RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16220
(223 letters)
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 356 bits (915), Expect = e-125
Identities = 143/208 (68%), Positives = 170/208 (81%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M +RFDGRV +VTGAG GLGR+YAL AERGA VVVNDLGG G GK S AAD VV
Sbjct: 1 MASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVE 60
Query: 61 EIRSKGGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
EIR +GGKAV NY+SV G+K+V+TAL+ FGRID+V+NNAGILRD+SF+RISD DW ++Q
Sbjct: 61 EIRRRGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQ 120
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
VHL G+F+V+RAAW HMKKQNYGR++MTAS SG+ GNFGQANYSAAK+ L+GL+NTL I
Sbjct: 121 RVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVI 180
Query: 181 EGEKNNIHCNVIVPTAASRLTEDILPPG 208
EG KNNIHCN I P A SR+TE ++P
Sbjct: 181 EGRKNNIHCNTIAPNAGSRMTETVMPED 208
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 361 bits (928), Expect = e-123
Identities = 138/217 (63%), Positives = 176/217 (81%), Gaps = 2/217 (0%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
++R+DGRVA+VTGAGAGLGR YALL AERGA VVVNDLGG GDG S +AAD VV
Sbjct: 11 SDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVD 70
Query: 61 EIRSKGGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
EIR GG+AV +YNSV+DG K+++TA++ FGR+DI++NNAGILRD+S + S+ DW LV
Sbjct: 71 EIRKAGGEAVADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVN 130
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
DVHL G+F+ ++AA+P+MKKQNYGR++MT+SNSG+ GNFGQ NY+AAKM L+GL+NT++I
Sbjct: 131 DVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAI 190
Query: 181 EGEKNNIHCNVIVPTAASRLTEDILPPGSYPVKGFDP 217
EG +NN+ CNVIVPTAASR+TE ILP + P
Sbjct: 191 EGARNNVLCNVIVPTAASRMTEGILPDILF--NELKP 225
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 353 bits (907), Expect = e-120
Identities = 119/204 (58%), Positives = 155/204 (75%)
Query: 4 QVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIR 63
V F +V I+TGAG GLG+ Y+L A+ GA VVVNDLGG +G G +SKAAD VV EI
Sbjct: 3 PVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIV 62
Query: 64 SKGGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVH 123
GG AV +YN+V+DGDKIV+TA++NFG + ++INNAGILRD S ++++ D++LV DVH
Sbjct: 63 KNGGVAVADYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVH 122
Query: 124 LTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGE 183
L GAF V++AAWP+ +KQ YGR+V T+S +GL GNFGQANY++AK AL+G + TL+ EG
Sbjct: 123 LNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGA 182
Query: 184 KNNIHCNVIVPTAASRLTEDILPP 207
K NI N I P A SR+TE I+PP
Sbjct: 183 KYNIKANAIAPLARSRMTESIMPP 206
Score = 306 bits (786), Expect = e-102
Identities = 90/211 (42%), Positives = 131/211 (62%), Gaps = 12/211 (5%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
V +V ++TGAGAGLG+ YA A+ GA VVVND A V
Sbjct: 314 GAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD-----------ATKTVD 362
Query: 61 EIRSKGGKAVPNYNSVVD-GDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
EI++ GG+A P+ + V + I++ ++ +G IDI++NNAGILRD+SFA++S +W V
Sbjct: 363 EIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSV 422
Query: 120 QDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLS 179
Q VHL G F +SR AWP+ ++ +GR++ S SG+ GNFGQANYS++K ++GLS T++
Sbjct: 423 QQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMA 482
Query: 180 IEGEKNNIHCNVIVPTAASRLTEDILPPGSY 210
IEG KNNI N++ P A + +T I+
Sbjct: 483 IEGAKNNIKVNIVAPHAETAMTLSIMREQDK 513
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 328 bits (842), Expect = e-114
Identities = 88/216 (40%), Positives = 126/216 (58%), Gaps = 10/216 (4%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSS-KAADTVVA 60
DGRV IVTGAG G+GR++AL A GA VVVND+G DG S AA +VV
Sbjct: 20 GSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVD 79
Query: 61 EIRSKGGKAVPNYNSVVD---GDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQ 117
EI + GG+AV + ++V D ++QTA+E FG +D+++NNAGI+RD+ A S+ ++
Sbjct: 80 EITAAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFD 139
Query: 118 LVQDVHLTGAFRVSRAAWPHMK------KQNYGRLVMTASNSGLLGNFGQANYSAAKMAL 171
V VHL G F R A + + K GR++ T+S +GL G+ GQ NYSAAK +
Sbjct: 140 AVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGI 199
Query: 172 VGLSNTLSIEGEKNNIHCNVIVPTAASRLTEDILPP 207
L+ + E + + N I P+A +R+TE +
Sbjct: 200 ATLTLVGAAEMGRYGVTVNAIAPSARTRMTETVFAE 235
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 209 bits (535), Expect = 1e-68
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R ++A++TG G+GR+ A A GA + + DL A A IR+
Sbjct: 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADL-----------VPAPEAEAAIRNL 52
Query: 66 GGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
G + V V + + + FGR DI++NNAGI F ++ W+
Sbjct: 53 GRRVLTVKCDVSQPGDV---EAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKT 109
Query: 120 QDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLS 179
++++ F +++A P MK+ +GR++ S + L +Y + K A +G + L+
Sbjct: 110 FEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALA 169
Query: 180 IEGEKNNIHCNVIVP 194
+ K+ I N I P
Sbjct: 170 SDLGKDGITVNAIAP 184
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 202 bits (517), Expect = 9e-66
Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 20/214 (9%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ +R DG+ AI+TGAGAG+G+ A+ A GASVVV+D+ ++ AA+ VV
Sbjct: 3 NSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDI---------NADAANHVVD 53
Query: 61 EIRSKGGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDT 114
EI+ GG+A + + + + A+ G++DI++NNAG K F +
Sbjct: 54 EIQQLGGQAFACRCDITSEQEL---SALADFAISKLGKVDILVNNAGGGGPKPF-DMPMA 109
Query: 115 DWQLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGL 174
D++ ++++ F +S+ P M+K G ++ S + N +Y+++K A L
Sbjct: 110 DFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHL 169
Query: 175 SNTLSIEGEKNNIHCNVIVPTA-ASRLTEDILPP 207
++ + + NI N I P A + + ++ P
Sbjct: 170 VRNMAFDLGEKNIRVNGIAPGAILTDALKSVITP 203
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 201 bits (514), Expect = 2e-65
Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 14/206 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ VAIVTGA AG+GR+ A A+ GASVVV DL S+ A+ V A IR
Sbjct: 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDL---------KSEGAEAVAAAIRQA 59
Query: 66 GGKAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
GGKA+ N + +++ AL+ FG+I +++NNAG K F + +D++ +
Sbjct: 60 GGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPF-DMPMSDFEWAFKL 118
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
+L FR+S+ A PHM+K G ++ +S +G N A+Y ++K A+ L+ ++ +
Sbjct: 119 NLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDV 178
Query: 183 EKNNIHCNVIVPTA-ASRLTEDILPP 207
I N I P A + +L P
Sbjct: 179 GPMGIRVNAIAPGAIKTDALATVLTP 204
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 199 bits (509), Expect = 3e-64
Identities = 62/196 (31%), Positives = 91/196 (46%), Gaps = 6/196 (3%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGK---SSKAADTVVAEI 62
F+G+ A++TG G+GRS+A+ LAE GA + + D D G ++ VA +
Sbjct: 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV 66
Query: 63 RSKGGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
G + + V D V A + G IDI I NAGI + W V
Sbjct: 67 EKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEV 126
Query: 120 QDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLS 179
+LTG F A P M K+NYGR+V +S G NF QA+Y ++K ++GL+ +
Sbjct: 127 IGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAA 186
Query: 180 IEGEKNNIHCNVIVPT 195
+ I N + P
Sbjct: 187 HDLVGYGITVNAVAPG 202
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 199 bits (509), Expect = 3e-64
Identities = 69/199 (34%), Positives = 102/199 (51%), Gaps = 8/199 (4%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDG----DGKSSKAADTVVAE 61
GRVA +TGA G GRS+A+ LA GA ++ D+ S + D
Sbjct: 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARL 71
Query: 62 IRSKGGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQL 118
+ +G KA+ V D ++V +E FGR+D+V+ NAG+L ++D W
Sbjct: 72 VEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDT 131
Query: 119 VQDVHLTGAFRVSRAAWPHMKKQ-NYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNT 177
V V+LTG +R RA P M + N G +V+ +S++GL G +YSA+K L L+NT
Sbjct: 132 VIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNT 191
Query: 178 LSIEGEKNNIHCNVIVPTA 196
L+IE + I N I P +
Sbjct: 192 LAIELGEYGIRVNSIHPYS 210
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 199 bits (509), Expect = 8e-64
Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 7/197 (3%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGK---SSKAADTVVAEI 62
R G+VA +TGA G GR++A+ LA+ GA +V DL Q+ S + V +
Sbjct: 43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLV 102
Query: 63 RSKGGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
+G + + V D +V AL FG IDI+++N GI ++D W +
Sbjct: 103 EEQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDI 162
Query: 120 QDVHLTGAFRVSRAAWPHMKKQ-NYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTL 178
+L GA+ RA P M ++ G ++ +S GL G GQ++Y+A+K + GL +L
Sbjct: 163 LQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSL 222
Query: 179 SIEGEKNNIHCNVIVPT 195
+ E ++NI N + P
Sbjct: 223 ANEVGRHNIRVNSVNPG 239
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 197 bits (503), Expect = 1e-63
Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 13/193 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+F+G+V +VTGAG +G + AL LAE G ++ + D+ + +A + A +R K
Sbjct: 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDM---------NREALEKAEASVREK 54
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRD-KSFARISDTDWQLVQD 121
G +A V + V + + +FG+ID + NNAG D+ V
Sbjct: 55 GVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLT 114
Query: 122 VHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE 181
+++TGAF V +A M QNYGR+V TAS +G+ G A Y +K A++ L+ T +++
Sbjct: 115 INVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALD 174
Query: 182 GEKNNIHCNVIVP 194
NI N I P
Sbjct: 175 LAPYNIRVNAISP 187
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 196 bits (502), Expect = 2e-63
Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 25/212 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
RF+ +V IVTG+G G+G++YA LA GA+VVV D+ +++AA+ V +I +
Sbjct: 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADI---------NAEAAEAVAKQIVAD 56
Query: 66 GGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGIL---RDKSFARISDTDW 116
GG A V + S + L FG ID ++NNA I + I +
Sbjct: 57 GGTAISVAVDVSDPESA---KAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYY 113
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSN 176
+ V+L GA +RA + M K+ G +V +S + Y AK+ + GL+
Sbjct: 114 KKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAW---LYSNYYGLAKVGINGLTQ 170
Query: 177 TLSIEGEKNNIHCNVIVP-TAASRLTEDILPP 207
LS E NI N I P + P
Sbjct: 171 QLSRELGGRNIRINAIAPGPIDTEANRTTTPK 202
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 195 bits (498), Expect = 8e-63
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 11/191 (5%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+ A+VTG+ G+G++ A+ LAE G ++V+N S KAA EI G
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYAR--------SKKAALETAEEIEKLG 53
Query: 67 GKAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVH 123
K + N ++ Q E FGR+D+ +NNA + + +T W +++
Sbjct: 54 VKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNIN 113
Query: 124 LTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGE 183
++ A M+K G +V +S + +K AL L+ L++E
Sbjct: 114 AKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELS 173
Query: 184 KNNIHCNVIVP 194
I N +
Sbjct: 174 PKQIIVNAVSG 184
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 193 bits (494), Expect = 3e-62
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 13/193 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+V IVTGAG+G+GR+ A A + VV +L + +V E+R
Sbjct: 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVEL---------LEDRLNQIVQELRGM 54
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRD-KSFARISDTDWQLVQD 121
G + + V + V+ E + RID++ NNAGI+ A +SD W+ V
Sbjct: 55 GKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLA 114
Query: 122 VHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE 181
V+L AF SRA P M KQ G +V TAS +G+ G F A Y+ AK L+GL+ +++
Sbjct: 115 VNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAH 174
Query: 182 GEKNNIHCNVIVP 194
I ++P
Sbjct: 175 YGDQGIRAVAVLP 187
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 195 bits (498), Expect = 3e-62
Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 8/199 (4%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDG---DGKSSKAADTVVAEI 62
+ +G+VA +TGA G GRS+A+ LA GA ++ D+ Q DG + V ++
Sbjct: 25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQV 84
Query: 63 RSKGGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRD-KSFARISDTDWQL 118
+ G + + + V D D V + GR+DIV+ NA + + R+ W+
Sbjct: 85 EALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRD 144
Query: 119 VQDVHLTGAFRVSRAAWPHM-KKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNT 177
+ DV+L GA+ +R A PH+ + G +V T+S GL G NY A+K L GL T
Sbjct: 145 MIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRT 204
Query: 178 LSIEGEKNNIHCNVIVPTA 196
+++E NI N++ P++
Sbjct: 205 MALELGPRNIRVNIVCPSS 223
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 193 bits (494), Expect = 4e-62
Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 18/196 (9%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+G+V ++TG+ GLG+S A+ A A VVVN A++V+ EI+
Sbjct: 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS--------KEDEANSVLEEIKKV 55
Query: 66 GGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
GG+A V + V +VQ+A++ FG++D++INNAG+ S +S +DW V
Sbjct: 56 GGEAIAVKGDVTVESDV---INLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKV 112
Query: 120 QDVHLTGAFRVSRAAWPHMKKQNY-GRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTL 178
D +LTGAF SR A + + + G ++ +S + +Y+A+K + ++ TL
Sbjct: 113 IDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETL 172
Query: 179 SIEGEKNNIHCNVIVP 194
++E I N I P
Sbjct: 173 ALEYAPKGIRVNNIGP 188
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 193 bits (494), Expect = 4e-62
Identities = 53/199 (26%), Positives = 100/199 (50%), Gaps = 8/199 (4%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDG----DGKSSKAADTVVAE 61
+ +GRVA +TGA G GR++A+ +A GA ++ D+ G+ D S V
Sbjct: 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRL 67
Query: 62 IRSKGGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQL 118
+ + + V D D K+V + GR+DI++ NAG+ +++ I+ D++
Sbjct: 68 VEAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRD 127
Query: 119 VQDVHLTGAFRVSRAAWPHMKKQ-NYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNT 177
V D+++TG + A P + + G +++ +S +G+ +Y+A+K A+ GL+
Sbjct: 128 VMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARA 187
Query: 178 LSIEGEKNNIHCNVIVPTA 196
+ E K++I N + P
Sbjct: 188 FAAELGKHSIRVNSVHPGP 206
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 193 bits (492), Expect = 1e-61
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 15/195 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
VA++TGAG+G+GR+ AL LA G +V + + V EI
Sbjct: 25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGR---------TRTEVEEVADEIVGA 75
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRD-KSFARISDTDWQLVQD 121
GG+A+ V D V+ + FG +DIV+ NAGI + +W
Sbjct: 76 GGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIA 135
Query: 122 VHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGL--LGNFGQANYSAAKMALVGLSNTLS 179
V+L G F P++K++ G +V+ +S +G G Y+A K A V + L+
Sbjct: 136 VNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLA 195
Query: 180 IEGEKNNIHCNVIVP 194
+E K++I N + P
Sbjct: 196 LELGKHHIRVNAVCP 210
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 191 bits (488), Expect = 2e-61
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 16/191 (8%)
Query: 4 QVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIR 63
+ F G+ VTGAG G+G + AL E GA V D ++ +++ D
Sbjct: 2 HMDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMD------- 54
Query: 64 SKGGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVH 123
V + V ++ Q L R+D ++N AGILR + ++S DWQ V+
Sbjct: 55 ------VADAAQV---AQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVN 105
Query: 124 LTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGE 183
+ GAF + + ++Q G +V AS++ G + Y A+K AL L+ ++ +E
Sbjct: 106 VGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELA 165
Query: 184 KNNIHCNVIVP 194
+ + CNV+ P
Sbjct: 166 GSGVRCNVVSP 176
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 191 bits (487), Expect = 4e-61
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 14/204 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VA+VTGA G+G + A L GA VV+ + V EI +
Sbjct: 26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTAR---------DVEKLRAVEREIVAA 76
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILR-DKSFARISDTDWQLVQD 121
GG+A + + D L GR D+++NNAG+ + +W +
Sbjct: 77 GGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIA 136
Query: 122 VHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE 181
V+L + + RA P M G ++ +S +G A Y+A+K L GL + + E
Sbjct: 137 VNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEE 196
Query: 182 GEKNNIHCNVIVPTA-ASRLTEDI 204
++ + +++ P + + +
Sbjct: 197 LRQHQVRVSLVAPGSVRTEFGVGL 220
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 190 bits (485), Expect = 5e-61
Identities = 35/188 (18%), Positives = 73/188 (38%), Gaps = 15/188 (7%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
+A+VT A G + L + G +VV +D + AA+ E + G A
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDAS--------FADAAERQRFESENPGTIA 53
Query: 70 VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARI---SDTDWQLVQDVHLTG 126
+ + +++V L++ ID +++N I R + + S+ D + + +
Sbjct: 54 L----AEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIF 109
Query: 127 AFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNN 186
+ ++A ++ ++ S+ G Y A+ A V L + + ++
Sbjct: 110 PILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDG 169
Query: 187 IHCNVIVP 194
I I P
Sbjct: 170 ILLYAIGP 177
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 191 bits (487), Expect = 7e-61
Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 12/193 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ A++TG+ +G+G + A LA+ GA++V+N G + TV E+
Sbjct: 22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFG--------APDEIRTVTDEVAGL 73
Query: 66 -GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQD 121
G + + + +I + + FG DI++NNAG+ + W +
Sbjct: 74 SSGTVLHHPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIA 133
Query: 122 VHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE 181
V+L+ +F R A P MKK+ +GR++ AS GL+ + ++ Y AAK ++GL+ T+++E
Sbjct: 134 VNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALE 193
Query: 182 GEKNNIHCNVIVP 194
++ + N I P
Sbjct: 194 VAESGVTVNSICP 206
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 190 bits (485), Expect = 7e-61
Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
GR +VTG G+GR A + A GA+V V ++ V +
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRS--------TADIDACVADLDQLG 58
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
GK + V D + A+E FG ID+V NAG+ D A ++ + V
Sbjct: 59 SGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAV 118
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSG-LLGNFGQANYSAAKMALVGLSNTLSIE 181
++ G F +A + GR+V+T+S +G + G G ++Y A K A +G T +IE
Sbjct: 119 NVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIE 178
Query: 182 GEKNNIHCNVIVP 194
+ I N I+P
Sbjct: 179 LAPHKITVNAIMP 191
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 190 bits (484), Expect = 1e-60
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 21/199 (10%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R A++T GLG+ L +G SV V + A +T+ +
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHS--------DTTAMETMKETYKDV 55
Query: 66 GGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAG--ILRDKSFARISDTDWQ 117
+ V + KIV+ A+ +FG+ID +INNAG + K + +W
Sbjct: 56 EERLQFVQADVTKKEDL---HKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWN 112
Query: 118 LVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNS--GLLGNFGQANYSAAKMALVGLS 175
+ +LT F + + P M+KQN+GR++ G ++ ++AAK+ LV L+
Sbjct: 113 EMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLT 172
Query: 176 NTLSIEGEKNNIHCNVIVP 194
T++ E + I N++ P
Sbjct: 173 KTVAYEEAEYGITANMVCP 191
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 189 bits (483), Expect = 1e-60
Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 15/195 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R D RVAIVTG +G + LAE GA V++ DL A V ++R +
Sbjct: 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADL---------DEAMATKAVEDLRME 60
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGI-LRDKSFARISDTDWQLVQD 121
G V + + V++ E GR+DI++ AGI + + ++D W D
Sbjct: 61 GHDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVD 120
Query: 122 VHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNF--GQANYSAAKMALVGLSNTLS 179
++L G FR +A M +Q G +V S SGL+ N QA Y+A+K + +L+
Sbjct: 121 INLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLA 180
Query: 180 IEGEKNNIHCNVIVP 194
E + I N + P
Sbjct: 181 AEWAPHGIRANAVAP 195
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 189 bits (482), Expect = 1e-60
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 22/196 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R G+ A+VTGA G+G++ A LA GA+V+V+D+ +++ A A I
Sbjct: 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDI---------NAEGAKAAAASI--- 50
Query: 66 GGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
G KA + + SV + G IDI++NNA I+ ++ + W+ +
Sbjct: 51 GKKARAIAADISDPGSV---KALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKI 107
Query: 120 QDVHLTGAFRVSRAAWPHMKKQN-YGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTL 178
DV+LTG F V+RA M+ GR++ ASN+ G A Y AAK ++G + L
Sbjct: 108 IDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRAL 167
Query: 179 SIEGEKNNIHCNVIVP 194
+ E K NI N + P
Sbjct: 168 ATELGKYNITANAVTP 183
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 189 bits (483), Expect = 2e-60
Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 12/209 (5%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+ +TGA G+G + AL A GA+V + + K + A + +
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSA--VANPKLPGTIHSAAAAVNAA 60
Query: 66 GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
GG+ + + + D++ V ++ FG IDI++NNA + + + L+Q V
Sbjct: 61 GGQGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQV 120
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNF--GQANYSAAKMALVGLSNTLSI 180
+ G+F ++A PH+ + ++ A L + Y+ AKM + ++ L+
Sbjct: 121 NARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAA 180
Query: 181 EGEKNNIHCNVIVP-----TAASRLTEDI 204
E + N + P T A + +
Sbjct: 181 EFGPQGVAINALWPRTVIATDAINMLPGV 209
