RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16225
(290 letters)
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 161 bits (409), Expect = 7e-50
Identities = 77/109 (70%), Positives = 91/109 (83%), Gaps = 3/109 (2%)
Query: 183 QPIKQDMTCLWIDT---PGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR 239
QPIKQ+++C WID P+K+C + F+ MHE+VTH+T+EHVGGPE H C+W+ CPR
Sbjct: 8 QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR 67
Query: 240 NGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G+ FKAKYKLVNHIRVHTGEKPFPCPFP CGK+FARSENLKIHKRTHT
Sbjct: 68 EGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
Score = 53.1 bits (128), Expect = 5e-09
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 5/51 (9%)
Query: 241 GRPFKAKYKLVNHI---RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G + + + + + P +C + F+ L H
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEH 49
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 128 bits (323), Expect = 5e-37
Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
C + F++ ++V H+ EH+ G C W GC R RPFKA+Y LV H+R HTGEKP
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGER-KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP 67
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHT 288
C F C K ++R ENLK H R+HT
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHT 93
Score = 61.5 bits (150), Expect = 6e-12
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Query: 203 CGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHI-RVHTG 259
C K ++ + + THL H G P C C + F H R H+
Sbjct: 75 CRKSYSRLENLKTHLRS-HTGEKPYMCEHEGC--------SKAFSNASDRAKHQNRTHSN 125
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EKP+ C P C K + +L+ H +T
Sbjct: 126 EKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 35.3 bits (82), Expect = 0.009
Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIH---KRTHT 288
E C + F E L H + H
Sbjct: 1 ETDCRWD--GCSQEFDSQEQLVHHINSEHIHG 30
Score = 27.9 bits (63), Expect = 2.4
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGG-PECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTG 259
C K F+N + H H P + C GC + + L H++ G
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKP----YVCKLPGC---TKRYTDPSSLRKHVKTVHG 155
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 120 bits (301), Expect = 1e-34
Identities = 53/87 (60%), Positives = 66/87 (75%), Gaps = 3/87 (3%)
Query: 182 RQPIKQDMTCLWIDT---PGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCP 238
QPIKQ+++C WID P+K+C + F+ MHE+VTH+T+EHVGGPE H C+W+ CP
Sbjct: 7 GQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECP 66
Query: 239 RNGRPFKAKYKLVNHIRVHTGEKPFPC 265
R G+ FKAKYKLVNHIRVHTGEK P
Sbjct: 67 REGKSFKAKYKLVNHIRVHTGEKSGPS 93
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 75.4 bits (186), Expect = 1e-17
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 229 THACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
H C + GC + + L H+R HTGEKP+ C + C FARS+ L H R HT
Sbjct: 15 IHYCDYPGC---TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Score = 70.3 bits (173), Expect = 1e-15
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 203 CGKMFNNMHEIVTHLTVEHVG-GPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK 261
C K++ + HL H G P + C W+GC F +L H R HTG K
Sbjct: 23 CTKVYTKSSHLKAHLRT-HTGEKP----YKCTWEGC---DWRFARSDELTRHYRKHTGAK 74
Query: 262 PFPCPFPTCGKVFARSENLKIHKRTHT 288
PF C C + F+RS++L +H + H
Sbjct: 75 PFQCGV--CNRSFSRSDHLALHMKRHQ 99
Score = 50.3 bits (121), Expect = 2e-08
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ C +P C KV+ +S +LK H RTHT
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHT 41
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 73.7 bits (182), Expect = 4e-17
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 232 CFWDGCPRNGRPFKAKYKLVNHIRV-HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
C + GC GR F + L +H + H +K F CP P CGK F ++LK H + H+
Sbjct: 10 CDFPGC---GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
Score = 63.0 bits (154), Expect = 3e-13
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKR-THT 288
+G PC FP CG++F+ + L HK+ H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI 34
Score = 55.2 bits (134), Expect = 2e-10
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 203 CGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
CG++F+N + H +H+ C AC G+ F K L H+++H+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPAC--------GKSFNFKKHLKEHMKLHSDT 66
Query: 261 KPFPCPFPTCGKVF 274
+ + C F G
Sbjct: 67 RDYICEF--SGPSS 78
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 73.4 bits (181), Expect = 5e-17
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ C ++ C G+ FK +L H HT + P+ CP C K F+ LK H++ H
Sbjct: 2 YVCHFENC---GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 51.1 bits (123), Expect = 7e-09
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
CGK F +++ H H + C +GC + F +L H +VH G
Sbjct: 9 CGKAFKKHNQLKVHQFS-HTQQL---PYECPHEGC---DKRFSLPSRLKRHEKVHAGYPC 61
Query: 263 FPCPFPTCGKVFAR-SENLKIHKRTH 287
+C V + LK H
Sbjct: 62 KKD--DSCSFVGKTWTLYLKHVAECH 85
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 72.8 bits (179), Expect = 5e-17
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVF 274
+ + + +H C GC G+ + L H R HTGEKPF C + C + F
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGC---GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRF 59
Query: 275 ARSENLKIHKRTH 287
ARS+ L H+RTH
Sbjct: 60 ARSDELSRHRRTH 72
Score = 57.8 bits (140), Expect = 2e-11
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 246 AKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ + C P CGK + +S +LK H RTHT
