Query psy16216
Match_columns 129
No_of_seqs 101 out of 1041
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:48:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ecq_A DNA polymerase ETA; tra 99.9 1.1E-22 3.8E-27 167.7 7.7 121 1-128 95-224 (435)
2 3mfi_A DNA polymerase ETA; DNA 99.9 5.2E-22 1.8E-26 167.1 6.7 122 1-128 138-276 (520)
3 3osn_A DNA polymerase IOTA; ho 99.8 7.7E-21 2.6E-25 156.2 7.2 102 1-128 102-204 (420)
4 1t94_A Polymerase (DNA directe 99.8 1.4E-19 4.7E-24 149.9 3.0 38 1-38 107-144 (459)
5 3pzp_A DNA polymerase kappa; D 99.7 4.7E-19 1.6E-23 149.0 3.4 39 1-39 163-201 (517)
6 1jx4_A DNA polymerase IV (fami 99.7 2.3E-19 7.9E-24 143.7 0.9 69 1-128 81-149 (352)
7 1im4_A DBH; DNA polymerase PAL 99.7 3.5E-19 1.2E-23 135.4 1.3 70 1-128 86-155 (221)
8 3bq0_A POL IV, DBH, DNA polyme 99.7 5.5E-19 1.9E-23 141.6 1.3 70 1-128 81-150 (354)
9 4f4y_A POL IV, DNA polymerase 99.7 1.3E-18 4.4E-23 140.4 1.2 70 1-128 81-150 (362)
10 3gqc_A DNA repair protein REV1 99.7 6.1E-18 2.1E-22 142.0 2.4 70 1-128 217-286 (504)
11 4dez_A POL IV 1, DNA polymeras 99.7 8.5E-18 2.9E-22 134.8 0.2 67 1-128 83-149 (356)
12 2aq4_A DNA repair protein REV1 99.6 4.8E-17 1.7E-21 133.9 1.8 70 1-128 137-211 (434)
13 3tvk_A DGC, diguanylate cyclas 63.0 4.8 0.00016 28.5 2.7 26 100-125 97-130 (179)
14 3ign_A Diguanylate cyclase; gg 54.5 7.7 0.00026 26.0 2.5 26 100-125 103-136 (177)
15 3hva_A Protein FIMX; ggdef dig 53.2 8.3 0.00028 25.8 2.5 26 100-125 108-141 (177)
16 2qt7_A Receptor-type tyrosine- 50.8 17 0.00057 23.5 3.4 26 101-126 64-90 (91)
17 4hti_A Receptor-type tyrosine- 45.1 23 0.00077 23.2 3.4 25 101-125 71-96 (99)
18 3ung_C CMR2DHD; ferredoxin fol 42.9 13 0.00045 32.3 2.5 26 100-125 506-538 (693)
19 1w25_A Stalked-cell differenti 41.6 14 0.00049 28.9 2.5 26 100-125 383-418 (459)
20 3i5c_A Fusion of general contr 39.9 17 0.00059 24.8 2.4 26 100-125 126-161 (206)
21 3hvw_A Diguanylate-cyclase (DG 38.0 11 0.00038 25.5 1.1 26 100-125 93-125 (176)
22 1dd4_C 50S ribosomal protein L 30.5 34 0.0012 18.5 2.1 20 105-124 19-38 (40)
23 3mtk_A Diguanylate cyclase/pho 30.3 23 0.00077 23.8 1.7 26 100-125 97-129 (178)
24 3ezu_A Ggdef domain protein; m 29.5 37 0.0013 26.0 3.0 25 100-124 277-305 (342)
25 3lax_A Phenylacetate-coenzyme 27.1 56 0.0019 20.3 3.1 22 100-121 63-84 (109)
26 3pjx_A Cyclic dimeric GMP bind 24.9 40 0.0014 26.3 2.4 26 100-125 116-148 (430)
27 2b8i_A PAS factor; four helix 24.3 43 0.0015 20.7 2.0 14 105-118 25-38 (77)
28 3icl_A EAL/ggdef domain protei 23.4 30 0.001 22.8 1.3 25 101-125 96-127 (171)
29 3gxs_A Phenylacetate-coenzyme 22.7 76 0.0026 19.8 3.1 22 100-121 63-84 (109)
30 2fcg_F Cationic, antibacterial 21.7 57 0.002 16.1 1.8 20 2-21 6-25 (26)
No 1
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=99.87 E-value=1.1e-22 Score=167.72 Aligned_cols=121 Identities=45% Similarity=0.761 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHHHhcchhhhhcccchhhhhccHHHHHHHHhcC--ccccccCCCcceeccCCCCC-------chHHhhhc
Q psy16216 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIG--HIAASQLSNTFVVGFGPDNN-------DEDARKAG 71 (129)
Q Consensus 1 Yr~~S~~I~~il~~~~p~ve~~SiDEaylDlT~~v~~~l~~~~--~~~~~~l~~~~~~g~~~~~~-------~~~~~~~~ 71 (129)
|+++|++|+++|++|+ .||++||||+|||||+.++.++...+ +.+.+.++++++.|+|.... .++.+..+
T Consensus 95 Y~~~S~~i~~il~~~~-~vE~~SiDEafLDlT~~~~~~l~~l~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 173 (435)
T 4ecq_A 95 YREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQG 173 (435)
T ss_dssp HHHHHHHHHHHHHHHS-CEEEEETTEEEEECHHHHHHHHHHHTTCCCCGGGCTTEEETTCSCCCC-----CSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-ceeecccceEEEECccchhhcchhccccccccccccccccccCCCcccccccccchhhhhccc
Confidence 8999999999999999 99999999999999999987775533 33345566677777765321 23445556