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 189 bits (482), Expect = 2e-60
Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+V +++G G LG + A AE+GA +V+ + + + V ++
Sbjct: 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAAR---------TVERLEDVAKQVTDT 58
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGIL-RDKSFARISDTDWQLVQD 121
G +A+ + D +V ++ +GR+D+VINNA + K FA + + +
Sbjct: 59 GRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIE 118
Query: 122 VHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE 181
+ + GA R+ + P + +++ G +V S Y AK AL+ +S TL+ E
Sbjct: 119 LTVFGALRLIQGFTPAL-EESKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATE 177
Query: 182 GEKNNIHCNVIVP 194
+ I N ++P
Sbjct: 178 LGEKGIRVNSVLP 190
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 188 bits (481), Expect = 3e-60
Identities = 46/198 (23%), Positives = 92/198 (46%), Gaps = 13/198 (6%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ + + +VA+VT + G+G + A LA+ GA VVV+ + D VA
Sbjct: 6 VERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSR---------KQENVDRTVA 56
Query: 61 EIRSKGGKAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRD-KSFARISDTDW 116
++ +G + D +++V A+ G +DI+++NA + + ++ W
Sbjct: 57 TLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVW 116
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSN 176
+ V++ +++A P M+K+ G +++ +S Y+ +K AL+GL+
Sbjct: 117 DKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTK 176
Query: 177 TLSIEGEKNNIHCNVIVP 194
L++E NI N + P
Sbjct: 177 NLAVELAPRNIRVNCLAP 194
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 188 bits (480), Expect = 3e-60
Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 14/190 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R + ++TGA G+GR+ L A+ GA +V D+ + +
Sbjct: 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDI---------EEGPLREAAEAVGAH 52
Query: 66 GGKA-VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHL 124
V + SV ++ AL + GR+D V++ AGI RD ++ DW+LV V+L
Sbjct: 53 PVVMDVADPASV---ERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNL 109
Query: 125 TGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEK 184
TG+F V++AA M+++N G +V+TAS LGN GQANY+A+ +VGL+ TL++E +
Sbjct: 110 TGSFLVAKAASEAMREKNPGSIVLTASRVY-LGNLGQANYAASMAGVVGLTRTLALELGR 168
Query: 185 NNIHCNVIVP 194
I N + P
Sbjct: 169 WGIRVNTLAP 178
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 188 bits (480), Expect = 3e-60
Identities = 64/191 (33%), Positives = 100/191 (52%), Gaps = 14/191 (7%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G+ A+VTG+ +G+G A +LA GA++V+N G +AEI G
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFG-----------DPAPALAEIARHG 50
Query: 67 GKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVH 123
KAV + + D +I A FG +DI++NNAGI + W + ++
Sbjct: 51 VKAVHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALN 110
Query: 124 LTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGE 183
L+ F +R A P M+ +N+GR++ AS GL+G+ G+A Y AAK +VGL+ + +E
Sbjct: 111 LSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETA 170
Query: 184 KNNIHCNVIVP 194
+N+ CN I P
Sbjct: 171 TSNVTCNAICP 181
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 188 bits (481), Expect = 4e-60
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 14/194 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
VA+VTG +G+G + LL E GA+V RDG+ + +R +
Sbjct: 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCA----RDGE-----RLRAAESALRQR 55
Query: 66 --GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
G + + V+D ++ + G I++NNAG R +FA +D W
Sbjct: 56 FPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEEL 115
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
+ RA P ++ + +V S SAA+ + L +++
Sbjct: 116 QLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAF 175
Query: 181 EGEKNNIHCNVIVP 194
E + N I+
Sbjct: 176 EFAPKGVRVNGILI 189
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 188 bits (480), Expect = 4e-60
Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 21/197 (10%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VA++TG+ +G+G + A A+ GA +V+ R D ++ K
Sbjct: 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVA----RQVD-----RLHEAARSLKEK 54
Query: 66 GGKAVPNYNSVVDGD--------KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQ 117
G V V D +V++ +FG DI++NNAG +++ +D WQ
Sbjct: 55 FGVRV----LEVAVDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQ 110
Query: 118 LVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNT 177
++ + A R++R P M+ + G ++ AS + + + Y+ K AL+ S T
Sbjct: 111 FYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKT 170
Query: 178 LSIEGEKNNIHCNVIVP 194
L+ E K+NI N I P
Sbjct: 171 LATEVIKDNIRVNCINP 187
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 188 bits (481), Expect = 5e-60
Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 14/192 (7%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
+ A VTG +G+G + A LA RG +V +K V +R+ G
Sbjct: 23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCAR---------DAKNVSAAVDGLRAAGH 73
Query: 68 KAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHL 124
+ V D++ V A+E FG I I++N+AG A + D W V D +L
Sbjct: 74 DVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNL 133
Query: 125 TGAFRVSRAAWPH--MKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
TG FRV+R M++ +GR+V AS G G A Y+A+K +VG + ++ E
Sbjct: 134 TGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFEL 193
Query: 183 EKNNIHCNVIVP 194
K I N + P
Sbjct: 194 AKTGITVNAVCP 205
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 188 bits (480), Expect = 6e-60
Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 22/217 (10%)
Query: 1 MPEQVRFDGRVAIVTGA-GAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVV 59
+ G+V +VT A G G+G + A GA VV++D +
Sbjct: 14 IDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDY---------HERRLGETR 64
Query: 60 AEIRSKG-GKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARIS 112
++ G G+ V + +V D ++ +E GR+D+++NNAG+ ++
Sbjct: 65 DQLADLGLGRVEAVVCDVTSTEAV---DALITQTVEKAGRLDVLVNNAGLGGQTPVVDMT 121
Query: 113 DTDWQLVQDVHLTGAFRVSRAAWPHMKKQNY-GRLVMTASNSGLLGNFGQANYSAAKMAL 171
D +W V +V LT R +RAA + + ++ G +V AS G Q++Y+AAK +
Sbjct: 122 DEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGV 181
Query: 172 VGLSNTLSIEGEKNNIHCNVIVP-TAASRLTEDILPP 207
+ L+ +IE + + N + P A + E
Sbjct: 182 MALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSSS 218
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 188 bits (479), Expect = 7e-60
Identities = 52/189 (27%), Positives = 98/189 (51%), Gaps = 10/189 (5%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G+ A+VTG+ AG+G++ A L GA+V++N G+ + + + EIR++
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLIN---------GRREENVNETIKEIRAQY 58
Query: 67 GKAVPNYNSV-VDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
A+ + ++ Q +E + ++DI+INN GI + I D DW + +V++
Sbjct: 59 PDAILQPVVADLGTEQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIM 118
Query: 126 GAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKN 185
R++R+ M ++ GR++ AS + ++ + A+YSA K + LS +L+
Sbjct: 119 SGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGT 178
Query: 186 NIHCNVIVP 194
N+ N I+P
Sbjct: 179 NVTVNTIMP 187
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 187 bits (477), Expect = 9e-60
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 12/192 (6%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK- 65
G+VA+VTG+ +G+G A LA +GA +V+N G + + V A + ++
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFG--------DAAEIEKVRAGLAAQH 53
Query: 66 GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G K + + + G+ + V A+ GRIDI++NNAGI W + +
Sbjct: 54 GVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILAL 113
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
+L+ F + AA PHMKKQ +GR++ AS GL+ + ++ Y AAK +VG + ++E
Sbjct: 114 NLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALET 173
Query: 183 EKNNIHCNVIVP 194
I N I P
Sbjct: 174 AGQGITANAICP 185
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 186 bits (476), Expect = 1e-59
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 17/201 (8%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAE 61
GRV +VTGA G+G + A A GASVV+ ++ + V +
Sbjct: 7 AHPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLG---------RTEASLAEVSDQ 57
Query: 62 IRSKGGKAVPNYNSVVDG------DKIVQTALENFGRIDIVINNAGILRDKS-FARISDT 114
I+S G ++ ++ FGR+D +++NA I+ ++ ++ D
Sbjct: 58 IKSAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDE 117
Query: 115 DWQLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGL 174
D+ V V++ F ++RA P +K+ + T+S+ G G Y +K A GL
Sbjct: 118 DFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFATEGL 177
Query: 175 SNTLSIE-GEKNNIHCNVIVP 194
TL+ E + N I P
Sbjct: 178 MQTLADELEGVTAVRANSINP 198
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 187 bits (478), Expect = 1e-59
Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 14/194 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
D VA+VTGA +G+G A L + G V V + T + E+R
Sbjct: 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCAR---------GEEGLRTTLKELREA 69
Query: 66 GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G +A V +I V +E +G +D+++NNAG + A ++D W V +
Sbjct: 70 GVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVET 129
Query: 123 HLTGAFRVSRAAWPH--MKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
+LTG FRV++ M ++ GR+V AS G G A YSA+K +VG + L +
Sbjct: 130 NLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGL 189
Query: 181 EGEKNNIHCNVIVP 194
E + I N + P
Sbjct: 190 ELARTGITVNAVCP 203
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 186 bits (475), Expect = 2e-59
Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 14/190 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
F G+ +VTG G+GR+ A A GA V + DL V I
Sbjct: 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDL----------RPEGKEVAEAIGGA 52
Query: 66 GGKA-VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHL 124
+ + + + V+ A GR+D+++NNA I S + +W+ V +V+L
Sbjct: 53 FFQVDLEDERER---VRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNL 109
Query: 125 TGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEK 184
T +S A M+K G +V AS GL A Y+A+K LV L+ +L+++
Sbjct: 110 TAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAP 169
Query: 185 NNIHCNVIVP 194
I N + P
Sbjct: 170 LRIRVNAVAP 179
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 186 bits (476), Expect = 2e-59
Identities = 59/195 (30%), Positives = 88/195 (45%), Gaps = 10/195 (5%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M GR AIVTG G+G + A L + GA+V + DL AA VVA
Sbjct: 4 MAGIFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADL---------DVMAAQAVVA 54
Query: 61 EIRSKGGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
+ + G + D +Q A++ G D++ NAG+ + I+D +W
Sbjct: 55 GLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNF 114
Query: 121 DVHLTGAFRVSRAAWPHMKKQ-NYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLS 179
DV+ G F ++ A H G +V TAS + +G A+YSA+K A+ G + L+
Sbjct: 115 DVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALA 174
Query: 180 IEGEKNNIHCNVIVP 194
E NI N + P
Sbjct: 175 REMAPKNIRVNCVCP 189
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 186 bits (475), Expect = 2e-59
Identities = 61/192 (31%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R G+ +VTGA +G+GR+ L A GAS+V D + + +
Sbjct: 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDRE------------ERLLAEAVAAL 50
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
+A+ V D + ALE FGR+ V + AG+ + W+ V V
Sbjct: 51 EAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRV 110
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
+LTG+F V+R A +++ G LV+T S +G LG FG A+Y+A K+ +VGL+ TL++E
Sbjct: 111 NLTGSFLVARKAGEVLEE--GGSLVLTGSVAG-LGAFGLAHYAAGKLGVVGLARTLALEL 167
Query: 183 EKNNIHCNVIVP 194
+ + NV++P
Sbjct: 168 ARKGVRVNVLLP 179
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 186 bits (474), Expect = 3e-59
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 13/189 (6%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
+VA+VTGAG G+G++ AL L + G +V + D + A V +EI GG A
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADY---------NDATAKAVASEINQAGGHA 53
Query: 70 VPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTG 126
V V D D++ V+ A + G D+++NNAG+ I+ V ++++ G
Sbjct: 54 VAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKG 113
Query: 127 AFRVSRAAWPHMKKQNY-GRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKN 185
+AA KK+ + G+++ S +G +GN A YS++K A+ GL+ T + +
Sbjct: 114 VIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPL 173
Query: 186 NIHCNVIVP 194
I N P
Sbjct: 174 GITVNGYCP 182
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 185 bits (472), Expect = 4e-59
Identities = 67/195 (34%), Positives = 109/195 (55%), Gaps = 17/195 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ G+ AIVTG+ GLG++ A L GA++V+N +S + D E ++
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSP--------ASTSLDATAEEFKAA 53
Query: 66 GGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
G V N V + +V+TA++ FGRIDI++NNAGI RD ++S+ DW V
Sbjct: 54 GINVVVAKGDVKNPEDV---ENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDV 110
Query: 120 QDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLS 179
+ +L A+ ++A M KQ G+++ S +G++GN GQANY+A+K L+G + +++
Sbjct: 111 LNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIA 170
Query: 180 IEGEKNNIHCNVIVP 194
E I+CN + P
Sbjct: 171 KEFAAKGIYCNAVAP 185
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 186 bits (475), Expect = 5e-59
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 12/193 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R +VTG G+GR A + A GA+V V + +
Sbjct: 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARS--------PRELSSVTAELGELG 89
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G + V D +T ++ FG +D+V NAGI + ++ V DV
Sbjct: 90 AGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDV 149
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSG-LLGNFGQANYSAAKMALVGLSNTLSIE 181
++ G +A + GR+++T+S +G + G G ++Y A+K A +G T +IE
Sbjct: 150 NVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIE 209
Query: 182 GEKNNIHCNVIVP 194
+ N I+P
Sbjct: 210 LAPRGVTVNAILP 222
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 185 bits (471), Expect = 7e-59
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 11/190 (5%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
+VA+VTG G+GR + LA G + V DL Q + A + I + K
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEE-------QAAETIKLIEAADQK 54
Query: 69 AVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
AV V D + A E G D+++NNAGI + K +++ D + + V++
Sbjct: 55 AVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVF 114
Query: 126 GAFRVSRAAWPHMKKQNY-GRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEK 184
F +AA + G+++ AS + + G + YS K A+ GL+ + E
Sbjct: 115 SVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAP 174
Query: 185 NNIHCNVIVP 194
N P
Sbjct: 175 KGHTVNAYAP 184
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 185 bits (472), Expect = 9e-59
Identities = 81/194 (41%), Positives = 109/194 (56%), Gaps = 17/194 (8%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
R+A+VTGA G+GR+ AL LA GA V VN S+ AAD VVA I + G
Sbjct: 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYAS--------SAGAADEVVAAIAAAG 77
Query: 67 GKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
G+A V + V + + +E +GR+D+++NNAGI RD R+ DWQ V
Sbjct: 78 GEAFAVKADVSQESEV---EALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVL 134
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
D++L G F SRAA M KQ GR++ AS G +GN GQANYSAAK ++GL+ T++
Sbjct: 135 DLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAK 194
Query: 181 EGEKNNIHCNVIVP 194
E I N + P
Sbjct: 195 ELASRGITVNAVAP 208
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 184 bits (469), Expect = 1e-58
Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 17/200 (8%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAE 61
P+Q + R+ +VTGA G+GR A+ A GA+V++ ++ + V +
Sbjct: 5 PKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLG---------RNEEKLRQVASH 55
Query: 62 IRSKGGKAVPNYNSVVDG------DKIVQTALENFGRIDIVINNAGILRDKS-FARISDT 114
I + G+ + + ++ Q N+ R+D V++NAG+L D + +
Sbjct: 56 INEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQ 115
Query: 115 DWQLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGL 174
WQ V V++ F +++A P + K + G LV T+S+ G G Y+A+K A G+
Sbjct: 116 VWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGM 175
Query: 175 SNTLSIEGEKNNIHCNVIVP 194
L+ E ++ + N I P
Sbjct: 176 MQVLADEYQQ-RLRVNCINP 194
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 185 bits (471), Expect = 2e-58
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 23/215 (10%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ +GR+A+VTG G G+GR A L+ G SVV+ D
Sbjct: 25 AQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGR---------RPDVLDAAAG 75
Query: 61 EIRSKGGKA-------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDK-SFARIS 112
EI + G V + + V + F R+D+++NNAG ++
Sbjct: 76 EIGGRTGNIVRAVVCDVGDPDQV---AALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVT 132
Query: 113 DTDWQLVQDVHLTGAFRVSRAAWPHMKKQN--YGRLVMTASNSGLLGNFGQANYSAAKMA 170
W + +LTGAF ++ A+ MK Q GR++ S S A Y+A K A
Sbjct: 133 FEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHA 192
Query: 171 LVGLSNTLSIEGEKNNIHCNVIVP-TAASRLTEDI 204
+ GL+ + +++G ++I C I AA+ +T +
Sbjct: 193 ITGLTKSTALDGRMHDIACGQIDIGNAATDMTARM 227
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 185 bits (471), Expect = 2e-58
Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 12/203 (5%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGK-------SSKAADTV 58
R +G+VA VTGA G GRS+A+ LA+ GA ++ D+ + +
Sbjct: 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAET 67
Query: 59 VAEIRSKGGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRD-KSFARISDT 114
++ + V V D D V + +E GR+DI++ NAGI + + S+
Sbjct: 68 ADLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEE 127
Query: 115 DWQLVQDVHLTGAFRVSRAAWPHMKKQ-NYGRLVMTASNSGLLGNFGQANYSAAKMALVG 173
DW + D++L G ++ +A PHM G +++T+S GL +Y AAK +VG
Sbjct: 128 DWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVG 187
Query: 174 LSNTLSIEGEKNNIHCNVIVPTA 196
L +E ++ I N + PT
Sbjct: 188 LMRAFGVELGQHMIRVNSVHPTH 210
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 183 bits (467), Expect = 3e-58
Identities = 74/194 (38%), Positives = 111/194 (57%), Gaps = 17/194 (8%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G+VA+VTGA G+GR+ A+ LA++GA+VVVN G + + A+ VV EI+ G
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAG--------NEQKANEVVDEIKKLG 53
Query: 67 GKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
A V N V +V+ ++ FG++DI++NNAG+ +D R+ + +W V
Sbjct: 54 SDAIAVRADVANAEDV---TNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVI 110
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
+ +L G F ++A M +Q +GR+V AS G+ GN GQANY AAK ++GL+ T +
Sbjct: 111 NTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAK 170
Query: 181 EGEKNNIHCNVIVP 194
E NI N I P
Sbjct: 171 ELASRNITVNAIAP 184
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 182 bits (465), Expect = 6e-58
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 11/192 (5%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R+A VTG G+G S L + G VV +S + + ++
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGP--------NSPRRVKWLEDQKAL 61
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G + +V D D + G ID+++NNAGI RD F +++ DWQ V D
Sbjct: 62 GFDFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDT 121
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
+LT F V++ M ++ +GR++ +S +G G FGQ NYS AK + G + +L+ E
Sbjct: 122 NLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEV 181
Query: 183 EKNNIHCNVIVP 194
+ N + P
Sbjct: 182 ATKGVTVNTVSP 193
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 181 bits (463), Expect = 8e-58
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 17/191 (8%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
V +VTGA G+G++ AL L + G V+VN S+KAA+ V +I + GG+A
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYAR--------SAKAAEEVSKQIEAYGGQA 53
Query: 70 ------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVH 123
V V + +++TA++ +G ID+V+NNAGI RD R+ + W V D++
Sbjct: 54 ITFGGDVSKEADV---EAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLN 110
Query: 124 LTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGE 183
LTG F ++AA M K+ GR++ AS GL+GN GQANY+AAK ++G S T + EG
Sbjct: 111 LTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGA 170
Query: 184 KNNIHCNVIVP 194
NI+ NV+ P
Sbjct: 171 SRNINVNVVCP 181
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 183 bits (466), Expect = 9e-58
Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 14/221 (6%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ G A+VTG G+G + LA GA V ++ K D +
Sbjct: 13 NEGRWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCS---------RNEKELDECLE 63
Query: 61 EIRSKGGKAVPNYNSVVDGD---KIVQTALENF-GRIDIVINNAGILRDKSFARISDTDW 116
R KG + ++ K++QT F G+++I++NNAG++ K ++ D+
Sbjct: 64 IWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDY 123
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSN 176
++ + A+ +S+ A+P +K G ++ +S +G + YSA+K A+ ++
Sbjct: 124 NIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTK 183
Query: 177 TLSIEGEKNNIHCNVIVPTA-ASRLTEDILPPGSYPVKGFD 216
+L+ E K+NI N + P + L E + + + D
Sbjct: 184 SLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEID 224
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 182 bits (464), Expect = 1e-57
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 24/202 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+ ++TG+ G+G + A L A GA V ++ + D +A +R+
Sbjct: 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRK--------APANIDETIASMRAD 55
Query: 66 GGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAG-ILRDKSFARISDTDWQL 118
GG A + + ++V + FG ID++INNAG ++ K I DT +
Sbjct: 56 GGDAAFFAADLATSEAC---QQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDA 112
Query: 119 VQDVHLTGAFRVSRAAWPHMKKQ-----NYGRLVMTASNSGLLGNF-GQANYSAAKMALV 172
V D ++ ++ A PH+ ++ T S +G G G Y AAK L
Sbjct: 113 VMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLH 172
Query: 173 GLSNTLSIEGEKNNIHCNVIVP 194
+ K+ + N++ P
Sbjct: 173 NVHKNWVDFHTKDGVRFNIVSP 194
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 181 bits (462), Expect = 1e-57
Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 17/193 (8%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
+ A+VTGA G+GRS AL LAE G +V VN S + A+ VV EI++KG
Sbjct: 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNY--------AGSKEKAEAVVEEIKAKGV 54
Query: 68 KA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQD 121
+ V + + V +++ + FG +D+++NNAGI RD R+ + +W V D
Sbjct: 55 DSFAIQANVADADEV---KAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVID 111
Query: 122 VHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE 181
