BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16216
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JJN0|POLH_MOUSE DNA polymerase eta OS=Mus musculus GN=Polh PE=1 SV=1
Length = 694
Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats.
Identities = 62/136 (45%), Positives = 86/136 (63%), Gaps = 15/136 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAYIDLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSYFA-VIERASIDEAYIDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNND----EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVL 112
GP + E RK G+++WL + SD TS D + L + +IVEE+RAA+
Sbjct: 151 PRGPTVEETVQKEAIRKQGLLQWLDSLQSDDPTS-----PDLR-LTVGAMIVEEMRAAIE 204
Query: 113 SKTQFHCSAGIAHNKV 128
SKT F CSAGI+HNKV
Sbjct: 205 SKTGFQCSAGISHNKV 220
>sp|Q9Y253|POLH_HUMAN DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV=1
Length = 713
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGH--IAASQLSNTFVVGF 58
YR A EV+ ++S F+ ++ERASIDEAY+DLT V ER++ + I+A L +T++ G
Sbjct: 92 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGL 150
Query: 59 --GPDNNDEDA-----RKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAV 111
GP +E RK G+ +WL + D TS D Q L + VIVEE+RAA+
Sbjct: 151 PQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS-----PDLQ-LTVGAVIVEEMRAAI 204
Query: 112 LSKTQFHCSAGIAHNKV 128
+T F CSAGI+HNKV
Sbjct: 205 ERETGFQCSAGISHNKV 221
>sp|Q9UNA4|POLI_HUMAN DNA polymerase iota OS=Homo sapiens GN=POLI PE=1 SV=3
Length = 740
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS +VER DE ++DLT++V +R++ + + +LS V
Sbjct: 127 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQ---QLQSDELSAVTVS---- 179
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L++ L + I E+R A+ ++
Sbjct: 180 ----------------GHVYNNQSINLLDVLH--IRLLVGSQIAAEMREAMYNQLGLTGC 221
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 222 AGVASNKL 229
>sp|Q6R3M4|POLI_MOUSE DNA polymerase iota OS=Mus musculus GN=Poli PE=1 SV=1
Length = 717
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
YR +V +L EFS VER DE ++DLT++V +R++ + + ++ + V
Sbjct: 102 YREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKRLQ---QLPSEEVPSVTV----- 153
Query: 61 DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
G VY++ +L + L + I E+R A+ ++
Sbjct: 154 ---------------FGHVYNNQSVNLHNIMH--RRLVVGSQIAAEMREAMYNQLGLTGC 196
Query: 121 AGIAHNKV 128
AG+A NK+
Sbjct: 197 AGVAPNKL 204
>sp|A7Z6F3|DPO4_BACA2 DNA polymerase IV OS=Bacillus amyloliquefaciens (strain FZB42)
GN=dinB PE=3 SV=1
Length = 414
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR++ +E+ ++L E++++VE SIDE Y+D+TD H
Sbjct: 84 YRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPH 119
>sp|P54545|DPO41_BACSU DNA polymerase IV 1 OS=Bacillus subtilis (strain 168) GN=dinB1 PE=3
SV=2
Length = 414
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YRN+ R + +L E++++VE SIDE Y+D+TD
Sbjct: 84 YRNSSRAMFTILREYTDLVEPVSIDEGYMDMTD 116
>sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eso1 PE=1 SV=1
Length = 872
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 21/137 (15%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT-DVVHERMKSIGHIA-ASQLSNTFVVGF 58
YR+ +++ ++ + + +V++ASIDE +I+LT DV ++ ++ S+ SN +
Sbjct: 123 YRHESVKILNIIKKHAPVVKKASIDECFIELTSDVKRIVLEEYPYLKIPSEDSNVALP-- 180
Query: 59 GPDNNDEDARKAGVMEWLGQVYSDTDTSLMENT-EDFQE------LAIAGVIVEEIRAAV 111
+A V+ W + + +++ T ED++ L A IV+EIR +
Sbjct: 181 ----------QAPVLLWPAEFGMVIEEEVVDRTKEDYERDWDDVFLFYAAKIVKEIRDDI 230
Query: 112 LSKTQFHCSAGIAHNKV 128
+ ++ CSAG++ N +
Sbjct: 231 YLQLKYTCSAGVSFNPM 247
>sp|A1U339|DPO4_MARAV DNA polymerase IV OS=Marinobacter aquaeolei (strain ATCC 700491 /
DSM 11845 / VT8) GN=dinB PE=3 SV=1
Length = 353
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 27/34 (79%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV 34
YR ++V+A+L E +++VE S+DEA++D+TDV
Sbjct: 80 YRAVSQQVMAILREMTDLVEPLSLDEAFLDVTDV 113
>sp|Q8EQ56|DPO4_OCEIH DNA polymerase IV OS=Oceanobacillus iheyensis (strain DSM 14371 /
