV [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
Length = 412
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 88 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 120
>gi|19568867|gb|AAL91945.1|AF483082_1 DNA polymerase DinB [Escherichia coli]
Length = 295
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++ +E S+DEAY+D+TD VH
Sbjct: 32 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 67
>gi|320537975|ref|ZP_08037881.1| putative DNA polymerase IV [Treponema phagedenis F0421]
gi|320145181|gb|EFW36891.1| putative DNA polymerase IV [Treponema phagedenis F0421]
Length = 395
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 20/77 (25%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
Y + V+A+L EFS V + S+DEA++D+T ER+ FGP
Sbjct: 81 YHEVSKAVMAILREFSPAVHQISVDEAFLDMTGT--ERL------------------FGP 120
Query: 61 DNNDEDARKAGVMEWLG 77
N K V E G
Sbjct: 121 AENSGKQLKKAVKEKTG 137
>gi|221483465|gb|EEE21784.1| DNA polymerase eta, putative [Toxoplasma gondii GT1]
Length = 1091
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 35
YR A EV++++ E VERASIDE +IDL++ V
Sbjct: 95 YRLASDEVLSIIVEQYPCVERASIDEVFIDLSNQV 129
>gi|415885417|ref|ZP_11547345.1| DNA polymerase IV [Bacillus methanolicus MGA3]
gi|387591086|gb|EIJ83405.1| DNA polymerase IV [Bacillus methanolicus MGA3]
Length = 427
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR ++ +L ++S++VE SIDE Y+D+TD
Sbjct: 88 YRAVSIKIFEILRQYSDLVEPVSIDEGYMDITD 120
>gi|152976551|ref|YP_001376068.1| DNA polymerase IV [Bacillus cytotoxicus NVH 391-98]
gi|152025303|gb|ABS23073.1| DNA-directed DNA polymerase [Bacillus cytotoxicus NVH 391-98]
Length = 412
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR A ++ +LS F+ ++ SIDE Y+D+TD E K I ++L
Sbjct: 88 YREASFQMFQILSRFTEKIQPVSIDEGYLDITDCYALGTPIEIAKMIQQTLVTELQLPCS 147
Query: 56 VGFGPD 61
+G P+
Sbjct: 148 IGIAPN 153
>gi|424835122|ref|ZP_18259792.1| DNA polymerase IV [Clostridium sporogenes PA 3679]
gi|365978249|gb|EHN14341.1| DNA polymerase IV [Clostridium sporogenes PA 3679]
Length = 349
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI 45
Y+ + +L + + IVE SIDEAY+D++ + E +K HI
Sbjct: 79 YKEVSNNIFKILFQITPIVEPVSIDEAYLDISHIKEEPIKVAKHI 123
>gi|346314439|ref|ZP_08855960.1| hypothetical protein HMPREF9022_01617 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906797|gb|EGX76521.1| hypothetical protein HMPREF9022_01617 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 393
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 42
Y L FS+++E ASIDE Y+D+TDV+ + + +
Sbjct: 80 YEELSNRFFKYLRRFSSLIEPASIDECYMDVTDVIKDYKRPL 121
>gi|415843600|ref|ZP_11523476.1| DNA polymerase IV [Shigella sonnei 53G]
gi|425113565|ref|ZP_18515409.1| DNA polymerase IV [Escherichia coli 8.0566]
gi|323169562|gb|EFZ55234.1| DNA polymerase IV [Shigella sonnei 53G]
gi|408573520|gb|EKK49356.1| DNA polymerase IV [Escherichia coli 8.0566]
Length = 312
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++ +E S+DEAY+D+TD VH
Sbjct: 40 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 75
>gi|319782620|ref|YP_004142096.1| DNA-directed DNA polymerase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317168508|gb|ADV12046.1| DNA-directed DNA polymerase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 415
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ G I VL +F+ +VER SIDEA+ D+ H
Sbjct: 77 YQRLGDAAIKVLDDFTPVVERISIDEAFADVAGCTH 112
>gi|300991266|ref|ZP_07179526.1| DNA polymerase IV, partial [Escherichia coli MS 200-1]
gi|300305583|gb|EFJ60103.1| DNA polymerase IV [Escherichia coli MS 200-1]
Length = 320
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++ +E S+DEAY+D+TD VH
Sbjct: 48 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 83
>gi|146317857|ref|YP_001197569.1| DNA polymerase IV [Streptococcus suis 05ZYH33]
gi|145688663|gb|ABP89169.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 05ZYH33]
Length = 337
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ GR+V + ++++VE SIDEAY+D+T+
Sbjct: 74 YQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE 106
>gi|389855914|ref|YP_006358157.1| DNA polymerase IV [Streptococcus suis ST1]
gi|353739632|gb|AER20639.1| DNA polymerase IV [Streptococcus suis ST1]
Length = 355
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ GR+V + ++++VE SIDEAY+D+T+
Sbjct: 92 YQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE 124
>gi|417621489|ref|ZP_12271819.1| DNA polymerase IV [Escherichia coli STEC_H.1.8]
