RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16216
         (129 letters)



>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 389

 Score = 71.1 bits (173), Expect = 3e-16
 Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 11/139 (7%)

Query: 1   YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKS------IGHIAASQLSNTF 54
           YR   R+ + +     ++VERASIDE ++DL  +    +         G +      +  
Sbjct: 131 YRRESRKALKIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNI 190

Query: 55  VVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE-----LAIAGVIVEEIRA 109
              F   N D ++    + E +  +  + D    E  +   +     LA+   + + IR 
Sbjct: 191 REAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILALGSQVCKGIRD 250

Query: 110 AVLSKTQFHCSAGIAHNKV 128
           ++     +  S G++  K 
Sbjct: 251 SIKDILGYTTSCGLSSTKN 269


>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 333

 Score = 61.4 bits (148), Expect = 8e-13
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 17/144 (11%)

Query: 1   YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
           YR   +EV  +L+++       S+DEAY+++T  + ER           +     V    
Sbjct: 100 YRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDN 159

Query: 61  DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE-----------------LAIAGVI 103
              + +            ++ ++ + +    + FQ                     A  +
Sbjct: 160 PGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEV 219

Query: 104 VEEIRAAVLSKTQFHCSAGIAHNK 127
           V+EIR  +  KT    SAGIA N 
Sbjct: 220 VKEIRFRIEQKTTLTASAGIAPNT 243


>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 273

 Score = 52.9 bits (126), Expect = 6e-10
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 25/127 (19%)

Query: 1   YRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGP 60
           YR    +V  +L EFS +VER   DE ++DLT++V +R++ +     S ++ +  V    
Sbjct: 76  YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNNQ 135

Query: 61  DNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCS 120
             N  D                              L +   I  E+R A+ ++      
Sbjct: 136 SINLLDVLHI-------------------------RLLVGSQIAAEMREAMYNQLGLTGC 170

Query: 121 AGIAHNK 127
           AG+A NK
Sbjct: 171 AGVASNK 177


>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 192

 Score = 26.4 bits (57), Expect = 1.0
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 36  HERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQ 95
           + R+K +      +    F +      N  +      +E +  + S+       N  D  
Sbjct: 118 NHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDEL 177

Query: 96  ELA-IAGVIVEEIRA 109
            L  I   + E I A
Sbjct: 178 ALVTIVKTLGERIFA 192


>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 193

 Score = 26.4 bits (57), Expect = 1.1
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 53  TFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQEL-AIAGVIVEEI 107
            F +      N        +++ +  + S        N  D   L   AG + E+I
Sbjct: 135 RFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQI 190


>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 209

 Score = 25.9 bits (56), Expect = 1.3
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 103 IVEEIRAAVLSKTQFHCSAGIAHNK 127
           +  +I+  +L K +   + G+A NK
Sbjct: 129 LARKIKQEILEKEKITVTVGVAPNK 153


>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 184

 Score = 23.3 bits (49), Expect = 9.6
 Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 33  DVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVMEWLGQVYSDTDTSLMENTE 92
           DV  + + +    A S     F +G G   +         +  L     D++   ++  E
Sbjct: 115 DVSVDSVDAAADAARSNRVTVFPIGIGDRYDAAQ------LRILAGPAGDSNVVKLQRIE 168

Query: 93  DFQEL-AIAGVIVEEI 107
           D   +  +    + ++
Sbjct: 169 DLPTMVTLGNSFLHKL 184


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 464,284
Number of extensions: 19235
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 9
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.9 bits)