Q ss_pred hhhhhccccCCCCccccCChHHHHHHHHHHHHHHHHHHHHHHhhCceeeecccCCCC
Q psy16216 72 VMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128 (129)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~ia~~iR~~I~~~lgltcSaGIa~NKl 128 (129)
...|..... .+..+|.++ +|.+|+.+|++||++|+++||||||||||+||+
T Consensus 174 ~~~~~~~~~-----~~~~~~~~~-~l~~~~~ia~~Ir~~I~~~~Gl~~svGIa~nk~ 224 (435)
T 4ecq_A 174 LFQWLDSLQ-----IDNLTSPDL-QLTVGAVIVEEMRAAIERETGFQCSAGISHNKV 224 (435)
T ss_dssp HHHHHHHCC-----TTCTTCHHH-HHHHHHHHHHHHHHHHHHHHSCCEEEEEESSHH
T ss_pred ccccccccc-----cccccchhh-hhhHHHHHHHHHHHHHHHHhCCcEEEEecCCHH
Confidence 666754321 123467887 888999999999999999999999999999986
No 2
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=99.85 E-value=5.2e-22 Score=167.11 Aligned_cols=122 Identities=23% Similarity=0.415 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHhcchhhhhcccchhhhhccHHHHHHHHhcCcc-cc---------ccCCCcceec-------cCCCCC
Q psy16216 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHI-AA---------SQLSNTFVVG-------FGPDNN 63 (129)
Q Consensus 1 Yr~~S~~I~~il~~~~p~ve~~SiDEaylDlT~~v~~~l~~~~~~-~~---------~~l~~~~~~g-------~~~~~~ 63 (129)
||++|++|++||++|+|.||++||||+|||||+.+.++|...... .+ ..+...+..| .|..+.
T Consensus 138 Yr~~S~~i~~il~~~~~~vE~~SIDEaflDlt~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~p~~~~ 217 (520)
T 3mfi_A 138 YRRESRKALAIFKWACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPE 217 (520)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEETTEEEEECHHHHHHHHHHCSSCEEETTEEHHHHTHHHHHHHHHTCCCTTSEEECCCG
T ss_pred HHHHHHHHHHHHHHhCCCeEEeccceEEEEcCcchhhccccccccccccccccccchhhhhhcccccccccccccccccc
Confidence 899999999999999999999999999999999987665421100 00 0000000000 000000
Q ss_pred chHHhhhchhhhhccccCCCCccccCChHHHHHHHHHHHHHHHHHHHHHHhhCceeeecccCCCC
Q psy16216 64 DEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128 (129)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~ia~~iR~~I~~~lgltcSaGIa~NKl 128 (129)
+- . ...|.+...-..+.....+|+++ ++..+.++|++||++|+++||||||||||+||+
T Consensus 218 ~~--~---~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ia~~IR~~I~~~tGlt~SvGIa~nK~ 276 (520)
T 3mfi_A 218 KI--K---SLKFEGDVFNPEGRDLITDWDDV-ILALGSQVCKGIRDSIKDILGYTTSCGLSSTKN 276 (520)
T ss_dssp GG--G---GCCCCSEECCTTCCCSCCSHHHH-HHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred ch--h---ccccccccccccccccccccccc-ccchHHHHHHHHHHHHHHHhCCcEEEEEeCCHH
Confidence 00 0 00000000000011234689998 788999999999999999999999999999996
No 3
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=99.82 E-value=7.7e-21 Score=156.24 Aligned_cols=102 Identities=29% Similarity=0.458 Sum_probs=77.8
Q ss_pred ChHHHHHHHHHHHhcchhhhhcccchhhhhccHHHHHHHHhcCccccccCCCcceeccCCCCCchHHhhhchhhhhcccc
Q psy16216 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVY 80 (129)
Q Consensus 1 Yr~~S~~I~~il~~~~p~ve~~SiDEaylDlT~~v~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
|+++|++|++++++|+|.||.+||||+|||||+++..++.+..+.+.+ .....|+-
T Consensus 102 Y~~~S~~i~~il~~~tp~ve~~SiDE~fLDvt~~~~~~l~~~~~~~~~---~~~~~g~l--------------------- 157 (420)
T 3osn_A 102 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELS---AVTVSGHV--------------------- 157 (420)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEETTTEEEEECHHHHHHHHHHSCSSSGG---GCCCCSEE---------------------
T ss_pred HHHHHHHHHHHHHHhCCCeEEecCCEEEEECcccchhhcccccccccc---cccccccc---------------------
Confidence 899999999999999999999999999999999987766443221110 00111110
Q ss_pred CCC-CccccCChHHHHHHHHHHHHHHHHHHHHHHhhCceeeecccCCCC
Q psy16216 81 SDT-DTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128 (129)
Q Consensus 81 ~~~-~~~~~~~~~~~~~l~~aa~ia~~iR~~I~~~lgltcSaGIa~NKl 128 (129)
++ +..+..+|++. ++..+.++|++||++|+++||||||+|||+||+
T Consensus 158 -~g~~~~~~~~~~~~-~l~~~~~la~~Ir~~I~~~~Glt~svGIa~nk~ 204 (420)