gi|419373694|ref|ZP_13914754.1| impB/mucB/samB family protein [Escherichia coli DEC14B]
gi|345386937|gb|EGX16769.1| DNA polymerase IV [Escherichia coli STEC_H.1.8]
gi|378227113|gb|EHX87289.1| impB/mucB/samB family protein [Escherichia coli DEC14B]
Length = 312
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++ +E S+DEAY+D+TD VH
Sbjct: 40 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 75
>gi|237839201|ref|XP_002368898.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
gi|211966562|gb|EEB01758.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
Length = 1091
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 35
YR A EV++++ E VERASIDE +IDL++ V
Sbjct: 95 YRLASDEVLSIIVEQYPCVERASIDEVFIDLSNQV 129
>gi|146320049|ref|YP_001199760.1| DNA polymerase IV [Streptococcus suis 98HAH33]
gi|253751099|ref|YP_003024240.1| DNA polymerase IV [Streptococcus suis SC84]
gi|253753000|ref|YP_003026140.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|253754823|ref|YP_003027963.1| DNA polymerase IV [Streptococcus suis BM407]
gi|386577190|ref|YP_006073595.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|386581236|ref|YP_006077640.1| DNA polymerase IV [Streptococcus suis SS12]
gi|386587467|ref|YP_006083868.1| DNA polymerase IV [Streptococcus suis A7]
gi|403060877|ref|YP_006649093.1| DNA polymerase IV [Streptococcus suis S735]
gi|189044615|sp|A4VZ21.1|DPO4_STRS2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|145690855|gb|ABP91360.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 98HAH33]
gi|251815388|emb|CAZ50961.1| DNA polymerase IV [Streptococcus suis SC84]
gi|251817287|emb|CAZ55017.1| DNA polymerase IV [Streptococcus suis BM407]
gi|251819245|emb|CAR44505.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|292557652|gb|ADE30653.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|353733382|gb|AER14392.1| DNA polymerase IV [Streptococcus suis SS12]
gi|354984628|gb|AER43526.1| DNA polymerase IV [Streptococcus suis A7]
gi|402808203|gb|AFQ99694.1| DNA polymerase IV [Streptococcus suis S735]
Length = 355
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ GR+V + ++++VE SIDEAY+D+T+
Sbjct: 92 YQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE 124
>gi|423561378|ref|ZP_17537654.1| DNA polymerase IV [Bacillus cereus MSX-A1]
gi|401201635|gb|EJR08500.1| DNA polymerase IV [Bacillus cereus MSX-A1]
Length = 412
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 88 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 120
>gi|419874079|ref|ZP_14396035.1| DNA polymerase IV, partial [Escherichia coli O111:H11 str.
CVM9534]
gi|388351588|gb|EIL16800.1| DNA polymerase IV, partial [Escherichia coli O111:H11 str.
CVM9534]
Length = 293
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++ +E S+DEAY+D+TD VH
Sbjct: 21 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 56
>gi|386579169|ref|YP_006075574.1| DNA polymerase IV [Streptococcus suis JS14]
gi|319757361|gb|ADV69303.1| DNA polymerase IV [Streptococcus suis JS14]
Length = 355
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ GR+V + ++++VE SIDEAY+D+T+
Sbjct: 92 YQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE 124
>gi|313897314|ref|ZP_07830857.1| DNA polymerase IV [Clostridium sp. HGF2]
gi|373121274|ref|ZP_09535142.1| hypothetical protein HMPREF0982_00071 [Erysipelotrichaceae
bacterium 21_3]
gi|422327286|ref|ZP_16408313.1| hypothetical protein HMPREF0981_01633 [Erysipelotrichaceae
bacterium 6_1_45]
gi|312957684|gb|EFR39309.1| DNA polymerase IV [Clostridium sp. HGF2]
gi|371663980|gb|EHO29164.1| hypothetical protein HMPREF0981_01633 [Erysipelotrichaceae
bacterium 6_1_45]
gi|371665292|gb|EHO30457.1| hypothetical protein HMPREF0982_00071 [Erysipelotrichaceae
bacterium 21_3]
Length = 393
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSI 42
Y L FS+++E ASIDE Y+D+TDV+ + + +
Sbjct: 80 YEELSNRFFKYLRRFSSLIEPASIDECYMDVTDVIKDYKRPL 121
>gi|306828886|ref|ZP_07462078.1| DNA-directed DNA polymerase IV [Streptococcus mitis ATCC 6249]
gi|304429064|gb|EFM32152.1| DNA-directed DNA polymerase IV [Streptococcus mitis ATCC 6249]
Length = 353
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKAVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|228954432|ref|ZP_04116457.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|423503165|ref|ZP_17479757.1| DNA polymerase IV [Bacillus cereus HD73]
gi|449091105|ref|YP_007423546.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar kurstaki str. HD73]
