RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16223
(153 letters)
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 141 bits (358), Expect = 8e-43
Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Query: 1 MNRASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITN-LEL 59
A PF IQAE T+ TN+ G C L PL++ RVVN+SS + + EL
Sbjct: 94 FKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPEL 153
Query: 60 KKRLMEDCVSERQLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKF 119
+++ + ++E +L +M +F++ TK+ H +GWP SAY V+KIGV +L+RI+ +K
Sbjct: 154 QQKFRSETITEEELVGLMNKFVEDTKKG--VHQKEGWPSSAYGVTKIGVTVLSRIHARKL 211
Query: 120 DCELGNQDKVINAVHPGYVATNMSSFMG 147
+ ++NA PG+V T+M+
Sbjct: 212 SEQRKGDKILLNACCPGWVRTDMAGPKA 239
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 116 bits (293), Expect = 7e-33
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 12 QAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLM-EDCV 68
AE+ + NY G+ L PLL+ R+VN+SSS G L ++N + L D +
Sbjct: 144 LAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDAL 203
Query: 69 SERQLTDMMYEFMDITKEHPRAHVAKGWPD--SAYAVSKIGVNLLTRIYQKKFDCELGNQ 126
+E ++ ++ + KE+ GWP +AY SK +N TR+ K
Sbjct: 204 TEERIDMVVNMLLKDFKEN--LIETNGWPSFGAAYTTSKACLNAYTRVLANKIP------ 255
Query: 127 DKVINAVHPGYVATNMSSFMG 147
+N V PG V T M+ +G
Sbjct: 256 KFQVNCVCPGLVKTEMNYGIG 276
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 59.7 bits (145), Expect = 1e-11
Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 52/147 (35%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRR-------------HARVVNLSSSAGHLSQITNLELK 60
+ + N +V L PLL+ A V+ +SS G
Sbjct: 107 AEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG----------- 155
Query: 61 KRLMEDCVSERQLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 120
+TD +P AY +SK +N+ R
Sbjct: 156 -----------SITDNTSGSAQ-------------FPVLAYRMSKAAINMFGRTLAV--- 188
Query: 121 CELGNQDKVINAVHPGYVATNMSSFMG 147
+L + + ++ PG+V TN+
Sbjct: 189 -DLKDDNVLVVNFCPGWVQTNLGGKNA 214
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 59.6 bits (145), Expect = 1e-11
Identities = 27/145 (18%), Positives = 42/145 (28%), Gaps = 24/145 (16%)
Query: 2 NRASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLEL 59
A P + NY G P L++ V +SS A
Sbjct: 68 LCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAH-------- 119
Query: 60 KKRLMEDCVSERQLTDMMYEFMDITKEHPRAHVAKGWP-DSAYAVSKIGVNLLTRIYQKK 118
++ + E + K A + AYA SK + + R K
Sbjct: 120 -------LAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVR----K 168
Query: 119 FDCELGNQDKV-INAVHPGYVATNM 142
G + V +N + PG T +
Sbjct: 169 RAAAWG-EAGVRLNTIAPGATETPL 192
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 53.3 bits (129), Expect = 2e-09
Identities = 27/132 (20%), Positives = 35/132 (26%), Gaps = 49/132 (37%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLR--RHARVVNLSSSAGHLSQITNLELKKRLMEDCVSER 71
+ + N L PLL+ A + SSS G
Sbjct: 120 MQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGR--------------------- 158
Query: 72 QLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-I 130
RA W AY VSK L + EL V
Sbjct: 159 ---------------KGRA----NW--GAYGVSKFATEGLMQTLAD----ELEGVTAVRA 193
Query: 131 NAVHPGYVATNM 142
N+++PG T M
Sbjct: 194 NSINPGATRTGM 205
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 51.2 bits (123), Expect = 1e-08
Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 56/147 (38%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRR-------------HARVVNLSSSAGHLSQITNLELK 60
T+ TN + + PLL++ A ++N+SS G
Sbjct: 128 LDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG----------- 176
Query: 61 KRLMEDCVSERQLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 120
+ AY SK +N T+
Sbjct: 177 -----------SIQGNT-----------------DGGMYAYRTSKSALNAATKSLSV--- 205
Query: 121 CELGNQDKVINAVHPGYVATNMSSFMG 147
+L Q + ++HPG+V T+M
Sbjct: 206 -DLYPQRIMCVSLHPGWVKTDMGGSSA 231
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 48.3 bits (116), Expect = 1e-07
Identities = 25/131 (19%), Positives = 35/131 (26%), Gaps = 49/131 (37%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLR--RHARVVNLSSSAGHLSQITNLELKKRLMEDCVSER 71
+ + N L PLL +V SSS G
Sbjct: 118 QDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGR--------------------- 156
Query: 72 QLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVIN 131
RA W AYA SK + ++ E + +V N
Sbjct: 157 ---------------QGRA----NW--GAYAASKFATEGMMQVLAD----EYQQRLRV-N 190
Query: 132 AVHPGYVATNM 142
++PG T M
Sbjct: 191 CINPGGTRTAM 201
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 47.2 bits (113), Expect = 3e-07
Identities = 29/143 (20%), Positives = 43/143 (30%), Gaps = 22/143 (15%)
Query: 2 NRASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLEL 59
A A + + NY G+ L L R V + S A L
Sbjct: 68 CCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAEL-- 125
Query: 60 KKRLMEDCVSERQLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKF 119
++E ++ + A G AYA SK V L R +
Sbjct: 126 --PMVEAMLAGD-----------EARAIELAEQQ-GQTHLAYAGSKYAVTCLAR----RN 167
Query: 120 DCELGNQDKVINAVHPGYVATNM 142
+ + +N V PG V T +
Sbjct: 168 VVDWAGRGVRLNVVAPGAVETPL 190
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 47.1 bits (113), Expect = 3e-07
Identities = 25/135 (18%), Positives = 37/135 (27%), Gaps = 48/135 (35%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
++ N G T L PL+R +V SS A
Sbjct: 107 DRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADE----------------------- 143
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 132
G P S Y+ SK + + EL + +N+
Sbjct: 144 --------------------GGHPGMSVYSASKAALVSFASVLAA----ELLPRGIRVNS 179
Query: 133 VHPGYVATNMSSFMG 147
V PG++ T G
Sbjct: 180 VSPGFIDTPTKGVAG 194
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 45.6 bits (109), Expect = 1e-06
Identities = 27/131 (20%), Positives = 37/131 (28%), Gaps = 50/131 (38%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
+ T N G++ T PLL R + VV S+AG
Sbjct: 128 DDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGS----------------------- 164
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-IN 131
G P S YA SK + R + +L + IN
Sbjct: 165 --------------------TGTPAFSVYAASKAALRSFARNWIL----DLK-DRGIRIN 199
Query: 132 AVHPGYVATNM 142
+ PG T
Sbjct: 200 TLSPGPTETTG 210
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 45.7 bits (109), Expect = 1e-06
Identities = 37/145 (25%), Positives = 47/145 (32%), Gaps = 53/145 (36%)
Query: 14 EKTILTNYLG---LVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSE 70
E I TN+LG L L P L RVV +SS A +I
Sbjct: 109 ESQIGTNHLGHFALTNL---LLPRLT--DRVVTVSSMAHWPGRI---------------- 147
Query: 71 RQLTDMMYEFMDITKEHPRAHVAKGW-PDSAYAVSKIGVNLLTRIYQKKFDCEL-----G 124
D+ + + P AY+ SK+ NLL F EL
Sbjct: 148 --------NLEDLNWRS------RRYSPWLAYSQSKLA-NLL-------FTSELQRRLTA 185
Query: 125 NQDKVI-NAVHPGYVATNMSSFMGN 148
+ A HPGY TN+ G
Sbjct: 186 AGSPLRALAAHPGYSHTNLQGASGR 210
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 45.6 bits (109), Expect = 1e-06
Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 48/130 (36%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
++ + N LR ++R++N+SS+A +
Sbjct: 116 DRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI---------------------- 153
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 132
PD AY+++K +N +T K +LG + +NA
Sbjct: 154 ---------------------SLPDFIAYSMTKGAINTMTFTLAK----QLGARGITVNA 188
Query: 133 VHPGYVATNM 142
+ PG+V T+M
Sbjct: 189 ILPGFVKTDM 198
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 44.1 bits (105), Expect = 4e-06
Identities = 29/130 (22%), Positives = 42/130 (32%), Gaps = 48/130 (36%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
++ I N G T LR R++N+S+S L
Sbjct: 130 DRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL---------------------- 167
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 132
P YA +K GV +T + K EL +D +NA
Sbjct: 168 ---------------------LHPSYGIYAAAKAGVEAMTHVLSK----ELRGRDITVNA 202
Query: 133 VHPGYVATNM 142
V PG AT++
Sbjct: 203 VAPGPTATDL 212
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 44.1 bits (105), Expect = 4e-06
Identities = 20/130 (15%), Positives = 35/130 (26%), Gaps = 47/130 (36%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