T 3osn_A 158 -YNNQSINLLDVLHI-RLLVGSQIAAEMREAMYNQLGLTGCAGVASNKL 204 (420)
T ss_dssp -GGGCCCCTTCHHHH-HHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred -ccccccccccchhh-cchHHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Confidence 11 11123568877 788899999999999999999999999999986
No 4
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=99.76 E-value=1.4e-19 Score=149.89 Aligned_cols=38 Identities=34% Similarity=0.638 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHhcchhhhhcccchhhhhccHHHHHH
Q psy16216 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHER 38 (129)
Q Consensus 1 Yr~~S~~I~~il~~~~p~ve~~SiDEaylDlT~~v~~~ 38 (129)
|+++|++|+++|++|+|.||++||||+|||||+++..+
T Consensus 107 Y~~~S~~i~~il~~~~p~ve~~SiDEafLDvT~~~~~~ 144 (459)
T 1t94_A 107 YRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 144 (459)
T ss_dssp HHHHHHHHHHHHHHHCTTCEECSSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCceEEeecceEEEECchhHHHh
Confidence 89999999999999999999999999999999998754
No 5
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=99.74 E-value=4.7e-19 Score=148.99 Aligned_cols=39 Identities=33% Similarity=0.613 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHhcchhhhhcccchhhhhccHHHHHHH
Q psy16216 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERM 39 (129)
Q Consensus 1 Yr~~S~~I~~il~~~~p~ve~~SiDEaylDlT~~v~~~l 39 (129)
|+++|++|+++|.+|+|.||.+||||+|||||+++..++
T Consensus 163 Y~~~S~~v~~il~~ytp~ve~~SiDEafLDvT~~~~~~~ 201 (517)
T 3pzp_A 163 YRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQ 201 (517)
T ss_dssp HHHHHHHHHHHHHTTCTTCBCCSSSEEEEETHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcEEEECCceEEEEccccccccc
Confidence 899999999999999999999999999999999986554
No 6
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=99.74 E-value=2.3e-19 Score=143.75 Aligned_cols=69 Identities=36% Similarity=0.582 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHhcchhhhhcccchhhhhccHHHHHHHHhcCccccccCCCcceeccCCCCCchHHhhhchhhhhcccc
Q psy16216 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVY 80 (129)
Q Consensus 1 Yr~~S~~I~~il~~~~p~ve~~SiDEaylDlT~~v~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
|+++|++|++++.+|+|.||.+||||+|||||+..+
T Consensus 81 Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~-------------------------------------------- 116 (352)
T 1jx4_A 81 YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVR-------------------------------------------- 116 (352)
T ss_dssp HHHHHHHHHHHHTTTCSCEEEEETTEEEEECTTTCS--------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCeEEecCceEEEeccCccc--------------------------------------------
Confidence 899999999999999999999999999999998642
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHHHHHHHHHhhCceeeecccCCCC
Q psy16216 81 SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128 (129)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~aa~ia~~iR~~I~~~lgltcSaGIa~NKl 128 (129)
.+..+.++|++||++|++++|||||+|||+||+
T Consensus 117 ---------------~~~~~~~~a~~ir~~i~~~~Gl~~svGia~nk~ 149 (352)
T 1jx4_A 117 ---------------DYREAYNLGLEIKNKILEKEKITVTVGISKNKV 149 (352)
T ss_dssp ---------------SHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred ---------------ccccHHHHHHHHHHHHHHHHCCcEEEEEcCCHH
Confidence 122367899999999999999999999999985
No 7
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=99.73 E-value=3.5e-19 Score=135.39 Aligned_cols=70 Identities=29% Similarity=0.518 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHHhcchhhhhcccchhhhhccHHHHHHHHhcCccccccCCCcceeccCCCCCchHHhhhchhhhhcccc
Q psy16216 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVY 80 (129)
Q Consensus 1 Yr~~S~~I~~il~~~~p~ve~~SiDEaylDlT~~v~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
|+++|++|++++.+|+|.||.+||||+|||+|+..+.
