BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16225
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 77/109 (70%), Positives = 91/109 (83%), Gaps = 3/109 (2%)
Query: 183 QPIKQDMTCLWIDTPG---PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR 239
QPIKQ+++C WID P+K+C + F+ MHE+VTH+T+EHVGGPE H C+W+ CPR
Sbjct: 8 QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR 67
Query: 240 NGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G+ FKAKYKLVNHIRVHTGEKPFPCPFP CGK+FARSENLKIHKRTHT
Sbjct: 68 EGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 66/85 (77%), Gaps = 3/85 (3%)
Query: 183 QPIKQDMTCLWIDTPG---PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR 239
QPIKQ+++C WID P+K+C + F+ MHE+VTH+T+EHVGGPE H C+W+ CPR
Sbjct: 8 QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR 67
Query: 240 NGRPFKAKYKLVNHIRVHTGEKPFP 264
G+ FKAKYKLVNHIRVHTGEK P
Sbjct: 68 EGKSFKAKYKLVNHIRVHTGEKSGP 92
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
C + F++ ++V H+ EH+ G E C W GC R RPFKA+Y LV H+R HTGEKP
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHG-ERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP 67
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHT 288
C F C K ++R ENLK H R+HT
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHT 93
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 194 IDTPGPR----KTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYK 249
+ T GPR CGK F ++ H V P C ++GC G+ F +
Sbjct: 27 LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP----FQCTFEGC---GKRFSLDFN 79
Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
L H+R+HTG++P+ CPF C K FA+S NLK H TH +
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
CGK F+ + H P CP G+ F K L H R HTGEKP
Sbjct: 27 CGKSFSRSDHLAEHQRTHTGEKPY---------KCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHT 288
+ C P CGK F++ NL+ H+RTHT
Sbjct: 78 YKC--PECGKSFSQRANLRAHQRTHT 101
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
CGK F+ + + H P CP G+ F + L H R HTGEKP
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPY---------KCPECGKSFSREDNLHTHQRTHTGEKP 161
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHT 288
+ C P CGK F+R + L +H+RTHT
Sbjct: 162 YKC--PECGKSFSRRDALNVHQRTHT 185
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
CGK F+ + H P CP G+ F L H R HTGEKP
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKPY---------ACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHT 288
+ C P CGK F+R +NL H+RTHT
Sbjct: 134 YKC--PECGKSFSREDNLHTHQRTHT 157
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
CP G+ F L H R HTGEKP+ C P CGK F+ ++L H+RTHT
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTHTGEKPYKC--PECGKSFSDKKDLTRHQRTHT 73
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 251 VNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
V + GEKP+ CP CGK F+RS++L H+RTHT
Sbjct: 10 VAQAALEPGEKPYACP--ECGKSFSRSDHLAEHQRTHT 45
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
CP G+ F L H R HTGEKP+ C P CGK F++S +L+ H+RTHT
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKC--PECGKSFSQSSDLQKHQRTHT 56
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
CGK F+ + H P CP G+ F L H R HTGEKP
Sbjct: 10 CGKSFSQSSNLQKHQRTHTGEKPY---------KCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 263 FPCPFPTCGKVFARSENLKIHKRTH 287
+ C P CGK F+RS++L H+RTH
Sbjct: 61 YKC--PECGKSFSRSDHLSRHQRTH 83
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ CP CGK F++S NL+ H+RTHT
Sbjct: 2 EKPYKCP--ECGKSFSQSSNLQKHQRTHT 28
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 224 GPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIH 283
G TH C + GC G+ + L H+R HTGEKP+ C + CG FARS+ L H
Sbjct: 1 GSRTATHTCDYAGC---GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 57
Query: 284 KRTHT 288
R HT
Sbjct: 58 YRKHT 62
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
CGK + + HL P + C WDGC G F +L H R HTG +P
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKP----YHCDWDGC---GWKFARSDELTRHYRKHTGHRP 66
Query: 263 FPCPFPTCGKVFARSENLKIHKRTH 287
F C C + F+RS++L +H + H
Sbjct: 67 FQC--QKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 229 THACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TH C + GC G+ + L H+R HTGEKP+ C + CG FARS+ L H R HT
Sbjct: 5 THTCDYAGC---GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
CGK + + HL P + C WDGC G F +L H R HTG +P
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKP----YHCDWDGC---GWKFARSDELTRHYRKHTGHRP 65