Sbjct: 1 GSSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT 43
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 73.7 bits (182), Expect = 9e-17
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGG-P-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
CGK F ++ H V H G P +CT C G+ F + L H+R+HTG+
Sbjct: 40 CGKAFVESSKLKRHQLV-HTGEKPFQCTFEGC--------GKRFSLDFNLRTHVRIHTGD 90
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
+P+ CPF C K FA+S NLK H TH
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 71.4 bits (176), Expect = 7e-16
Identities = 37/93 (39%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGP---ECTTHACFWDGCPRNGRPFKAKYKLVNHIR 255
P K C KMF + + H H GP C C G+ F KL H
Sbjct: 9 PHKGCTKMFRDNSAMRKH---LHTHGPRVHVCA--EC--------GKAFVESSKLKRHQL 55
Query: 256 VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
VHTGEKPF C F CGK F+ NL+ H R HT
Sbjct: 56 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT 88
Score = 56.8 bits (138), Expect = 2e-10
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 229 THACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
T AC GC + F+ + H+ H G + C CGK F S LK H+ HT
Sbjct: 5 TIACPHKGC---TKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHT 58
Score = 47.9 bits (115), Expect = 2e-07
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
+ CP C K+F + ++ H TH
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGP 32
Score = 36.7 bits (86), Expect = 0.002
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 203 CGKMFNNMHEIVTHLTVEHVG-GPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK 261
CGK F+ + TH+ + H G P + C +DGC + F L +HI H K
Sbjct: 70 CGKRFSLDFNLRTHVRI-HTGDRP----YVCPFDGC---NKKFAQSTNLKSHILTHAKAK 121
Query: 262 PF 263
Sbjct: 122 NN 123
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 72.2 bits (178), Expect = 1e-16
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
H C + GC G+ + L H+R HTGEKP+ C + CG FARS+ L H R HT
Sbjct: 6 HTCDYAGC---GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Score = 65.6 bits (161), Expect = 4e-14
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 203 CGKMFNNMHEIVTHLTVEHVG-GPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK 261
CGK + + HL H G P + C WDGC G F +L H R HTG +
Sbjct: 13 CGKTYTKSSHLKAHLRT-HTGEKP----YHCDWDGC---GWKFARSDELTRHYRKHTGHR 64
Query: 262 PFPCPFPTCGKVFARSENLKIHKRTH 287
PF C C + F+RS++L +H + H
Sbjct: 65 PFQCQK--CDRAFSRSDHLALHMKRH 88
Score = 48.7 bits (117), Expect = 4e-08
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
T C + CGK + +S +LK H RTHT
Sbjct: 2 RTATHT--CDYAGCGKTYTKSSHLKAHLRTHT 31
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 70.8 bits (174), Expect = 2e-16
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKPF C +P CG F+RS+ L H+R+H+
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS 38
Score = 40.7 bits (96), Expect = 1e-05
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
AC W GC G F +L H R H+G KP
Sbjct: 13 FACTWPGC---GWRFSRSDELSRHRRSHSGVKPSGP 45
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 73.0 bits (180), Expect = 7e-16
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 202 TCGKMFNNMHEIVTHL---TVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
C F + H + C C G+ FK +L H HT
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENC--------GKAFKKHNQLKVHQFSHT 130
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ P+ CP C K F+ LK H++ H
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Score = 72.6 bits (179), Expect = 1e-15
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 203 CGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
CG +N ++ HL H G P C C + F + + L H HTGE
Sbjct: 20 CGAAYNKNWKLQAHLCK-HTGEKPFPCKEEGC--------EKGFTSLHHLTRHSLTHTGE 70
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
K F C C F N+K H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFH 98
Score = 70.3 bits (173), Expect = 8e-15
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 226 ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKR 285
C+ C G + +KL H+ HTGEKPFPC C K F +L H
Sbjct: 14 ICSFADC--------GAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL 65
Query: 286 THT 288
THT
Sbjct: 66 THT 68
Score = 63.8 bits (156), Expect = 2e-12
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 251 VNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ + K + C F CG + ++ L+ H HT
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHT 38
Score = 51.8 bits (125), Expect = 3e-08
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 18/92 (19%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGP--ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTG- 259
CGK F +++ H H EC C + F +L H +VH G
Sbjct: 112 CGKAFKKHNQLKVHQFS-HTQQLPYECPHEGC--------DKRFSLPSRLKRHEKVHAGY 162
Query: 260 --EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
+K C F GK + + LK H +
Sbjct: 163 PCKKDDSCSF--VGKTW--TLYLKHVAECHQD 190
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 69.5 bits (171), Expect = 4e-15
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
C + GC + + L H R HTGEKP+ C F C + F+RS+ LK H+R HT
Sbjct: 7 FMCAYPGC---NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Score = 66.8 bits (164), Expect = 3e-14
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 201 KTCGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
C K + + + H H G P +C C R F +L H R HT
Sbjct: 12 PGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDC--------ERRFSRSDQLKRHQRRHT 62
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G KPF C TC + F+RS++LK H RTHT
Sbjct: 63 GVKPFQCK--TCQRKFSRSDHLKTHTRTHT 90