T Consensus 86 Y~~~s~~i~~~l~~~tp~ve~~siDE~~lDvt~~~~~------------------------------------------- 122 (221)
T 1im4_A 86 YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEG------------------------------------------- 122 (221)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCceEEecCCeEEEEecchhhh-------------------------------------------
Confidence 8899999999999999999999999999999986420
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHHHHHHHHHhhCceeeecccCCCC
Q psy16216 81 SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128 (129)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~aa~ia~~iR~~I~~~lgltcSaGIa~NKl 128 (129)
.+..+.+++++||++|++++|+|||+|||+||+
T Consensus 123 ---------------l~~~~~~la~~ir~~i~~~~Gl~~svGia~nk~ 155 (221)
T 1im4_A 123 ---------------NFENGIELARKIKQEILEKEKITVTVGVAPNKI 155 (221)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred ---------------ccCCHHHHHHHHHHHHHHHhCCeEEEEeCCCHH
Confidence 012357899999999999999999999999986
No 8
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=99.72 E-value=5.5e-19 Score=141.62 Aligned_cols=70 Identities=29% Similarity=0.518 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHHhcchhhhhcccchhhhhccHHHHHHHHhcCccccccCCCcceeccCCCCCchHHhhhchhhhhcccc
Q psy16216 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVY 80 (129)
Q Consensus 1 Yr~~S~~I~~il~~~~p~ve~~SiDEaylDlT~~v~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
|+++|++|++++.+|+|.||.+||||+|||||+..+.
T Consensus 81 Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~~------------------------------------------- 117 (354)
T 3bq0_A 81 YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEG------------------------------------------- 117 (354)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCEEEecCCeeEEecCcchhh-------------------------------------------
Confidence 8999999999999999999999999999999986420
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHHHHHHHHHhhCceeeecccCCCC
Q psy16216 81 SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128 (129)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~aa~ia~~iR~~I~~~lgltcSaGIa~NKl 128 (129)
.+..+.+++++||++|++++|||||+|||+||+
T Consensus 118 ---------------~~~~~~~la~~ir~~i~~~~Gl~~svGia~nk~ 150 (354)
T 3bq0_A 118 ---------------NFENGIELARKIKQEILEKEKITVTVGVAPNKI 150 (354)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred ---------------ccCCHHHHHHHHHHHHHHHHCCcEEeeeccCHH
Confidence 012357899999999999999999999999985
No 9
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=99.70 E-value=1.3e-18 Score=140.44 Aligned_cols=70 Identities=29% Similarity=0.518 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHhcchhhhhcccchhhhhccHHHHHHHHhcCccccccCCCcceeccCCCCCchHHhhhchhhhhcccc
Q psy16216 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVY 80 (129)
Q Consensus 1 Yr~~S~~I~~il~~~~p~ve~~SiDEaylDlT~~v~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
|+++|++|++++.+|+|.||.+||||+|||+|+..+.
T Consensus 81 Y~~~s~~i~~il~~~tp~ve~~SiDEa~LDvt~~~~~------------------------------------------- 117 (362)
T 4f4y_A 81 YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEG------------------------------------------- 117 (362)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCEEEecCceEEEecCCcccc-------------------------------------------
Confidence 8999999999999999999999999999999986420
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHHHHHHHHHhhCceeeecccCCCC
Q psy16216 81 SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128 (129)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~aa~ia~~iR~~I~~~lgltcSaGIa~NKl 128 (129)
.+..+.+++++||++|+++||||||+|||+||+
T Consensus 118 ---------------~~~~~~~~a~~ir~~I~~~~Gl~~svGIa~nk~ 150 (362)
T 4f4y_A 118 ---------------NFENGIELARKIKQEILEKEKITVTVGVAPNKI 150 (362)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHCCCCEEEEESSHH
T ss_pred ---------------ccCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Confidence 012357899999999999999999999999985
No 10
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=99.68 E-value=6.1e-18 Score=141.96 Aligned_cols=70 Identities=23% Similarity=0.438 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHhcchhhhhcccchhhhhccHHHHHHHHhcCccccccCCCcceeccCCCCCchHHhhhchhhhhcccc
Q psy16216 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVY 80 (129)
Q Consensus 1 Yr~~S~~I~~il~~~~p~ve~~SiDEaylDlT~~v~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
|+++|++|++++.+|+|.||.+||||+|||||+.....