Query: 263 FPCPFPTCGKVFARSENLKIHKRTH 287
F C C + F+RS++L +H + H
Sbjct: 66 FQC--QKCDRAFSRSDHLALHMKRH 88
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 232 CFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
C + GC N R FK + L H R HTGEKP+ C F C + F+RS+ LK H+R HT V
Sbjct: 9 CAYPGC--NKRYFKLSH-LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 26/47 (55%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIH 283
C R F L H R HTGEKPF C +P+C K FARS+ L H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
C K + + + H + +H G + C + C R F +L H R HTG KP
Sbjct: 14 CNKRYFKLSHLQMH-SRKHTGEK---PYQCDFKDCERR---FSRSDQLKRHQRRHTGVKP 66
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHT 288
F C TC + F+RS++LK H RTHT
Sbjct: 67 FQCK--TCQRKFSRSDHLKTHTRTHT 90
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ ++PF C +P C K + + +L++H R HT
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT 32
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 229 THACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
+H C GC G+ + L H R HTGEKPF C + C + FARS+ L H+RTH
Sbjct: 17 SHICSHPGC---GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 265 CPFPTCGKVFARSENLKIHKRTHT 288
C P CGK + +S +LK H RTHT
Sbjct: 20 CSHPGCGKTYFKSSHLKAHTRTHT 43
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
P ++C + F+ E+ H+ + H G C R F L HIR HT
Sbjct: 8 PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
GEKPF C CG+ FARS+ K H + H
Sbjct: 59 GEKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+AC + C R F +L HIR+HTG+KPF C C + F+RS++L H RTHT
Sbjct: 5 YACPVESCDRR---FSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 58
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E+P+ CP +C + F+RS+ L H R HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHT 30
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
P ++C + F+ E+ H+ + H G C R F L HIR HT
Sbjct: 7 PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 57
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
GEKPF C CG+ FARS+ K H + H
Sbjct: 58 GEKPFACDI--CGRKFARSDERKRHTKIH 84
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+AC + C R F +L HIR+HTG+KPF C C + F+RS++L H RTHT
Sbjct: 4 YACPVESCDRR---FSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 57
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E+P+ CP +C + F+RS+ L H R HT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHT 29
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
P ++C + F+ E+ H+ + H G C R F L HIR HT
Sbjct: 8 PVESCDRRFSRSAELTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
GEKPF C CG+ FARS+ K H + H
Sbjct: 59 GEKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+AC + C R F +L HIR+HTG+KPF C C + F+RS++L H RTHT
Sbjct: 5 YACPVESCDRR---FSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 58
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E+P+ CP +C + F+RS L H R HT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHT 30
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
P ++C + F+ E+ H+ + H G C R F L HIR HT
Sbjct: 8 PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
GEKPF C CG+ FARS+ K H + H
Sbjct: 59 GEKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+AC + C R F +L HIR+HTG+KPF C C + F+RS++L H RTHT
Sbjct: 5 YACPVESCDRR---FSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 58
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E+P+ CP +C + F+RS+ L H R HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHT 30
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 201 KTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
K CGK F + THL + P C G+ F K + H +HTGE
Sbjct: 5 KICGKSFKRSSTLSTHLLIHSDTRPY---------PCQYCGKRFHQKSDMKKHTFIHTGE 55
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
KP C CGK F++S NL H R HT
Sbjct: 56 KPHKC--QVCGKAFSQSSNLITHSRKHT 81
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
C G+ FK L H+ +H+ +P+PC + CGK F + ++K H HT
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHT 53
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
P ++C + F++ + H+ + H G C R F L HIR HT
Sbjct: 8 PVESCDRRFSDSSNLTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
GEKPF C CG+ FARS+ K H + H
Sbjct: 59 GEKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+AC + C R F L HIR+HTG+KPF C C + F+RS++L H RTHT
Sbjct: 5 YACPVESCDRR---FSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 58
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E+P+ CP +C + F+ S NL H R HT