JCM 11309 / KCTC 3954 / HTE831) GN=dinB PE=3 SV=1
Length = 419
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGF 58
YR A RE+ +L+E + V+ SIDE Y+D+TD ++ + + A+QL + G
Sbjct: 88 YRAASREIFKMLAEITPYVQPVSIDEGYMDITDTIYAKDPL---VTANQLQQRILSGL 142
>sp|Q3KH18|DPO4_PSEPF DNA polymerase IV OS=Pseudomonas fluorescens (strain Pf0-1) GN=dinB
PE=3 SV=1
Length = 353
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR A +E+ + S++++++E S+DEAY+D++D H
Sbjct: 81 YREASKEIHTIFSDYTDLIEPLSLDEAYLDVSDSAH 116
>sp|A4XT24|DPO4_PSEMY DNA polymerase IV OS=Pseudomonas mendocina (strain ymp) GN=dinB
PE=3 SV=1
Length = 352
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
YR+ RE+ + +F++++E S+DEAY+D++D H
Sbjct: 81 YRSVSREIHGIFRQFTDLIEPLSLDEAYLDVSDSPH 116
>sp|Q8XK37|DPO4_CLOPE DNA polymerase IV OS=Clostridium perfringens (strain 13 / Type A)
GN=dinB PE=3 SV=1
Length = 359
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-------------VHERM-KSIGHIA 46
Y+ R+V+ +L+E+SNIVE S+DEA++D++ + ER+ K +G A
Sbjct: 82 YKKVSRQVMNILNEYSNIVEPLSLDEAFVDVSKSKRCKGSATLIALEIKERIFKEVGLTA 141
Query: 47 ASQLS-NTFVVGFGPDNNDEDA 67
++ +S N F+ D D
Sbjct: 142 SAGVSFNKFLAKMASDFRKPDG 163
>sp|Q9KCU7|DPO41_BACHD DNA polymerase IV 1 OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=dinB1 PE=3
SV=1
Length = 413
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH-----ERMKSIGHIAASQLSNTFV 55
YR+A +++ ++L E++ +VE+ SIDE Y+D+T + E K I +++
Sbjct: 83 YRSASQKIFSLLEEYTPLVEKVSIDEGYMDVTTTIKKVHPLELAKEIQQRILAEMDLPCS 142
Query: 56 VGFGPD 61
+G P+
Sbjct: 143 IGIAPN 148
>sp|Q5F8N2|DPO4_NEIG1 DNA polymerase IV OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA
1090) GN=dinB PE=3 SV=1
Length = 352
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYAGEVAKEIRAAIFAETGLTASAGIAPNK 147
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR ++ AV +++++E S+DEAY+D+T
Sbjct: 80 YRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVT 111
>sp|Q0SSQ2|DPO4_CLOPS DNA polymerase IV OS=Clostridium perfringens (strain SM101 / Type
A) GN=dinB PE=3 SV=1
Length = 359
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-------------VHERM-KSIGHIA 46
Y+ R+V+ +L+E+SN+VE S+DEA++D++ + ER+ K +G A
Sbjct: 82 YKKVSRQVMNILNEYSNLVEPLSLDEAFVDVSKSKRCKGSATLIALEIKERIFKEVGLTA 141
Query: 47 ASQLS-NTFVVGFGPDNNDEDA 67
++ +S N F+ D D
Sbjct: 142 SAGVSFNKFLAKMASDFRKPDG 163
>sp|Q9JYS8|DPO4_NEIMB DNA polymerase IV OS=Neisseria meningitidis serogroup B (strain
MC58) GN=dinB PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + AG + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYAGDVAKEIRAAIFAETGLTASAGIAPNK 147
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR ++ AV +++++E S+DEAY+D+T
Sbjct: 80 YRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVT 111
>sp|Q0TQ38|DPO4_CLOP1 DNA polymerase IV OS=Clostridium perfringens (strain ATCC 13124 /
NCTC 8237 / Type A) GN=dinB PE=3 SV=1
Length = 359
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDV-------------VHERM-KSIGHIA 46
Y+ R+V+ +L+E+SN+VE S+DEA++D++ + ER+ K +G A
Sbjct: 82 YKKVSRQVMNILNEYSNLVEHLSLDEAFVDVSKSKRCKGSATLMALEIKERIFKEVGLTA 141
Query: 47 ASQLS-NTFVVGFGPDNNDEDA 67
++ +S N F+ D D
Sbjct: 142 SAGVSFNKFLAKMASDFRKPDG 163
>sp|Q6D1H8|DPO4_ERWCT DNA polymerase IV OS=Erwinia carotovora subsp. atroseptica (strain
SCRI 1043 / ATCC BAA-672) GN=dinB PE=3 SV=1
Length = 352
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y++ R++ + S +++++E S+DEAY+D+TD H
Sbjct: 79 YKSTSRQIREIFSRYTSLIEPLSLDEAYLDVTDSPH 114
>sp|A8MGJ5|DPO4_ALKOO DNA polymerase IV OS=Alkaliphilus oremlandii (strain OhILAs)
GN=dinB PE=3 SV=1
Length = 398
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 26/32 (81%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR EV+ +LS+++ I+E++SIDEA++D+T
Sbjct: 81 YRQKSSEVMNLLSKYTPIIEQSSIDEAWLDMT 112
>sp|Q92XH8|DPO42_RHIME DNA polymerase IV 2 OS=Rhizobium meliloti (strain 1021) GN=dinB2
PE=3 SV=2
Length = 354
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ +E++ +VE S+DEAY+D+T+