T Consensus 217 Y~~~S~~i~~il~~~tp~VE~~SiDEafLDvtg~~~l~------------------------------------------ 254 (504)
T 3gqc_A 217 YKEVAQTLYETLASYTHNIEAVSCDEALVDITEILAET------------------------------------------ 254 (504)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEEETTEEEEECHHHHHHH------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEecCCeEEEeccchHhhc------------------------------------------
Confidence 89999999999999999999999999999999987520
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHHHHHHHHHhhCceeeecccCCCC
Q psy16216 81 SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128 (129)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~aa~ia~~iR~~I~~~lgltcSaGIa~NKl 128 (129)
+. -+.++|++||++|+++||||||||||+||+
T Consensus 255 --g~--------------~~~~la~~Ir~~I~~~tGlt~SvGIa~nk~ 286 (504)
T 3gqc_A 255 --KL--------------TPDEFANAVRMEIKDQTKCAASVGIGSNIL 286 (504)
T ss_dssp --CC--------------CHHHHHHHHHHHHHHHHSCCEEEEEESSHH
T ss_pred --CC--------------CHHHHHHHHHHHHHHHhCCcEEEEEeCCHH
Confidence 10 146899999999999999999999999986
No 11
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=99.65 E-value=8.5e-18 Score=134.82 Aligned_cols=67 Identities=31% Similarity=0.481 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHHhcchhhhhcccchhhhhccHHHHHHHHhcCccccccCCCcceeccCCCCCchHHhhhchhhhhcccc
Q psy16216 1 YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVY 80 (129)
Q Consensus 1 Yr~~S~~I~~il~~~~p~ve~~SiDEaylDlT~~v~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
|+++|++|++++++|+|.||.+||||+|||+|..-.
T Consensus 83 Y~~~s~~v~~il~~~~p~ve~~SiDEafld~t~~~~-------------------------------------------- 118 (356)
T 4dez_A 83 YDEASEQVMGLLRDLGHPLEVWGWDEAYLGADLPDE-------------------------------------------- 118 (356)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEETTTEEEEEEECCTT--------------------------------------------
T ss_pred HHHHHHHHHHHhhhcCCceeecCcchhheecccccC--------------------------------------------
Confidence 899999999999999999999999999999985310
Q ss_pred CCCCccccCChHHHHHHHHHHHHHHHHHHHHHHhhCceeeecccCCCC
Q psy16216 81 SDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKV 128 (129)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~aa~ia~~iR~~I~~~lgltcSaGIa~NKl 128 (129)
++ +.+++.+||++|+++||+|||+|||+||+
T Consensus 119 --~~---------------~~~~a~~ir~~i~~~~gl~~siGIa~nk~ 149 (356)
T 4dez_A 119 --SD---------------PVEVAERIRTVVAAETGLSCSVGISDNKQ 149 (356)
T ss_dssp --CC---------------HHHHHHHHHHHHHHHHSCCEEEEEESSHH
T ss_pred --CC---------------HHHHHHHHHHHHHHHhCCccccchhccHH
Confidence 01 35799999999999999999999999985
No 12
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=99.63 E-value=4.8e-17 Score=133.85 Aligned_cols=70 Identities=24% Similarity=0.348 Sum_probs=59.0
Q ss_pred ChHHHHHHHHHHHhc--chhhhhcccchhhhh--ccHHHHHHHHhcCccccccCCCcceeccCCCCCchHHhhhchhhhh
Q psy16216 1 YRNAGREVIAVLSEF--SNIVERASIDEAYID--LTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWL 76 (129)
Q Consensus 1 Yr~~S~~I~~il~~~--~p~ve~~SiDEaylD--lT~~v~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 76 (129)
|+++|++|++++.+| +|.||.+||||+||| +|+.....