+L G F + A P M +Q G ++ +S G +GN GQANY A K ++GL+ + + E
Sbjct: 112 TNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARE 171
Query: 182 GEKNNIHCNVIVP 194
I N + P
Sbjct: 172 LASRGITVNAVAP 184
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 182 bits (464), Expect = 1e-57
Identities = 48/212 (22%), Positives = 93/212 (43%), Gaps = 14/212 (6%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
++ + +VTG G+G + A GA + ++ + ++
Sbjct: 6 QSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCA---------RNEYELNECLS 56
Query: 61 EIRSKGGKAVP---NYNSVVDGDKIVQTALENFG-RIDIVINNAGILRDKSFARISDTDW 116
+ + KG + + + + +K++QT FG ++DI+INN G +R K + D+
Sbjct: 57 KWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDF 116
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSN 176
+L A+ +S+ A P +K G ++ +S +G++ + YSA K AL L+
Sbjct: 117 SFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLAR 176
Query: 177 TLSIEGEKNNIHCNVIVPTA-ASRLTEDILPP 207
L+ E + I N + P A+ L E +
Sbjct: 177 NLACEWASDGIRANAVAPAVIATPLAEAVYDD 208
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 181 bits (461), Expect = 2e-57
Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 12/192 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
V GAG +G A A G +V R+G+ +VAEI +
Sbjct: 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGR----RNGE-----KLAPLVAEIEAA 54
Query: 66 GGKAVPNYNSVVDGDKIVQT--ALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVH 123
GG+ V + D++ A + +++ I N G + +D ++ V ++
Sbjct: 55 GGRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMA 114
Query: 124 LTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGE 183
F R + M G++ T + + L G G A +++AK L ++ +++ E
Sbjct: 115 CWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELM 174
Query: 184 KNNIH-CNVIVP 194
NIH ++I+
Sbjct: 175 PKNIHVAHLIID 186
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 181 bits (462), Expect = 2e-57
Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 20/196 (10%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+V I+TG +G+G+ A A+ GA VV+ + + + EI
Sbjct: 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGR---------TKEKLEEAKLEIEQFP 54
Query: 67 GKAVP------NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
G+ + N + + K+++ E FGRIDI+INNA +S W V
Sbjct: 55 GQILTVQMDVRNTDDI---QKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVI 111
Query: 121 DVHLTGAFRVSRAAWPHMKKQNY-GRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLS 179
++ L G F S+A + ++ G ++ + G + +AAK ++ ++ TL+
Sbjct: 112 NIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLA 171
Query: 180 IE-GEKNNIHCNVIVP 194
+E G K I N I P
Sbjct: 172 VEWGRKYGIRVNAIAP 187
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 182 bits (463), Expect = 3e-57
Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 9/223 (4%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAE 61
P + G+ ++G G+G + A +A GA+V + + K T E
Sbjct: 2 PGSMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSA--EPHPKLPGTIYTAAKE 59
Query: 62 IRSKGGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQL 118
I GG+A+P + DGD + V +E FG IDI +NNA + S + + L
Sbjct: 60 IEEAGGQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDL 119
Query: 119 VQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNF-GQANYSAAKMALVGLSNT 177
+ + + G + VS++ PHMK ++ ++ + L + Y AK + +
Sbjct: 120 MNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALG 179
Query: 178 LSIEGEKNNIHCNVIVP--TAASRLTEDILPPGSYPVKGFDPP 218
++ E I N + P T A+ +++L G + P
Sbjct: 180 IAEELRDAGIASNTLWPRTTVATAAVQNLL-GGDEAMARSRKP 221
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 182 bits (463), Expect = 3e-57
Identities = 63/202 (31%), Positives = 92/202 (45%), Gaps = 15/202 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDG---DGKSSKAADTVVAEI 62
G+VA +TGA G GR++A+ LA GA ++ DL Q + + V +
Sbjct: 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLV 69
Query: 63 RSKGGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
G + V V D + +Q L+ GR+DIV+ NAGI D W V
Sbjct: 70 EDIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAP----MSAGDDGWHDV 125
Query: 120 QDVHLTGAFRVSRAAWPHMKKQNY-GRLVMTASNSGLLG----NFGQANYSAAKMALVGL 174
DV+LTG + + A P + KQ G +V+ +S++GL G + G Y AAK +VGL
Sbjct: 126 IDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGL 185
Query: 175 SNTLSIEGEKNNIHCNVIVPTA 196
+ I N I P+
Sbjct: 186 MRVYANLLAGQMIRVNSIHPSG 207
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 182 bits (463), Expect = 3e-57
Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 18/194 (9%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+ +VA+VTGAG G+GR A +LA+ + V+ ++ K+ D+VV EI+S G
Sbjct: 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICI---------SRTQKSCDSVVDEIKSFG 92
Query: 67 GKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
++ V + +++ L +DI++NNAGI RD F R+ + +W+ V
Sbjct: 93 YESSGYAGDVSKKEEI---SEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVL 149
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
+L F +++ M YGR++ +S GL GN GQANYS++K ++G + +L+
Sbjct: 150 RTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAK 209
Query: 181 EGEKNNIHCNVIVP 194
E NI N I P
Sbjct: 210 ELASRNITVNAIAP 223
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 181 bits (461), Expect = 4e-57
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 26/211 (12%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
RVA VTG GLG + + L + G +V V+ + T + R G
Sbjct: 24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSE--------RNDHVSTWLMHERDAGR 75
Query: 68 KA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQD 121
V ++ S ++ + L +FG++D++INNAGI RD +F +++ DW V
Sbjct: 76 DFKAYAVDVADFESC---ERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMR 132
Query: 122 VHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE 181
L F V++ M ++ +GR+V S +G G FGQANY++AK + G + TL++E
Sbjct: 133 TDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALE 192
Query: 182 GEKNNIHCNVIVP-------TAASRLTEDIL 205
K I N + P A + +D+L
Sbjct: 193 TAKRGITVNTVSPGYLATAMVEA--VPQDVL 221
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 180 bits (460), Expect = 5e-57
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 25/203 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
F + IVTG G+G ++ +A GA+V V ++ A + +
Sbjct: 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRS--------AADAVEVTEKVGKEF 62
Query: 66 GGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
G K V N + V K +Q + G I +I NAG+ K ++ D+ V
Sbjct: 63 GVKTKAYQCDVSNTDIV---TKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFV 119
Query: 120 QDVHLTGAFRVSRAAWPHM-KKQNYGRLVMTASNSG-------LLGNFGQANYSAAKMAL 171
DV++ G F RA +KQ G +V+T+S S L G+ Q Y+++K A
Sbjct: 120 YDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAAC 179
Query: 172 VGLSNTLSIEGEKNNIHCNVIVP 194
L L+ E I N + P
Sbjct: 180 SNLVKGLAAEWASAGIRVNALSP 202
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 180 bits (460), Expect = 7e-57
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 16/197 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ VAIVTG G+G A LA G + + +G ++ V+AE+
Sbjct: 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIG--------DAEGVAPVIAELSGL 77
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDK--SFARISDTDWQLVQ 120
G + + + D V + FGRID ++NNAGI F + ++ +
Sbjct: 78 GARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIV 137
Query: 121 DVHLTGAFRVSRAAWPHMKK---QNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNT 177
V+L G ++A M + ++ S S ++ + + +Y +K L S
Sbjct: 138 GVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQG 197
Query: 178 LSIEGEKNNIHCNVIVP 194
L++ + I + P
Sbjct: 198 LALRLAETGIAVFEVRP 214
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 180 bits (458), Expect = 8e-57
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 17/191 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R +V ++TGA G+G +R VV +AD + +
Sbjct: 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRS--------IKPSADPDIHTVAGD 76
Query: 66 GGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
+ + D+IV+ +E FGRID ++NNAG+ K F ++ D+ V++
Sbjct: 77 ----ISKPETA---DRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVA 129
Query: 126 GAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQAN--YSAAKMALVGLSNTLSIEGE 183
G F +++ A M KQ G +V ++ G + S K L ++ +L++E
Sbjct: 130 GFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFS 189
Query: 184 KNNIHCNVIVP 194
++ + N + P
Sbjct: 190 RSGVRVNAVSP 200
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 179 bits (456), Expect = 1e-56
Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 12/189 (6%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
R A++TGA G+GR+ AL LAE G ++ ++ G++ + A+ V E R +G
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHY--------GQNREKAEEVAEEARRRGSPL 53
Query: 70 VPNYNSVV----DGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
V + + +V A E G +D ++NNAGI RD R+ D DW+ V + +L+
Sbjct: 54 VAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLS 113
Query: 126 GAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKN 185
FR +R A M K +GR+V S G+LGN GQANY A+K L+G + ++ E +
Sbjct: 114 AVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEYAQR 173
Query: 186 NIHCNVIVP 194
I N + P
Sbjct: 174 GITVNAVAP 182
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 180 bits (458), Expect = 1e-56
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VAIVTGAGAG+G + A LA+ G V+ D+ DGD AAD +I
Sbjct: 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADI----DGD-----AADAAATKI--- 73
Query: 66 GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G A V D +I V + FG +D ++ NAG++ S + D+ V +
Sbjct: 74 GCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAI 133
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
+L GA+ ++ A P M ++ G +V +S +G + G Y +K ++ LS + E
Sbjct: 134 NLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAEL 193
Query: 183 EKNNIHCNVIVP 194
+ I N ++P
Sbjct: 194 RSSGIRSNTLLP 205
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 179 bits (457), Expect = 1e-56
Identities = 56/189 (29%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
F+G+VA+VTGA G+G + L GA V V D A + ++R
Sbjct: 25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADR------AVAGIAADLHLPGDLREA 78
Query: 66 GGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
D + GR+DIV+NNAG++ +D DW L V++
Sbjct: 79 A-----------YADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVE 127
Query: 126 GAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKN 185
FR+ RAA P M G +V AS GL G A Y K AL L+ + ++
Sbjct: 128 APFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAPQ 187
Query: 186 NIHCNVIVP 194
I N + P
Sbjct: 188 GIRINAVCP 196
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 179 bits (456), Expect = 2e-56
Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 16/193 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R +G+ A++TG+ G+GR++A GA+V + D+ + A AEI
Sbjct: 5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADI---------DIERARQAAAEI--- 52
Query: 66 GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G A V D I + +E+ G +DI++NNA + I+ ++ + +
Sbjct: 53 GPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAI 112
Query: 123 HLTGAFRVSRAAWPHMKKQN-YGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE 181
++ G +AA M Q G+++ AS +G G A Y A K A++ L+ + ++
Sbjct: 113 NVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLD 172
Query: 182 GEKNNIHCNVIVP 194
K+ I+ N I P
Sbjct: 173 LIKHRINVNAIAP 185
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 179 bits (456), Expect = 2e-56
Identities = 61/198 (30%), Positives = 91/198 (45%), Gaps = 21/198 (10%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
RF RV ++TG G+GLGR+ A+ LA GA + + D+ SS+ + A +
Sbjct: 10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDV---------SSEGLEASKAAVLET 60
Query: 66 GGKA--------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGIL-RDKSFARISDTDW 116
A V + V + V E FGRID NNAGI + + ++
Sbjct: 61 APDAEVLTTVADVSDEAQV---EAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEF 117
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSN 176
V ++L G F M++Q G +V TAS G+ G Q+ Y+AAK +VGL+
Sbjct: 118 DKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTR 177
Query: 177 TLSIEGEKNNIHCNVIVP 194
++E + I N I P
Sbjct: 178 NSAVEYGRYGIRINAIAP 195
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 179 bits (457), Expect = 3e-56
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 21/208 (10%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDG---KSSKAADTVVAEI 62
R +V +VTG G GRS+A+ LAE GA +++ D+ + + +S+ + E+
Sbjct: 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEV 66
Query: 63 RSKGGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
G KA V D + + A+ FG++D+V+ NAGI A + +
Sbjct: 67 EKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLG--AHLPVQAFADA 124
Query: 120 QDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNF-----------GQANYSAAK 168
DV G AA P++ ++ T S +GL+ G A YS AK
Sbjct: 125 FDVDFVGVINTVHAALPYLTSG--ASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAK 182
Query: 169 MALVGLSNTLSIEGEKNNIHCNVIVPTA 196
+ + L+ + +I NVI PT
Sbjct: 183 QLVDSYTLQLAAQLAPQSIRANVIHPTN 210
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 178 bits (454), Expect = 3e-56
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 14/192 (7%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
RVAIVTGA +G G + A RG V DL + +T + K
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAE--------TLEETARTHWHAYADK 53
Query: 69 AVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDT---DWQLVQDV 122
+ V D + +E FG ID+++NNAGI + + T + V V
Sbjct: 54 VLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAV 113
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
++ G F RA PHM Q G +V AS + L+ G++ Y+ +K A++ L+ +++++
Sbjct: 114 NVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDY 173
Query: 183 EKNNIHCNVIVP 194
+ I CN + P
Sbjct: 174 AGSGIRCNAVCP 185
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 178 bits (454), Expect = 3e-56
Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 13/198 (6%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M + +G A+VTG G+G LA GASV ++ K + +
Sbjct: 1 MAGRWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCS---------RNQKELNDCLT 51
Query: 61 EIRSKGGKAVPNYNSVVDGD---KIVQTALENF-GRIDIVINNAGILRDKSFARISDTDW 116
+ RSKG K + + +++ T +F G+++I++NNAGI+ K + D+
Sbjct: 52 QWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDY 111
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSN 176
L+ ++ A+ +S A P +K G +V +S SG L +A Y A K A+ L+
Sbjct: 112 SLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTR 171
Query: 177 TLSIEGEKNNIHCNVIVP 194
L+ E K+NI N + P
Sbjct: 172 CLAFEWAKDNIRVNGVGP 189
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 178 bits (453), Expect = 3e-56
Identities = 38/186 (20%), Positives = 72/186 (38%), Gaps = 13/186 (6%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
AIVT G AL L+E G +V +D S K D + A +
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDE---------SFKQKDELEAFAETYPQLK 52
Query: 70 VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKS-FARISDTDWQLVQDVHLTGAF 128
+ ++++ +G++D++++N + + + D++ + F
Sbjct: 53 PMSEQEP---AELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPF 109
Query: 129 RVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNNIH 188
+ A MKK+ G ++ S + + Y++A+ L+N LS E + NI
Sbjct: 110 ALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIP 169
Query: 189 CNVIVP 194
I P
Sbjct: 170 VFAIGP 175
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 179 bits (456), Expect = 3e-56
Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 12/190 (6%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
G++A+VTGA G+G + A A+ GA++V N + + D +A ++ G
Sbjct: 33 KGKIALVTGASYGIGFAIASAYAKAGATIVFN---------DINQELVDRGMAAYKAAGI 83
Query: 68 KAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHL 124
A + +V G IDI++NNAGI+R ++ ++ V D+ L
Sbjct: 84 NAHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDL 143
Query: 125 TGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEK 184
F VS+A P M K+ +G+++ S LG + Y+AAK L L+ ++ E +
Sbjct: 144 NAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGE 203
Query: 185 NNIHCNVIVP 194
NI CN I P
Sbjct: 204 ANIQCNGIGP 213
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 178 bits (454), Expect = 4e-56
Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 18/194 (9%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
D +VAIVTGA G+GR+ AL LA RGA V+ + A+ + A + G
Sbjct: 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGT---------ATTEAGAEGIGAAFKQAG 76
Query: 67 GKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
+ V + +V D +V++ L+ FG +++++NNAGI +D+ R+ D +W V
Sbjct: 77 LEGRGAVLNVNDATAV---DALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVI 133
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
D +L FR+SRA M K GR+V S G GN GQ NY+AAK + G++ L+
Sbjct: 134 DTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAR 193
Query: 181 EGEKNNIHCNVIVP 194
E I N + P
Sbjct: 194 EIGSRGITVNCVAP 207
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 178 bits (454), Expect = 5e-56
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 21/198 (10%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+ A++TGA G+G+ AL AE GA V V S A V EI
Sbjct: 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAAR---------HSDALQVVADEIAGV 79
Query: 66 GGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
GGKA V + V ++ G IDI + NAGI+ ++ + ++Q +
Sbjct: 80 GGKALPIRCDVTQPDQV---RGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRI 136
Query: 120 QDVHLTGAFRVSRAAWPHMKKQNY-GRLVMTASNSGLLGNFGQ--ANYSAAKMALVGLSN 176
QD ++TG F ++AA M Q G ++ TAS SG + N Q ++Y +K A+V L+
Sbjct: 137 QDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTK 196
Query: 177 TLSIEGEKNNIHCNVIVP 194
+++E + I N + P
Sbjct: 197 AMAVELAPHQIRVNSVSP 214
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 177 bits (451), Expect = 7e-56
Identities = 62/194 (31%), Positives = 103/194 (53%), Gaps = 9/194 (4%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M + + +G+VA+VTGA G+G++ A LLAERGA V+ S A +
Sbjct: 1 MSQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGT---------ATSESGAQAISD 51
Query: 61 EIRSKGGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
+ G N + + +++ + FG +DI++NNAGI RD R+ + +W +
Sbjct: 52 YLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIM 111
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
+ +LT FR+S+A M K+ GR++ S G +GN GQANY+AAK ++G + +++
Sbjct: 112 ETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAR 171
Query: 181 EGEKNNIHCNVIVP 194
E + N + P
Sbjct: 172 EVASRGVTVNTVAP 185
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 177 bits (451), Expect = 1e-55
Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 21/201 (10%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R +A+VTGAG+G+GR+ ++ LA GA+V DL AA V +
Sbjct: 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDL---------DRAAAQETVRLLGGP 54
Query: 66 GGKAVPNYNSVV----------DGDKIVQTALENFGRI-DIVINNAGILRDKSFARISDT 114
G K P + +++ F R +V++ AGI +D+ +S+
Sbjct: 55 GSKEGPPRGNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSED 114
Query: 115 DWQLVQDVHLTGAFRVSRAAWPHMKKQ-NYGRLVMTASNSGLLGNFGQANYSAAKMALVG 173
DW V V+L G F V++AA + G ++ +S G +GN GQ NY+A+K ++G
Sbjct: 115 DWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIG 174
Query: 174 LSNTLSIEGEKNNIHCNVIVP 194
L+ T + E ++ I CN ++P
Sbjct: 175 LTQTAARELGRHGIRCNSVLP 195
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 177 bits (451), Expect = 2e-55
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 15/192 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ RV IVTG G+G+GR+ A L A+ GA VVV D+ + AA V EI
Sbjct: 24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADV---------NEDAAVRVANEI--- 71
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G KA V +V+ +GR+D+++NNAG + I + W + V
Sbjct: 72 GSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSV 131
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
++ G F S+ P M++ G ++ T S + + Y A+K A+ L+ ++++
Sbjct: 132 NVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDH 191
Query: 183 EKNNIHCNVIVP 194
K I N + P
Sbjct: 192 AKEGIRVNAVAP 203
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 177 bits (451), Expect = 2e-55
Identities = 44/198 (22%), Positives = 74/198 (37%), Gaps = 16/198 (8%)
Query: 4 QVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIR 63
Q+ F R +VTG G+G+G+ A L GASV++ R+ D V E+
Sbjct: 6 QLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVG----RNPD-----KLAGAVQELE 56
Query: 64 SKGGKAVPNYNSVVD------GDKIVQTALENFGRIDIVINNAGILRD-KSFARISDTDW 116
+ G D + V GR+ V++ AG + ++ W
Sbjct: 57 ALGANGGAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAW 116
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSN 176
+ D+++ G V + A M + G V +S + + Y K A+ L
Sbjct: 117 RRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQ 176
Query: 177 TLSIEGEKNNIHCNVIVP 194
+ E + + N I P
Sbjct: 177 LAADELGASWVRVNSIRP 194
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 176 bits (449), Expect = 2e-55
Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 11/197 (5%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ + +V ++ G LG A A ++V++ K S A+ +
Sbjct: 3 LTKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYH------QAKDSDTANKLKD 56
Query: 61 EIRSKGGKAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQ 117
E+ +G K + ++ + K+ A + FG++DI IN G + K S+ ++
Sbjct: 57 ELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFD 116
Query: 118 LVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNT 177
+ ++ A+ + A HM G ++ A++ + Y+ K + +
Sbjct: 117 AMDTINNKVAYFFIKQAAKHMNPN--GHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRA 174
Query: 178 LSIEGEKNNIHCNVIVP 194
S E K I N I P
Sbjct: 175 ASKELMKQQISVNAIAP 191
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 179 bits (455), Expect = 2e-55
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 8/199 (4%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+P R G +TGA G+G++ AL A+ GA++V+ K T
Sbjct: 37 LPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKT--AQPHPKLLGTIYTAAE 94
Query: 61 EIRSKGGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQ 117
EI + GGKA+P V D +I V+ A++ FG IDI++NNA + +
Sbjct: 95 EIEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLD 154
Query: 118 LVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNF--GQANYSAAKMALVGLS 175
L+ +V+ G + S+A P++KK ++ + L + Y+ AK +
Sbjct: 155 LMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYV 214
Query: 176 NTLSIEGEKNNIHCNVIVP 194
++ E K I N + P
Sbjct: 215 LGMAEEF-KGEIAVNALWP 232
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 176 bits (449), Expect = 2e-55
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 19/209 (9%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ ++AIVTGAG+G+GR+ A+ LA G V + R D A AEI
Sbjct: 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAG----RRLD-----ALQETAAEI--- 72