++ N G + L R++ + S G
Sbjct: 132 DRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ----------------------- 168
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 132
AK P A Y+ SK + R ++ ++ +N
Sbjct: 169 -------------------AKAVPKHAVYSGSKGAIETFARCMAI----DMADKKITVNV 205
Query: 133 VHPGYVATNM 142
V PG + T+M
Sbjct: 206 VAPGGIKTDM 215
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 44.1 bits (105), Expect = 4e-06
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 47/130 (36%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
++ + N+ L R++ + S ++E
Sbjct: 134 DEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS--------------------NLAEL-- 171
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 132
WP + Y+ SK + LT+ + +LG + +N
Sbjct: 172 --------------------VPWPGISLYSASKAALAGLTKGLAR----DLGPRGITVNI 207
Query: 133 VHPGYVATNM 142
VHPG T+M
Sbjct: 208 VHPGSTDTDM 217
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 43.8 bits (104), Expect = 5e-06
Identities = 14/132 (10%), Positives = 24/132 (18%), Gaps = 50/132 (37%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
+ I N + LL + V +SA
Sbjct: 113 KGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL----------------------- 149
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI-- 130
AY +K + + + E G
Sbjct: 150 --------------------NRTSGMIAYGATKAATHHIIKD----LASENGGLPAGSTS 185
Query: 131 NAVHPGYVATNM 142
+ P + T
Sbjct: 186 LGILPVTLDTPT 197
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 43.7 bits (104), Expect = 5e-06
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 94 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMG 147
PD Y+++K ++ TR +L Q + +N++ PG VAT S MG
Sbjct: 154 HATPDFPYYSIAKAAIDQYTRNTAI----DLI-QHGIRVNSISPGLVATGFGSAMG 204
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 43.7 bits (104), Expect = 6e-06
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMS 143
S Y+ SK +N +T K CE +D + +N+V PG + T +
Sbjct: 169 SLYSASKGAINQMT----KSLACEWA-KDNIRVNSVAPGVILTPLV 209
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 43.4 bits (103), Expect = 6e-06
Identities = 25/130 (19%), Positives = 36/130 (27%), Gaps = 47/130 (36%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
+K N G RR R++ SS A
Sbjct: 124 DKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAA------------------------ 159
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 132
V G P+ + YA SK V R + + G + +N
Sbjct: 160 ------------------VMTGIPNHALYAGSKAAVEGFCRAFAV----DCGAKGVTVNC 197
Query: 133 VHPGYVATNM 142
+ PG V T+M
Sbjct: 198 IAPGGVKTDM 207
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 43.3 bits (103), Expect = 7e-06
Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 47/130 (36%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
++ N G + L R+V SS+
Sbjct: 121 DRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSK----------------------- 157
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 132
P S Y+ SK V+ RI+ K + G++ +NA
Sbjct: 158 -------------------DFSVPKHSLYSGSKGAVDSFVRIFSK----DCGDKKITVNA 194
Query: 133 VHPGYVATNM 142
V PG T+M
Sbjct: 195 VAPGGTVTDM 204
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 43.0 bits (102), Expect = 8e-06
Identities = 10/135 (7%), Positives = 25/135 (18%), Gaps = 49/135 (36%)
Query: 12 QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSER 71
+ TI + G + + L +
Sbjct: 81 KNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMME--------------------- 119
Query: 72 QLTDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI 130
++ A++ V + E+ ++
Sbjct: 120 ----------------------DPIVQGASAAMANGAVTAFAKSAAI----EMPRGIRI- 152
Query: 131 NAVHPGYVATNMSSF 145
N V P + +
Sbjct: 153 NTVSPNVLEESWDKL 167
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 42.9 bits (102), Expect = 9e-06
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 142
+ Y+ SK V+ LTR Q I N++HP + T M
Sbjct: 144 PIEQYAGYSASKAAVSALTRAAA----LSCRKQGYAIRVNSIHPDGIYTPM 190
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 42.9 bits (102), Expect = 1e-05
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 142
G P AY SK V ++++ + +D + N VHPGY+ T +
Sbjct: 148 GDPSLGAYNASKGAVRIMSKSAAL----DCALKDYDVRVNTVHPGYIKTPL 194
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 42.5 bits (101), Expect = 1e-05
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMS 143
+ Y +K ++ LT + E +D + +N V PG +AT++
Sbjct: 157 AVYGATKGAMDQLT----RCLAFEWA-KDNIRVNGVGPGVIATSLV 197
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 42.6 bits (101), Expect = 1e-05
Identities = 25/132 (18%), Positives = 39/132 (29%), Gaps = 53/132 (40%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLR-RHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQ 72
+K N+ +V P L+ + VV +SS A ++
Sbjct: 104 KKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNMYF------------------- 144
Query: 73 LTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI-- 130
W AY SK +N L N+++ +
Sbjct: 145 ---------------------SSW--GAYGSSKAALNHFAMT--------LANEERQVKA 173
Query: 131 NAVHPGYVATNM 142
AV PG V T+M
Sbjct: 174 IAVAPGIVDTDM 185
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 42.1 bits (100), Expect = 1e-05
Identities = 20/130 (15%), Positives = 34/130 (26%), Gaps = 48/130 (36%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
+K + N + L L+ A +V S
Sbjct: 95 KKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCF----------------------- 131
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 132
P+ AY +SK + +T+ +L +N
Sbjct: 132 --------------------IAKPNSFAYTLSKGAIAQMTKSLAL----DLAKYQIRVNT 167
Query: 133 VHPGYVATNM 142
V PG V T++
Sbjct: 168 VCPGTVDTDL 177
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 41.8 bits (99), Expect = 2e-05
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y SK G+ TR L N +NA+ PG+V T +
Sbjct: 151 PVYCASKHGIVGFTR--SAALAANLMNSGVRLNAICPGFVNTAI 192
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 41.8 bits (99), Expect = 2e-05
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 49/131 (37%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLR-RHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQ 72
+ + +N + + L+ R + N+ SSA
Sbjct: 102 RRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQ---------------------- 139
Query: 73 LTDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVIN 131
G + S Y SK G+ + EL + +
Sbjct: 140 ---------------------VGKANESLYCASKWGMRGFLESLRA----ELKDSPLRLV 174
Query: 132 AVHPGYVATNM 142
++P + +
Sbjct: 175 NLYPSGIRSEF 185
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 41.8 bits (99), Expect = 3e-05
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 94 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 142
K +P Y +K GV L R + ELG Q + +N+VHP +V T M
Sbjct: 170 KAYPHTGHYVAAKHGVVGLMRAFGV----ELG-QHMIRVNSVHPTHVKTPM 215
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 41.5 bits (98), Expect = 3e-05
Identities = 13/132 (9%), Positives = 25/132 (18%), Gaps = 50/132 (37%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
+ + + L+ + + A
Sbjct: 102 DLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL----------------------- 138
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI-- 130
G P Y ++K V+ L + +
Sbjct: 139 --------------------DGTPGMIGYGMAKGAVHQLCQS----LAGKNSGMPSGAAA 174
Query: 131 NAVHPGYVATNM 142
AV P + T M
Sbjct: 175 IAVLPVTLDTPM 186
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 41.5 bits (98), Expect = 3e-05
Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 35/129 (27%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
+++G++ T P L A ++ S AG L
Sbjct: 122 ADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAG-----------------------L 158
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAV 133
+ P + Y+ +K V+ T +L Q N +
Sbjct: 159 IAAAQPPGAGGPQGPGG--------AGYSYAKQLVDSYTLQLAA----QLAPQSIRANVI 206
Query: 134 HPGYVATNM 142
HP V T+M
Sbjct: 207 HPTNVNTDM 215
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 41.4 bits (98), Expect = 3e-05
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 142
+ SAY SK V LT+ + + NAV P + T +
Sbjct: 139 ITKNASAYVTSKHAVIGLTKSIAL----DYA--PLLRCNAVCPATIDTPL 182