T Consensus 137 Y~~~S~~i~~il~~~~~t~~ve~~SiDEaflD~~vt~~~~~~-------------------------------------- 178 (434)
T 2aq4_A 137 FQLKSEAFYSTLKRLNIFNLILPISIDEAVCVRIIPDNIHNT-------------------------------------- 178 (434)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEETTEEEEEEEECC-------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCceeEEcCcCccchhhc--------------------------------------
Confidence 899999999999997 589999999999999 88865310
Q ss_pred ccccCCCCccccCChHHHHHHHHHHHHHHHHHHHHHHhh-CceeeecccCCCC
Q psy16216 77 GQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKT-QFHCSAGIAHNKV 128 (129)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~aa~ia~~iR~~I~~~l-gltcSaGIa~NKl 128 (129)
...+.++|++||++|+++| |||||||||+||+
T Consensus 179 --------------------~~~~~~la~~Ir~~I~~~~gGlt~svGIa~nk~ 211 (434)
T 2aq4_A 179 --------------------NTLNARLCEEIRQEIFQGTNGCTVSIGCSDSLV 211 (434)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHSSCCEEEEEESSHH
T ss_pred --------------------CCCHHHHHHHHHHHHHHHcCCCcEEEEecCCHH
Confidence 0125789999999999999 8999999999985
No 13
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=62.97 E-value=4.8 Score=28.46 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHh--------hCceeeecccC
Q psy16216 100 AGVIVEEIRAAVLSK--------TQFHCSAGIAH 125 (129)
Q Consensus 100 aa~ia~~iR~~I~~~--------lgltcSaGIa~ 125 (129)
+..++.+|++.|.+. +.+|+|+||+.
T Consensus 97 ~~~~~~~i~~~i~~~~~~~~~~~~~vt~SiGia~ 130 (179)
T 3tvk_A 97 ACRAGVRICQLVDNHAITHSEGHINITVTAGVSR 130 (179)
T ss_dssp HHHHHHHHHHHHHHSCEEETTEEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCcccCCceEEEEEEEEEEe
Confidence 467788888888652 46899999984
No 14
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=54.46 E-value=7.7 Score=26.04 Aligned_cols=26 Identities=46% Similarity=0.608 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHH--------hhCceeeecccC
Q psy16216 100 AGVIVEEIRAAVLS--------KTQFHCSAGIAH 125 (129)
Q Consensus 100 aa~ia~~iR~~I~~--------~lgltcSaGIa~ 125 (129)
+..++.+|++.+.+ .+.+++|+||+.
T Consensus 103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~siGi~~ 136 (177)
T 3ign_A 103 ARVICERIREAIEKSTVSTSAGDIQYTVSMGIAQ 136 (177)
T ss_dssp HHHHHHHHHHHHHTCCEECSSCEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCcccCCCceeEEEEEEEEe
Confidence 57788888888876 346899999985
No 15
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=53.18 E-value=8.3 Score=25.80 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHH--------hhCceeeecccC
Q psy16216 100 AGVIVEEIRAAVLS--------KTQFHCSAGIAH 125 (129)
Q Consensus 100 aa~ia~~iR~~I~~--------~lgltcSaGIa~ 125 (129)
+..++.+|+..+.+ .+.+++|+||+.
T Consensus 108 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~siGi~~ 141 (177)
T 3hva_A 108 AQAALQRLLKKVENHLFELNGRSAQATLSIGVAG 141 (177)
T ss_dssp HHHHHHHHHHHHHTCCEEETTEEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhCccccCCceeeEEEEEEEEE
Confidence 56788888888876 246899999985
No 16
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=50.77 E-value=17 Score=23.50 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhCcee-eecccCC
Q psy16216 101 GVIVEEIRAAVLSKTQFHC-SAGIAHN 126 (129)
Q Consensus 101 a~ia~~iR~~I~~~lgltc-SaGIa~N 126 (129)
++.|-.+|..+.+++|+.. .+||+..
T Consensus 64 a~~a~~~k~~Le~~~G~~Iv~aGVG~r 90 (91)
T 2qt7_A 64 TQQAGLVKSELEAQTGLQILQTGVGQR 90 (91)
T ss_dssp HHHHHHTHHHHHHHHTSCEEEEEEECC
T ss_pred HHHHHHhHHHHHHhhCeEEEecccCCC
Confidence 5666668999999999988 9999863
No 17
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=45.08 E-value=23 Score=23.21 Aligned_cols=25 Identities=4% Similarity=0.120 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhCcee-eecccC
Q psy16216 101 GVIVEEIRAAVLSKTQFHC-SAGIAH 125 (129)
Q Consensus 101 a~ia~~iR~~I~~~lgltc-SaGIa~ 125 (129)
++-+-.+|..|.+++|+.. ++||+.