Query: 66 GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRD-KSFARISDTDWQLVQD 121
G A+ V D D + +E FGR+D++ NNAG ++ W+ V D
Sbjct: 73 GDDALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVD 132
Query: 122 VHLTGAFRVSRAAWPHMKKQN--YGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLS 179
+LTG F ++ A+ MK Q GR++ S S A Y+A K A+ GL+ + S
Sbjct: 133 TNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTS 192
Query: 180 IEGEKNNIHCNVIVP-TAASRLTEDILPP 207
++G ++I C I A + + + +
Sbjct: 193 LDGRVHDIACGQIDIGNADTPMAQKMKAG 221
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 177 bits (451), Expect = 2e-55
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 13/195 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
FDGR A+VTG +G+G + A A RGA +V++D+ D A + V +R +
Sbjct: 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDV----DQP-----ALEQAVNGLRGQ 78
Query: 66 GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G A V D++ A G +D+V +NAGI+ A+++ DW+ V D+
Sbjct: 79 GFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDI 138
Query: 123 HLTGAFRVSRAAWPHMKKQNY-GRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE 181
L G+ A P + +Q G + TAS +GL+ N G Y AK +VGL+ TL+ E
Sbjct: 139 DLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLARE 198
Query: 182 GEKNNIHCNVIVPTA 196
+ N I +V+ P
Sbjct: 199 VKPNGIGVSVLCPMV 213
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 176 bits (449), Expect = 2e-55
Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 27/199 (13%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+G+VA+VTGA G+GR++A L +GA V + D + +A A + +
Sbjct: 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDW---------NLEAGVQCKAALHEQ 54
Query: 66 --GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
K + V D + +++FGR+DI++NNAG+ +K +W+
Sbjct: 55 FEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEK--------NWEKTL 106
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRL---VMTASNSGLLGNFGQANYSAAKMALVGLSNT 177
++L + +M KQN G + +S +GL+ Q Y A+K +VG + +
Sbjct: 107 QINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRS 166
Query: 178 LSIEGE--KNNIHCNVIVP 194
++ + + N I P
Sbjct: 167 AALAANLMNSGVRLNAICP 185
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 175 bits (447), Expect = 3e-55
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 11/191 (5%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G+V++VTG+ G+GR+ A LA G++V++ +A G
Sbjct: 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTS--------GERAKAVAEEIANKYG 56
Query: 67 GKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVH 123
KA +++ + I + IDI++NNAGI RDK F R+S DW+ V V+
Sbjct: 57 VKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVN 116
Query: 124 LTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGE 183
LTG F V++ + M KQ +GR+V +S G GN GQ NYS K L+G + +L+ E
Sbjct: 117 LTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELA 176
Query: 184 KNNIHCNVIVP 194
N+ N + P
Sbjct: 177 PRNVLVNAVAP 187
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 176 bits (448), Expect = 3e-55
Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 13/205 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R DG+ A++TGA G+G A A GA +V++ RD + A
Sbjct: 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSG----RDVS----ELDAARRALGEQF 68
Query: 66 GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G + + D + A E FG +D+++NNAGI + + V
Sbjct: 69 GTDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAV 128
Query: 123 HLTGAFRVSRAAWPHMKKQ-NYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE 181
+L ++ A M G ++ AS + L Y +K LV + L+ E
Sbjct: 129 NLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARE 188
Query: 182 GEKNNIHCNVIVPTA-ASRLTEDIL 205
+ I N + PT + + + +
Sbjct: 189 LGPHGIRANSVCPTVVLTEMGQRVW 213
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 175 bits (446), Expect = 3e-55
Identities = 66/191 (34%), Positives = 98/191 (51%), Gaps = 12/191 (6%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+ +VA+VTGA G+G A LA +GA+VV S +A+ ++ KG
Sbjct: 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGT---------ATSQASAEKFENSMKEKG 53
Query: 67 GKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVH 123
KA ++ D + I IDI++NNAGI RD R+S+ +WQ V + +
Sbjct: 54 FKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTN 113
Query: 124 LTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGE 183
L+ FR+S+ M K+ +GR++ S G GN GQ NY AAK ++G S +L+ E
Sbjct: 114 LSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVA 173
Query: 184 KNNIHCNVIVP 194
NI NV+ P
Sbjct: 174 SRNITVNVVAP 184
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 176 bits (448), Expect = 3e-55
Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 23/203 (11%)
Query: 3 EQVRFDGRVAIVTGAGA--GLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+Q+ G+V +VTGA G+G A AE GA+V + ++ A+ V
Sbjct: 14 DQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYAS--------RAQGAEENVK 65
Query: 61 EIRSKGG-KA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISD 113
E+ G KA V +Y S +K+V+ + +FG+ID I NAG D S
Sbjct: 66 ELEKTYGIKAKAYKCQVDSYESC---EKLVKDVVADFGQIDAFIANAGATADSGILDGSV 122
Query: 114 TDWQLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNF--GQANYSAAKMAL 171
W V V L G F ++A H K++ G LV+TAS SG + NF Q +Y+ AK
Sbjct: 123 EAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGC 182
Query: 172 VGLSNTLSIEGEKNNIHCNVIVP 194
+ ++ +L+ E N I P
Sbjct: 183 IHMARSLANEWRD-FARVNSISP 204
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 176 bits (449), Expect = 3e-55
Identities = 65/194 (33%), Positives = 92/194 (47%), Gaps = 14/194 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R +G++AIVTGA +G+GR+ ALL A GA VVV + A + EI
Sbjct: 5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTAR---------NGNALAELTDEIAGG 55
Query: 66 GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGIL-RDKSFARISDTDWQLVQD 121
GG+A V D V+ A+ FG +D NNAG L + +S W+ D
Sbjct: 56 GGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLD 115
Query: 122 VHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLL-GNFGQANYSAAKMALVGLSNTLSI 180
+LT AF ++ P + G L T+S G G G A Y+A+K L+GL L++
Sbjct: 116 TNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAV 175
Query: 181 EGEKNNIHCNVIVP 194
E I N ++P
Sbjct: 176 ELGARGIRVNALLP 189
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 174 bits (443), Expect = 9e-55
Identities = 43/205 (20%), Positives = 90/205 (43%), Gaps = 18/205 (8%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGA------SVVVNDLGGQRDGDGKSSKAADTVVAEIR 63
+ ++TGAG G+GR+ AL A V+V +++ + + E R
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLS--------SRTAADLEKISLECR 54
Query: 64 SKGGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
++G + D ++ +E +G ID ++NNAG+ R + + +++ D+
Sbjct: 55 AEGALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTM 114
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
+ +L G F +++A + M++Q+ G + S + + Y +K GL T+ +
Sbjct: 115 NTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRL 174
Query: 181 EGEKNNIHCNVIVPTA-ASRLTEDI 204
K N+ + P A + + +
Sbjct: 175 YARKCNVRITDVQPGAVYTPMWGKV 199
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 175 bits (445), Expect = 1e-54
Identities = 59/196 (30%), Positives = 86/196 (43%), Gaps = 12/196 (6%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M GR A+VTGAG+G+GR+ A A GA V+ + V
Sbjct: 23 MTGPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWG----------RTDGVKEVAD 72
Query: 61 EIRSKGGKAVPNYNSVVDGDKIVQ--TALENFGRIDIVINNAGILRDKSFARISDTDWQL 118
EI GG A + D + L R+D+++NNAGI+ +S W+
Sbjct: 73 EIADGGGSAEAVVADLADLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWRE 132
Query: 119 VQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTL 178
V V+L A+ +SR+ M GR+V AS G A Y+A+K A+VGL+ L
Sbjct: 133 VLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRAL 192
Query: 179 SIEGEKNNIHCNVIVP 194
+ E + N + P
Sbjct: 193 ASEWAGRGVGVNALAP 208
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 174 bits (443), Expect = 1e-54
Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 18/188 (9%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
R IVTG G G+G+ L E G V D+ K + A+ +
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDI---------DEKRS----ADFAKERPNL 49
Query: 70 VPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTG 126
+ V D + V+ A+E RID+++NNA + + ++ + V L
Sbjct: 50 FYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKA 109
Query: 127 AFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNN 186
+ +SR + K GR++ AS Y++AK +V L++ L++ +
Sbjct: 110 PYELSRLCRDELIKN-KGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-D 167
Query: 187 IHCNVIVP 194
+ N I P
Sbjct: 168 VLVNCIAP 175
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 173 bits (442), Expect = 2e-54
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 15/192 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+ I+TG GLG A GA VV+ D+ + E+
Sbjct: 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADV---------LDEEGAATAREL--- 49
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G A + V + ++V A E FG +D ++NNAGI S ++ V ++
Sbjct: 50 GDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEI 109
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
+LTG F + P MK G +V +S +GL+G ++Y A+K + GLS ++E
Sbjct: 110 NLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVEL 169
Query: 183 EKNNIHCNVIVP 194
+ I N + P
Sbjct: 170 GTDRIRVNSVHP 181
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 174 bits (443), Expect = 3e-54
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 23/201 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
RF + I+TG+ G+GR+ A+L A+ GA+V + SS+ + I
Sbjct: 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGR---------SSERLEETRQIILKS 53
Query: 66 GGKAVPNYNSVV-------DGDKIVQTALENFGRIDIVINNAGILRDKSFARISD----T 114
G NSVV D+I+ + L+ FG+ID+++NNAG +F
Sbjct: 54 GVSE-KQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGID 112
Query: 115 DWQLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASN-SGLLGNFGQANYSAAKMALVG 173
+ ++L +++ PH+ G +V +S +G Y+ AK AL
Sbjct: 113 IYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQ 171
Query: 174 LSNTLSIEGEKNNIHCNVIVP 194
+ + +I+ K I N + P
Sbjct: 172 YTRSTAIDLAKFGIRVNSVSP 192
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 173 bits (441), Expect = 3e-54
Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+V IVTGA G+GR+ A + G+ V+ + D + +
Sbjct: 5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSI------HDPGEAKYDHIECD---- 54
Query: 66 GGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
V N + V + + +G I +++NNAGI +S +W+ + DV+L
Sbjct: 55 ----VTNPDQV---KASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLF 107
Query: 126 GAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKN 185
G + S+ A P+M + +V +S + + Y +K A++GL+ +++++
Sbjct: 108 GYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAP- 166
Query: 186 NIHCNVIVP 194
+ CN + P
Sbjct: 167 LLRCNAVCP 175
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 173 bits (440), Expect = 4e-54
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 21/198 (10%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
+G+V +VTGA G+GR AL L + GA+V + G+ V E +S GG
Sbjct: 4 NGQVCVVTGASRGIGRGIALQLCKAGATVYIT---------GRHLDTLRVVAQEAQSLGG 54
Query: 68 KAVPNYNSVVDGDKIV----QTALENFGRIDIVINNAGIL-------RDKSFARISDTDW 116
+ VP ++ Q E GR+D+++NNA R+K+F + W
Sbjct: 55 QCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMW 114
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSN 176
+ +V L G + S M G +V+ +S L Y K A L+
Sbjct: 115 DDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGS-LQYMFNVPYGVGKAACDKLAA 173
Query: 177 TLSIEGEKNNIHCNVIVP 194
+ E ++ + C + P
Sbjct: 174 DCAHELRRHGVSCVSLWP 191
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 173 bits (441), Expect = 4e-54
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 13/190 (6%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
+VAIVTGA G+G + A LA G +VV+N G + AA+ V +I + GG
Sbjct: 26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAG--------KAAAAEEVAGKIEAAGG 77
Query: 68 KAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHL 124
KA+ + + ++ TA E FG +D+++NNAGI+ + A D + V V+L
Sbjct: 78 KALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNL 137
Query: 125 TGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEK 184
G F R A + + GR++ +++ L + Y+AAK + +++ LS E
Sbjct: 138 KGTFNTLREAAQRL--RVGGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRG 195
Query: 185 NNIHCNVIVP 194
+I N + P
Sbjct: 196 RDITVNAVAP 205
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 173 bits (441), Expect = 8e-54
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 19/198 (9%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
RF G+ I+TG+ G+GRS A++ A+ GA V + + + +I
Sbjct: 23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGR---------NEDRLEETKQQILKA 73
Query: 66 GGKAVPNYNSVVD------GDKIVQTALENFGRIDIVINNAGILRDKS--FARISDTDWQ 117
G A V D D I+ T L FG+IDI++NNAG +Q
Sbjct: 74 GVPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQ 133
Query: 118 LVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTAS-NSGLLGNFGQANYSAAKMALVGLSN 176
++ +++ H+ K G +V +S +G + G Y+ AK AL +
Sbjct: 134 KTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTR 192
Query: 177 TLSIEGEKNNIHCNVIVP 194
+I+ ++ + N + P
Sbjct: 193 CTAIDLIQHGVRVNSVSP 210
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 171 bits (437), Expect = 1e-53
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 28/200 (14%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
RF R +V GAG +GR+ A+ A+ GA+VV+ G +++ A T VAEI
Sbjct: 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNG--------AAEGAATAVAEIEKL 56
Query: 66 GGKAVPNYNSVVDGD--------KIVQTALENFGRIDIVINNAGIL-RDKSFARISDTDW 116
G A+ + D + A + FG I +++ AG L K+ A + + W
Sbjct: 57 GRSAL-----AIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFW 111
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNF-GQANYSAAKMALVGLS 175
V DV+LT F ++ A P M K G +V +S +G G G Y+ +K A++ +
Sbjct: 112 HQVLDVNLTSLFLTAKTALPKMAKG--GAIVTFSSQAGRDGGGPGALAYATSKGAVMTFT 169
Query: 176 NTLSIE-GEKNNIHCNVIVP 194
L+ E G K I N + P
Sbjct: 170 RGLAKEVGPK--IRVNAVCP 187
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 171 bits (437), Expect = 1e-53
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 17/194 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ +VAI+TGA G+G + +LA GA VV+ DL + S
Sbjct: 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADL------------PETDLAGAAASV 55
Query: 66 GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGIL--RDKSFARISDTDWQLVQ 120
G AV + + + + + ++ FGR+DIV NNA D +++ W
Sbjct: 56 GRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTF 115
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
V+ G + + A P + G +V +S + Y+ K A+ L+ ++
Sbjct: 116 TVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVAT 175
Query: 181 EGEKNNIHCNVIVP 194
+ ++ + CN I P
Sbjct: 176 QYGRHGVRCNAIAP 189
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 171 bits (436), Expect = 2e-53
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 14/193 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VA+ TGAG G+GR A+ L RGASVVVN SSKAA+ VVAE++
Sbjct: 18 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS--------SSKAAEEVVAELKKL 69
Query: 66 GGKAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G + V + + + + A+ +FG +D V++N+G+ ++ + V ++
Sbjct: 70 GAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNL 129
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSG-LLGNFGQANYSAAKMALVGLSNTLSIE 181
+ G F V++ H + GR+++T+S + + G A Y+ +K A+ G +++
Sbjct: 130 NTRGQFFVAQQGLKHC--RRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVD 187
Query: 182 GEKNNIHCNVIVP 194
+ N I P
Sbjct: 188 CGAKGVTVNCIAP 200
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 171 bits (435), Expect = 2e-53
Identities = 63/188 (33%), Positives = 90/188 (47%), Gaps = 9/188 (4%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
GR A+VTGA G+G + A +GA V ++ G + A++
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLH---------GTREDKLKEIAADLGKDV 75
Query: 67 GKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTG 126
N + ++ + A IDI++NNAGI RD F R+ D DW V V+LT
Sbjct: 76 FVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTA 135
Query: 127 AFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNN 186
A ++R M ++ YGR++ S G++GN GQ NY AAK L+G S L+ E N
Sbjct: 136 ASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRN 195
Query: 187 IHCNVIVP 194
I N I P
Sbjct: 196 ITVNCIAP 203
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 170 bits (434), Expect = 3e-53
Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 15/192 (7%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRS--K 65
G++A+VT +GLG + AL LA GA +++ R+ + + + I S
Sbjct: 6 QGKLAVVTAGSSGLGFASALELARNGARLLLFS----RNRE-----KLEAAASRIASLVS 56
Query: 66 GGKAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G + + D D++ + A + G DI++ + G R F + DW +
Sbjct: 57 GAQVDIVAGDIREPGDIDRLFEKARD-LGGADILVYSTGGPRPGRFMELGVEDWDESYRL 115
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
A V R A M ++ +GR+V S + L A + ++ ++G+ TL++E
Sbjct: 116 LARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALEL 175
Query: 183 EKNNIHCNVIVP 194
+ + N ++P
Sbjct: 176 APHGVTVNAVLP 187
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 170 bits (434), Expect = 4e-53
Identities = 59/191 (30%), Positives = 85/191 (44%), Gaps = 13/191 (6%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
G+ A+VTG+ GLG +YA LA GA V++N + V + KG
Sbjct: 8 TGKTALVTGSARGLGFAYAEGLAAAGARVILN---------DIRATLLAESVDTLTRKGY 58
Query: 68 KAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHL 124
A V D +DI+INNAGI K + +WQ V D +L
Sbjct: 59 DAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNL 118
Query: 125 TGAFRVSRAAWPHMKKQNY-GRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGE 183
T AF VSR+A M +N G+++ S + A Y+AAK + L+ +++ E
Sbjct: 119 TSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWA 178
Query: 184 KNNIHCNVIVP 194
+ NI N I P
Sbjct: 179 QFNIQTNAIGP 189
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 170 bits (433), Expect = 4e-53
Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 13/188 (6%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G+ +++TGA +G+G + A LL + G+ V+++ G + + ++ ++
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIIS---------GSNEEKLKSLGNALKDNY 62
Query: 67 GKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTG 126
V N + + ++ + +DI++ NAGI D R+ D D+ V D++L
Sbjct: 63 TIEVCN---LANKEE-CSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKA 118
Query: 127 AFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNN 186
F ++R A M ++ YGR++ +S G+ GN GQANY A+K L+G++ +LS E
Sbjct: 119 NFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRG 178
Query: 187 IHCNVIVP 194
I N + P
Sbjct: 179 ITVNAVAP 186
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 171 bits (436), Expect = 6e-53
Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 25/220 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIR-- 63
G+VAIVTG G+G++ L E G++VV+ + + + E++
Sbjct: 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIA---------SRKLERLKSAADELQAN 65
Query: 64 ---SKGGKAVP------NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDT 114
+K + +P N V + +V++ L+ FG+I+ ++NN G IS
Sbjct: 66 LPPTKQARVIPIQCNIRNEEEV---NNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSK 122
Query: 115 DWQLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGL 174
W V + +LTG F + +A + K++ G +V G + AA+ + L
Sbjct: 123 GWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIV-PTKAGFPLAVHSGAARAGVYNL 181
Query: 175 SNTLSIEGEKNNIHCNVIVPTA-ASRLTEDILPPGSYPVK 213
+ +L++E + I N + P S+ +
Sbjct: 182 TKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFF 221
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 169 bits (431), Expect = 6e-53
Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 17/213 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R DG+V I+T A G+G++ AL A GA V+ D+ + + +
Sbjct: 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDI---------NESKLQELEKYPGIQ 53
Query: 66 GGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
V + + R+D++ N AG + + + DW ++++
Sbjct: 54 TRVL-----DVTKKKQ-IDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVR 107
Query: 126 GAFRVSRAAWPHMKKQNYGRLVMTASNSGLL-GNFGQANYSAAKMALVGLSNTLSIEGEK 184
+ + +A P M Q G ++ +S + + G + YS K A++GL+ +++ + +
Sbjct: 108 SMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQ 167
Query: 185 NNIHCNVIVP-TAASRLTEDILPPGSYPVKGFD 216
I CN + P T + ++ + P + +
Sbjct: 168 QGIRCNCVCPGTVDTPSLQERIQARGNPEEARN 200
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 170 bits (432), Expect = 8e-53
Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 14/198 (7%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M + G+ A VTG G+G + A LA GA+V + + +++ A VV+
Sbjct: 23 MMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVN--------AAERAQAVVS 74
Query: 61 EIRSKGGKAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQ 117
EI GG+AV + ++ ++ +E G +DI++N+AGI + D+
Sbjct: 75 EIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFD 134
Query: 118 LVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASN-SGLLGNFGQANYSAAKMALVGLSN 176
V V+ F R+A H+ GR++ SN + L+ G + YSA+K AL GL+
Sbjct: 135 EVMAVNFRAPFVAIRSASRHLGDG--GRIITIGSNLAELVPWPGISLYSASKAALAGLTK 192
Query: 177 TLSIEGEKNNIHCNVIVP 194
L+ + I N++ P
Sbjct: 193 GLARDLGPRGITVNIVHP 210
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 170 bits (432), Expect = 1e-52
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 17/196 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VA VTG+ G+G + A A+ GA V + S A + ++
Sbjct: 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYN---------SHPADEKAEHLQKTY 81
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFA--RISDTDWQLVQ 120
G + ++ D + + ++FG ID+ + NAG+ + + W +
Sbjct: 82 GVHSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKII 141
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFG--QANYSAAKMALVGLSNTL 178
V L G + S KK G L++T+S SG + N QA Y+ AK A L+ +L
Sbjct: 142 SVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSL 201
Query: 179 SIEGEKNNIHCNVIVP 194
+IE N I P
Sbjct: 202 AIEWAP-FARVNTISP 216
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 169 bits (431), Expect = 1e-52
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 15/192 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R G+VA+V+G G+G S+ + GA VV D+ + + AE+
Sbjct: 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDI---------LDEEGKAMAAEL--- 51
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
A + V V TA+ FG + +++NNAGIL + + T+WQ + DV
Sbjct: 52 ADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDV 111
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
+LTG F RA MK+ G ++ +S GL G Y+A K A+ GL+ + ++E
Sbjct: 112 NLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALEL 171
Query: 183 EKNNIHCNVIVP 194
+ I N I P
Sbjct: 172 GPSGIRVNSIHP 183