Score = 66.4 bits (163), Expect = 4e-14
Identities = 24/51 (47%), Positives = 27/51 (52%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
C R F L H R HTGEKPF C +P+C K FARS+ L H H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 54.1 bits (131), Expect = 1e-09
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ ++PF C +P C K + + +L++H R HT
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT 32
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 66.8 bits (164), Expect = 1e-14
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
R F L HIR HTGEKPF C CG+ FARS+ K H+
Sbjct: 10 MRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERKRHRDIQHI 56
Score = 49.0 bits (118), Expect = 4e-08
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK---RTHT 288
C GR F + H + P ++ +++ +L+ +
Sbjct: 34 CDICGRKFARSDERKRHRDIQH-ILPILED--KVEELLSKNYHLENEVARLKKLV 85
Score = 43.3 bits (103), Expect = 4e-06
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
KPF C C + F+RS++L H RTHT
Sbjct: 2 KPFQCR--ICMRNFSRSDHLTTHIRTHT 27
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 65.0 bits (159), Expect = 5e-14
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+AC + C R F +L HIR+HTG+KPF C C + F+RS++L H RTHT
Sbjct: 20 YACPVESC---DRRFSRSDELTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHT 73
Score = 55.4 bits (134), Expect = 2e-10
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
V +P+ CP +C + F+RS+ L H R HT
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHT 45
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 64.4 bits (158), Expect = 1e-13
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
C R F L HIR HTGEKPF C CG+ FARS+ K H + H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHL 86
Score = 49.4 bits (119), Expect = 3e-08
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E+P+ CP +C + F++S +L H R HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHT 30
Score = 28.2 bits (64), Expect = 0.78
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEK 261
C GR F + H ++H +K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 62.9 bits (154), Expect = 5e-13
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G+ F+ Y L H H+GEKP+ CP CG F R + + H R+H
Sbjct: 14 GKIFRDVYHLNRHKLSHSGEKPYSCP--VCGLRFKRKDRMSYHVRSHD 59
Score = 53.6 bits (130), Expect = 1e-09
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGE--KPFPCPFPTCGKVFARSENLKIH-KRTHT 288
CP G FK K ++ H+R H G KP+ C +CGK F+R ++L H K+ H+
Sbjct: 38 CPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHS 90
Score = 51.0 bits (123), Expect = 8e-09
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+G C CGK+F +L HK +H+
Sbjct: 2 SSGSSGVACE--ICGKIFRDVYHLNRHKLSHS 31
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 62.4 bits (153), Expect = 6e-13
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G+ F K KL H+R HTG KP+ C TC A S +L H R H+
Sbjct: 15 GKCFSRKDKLKTHMRCHTGVKPYKCK--TCDYAAADSSSLNKHLRIHS 60
Score = 60.5 bits (148), Expect = 3e-12
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
L H+R+H+ E+PF C C S L +H R+HT
Sbjct: 43 DYAAADSSSLNKHLRIHSDERPFKCQ--ICPYASRNSSQLTVHLRSHT 88
Score = 50.9 bits (123), Expect = 9e-09
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
P C CGK F+R + LK H R HT
Sbjct: 3 SGSSGPHKCE--VCGKCFSRKDKLKTHMRCHT 32
Score = 36.2 bits (85), Expect = 0.001
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 19/70 (27%)
Query: 201 KTCGKMFNNMHEIVTHLTVEHVGG-----PECTTHACFWDGCPRNGRPFKAKYKLVNHIR 255
KTC + + HL + H C + +L H+R
Sbjct: 40 KTCDYAAADSSSLNKHLRI-HSDERPFKCQIC-------------PYASRNSSQLTVHLR 85
Query: 256 VHTGEKPFPC 265
HTG+
Sbjct: 86 SHTGDSGPSS 95
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 62.1 bits (152), Expect = 6e-13
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G+ FK L H+ +H+ +P+PC + CGK F + ++K H HT
Sbjct: 8 GKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHT 53
Score = 61.3 bits (150), Expect = 1e-12
Identities = 34/90 (37%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 201 KTCGKMFNNMHEIVTHLTVEHVGG-P-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
K CGK F + THL + H P C C G+ F K + H +HT
Sbjct: 5 KICGKSFKRSSTLSTHLLI-HSDTRPYPC--QYC--------GKRFHQKSDMKKHTFIHT 53
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
GEKP C CGK F++S NL H R HT
Sbjct: 54 GEKPHKC--QVCGKAFSQSSNLITHSRKHT 81
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 61.7 bits (151), Expect = 2e-12
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
GR F Y L+ H R HT E+P+ C C K F R ++L+ H+ H+
Sbjct: 24 GRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHS 69
Score = 60.9 bits (149), Expect = 3e-12
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ F+ + L +H +H+ EKPF C CGK F +S L +HK H
Sbjct: 52 HKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVHKTLHM 97
Score = 59.8 bits (146), Expect = 9e-12
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+K F C F CG+ F +S NL IH+RTHT
Sbjct: 5 SSGGRLPSKTKKEFICKF--CGRHFTKSYNLLIHERTHT 41
Score = 34.3 bits (80), Expect = 0.008
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F L H +H
Sbjct: 80 GKGFCQSRTLAVHKTLHMQTSSPTA 104
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 60.2 bits (147), Expect = 2e-12
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
C R F+ K L +H VHTGEKP+ C CG F R NLK H R H+
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCN--ICGAQFNRPANLKTHTRIHS 69
Score = 56.3 bits (137), Expect = 7e-11
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+H + +KP+ C C F NL HK HT
Sbjct: 5 HHHHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVHT 41
Score = 30.9 bits (71), Expect = 0.084