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHT 30
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
P ++C + F+ ++ H+ + H G C R F L HIR HT
Sbjct: 8 PVESCDRRFSRSADLTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
GEKPF C CG+ FARS+ K H + H
Sbjct: 59 GEKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+AC + C R F L HIR+HTG+KPF C C + F+RS++L H RTHT
Sbjct: 5 YACPVESCDRR---FSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 58
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E+P+ CP +C + F+RS +L H R HT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHT 30
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 225 PECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK 284
P+ +AC + C R F +L HIR+HTG+KPF C C + F+RS++L H
Sbjct: 15 PKMRPYACPVESCDRR---FSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHI 69
Query: 285 RTHT 288
RTHT
Sbjct: 70 RTHT 73
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
P ++C + F+ + H+ + H G C R F L HIR HT
Sbjct: 8 PVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
GEKPF C CG+ FARS+ K H + H
Sbjct: 59 GEKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+AC + C R F L HIR+HTG+KPF C C + F+RS++L H RTHT
Sbjct: 5 YACPVESCDRR---FSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 58
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E+P+ CP +C + F++S +L H R HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHT 30
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 48.1 bits (113), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
GC G+ F LV H RVHTGEKP+ C CGK F+++ L H+R HT
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHT 66
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F+RS L H+R HT
Sbjct: 12 EKPYGC--VECGKAFSRSSILVQHQRVHT 38
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK 284
CP + F +KY L H R HTGEKPF C P CGK + R ENL H+
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFEC--PKCGKCYFRKENLLEHE 55
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIH 283
C F+ + +L H+ HTGE P+ C +C + F + ++L+ H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSH 113
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 193 WIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVN 252
+ D PG C K++ + HL P + C W+GC F +L
Sbjct: 17 YCDYPG----CTKVYTKSSHLKAHLRTHTGEKP----YKCTWEGCDWR---FARSDELTR 65
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
H R HTG KPF C C + F+RS++L +H + H
Sbjct: 66 HYRKHTGAKPFQC--GVCNRSFSRSDHLALHMKRH 98
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
H C + GC + + L H+R HTGEKP+ C + C FARS+ L H R HT
Sbjct: 16 HYCDYPGCTK---VYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+AC + C R F K L HIR+HTG+KPF C C + F++ +L H RTHT
Sbjct: 5 YACPVESCDRR---FSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHT 58
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
P ++C + F+ + TH+ + H G C R F + L HIR HT
Sbjct: 8 PVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICM--------RNFSQQASLNAHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFA----RSENLKIHKR 285
GEKPF C CG+ FA R+ + KIH R
Sbjct: 59 GEKPFACDI--CGRKFATLHTRTRHTKIHLR 87
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E+P+ CP +C + F++ NL H R HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHT 30
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.1 bits (105), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK 284
C RN F L HIR HTGEKPF C CG+ FARS+ K H+
Sbjct: 9 CMRN---FSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHR 51
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
KPF C C + F+RS++L H RTHT
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHT 27
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
C R F+ K L +H VHTGEKP+ C CG F R NLK H R H+
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHS 69
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+AC + C R F K L HIR+HTG+KPF C C + F++ L H RTHT
Sbjct: 5 YACPVESCDRR---FSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHT 58
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
P ++C + F+ + TH+ + H G C R F L HIR HT
Sbjct: 8 PVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICM--------RNFSQHTGLNQHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFA----RSENLKIHKR 285
GEKPF C CG+ FA R + KIH R
Sbjct: 59 GEKPFACDI--CGRKFATLHTRDRHTKIHLR 87
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E+P+ CP +C + F++ NL H R HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHT 30