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 170 bits (432), Expect = 1e-52
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 17/194 (8%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+VA +TG G+G+G A + G V+ + + G
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASR--------SLPRVLTAARKLAGATG 76
Query: 67 GKAVP------NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
+ +P +V V AL+ FGRIDI+IN A +S ++ V
Sbjct: 77 RRCLPLSMDVRAPPAV---MAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVM 133
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
D+ +G F VSR + + + G +V + G G Q + +AK A+ ++ L++
Sbjct: 134 DIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAV 193
Query: 181 EGEKNNIHCNVIVP 194
E NI N + P
Sbjct: 194 EWGPQNIRVNSLAP 207
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 169 bits (431), Expect = 2e-52
Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+G+VA+VTGAG G+GR A+ L RG V+VN S+++A+ VVA I+
Sbjct: 26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNY--------ANSTESAEEVVAAIKKN 77
Query: 66 GGKAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G A N V D ++ + A++ FG++DIV +N+G++ ++ ++ V +
Sbjct: 78 GSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTI 137
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNF-GQANYSAAKMALVGLSNTLSIE 181
+ G F V+R A+ H+ + GRL++ S +G A YS +K A+ + ++I+
Sbjct: 138 NTRGQFFVAREAYKHL--EIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAID 195
Query: 182 GEKNNIHCNVIVP 194
I NV+ P
Sbjct: 196 MADKKITVNVVAP 208
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 168 bits (427), Expect = 3e-52
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 15/191 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
GR +VTGAG G+GR L GA VV R + + +
Sbjct: 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVS----RTQA---------DLDSLVRE 50
Query: 66 GGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
P + D + + AL + G +D+++NNA + + F ++ + +V+L
Sbjct: 51 CPGIEPVCVDLGDWEA-TERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLR 109
Query: 126 GAFRVSRAAWPHMKKQNY-GRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEK 184
+VS+ + + G +V +S + Y + K AL L+ +++E
Sbjct: 110 AVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGP 169
Query: 185 NNIHCNVIVPT 195
+ I N + PT
Sbjct: 170 HKIRVNAVNPT 180
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 168 bits (428), Expect = 3e-52
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M E GRVA+VTG GLG A LAE G SVVV +A++
Sbjct: 13 MKEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASR--------NLEEASEAAQK 64
Query: 61 EIRSKGGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQ 117
G + + V + + K+++ E FG++D V+N AGI R +++
Sbjct: 65 LTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFR 124
Query: 118 LVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTAS-NSGLLGNFGQANYSAAKMALVGLSN 176
V +V+L G + V R A+ +++ + ++ S + + Y+A+K + L+
Sbjct: 125 QVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTK 184
Query: 177 TLSIEGEKNNIHCNVIVP 194
L+ E + I NVI P
Sbjct: 185 ALAKEWGRYGIRVNVIAP 202
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 168 bits (427), Expect = 5e-52
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 17/189 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
F +VAIVTG +G+G + L GA VV L K+ V +
Sbjct: 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSL---------DEKSDVNVSDHFKID 61
Query: 66 GGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
V N V + V+ + +GRIDI++NNAGI + W+ + DV++
Sbjct: 62 ----VTNEEEV---KEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVN 114
Query: 126 GAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKN 185
G++ +++ P M +G ++ AS A Y +K AL+GL+ +++I+
Sbjct: 115 GSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAP- 173
Query: 186 NIHCNVIVP 194
I CN + P
Sbjct: 174 KIRCNAVCP 182
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 167 bits (425), Expect = 6e-52
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 13/192 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R DG A VTGAG+G+G A GA +++ D R+ A D E+ +
Sbjct: 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILID----REAA-----ALDRAAQELGAA 58
Query: 66 GGKAVP-NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHL 124
+ + A E + I++N+AGI R D W+ V V++
Sbjct: 59 VAARIVADVTDAEAMTAAAAEA-EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNV 117
Query: 125 TGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQ--ANYSAAKMALVGLSNTLSIEG 182
G F SRA M + G +V S SG + N Q ++Y A+K A+ L+ L+ E
Sbjct: 118 DGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEW 177
Query: 183 EKNNIHCNVIVP 194
+ N + P
Sbjct: 178 AGRGVRVNALAP 189
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 172 bits (439), Expect = 6e-52
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 12/190 (6%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
DG+VA+VTGA G+G + A + A GA+VV D AA+ + G
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAID----------VDGAAEDLKRVADKVG 260
Query: 67 GKAVP-NYNSVVDGDKIVQTALENFG-RIDIVINNAGILRDKSFARISDTDWQLVQDVHL 124
G A+ + + DKI E+ G ++DI++NNAGI RDK A + + W V V+L
Sbjct: 261 GTALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNL 320
Query: 125 TGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEK 184
R++ + GR++ +S +G+ GN GQ NY+ K ++GL+ L+
Sbjct: 321 LAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLAD 380
Query: 185 NNIHCNVIVP 194
I N + P
Sbjct: 381 KGITINAVAP 390
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 167 bits (426), Expect = 9e-52
Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 23/201 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
RF +VAI+TG+ G+GR+ A+L A GA V + ++ + +I +
Sbjct: 3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGR---------HAERLEETRQQILAA 53
Query: 66 GGKAVPNYNSVV-------DGDKIVQTALENFGRIDIVINNAGIL----RDKSFARISDT 114
G N NSVV D+I+ T L FG++DI++NNAG + K+ S
Sbjct: 54 GVSE-QNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIE 112
Query: 115 DWQLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTAS-NSGLLGNFGQANYSAAKMALVG 173
+ +++L +++ A PH+ G +V +S SGL YS AK A+
Sbjct: 113 SYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISSIASGLHATPDFPYYSIAKAAIDQ 171
Query: 174 LSNTLSIEGEKNNIHCNVIVP 194
+ +I+ ++ I N I P
Sbjct: 172 YTRNTAIDLIQHGIRVNSISP 192
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 166 bits (423), Expect = 1e-51
Identities = 35/196 (17%), Positives = 63/196 (32%), Gaps = 23/196 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ I A G+G + L +R V + + +
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVIL--------DRVENPTALAELKAINP 53
Query: 66 GGKAVPNY----NSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQD 121
+ V + K+++ + +DI+IN AGIL D +
Sbjct: 54 KVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDH--------QIERTIA 105
Query: 122 VHLTGAFRVSRAAWPHMKKQNYGR---LVMTASNSGLLGNFGQANYSAAKMALVGLSNTL 178
++ TG + A K+ G + S +G YSA+K A+V +N+L
Sbjct: 106 INFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSL 165
Query: 179 SIEGEKNNIHCNVIVP 194
+ + I P
Sbjct: 166 AKLAPITGVTAYSINP 181
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 166 bits (422), Expect = 1e-51
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 17/187 (9%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
R A+VTG G+GR+ A L RG V + +AA ++ G
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRN--------PEEAAQSL-------GAVP 47
Query: 70 VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTGAFR 129
+P D +V+ ALE G + ++++ A + K +S +W+ V +HL AF
Sbjct: 48 LPTDLEKDDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFL 107
Query: 130 VSRAAWPHMKKQNYGRLVMTASNSGLL--GNFGQANYSAAKMALVGLSNTLSIEGEKNNI 187
+++AA PHM + +GR++ S + G Y+ AK AL+GL+ L+ E + I
Sbjct: 108 LAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGI 167
Query: 188 HCNVIVP 194
N++ P
Sbjct: 168 RVNLLCP 174
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 166 bits (423), Expect = 2e-51
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 20/197 (10%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+G+VA++TGAG+G G A A+ GA VV+ D A+ V EI
Sbjct: 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDR---------DKAGAERVAGEI--- 53
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGIL-RDKSFARISDTDWQLVQD 121
G A+ + V+ AL FG++DI++NNAGI + ++ + ++ +
Sbjct: 54 GDAALAVAADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVG 113
Query: 122 VHLTGAFRVSRAAWPHMKKQNYGRLVM----TASNSGLLGNFGQANYSAAKMALVGLSNT 177
V++ G + ++ PH K+ AS A Y+A K +V ++
Sbjct: 114 VNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKA 173
Query: 178 LSIEGEKNNIHCNVIVP 194
L+IE I + P
Sbjct: 174 LAIELAPAKIRVVALNP 190
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 165 bits (421), Expect = 2e-51
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 15/191 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
F G A+VTGAG G+GR L GA VV R ++ E
Sbjct: 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVT----RTNS-----DLVSLAKECPGI 54
Query: 66 GGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
V + D D + AL G +D+++NNA ++ + F ++ + V+L
Sbjct: 55 EPVCV----DLGDWDA-TEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLR 109
Query: 126 GAFRVSRAAWPHMKKQNY-GRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEK 184
F+VS+ M + G +V +S + YS+ K A+ L+ +++E
Sbjct: 110 SVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGP 169
Query: 185 NNIHCNVIVPT 195
+ I N + PT
Sbjct: 170 HKIRVNSVNPT 180
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 165 bits (421), Expect = 3e-51
Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 16/195 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+AI+TGA G+G A LA G VV+ +S + + V EI
Sbjct: 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLI---------ARSKQNLEKVHDEIMRS 54
Query: 66 GGKAVPNYNSVVD------GDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
+D D ++ + +G +DI++N A + D S + D +++ +
Sbjct: 55 NKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVD-NFRKI 113
Query: 120 QDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLS 179
++++ + + + MK Q G + AS + G Y + K AL+GL+ +L
Sbjct: 114 MEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLY 173
Query: 180 IEGEKNNIHCNVIVP 194
E I + P
Sbjct: 174 RELAPLGIRVTTLCP 188
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 165 bits (419), Expect = 5e-51
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 17/192 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ G+ AIV G G+G + L E GA V++ G++ + E
Sbjct: 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLT---------GRNESNIARIREEF--- 52
Query: 66 GGKAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G + + + + + A + G ID++ NAG+ + F ++S+ + V
Sbjct: 53 GPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAV 112
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
+ GAF + P +++ G +V T+S + G+ G + YSA+K ALV ++ L+ E
Sbjct: 113 NTKGAFFTVQRLTPLIREG--GSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAEL 170
Query: 183 EKNNIHCNVIVP 194
I N + P
Sbjct: 171 LPRGIRVNSVSP 182
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 165 bits (421), Expect = 6e-51
Identities = 42/218 (19%), Positives = 81/218 (37%), Gaps = 32/218 (14%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+P + A+VTGA +GR+ A+ L + G VV++ S++AA ++
Sbjct: 15 VPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHN--------SAEAAVSLAD 66
Query: 61 EI-RSKGGKAVP-------NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARIS 112
E+ + + AV + ++I+ + FGR D+++NNA +
Sbjct: 67 ELNKERSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGD 126
Query: 113 DTD----------WQLVQDVHLTGAFRVSRAAWPHMK------KQNYGRLVMTASNSGLL 156
D + + F ++ + K + +V
Sbjct: 127 HEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQ 186
Query: 157 GNFGQANYSAAKMALVGLSNTLSIEGEKNNIHCNVIVP 194
+ Y+ K ALVGL+ + ++E I N + P
Sbjct: 187 PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAP 224
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 163 bits (416), Expect = 1e-50
Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 17/190 (8%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
G+V +VTG G+G+S +L VV + +S + + G +
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGV-------ARSEAPLKKLKEKY---GDR 51
Query: 69 AVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRD-KSFARISDTDWQLVQDVHL 124
+ + ++V A++ G+ID ++ NAG+L ++ I W+ + D++
Sbjct: 52 FFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINF 111
Query: 125 TGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEK 184
+ A P +KK N G +V +S++ + Y ++K AL + TL+ E+
Sbjct: 112 FSIVSLVGIALPELKKTN-GNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLAN--EE 168
Query: 185 NNIHCNVIVP 194
+ + P
Sbjct: 169 RQVKAIAVAP 178
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 164 bits (417), Expect = 2e-50
Identities = 58/193 (30%), Positives = 100/193 (51%), Gaps = 14/193 (7%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R DG+VA+VTG+G G+G + A+ L GA VVVN S+K A+ VV+EI++
Sbjct: 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNY--------ANSTKDAEKVVSEIKAL 66
Query: 66 GGKAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G A+ + V + K+ A+ +FG +DI ++N+G++ +++ ++ V +
Sbjct: 67 GSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSL 126
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTAS-NSGLLGNFGQANYSAAKMALVGLSNTLSIE 181
+ G F V+R A+ H+ + GR+V+T+S S + YS +K A+ S +
Sbjct: 127 NTRGQFFVAREAYRHLTEG--GRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKD 184
Query: 182 GEKNNIHCNVIVP 194
I N + P
Sbjct: 185 CGDKKITVNAVAP 197
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 164 bits (417), Expect = 2e-50
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 22/205 (10%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ Q D V +VTG G+G + L A +G V VN + +AAD VVA
Sbjct: 18 LYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAA--------NREAADAVVA 69
Query: 61 EIRSKGGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILR-DKSFARISD 113
I GG+A V N + + FGR+D ++NNAGI+ + +S
Sbjct: 70 AITESGGEAVAIPGDVGNAADI---AAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSV 126
Query: 114 TDWQLVQDVHLTGAFRVSRAAWPHMKKQ---NYGRLVMTASNSGLLGNFGQ-ANYSAAKM 169
+ + V++TG+ + A M + G +V +S + +LG+ Q +Y+A+K
Sbjct: 127 ERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKA 186
Query: 170 ALVGLSNTLSIEGEKNNIHCNVIVP 194
A+ + L+ E I N + P
Sbjct: 187 AIDTFTIGLAREVAAEGIRVNAVRP 211
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 163 bits (415), Expect = 2e-50
Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 17/194 (8%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ F R +VTG G+G + A LA G V V G G D
Sbjct: 7 EGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG-APKGLFGVEVD---- 61
Query: 61 EIRSKGGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
V + ++V D+ E+ G ++++++NAG+ D R+++ ++ V
Sbjct: 62 ---------VTDSDAV---DRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVI 109
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
+ +LTGAFRV++ A M++ +GR++ S SGL G QANY+A+K ++G++ +++
Sbjct: 110 NANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIAR 169
Query: 181 EGEKNNIHCNVIVP 194
E K N+ NV+ P
Sbjct: 170 ELSKANVTANVVAP 183
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 162 bits (413), Expect = 4e-50
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 16/195 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R DG+VAI+TG G+G + A E GA V++ S + + +
Sbjct: 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGR---------HSDVGEKAAKSVGT- 52
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
+ + D D K+ + FG + ++NNAGI +KS + +W+ + V
Sbjct: 53 PDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAV 112
Query: 123 HLTGAFRVSRAAWPHMKKQNYG-RLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE 181
+L G F +R MK + G ++ +S G +G+ Y+A+K A+ +S + +++
Sbjct: 113 NLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALD 172
Query: 182 --GEKNNIHCNVIVP 194
+ ++ N + P
Sbjct: 173 CALKDYDVRVNTVHP 187
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 162 bits (412), Expect = 5e-50
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 21/186 (11%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
+ +V A G+GR+ A +L++ GA V + R+ + VV ++R
Sbjct: 19 DKGVLVLAASRGIGRAVADVLSQEGAEVTICA----RNEELLKRSGHRYVVCDLR----- 69
Query: 69 AVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTGAF 128
K + E +DI++ NAG + F +++ D++ D
Sbjct: 70 ------------KDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMI 117
Query: 129 RVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNNIH 188
++ R P MK++ +GR+V S S + ++A+MAL G TLS E I
Sbjct: 118 KIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGIT 177
Query: 189 CNVIVP 194
N + P
Sbjct: 178 VNCVAP 183
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 162 bits (413), Expect = 8e-50
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 22/197 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ G VA++TG +GLGR+ GA V V D +A+ + +
Sbjct: 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDK------------SAERLRELEVAH 49
Query: 66 GGKAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTD-----WQ 117
GG AV + S+ D + + L FG+ID +I NAGI + D +
Sbjct: 50 GGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFD 109
Query: 118 LVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNT 177
+ V++ G +A P + G +V T SN+G N G Y+A K A+VGL
Sbjct: 110 DIFHVNVKGYIHAVKACLPALVSSR-GSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQ 168
Query: 178 LSIEGEKNNIHCNVIVP 194
++ E ++ N + P
Sbjct: 169 MAFELAP-HVRVNGVAP 184
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 161 bits (409), Expect = 3e-49
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 17/192 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R + ++A++TGA +G+G + A GA V + R D D +AEI
Sbjct: 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITG----RRKD-----VLDAAIAEI--- 73
Query: 66 GGKAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
GG AV + ++ + D++ + GRID++ NAG +++ + D
Sbjct: 74 GGGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDR 133
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
++ G + A P + + +V+T S +G G + Y+A+K AL + ++
Sbjct: 134 NVKGVLFTVQKALPLLARG--SSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDL 191
Query: 183 EKNNIHCNVIVP 194
+ I N + P
Sbjct: 192 KDRGIRINTLSP 203
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 160 bits (407), Expect = 3e-49
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
R +VTG G+G + A A+ G V + +S + + +A
Sbjct: 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAIT---------YRSGEPPEGFLA------ 63
Query: 67 GKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTG 126
+ ++ + E G ++++I NAG+ +D+ R+S+ D+ V + +LTG
Sbjct: 64 --VKCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTG 121
Query: 127 AFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNN 186
FRV + A M + GR+V+ +S GLLG+ GQANY+A+K LVG + +L+ E N
Sbjct: 122 TFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGSRN 181
Query: 187 IHCNVIVP 194
I NV+ P
Sbjct: 182 ITFNVVAP 189
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 160 bits (408), Expect = 3e-49
Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G + ++TGAG G+GR A A+ + +V+ D + G + A+ + G
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWD----INKHG-----LEETAAKCKGLG 79
Query: 67 GKAVPNYNSVVDGDKIVQTA---LENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVH 123
K + + I +A G + I++NNAG++ D + +V+
Sbjct: 80 AKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVN 139
Query: 124 LTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE-- 181
+ F ++A P M K N+G +V AS +G + Y ++K A VG TL+ E
Sbjct: 140 VLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELA 199
Query: 182 -GEKNNIHCNVIVP 194
+ + + P
Sbjct: 200 ALQITGVKTTCLCP 213
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 161 bits (410), Expect = 5e-49
Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 21/211 (9%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK- 65
F G+VA +TG G GLG+ LL+ GA V+ R D +I S+
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIAS----RKMD-----VLKATAEQISSQT 74
Query: 66 GGKAVP------NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
G K + + V V ++ G +IVINNA R+S W+ +
Sbjct: 75 GNKVHAIQCDVRDPDMV---QNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTI 131
Query: 120 QDVHLTGAFRVSRAAWPHM-KKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTL 178
D+ L G V+ + K Q + + G+ ++AK + +S +L
Sbjct: 132 TDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSL 191
Query: 179 SIEGEKNNIHCNVIVPTA-ASRLTEDILPPG 208
+ E K + NVI P ++ L P
Sbjct: 192 AAEWGKYGMRFNVIQPGPIKTKGAFSRLDPT 222
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 160 bits (406), Expect = 7e-49
Identities = 47/213 (22%), Positives = 82/213 (38%), Gaps = 32/213 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRS- 64
+ A++TG +G S A+ L ++G VVV+ S AA +VAE+ +
Sbjct: 8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRH--------SEGAAQRLVAELNAA 59
Query: 65 KGGKA------VPNYNSVVDG-DKIVQTALENFGRIDIVINNAGILRD-----------K 106
+ G A + +S++D + I+ + FGR D+++NNA
Sbjct: 60 RAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGA 119
Query: 107 SFARISDTDWQLVQDVHLTGAFRVSRAAWPHMK-----KQNYGRLVMTASNSGLLGNFGQ 161
+ A+ D + + + RA + +V L G
Sbjct: 120 ADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGF 179
Query: 162 ANYSAAKMALVGLSNTLSIEGEKNNIHCNVIVP 194
Y+ AK AL GL+ ++E +I N + P
Sbjct: 180 CVYTMAKHALGGLTRAAALELAPRHIRVNAVAP 212
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 158 bits (403), Expect = 2e-48
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 18/198 (9%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M R+ G+V +VTG G G+G GA VV+ D +
Sbjct: 1 MATGTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDK---------DESGGRALEQ 51
Query: 61 EIRSKGGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGIL-RDKSFARISDTDW 116
E+ AV V D +V + FGR+D V+NNAG + S +
Sbjct: 52 EL----PGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGF 107
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSN 176
+ + +++L G + +++ A P+++K G ++ +S G +G Y A K A+ ++
Sbjct: 108 RQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIGQAQAVPYVATKGAVTAMTK 166
Query: 177 TLSIEGEKNNIHCNVIVP 194
L+++ + N I P
Sbjct: 167 ALALDESPYGVRVNCISP 184
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 155 bits (395), Expect = 1e-47
Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 16/191 (8%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
IVTGAG+GLGR+ + L ERG V + R + G
Sbjct: 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMG----RRYQ-----RLQQQELLL---GNA 50
Query: 69 AVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
+ + + A+E G ++V++ AG + + V + +L
Sbjct: 51 VIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLV 110
Query: 126 GAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKN 185
V++ + ++ G L S++ +G ++ Y A+K + G +L E + +
Sbjct: 111 STILVAQQTVRLIGERG-GVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDS 169
Query: 186 NIHCNVIVPTA 196
+ + P+
Sbjct: 170 PLRLVNLYPSG 180