Sbjct: 78 YRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTE 110
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ TE+F+ L +A I EEIR + ++T SAG+++NK
Sbjct: 102 DEAYLDVTENFRGLKLATEIAEEIRGRIRAETHLTASAGVSYNK 145
>sp|A5N2U5|DPO4_CLOK5 DNA polymerase IV OS=Clostridium kluyveri (strain ATCC 8527 / DSM
555 / NCIMB 10680) GN=dinB PE=3 SV=1
Length = 400
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 26/32 (81%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
Y+ +EV+ +LS+++ ++E+ SIDEA++D+T
Sbjct: 81 YKQKSKEVMGILSKYTPVIEKNSIDEAWLDMT 112
>sp|Q8XZ19|DPO4_RALSO DNA polymerase IV OS=Ralstonia solanacearum (strain GMI1000)
GN=dinB PE=3 SV=2
Length = 357
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR R++ A+ ++ +VE S+DEAY+D+TD
Sbjct: 79 YRQVARQIFAIYQGYTPLVEPLSLDEAYLDVTD 111
>sp|A9MNS1|DPO4_SALAR DNA polymerase IV OS=Salmonella arizonae (strain ATCC BAA-731 /
CDC346-86 / RSK2980) GN=dinB PE=3 SV=1
Length = 351
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDTPH 114
>sp|Q1I6D5|DPO4_PSEE4 DNA polymerase IV OS=Pseudomonas entomophila (strain L48) GN=dinB
PE=3 SV=1
Length = 354
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A R++ + ++++++E S+DEAY+D+TD
Sbjct: 81 YREASRDIHTIFRDYTDLIEPLSLDEAYLDVTD 113
>sp|P0DA79|DPO4_STRPQ DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=dinB PE=3 SV=1
Length = 365
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD 124
>sp|P0DA78|DPO4_STRP3 DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=dinB PE=3 SV=1
Length = 365
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD 124
>sp|Q99Y66|DPO4_STRP1 DNA polymerase IV OS=Streptococcus pyogenes serotype M1 GN=dinB
PE=3 SV=1
Length = 364
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD 124
>sp|Q1JF59|DPO4_STRPD DNA polymerase IV OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=dinB PE=3 SV=1
Length = 364
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD 124
>sp|Q8DXW9|DPO4_STRA5 DNA polymerase IV OS=Streptococcus agalactiae serotype V (strain
ATCC BAA-611 / 2603 V/R) GN=dinB PE=3 SV=1
Length = 364
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G EV + +++++VE SIDEAY+D+T+
Sbjct: 92 YRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVTE 124
>sp|Q8E3I8|DPO4_STRA3 DNA polymerase IV OS=Streptococcus agalactiae serotype III (strain
NEM316) GN=dinB PE=3 SV=1
Length = 364
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G EV + +++++VE SIDEAY+D+T+
Sbjct: 92 YRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVTE 124
>sp|Q3JZG9|DPO4_STRA1 DNA polymerase IV OS=Streptococcus agalactiae serotype Ia (strain
ATCC 27591 / A909 / CDC SS700) GN=dinB PE=3 SV=1
Length = 364
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G EV + +++++VE SIDEAY+D+T+
Sbjct: 92 YRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVTE 124
>sp|A6W1V6|DPO4_MARMS DNA polymerase IV OS=Marinomonas sp. (strain MWYL1) GN=dinB PE=3
SV=1
Length = 352
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A ++ A+ EF++I+E S+DEAY+D+T+
Sbjct: 81 YRLASEQMHAIFREFTDIIEPLSLDEAYLDVTN 113
>sp|Q5PF76|DPO4_SALPA DNA polymerase IV OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=dinB PE=3 SV=1
Length = 351
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>sp|Q87Y22|DPO4_PSESM DNA polymerase IV OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=dinB PE=3 SV=1
Length = 353
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ ++ ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHSIFRDYTDLIEPLSLDEAFLDVSDTHH 116
>sp|Q8NZI1|DPO4_STRP8 DNA polymerase IV OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=dinB PE=3 SV=1
Length = 364
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD 124
>sp|A2RCQ1|DPO4_STRPG DNA polymerase IV OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=dinB PE=3 SV=1
Length = 364
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR G ++ + ++++VE SIDEAY+D+TD
Sbjct: 92 YRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD 124