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G + +KL H+ HTGEKPFPC C K F +L H THT
Sbjct: 12 GAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 59
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
CG +N ++ HL+ +H G C +GC + F + + L H HTGEK
Sbjct: 11 CGAAYNKNWKLQAHLS-KHTGEK---PFPCKEEGCEKG---FTSLHHLTRHSLTHTGEKN 63
Query: 263 FPCPFPTCGKVFARSENLKIH 283
F C C F N+K H
Sbjct: 64 FTCDSDGCDLRFTTKANMKKH 84
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 41.2 bits (95), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
C G+ F L H R HTGEKP+ C CGK F + +L H R HT
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHT 70
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
C G+ F K KL H+R HTG KP+ C TC A S +L H R H++
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSD 61
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 196 TPGPRK--TCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNH 253
+ GP K CGK F+ ++ TH+ H G C + + L H
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSS--------LNKH 55
Query: 254 IRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+R+H+ E+PF C C S L +H R+HT
Sbjct: 56 LRIHSDERPFKCQI--CPYASRNSSQLTVHLRSHT 88
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 269 TCGKVFARSENLKIHKRTHTEV 290
CGK F+R + LK H R HT V
Sbjct: 13 VCGKCFSRKDKLKTHMRCHTGV 34
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
C GR F Y L+ H R HT E+P+ C C K F R ++L+ H+ H++
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSK 70
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 201 KTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
K CG+ F + ++ H P C + F+ + L +H +H+ E
Sbjct: 21 KFCGRHFTKSYNLLIHERTHTDERPY---------TCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
KPF C CGK F +S L +HK H +
Sbjct: 72 KPFKCQ--ECGKGFCQSRTLAVHKTLHMQT 99
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G + +KL H+ HTGEKPFPC C K F +L H THT
Sbjct: 21 GAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 197 PGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHI-R 255
P + C K F ++H + H ++ H G T C DGC F K + H R
Sbjct: 44 PCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFT---CDSDGCDLR---FTTKANMKKHFNR 96
Query: 256 VHTGE-KPFPCPFPTCGKVFARSENLKIHKRTHTE 289
H + + C F CGK F + LK+H+ +HT+
Sbjct: 97 FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 205 KMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFP 264
K FN H I + V C ++ C G+ FK +L H HT + P+
Sbjct: 92 KHFNRFHNIKICVYV------------CHFENC---GKAFKKHNQLKVHQFSHTQQLPYE 136
Query: 265 CPFPTCGKVFARSENLKIHKRTHT 288
CP C K F+ LK H++ H
Sbjct: 137 CPHEGCDKRFSLPSRLKRHEKVHA 160
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
C G+ F+ Y L H H+GEKP+ C P CG F R + + H R+H
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRSH 58
Score = 37.4 bits (85), Expect = 0.009, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 201 KTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
+ CGK+F +++ + H + H G + CP G FK K ++ H+R H G
Sbjct: 11 EICGKIFRDVYHLNRH-KLSHSGEKPYS--------CPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 261 --KPFPCPFPTCGKVFARSENLKIH-KRTHT 288
KP+ C +CGK F+R ++L H K+ H+
Sbjct: 62 VGKPYICQ--SCGKGFSRPDHLNGHIKQVHS 90
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
C G+ F++ Y L H+R HTGEKP+ C F C A+ +L+ H H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEF--CEYAAAQKTSLRYHLERH 55
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIH 283
GC G+ FK K+ LV H+++HTG KP+ C C K F ++ H
Sbjct: 39 GCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSFHRH 84
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
G+ F K + H+ +H G +P+ C CGK F +L H + HT +
Sbjct: 16 GKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFKMKHHLVGHMKIHTGI 63
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
TG KPF C +P C + F+RS++L +H++ H V
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRHMLV 35
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
+PF C + CGK F RS+ L+ HKRTHT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 232 CFWDGCPRNGRPFKAKYKLVNHIRV-HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
C + GC GR F + L +H + H +K F CP P CGK F ++LK H + H++
Sbjct: 10 CDFPGC---GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKR 285
+G PC FP CG++F+ + L HK+
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKK 30
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 194 IDTPGPRKTCGKMFNNMHEIVTHLTVEHV--GGPECTTHACFWDGCPRNGRPFKAKYKLV 251