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 156 bits (396), Expect = 2e-47
Identities = 29/182 (15%), Positives = 65/182 (35%), Gaps = 14/182 (7%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ ++TGA +G AL L E G V+++ ++ A+ V
Sbjct: 19 FQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISY---------RTEHAS---VT 66
Query: 61 EIRSKGGKAVP-NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLV 119
E+R G A+ +++ + + V++NA ++ ++ +
Sbjct: 67 ELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETP-GEEADNFTRM 125
Query: 120 QDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLS 179
VH+ + ++ P + +V + + G+ Y A K L L+ + +
Sbjct: 126 FSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFA 185
Query: 180 IE 181
Sbjct: 186 AR 187
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 155 bits (394), Expect = 7e-47
Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 49/228 (21%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK-G 66
VA+VTGA LGRS A L G +V ++ S+ A+ + A + ++
Sbjct: 8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR--------SAAEANALSATLNARRP 59
Query: 67 GKAV--------------------PNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDK 106
A+ ++V ++GR D+++NNA
Sbjct: 60 NSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPT 119
Query: 107 SFARISDTDWQL--------------VQDVHLTGAFRVSRAAWPHM------KKQNYGRL 146
R + + + + + + +A + + +
Sbjct: 120 PLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSI 179
Query: 147 VMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNNIHCNVIVP 194
+ G Y+ AK AL GL+ + ++E I N + P
Sbjct: 180 INMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGP 227
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 153 bits (390), Expect = 1e-46
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 18/194 (9%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R G+VA+VTG +G+G LL GA V +D+ + A + AE+
Sbjct: 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDI---------NEAAGQQLAAEL--- 50
Query: 66 GGKAVPNYNSVVDGD---KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G +++ + V ++ G +++++NNAGIL D+ + +
Sbjct: 51 GERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKI 110
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE- 181
+ F + MK+ G ++ AS S L A YSA+K A+ L+ ++
Sbjct: 111 NTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSC 169
Query: 182 GEKN-NIHCNVIVP 194
++ I N I P
Sbjct: 170 RKQGYAIRVNSIHP 183
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 153 bits (388), Expect = 2e-46
Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
G+VA+VTGA G+GR+ A LA GA V ++ G + A+ V EI+S GG
Sbjct: 6 KGKVALVTGASRGIGRAIAKRLANDGALVAIHY--------GNRKEEAEETVYEIQSNGG 57
Query: 68 KAVP---NYNSVVDGDKIVQTALENF------GRIDIVINNAGILRDKSFARISDTDWQL 118
A N S+ + + + + DI+INNAGI ++ +
Sbjct: 58 SAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDR 117
Query: 119 VQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTL 178
+ V+ F + + A + ++ R++ +S + + YS K A+ ++ TL
Sbjct: 118 MVSVNAKAPFFIIQQALSRL--RDNSRIINISSAATRISLPDFIAYSMTKGAINTMTFTL 175
Query: 179 SIEGEKNNIHCNVIVP 194
+ + I N I+P
Sbjct: 176 AKQLGARGITVNAILP 191
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 154 bits (391), Expect = 5e-46
Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 49/228 (21%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK-G 66
VA+VTGA LGRS A L G +V ++ S+ A+ + A + ++
Sbjct: 45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR--------SAAEANALSATLNARRP 96
Query: 67 GKAV--------------------PNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDK 106
A+ ++V ++GR D+++NNA
Sbjct: 97 NSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPT 156
Query: 107 SFARISDTDWQL--------------VQDVHLTGAFRVSRAAWPHM------KKQNYGRL 146
R + + + + + + +A + + +
Sbjct: 157 PLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSI 216
Query: 147 VMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNNIHCNVIVP 194
+ G Y+ AK AL GL+ + ++E I N + P
Sbjct: 217 INMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGP 264
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 152 bits (385), Expect = 6e-46
Identities = 27/197 (13%), Positives = 60/197 (30%), Gaps = 23/197 (11%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ + + +V G LG + + + D + + + S
Sbjct: 14 LVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDF--RENPNADHSFTIK---- 67
Query: 61 EIRSKGGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRD-KSFARISDTDWQLV 119
+ +++ ++D + AG + + + +
Sbjct: 68 ---------DSGEEEI---KSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGM 115
Query: 120 QDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLS 179
D++L AF + + + G V+T +++ L G Y A K A + L+
Sbjct: 116 IDMNLYSAFASAHIGAKLLNQ--GGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLA 173
Query: 180 IE--GEKNNIHCNVIVP 194
E G I+P
Sbjct: 174 SENGGLPAGSTSLGILP 190
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 151 bits (384), Expect = 7e-46
Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 19/188 (10%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
+VTG G+G++ LL + V+N D + S +A+ + I++
Sbjct: 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINI-------DIQQSFSAENLKF-IKA-- 51
Query: 67 GKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTG 126
+ + ++ D + NAGIL S I + V D+++
Sbjct: 52 --DLTKQQDI---TNVLDII--KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWS 104
Query: 127 AFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNN 186
+ + ++K +V S+ + Y+ +K A+ ++ +L+++ K
Sbjct: 105 SIYFIKGLENNLKVG--ASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQ 162
Query: 187 IHCNVIVP 194
I N + P
Sbjct: 163 IRVNTVCP 170
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 151 bits (384), Expect = 2e-45
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 19/207 (9%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
GR+A+VTG G+G+ A L E GA V + + ++A + G
Sbjct: 28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFIC---------ARDAEACADTATRLS-AYG 77
Query: 68 KAVP---NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHL 124
+ +S ++ Q E R+DI++NNAG + + W+ V +++
Sbjct: 78 DCQAIPADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNV 137
Query: 125 TGAFRVSRAAWPHMKK----QNYGRLVMTASNSGLLGNFGQA-NYSAAKMALVGLSNTLS 179
T F + P +++ +N R++ S +G+ QA Y +K AL LS L+
Sbjct: 138 TSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLA 197
Query: 180 IEGEKNNIHCNVIVPTA-ASRLTEDIL 205
E +I+ NVI P SR+T I
Sbjct: 198 KELVGEHINVNVIAPGRFPSRMTRHIA 224
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 151 bits (383), Expect = 6e-45
Identities = 51/205 (24%), Positives = 74/205 (36%), Gaps = 26/205 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
F GR A VTG G+G L +G V + D D + D +A + ++
Sbjct: 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIAD----IRQD-----SIDKALATLEAE 55
Query: 66 GGKA--------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQ 117
G V + FG + I+ NNAG+ + S DW
Sbjct: 56 GSGPEVMGVQLDVASREGF---KMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWD 112
Query: 118 LVQDVHLTGAFRVSRAAWPHMKK------QNYGRLVMTASNSGLLGNFGQANYSAAKMAL 171
+ V+L G P M + Q G +V TAS + L Y+ K A+
Sbjct: 113 WLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAV 172
Query: 172 VGLSNTLSIEGEKNNIHCNVIVPTA 196
GLS +L K I +V+ P
Sbjct: 173 RGLSESLHYSLLKYEIGVSVLCPGL 197
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 147 bits (374), Expect = 6e-44
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R +VAI+TG G+G + A L GA VV+ D+ + V I S
Sbjct: 13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADI---------ADDHGQKVCNNIGSP 63
Query: 66 GGKA-----VPNYNSVVDGDKIVQTALENFGRIDIVINNAGIL--RDKSFARISDTDWQL 118
+ V V +V T + G++DI+ N G+L S + D++
Sbjct: 64 DVISFVHCDVTKDEDV---RNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKR 120
Query: 119 VQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQAN-YSAAKMALVGLSNT 177
V D+++ GAF V++ A M G +V TAS S G ++ Y+A K A++GL+ +
Sbjct: 121 VMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTS 180
Query: 178 LSIEGEKNNIHCNVIVP 194
L E + I N + P
Sbjct: 181 LCTELGEYGIRVNCVSP 197
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 147 bits (373), Expect = 1e-43
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 24/198 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ G+ ++TG +G+GR+ ++ A+ GA++ + L + D A+ + +
Sbjct: 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGD--------ANETKQYVEKE 95
Query: 66 GGKAVPNYNSVVDGD--------KIVQTALENFGRIDIVINNAGI-LRDKSFARISDTDW 116
G K V ++ GD IVQ + G ++I++NN + I+
Sbjct: 96 GVKCV-----LLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQL 150
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSN 176
+ +++ F V++AA H+K+ ++ TAS GN +YSA K A+V +
Sbjct: 151 EKTFRINIFSYFHVTKAALSHLKQ--GDVIINTASIVAYEGNETLIDYSATKGAIVAFTR 208
Query: 177 TLSIEGEKNNIHCNVIVP 194
+LS + I N + P
Sbjct: 209 SLSQSLVQKGIRVNGVAP 226
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 143 bits (362), Expect = 5e-42
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 23/198 (11%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R R A+VTG +G+GR+ A+ A GA V +N L + + A V A I
Sbjct: 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEED-------AQQVKALIEEC 98
Query: 66 GGKAVPNYNSVVDGD--------KIVQTALENFGRIDIVINNAGIL-RDKSFARISDTDW 116
G KAV ++ GD +V A E G +DI+ AG ++ +
Sbjct: 99 GRKAV-----LLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQF 153
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSN 176
Q V++ F +++ A P + K ++ T+S + +Y+A K A++ S
Sbjct: 154 QQTFAVNVFALFWITQEAIPLLPKG--ASIITTSSIQAYQPSPHLLDYAATKAAILNYSR 211
Query: 177 TLSIEGEKNNIHCNVIVP 194
L+ + + I N++ P
Sbjct: 212 GLAKQVAEKGIRVNIVAP 229
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 139 bits (353), Expect = 3e-41
Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 19/192 (9%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ R +V G LG R V D+ + E
Sbjct: 4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTE---- 59
Query: 66 GGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAG-ILRDKSFARISDTDWQLVQDVHL 124
D L ++D ++ AG + ++ + L+ +
Sbjct: 60 ----------QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSI 109
Query: 125 TGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE--G 182
+ S A H+K+ G L + + + L G G Y AK A+ L +L+ + G
Sbjct: 110 WTSTISSHLATKHLKE--GGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSG 167
Query: 183 EKNNIHCNVIVP 194
+ ++P
Sbjct: 168 MPSGAAAIAVLP 179
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 139 bits (352), Expect = 4e-41
Identities = 37/190 (19%), Positives = 76/190 (40%), Gaps = 16/190 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
++A+VTGA G+G L+ + G++ + + +
Sbjct: 2 SLKKKIAVVTGATGGMGIEIVKDLSRDHIVYAL----------GRNPEHLAALAEIEGVE 51
Query: 66 GGKA-VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHL 124
++ + + V L+N +D +++ A + RD + S +W D+++
Sbjct: 52 PIESDIVKEVLE---EGGVD-KLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNV 107
Query: 125 TGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEK 184
+SR P + + G ++ S +G + G Y+A+K AL GL++ E
Sbjct: 108 IVPAELSRQLLPAL-RAASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEAN 166
Query: 185 NNIHCNVIVP 194
N I + + P
Sbjct: 167 NGIRVSTVSP 176
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 140 bits (354), Expect = 5e-41
Identities = 49/199 (24%), Positives = 81/199 (40%), Gaps = 24/199 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+ IVTGA G+GR A LA+ GA VVV R + VV+
Sbjct: 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTA----RSKE-----TLQKVVSHCLEL 75
Query: 66 GGKAVPNYNSVVDGD--------KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQ 117
G + + G + V A + G +D++I N + +
Sbjct: 76 GAASA----HYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVR 131
Query: 118 LVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNT 177
+V+ ++ AA P +K+ N G +V+ +S +G + A YSA+K AL G ++
Sbjct: 132 KSMEVNFLSYVVLTVAALPMLKQSN-GSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSS 190
Query: 178 LSIE--GEKNNIHCNVIVP 194
+ E + N+ + V
Sbjct: 191 IRKEYSVSRVNVSITLCVL 209
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 137 bits (347), Expect = 3e-40
Identities = 53/205 (25%), Positives = 81/205 (39%), Gaps = 31/205 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
+ RV IVTGA +GLG + +LA+ GA+V+ DL A + AE+
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDL---------KPPAGEEPAAEL--- 51
Query: 66 GGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFAR----ISDTD 115
G V N + A + FG + ++N AG + +
Sbjct: 52 GAAVRFRNADVTNEADATAA---LAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDS 108
Query: 116 WQLVQDVHLTGAFRVSRAAWPHMKKQN------YGRLVMTASNSGLLGNFGQANYSAAKM 169
+ V+L G F + R A M + G +V TAS + G GQA Y+A+K
Sbjct: 109 FARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKG 168
Query: 170 ALVGLSNTLSIEGEKNNIHCNVIVP 194
+ L+ + E + I I P
Sbjct: 169 GVAALTLPAARELARFGIRVVTIAP 193
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 137 bits (347), Expect = 4e-40
Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 33/207 (15%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G VA++TG +GLG + A L +GAS V+ DL + + ++
Sbjct: 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDL---------PNSGGEAQAKKL--- 56
Query: 66 GGKA------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDT----- 114
G V + V + A FGR+D+ +N AGI +
Sbjct: 57 GNNCVFAPADVTSEKDVQTA---LALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTL 113
Query: 115 -DWQLVQDVHLTGAFRVSRAAWPHMKKQ------NYGRLVMTASNSGLLGNFGQANYSAA 167
D+Q V DV+L G F V R M + G ++ TAS + G GQA YSA+
Sbjct: 114 EDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSAS 173
Query: 168 KMALVGLSNTLSIEGEKNNIHCNVIVP 194
K +VG++ ++ + I I P
Sbjct: 174 KGGIVGMTLPIARDLAPIGIRVMTIAP 200
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 137 bits (346), Expect = 8e-40
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 26/208 (12%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
M +F+G AIV+G GLG + L G VV+ DL +++ +
Sbjct: 22 MVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADL---------AAEKGKALAD 72
Query: 61 EIRSKGGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRD-----KSFARIS 112
E+ G +A +V D + ++ A + V+ + G + +
Sbjct: 73 EL---GNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPAD 129
Query: 113 DTDWQLVQDVHLTGAFRVSRAAWPHMKKQ------NYGRLVMTASNSGLLGNFGQANYSA 166
+ D++L G + V+R + G LV+TAS +G G GQ Y+A
Sbjct: 130 MGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAA 189
Query: 167 AKMALVGLSNTLSIEGEKNNIHCNVIVP 194
AK ++GL+ + + I N I P
Sbjct: 190 AKAGVIGLTIAAARDLSSAGIRVNTIAP 217
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 132 bits (333), Expect = 2e-38
Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 21/191 (10%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAAD-TVVAEIRSKG 66
IV G LG + + G +V+ DL D + + +S
Sbjct: 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSIL 61
Query: 67 GKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILR-DKSFARISDTDWQLVQDVHLT 125
+ + ++D V AG + ++ + L+ +
Sbjct: 62 EQTA---------------SSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVW 106
Query: 126 GAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIE--GE 183
+ ++ A H+K G L +T + + + Y AK A+ L+++L+ + G
Sbjct: 107 SSAIAAKLATTHLKPG--GLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGL 164
Query: 184 KNNIHCNVIVP 194
+N I+P
Sbjct: 165 PDNSAVLTIMP 175
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 128 bits (323), Expect = 1e-36
Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 23/194 (11%)
Query: 11 VAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA- 69
V +TG+ +G+G + LLA G +V+ D G + A++ + GG+
Sbjct: 3 VIAITGSASGIGAALKELLARAGHTVIGIDRG------------QADIEADLSTPGGRET 50
Query: 70 -----VPNYNSVVDGD--KIVQTALENFGRIDIVINNAGILR--DKSFARISDTDWQLVQ 120
+ V+DG + + +N G+ D +S
Sbjct: 51 AVAAVLDRCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAV 110
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSI 180
V A + A P ++ G + G Y+ +K A+ L+ +
Sbjct: 111 IVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQGQ-THLAYAGSKYAVTCLARRNVV 169
Query: 181 EGEKNNIHCNVIVP 194
+ + NV+ P
Sbjct: 170 DWAGRGVRLNVVAP 183
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 127 bits (321), Expect = 3e-36
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 25/201 (12%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
VA+VTG +GLG + L + GA VVV D+ G+ VVA++ +
Sbjct: 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGED------------VVADLGDR 53
Query: 66 GGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRD-KSFAR---ISDTDWQLVQD 121
A + + A E G + IV+N AG + +R S ++ + D
Sbjct: 54 ARFAAADVTDEAAVASALDLA-ETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVD 112
Query: 122 VHLTGAFRVSRAAWPHMKK--------QNYGRLVMTASNSGLLGNFGQANYSAAKMALVG 173
++L G+F V R A + K + G ++ TAS + G GQA YSA+K +VG
Sbjct: 113 INLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVG 172
Query: 174 LSNTLSIEGEKNNIHCNVIVP 194
++ ++ + + I I P
Sbjct: 173 MTLPIARDLASHRIRVMTIAP 193
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 123 bits (311), Expect = 4e-35
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 14/188 (7%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
++TGA G+G + A LL +G V L RD + AE+
Sbjct: 5 KGAVLITGASRGIGEATARLLHAKGYRVG---LMA-RDEK-----RLQALAAELEGALPL 55
Query: 69 A--VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTG 126
V + V E FG + ++NNAG+ K ++ +W+LV D +LTG
Sbjct: 56 PGDVREEGDW---ARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTG 112
Query: 127 AFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNN 186
AF R A P + ++ G +V S +G G A Y+A+K L+GL+ ++ + N
Sbjct: 113 AFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREAN 172
Query: 187 IHCNVIVP 194
+ ++P
Sbjct: 173 VRVVNVLP 180
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 123 bits (311), Expect = 4e-35
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 29/195 (14%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
R A+VTG +GLGR+ AL L RG VVV DL +R+G+ D
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVLDL--RREGEDLIYVEGD------------- 47
Query: 70 VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFAR----ISDTDWQLVQDVHLT 125
V V V A E + V++ AG+ + ++ V +V+L
Sbjct: 48 VTREEDVRRA---VARAQE-EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLL 103
Query: 126 GAFRVSRAAWPHMKKQN------YGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLS 179
G F V R A M++ G +V TAS + G GQA Y+A+K +V L+ +
Sbjct: 104 GTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAA 163
Query: 180 IEGEKNNIHCNVIVP 194
E I + P
Sbjct: 164 RELAGWGIRVVTVAP 178
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 123 bits (311), Expect = 5e-35
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 16/191 (8%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK-G 66
+ +VA++TGA G+G + A LA G ++ LG R D + + E+ + G
Sbjct: 1 EMKVAVITGASRGIGEAIARALARDGYALA---LGA-RSVD-----RLEKIAHELMQEQG 51
Query: 67 GKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVH 123
+ ++ V + + + LE FG +D+V+ NAG+ K +S+ ++ + +V+
Sbjct: 52 VEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVN 111
Query: 124 LTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGE 183
L G +R +A +K+ LV T+ S Y + K A L T IE
Sbjct: 112 LLGVWRTLKAFLDSLKRTGGLALVTTSDVSA-RLIPYGGGYVSTKWAARALVRTFQIENP 170
Query: 184 KNNIHCNVIVP 194
++ + P
Sbjct: 171 --DVRFFELRP 179
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 125 bits (316), Expect = 5e-35
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 8/190 (4%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
++ ++TGA +G GR A LA G V RD G+++ + + R
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVY----ASMRDIVGRNASNVEAIAGFARDNDVD 60
Query: 69 AVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
V + + + GRID++I+NAG + + + + D+++
Sbjct: 61 LRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVL 120
Query: 126 GAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNF-GQANYSAAKMALVGLSNTLSIEGEK 184
RV+RAA PHM++Q +G L+ +S+S G A Y AAK A+ ++ + E +
Sbjct: 121 STQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSR 180
Query: 185 NNIHCNVIVP 194
I ++IVP
Sbjct: 181 WGIETSIIVP 190
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 119 bits (301), Expect = 6e-34
Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 21/183 (11%)
Query: 12 AIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAVP 71
++TGA GLG A A +G ++ L G R A + E+ G +A+P
Sbjct: 3 VLITGATGGLGG--AFARALKGHDLL---LSG-RRAG-----ALAELAREV---GARALP 48
Query: 72 NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTGAFRVS 131
+ D + + LE G +D++++ G S + + HL A
Sbjct: 49 A--DLADELE-AKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTA---- 101
Query: 132 RAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNNIHCNV 191
H + Q R V + + G A Y+AAK AL E + +H +
Sbjct: 102 AFVLKHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVL 161
Query: 192 IVP 194
+
Sbjct: 162 VRL 164
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 120 bits (302), Expect = 1e-33
Identities = 40/211 (18%), Positives = 71/211 (33%), Gaps = 38/211 (18%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAE---RGASVVVNDLGGQRDGDGKSSKAADTVVAEI 62
V ++TGA G GR+ A LA G+ ++V+ +S + E+
Sbjct: 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVS---------ARSESMLRQLKEEL 53
Query: 63 RSK--GGKAVPNYNSVVDGD--------KIVQTALENFG----RIDIVINNAGILRDKSF 108
++ K V + D +++ E + ++INNA L D S
Sbjct: 54 GAQQPDLKVV-----LAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSK 108
Query: 109 ARISDTD---WQLVQDVHLTGAFRVSRAAWPHMKKQN--YGRLVMTASNSGLLGNFGQAN 163
++ D ++LT ++ + +V +S L G
Sbjct: 109 GFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGL 168
Query: 164 YSAAKMALVGLSNTLSIEGEKNNIHCNVIVP 194
Y A K A L L+ E ++ P
Sbjct: 169 YCAGKAARDMLYQVLAAEEP--SVRVLSYAP 197
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 120 bits (303), Expect = 1e-33
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 12/177 (6%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
+V ++TGA G+G A L GA ++ LG +R + + EIR GG
Sbjct: 4 DKVILITGASGGIGEGIARELGVAGAKIL---LGARR------QARIEAIATEIRDAGGT 54
Query: 69 AVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLT 125
A+ V D + Q A++ +GRID+++NNAG++ A + +W+ + DV++
Sbjct: 55 ALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIK 114
Query: 126 GAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
G A P M+ Q G+++ S L A Y A K A+ +S+ L E
Sbjct: 115 GVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQES 171
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 114 bits (288), Expect = 5e-32
Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 31/188 (16%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
+ ++ GA LG + L ++ + + + V +I +
Sbjct: 2 NAMKILLIGASGTLGSAVKERLEKKAEVITA-------------GRHSGDVTVDITNIDS 48
Query: 68 KAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTGA 127
++ E G++D +++ G ++ + L G
Sbjct: 49 ---------------IKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQ 93