T Consensus 71 A~~a~~~K~~Le~~tG~~I~~aGvG~ 96 (99)
T 4hti_A 71 EKATVDNKDKLEETSGLKILQTGVGS 96 (99)
T ss_dssp HHHHHHTHHHHHHHHSSCEEEEEECC
T ss_pred HHHHHHHHHHHHHhhCeEEEeccccC
Confidence 4555569999999999886 899875
No 18
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=42.90 E-value=13 Score=32.25 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHh-------hCceeeecccC
Q psy16216 100 AGVIVEEIRAAVLSK-------TQFHCSAGIAH 125 (129)
Q Consensus 100 aa~ia~~iR~~I~~~-------lgltcSaGIa~ 125 (129)
+-++|.+||+.+.+. -++|.|+||+.
T Consensus 506 AlelAe~LRe~F~~~~t~~~~~~~ITiSaGVAi 538 (693)
T 3ung_C 506 ALEVAYKIRKEFGKSFENGSLLPGWKLSAGILI 538 (693)
T ss_dssp HHHHHHHHHHHHHTC---------CCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccccCCCCceEEEEEEE
Confidence 578888888888764 25799999984
No 19
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=41.63 E-value=14 Score=28.91 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHH----------hhCceeeecccC
Q psy16216 100 AGVIVEEIRAAVLS----------KTQFHCSAGIAH 125 (129)
Q Consensus 100 aa~ia~~iR~~I~~----------~lgltcSaGIa~ 125 (129)
+..++.+|++.|.+ .+.+|+|+||+.
T Consensus 383 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~t~siG~~~ 418 (459)
T 1w25_A 383 ALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSA 418 (459)
T ss_dssp HHHHHHHHHHHHHTSCEECGGGSCEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCccccCCCceeEEEEEEEEEe
Confidence 57888999988873 246999999975
No 20
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=39.89 E-value=17 Score=24.83 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHh----------hCceeeecccC
Q psy16216 100 AGVIVEEIRAAVLSK----------TQFHCSAGIAH 125 (129)
Q Consensus 100 aa~ia~~iR~~I~~~----------lgltcSaGIa~ 125 (129)
+..++..|++.+... ..+++|+||+.
T Consensus 126 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~siGi~~ 161 (206)
T 3i5c_A 126 ARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVST 161 (206)
T ss_dssp HHHHHHHHHHHHHHTCCEECSSSTTEECCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcccccCCCCCCceEEEEEEEEE
Confidence 567788888887652 24899999973
No 21
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=38.04 E-value=11 Score=25.54 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHH-------hhCceeeecccC
Q psy16216 100 AGVIVEEIRAAVLS-------KTQFHCSAGIAH 125 (129)
Q Consensus 100 aa~ia~~iR~~I~~-------~lgltcSaGIa~ 125 (129)
+..++.+|++.+.+ ...+++|+||+.
T Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~siGi~~ 125 (176)
T 3hvw_A 93 TESVCLRLLRAFESPVVCRGIPIKANVGLGVLP 125 (176)
T ss_dssp HHHHHHHHHHHTTSCEEETTEEECCCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCcccCCEEEEEEEEEEEEe
Confidence 46788888888765 346899999984
No 22
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=30.47 E-value=34 Score=18.55 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhCceeeeccc
Q psy16216 105 EEIRAAVLSKTQFHCSAGIA 124 (129)
Q Consensus 105 ~~iR~~I~~~lgltcSaGIa 124 (129)
.++-+.+++++|++.++.++
T Consensus 19 ~eLvk~leekfGVsaaa~va 38 (40)
T 1dd4_C 19 AELVKKLEDKFGVTAAAPVA 38 (40)
T ss_dssp HHHHHHHHHHTCCCSCC---
T ss_pred HHHHHHHHHHHCCCcccccc
Confidence 45667788999999876543
No 23
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=30.34 E-value=23 Score=23.85 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHh-------hCceeeecccC
Q psy16216 100 AGVIVEEIRAAVLSK-------TQFHCSAGIAH 125 (129)
Q Consensus 100 aa~ia~~iR~~I~~~-------lgltcSaGIa~ 125 (129)
+..++.+|++.+.+. ..+++|+||+.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~~~~~~~siGi~~ 129 (178)
T 3mtk_A 97 ISDFIERMLSQLLLPYNVNGNLIRVNFNIGAAQ 129 (178)
T ss_dssp HHHHHHHHHHHHTSCEEETTEEECCCEEEEEEE
T ss_pred HHHHHHHHHHHhcCCEEECCEEEEEEEEEEEEE