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 19/66 (28%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGG-----PECTTHACFWDGCPRNGRPFKAKYKLVNHIRVH 257
C F + +H TV H G C G F L H R+H
Sbjct: 23 CQASFRYKGNLASHKTV-HTGEKPYRCNIC-------------GAQFNRPANLKTHTRIH 68
Query: 258 TGEKPF 263
+GEKP+
Sbjct: 69 SGEKPY 74
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 59.8 bits (146), Expect = 4e-12
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 249 KLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ R H+GEKP+ C C F +S +K+H
Sbjct: 2 SSGSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKH 39
Score = 53.3 bits (129), Expect = 8e-10
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGE--KPFPCPFPTCGKVFARSENLKIHKRT-HT 288
C F + HI E F CP C V AR +L +H R H+
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHS 70
Score = 28.3 bits (64), Expect = 0.62
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIR-VHTGEKPF 263
CP K L H+R H+ P
Sbjct: 48 CPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 59.0 bits (144), Expect = 4e-12
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIH-KRTHT 288
C R F + L H R HT EKP+PC C + F R + L H ++ H+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHS 55
Score = 44.8 bits (107), Expect = 7e-07
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ F C C + FAR E+LK H R+HT
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSHT 26
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 58.3 bits (142), Expect = 9e-12
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 237 CPRNGRPFKAKYKLVNHIRV--HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
C R + H K +PCPF C K F R +N+ H + ++
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHKI 66
Score = 51.8 bits (125), Expect = 2e-09
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
GE + C C +V+ N H T
Sbjct: 3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSH 34
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 57.9 bits (141), Expect = 2e-11
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+K L H R+H ++PF C C + NL H +
Sbjct: 16 SYSCSSKAALRIHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKKFH 61
Score = 51.7 bits (125), Expect = 2e-09
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ P C C + L+IH+R H
Sbjct: 2 SSGSSGHPEKCS--ECSYSCSSKAALRIHERIHC 33
Score = 30.9 bits (71), Expect = 0.059
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCP 266
K L H++ G+ P
Sbjct: 44 SFDTKQPSNLSKHMKKFHGDMSGPSS 69
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 57.5 bits (140), Expect = 2e-11
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
C G+ F L H R HTGEKP+ C CGK F + +L H R HT
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHT 70
Score = 56.3 bits (137), Expect = 7e-11
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ + C CGK F+ S +L H+RTHT
Sbjct: 6 SGRSEWQQRERRRYKCD--ECGKSFSHSSDLSKHRRTHT 42
Score = 31.6 bits (73), Expect = 0.046
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPF 263
C G+ F + L+ H RVHTG P
Sbjct: 49 CDECGKAFIQRSHLIGHHRVHTGSGPS 75
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 60.5 bits (148), Expect = 3e-11
Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G+ F L H R HTGEKP+ CP CGK F+R +NL H+RTHT
Sbjct: 112 GKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHTHQRTHT 157
Score = 59.8 bits (146), Expect = 4e-11
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 244 FKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
V + GEKP+ CP CGK F+RS++L H+RTHT
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACP--ECGKSFSRSDHLAEHQRTHT 45
Score = 59.8 bits (146), Expect = 4e-11
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G+ F K L H R HTGEKP+ C P CGK F++ NL+ H+RTHT
Sbjct: 56 GKSFSDKKDLTRHQRTHTGEKPYKC--PECGKSFSQRANLRAHQRTHT 101
Score = 59.8 bits (146), Expect = 4e-11
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G+ F L H R HTGEKP+ CP CGK F+ ++L H+RTHT
Sbjct: 28 GKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKDLTRHQRTHT 73
Score = 59.4 bits (145), Expect = 5e-11
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G+ F + L H R HTGEKP+ C P CGK F+R + L +H+RTHT
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKC--PECGKSFSRRDALNVHQRTHT 185
Score = 30.5 bits (70), Expect = 0.37
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKP 262
G+ F + L H R HTG+K
Sbjct: 168 GKSFSRRDALNVHQRTHTGKKT 189
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 57.2 bits (139), Expect = 4e-11
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ R HTGEKP+ C C K F + + L +H + +
Sbjct: 3 SGSSGRTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYH 39
Score = 55.2 bits (134), Expect = 2e-10
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGE----KPFPCPFPTCGKVFARSENLKIHKRTHT 288
C + F+ K L H + + F C CGK F R + H
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS--KCGKTFTRRNTMARHADNCA 71
Score = 42.5 bits (101), Expect = 7e-06
Identities = 12/72 (16%), Positives = 18/72 (25%), Gaps = 7/72 (9%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
C K F + H + A F C + G+ F + + H G
Sbjct: 21 CDKTFRQKQLLDMHFKR-YHD--PNFVPAAF--VCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 263 FPCPFPTCGKVF 274
G
Sbjct: 76 VEG--ENSGPSS 85
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 57.9 bits (141), Expect = 5e-11
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKR---THT 288
CP + F +KY L H R HTGEKPF C P CGK + R ENL H+ +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNR 62
Score = 55.2 bits (134), Expect = 5e-10
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK-RTHT 288