Query: 128 FRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNNI 187
+ + + G +T A+ + A A+ + + +IE I
Sbjct: 94 INLVLLGIDSLNDK--GSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIE-MPRGI 150
Query: 188 HCNVIVPT 195
N + P
Sbjct: 151 RINTVSPN 158
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 115 bits (289), Expect = 1e-31
Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 57/213 (26%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
+ +++G G+G + +L G +V D+ V+A++ + G
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDI------------RDAEVIADLSTAEG-- 47
Query: 70 VPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTGAFR 129
I + +D ++ AG+ V V+ GA
Sbjct: 48 --------RKQAIADVLAKCSKGMDGLVLCAGLGP-------QTKVLGNVVSVNYFGATE 92
Query: 130 VSRAAWPHMKKQNYGRLVMTASNSGLL----------------------------GNFGQ 161
+ A P +KK + V+ +S + G
Sbjct: 93 LMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGN 152
Query: 162 ANYSAAKMALVGLSNTLSIEGEKNNIHCNVIVP 194
Y+ +K AL + + + N I P
Sbjct: 153 LAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAP 185
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 113 bits (286), Expect = 2e-31
Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 13/184 (7%)
Query: 11 VAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAV 70
+ ++TGA +GLG A L G + L G R TV + + G
Sbjct: 3 LIVITGASSGLGAELAKLYDAEGKATY---LTG-RSES-----KLSTVTNCLSNNVGYRA 53
Query: 71 PNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTGAFRV 130
+ + ++ Q + V+++AG Q + + +L+ A V
Sbjct: 54 RD---LASHQEVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINV 110
Query: 131 SRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNNIHCN 190
R K Q +VM S + ++ Y A K A+ GL ++ +E + +
Sbjct: 111 LRELVKRYKDQP-VNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKII 169
Query: 191 VIVP 194
+ P
Sbjct: 170 AVYP 173
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 111 bits (280), Expect = 3e-30
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 13/192 (6%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
G+VA++TGA +G+G + A LA GA+V + +R + + E+ +
Sbjct: 4 ALQGKVALITGASSGIGEATARALAAEGAAVA---IAARR------VEKLRALGDELTAA 54
Query: 66 GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
G K V D + V + +E G +DI++NNAGI+ TDW + D
Sbjct: 55 GAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDT 114
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
+L G ++RAA PH+ + G +V +S +G + A Y A K + S TL E
Sbjct: 115 NLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEV 173
Query: 183 EKNNIHCNVIVP 194
+ + VI P
Sbjct: 174 TERGVRVVVIEP 185
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 111 bits (279), Expect = 6e-30
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
+V +VTGA +G GR+ A G +V+ G R + + + + +A
Sbjct: 6 KVWLVTGASSGFGRAIAEAAVAAGDTVI----GTARR--------TEALDDLVAAYPDRA 53
Query: 70 VPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTG 126
V DG++I L +GR+D+++NNAG + +F ++ + + + ++H+ G
Sbjct: 54 EAISLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFG 113
Query: 127 AFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNN 186
R++RA P M+++ G +V +S G L G + YSA K AL LS L+ E
Sbjct: 114 PARLTRALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFG 173
Query: 187 IHCNVIVP 194
I ++ P
Sbjct: 174 IKVLIVEP 181
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 105 bits (265), Expect = 8e-28
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 20/200 (10%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSK 65
R+ R+A+VTGA G+G + A L ++G VV G R + + AE +S
Sbjct: 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVV----GCARTVG-----NIEELAAECKSA 79
Query: 66 G--GKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
G G +P + + + I +DI INNAG+ R + S + W+ +
Sbjct: 80 GYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMF 139
Query: 121 DVHLTGAFRVSRAAWPHMKKQNY--GRLVMTASNSGLLG--NFGQANYSAAKMALVGLSN 176
+V++ +R A+ MK++N G ++ S SG YSA K A+ L+
Sbjct: 140 NVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTE 199
Query: 177 TLSIE--GEKNNIHCNVIVP 194
L E + +I I P
Sbjct: 200 GLRQELREAQTHIRATCISP 219
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 104 bits (261), Expect = 2e-27
Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 16/191 (8%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDG--DGKSSKAADTVVAEIR 63
++ ++TGA +G+G + A +E G ++ L +R + ++
Sbjct: 13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLL---LLARRVERLKALNLPNTLCAQVDVT 69
Query: 64 SKGGKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVH 123
K D + A + +G D ++NNAG++ +WQ + DV+
Sbjct: 70 DK--YTF---------DTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVN 118
Query: 124 LTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGE 183
+ G +A MK +N G ++ +S +G A Y K A+ +S + E
Sbjct: 119 VLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVA 178
Query: 184 KNNIHCNVIVP 194
+N+ I P
Sbjct: 179 ASNVRVMTIAP 189
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 103 bits (258), Expect = 4e-27
Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 16/188 (8%)
Query: 11 VAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAV 70
+ +VTGA AG G ++G V+ G+R + + E+ G
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVI---ATGRR------QERLQELKDEL---GDNLY 49
Query: 71 PNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDT-DWQLVQDVHLTG 126
V + I + + + IDI++NNAG+ A + DW+ + D + G
Sbjct: 50 IAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKG 109
Query: 127 AFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNN 186
++RA P M ++N+G ++ S +G G Y A K + S L +
Sbjct: 110 LVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTA 169
Query: 187 IHCNVIVP 194
+ I P
Sbjct: 170 VRVTDIEP 177
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 101 bits (255), Expect = 2e-26
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 15/191 (7%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
+TGA +G G + A AE G S+V L G+R + + E+ S +
Sbjct: 21 SSTLFITGATSGFGEACARRFAEAGWSLV---LTGRR------EERLQALAGEL-SAKTR 70
Query: 69 AVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDT-DWQLVQDVHL 124
+P V D + V E F + +INNAG+ A+ D DW + D ++
Sbjct: 71 VLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNI 130
Query: 125 TGAFRVSRAAWPHMKKQNYGR-LVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGE 183
G +R P + G +V S +G G Y K + S L + +
Sbjct: 131 KGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQ 190
Query: 184 KNNIHCNVIVP 194
+ + P
Sbjct: 191 GTGVRVTNLEP 201
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 101 bits (254), Expect = 3e-26
Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 18/198 (9%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERG---ASVVVNDLGGQRDGDGKSSKAADTVVAEI 62
R + ++TGA AG+G++ AL E ++ L +R + + + I
Sbjct: 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLI---LAARR------LEKLEELKKTI 80
Query: 63 RSK--GGKAVPNYNSVVDGDKI---VQTALENFGRIDIVINNAGILRDKSFARISDT-DW 116
+ K + +KI ++ + F IDI++NNAG T D
Sbjct: 81 DQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDI 140
Query: 117 QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSN 176
Q V D ++T +++A P + +N G +V S +G + Y A+K A+ ++
Sbjct: 141 QDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTD 200
Query: 177 TLSIEGEKNNIHCNVIVP 194
+L E I +I P
Sbjct: 201 SLRKELINTKIRVILIAP 218
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 97.5 bits (243), Expect = 2e-24
Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 16/192 (8%)
Query: 10 RVAIVTGAGAGLGRSYALLLAE---RGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
V ++TG +G+G A+ LA + V RD +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVY----ATLRDLKTQGRLWEAARALACPPGS 58
Query: 67 GKAVP----NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDV 122
+ + + SV + E GR+D+++ NAG+ + + V DV
Sbjct: 59 LETLQLDVRDSKSVAAA---RERVTE--GRVDVLVCNAGLGLLGPLEALGEDAVASVLDV 113
Query: 123 HLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLSNTLSIEG 182
++ G R+ +A P MK++ GR+++T S GL+G Y A+K AL GL +L++
Sbjct: 114 NVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLL 173
Query: 183 EKNNIHCNVIVP 194
+H ++I
Sbjct: 174 LPFGVHLSLIEC 185
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 81.6 bits (202), Expect = 7e-19
Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 21/175 (12%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAER-GASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
VA+VTG G+G + L VV+ RD V +++++G
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVL----TARD-----VTRGQAAVQQLQAEG 53
Query: 67 GKAVP------NYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQ 120
+ S+ + + +G +D+++NNAGI + ++
Sbjct: 54 LSPRFHQLDIDDLQSI---RALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTM 110
Query: 121 DVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGLS 175
+ G V P +K Q GR+V +S + + K ++
Sbjct: 111 KTNFFGTRDVCTELLPLIKPQ--GRVVNVSSIMSVRALKSCSPELQQKFRSETIT 163
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 81.5 bits (201), Expect = 1e-18
Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 47/213 (22%)
Query: 1 MPE---QVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADT 57
MPE R A+VTG G+G L+ G VV+ RD
Sbjct: 1 MPETCPNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVL----TCRD-----VTKGHE 51
Query: 58 VVAEIRSKGGKAV-PNYNSVVDGDKIVQTA----LENFGRIDIVINNAGI---------- 102
V ++++ + V + V D + + +FG++DI++NNAG+
Sbjct: 52 AVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRF 111
Query: 103 --------------------LRDKSFARISDTDWQLVQDVHLTGAFRVSRAAWPHMKKQN 142
+ + + ++ G V+ P ++ +
Sbjct: 112 KAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSD 171
Query: 143 YGRLVMTASNSGLLGNFGQANYSAAKMALVGLS 175
R+V +S++G L L+
Sbjct: 172 SPRIVNVSSSTGSLKYVSNETALEILGDGDALT 204
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 75.1 bits (185), Expect = 1e-16
Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 36/210 (17%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
+VTGA G+G L + + + RD + + + I+
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHI--IATARDVEKATE------LKSIKDSRVHV 55
Query: 70 VP----NYNSVVDGDKIVQTALENFGR--IDIVINNAGILRDK-SFARISDTDWQLVQDV 122
+P S+ D V E G + ++INNAG+L + + DV
Sbjct: 56 LPLTVTCDKSL---DTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDV 112
Query: 123 HLTGAFRVSRAAWPHMKK-----------QNYGRLVMTAS-------NSGLLGNFGQANY 164
+ T +++ P +K + ++ +S N+ F Y
Sbjct: 113 NTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAY 172
Query: 165 SAAKMALVGLSNTLSIEGEKNNIHCNVIVP 194
+K A+ TL+++ + +N+ P
Sbjct: 173 RMSKAAINMFGRTLAVDLKDDNVLVVNFCP 202
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 73.9 bits (182), Expect = 3e-16
Identities = 28/206 (13%), Positives = 65/206 (31%), Gaps = 29/206 (14%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
++TG GLG L R+ + + ++
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHL-FTTCRNREQAKE------LEDLAKNHSNI 74
Query: 70 ------VPNYNSVVDGDKIVQTALENFGRIDIVINNAGIL-RDKSFARISDTDWQLVQDV 122
+ N+++ ++ ++ ++++ NNAGI + + +
Sbjct: 75 HILEIDLRNFDAYDKLVADIEGVTKD-QGLNVLFNNAGIAPKSARITAVRSQELLDTLQT 133
Query: 123 HLTGAFRVSRAAWPHMKK-----------QNYGRLVMTASNSGLLGNFGQAN---YSAAK 168
+ +++A P +KK ++ +S G + Y +K
Sbjct: 134 NTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSK 193
Query: 169 MALVGLSNTLSIEGEKNNIHCNVIVP 194
AL + +LS++ I C + P
Sbjct: 194 SALNAATKSLSVDLYPQRIMCVSLHP 219
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 63.0 bits (154), Expect = 4e-12
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
R ++TGA +GLG A LA RGA+V++ RD K AA T+ ++
Sbjct: 15 AQRTVVITGANSGLGAVTARELARRGATVIM----AVRDTR-KGEAAARTMAGQVE---- 65
Query: 68 KAVPNYNSVVDGD----KIVQTALENFGRIDIVINNAGI 102
V + D V+ + D++INNAGI
Sbjct: 66 --------VRELDLQDLSSVRRFADGVSGADVLINNAGI 96
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 63.2 bits (154), Expect = 6e-12
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYAL-LLAERGASVVVNDLGGQRDGDGKSSKAADTVV 59
MP G V + G G LG A L+ ERG +V L +R G ++ A +V
Sbjct: 523 MPPVWDAAGTVLVTGGTG-ALGAEVARHLVIERGVRNLV--LVSRR---GPAASGAAELV 576
Query: 60 AEIRSKGGKAVPNYNSVVDGDKIVQ--TALENFGRIDIVINNAGILRDKSFARISDTDWQ 117
A++ + G + V D + + + ++ + + V++ AG+L D ++
Sbjct: 577 AQLTAYGAEVSLQACDVADRETLAKVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERLD 636
Query: 118 LVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGL 174
V + GA + P + LV+ +S SG+LG+ GQ NY+AA L L
Sbjct: 637 QVLRPKVDGARNLLELIDPDV------ALVLFSSVSGVLGSGGQGNYAAANSFLDAL 687
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 61.4 bits (149), Expect = 2e-11
Identities = 28/169 (16%), Positives = 45/169 (26%), Gaps = 20/169 (11%)
Query: 7 FDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKG 66
G+ A+V +G A LLA GA VV+ R D A + +
Sbjct: 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCG----RKLD-----KAQAAADSVNKRF 167
Query: 67 GKAVPNYNSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTG 126
V + + A E V I + WQ + +
Sbjct: 168 KVNV----TAAETADDASRA-EAVKGAHFVFTAGAI----GLELLPQAAWQNESSIEIVA 218
Query: 127 AFR-VSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGL 174
+ + + G+ G LG G + + L
Sbjct: 219 DYNAQPPLGIGGIDATDKGKEYGGKRAFGALG-IGGLKLKLHRACIAKL 266
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 54.9 bits (132), Expect = 5e-09
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 8 DGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGG 67
++TG G G A L RGA +V L + G + V E R +G
Sbjct: 1884 HKSY-VITGGLGGFGLQLAQWLRLRGAQKLV--LTSRS---GIRTGYQARQVREWRRQGV 1937
Query: 68 KAVPNYNSVVDGDKIVQTALENF---GRIDIVINNAGILRDKSFARISDTDWQLVQDVHL 124
+ + + ++ D ++ + G + V N A +LRD + +Q V
Sbjct: 1938 QVLVSTSNASSLDG-ARSLITEATQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKY 1996
Query: 125 TGAF---RVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYSAAKMALVGL 174
+G RV+R A P + V+ +S S GN GQANY A A+ +
Sbjct: 1997 SGTANLDRVTREACPELD-----YFVIFSSVSCGRGNAGQANYGFANSAMERI 2044
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 49.0 bits (117), Expect = 4e-07
Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 23/173 (13%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
+ G V ++TG +GR A LA GA +V L +R G + A +
Sbjct: 252 GAASWQPSGTV-LITGGMGAIGRRLARRLAAEGAERLV--LTSRR---GPEAPGAAELAE 305
Query: 61 EIRSKGGKAVPNYNSVVDGDKIVQTALENF---GRIDIVINNAGILRDKSFARISDTDWQ 117
E+R G + V D + AL + V + AGIL D A I +
Sbjct: 306 ELRGHGCEVV-----HAACDVAERDALAALVTAYPPNAVFHTAGILDD---AVIDTLSPE 357
Query: 118 LVQDVHLTGAFRVSRAAWPHMKKQNYGRL---VMTASNSGLLGNFGQANYSAA 167
+ V +V A H + L V+ +S +G GN GQ Y+AA
Sbjct: 358 SFETVR---GAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNAGQGAYAAA 407
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 5e-07
Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 46/171 (26%)
Query: 42 GGQRDGDGK----SSKAADTV---------------VAEIRSKGGKAVPNYNSVVDGDKI 82
G Q G G +SKAA V + +I + + G +I
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 83 VQTALENFGRIDIVINNAGILRDKS-FARI----SDTDWQLVQDV-HLTG----A-FRVS 131
EN+ + G L+ + F I + ++ + + T A +
Sbjct: 1685 R----ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 132 RAAWPHMKKQNYGRLVMTASNSGL-LGNFGQANYSAAKMALVGLSNTLSIE 181
+AA+ +K + G + A+ +G LG Y+A L L++ +SIE
Sbjct: 1741 KAAFEDLKSK--GLIPADATFAGHSLGE-----YAA----LASLADVMSIE 1780
Score = 46.6 bits (110), Expect = 3e-06
Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 23/105 (21%)
Query: 5 VRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRS 64
V + G V LGRS ++A V S +A VV +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA----------SFSQEALQYVVERVGK 1835
Query: 65 KGGKAVP--NYNS-----VVDGDKI-VQTA---LENFG--RIDIV 96
+ G V NYN V GD + T L +IDI+
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Score = 33.5 bits (76), Expect = 0.057
Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 60/188 (31%)
Query: 17 AGAGLGRSY------ALL-LAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRS--KGG 67
A R + AL G + +V GGQ G+ D E+R +
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--GN------TDDYFEELRDLYQ-- 178
Query: 68 KAVPNYNSVVDGDKIVQTA--LENFGR------------IDIV--INNAGILRDKSF--- 108
Y+ +V GD I +A L R ++I+ + N DK +
Sbjct: 179 ----TYHVLV-GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 109 ARISDTDW---QLVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTASNSGLLGNFGQANYS 165
IS ++Q H + V+ K + + + G G+ Q +
Sbjct: 234 IPIS---CPLIGVIQLAH----YVVTA------KLLGFTPGELRSYLKGATGH-SQGLVT 279
Query: 166 AAKMALVG 173
A +A
Sbjct: 280 AVAIAETD 287
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 48.2 bits (115), Expect = 8e-07
Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 41/183 (22%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAE 61
++ G V +VTG G+G A LAE+GA+ +V L +R G + A + AE
Sbjct: 233 GKRPPVHGSV-LVTGGTGGIGGRVARRLAEQGAAHLV--LTSRR---GADAPGAAELRAE 286
Query: 62 IRSKGGKAVPNYNSVVDGDKIVQTALENF-------GRIDIVINNAGILRDKSFARISDT 114
+ G + + D + AL + V ++AG+ D A ++D
Sbjct: 287 LEQLGVRVT-----IAACDAADREALAALLAELPEDAPLTAVFHSAGVAHD--DAPVADL 339
Query: 115 DWQLVQDVHLTGAFRV-SRAAWPHMKKQNYGRL---------VMTASNSGLLGNFGQANY 164
L R AA + L V+ +S + + G+ GQ Y
Sbjct: 340 TLG-----QLDALMRAKLTAAR------HLHELTADLDLDAFVLFSSGAAVWGSGGQPGY 388
Query: 165 SAA 167
+AA
Sbjct: 389 AAA 391
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 47.5 bits (113), Expect = 1e-06
Identities = 37/183 (20%), Positives = 58/183 (31%), Gaps = 26/183 (14%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVV------NDLGGQRDGDGKSSKAA 55
+ DG V +VTGA A LA GA ++ G +
Sbjct: 245 SPWWQADGTV-LVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGL 303
Query: 56 DTVVAEIRSKGGKAVPNYNSVVDGDKIVQTALENF-------GRIDIVINNAGILRDKSF 108
+VAE+ G A +VV D A + V++ +
Sbjct: 304 AGLVAELADLGATA-----TVVTCDLTDAEAAARLLAGVSDAHPLSAVLHLPPTVDS--- 355
Query: 109 ARISDTDWQLVQDVH---LTGAFRVSRAAWPH-MKKQNYGRLVMTASNSGLLGNFGQANY 164
++ TD + V T A + R LV+ +S + + G GQ Y
Sbjct: 356 EPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGGAGQGAY 415
Query: 165 SAA 167
+A
Sbjct: 416 AAG 418
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 45.5 bits (108), Expect = 5e-06
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 42/183 (22%)
Query: 2 PEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAE 61
++ + G V +VTG G+G A LA RGA ++ L + G + A +VAE
Sbjct: 220 DDEWKPTGTV-LVTGGTGGVGGQIARWLARRGAPHLL--LVSRS---GPDADGAGELVAE 273
Query: 62 IRSKGGKAVPNYNSVVDGDKIVQTALEN-FGRIDI------VINNAGILRDKSFARISDT 114
+ + G + V D + ++ G I V + A L D +
Sbjct: 274 LEALGARTT-----VAACDVTDRESVRELLGGIGDDVPLSAVFHAAATLDD---GTVDTL 325
Query: 115 DWQLVQDVHLTGAFRV-SRAAWPHMKKQNYGRL---------VMTASNSGLLGNFGQANY 164
+ + A R A N L V+ +S + G G Y
Sbjct: 326 TGE-----RIERASRAKVLGAR------NLHELTRELDLTAFVLFSSFASAFGAPGLGGY 374
Query: 165 SAA 167
+
Sbjct: 375 APG 377
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 44.9 bits (106), Expect = 1e-05
Identities = 48/206 (23%), Positives = 73/206 (35%), Gaps = 47/206 (22%)
Query: 5 VRFDGRVAIVTGAGAG-LGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIR 63
V F + ++TGAG G +G L + GA VVV +S+ + V +
Sbjct: 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVT-----------TSRFSKQVTDYYQ 520
Query: 64 -------SKGGK--AVP-NYNSVVDGDKIVQ-----TALENFG-RIDIVINNAGILRDKS 107
+KG VP N S D + +++ G +D +I A I
Sbjct: 521 SIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGI 580
Query: 108 FARISDTDWQ--LVQDVHLTGAFRVSRAAWPHMKKQNYGRLVMTAS---------NSGLL 156
+ D + + LT R+ +KKQ R + T N G
Sbjct: 581 --ELEHIDSKSEFAHRIMLTNILRM----MGCVKKQKSARGIETRPAQVILPMSPNHGTF 634
Query: 157 GNFGQANYSAAKMALVGLSNTLSIEG 182
G G YS +K++L L N E
Sbjct: 635 GGDG--MYSESKLSLETLFNRWHSES 658
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 1e-04
Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 68/210 (32%)
Query: 26 ALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAVPNYN----SV--VDG 79
ALL +V+++ + G GK+ A D S + ++ ++ +
Sbjct: 143 ALLELRPAKNVLIDGVLGS----GKTWVALDVC----LSYKVQCKMDFKIFWLNLKNCNS 194
Query: 80 DKIVQTALENF-GRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTGAFRVSRAAWPHM 138
+ V L+ +ID N D S +Q + R +
Sbjct: 195 PETVLEMLQKLLYQID---PNWTSRSDHSSNIKLRIHS--IQA-------ELRR----LL 238
Query: 139 KKQNYGR--LVM-TASNSGLLGNFGQANYSAAKMALVGLSNTLSIEGEKNNIHCNVIVPT 195
K + Y LV+ N+ F N+ C +++ T
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAF--------------------------NLSCKILLTT 272
Query: 196 AASRLTEDILPPGSY-------PVKGFDPP 218
++T D L + P
Sbjct: 273 RFKQVT-DFLSAATTTHISLDHHSMTLTPD 301
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 34.2 bits (79), Expect = 0.031
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV----NDLGGQ 44
RV +V GAG +GL A L RG VV+ DLGG+
Sbjct: 393 RVLVV-GAGPSGL--EAARALGVRGYDVVLAEAGRDLGGR 429
Score = 33.8 bits (78), Expect = 0.044
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 8/135 (5%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
+V + LG A LLA++G V + G Q ++ + + + G
Sbjct: 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVA 583
Query: 69 AVPN--YNSVVDGDKIVQTALENFGRI---DIVINNAGI--LRDKSFARISDTDWQLVQD 121
V + +V G V+ + R D V+ + ++ D +
Sbjct: 584 RVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPREELYLDLVARRDAGEIAS 643
Query: 122 VHLTG-AFRVSRAAW 135
V G A+ A
Sbjct: 644 VRGIGDAWAPGTIAA 658
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 33.9 bits (78), Expect = 0.036
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV----NDLGGQ 44
V IV GAG +G A +L E G +V + +GG
Sbjct: 391 SVLIV-GAGPSGS--EAARVLMESGYTVHLTDTAEKIGGH 427
Score = 30.4 bits (69), Expect = 0.54
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 2/100 (2%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
RV I+ + S A LA G V + G + ++ + +
Sbjct: 529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVS-GVHLANYMHFTLEYPNMMRRLHELHVE 587
Query: 69 AVPNYN-SVVDGDKIVQTALENFGRIDIVINNAGILRDKS 107
+ ++ S ++ ++ + G RD +
Sbjct: 588 ELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDAN 627
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 33.5 bits (77), Expect = 0.050
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 8/40 (20%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV----NDLGGQ 44
+A+V GAG AGL ++A+ A RG V + +++GGQ
Sbjct: 375 NLAVV-GAGPAGL--AFAINAAARGHQVTLFDAHSEIGGQ 411
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 32.7 bits (75), Expect = 0.066
Identities = 29/144 (20%), Positives = 46/144 (31%), Gaps = 42/144 (29%)
Query: 14 VTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAVPNY 73
VTGA LGR LA + + DL S A PN
Sbjct: 8 VTGAAGQLGRVMRERLAPMAEILRLADL----------------------SPLDPAGPNE 45
Query: 74 NSVVDGD----KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTGAFR 129
V D V + D +++ GI +K ++ + ++ G +
Sbjct: 46 -ECVQCDLADANAVNAMVAGC---DGIVHLGGISVEKP--------FEQILQGNIIGLYN 93
Query: 130 VSRAAWPHMKKQNYGRLVMTASNS 153
+ AA + R+V +SN
Sbjct: 94 LYEAA----RAHGQPRIVFASSNH 113
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 32.7 bits (74), Expect = 0.068
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAA 55
RV ++ G+G GL S AL+LA +G SV + L D S A
Sbjct: 8 RVVVL-GSGVIGL--SSALILARKGYSVHI--LARDLPEDVSSQTFA 49
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for