Confidence 356777888877643 34899999985
No 24
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with GG domain, structural genomics, joint center for structural GE JCSG; 1.95A {Geobacter sulfurreducens}
Probab=29.47 E-value=37 Score=25.98 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHh----hCceeeeccc
Q psy16216 100 AGVIVEEIRAAVLSK----TQFHCSAGIA 124 (129)
Q Consensus 100 aa~ia~~iR~~I~~~----lgltcSaGIa 124 (129)
+..++.+|++.+.+. ..+++|+||+
T Consensus 277 ~~~~~~~l~~~l~~~~~~~~~~~~siGva 305 (342)
T 3ezu_A 277 LRTVAENLRRSIEEESARMVPVTASIGVA 305 (342)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHhcccCCccceEEEEEEE
Confidence 466777777777654 5789999998
No 25
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=27.12 E-value=56 Score=20.26 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhCceeee
Q psy16216 100 AGVIVEEIRAAVLSKTQFHCSA 121 (129)
Q Consensus 100 aa~ia~~iR~~I~~~lgltcSa 121 (129)
..+++.+|+.++.+.+|+++.+
T Consensus 63 ~~~l~~~i~~~l~~~~gv~~~v 84 (109)
T 3lax_A 63 LQALTREITRQLKDEILVTPRV 84 (109)
T ss_dssp HHHHHHHHHHHHHHHHSSCCEE
T ss_pred hhhhHHHHHHHHHHHhCCccce
Confidence 4678899999999999988754
No 26
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=24.92 E-value=40 Score=26.33 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHH-------hhCceeeecccC
Q psy16216 100 AGVIVEEIRAAVLS-------KTQFHCSAGIAH 125 (129)
Q Consensus 100 aa~ia~~iR~~I~~-------~lgltcSaGIa~ 125 (129)
+..++.+|++.+.+ ...+++|+||+.
T Consensus 116 ~~~~~~~l~~~l~~~~~~~~~~~~~~~siGi~~ 148 (430)
T 3pjx_A 116 ALQLAQSLDSALSSLYATGATDVAAVASIGLAP 148 (430)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSCTTCEEEEEEE
T ss_pred HHHHHHHHHHHHhhhhhcCCeeeeEEEEEEEEe
Confidence 34566666666544 235789999975
No 27
>2b8i_A PAS factor; four helix bundle, lipid binding protein; 1.80A {Vibrio vulnificus}
Probab=24.29 E-value=43 Score=20.71 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhCce
Q psy16216 105 EEIRAAVLSKTQFH 118 (129)
Q Consensus 105 ~~iR~~I~~~lglt 118 (129)
.+||+..|++++++
T Consensus 25 A~iRQ~LYeqL~Lp 38 (77)
T 2b8i_A 25 ATIRQNLYEQLDLP 38 (77)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCc
Confidence 57999999999975
No 28
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=23.40 E-value=30 Score=22.76 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHh-------hCceeeecccC
Q psy16216 101 GVIVEEIRAAVLSK-------TQFHCSAGIAH 125 (129)
Q Consensus 101 a~ia~~iR~~I~~~-------lgltcSaGIa~ 125 (129)
..++..|++.+.+. +.+++|+||+.
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~~~siGia~ 127 (171)
T 3icl_A 96 ALVAQKILDGLAQPFVFGAQQIVISVSIGIAV 127 (171)
T ss_dssp HHHHHHHHHHHTSCEEETTEEECCCEEEEEEE
T ss_pred HHHHHHHHHHhhCCEEECCEEEEEEEEEEEEE
Confidence 45677777777542 36899999984
No 29
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=22.74 E-value=76 Score=19.79 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhCceeee
Q psy16216 100 AGVIVEEIRAAVLSKTQFHCSA 121 (129)
Q Consensus 100 aa~ia~~iR~~I~~~lgltcSa 121 (129)
..+++..|++.|.+.+|+++.+
T Consensus 63 ~~~l~~~i~~~l~~~~~~~~~v 84 (109)
T 3gxs_A 63 LQALTREITRQLKDEILVTPRV 84 (109)
T ss_dssp HHHHHHHHHHHHHHHHSSCCEE
T ss_pred HHHHHHHHHHHHHHhhCCceEE
Confidence 3678999999999999998743
No 30
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=21.70 E-value=57 Score=16.08 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHhcchhhhh
Q psy16216 2 RNAGREVIAVLSEFSNIVER 21 (129)
Q Consensus 2 r~~S~~I~~il~~~~p~ve~ 21 (129)
+.+.++|.++|...+|..|.
T Consensus 6 kkIgQkIkdFf~~l~prte~ 25 (26)
T 2fcg_F 6 KRIVQRIKDFLRNLVPRTES 25 (26)
T ss_dssp HHHHHHHHHHHHHSCCSCC-
T ss_pred HHHHHHHHHHHHhcCccccc
Confidence 34667899999988887653
Done!