gi|228805089|gb|EEM51683.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|402459386|gb|EJV91123.1| DNA polymerase IV [Bacillus cereus HD73]
gi|449024862|gb|AGE80025.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 412
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 88 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 120
>gi|218899309|ref|YP_002447720.1| DNA polymerase IV [Bacillus cereus G9842]
gi|218542397|gb|ACK94791.1| putative DNA-damage-inducible protein P [Bacillus cereus G9842]
Length = 412
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 88 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 120
>gi|139439740|ref|ZP_01773131.1| Hypothetical protein COLAER_02162 [Collinsella aerofaciens ATCC
25986]
gi|133774890|gb|EBA38710.1| putative DNA polymerase IV [Collinsella aerofaciens ATCC 25986]
Length = 417
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR +V+A+L++ + VER SIDEA+ID+T
Sbjct: 101 YREVSAQVMAILADETPRVERVSIDEAFIDIT 132
>gi|28140804|gb|AAO26328.1| DNA-damage-inducible-like protein [Paramecium aurelia]
Length = 326
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++ +E S+DEAY+D+TD VH
Sbjct: 52 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 87
>gi|414157895|ref|ZP_11414189.1| DNA polymerase IV [Streptococcus sp. F0441]
gi|410870440|gb|EKS18397.1| DNA polymerase IV [Streptococcus sp. F0441]
Length = 353
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKAVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|423385650|ref|ZP_17362906.1| DNA polymerase IV [Bacillus cereus BAG1X1-2]
gi|423527994|ref|ZP_17504439.1| DNA polymerase IV [Bacillus cereus HuB1-1]
gi|401635706|gb|EJS53461.1| DNA polymerase IV [Bacillus cereus BAG1X1-2]
gi|402451657|gb|EJV83476.1| DNA polymerase IV [Bacillus cereus HuB1-1]
Length = 412
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 88 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 120
>gi|379058736|ref|ZP_09849262.1| DNA repair nucleotidyltransferase/DNA polymerase [Serinicoccus
profundi MCCC 1A05965]
Length = 478
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR + V+ +L E S +VE+ S+DEAY+DLT
Sbjct: 84 YRASSEVVMGLLRERSPLVEQVSVDEAYVDLT 115
>gi|228909980|ref|ZP_04073801.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis IBL 200]
gi|423426282|ref|ZP_17403313.1| DNA polymerase IV [Bacillus cereus BAG3X2-2]
gi|423437600|ref|ZP_17414581.1| DNA polymerase IV [Bacillus cereus BAG4X12-1]
gi|228849815|gb|EEM94648.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis IBL 200]
gi|401111029|gb|EJQ18928.1| DNA polymerase IV [Bacillus cereus BAG3X2-2]
gi|401120755|gb|EJQ28551.1| DNA polymerase IV [Bacillus cereus BAG4X12-1]
Length = 412
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 88 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 120
>gi|228902658|ref|ZP_04066808.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis IBL 4222]
gi|228967188|ref|ZP_04128224.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar sotto str. T04001]
gi|402564442|ref|YP_006607166.1| DNA polymerase IV [Bacillus thuringiensis HD-771]
gi|423358814|ref|ZP_17336317.1| DNA polymerase IV [Bacillus cereus VD022]
gi|434377254|ref|YP_006611898.1| DNA polymerase IV [Bacillus thuringiensis HD-789]
gi|228792557|gb|EEM40123.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228856973|gb|EEN01483.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus thuringiensis IBL 4222]
gi|401084686|gb|EJP92932.1| DNA polymerase IV [Bacillus cereus VD022]
gi|401793094|gb|AFQ19133.1| DNA polymerase IV [Bacillus thuringiensis HD-771]
gi|401875811|gb|AFQ27978.1| DNA polymerase IV [Bacillus thuringiensis HD-789]
Length = 412
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 88 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 120
>gi|221507935|gb|EEE33522.1| DNA polymerase iota, putative [Toxoplasma gondii VEG]
Length = 996
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 35
YR A EV++++ E VERASIDE +IDL++ V
Sbjct: 95 YRLASDEVLSIIVEQYPCVERASIDEVFIDLSNQV 129
>gi|111656760|ref|ZP_01407638.1| hypothetical protein SpneT_02001951 [Streptococcus pneumoniae
TIGR4]
Length = 277
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y++ G ++ A+ +++++E SIDEAY+D+T+
Sbjct: 16 YKSVGLQIRAIFKRYTDLIEPMSIDEAYLDVTE 48
>gi|41057948|gb|AAR98931.1| SOS inducible DNA polymerase, partial [Shigella boydii]
Length = 324
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++ +E S+DEAY+D+TD VH