D PG CG++F+N + H +H+ C AC G+ F K L
Sbjct: 10 CDFPG----CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPAC--------GKSFNFKKHLK 57
Query: 252 NHIRVHTGEKPFPCPF 267
H+++H+ + + C F
Sbjct: 58 EHMKLHSDTRDYICEF 73
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
EKPF C +P CG F+RS+ L H+R+H+ V
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGV 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEKP 262
GC G+ F++K L+ H+R HTGEKP
Sbjct: 12 GCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+G KP+ C CGK F L IH RTHT
Sbjct: 6 SGVKPYGCS--ECGKAFRSKSYLIIHMRTHT 34
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ C ++ C G+ FK +L H HT + P+ CP C K F+ LK H++ H
Sbjct: 2 YVCHFENC---GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHTE 289
+ C F CGK F + LK+H+ +HT+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ 28
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 34.7 bits (78), Expect = 0.064, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEKP+ C CGK F +S L IH+R HT
Sbjct: 6 SGEKPYVCQ--ECGKAFTQSSCLSIHRRVHT 34
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ C ++ C G+ FK +L H HT + P+ CP C K F+ LK H++ H
Sbjct: 2 YVCHFENC---GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHTE 289
+ C F CGK F + LK+H+ +HT+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ 28
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFP 264
C G+ F+AK LV H R+HTGEK P
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGP 42
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+KPF C CGK F NL H+R HT
Sbjct: 10 QKPFECTH--CGKSFRAKGNLVTHQRIHT 36
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
R TG KPF CP C + F+RS++L +H++ H V
Sbjct: 4 RGSTGIKPFQCP--DCDRSFSRSDHLALHRKRHMLV 37
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.9 bits (76), Expect = 0.099, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEKP+ C CGK F L IH+RTHT
Sbjct: 6 SGEKPYECT--DCGKAFGLKSQLIIHQRTHT 34
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEKP 262
GC G+ F +K L+ H+R H+GEKP
Sbjct: 14 GCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F+ L IH RTH+
Sbjct: 10 EKPYGCS--ECGKAFSSKSYLIIHMRTHS 36
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKR 285
C R F + L H R HT EKP+PC C + F R + L H +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQ 51
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F KY+L++H R H GEKP
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E P+ C CGK F+R L H+RTH
Sbjct: 10 ENPYECH--ECGKAFSRKYQLISHQRTHA 36
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
KPF C TC + F+RS++LK H RTHT
Sbjct: 1 KPFQCK--TCQRKFSRSDHLKTHTRTHT 26
>pdb|1NCS|A Chain A, Nmr Study Of Swi5 Zinc Finger Domain 1
Length = 47
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
+K F C FP C K F R N++ H +TH E
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.17, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
T EKP+ C CGK F R+ L +H+RTH+
Sbjct: 8 TREKPYECS--ECGKAFIRNSQLIVHQRTHS 36
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F R L IH+++HT
Sbjct: 10 EKPYKCS--DCGKAFTRKSGLHIHQQSHT 36
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 32.3 bits (72), Expect = 0.31, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 262 PFPCPFPTCGKVFARSENLKIHKRTHT 288
PF C F CGK F+ NLK H + HT
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHT 27
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
TG KPF CP C F+RS++L +H++ H V
Sbjct: 3 TGIKPFQCP--DCDWSFSRSDHLALHRKRHMLV 33
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F K L+ H R+HTGEKP
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E+ + C CGK FAR L +H+R HT
Sbjct: 10 ERHYECS--ECGKAFARKSTLIMHQRIHT 36
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK FA+ NL H+R HT
Sbjct: 10 EKPYRCG--ECGKAFAQKANLTQHQRIHT 36
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F K L H R+HTGEKP
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F KL H RVHTGEKP
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
KP+ C CGK F+++ L H+R HT
Sbjct: 11 KPYQCN--ECGKAFSQTSKLARHQRVHT 36
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.0 bits (71), Expect = 0.45, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEKP+ C CGK F++ +L +H+R HT
Sbjct: 6 SGEKPYQCK--ECGKSFSQRGSLAVHERLHT 34
>pdb|1BHI|A Chain A, Structure Of Transactivation Domain Of Cre-Bp1ATF-2, Nmr,
20 Structures
Length = 38
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