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 41.4 bits (98), Expect = 3e-05
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 142
AY +SK G+ L+RI EL + N + P +V T M
Sbjct: 168 AVGGTGAYGMSKAGIIQLSRITAA----ELR-SSGIRSNTLLPAFVDTPM 212
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 41.3 bits (98), Expect = 4e-05
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
G + Y V+K G+ LTR G+Q AV PG V TN+
Sbjct: 150 GGFAGAPYTVAKHGLIGLTRSIAA----HYGDQGIRAVAVLPGTVKTNI 194
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 41.1 bits (97), Expect = 4e-05
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 55/136 (40%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQ 72
K++ N+L V V P+L++ + +V +SS AG ++
Sbjct: 131 RKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVA-------------------- 170
Query: 73 LTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDC---ELGNQDKV 129
+P +AY+ SK ++ F E
Sbjct: 171 --------------YPMV--------AAYSASKFALDGF-------FSSIRKEYSVSRVN 201
Query: 130 I--NAVHPGYVATNMS 143
+ G + T +
Sbjct: 202 VSITLCVLGLIDTETA 217
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 41.4 bits (98), Expect = 4e-05
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 94 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
K P Y SK V L R + ELG +N+VHPG V T M
Sbjct: 166 KMQPFMIHYTASKHAVTGLARAFAA----ELGKHSIRVNSVHPGPVNTPM 211
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 41.0 bits (97), Expect = 4e-05
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFM 146
G Y +K V LT+ ELG + +N++HPG V T M+ ++
Sbjct: 146 GTVACHGYTATKFAVRGLTKSTAL----ELG-PSGIRVNSIHPGLVKTPMTDWV 194
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 41.0 bits (97), Expect = 4e-05
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 90 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 142
+ A Y +K V LT ELG + + +N V P VA+ +
Sbjct: 156 SFTAGEGVSHVYTATKHAVLGLTTSLC----TELG-EYGIRVNCVSPYIVASPL 204
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 41.0 bits (97), Expect = 4e-05
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+ +AYA +K + LTR + G NA+ PG V T
Sbjct: 152 AYDMSTAYACTKAAIETLTRYVAT----QYGRHGVRCNAIAPGLVRTPR 196
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 41.0 bits (97), Expect = 5e-05
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
G P+ +AY SK + LT +L + +NA+ PGY+
Sbjct: 150 GPPNMAAYGTSKGAIIALTETAAL----DLAPYNIRVNAISPGYMGPGF 194
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 40.9 bits (97), Expect = 5e-05
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
G S+Y SK GV L+++ ELG +N+VHPG T M
Sbjct: 144 GLALTSSYGASKWGVRGLSKLAAV----ELGTDRIRVNSVHPGMTYTPM 188
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 40.5 bits (96), Expect = 5e-05
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+P SAY SK V LT+ + NAV PG + T M
Sbjct: 148 AFPGRSAYTTSKGAVLQLTKSVAV----DYAGSGIRCNAVCPGMIETPM 192
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 40.6 bits (96), Expect = 5e-05
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 90 AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
G+ + YA SK G+ L + ELG + +NA+ PG T
Sbjct: 147 VGHTAGFAGVAPYAASKAGLIGLVQALAV----ELGARGIRVNALLPGGTDTPA 196
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 40.6 bits (96), Expect = 5e-05
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 95 GWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
WP YA SK G+ L+T E + +N + PG + T +
Sbjct: 151 PWPLFVHYAASKGGMKLMTETLAL----EYAPKGIRVNNIGPGAINTPI 195
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 40.6 bits (96), Expect = 5e-05
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 90 AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
P +AY +K + + ELG +NAV PG + TN+
Sbjct: 168 GTRTFTTPGATAYTATKAAQVAIVQQLAL----ELGKHHIRVNAVCPGAIETNI 217
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 40.5 bits (96), Expect = 5e-05
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 94 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+ +AY SK G+ LTR +L +NAV PG +AT
Sbjct: 141 FAEQENAAYNASKGGLVNLTRSLAL----DLAPLRIRVNAVAPGAIATEA 186
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 40.8 bits (96), Expect = 6e-05
Identities = 17/132 (12%), Positives = 29/132 (21%), Gaps = 49/132 (37%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRH---ARVVNLSSSAGHLSQITNLELKKRLMEDCVSE 70
I + G + P L + +S AG +
Sbjct: 133 RWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGL-------------- 178
Query: 71 RQLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI 130
Y V+K GV L + E+ +
Sbjct: 179 ----------------------------GTYGVAKYGVVGLAETLAR----EVKPNGIGV 206
Query: 131 NAVHPGYVATNM 142
+ + P V T +
Sbjct: 207 SVLCPMVVETKL 218
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 40.6 bits (96), Expect = 6e-05
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
AY V+K V+ L + ELG +N++ PG + T++ + +
Sbjct: 162 GAYGVTKSAVDHLM----QLAADELGASWVRVNSIRPGLIRTDLVAAI 205
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 40.6 bits (96), Expect = 6e-05
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 142
G Y +K V +T+ + V +N + PG + T +
Sbjct: 147 GQAQAVPYVATKGAVTAMTKALAL----DES-PYGVRVNCISPGNIWTPL 191
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 40.6 bits (96), Expect = 6e-05
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 143
S Y+ +K +N L + CE + NAV P +AT ++
Sbjct: 162 SIYSATKGALNQLA----RNLACEWASDGIRANAVAPAVIATPLA 202
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 40.6 bits (96), Expect = 6e-05
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 94 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMG 147
+ PD YA++K ++ TR +L + + +N+V PG V T ++ MG
Sbjct: 154 QAQPDFLYYAIAKAALDQYTRSTAI----DLA-KFGIRVNSVSPGMVETGFTNAMG 204
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 40.2 bits (95), Expect = 7e-05
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 91 HVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN 148
+ + VSK + LTR EL + ++NAV G + T+ N
Sbjct: 143 GSIRYLENYTTVGVSKAALEALTRYLAV----ELSPKQIIVNAVSGGAIDTDALKHFPN 197
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 40.3 bits (95), Expect = 7e-05
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 94 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+G + Y SK G++ L R ELG ++ +N V P VAT M
Sbjct: 183 RGAENIGNYIASKHGLHGLMRTMAL----ELGPRNIRVNIVCPSSVATPM 228
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 40.2 bits (95), Expect = 8e-05
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
G + S YA +K GV LTR E G INA+ PG + T M
Sbjct: 158 GIGNQSGYAAAKHGVVGLTRNSAV----EYGRYGIRINAIAPGAIWTPM 202
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 40.3 bits (95), Expect = 8e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y +K GV L R+Y L Q +N++HP V T M
Sbjct: 173 VGYVAAKHGVVGLMRVYAN----LLAGQMIRVNSIHPSGVETPM 212
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 40.2 bits (95), Expect = 9e-05
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 90 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+ A S Y +K +++LT++ ELG +NAV+P V T+M
Sbjct: 139 SQRA-VTNHSVYCSTKGALDMLTKV----MALELGPHKIRVNAVNPTVVMTSM 186
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 39.8 bits (94), Expect = 9e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y+ SK G+ LT ELG +N++HP V T M
Sbjct: 176 GHYSASKHGLTALTNTLAI----ELGEYGIRVNSIHPYSVETPM 215
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 39.8 bits (94), Expect = 1e-04
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y+ +K + +LT+ ELG +N+V+P V T+M
Sbjct: 147 ITYSSTKGAMTMLTKA----MAMELGPHKIRVNSVNPTVVLTDM 186
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 39.9 bits (94), Expect = 1e-04
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 95 GWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 147
P SA Y +K + LT+ + D + G T M+ M
Sbjct: 170 PRPYSAPYTATKHAITGLTKSTSL----DGRVHDIACGQIDIGNADTPMAQKMK 219
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 39.8 bits (94), Expect = 1e-04
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 142
+ +AY SK + LTR + K+ NAV PG + T M
Sbjct: 146 ATKNAAAYVTSKHALLGLTRSVAI----DYA--PKIRCNAVCPGTIMTPM 189