C F+ + +L H+ HTGE P+ C +C + F + ++L+ H + H+
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSHMIKLHS 119
Score = 52.1 bits (126), Expect = 7e-09
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+G C PTC K F LK+H R HT
Sbjct: 2 SSGSSGVEC--PTCHKKFLSKYYLKVHNRKHT 31
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 56.3 bits (137), Expect = 5e-11
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
C G+ F LV H RVHTGEKP+ C CGK F+++ L H+R HT
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHT 66
Score = 54.4 bits (132), Expect = 3e-10
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+H+GEKP+ C CGK F+RS L H+R HT
Sbjct: 2 SSGSSGIHSGEKPYGC--VECGKAFSRSSILVQHQRVHT 38
Score = 32.4 bits (75), Expect = 0.022
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 203 CGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
CGK F+ +V H V H G P +C C G+ F L+NH R+HT
Sbjct: 20 CGKAFSRSSILVQHQRV-HTGEKPYKCLE-------C---GKAFSQNSGLINHQRIHTSG 68
Query: 261 KPF 263
Sbjct: 69 PSS 71
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 56.6 bits (137), Expect = 6e-11
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 241 GRPFKAKYKLVNHIRVHT---GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
G + K L H R H FPC F CGK F + +++ H+
Sbjct: 14 GFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKS 61
Score = 48.9 bits (117), Expect = 4e-08
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
+G C CG + +L H+R H E
Sbjct: 2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAE 32
Score = 25.4 bits (56), Expect = 6.2
Identities = 11/73 (15%), Positives = 17/73 (23%), Gaps = 7/73 (9%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
CG + H H C + C G+ F+ + H
Sbjct: 13 CGFTCRQKASLNWHQRK-HAETVAALRFPC--EFC---GKRFEKPDSVAAHRSKSHPALL 66
Query: 263 FPCPFPTCGKVFA 275
P + G
Sbjct: 67 -LAPQESSGPSSG 78
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 55.3 bits (134), Expect = 6e-11
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
+PF C + CGK F RS+ L+ HKRTHT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
Score = 33.7 bits (78), Expect = 0.003
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK 261
C W C G+ F +L H R HTGEK
Sbjct: 3 FMCTWSYC---GKRFTRSDELQRHKRTHTGEK 31
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 57.1 bits (139), Expect = 8e-11
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 203 CGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
CGK F + + H+++ H+G P C C G+ FK K+ LV H+++HTG
Sbjct: 15 CGKSFTHKSQRDRHMSM-HLGLRPYGCG--VC--------GKKFKMKHHLVGHMKIHTGI 63
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
KP+ C C K F ++ H+ +
Sbjct: 64 KPYEC--NICAKRFMWRDSF--HRHVTS 87
Score = 53.2 bits (129), Expect = 2e-09
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+G+K +PC CGK F H H
Sbjct: 3 SGSSGDKLYPC---QCGKSFTHKSQRDRHMSMHL 33
Score = 41.3 bits (98), Expect = 4e-05
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 17/82 (20%)
Query: 201 KTCGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
CGK F H +V H+ + H G P EC C + F + H V +
Sbjct: 41 GVCGKKFKMKHHLVGHMKI-HTGIKPYECNI-------C---AKRFMWRDSF--HRHVTS 87
Query: 259 GEKPFPCPFPTCGKVFARSENL 280
K + + +
Sbjct: 88 CTKSYEA--AKAEQNTTEASGP 107
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 1e-10
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ + EKP+ C CGK + R NL +H+R H
Sbjct: 2 SSGSSGSVEKPYKCE--DCGKGYNRRLNLDMHQRVHM 36
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ + + L H RVH GEK
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 54.4 bits (132), Expect = 2e-10
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
GEKP+PC CG F + LK H R HT
Sbjct: 2 SSGSSGGEKPYPCE--ICGTRFRHLQTLKSHLRIHT 35
Score = 32.5 bits (75), Expect = 0.009
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPF 263
C G F+ L +H+R+HTG P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 54.0 bits (131), Expect = 2e-10
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C C K F NL +H+RTHT
Sbjct: 3 SGSSGTGEKPYECN--ECQKAFNTKSNLMVHQRTHT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C + F K L+ H R HTGE
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 2e-10
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKPF C C K F NL +H+RTHT
Sbjct: 2 SSGSSGTGEKPFECS--ECQKAFNTKSNLIVHQRTHT 36
Score = 35.5 bits (83), Expect = 8e-04
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C + F K L+ H R HTGEKP
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-10
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKP+ C CGK F R L IH+++HT
Sbjct: 2 SSGSSGTGEKPYKCS--DCGKAFTRKSGLHIHQQSHT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F K L H + HTGE+
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-10
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKPF C CGK F L H HT
Sbjct: 2 SSGSSGTGEKPFKCD--ICGKSFCGRSRLNRHSMVHT 36
Score = 33.6 bits (78), Expect = 0.004
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F + +L H VHT EKP
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-10
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEK + C CGK F+R+ L H+R H+
Sbjct: 2 SSGSSGTGEKLYNCK--ECGKSFSRAPCLLKHERLHS 36
Score = 35.6 bits (83), Expect = 8e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F L+ H R+H+GEKP
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-10
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK + NL +H++ HT
Sbjct: 3 SGSSGTGEKPYKCE--KCGKGYNSKFNLDMHQKVHT 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C + G+ + +K+ L H +VHTGE+P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-10
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGE PF C CGKVF NL IH++ HT