>sp|P63989|DPO4_SALTY DNA polymerase IV OS=Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720) GN=dinB PE=3 SV=1
Length = 351
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>sp|P63990|DPO4_SALTI DNA polymerase IV OS=Salmonella typhi GN=dinB PE=3 SV=1
Length = 351
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>sp|A9MY13|DPO4_SALPB DNA polymerase IV OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
SPB7) GN=dinB PE=3 SV=1
Length = 351
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>sp|Q57SU1|DPO4_SALCH DNA polymerase IV OS=Salmonella choleraesuis (strain SC-B67)
GN=dinB PE=3 SV=1
Length = 351
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A R V + S +++++E S+DEA++D+TD H
Sbjct: 79 YKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPH 114
>sp|B0KTK6|DPO4_PSEPG DNA polymerase IV OS=Pseudomonas putida (strain GB-1) GN=dinB PE=3
SV=1
Length = 354
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ + +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHGIFRDYTELIEPLSLDEAYLDVSD 113
>sp|A1KUQ3|DPO4_NEIMF DNA polymerase IV OS=Neisseria meningitidis serogroup C / serotype
2a (strain ATCC 700532 / FAM18) GN=dinB PE=3 SV=1
Length = 352
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR ++ AV +++++E S+DEAY+D+T
Sbjct: 80 YRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVT 111
>sp|A5VZT3|DPO4_PSEP1 DNA polymerase IV OS=Pseudomonas putida (strain F1 / ATCC 700007)
GN=dinB PE=3 SV=1
Length = 354
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ + +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHTIFRDYTELIEPLSLDEAYLDVSD 113
>sp|Q88NK4|DPO4_PSEPK DNA polymerase IV OS=Pseudomonas putida (strain KT2440) GN=dinB
PE=3 SV=1
Length = 354
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
YR A RE+ + +++ ++E S+DEAY+D++D
Sbjct: 81 YREASREIHTIFRDYTELIEPLSLDEAYLDVSD 113
>sp|Q9JRG1|DPO4_NEIMA DNA polymerase IV OS=Neisseria meningitidis serogroup A / serotype
4A (strain Z2491) GN=dinB PE=3 SV=1
Length = 352
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 84 DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNK 127
D + ++ T +F+ + A + +EIRAA+ ++T SAGIA NK
Sbjct: 104 DEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNK 147
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLT 32
YR ++ AV +++++E S+DEAY+D+T
Sbjct: 80 YRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVT 111
>sp|Q12Q05|DPO4_SHEDO DNA polymerase IV OS=Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013) GN=dinB PE=3 SV=1
Length = 358
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y++ ++ +V + +++I+E S+DEAY+D+TD H
Sbjct: 79 YKSVSAQIRSVFARYTDIIEPLSLDEAYLDVTDSPH 114
>sp|Q48FB2|DPO4_PSE14 DNA polymerase IV OS=Pseudomonas syringae pv. phaseolicola (strain
1448A / Race 6) GN=dinB PE=3 SV=1
Length = 353
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A RE+ + ++++++E S+DEA++D++D H
Sbjct: 81 YKEASREIHTIFRDYTDLIEPLSLDEAFLDVSDAGH 116
>sp|A4W6W8|DPO4_ENT38 DNA polymerase IV OS=Enterobacter sp. (strain 638) GN=dinB PE=3
SV=1
Length = 352
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ A + + S +++++E S+DEAY+D+TD +H
Sbjct: 79 YKEASVRIQEIFSRYTSLIEPLSLDEAYLDVTDSLH 114
>sp|A4VZ21|DPO4_STRS2 DNA polymerase IV OS=Streptococcus suis (strain 98HAH33) GN=dinB
PE=3 SV=1
Length = 355
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 33
Y+ GR+V + ++++VE SIDEAY+D+T+
Sbjct: 92 YQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE 124
>sp|Q98JM5|DPO42_RHILO DNA polymerase IV 2 OS=Rhizobium loti (strain MAFF303099) GN=dinB2
PE=3 SV=1
Length = 415
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVH 36
Y+ G I VL +F+ +VER SIDEA+ D+ H
Sbjct: 77 YQRLGDAAIKVLDDFTPVVERISIDEAFADVAGCTH 112
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,843,821
Number of Sequences: 539616
Number of extensions: 1696524
Number of successful extensions: 4979
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4579
Number of HSP's gapped (non-prelim): 411
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)