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 39.8 bits (94), Expect = 1e-04
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 92 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
V + S+Y SK V+ LTR E + +NA+ PGYVAT M
Sbjct: 150 VNRPQFASSYMASKGAVHQLTRA----LAAEWAGRGVRVNALAPGYVATEM 196
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 39.9 bits (94), Expect = 1e-04
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 95 GWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 147
P+SA Y +K + LT+ + D + G AT+M++ M
Sbjct: 179 PRPNSAPYTATKHAITGLTKSTAL----DGRMHDIACGQIDIGNAATDMTARMS 228
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 39.8 bits (94), Expect = 1e-04
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
+AY SK GV+ + E NAV P Y+ T ++ F
Sbjct: 163 AAYNASKAGVHQYI----RSLAAEWAPHGIRANAVAPTYIETTLTRFG 206
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 39.8 bits (94), Expect = 1e-04
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 95 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+ Y +K G+ +LT E + NA+ PGY+ T+M
Sbjct: 153 RPTVAPYTAAKGGIKMLTCS----MAAEWAQFNIQTNAIGPGYILTDM 196
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 39.4 bits (93), Expect = 1e-04
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 91 HVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+A S YA +K V TR K EL Q +NA+ PG + T+
Sbjct: 150 LLAAYTGFYSTYAGNKAPVEHYTRAASK----ELMKQQISVNAIAPGPMDTSF 198
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 39.5 bits (93), Expect = 2e-04
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 94 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 147
+ YA +K ++ TR +L +N+V PG VAT MG
Sbjct: 172 QAHSGYPYYACAKAALDQYTRCTAI----DLIQHGVRVNSVSPGAVATGFMGAMG 222
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 39.5 bits (93), Expect = 2e-04
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 95 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
G +AYA SK V LT + E + +NA+ PGYV T
Sbjct: 172 GRNVAAYAASKHAVVGLT----RALASEWAGRGVGVNALAPGYVVTAN 215
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 39.1 bits (92), Expect = 2e-04
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 90 AHVAKGWP--DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
G YA SK ++ T + E+ + +NAV PG + T++
Sbjct: 168 MAAILGSATQYVDYAASKAAIDTFTIGLAR----EVAAEGIRVNAVRPGIIETDL 218
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 39.1 bits (92), Expect = 2e-04
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 94 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
D +AY SK ++ LTR + + +NAV PG + +
Sbjct: 165 SAIADRTAYVASKGAISSLTRAMAM----DHAKEGIRVNAVAPGTIDSPY 210
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 39.2 bits (92), Expect = 2e-04
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
S YA SK GV L E+G + +N+V+PG V T M
Sbjct: 206 SHYAASKHGVQGLMLSLAN----EVGRHNIRVNSVNPGAVNTEM 245
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 39.1 bits (92), Expect = 2e-04
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 95 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
G AY SK ++ L+R+ EL + +N + PG + M+ +
Sbjct: 176 GEQAYAYGPSKAALHQLSRM----LAKELVGEHINVNVIAPGRFPSRMTRHI 223
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 100 AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
AY +K + LT + E +N + PGYV T
Sbjct: 143 AYTTAKTALLGLT----RALAKEWARLGIRVNLLCPGYVETEF 181
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 39.1 bits (92), Expect = 2e-04
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
PD AY SK G+ + T K ELG N+V P V T M
Sbjct: 164 PLPDHYAYCTSKAGLVMAT----KVLARELGPHGIRANSVCPTVVLTEM 208
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 38.8 bits (91), Expect = 2e-04
Identities = 12/132 (9%), Positives = 24/132 (18%), Gaps = 50/132 (37%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQL 73
+ I + L+ + ++A
Sbjct: 98 DLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM----------------------- 134
Query: 74 TDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI-- 130
P Y ++K V+ LT +
Sbjct: 135 --------------------GPTPSMIGYGMAKAAVHHLTSS----LAAKDSGLPDNSAV 170
Query: 131 NAVHPGYVATNM 142
+ P + T M
Sbjct: 171 LTIMPVTLDTPM 182
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 38.9 bits (91), Expect = 2e-04
Identities = 16/139 (11%), Positives = 28/139 (20%), Gaps = 52/139 (37%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRR----HARVVNLSSSAGHLSQITNLELKKRLMEDCVS 69
N ++ + VVN+SS
Sbjct: 120 NNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL------------------- 160
Query: 70 ERQLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV 129
KGW Y K ++L ++ E
Sbjct: 161 ---------------------QPYKGW--GLYCAGKAARDMLYQVLAA----E--EPSVR 191
Query: 130 INAVHPGYVATNMSSFMGN 148
+ + PG + +M
Sbjct: 192 VLSYAPGPLDNDMQQLARE 210
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 38.6 bits (91), Expect = 3e-04
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
Y VSK + LT+ EL ++ +N + PG + TN S +
Sbjct: 162 GPYNVSKTALLGLTKNLAV----ELAPRNIRVNCLAPGLIKTNFSQVL 205
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 38.7 bits (91), Expect = 3e-04
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
SAYA +K G+ +LT K E G + N + PGY+AT
Sbjct: 181 SAYAAAKGGLKMLT----KNIASEYGEANIQCNGIGPGYIATPQ 220
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 38.7 bits (91), Expect = 3e-04
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 92 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
+ S Y SK V LT K EL +N+V PGY+ T + +
Sbjct: 175 INIPQQVSHYCTSKAAVVHLT----KAMAVELAPHQIRVNSVSPGYIRTELVEPL 225
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 38.7 bits (91), Expect = 3e-04
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM-SSFMG 147
P+ + Y +K V +T+ EL K+ + A++P T + ++FMG
Sbjct: 153 PRPNLAWYNATKGWVVSVTKALAI----ELA-PAKIRVVALNPVAGETPLLTTFMG 203
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 38.2 bits (90), Expect = 4e-04
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
++YA SK + L R +LG ++ +N + PG + T+
Sbjct: 157 TSYASSKAAASHLVRNMAF----DLGEKNIRVNGIAPGAILTDA 196
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 38.0 bits (89), Expect = 4e-04
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 91 HVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
P Y ++K + LTR EL + +NAV PG
Sbjct: 171 MTDLPLPGFCVYTMAKHALGGLTRAAAL----ELAPRHIRVNAVAPGLSLLPP 219
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 37.9 bits (89), Expect = 5e-04
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 6/53 (11%)
Query: 91 HVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
KG Y +K G+ LT + KV N + P +
Sbjct: 159 VTRKGSSKHIAYCATKAGLESLTLSFAA----RFAPLVKV-NGIAPALLMFQP 206
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 37.9 bits (89), Expect = 6e-04
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
SAYA SK GV LT K E G +N + PG+ T M
Sbjct: 170 SAYAASKGGVASLT----KALAKEWGRYGIRVNVIAPGWYRTKM 209
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 37.9 bits (89), Expect = 6e-04
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 94 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
KG + Y+ +K V LT+ + Q N V PG V T
Sbjct: 139 KGVVNRCVYSTTKAAVIGLTKSVAA----DFIQQGIRCNCVCPGTVDTPS 184
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 37.5 bits (88), Expect = 6e-04
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 95 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
P + Y ++K + LT+ + Q INAV P V T M
Sbjct: 159 PGPGHALYCLTKAALASLTQCMGM----DHAPQGIRINAVCPNEVNTPM 203
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 37.6 bits (88), Expect = 7e-04
Identities = 27/138 (19%), Positives = 35/138 (25%), Gaps = 59/138 (42%)
Query: 14 EKTILTNYLGLVRTC-VFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSE 70
EKT N L T FL P + H +V ++S+AGH+S
Sbjct: 133 EKTFEVNVLAHFWTTKAFL-PAMTKNNHGHIVTVASAAGHVSV----------------- 174
Query: 71 RQLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDC---EL--GN 125
P AY SK EL
Sbjct: 175 -----------------PFL--------LAYCSSKFAAVGFH-------KTLTDELAALQ 202
Query: 126 QDKV-INAVHPGYVATNM 142
V + P +V T
Sbjct: 203 ITGVKTTCLCPNFVNTGF 220
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 37.5 bits (88), Expect = 7e-04