Sbjct: 2 SSGSSGTGENPFICS--ECGKVFTHKTNLIIHQKIHT 36
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F K L+ H ++HTGE+P
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 53.3 bits (129), Expect = 4e-10
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKPF C CGK F+R L +H + HT
Sbjct: 2 SSGSSGTGEKPFKCV--ECGKGFSRRSALNVHHKLHT 36
Score = 33.6 bits (78), Expect = 0.004
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F + L H ++HTGEKP
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 53.3 bits (129), Expect = 4e-10
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ +GEKPF C CGK F + H+R+H+
Sbjct: 2 SSGSSGSGEKPFKCE--ECGKGFYTNSQCYSHQRSHS 36
Score = 36.4 bits (85), Expect = 5e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCG 271
C G+ F + +H R H+GEKP + G
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGP---SSG 46
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-10
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ +GEKP+ C CGK + R +L H+R HT
Sbjct: 2 SSGSSGSGEKPYKCV--ECGKGYKRRLDLDFHQRVHT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ +K + L H RVHTGEK
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.4 bits (129), Expect = 5e-10
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKPF C CG F+ S +L H R+H
Sbjct: 3 SGSSGTGEKPFQCK--ECGMNFSWSCSLFKHLRSHE 36
Score = 32.9 bits (76), Expect = 0.007
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G F L H+R H P
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 5e-10
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GE+P+ C CGK F R +L H + H
Sbjct: 3 SGSSGSGERPYGCN--ECGKNFGRHSHLIEHLKRHF 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
GC G+ F L+ H++ H EK
Sbjct: 14 GCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.9 bits (128), Expect = 5e-10
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TG KP+ C CGK F L IH RTHT
Sbjct: 2 SSGSSGTGMKPYVCN--ECGKAFRSKSYLIIHTRTHT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F++K L+ H R HTGE
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 52.9 bits (128), Expect = 6e-10
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKP+ C CGK F +L H HT
Sbjct: 2 SSGSSGTGEKPYKCE--ECGKGFICRRDLYTHHMVHT 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F + L H VHTGEKP
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 6e-10
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKP+ C CGK F L+IH++ HT
Sbjct: 2 SSGSSGTGEKPYKCS--DCGKSFTWKSRLRIHQKCHT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F K +L H + HTGE+
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 52.9 bits (128), Expect = 6e-10
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TG++P+ C CGK F +L H+R+HT
Sbjct: 3 SGSSGTGQRPYECI--ECGKAFKTKSSLICHRRSHT 36
Score = 36.0 bits (84), Expect = 6e-04
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ FK K L+ H R HTGEKP
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 6e-10
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ GEKP+ C CGK F+ L IH RTH+
Sbjct: 2 SSGSSGAGEKPYGCS--ECGKAFSSKSYLIIHMRTHS 36
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F +K L+ H+R H+GEKP
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 6e-10
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ +GEKPF C CGK F ++ L H+R HT
Sbjct: 2 SSGSSGSGEKPFKCE--ECGKRFTQNSQLHSHQRVHT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F +L +H RVHTGEKP
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 52.5 bits (127), Expect = 8e-10
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TG KP+ C C K F+ L +H+R+HT
Sbjct: 2 SSGSSGTGVKPYGCS--QCAKTFSLKSQLIVHQRSHT 36
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C + + F K +L+ H R HTG KP
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 8e-10
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
GEK + C CGK F++S +L+ H+R HT
Sbjct: 3 SGSSGMGEKCYKCD--VCGKEFSQSSHLQTHQRVHT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F L H RVHTGEKP
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 52.5 bits (127), Expect = 9e-10
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKPF C CGK F+ S L H+R HT
Sbjct: 3 SGSSGTGEKPFECA--ECGKSFSISSQLATHQRIHT 36
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F +L H R+HTGEKP
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 9e-10
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C C K F +L +H+R HT
Sbjct: 3 SGSSGTGEKPYKCD--VCHKSFRYGSSLTVHQRIHT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
+ F+ L H R+HTGEKP
Sbjct: 19 HKSFRYGSSLTVHQRIHTGEKPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 52.1 bits (126), Expect = 1e-09
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
GEKP+ C TCG F + +L+ H HT
Sbjct: 2 SSGSSGGEKPYKCE--TCGARFVQVAHLRAHVLIHT 35
Score = 29.8 bits (68), Expect = 0.087
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPF 263
C G F L H+ +HTG P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 1e-09
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK F +L IH+ TH+
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFRARSSLAIHQATHS 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F+A+ L H H+GEKP
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 1e-09
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGE P+ C CGK F+R L H+RTH
Sbjct: 3 SGSSGTGENPYECH--ECGKAFSRKYQLISHQRTHA 36
Score = 36.7 bits (86), Expect = 3e-04
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F KY+L++H R H GEKP
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 1e-09
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK F NL H+ HT
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFRAHSNLTTHQVIHT 36
Score = 33.6 bits (78), Expect = 0.004