structural genomics; HET: MSE; 1.50A {Streptococcus
agalactiae}
Length = 451
Score = 32.6 bits (75), Expect = 0.080
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 10 RVAIVTGAGAGL-GRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTV 58
+V ++ G G + A LLA+ GA V VND + S + +
Sbjct: 11 KVLVL---GLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGI 57
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding,
cell cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A
{Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A*
2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A*
2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A*
2uag_A*
Length = 439
Score = 32.5 bits (75), Expect = 0.10
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 11/60 (18%)
Query: 10 RVAIVTGAGAGL-GRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
V I+ G GL G S RG + V D + D + + G
Sbjct: 7 NVVII---GLGLTGLSCVDFFLARGVTPRVMD-------TRMTPPGLDKLPEAVERHTGS 56
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER;
HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 32.0 bits (72), Expect = 0.15
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVVND----LGGQRDGDGKSSKAA 55
RV ++ GAG GL S AL + ER SV+ + + AA
Sbjct: 2 RVVVI-GAGVIGL--STALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAA 49
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 31.4 bits (71), Expect = 0.27
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 5 VRFDGRVAIVTGAGAG-LGRSYALLLAERGASVVV 38
+ F G+ A++TGAGAG +G L GA V+V
Sbjct: 648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIV 682
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 31.2 bits (71), Expect = 0.28
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 12/46 (26%)
Query: 12 AIVTGAG-AGLGRSYALLLAERGASVVV----NDLGG-----QRDG 47
A+V GAG GL LA G ++V +GG G
Sbjct: 3 AVVVGAGLGGL--LAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKG 46
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 30.7 bits (70), Expect = 0.30
Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 29/140 (20%)
Query: 14 VTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAVPNY 73
V GA LG A + G +V+ + + VAE+ G
Sbjct: 18 VLGATGLLGHHAARAIRAAGHDLVLIHRPSS-QIQRLAYLEPECRVAEMLDHAG------ 70
Query: 74 NSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTGAFRVSRA 133
++ AL +D VI +AG WQ L A
Sbjct: 71 ---------LERALRG---LDGVIFSAGY------YPSRPRRWQEEVASALGQTNPFYAA 112
Query: 134 AWPHMKKQNYGRLVMTASNS 153
+ R++ S
Sbjct: 113 C----LQARVPRILYVGSAY 128
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 31.1 bits (70), Expect = 0.30
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 5 VRFDGRVAIVTGAGAG-LGRSYALLLAERGASVVV 38
V F + ++TGAG G +G L + GA VVV
Sbjct: 671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVV 705
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 30.8 bits (70), Expect = 0.34
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVV 59
++ IV G G LG +A L G + + D + AD V+
Sbjct: 22 HKIVIVGGYGK-LGGLFARYLRASGYPISILDREDWAVAE-SILANADVVI 70
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 30.8 bits (70), Expect = 0.37
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 12/46 (26%)
Query: 12 AIVTGAG-AGLGRSYALLLAERGASVVV----NDLGG-----QRDG 47
+V GAG GL A L++ G V V GG G
Sbjct: 3 TVVIGAGLGGL--LSAARLSKAGHEVEVFERLPITGGRFTNLSYKG 46
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 30.0 bits (68), Expect = 0.42
Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 32/135 (23%)
Query: 14 VTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAVPNY 73
V GA + R L +G V R+ + E+R +G
Sbjct: 26 VVGANGKVARYLLSELKNKGHEPV----AMVRNEEQ---------GPELRERGASD---- 68
Query: 74 NSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTGAFRVSRA 133
+V + + + F ID V+ AG + D GA + +
Sbjct: 69 --IVVAN-LEEDFSHAFASIDAVVFAAGSGPHTGADKTILIDLW--------GAIKTIQE 117
Query: 134 AWPHMKKQNYGRLVM 148
A +K+ R +M
Sbjct: 118 A----EKRGIKRFIM 128
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 30.0 bits (68), Expect = 0.45
Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 34/140 (24%)
Query: 14 VTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAVPNY 73
VTGA G+G + L V ++D+ G + + V ++
Sbjct: 7 VTGAAGGVGSAIRPHLGTLAHEVRLSDIVDL----GAAEAHEEIVACDLADAQA------ 56
Query: 74 NSVVDGDKIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTGAFRVSRA 133
V +++ D +I+ G+ ++ W + ++ GA+ + A
Sbjct: 57 ---------VHDLVKDC---DGIIHLGGVSVERP--------WNDILQANIIGAYNLYEA 96
Query: 134 AWPHMKKQNYGRLVMTASNS 153
A + R+V +SN
Sbjct: 97 A----RNLGKPRIVFASSNH 112
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 30.5 bits (69), Expect = 0.46
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVV---NDLGGQR 45
M E +D V +V G G +G + A +AERG V+V + +
Sbjct: 1 MTE--SYD--VVVV-GGGP-VGLATAWQVAERGHRVLVLERHTFFNEN 42
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A
3a97_A 3adp_A* 3f3s_A*
Length = 319
Score = 30.0 bits (68), Expect = 0.51
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 9 GRVAIVTGAGAGL-GRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRS 64
G V IV G+GL GRS+A+L A G V + D + + IR
Sbjct: 7 GDVLIV---GSGLVGRSWAMLFASGGFRVKLYD---------IEPRQITGALENIRK 51
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 30.1 bits (67), Expect = 0.53
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAA-------DTVVAE 61
+ +V GA G G + + A + LG + G+ K
Sbjct: 47 PKRVLVIGASTGYGLAARITAAFGCG---ADTLGVFFERPGEEGKPGTSGWYNSAAFHKF 103
Query: 62 IRSKGGKAVP-NYNSVVDGDK--IVQTALENFGRIDIVINNAG 101
KG A N ++ D K + ++ G++D VI +
Sbjct: 104 AAQKGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLA 146
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 30.2 bits (67), Expect = 0.65
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 12 AIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGD 48
++ G+G G +YA L G V + D+G G
Sbjct: 49 VVIVGSGPI-GCTYARELVGAGYKVAMFDIGEIDSGL 84
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 30.0 bits (68), Expect = 0.66
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVV---NDLGGQR 45
++D + I+ G+G+ +G + G +V++ + Q
Sbjct: 2 KYD--LIII-GSGS-VGAAAGYYATRAGLNVLMTDAHMPPHQH 40
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 29.6 bits (67), Expect = 0.91
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV 38
R+A+V G +GL + AL+L + G V V
Sbjct: 7 RIAVV-GGSISGL--TAALMLRDAGVDVDV 33
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 29.4 bits (66), Expect = 0.94
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 1 MPEQVRFDGRVAIVTGAG-AGLGRSYALLLAERGASVVV 38
M E ++D ++ G G AG S A L+ RG +++
Sbjct: 2 MKEL-KYD---VLIIGGGFAGS--SAAYQLSRRGLKILL 34
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 29.4 bits (66), Expect = 1.1
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSY-ALLLAERGASVVV 38
M + + D V ++ GAG + A L+ + G V +
Sbjct: 1 MQRE-KVD--VLVI---GAGPAGTVAASLVNKSGFKVKI 33
>2kw5_A SLR1183 protein; structural genomics, northeast structural
genomics consortium (NESG), PSI-2, protein structure
initiative, unknown function; NMR {Synechocystis} PDB:
3mer_A
Length = 202
Score = 28.7 bits (64), Expect = 1.1
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDL 41
G++ + G GR A LA G V D
Sbjct: 31 GKILCL---AEGEGR-NACFLASLGYEVTAVDQ 59
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 28.9 bits (64), Expect = 1.3
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 2 PEQVRFDG-RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVA 60
E + F G ++A++ G G +GR+ A LA+ G V + G RD ++A A
Sbjct: 12 HENLYFQGMKIAVL-GTGT-VGRTMAGALADLGHEVTI----GTRDPKATLARAEPD--A 63
Query: 61 EIRSKGGKAVPNYNSVVDGD 80
+ +P + V
Sbjct: 64 MGAPPFSQWLPEHPHVHLAA 83
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 28.7 bits (64), Expect = 1.5
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV 38
++ +V G+G AG + LL A V +
Sbjct: 8 QICVV-GSGPAGFYTAQHLLKHHSRAHVDI 36
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 28.5 bits (64), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV 38
VAI+ G G GL + A LL + G V V
Sbjct: 28 NVAII-GGGPVGL--TMAKLLQQNGIDVSV 54
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 28.4 bits (64), Expect = 1.9
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 10 RVAIVTGAG-AGLGRSYALLLAERGASVVV 38
+ ++ GAG GL S A+ L + G V
Sbjct: 25 KAIVI-GAGIGGL--SAAVALKQSGIDCDV 51
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 28.5 bits (64), Expect = 2.0
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 1 MPEQVRFDGRVAIVTGAG-AGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKA 54
M + D V I+ G G G+ + AL LA R +V + Q DG +
Sbjct: 21 MNAPIETD--VLIL-GGGPVGM--ALALDLAHRQVGHLVVE---QTDGTITHPRV 67
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 28.4 bits (63), Expect = 2.0
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 6 RFDGRVAIVTGAG-AGLGRSYALLLAERGASVVV 38
R VAI+ G G AG L L + G V +
Sbjct: 23 RSK--VAII-GGGPAGS--VAGLTLHKLGHDVTI 51
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND
FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2
d.16.1.1 PDB: 3cox_A*
Length = 507
Score = 28.6 bits (63), Expect = 2.1
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 1 MPEQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVV 38
+ + R A+V G+G G G AL L + G +
Sbjct: 6 LADGDRVP---ALVIGSGYG-GAVAALRLTQAGIPTQI 39
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 28.4 bits (63), Expect = 2.3
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 6 RFDGRVAIVTGAGAGLGRSY-ALLLAERGASVVV 38
FD + ++ G G G S A +A RG V++
Sbjct: 7 VFD--LIVI---GGGPGGSTLASFVAMRGHRVLL 35
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 28.2 bits (62), Expect = 2.4
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 10/102 (9%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAER-GASVVVNDLGGQRDGDGKSS---KAADTVVAEIRS 64
+ +V GA +G G + + A GA + + + ++
Sbjct: 61 PKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKA 120
Query: 65 KGGKAVPNYNSVVDGDKIVQTALENF-----GRIDIVINNAG 101
G + + N D +E G++D+V+ +
Sbjct: 121 AGLYS-KSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLA 161
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 27.9 bits (63), Expect = 2.5
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVV---NDLGGQ 44
++ G G +G + A LA+ + + +GG+
Sbjct: 19 EAVVI-GGG-IIGSAIAYYLAKENKNTALFESGTMGGR 54
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L)
stereospecific opine dehydrogenase, oxidoreductase;
1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 28.1 bits (62), Expect = 2.7
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVV 38
A++ G G G G ++A LA +G SV+
Sbjct: 6 TYAVL-GLGNG-GHAFAAYLALKGQSVLA 32
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 28.1 bits (62), Expect = 2.8
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 12 AIVTGAGAGLGRSYALLLAERGASVVV 38
A+V G G G AL L E G ++
Sbjct: 8 AVVIGTGYG-AAVSALRLGEAGVQTLM 33
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 27.7 bits (62), Expect = 3.0
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 6 RFDGRVAIVTGAG-AGLGRSYALLLAERGASVVV 38
+D V +V G G G + A A+ G ++
Sbjct: 4 TYD--VLVV-GGGPGGS--TAARYAAKYGLKTLM 32
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group
transfer, pyrimidine biosynthesis, transferase; 2.40A
{Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A*
2bmu_A* 2bri_A*
Length = 244
Score = 27.7 bits (62), Expect = 3.0
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 4 QVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGG 43
+V D VA+V G G L R Y + + +S D G
Sbjct: 50 KVSEDHEVAVVVGGGK-LARKYIEVAEKFNSSETFKDFIG 88
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 27.6 bits (62), Expect = 3.1
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 1 MPEQVRFDGRVAIVTGAG-AGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKA 54
R D V +V GAG AGL A L G V+V + Q S+
Sbjct: 5 HHHHHRSDASVIVV-GAGPAGL--MLAGELRLGGVDVMVLE---QLPQRTGESRG 53
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 27.6 bits (62), Expect = 3.2
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 14 VTGAGAGLGRSY------ALLLAERGASVVVND-L--GGQRDGDGKSSKAADTVVAEIRS 64
V G GAG Y LL + SVV+ D L + ++ + + +
Sbjct: 7 VCG-GAG----YIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDG 61
Query: 65 KGGKAVPNYNSVVDGD----KIVQTALENFGRIDIVINNAG 101
Y ++ GD + G ID V++
Sbjct: 62 PKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCA 102
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 27.8 bits (62), Expect = 3.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVV 38
+ +V GAG G G++ A E+GA VV+
Sbjct: 364 SKTVVVIGAG-GAGKALAYGAKEKGAKVVI 392
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 27.7 bits (61), Expect = 3.4
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 11 VAIVTGAGAGL-GRSYALLLAERGASVVV----NDLGG 43
IV G+GL G A L + V+V N +GG
Sbjct: 4 YIIV---GSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 27.6 bits (61), Expect = 3.4
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 17/67 (25%)
Query: 11 VAIVTGAG-AGLGRSYALLLAERGASVVV----NDLGGQ-------RDGDGKSS-KAADT 57
VAI+ G G AG+G A L ++ +V + LGG ++G K S K +
Sbjct: 111 VAII-GGGPAGIG---AALELQQYLTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEE 166
Query: 58 VVAEIRS 64
+V ++
Sbjct: 167 LVGKLNE 173
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 27.6 bits (62), Expect = 3.5
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 9 GRVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQR 45
G +V GAG +G L GA VV +R
Sbjct: 169 GTTVLVIGAGP-IGLVSVLAAKAYGAFVVCTARSPRR 204
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 27.4 bits (61), Expect = 3.9
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 13 IVTGAG-AGLGRSYALLLAERGASVVV 38
++ G+G AGL + A+ + GA V++
Sbjct: 130 VIIGSGGAGL--AAAVSARDAGAKVIL 154
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 27.7 bits (62), Expect = 3.9
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 11 VAIVTGAGAGLGRSYALLLAERGASVVV 38
V +V GAG S A+ + GA V++
Sbjct: 129 VVVVGSGGAGF--SAAISATDSGAKVIL 154
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 27.3 bits (61), Expect = 4.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 11 VAIVTGAG-AGLGRSYALLLAERGASVVV 38
VAI+ GAG +GL LL + G V+
Sbjct: 5 VAII-GAGPSGL--LLGQLLHKAGIDNVI 30
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 27.4 bits (60), Expect = 4.1
Identities = 19/136 (13%), Positives = 29/136 (21%), Gaps = 31/136 (22%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKA 69
VA++ G +G S A +L V R
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGP-----------------WKVYGVARRTRPAW 44
Query: 70 VPNYN-SVVDGD----KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHL 124
+ + V D Q L + V R Q + +
Sbjct: 45 HEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVTWANRS---------TEQENCEANS 95
Query: 125 TGAFRVSRAAWPHMKK 140
V A P+
Sbjct: 96 KMFRNVLDAVIPNCPN 111
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 27.3 bits (61), Expect = 4.2
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 13 IVTGAG-AGLGRSYALLLAERGASVVV 38
+V GAG AG + +L + GA+V++
Sbjct: 125 LVVGAGSAGF--NASLAAKKAGANVIL 149
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics,
protein structure initiative, midwest center for
structural genomics, kinase; 2.30A {Pseudomonas
syringae PV}
Length = 228
Score = 26.9 bits (60), Expect = 4.7
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 9 GRVAIVTGAGAGLGRSYALL-----LAERGASVVV 38
GR+ + GA G+G++YA+L +G V+
Sbjct: 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMA 39
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 27.3 bits (61), Expect = 4.9
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 13 IVTGAGAGLGRSYALLLAERGASVVV 38
+V G G G + ++ A GA V+V
Sbjct: 45 VVAGYGIA-GVAASIEAARAGADVLV 69
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 27.1 bits (61), Expect = 4.9
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 16/64 (25%)
Query: 10 RVAIVTGAGAG-LGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
V++ G G + ++ L GA +VV D+ + A VAE +G
Sbjct: 175 AVSV---QGLGNVAKALCKKLNTEGAKLVVTDV---------NKAAVSAAVAE---EGAD 219
Query: 69 AVPN 72
AV
Sbjct: 220 AVAP 223
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 27.1 bits (61), Expect = 5.0
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 24/112 (21%)
Query: 10 RVAIVTGAGAGLGRSYALLLAERGAS--VVVNDLG-GQRDGDGKS-----SKAADTVVAE 61
+V I+ GA +G + ALLLA+ +V+ +G + A A
Sbjct: 2 KVTII-GASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDAN 60
Query: 62 IRSKGGKAVPNYNSVVDGDKIVQTALENFG--------RIDIVINNAGILRD 105
I + + N + + D ++ T+ G R+D+ NA I+
Sbjct: 61 IYVESDE---NLRIIDESDVVIITS----GVPRKEGMSRMDLAKTNAKIVGK 105
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 26.9 bits (60), Expect = 5.3
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 12 AIVTGAGAGLGRSYALLLAERGASVVV 38
IV GAG+ +G + LA++G ++
Sbjct: 6 VIVVGAGS-MGMAAGYQLAKQGVKTLL 31
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 27.3 bits (61), Expect = 5.4
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 11 VAIVTGAG-AGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKA 54
V +V GAG AG+ A L G VVV + + S+
Sbjct: 14 VIVV-GAGPAGM--MLAGELRLAGVEVVVLE---RLVERTGESRG 52
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 26.7 bits (60), Expect = 5.4
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 6 RFDGRVAIVTGAGAGLGRSYALLLAERGASVVV 38
+ + + A++ GAG G ++ A L ++G V V
Sbjct: 115 QKNYQNALILGAG-GSAKALACELKKQGLQVSV 146
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
{Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Length = 677
Score = 26.9 bits (59), Expect = 5.8
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 8 DGR--VAIVTGAGAGLGRSYALLLAERGASVVVNDLGGQRD 46
DGR V++ G G G + + +V +GG+
Sbjct: 530 DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKAR 570
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 27.0 bits (60), Expect = 5.9
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 11 VAIVTGAG-AGLGRSYALLLAERGASVVV 38
V +V GAG GL S A+ LA +G V+V
Sbjct: 8 VLVV-GAGLGGL--STAMFLARQGVRVLV 33
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1,
ATP-grAsp domain, carbamoylphosphate synthase subunit
(split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 26.7 bits (59), Expect = 5.9
Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 15/85 (17%)
Query: 13 IVTGAGAGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAVPN 72
++T AG + + V D + AD VP
Sbjct: 8 LITSAGRRAKLVEYFVKEFKTGRVSTAD----CSPLASALYMADQHY---------IVPK 54
Query: 73 YNSVVDGDKIVQTALENFGRIDIVI 97
+ V D ++ + + ++
Sbjct: 55 IDEVEYIDHLLTLCQDE--GVTALL 77
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 26.8 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 1 MPEQVRFDGRVAIVTGAG-AGLGRSYALLLAERGASVVV 38
M + D V I G G G A LL +G VVV
Sbjct: 2 MTDN-HID--VLIN-GCGIGGA--MLAYLLGRQGHRVVV 34
>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN;
1.94A {Fusarium oxysporum}
Length = 327
Score = 26.6 bits (59), Expect = 6.0
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 96 VINNAGILRDKSFARISDTDWQLVQDVHLTGAFRVSRAAWPHMK 139
+N G RD F R+ + + AFR++ AA P K
Sbjct: 132 ALNEDGTYRDSVFLRVIGEAY-------IPIAFRMALAADPTTK 168
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 26.7 bits (60), Expect = 6.4
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 3 EQVRFDGRVAIVTGAGAGLGRSYALLLAERGASVVV 38
+ +V GAG G R+ L + GA V +
Sbjct: 123 LIPEVKEKSILVLGAG-GASRAVIYALVKEGAKVFL 157
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 26.5 bits (58), Expect = 6.6
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 18 GAGLGRSYALLLAERGASVVVNDL 41
G G +++L E G SV D
Sbjct: 65 ACGTGV-DSIMLVEEGFSVTSVDA 87
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 26.8 bits (60), Expect = 6.7
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 13 IVTGAG-AGLGRSYALLLAERGASVVV 38
+ G+G AGL S + L G V +
Sbjct: 3 YIIGSGIAGL--SAGVALRRAGKKVTL 27
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 26.6 bits (59), Expect = 7.5
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 11 VAIVTGAG-AGLGRSYALLLAERGASVVVNDLGGQRDGDGKSSKA 54
V +V G G GL A L G +V + + +A
Sbjct: 52 VVVV-GGGPVGL--MLAGELRAGGVGALVLE---KLVEPVGHDRA 90
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1,
structural genomics, structu genomics consortium, SGC,
metallopeptidase M20 family; 2.26A {Homo sapiens}
Length = 485
Score = 26.5 bits (59), Expect = 8.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 28 LLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGK 68
L GA V D+G Q+ DG+S ++AE+ S K
Sbjct: 62 TLQRLGARVASVDMGPQQLPDGQSLPIPPVILAELGSDPTK 102
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 26.5 bits (59), Expect = 8.3
Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 39/144 (27%)
Query: 13 IVTGAGAG-LGRSYALLLAERGASVVVNDLGGQRDGDGKSSKAADTVVAEIRSKGGKAVP 71
+VTG +G +G LAE+ V + ++I + +
Sbjct: 3 LVTG-SSGQIGTELVPYLAEKYGKKNV-------------------IASDIVQRDTGGIK 42
Query: 72 NYNSVVDGD----KIVQTALENFGRIDIVINNAGILRDKSFARISDTDWQLVQDVHLTGA 127
+ D + A+E + ID + + AGIL K D L V++ G
Sbjct: 43 ----FITLDVSNRDEIDRAVEKYS-IDAIFHLAGILSAKGEK-----DPALAYKVNMNGT 92
Query: 128 FRVSRAAWPHMKKQNYGRLVMTAS 151
+ + AA K+ ++V+ ++
Sbjct: 93 YNILEAA----KQHRVEKVVIPST 112
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase,
structural genomics, NPPSFA; HET: THM; 1.75A {Thermus
thermophilus} SCOP: d.114.1.1 d.159.1.2
Length = 552
Score = 26.5 bits (59), Expect = 8.7
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 57 TVVAEIRSKGGKAVPNYNSVV---DGDK--IVQTA--LENFGRIDIVINNAGILRDKSFA 109
T++ K Y +VV +G +VQ + G +++ + G L
Sbjct: 241 TLLGSFPHKELSPAGPYPTVVKNPEGKDVLVVQAWEWGKVVGLLEVTFDAKGELLAYKGE 300
Query: 110 RISDTDWQLVQD 121
+ T +D
Sbjct: 301 ALLMTPEAAPED 312
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent
methyltransferase; NP_104914.1; HET: MSE; 1.60A
{Mesorhizobium loti}
Length = 243
Score = 26.3 bits (58), Expect = 9.0
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 2 PEQVRFDGRVAIVTG-----AGAGLGRSYALLLAERGASVVV 38
E + V G G G G + E GAS V+
Sbjct: 30 AEWPALRAMLPEVGGLRIVDLGCGFGW-FCRWAHEHGASYVL 70
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central
beta-sheet surrounded by five alpha-helices; 8.80A {Homo
sapiens}
Length = 239
Score = 26.1 bits (58), Expect = 9.4
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 21/58 (36%)
Query: 68 KAVPNYNSVVDGDKIVQTALENFGRIDI-------------VINNAGILRDKSFARIS 112
VP NS I Q +D+ ++ NA K I+
Sbjct: 81 LKVPEANSSWMDTVIRQ-----NHVVDVSVAVSTPAGLITPIVFNAH---IKGVETIA 130
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related
protein; ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 26.0 bits (57), Expect = 9.5
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 18 GAGLGRSYALLLAERGASVVVNDL 41
G G G+ ++L L ERG VV+ D
Sbjct: 62 GGGTGK-WSLFLQERGFEVVLVDP 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.386
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,485,848
Number of extensions: 214871
Number of successful extensions: 1399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 916
Number of HSP's successfully gapped: 328
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.7 bits)