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 95 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 144
G P + +++K G+N +TR E +NAV PG + T M
Sbjct: 164 GMPSALASLTKGGLNAVTRSLAM----EFSRSGVRVNAVSPGVIKTPMHP 209
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 37.2 bits (87), Expect = 0.001
Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 50/139 (35%)
Query: 14 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSER 71
K + N + + ++ +++ + N++S A
Sbjct: 111 RKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAK--------------------- 149
Query: 72 QLTDMMYEFMDITKEHPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVI 130
G+ D Y +K + L + EL +
Sbjct: 150 ----------------------YGFADGGIYGSTKFALLGLAESLYR----ELAPLGIRV 183
Query: 131 NAVHPGYVATNMSSFMGNV 149
+ PG+V T+M+ G
Sbjct: 184 TTLCPGWVNTDMAKKAGTP 202
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 37.1 bits (87), Expect = 0.001
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
AY ++K + +++ ELG + +N+V PGY+
Sbjct: 158 GAYKMAKSALLAMSQTLAT----ELGEKGIRVNSVLPGYIWGGT 197
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 36.8 bits (86), Expect = 0.001
Identities = 23/134 (17%), Positives = 33/134 (24%), Gaps = 55/134 (41%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLR-RHARVVNLSSSAGHLSQITNLELKKRLMEDCVSERQ 72
+ N + L P LR V+ ++S AG+
Sbjct: 100 HAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGN---------------------- 137
Query: 73 LTDMMYEFMDITKEHPRAHVAKGWPDSA-YAVSKIGVNLLT---RIYQKKFDCELGNQDK 128
P + YA SK + L R E N
Sbjct: 138 ---------------------GPHPGNTIYAASKHALRGLADAFRK-------EEANNGI 169
Query: 129 VINAVHPGYVATNM 142
++ V PG T M
Sbjct: 170 RVSTVSPGPTNTPM 183
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 37.1 bits (87), Expect = 0.001
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y ++ L K L ++ A+ P +
Sbjct: 145 PLYGPARAATVALVESAAK----TLSRDGILLYAIGPNFFNNPT 184
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
++Y SK VN LTR ++G +NA+ PG + T+
Sbjct: 158 ASYGSSKAAVNHLTRNIAF----DVGPMGIRVNAIAPGAIKTDA 197
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+ Y +K V LT+ +L +NA+ PG V
Sbjct: 153 AIYCATKAAVISLTQSAGL----DLIKHRINVNAIAPGVVDGEH 192
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 36.3 bits (85), Expect = 0.002
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 95 GWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 142
P A +K GV +T+ E G + + +NA+ PG +
Sbjct: 149 AGPGVIHSAAAKAGVLAMTKTLAV----EWGRKYGIRVNAIAPGPIERTG 194
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 36.4 bits (85), Expect = 0.002
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 142
Y +K V L R EL V +N V PG + T++
Sbjct: 153 PLYTATKHAVVGLVRQMAF----ELA--PHVRVNGVAPGGMNTDL 191
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 36.3 bits (85), Expect = 0.002
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
++Y SK GV LT+ +L +NAV PG + T M
Sbjct: 169 ASYVSSKWGVIGLTKCAAH----DLVGYGITVNAVAPGNIETPM 208
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 36.0 bits (84), Expect = 0.002
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
S YA +K GV LTR E INAV P
Sbjct: 172 SHYAAAKAGVMALTRCSAI----EAVEFGVRINAVSPSIARHKF 211
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 92 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
V + Y +K L K E +V N + PGY+ T+++ F
Sbjct: 178 VNIPQLQAPYNTAKAACTHLA----KSLAIEWAPFARV-NTISPGYIDTDITDFA 227
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 36.1 bits (84), Expect = 0.002
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
SAY +K G+ LT+ E+ +N++ PGYV T +
Sbjct: 174 SAYVAAKHGIMGLTKTVAL----EVAESGVTVNSICPGYVLTPL 213
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
S Y ++ G L K ELG + + A+ P Y+ +
Sbjct: 143 STYTSARAGACTLANALSK----ELGEYNIPVFAIGPNYLHSED 182
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 35.6 bits (83), Expect = 0.003
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+ Y ++K+G+N LT+ + ELG ++ INA+ PG + T
Sbjct: 156 NYYGLAKVGINGLTQQLSR----ELGGRNIRINAIAPGPIDTEA 195
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 35.6 bits (83), Expect = 0.003
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
Y SK + L + E + +NA+ PGYV T+ ++ M
Sbjct: 170 VFYNSSKAACSNLVKGLAA----EWASAGIRVNALSPGYVNTDQTAHM 213
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y +SK G+ ++ L + V PG + ++M
Sbjct: 184 YCMSKAGLAAFSQGLAL----RLAETGIAVFEVRPGIIRSDM 221
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 35.2 bits (82), Expect = 0.003
Identities = 16/133 (12%), Positives = 31/133 (23%), Gaps = 52/133 (39%)
Query: 12 QAEKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLMEDCVS 69
E+ + + L + ++ AR V + ++
Sbjct: 89 LVEEMLAAHLLTAAF----VLKHARFQKGARAVFFGAYPRYVQV---------------- 128
Query: 70 ERQLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV 129
P +AYA +K + EL +
Sbjct: 129 ------------------PGF--------AAYAAAKGALEAYLEA----ARKELLREGVH 158
Query: 130 INAVHPGYVATNM 142
+ V VAT +
Sbjct: 159 LVLVRLPAVATGL 171
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 35.1 bits (81), Expect = 0.005
Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 56/132 (42%)
Query: 20 NYLGLVRTCVFLFPLLRRHAR--------VVNLSSSAGHLSQITNLELKKRLMEDCVSER 71
N G+V P + + VVN +S A L+ +
Sbjct: 118 NLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSP--------------- 162
Query: 72 QLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTR-IYQKKFDCELGNQDKVI 130
Y +K V L+ ++ L + +
Sbjct: 163 ---------------------------GIYNTTKFAVRGLSESLHY-----SLLKYEIGV 190
Query: 131 NAVHPGYVATNM 142
+ + PG V + +
Sbjct: 191 SVLCPGLVKSYI 202
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 34.8 bits (81), Expect = 0.005
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
SAY+ +K V LT+ + EL + +NA PG V T M
Sbjct: 152 SAYSTTKFAVRGLTQAAAQ----ELAPKGHTVNAYAPGIVGTGM 191
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.006
Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 56/185 (30%)
Query: 3 RASTVPFAIQAEKTILTNY----LGLVRTCVFLFPLLRRHARVVNLSSSAGH-------- 50
+++ F + T + L L+ F L+ + ++ AGH
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLME--KAAFEDLKSKGLIPADATFAGHSLGEYAAL 1770
Query: 51 --LSQITNLE-----LKKR--LMEDCVSERQLTDMMYEFMDITKEHPRAHVAKGWPDSA- 100
L+ + ++E + R M+ V +L Y + I +P VA + A
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI---NPGR-VAASFSQEAL 1826
Query: 101 -YAVSKIG---------VNLLTRIYQKKFDCELGNQDKVI----NAVHPGYVATNMSSFM 146
Y V ++G VN ++ E Q V A+ TN+ +F+
Sbjct: 1827 QYVVERVGKRTGWLVEIVN---------YNVE-NQQ-YVAAGDLRALD---TVTNVLNFI 1872
Query: 147 GNVNI 151
I
Sbjct: 1873 KLQKI 1877
Score = 31.2 bits (70), Expect = 0.15
Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 51/144 (35%)
Query: 9 FAIQAEK--TILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH------LSQITNLELK 60
F + K T+L ++G+ R C +P ++ S LS I+NL +
Sbjct: 292 FFVSVRKAITVLF-FIGV-R-CYEAYPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQE 347
Query: 61 KRLMEDCVSERQLTDMMYEFMDITKEH--------------PRAHVAKGWPDSAYAVSKI 106
Q+ ++++ T H + V G P S Y
Sbjct: 348 -----------QVQ----DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY----- 387
Query: 107 GVNLLTRIYQKKFDCELG-NQDKV 129
G+NL R K G +Q ++
Sbjct: 388 GLNLTLR----KAKAPSGLDQSRI 407
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 34.9 bits (81), Expect = 0.006
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
SAY +K GV T++ E Q NA+ PG+V T +
Sbjct: 153 SAYVAAKHGVVGFTKVTAL----ETAGQGITANAICPGWVRTPL 192
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 34.5 bits (80), Expect = 0.007
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 88 PRAHVAKGWP-DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPG-YVATNMSSF 145
P + W + Y ++K+G++L+T E G Q INA+ P +AT+ +
Sbjct: 150 PPSLNPAWWGAHTGYTLAKMGMSLVTLGLAA----EFGPQGVAINALWPRTVIATDAINM 205
Query: 146 MGNV 149
+ V
Sbjct: 206 LPGV 209
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 34.7 bits (80), Expect = 0.007
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 19 TNYLGLVRTCVFLFPLLR--RHARVVNLSSSAGHLS 52
N +G VR P ++ RV+ S G +
Sbjct: 113 VNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMG 148
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 34.6 bits (80), Expect = 0.007