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F+A L H +HTGEKP
Sbjct: 19 GKAFRAHSNLTTHQVIHTGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 1e-09
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK F L+ H+R HT
Sbjct: 3 SGSSGTGEKPYNCE--ECGKAFIHDSQLQEHQRIHT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F +L H R+HTGEKP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 51.6 bits (124), Expect = 1e-09
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
R TG KPF CP C + F+RS++L +H++ H V
Sbjct: 2 STRGSTGIKPFQCP--DCDRSFSRSDHLALHRKRHMLV 37
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 1e-09
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEKP+ C CGK F R +L H+R HT
Sbjct: 3 SGSSGSGEKPYKCS--ECGKAFHRHTHLNEHRRIHT 36
Score = 32.9 bits (76), Expect = 0.009
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F L H R+HTG +P
Sbjct: 19 GKAFHRHTHLNEHRRIHTGYRPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 51.8 bits (125), Expect = 1e-09
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ +GEKP+ C CGK F L +H+RTH
Sbjct: 2 SSGSSGSGEKPYECN--ECGKAFIWKSLLIVHERTHA 36
Score = 32.1 bits (74), Expect = 0.014
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F K L+ H R H G
Sbjct: 19 GKAFIWKSLLIVHERTHAGVSGPSS 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 2e-09
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEKP+ C CGK F++ L H+RTHT
Sbjct: 3 SGSSGSGEKPYGCN--ECGKTFSQKSILSAHQRTHT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F K L H R HTGEKP
Sbjct: 19 GKTFSQKSILSAHQRTHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 51.8 bits (125), Expect = 2e-09
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK F + L H+R H+
Sbjct: 3 SGSSGTGEKPYNCK--ECGKSFRWASCLLKHQRVHS 36
Score = 34.9 bits (81), Expect = 0.001
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F+ L+ H RVH+GEKP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 51.8 bits (125), Expect = 2e-09
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TG+KPF C CGK F NL H+R HT
Sbjct: 2 SSGSSGTGQKPFECT--HCGKSFRAKGNLVTHQRIHT 36
Score = 37.5 bits (88), Expect = 2e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F+AK LV H R+HTGEK P
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-09
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ +GEKP+ C CGKVF ++ +L H R HT
Sbjct: 2 SSGSSGSGEKPYKCN--ECGKVFTQNSHLTNHWRIHT 36
Score = 32.9 bits (76), Expect = 0.007
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F L NH R+HTGEKP
Sbjct: 19 GKVFTQNSHLTNHWRIHTGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-09
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK F+ ++L +H+R H+
Sbjct: 3 SGSSGTGEKPYECS--VCGKAFSHRQSLSVHQRIHS 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F + L H R+H+G+KP
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKP+ C CGK F + + H+R HT
Sbjct: 2 SSGSSGTGEKPYKCM--ECGKAFGDNSSCTQHQRLHT 36
Score = 33.7 bits (78), Expect = 0.004
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F H R+HTG++P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKP+ C CGK F NL H++ HT
Sbjct: 2 SSGSSGTGEKPYICA--ECGKAFTIRSNLIKHQKIHT 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F + L+ H ++HT +KP
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 51.4 bits (124), Expect = 2e-09
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
GEKP+ C CGK F++ +L +H R HT
Sbjct: 2 SSGSSGGEKPYRCD--QCGKAFSQKGSLIVHIRVHT 35
Score = 34.5 bits (80), Expect = 0.002
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPF 263
C + G+ F K L+ HIRVHTG P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKPF C CGK F+ L H+R HT
Sbjct: 3 SGSSGTGEKPFDCI--DCGKAFSDHIGLNQHRRIHT 36
Score = 33.3 bits (77), Expect = 0.005
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F L H R+HTGEKP
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEKP+ C CGK F S L H+R HT
Sbjct: 3 SGSSGSGEKPYVCD--YCGKAFGLSAELVRHQRIHT 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F +LV H R+HTGEKP
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKP+ C CGKVF + L H+R HT
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFRHNSYLSRHQRIHT 36
Score = 33.3 bits (77), Expect = 0.006
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F+ L H R+HTGEKP
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TG K F C CGK F R L +H++ HT
Sbjct: 2 SSGSSGTGGKHFECT--ECGKAFTRKSTLSMHQKIHT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F K L H ++HTGEKP
Sbjct: 19 GKAFTRKSTLSMHQKIHTGEKPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK F NL H++ HT
Sbjct: 3 SGSSGTGEKPYRCA--ECGKAFTDRSNLFTHQKIHT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F + L H ++HTGEKP
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEK + C CGKVF+R+ L H++ HT
Sbjct: 3 SGSSGTGEKRYKCN--ECGKVFSRNSQLSQHQKIHT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F +L H ++HTGEKP
Sbjct: 19 GKVFSRNSQLSQHQKIHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK F + +L H+R HT
Sbjct: 3 SGSSGTGEKPYICN--ECGKSFIQKSHLNRHRRIHT 36
Score = 33.3 bits (77), Expect = 0.006
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F K L H R+HTGEKP
Sbjct: 19 GKSFIQKSHLNRHRRIHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKP+ C CGK FA+ NL H+R HT
Sbjct: 2 SSGSSGTGEKPYRCG--ECGKAFAQKANLTQHQRIHT 36
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F K L H R+HTGEKP
Sbjct: 19 GKAFAQKANLTQHQRIHTGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 2e-09
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGE+ + C CGK FAR L +H+R HT
Sbjct: 3 SGSSGTGERHYECS--ECGKAFARKSTLIMHQRIHT 36
Score = 35.6 bits (83), Expect = 8e-04
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F K L+ H R+HTGEKP