Sbjct: 61 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 96
>gi|75761968|ref|ZP_00741887.1| DNA polymerase IV [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74490548|gb|EAO53845.1| DNA polymerase IV [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 415
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 91 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 123
>gi|19568863|gb|AAL91943.1|AF483080_1 DNA polymerase DinB [Escherichia coli]
Length = 241
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++ +E S+DEAY+D+TD VH
Sbjct: 25 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 60
>gi|19568907|gb|AAL91965.1|AF483102_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++ +E S+DEAY+D+TD VH
Sbjct: 73 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 108
>gi|410089222|ref|ZP_11285848.1| DNA polymerase IV [Pseudomonas viridiflava UASWS0038]
gi|409763509|gb|EKN48469.1| DNA polymerase IV [Pseudomonas viridiflava UASWS0038]
Length = 353
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A +E+ + ++++++E S+DEA++D++D H
Sbjct: 81 YKEASKEIQTIFRDYTDLIEPLSLDEAFLDVSDASH 116
>gi|386585380|ref|YP_006081782.1| DNA polymerase IV [Streptococcus suis D12]
gi|353737526|gb|AER18534.1| DNA polymerase IV [Streptococcus suis D12]
Length = 355
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ GR+V + ++++VE SIDEAY+D+T+
Sbjct: 92 YQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE 124
>gi|229081405|ref|ZP_04213907.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock4-2]
gi|228701895|gb|EEL54379.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus Rock4-2]
Length = 412
Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 88 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 120
>gi|425107620|ref|ZP_18509892.1| DNA polymerase IV [Escherichia coli 6.0172]
gi|408561085|gb|EKK37328.1| DNA polymerase IV [Escherichia coli 6.0172]
Length = 312
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++ +E S+DEAY+D+TD VH
Sbjct: 40 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 75
>gi|417091376|ref|ZP_11956303.1| DNA polymerase IV [Streptococcus suis R61]
gi|353533248|gb|EHC02913.1| DNA polymerase IV [Streptococcus suis R61]
Length = 364
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ GR+V + ++++VE SIDEAY+D+T+
Sbjct: 92 YQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE 124
>gi|422373049|ref|ZP_16453380.1| DNA polymerase IV [Escherichia coli MS 60-1]
gi|324015566|gb|EGB84785.1| DNA polymerase IV [Escherichia coli MS 60-1]
Length = 351
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++ +E S+DEAY+D+TD VH
Sbjct: 79 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
>gi|425141743|ref|ZP_18542062.1| DNA polymerase IV [Escherichia coli 10.0869]
gi|408605090|gb|EKK78624.1| DNA polymerase IV [Escherichia coli 10.0869]
Length = 312
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++ +E S+DEAY+D+TD VH
Sbjct: 40 YKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 75
>gi|293364248|ref|ZP_06610974.1| DNA-directed DNA polymerase IV [Streptococcus oralis ATCC 35037]
gi|307702520|ref|ZP_07639474.1| impB/mucB/samB family protein [Streptococcus oralis ATCC 35037]
gi|291317094|gb|EFE57521.1| DNA-directed DNA polymerase IV [Streptococcus oralis ATCC 35037]
gi|307623932|gb|EFO02915.1| impB/mucB/samB family protein [Streptococcus oralis ATCC 35037]
Length = 353
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ G E+ A+ +++++E SIDEAY+D+T+
Sbjct: 92 YKAVGLEIRAIFKRYTDLIEPMSIDEAYLDVTE 124
>gi|229180426|ref|ZP_04307769.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus 172560W]
gi|228603173|gb|EEK60651.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacillus cereus 172560W]
Length = 412
Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ VLS F+ ++ SIDE Y+D+TD
Sbjct: 88 YREASFQMFQVLSRFTEKIQPVSIDEGYLDITD 120
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,867,306,415
Number of Sequences: 23463169
Number of extensions: 69486844
Number of successful extensions: 179136
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 232
Number of HSP's that attempted gapping in prelim test: 176653
Number of HSP's gapped (non-prelim): 2300
length of query: 129
length of database: 8,064,228,071
effective HSP length: 95
effective length of query: 34
effective length of database: 10,130,194,312
effective search space: 344426606608
effective search space used: 344426606608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)