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 95 GWP-DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
W + Y ++K G+ L + EL + N + P
Sbjct: 159 KWLRPTPYMMAKYGMTLCALGIAE----ELRDAGIASNTLWPRTTVATA 203
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 34.5 bits (80), Expect = 0.007
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 92 VAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+ + + Y V K + L EL ++ PG V T +
Sbjct: 151 GSLQYMFNVPYGVGKAACDKLAADCAH----ELRRHGVSCVSLWPGIVQTEL 198
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 34.1 bits (79), Expect = 0.009
Identities = 17/131 (12%), Positives = 33/131 (25%), Gaps = 48/131 (36%)
Query: 14 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSER 71
+ + + ++ P L R A +V ++S
Sbjct: 112 SEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLAS--------------------- 150
Query: 72 QLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVIN 131
P H+ A + ++ GV L R E + +N
Sbjct: 151 ---------------QPEPHMV------ATSAARAGVKNLVRSMAF----EFAPKGVRVN 185
Query: 132 AVHPGYVATNM 142
+ G V +
Sbjct: 186 GILIGLVESGQ 196
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 34.1 bits (79), Expect = 0.009
Identities = 23/134 (17%), Positives = 35/134 (26%), Gaps = 50/134 (37%)
Query: 14 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSER 71
+ T+ TN G LF L+ + + ++S A
Sbjct: 111 DYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAAT--------------------- 149
Query: 72 QLTDMMYEFMDITKEHPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVI 130
K + S+ Y +SK G L + + I
Sbjct: 150 ----------------------KAFRHSSIYCMSKFGQRGLVETMRL----YARKCNVRI 183
Query: 131 NAVHPGYVATNMSS 144
V PG V T M
Sbjct: 184 TDVQPGAVYTPMWG 197
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 34.1 bits (79), Expect = 0.009
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
++Y V+K G + R E + +V N++ PGY+ T +S F+
Sbjct: 173 TSYNVAKAGCIHMARSLAN----EWRDFARV-NSISPGYIDTGLSDFV 215
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 34.0 bits (79), Expect = 0.010
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
AYA SK V TR K E+G + +V NAV PG ++T
Sbjct: 156 LAYATSKGAVMTFTRGLAK----EVGPKIRV-NAVCPGMISTTF 194
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 34.1 bits (79), Expect = 0.010
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+AY +K GV LT++ E + NA+ PG+V T +
Sbjct: 149 AAYVAAKHGVVGLTKVVGL----ETATSNVTCNAICPGWVLTPL 188
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 34.0 bits (79), Expect = 0.011
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+ YA K+GV L R EL + +N + PG + T M
Sbjct: 147 AHYAAGKLGVVGLARTLAL----ELARKGVRVNVLLPGLIQTPM 186
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 34.1 bits (79), Expect = 0.011
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y +K ++ + + + N V PG V T
Sbjct: 162 GLYGAAKAFLHNVHKNWVD----FHTKDGVRFNIVSPGTVDTAF 201
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 33.8 bits (78), Expect = 0.013
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 91 HVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 143
V + S Y + K + LT+ EL +N V PG ++
Sbjct: 183 MVDQPCMAFSLYNMGKHALVGLTQSAAL----ELAPYGIRVNGVAPGVSLLPVA 232
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 33.9 bits (78), Expect = 0.014
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 91 HVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 140
+ Y ++K + LTR EL +N V PG
Sbjct: 186 MTNQPLLGYTIYTMAKGALEGLTRSAAL----ELAPLQIRVNGVGPGLSVL 232
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 34.0 bits (78), Expect = 0.014
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 91 HVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 140
+ Y ++K + LTR EL +N V PG
Sbjct: 223 MTNQPLLGYTIYTMAKGALEGLTRSAAL----ELAPLQIRVNGVGPGLSVL 269
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 33.7 bits (78), Expect = 0.015
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 94 KGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
D A Y SK G+N L + EL ++ V PG V T
Sbjct: 171 NPVADGAAYTASKWGLNGLMTSAAE----ELRQHQVRVSLVAPGSVRTEF 216
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 33.0 bits (76), Expect = 0.023
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
A +K GV ++ K E G N + PG + T
Sbjct: 175 VPSASAKAGVEAMS----KSLAAEWGKYGMRFNVIQPGPIKTKG 214
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 32.9 bits (76), Expect = 0.027
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+ Y+ SK V LT+ + +L +N PG V T M
Sbjct: 150 AVYSSSKFAVRGLTQTAAR----DLAPLGITVNGYCPGIVKTPM 189
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 32.6 bits (75), Expect = 0.028
Identities = 13/133 (9%), Positives = 31/133 (23%), Gaps = 51/133 (38%)
Query: 14 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSER 71
K + L+ ++ ++A
Sbjct: 108 RKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASL--------------------- 146
Query: 72 QLTDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQD-KV 129
+G +A+A +K G+ + + + EL ++ V
Sbjct: 147 ----------------------RGGSGFAAFASAKFGLRAVAQSMAR----ELMPKNIHV 180
Query: 130 INAVHPGYVATNM 142
+ + V T
Sbjct: 181 AHLIIDSGVDTAW 193
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 32.5 bits (75), Expect = 0.032
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+ Y +K TR +LG +NA+ P V T
Sbjct: 152 THYISTKAANIGFTRALAS----DLGKDGITVNAIAPSLVRTAT 191
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 32.6 bits (75), Expect = 0.035
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 93 AKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
G+P + ++ GV LT+ E IN V PG + +
Sbjct: 162 KAGFPLAVHSGAARAGVYNLTKSLAL----EWACSGIRINCVAPGVIYSQT 208
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 32.1 bits (74), Expect = 0.039
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHAR--VVNLSSSAGH 50
+ I N LG+ RT L+R +V S +
Sbjct: 105 HEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR 143
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 32.4 bits (74), Expect = 0.045
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 12 QAEKTILTNYLGLVRTCVFLFPLLR--RHARVVNLSSSAG 49
Q + N L R P +R +H ++ +SSS+
Sbjct: 110 QFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSS 149
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 32.1 bits (74), Expect = 0.047
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHAR--VVNLSSSAGH 50
+ TN G P L R +VN+ S AG
Sbjct: 103 RLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGK 141
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 32.1 bits (74), Expect = 0.049
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 14 EKTILTNYLGLVRTCVFLFP-LLRRHARVVNLSSSAGH 50
+ I TN LGL+ P LLR VV +SS AG
Sbjct: 109 TRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGR 146
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 31.7 bits (73), Expect = 0.054
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
SAY SK + L EL N V PG T+M +
Sbjct: 144 SAYGASKAALKSLALSVGL----ELAGSGVRCNVVSPGSTDTDMQRTL 187
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 31.8 bits (73), Expect = 0.057
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+ Y+ SK V T+ + E+ ++ +N V PG+V T M
Sbjct: 157 AHYSASKFAVFGWTQALAR----EMAPKNIRVNCVCPGFVKTAM 196
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 31.7 bits (73), Expect = 0.061
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHAR--VVNLSSSAGH 50
E I TN GLV + P + ++N+ S+AG
Sbjct: 100 ETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS 138
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 31.8 bits (73), Expect = 0.064
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y +K R EL +NA+ PG + T
Sbjct: 161 YGATKAAQLGFMRTAAI----ELAPHKITVNAIMPGNIMTEG 198
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 31.5 bits (72), Expect = 0.076
Identities = 20/135 (14%), Positives = 30/135 (22%), Gaps = 53/135 (39%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLR-----RHARVVNLSSSAGHLSQITNLELKKRLMEDCV 68
E+TI N+ GLV T + + N+ S G
Sbjct: 101 ERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF------------------ 142
Query: 69 SERQLTDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQD 127