+ +KPF C P CG+ F ++L +HK H
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F KL H R+HTGEKP
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F+++ L H+R HT
Sbjct: 10 EKPYKCN--ECGKAFSQTSKLARHQRIHT 36
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F L+ H RVHTGEKP
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F+++ +L H+R HT
Sbjct: 10 EKPYECK--ECGKAFSQTTHLIQHQRVHT 36
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKPF C C K F NL +H+RTHT
Sbjct: 10 EKPFECS--ECQKAFNTKSNLIVHQRTHT 36
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C + F K L+ H R HTGEKP
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 30.8 bits (68), Expect = 0.82, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
++P+ C P C K F R+ +L HK++H E
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
EKP+ C CGKVF ++ +L H+R HT V
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLANHQRIHTGV 38
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E PF C CGKVF NL IH++ HT
Sbjct: 10 ENPFICS--ECGKVFTHKTNLIIHQKIHT 36
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F K L+ H ++HTGE+P
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 0.97, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
+GE P+ C CGK F R + L H+RTH
Sbjct: 6 SGENPYECS--ECGKAFNRKDQLISHQRTH 33
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEKP 262
GC G+ F K L H R HTGEKP
Sbjct: 14 GCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F++ L H+RTHT
Sbjct: 10 EKPYGCN--ECGKTFSQKSILSAHQRTHT 36
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F L NH R+HTGEKP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGKVF ++ +L H R HT
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLTNHWRIHT 36
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C GR F K L H R+HTGEKP
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F+ L +H+R+HTGEKP
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+G+KP+ C CGK F L IH+R HT
Sbjct: 6 SGQKPYVCN--ECGKAFGLKSQLIIHERIHT 34
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGKVF ++ +L H+R HT
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLARHRRVHT 36
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEK 261
GC G+ F +K L+ H R+HTGEK
Sbjct: 12 GCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.0 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEKP+ C CGK F+ L +H+R HT
Sbjct: 6 SGEKPYGCN--ECGKDFSSKSYLIVHQRIHT 34
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F + L +H+R HT
Sbjct: 10 EKPYECS--DCGKSFIKKSQLHVHQRIHT 36
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.0 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
+GEKP+ CP CG F R + + H R+H
Sbjct: 6 SGEKPYSCP--VCGLRFKRKDRMSYHVRSH 33
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C C K F NL +H+RTHT
Sbjct: 10 EKPYECN--ECQKAFNTKSNLMVHQRTHT 36
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEKP+ C CGK F R + H+R HT
Sbjct: 6 SGEKPYVCT--ECGKAFIRKSHFITHERIHT 34
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
C G+ ++ L H R H G +P C P CGK F + H + H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSC--PECGKCFRDQSEVNRHLKVH 55
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C + G+ F K L+ HIRVHTG P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.1 bits (61), Expect = 6.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F++ +L +H R HT
Sbjct: 9 EKPYRCD--QCGKAFSQKGSLIVHIRVHT 35
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ FK K L+ H R HTGEKP
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTH 287
EKP+ C CGK + R NL +H+R H
Sbjct: 10 EKPYKCE--DCGKGYNRRLNLDMHQRVH 35
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F L+ H R+HTGEKP
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F L+IH++ HT
Sbjct: 10 EKPYKCS--DCGKSFTWKSRLRIHQKCHT 36
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 2.7, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
+GEKP+ C CGK F L +HK HT V
Sbjct: 6 SGEKPYSCN--ECGKAFTFKSQLIVHKGVHTGV 36
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C + G+ + +K+ L H +VHTGE+P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
+GEKPF C C K F+ L +H++TH E
Sbjct: 6 SGEKPFGCS--CCEKAFSSKSYLLVHQQTHAE 35
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ + + L H RVHTGEKP
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKPF C CGK F ++ L H+R HT
Sbjct: 10 EKPFKCE--ECGKRFTQNSQLHSHQRVHT 36
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F +L +H RVHTGEKP
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKPF C CGK F+ S L H+R HT