Y+ SK V T K
Sbjct: 143 -------------------------NAIHQVPVYSASKAAVVSFTNSLAK----LAPITG 173
Query: 128 KVINAVHPGYVATNM 142
+++PG T +
Sbjct: 174 VTAYSINPGITRTPL 188
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 31.4 bits (72), Expect = 0.082
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 50/132 (37%)
Query: 14 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSER 71
+ + VR L P + R +++ +S + +
Sbjct: 110 QFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICA-VQPLWYE-------------- 154
Query: 72 QLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-I 130
Y V+K + + ++ E+ +D + +
Sbjct: 155 ---------------------------PIYNVTKAALMMFSKTLAT----EVI-KDNIRV 182
Query: 131 NAVHPGYVATNM 142
N ++PG + T
Sbjct: 183 NCINPGLILTPD 194
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 31.4 bits (72), Expect = 0.084
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 14 EKTILTNYLGLVRTCVFLFP-LLRRHARVVNLSSSAGH 50
+ I N + L + VV + S+A
Sbjct: 97 QTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ 134
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 31.1 bits (71), Expect = 0.096
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 14 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGH 50
+ TN L+ + P+ + +VNL S AG
Sbjct: 141 QDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGR 179
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 31.1 bits (71), Expect = 0.11
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
+AYA +K GV LT + +L + +N + PG + T + +
Sbjct: 185 TAYAAAKAGVIGLTIAAAR----DLSSAGIRVNTIAPGTMKTPIMESV 228
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 30.7 bits (70), Expect = 0.13
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+K V+ +TR E G Q+ +N++ PG ++
Sbjct: 175 VHAGSAKAAVDAMTRHLAV----EWGPQNIRVNSLAPGPISGTE 214
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 30.7 bits (70), Expect = 0.14
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y+ SK GV T+ EL +NAV PG+V T M
Sbjct: 173 YSASKHGVVGFTKALGL----ELARTGITVNAVCPGFVETPM 210
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 30.7 bits (70), Expect = 0.14
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
YA +K G+ L L ++ INAV PG++ T M
Sbjct: 360 YATTKAGMIGLAEALAP----VLADKGITINAVAPGFIETKM 397
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 30.7 bits (70), Expect = 0.16
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+ Y SK GV T+ EL +NAV PGYV T M
Sbjct: 173 APYTASKHGVVGFTKSVGF----ELAKTGITVNAVCPGYVETPM 212
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 30.7 bits (70), Expect = 0.17
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHAR---VVNLSSSAGH 50
+ + TN GL+ + L P L H +VNL S AG
Sbjct: 123 DTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGK 162
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.22
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 29/52 (55%)
Query: 58 ELKKRLMEDCVSERQLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVN 109
LKK L + L +Y DSA A++ +
Sbjct: 21 ALKK-L------QASLK--LYA-----------------DDSAPALA---IK 43
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 0.22
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 24/106 (22%)
Query: 22 LGLVRTCVFLFPLLRRHARVV-NLSSSA--GHLSQITNLELKKRLMEDCVSERQLTDMMY 78
LG + F + + ++ S + H +TN+ R+M ++ +
Sbjct: 562 LGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNIL---RMMGCVKKQKSARGI-- 616
Query: 79 EFMDITKEHPRAHVA-KGWP-------DSAYAVSKIGVN-LLTRIY 115
E A V P D Y+ SK+ + L R +
Sbjct: 617 -------ETRPAQVILPMSPNHGTFGGDGMYSESKLSLETLFNRWH 655
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 30.2 bits (68), Expect = 0.23
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 97 PDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY-VATNMSSFMGN 148
AY ++K G+++ + E + +NA+ P + T +G
Sbjct: 199 QHCAYTIAKYGMSMYVLGMAE----EFK-GEIAVNALWPKTAIHTAAMDMLGG 246
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 30.2 bits (69), Expect = 0.24
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y +K GV TR ELG + NAV PG + ++
Sbjct: 153 YVAAKGGVIGFTRALAT----ELGKYNITANAVTPGLIESDG 190
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 30.0 bits (68), Expect = 0.27
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 97 PDSAYAVSKIGVNLLTRIYQKKFD 120
PDS Y +SK L +Y KFD
Sbjct: 131 PDSLYGLSKCFGEDLASLYYHKFD 154
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 29.8 bits (68), Expect = 0.32
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 14 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGH 50
E+ I N G++ + P++ +R +++N+ S
Sbjct: 106 ERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGAL 144
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 29.5 bits (67), Expect = 0.33
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y SK R EL + +NA+ PG + T
Sbjct: 192 YGASKAAQLGFMRTAAI----ELAPRGVTVNAILPGNILTEG 229
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 29.4 bits (67), Expect = 0.33
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
YA S GV LTR ELG +N + PG++ T M
Sbjct: 148 YAASMAGVVGLTRTLAL----ELGRWGIRVNTLAPGFIETRM 185
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 29.5 bits (67), Expect = 0.34
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 12 QAEKTILTNYLGLVRTCVFLFPLLR--RHARVVNLSSSAGHLS 52
+ + G R L P +R VVN+SS G LS
Sbjct: 102 ELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLS 144
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 29.4 bits (67), Expect = 0.38
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
YA SK GV LT+ + ELG N+V PG++AT M
Sbjct: 165 YAASKAGVIGLTQTAAR----ELGRHGIRCNSVLPGFIATPM 202
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 29.2 bits (66), Expect = 0.42
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 83 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 120
+ + P PD Y VSK L R+Y KF
Sbjct: 124 LGPDVPAR------PDGLYGVSKCFGENLARMYFDKFG 155
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 29.0 bits (66), Expect = 0.47
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
YA SK GV + R + EL + N V PGY+ T+M
Sbjct: 153 YAASKAGVIGMARSIAR----ELSKANVTANVVAPGYIDTDM 190
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 29.1 bits (66), Expect = 0.49
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 14 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGH 50
++ N LGL+ + + R ++N+SS AG
Sbjct: 112 QRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGK 150
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 29.0 bits (66), Expect = 0.51
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
YA +K GV ++ + E +++ +N V PG++A++M
Sbjct: 151 YAAAKAGVIGFSKTAAR----EGASRNINVNVVCPGFIASDM 188
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 29.0 bits (66), Expect = 0.53
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 95 GWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
PDS YA +K G+ LT LG V N + PG++
Sbjct: 139 SEPDSEAYASAKGGIVALTHALAM----SLGPDVLV-NCIAPGWINVTE 182
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 29.1 bits (66), Expect = 0.55
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
YA SK G+ R + ELG+++ N V PG+V T+M
Sbjct: 159 YAASKAGLVGFARSLAR----ELGSRNITFNVVAPGFVDTDM 196
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 29.1 bits (66), Expect = 0.58
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y+ +K GV LT+ K EL ++ +NAV PG++AT+M
Sbjct: 178 YSAAKAGVIGLTKTVAK----ELASRGITVNAVAPGFIATDM 215
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 28.7 bits (65), Expect = 0.73
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
+A +K+G+ LT+ E N V PG + M
Sbjct: 161 FAAAKVGLVSLTKTVAY----EEAEYGITANMVCPGDIIGEM 198
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 28.3 bits (64), Expect = 0.80
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y+ +K G++ T + E+ + +N V PGY+ T+M
Sbjct: 163 YSTAKAGIHGFTMSLAQ----EVATKGVTVNTVSPGYIGTDM 200
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 28.2 bits (64), Expect = 0.84
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y +K GV LT+ K EL +++ +NA+ PG++AT+M
Sbjct: 154 YVAAKAGVIGLTKTSAK----ELASRNITVNAIAPGFIATDM 191
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 28.2 bits (64), Expect = 0.86
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
YA SK G+ T+ K E + NAV PG + T+M
Sbjct: 155 YAASKAGLIGFTKSIAK----EFAAKGIYCNAVAPGIIKTDM 192
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 28.3 bits (64), Expect = 0.95
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
YA +K G++ T+ E + +N V PGY+AT M
Sbjct: 175 YASAKAGIHGFTKTLAL----ETAKRGITVNTVSPGYLATAM 212
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 28.3 bits (64), Expect = 0.96
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
YA +K GV +TR + E+G++ +N V PG++ T+M
Sbjct: 177 YAAAKAGVAGMTRALAR----EIGSRGITVNCVAPGFIDTDM 214
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 28.3 bits (64), Expect = 0.98
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y+ SK GV T+ K EL +++ +NA+ PG+++++M
Sbjct: 193 YSSSKAGVIGFTKSLAK----ELASRNITVNAIAPGFISSDM 230
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 28.2 bits (64), Expect = 0.99
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y +K GV LT+ + EL ++ +NAV PG++ ++M
Sbjct: 154 YVATKAGVIGLTKSAAR----ELASRGITVNAVAPGFIVSDM 191
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 28.2 bits (64), Expect = 1.1
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y+ +K G+ T+ K EL ++ ++NAV PG++ T+M
Sbjct: 157 YSTTKAGLIGFTKSLAK----ELAPRNVLVNAVAPGFIETDM 194
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 27.8 bits (63), Expect = 1.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y SK G+ TR K E + +NAV PG++ T M
Sbjct: 152 YVASKAGLIGFTRAVAK----EYAQRGITVNAVAPGFIETEM 189
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 27.8 bits (63), Expect = 1.3
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y +K GV ++ E+ +++ +N V PG++AT+M
Sbjct: 154 YCAAKAGVIGFSKSLAY----EVASRNITVNVVAPGFIATDM 191
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 27.9 bits (63), Expect = 1.3
Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 50/132 (37%)
Query: 14 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSER 71
K N + VR + R+ RV+ ++S A
Sbjct: 110 FKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAA---------------------- 147
Query: 72 QLTDMMYEFMDITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI 130
+ + Y+ +K L+R + + +
Sbjct: 148 ---------------------IMPSQEMAHYSATKTMQLSLSRSLAE----LTTGTNVTV 182
Query: 131 NAVHPGYVATNM 142
N + PG T
Sbjct: 183 NTIMPGSTLTEG 194
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 27.7 bits (62), Expect = 1.5
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 79 EFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 120
F D V+ DS Y++SKI + Y K+
Sbjct: 159 TFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQ 200
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 27.5 bits (62), Expect = 1.5
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
YA +K GV T+ + E+ ++ +N V PG++ T+M
Sbjct: 155 YAAAKAGVIGFTKSMAR----EVASRGVTVNTVAPGFIETDM 192
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 27.5 bits (62), Expect = 1.5
Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y +K G+ ++ + E+ +++ +N + PG++ + M
Sbjct: 173 YCAAKAGLIGFSKALAQ----EIASRNITVNCIAPGFIKSAM 210
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 27.5 bits (62), Expect = 1.6
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 142
Y SK G+ +T+ E+ + +NAV PG++ ++M
Sbjct: 156 YCASKAGLIGMTKSLSY----EVATRGITVNAVAPGFIKSDM 193
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 27.1 bits (61), Expect = 2.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 97 PDSAYAVSKIGVNLLTRIYQKKFD 120
PD Y VSK+ + IY +K
Sbjct: 129 PDLMYGVSKLACEHIGNIYSRKKG 152
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 26.9 bits (60), Expect = 3.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 97 PDSAYAVSKIGVNLLTRIYQKKFDCE 122
P + + V+KI LL + Y +KF +
Sbjct: 133 PRTMFGVTKIAAELLGQYYYEKFGLD 158
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 26.4 bits (59), Expect = 3.6
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 14 EKTILTNYLGLVRTCVFLFPLLRRHAR----VVNLSSSAGH 50
+ N L L + ++ ++N++S +GH
Sbjct: 136 KDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGH 176
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 26.4 bits (59), Expect = 3.7
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
+AYA SK GV LT + EL + V PG T + +
Sbjct: 146 AAYAASKGGVVALTLPAAR----ELAGWGIRVVTVAPGLFDTPLLQGL 189
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 26.5 bits (59), Expect = 3.8
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
+AY+ SK G+ +T + +L + + PG T + + +
Sbjct: 168 AAYSASKGGIVGMTLPIAR----DLAPIGIRVMTIAPGLFGTPLLTSL 211
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 26.4 bits (59), Expect = 3.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 96 WPDSAYAVSKIGVNLLTRIYQKKFD 120
P S Y VSK V +L R Y K +
Sbjct: 147 RPMSPYGVSKASVGMLARQYVKAYG 171
>1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio
harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A
3fgc_B*
Length = 324
Score = 26.2 bits (58), Expect = 4.9
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 83 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQ 116
T+ P V + +K+G+ L+ R
Sbjct: 163 FTEGGPAQFVNATSKEVVEWAAKLGLPLVFRWDD 196
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 26.0 bits (58), Expect = 5.1
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
+AYA SK GV LT + EL + + PG T M + M
Sbjct: 161 AAYAASKGGVAALTLPAAR----ELARFGIRVVTIAPGIFDTPMMAGM 204
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 26.0 bits (58), Expect = 5.6
Identities = 4/39 (10%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 14 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGH 50
+++ V + + R+V + S
Sbjct: 110 DESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLL 148
Score = 25.6 bits (57), Expect = 8.5
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 101 YAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 142
+ ++ V + R EL V +NAV P + T+
Sbjct: 157 SNIMRLPVIGVVRTLAL----ELA-PHGVTVNAVLPSLILTDR 194
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding,
metal selectivity, ferredoxin fold, ATP-binding,
hydrolase; NMR {Arabidopsis thaliana}
Length = 95
Score = 25.1 bits (55), Expect = 5.8
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 103 VSKIGVNLLTRIYQKKFDCELGNQDKVINAVHP-GYVAT 140
V + V + +R D L + ++ A++ A
Sbjct: 44 VKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEAN 82
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 25.7 bits (57), Expect = 6.8
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 5/40 (12%)
Query: 81 MDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 120
+ T ++ P + Y +SK Y +
Sbjct: 128 KENTPQYTIME-----PSTVYGISKQAGERWCEYYHNIYG 162
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 25.6 bits (57), Expect = 7.1
Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 46/131 (35%)
Query: 12 QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLMEDCVSER 71
Q ++T N L PLL + A ++ SS
Sbjct: 152 QFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS------------------------- 186
Query: 72 QLTDMMYEFMDITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVIN 131
I P H+ YA +K + +R K ++ + +N
Sbjct: 187 -----------IQAYQPSPHLL------DYAATKAAILNYSRGLAK----QVAEKGIRVN 225
Query: 132 AVHPGYVATNM 142
V PG + T +
Sbjct: 226 IVAPGPIWTAL 236
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 25.3 bits (56), Expect = 8.7
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 99 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 146
+AY+ SK GV +T + +L + + + PG T + + +
Sbjct: 161 AAYSASKGGVVGMTLPIAR----DLASHRIRVMTIAPGLFDTPLLASL 204
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 25.2 bits (56), Expect = 9.3
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 85 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 120
P + P S YA SK+G+ ++ +Q+
Sbjct: 127 DTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASV 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.396
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,222,962
Number of extensions: 119406
Number of successful extensions: 675
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 248
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.0 bits)