Sbjct: 10 EKPFECA--ECGKSFSISSQLATHQRIHT 36
Score = 28.9 bits (63), Expect = 3.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F +L H R+HTGEKP
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F + L+ H ++HTGEKP
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F +LV H R+HTGEKP
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 5.5, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C + CGK F S L H+R HT
Sbjct: 10 EKPYVCDY--CGKAFGLSAELVRHQRIHT 36
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
C R + L H +H+ EK +PC + C KVF +E H+ HT
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRY--CEKVFPLAEYRTKHEIHHT 74
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIH-KRTH 287
R HTGEKP+ C C K F + + L +H KR H
Sbjct: 8 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYH 39
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKPF C CGK F ++ +L H+R HT
Sbjct: 10 EKPFQCE--ECGKRFTQNSHLHSHQRVHT 36
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F L +H RVHTGEKP
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F R +L H+R HT
Sbjct: 10 EKPYKCS--ECGKAFHRHTHLNEHRRIHT 36
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F + L H ++HTGEKP
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F NL H++ HT
Sbjct: 10 EKPYRCA--ECGKAFTDRSNLFTHQKIHT 36
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 264 PCPFPTCGKVFARSENLKIHKRTHTE 289
PC CGK F L +H+RTH +
Sbjct: 12 PCKCTECGKAFCWKSQLIMHQRTHVD 37
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E P+ C CGKVF+R + L H++TH+
Sbjct: 10 ENPYECC--ECGKVFSRKDQLVSHQKTHS 36
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
+GEKP+ C CGK F L +H+ HT V
Sbjct: 6 SGEKPYVCS--DCGKAFTFKSQLIVHQGIHTGV 36
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F +L H R+HTGEKP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F L+ H+R HT
Sbjct: 10 EKPYNCE--ECGKAFIHDSQLQEHQRIHT 36
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F K L H ++HTGEKP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+K C CGKV+ ++ +L+ H R HT
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F+A L H +HTGEKP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK F+ ++L +H+R H+
Sbjct: 10 EKPYECS--VCGKAFSHRQSLSVHQRIHS 36
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGE 260
C G+ F++K L+ H R HTGE
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGE 38
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
KP+ C CGK F L IH RTHT
Sbjct: 11 KPYVCN--ECGKAFRSKSYLIIHTRTHT 36
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 5.2, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGK + R +L H+R HT
Sbjct: 10 EKPYKCV--ECGKGYKRRLDLDFHQRVHT 36
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+PC CG F + LK H R HT
Sbjct: 9 EKPYPCEI--CGTRFRHLQTLKSHLRIHT 35
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F K L H R+HTGEKP
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F +L+ H R+HTGE P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C G+ F Y+L H HT EKP
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGKVF + L H+R HT
Sbjct: 10 EKPYKCN--ECGKVFRHNSYLSRHQRIHT 36
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKPF C CGK F+ L H+R HT
Sbjct: 10 EKPFDCI--DCGKAFSDHIGLNQHRRIHT 36
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
EKP+ C CGK F L +H+RTH V
Sbjct: 10 EKPYECN--ECGKAFIWKSLLIVHERTHAGV 38
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C CGKVF R+ +L H+ HT
Sbjct: 10 EKPYKCH--ECGKVFRRNSHLARHQLIHT 36
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.7 bits (60), Expect = 8.3, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
EKP+ C CGK F S +L H R HT+
Sbjct: 10 EKPYSCN--VCGKAFVLSAHLNQHLRVHTQ 37
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 8.5, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKPF C CGK F+R L +H + HT
Sbjct: 10 EKPFKCV--ECGKGFSRRSALNVHHKLHT 36
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.7 bits (60), Expect = 8.6, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 270 CGKVFARSENLKIHKRTHT 288
C + FAR E+LK H R+HT
Sbjct: 8 CTRAFARQEHLKRHYRSHT 26
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,600,193
Number of Sequences: 62578
Number of extensions: 391419
Number of successful extensions: 2159
Number of sequences better than 100.0: 156
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1841
Number of HSP's gapped (non-prelim): 323
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)