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-09
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK F + L +H++ HT
Sbjct: 3 SGSSGTGEKPYECS--ICGKSFTKKSQLHVHQQIHT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F K +L H ++HTGEKP
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C C K F+ +L H+R H+
Sbjct: 3 SGSSGTGEKPYECD--VCRKAFSHHASLTQHQRVHS 36
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C + F L H RVH+GEKP
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEKPF C CGK F ++ +L H+R HT
Sbjct: 3 SGSSGSGEKPFQCE--ECGKRFTQNSHLHSHQRVHT 36
Score = 34.1 bits (79), Expect = 0.003
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F L +H RVHTGEKP
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK F + L +H+R HT
Sbjct: 3 SGSSGTGEKPYECS--DCGKSFIKKSQLHVHQRIHT 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F K +L H R+HTGE P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKP+ C CGK F+++ L H+R HT
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKAFSQTSKLARHQRIHT 36
Score = 33.6 bits (78), Expect = 0.005
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F KL H R+HTGEKP
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C C K F + +L H++THT
Sbjct: 3 SGSSGTGEKPYECK--VCSKAFTQKAHLAQHQKTHT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C + F K L H + HTGEKP
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G+K F C C K F +S +L +H+R HT
Sbjct: 3 SGSSGAGKKLFKCN--ECKKTFTQSSSLTVHQRIHT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
+ F L H R+HTGEKP
Sbjct: 19 KKTFTQSSSLTVHQRIHTGEKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
GEK + C C F+++ +L++H+ H
Sbjct: 3 SGSSGMGEKTWKCR--ECDMCFSQASSLRLHQNVHV 36
Score = 33.3 bits (77), Expect = 0.005
Identities = 10/29 (34%), Positives = 10/29 (34%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C F L H VH GEKP
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TG KP+ C CGK F+ +L H+ HT
Sbjct: 2 SSGSSGTGVKPYMCN--ECGKAFSVYSSLTTHQVIHT 36
Score = 33.6 bits (78), Expect = 0.004
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F L H +HTGEKP
Sbjct: 19 GKAFSVYSSLTTHQVIHTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ GE+ C CGK F ++ N H+R HT
Sbjct: 2 SSGSSGHGERGHRCS--DCGKFFLQASNFIQHRRIHT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F + H R+HTGEKP
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGE+P C CGK F +S +L H+R HT
Sbjct: 2 SSGSSGTGERPHKCN--ECGKSFIQSAHLIQHQRIHT 36
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F L+ H R+HTGEKP
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK F S +L H H+
Sbjct: 3 SGSSGTGEKPYKCQ--VCGKAFRVSSHLVQHHSVHS 36
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F+ LV H VH+GE+P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.9 bits (123), Expect = 3e-09
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKP+ C CGKVF ++ +L H+ HT
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLVRHRGIHT 36
Score = 32.5 bits (75), Expect = 0.011
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F LV H +HTGEKP
Sbjct: 19 GKVFTQNSHLVRHRGIHTGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGKVF ++ +L H+R HT
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLANHQRIHT 36
Score = 33.3 bits (77), Expect = 0.005
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F L NH R+HTG KP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ TGEKP+ C CGK F S +L H R HT
Sbjct: 2 SSGSSGTGEKPYSCN--VCGKAFVLSAHLNQHLRVHT 36
Score = 32.9 bits (76), Expect = 0.008
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F L H+RVHT E
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKPF C CGK + + +L H+R HT
Sbjct: 3 SGSSGTGEKPFKCG--ECGKSYNQRVHLTQHQRVHT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ + + L H RVHTGEKP
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEKPF C CGK F ++ +L H R HT
Sbjct: 3 SGSSGSGEKPFKCK--ECGKAFRQNIHLASHLRIHT 36
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F+ L +H+R+HTGEKP
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP C CGK F+ + L +H+R HT
Sbjct: 3 SGSSGTGEKPHECR--ECGKSFSFNSQLIVHQRIHT 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F +L+ H R+HTGE P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK F+++ +L H+R HT
Sbjct: 3 SGSSGTGEKPYECK--ECGKAFSQTTHLIQHQRVHT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F L+ H RVHTGEKP
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGE+P+ C CGK F NL H++ HT
Sbjct: 3 SGSSGTGERPYICT--VCGKAFTDRSNLIKHQKIHT 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F + L+ H ++HTGEKP
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 5e-09
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGKVF R+ +L H+ HT
Sbjct: 3 SGSSGTGEKPYKCH--ECGKVFRRNSHLARHQLIHT 36
Score = 32.4 bits (75), Expect = 0.012
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F+ L H +HTGEKP
Sbjct: 19 GKVFRRNSHLARHQLIHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 5e-09
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGE+ + C CGK F + L +H+R H
Sbjct: 3 SGSSGTGERHYECS--ECGKAFIQKSTLSMHQRIHR 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F K L H R+H GEKP
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 50.3 bits (121), Expect = 5e-09
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEK C CGK F L+IH+R H
Sbjct: 3 SGSSGSGEKSHTCD--ECGKNFCYISALRIHQRVHM 36
Score = 31.0 bits (71), Expect = 0.037
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F L H RVH GEK
Sbjct: 19 GKNFCYISALRIHQRVHMGEKCSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 5e-09
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
GEKP+ C CGK F+ S L H THT
Sbjct: 3 SGSSGEGEKPYQCS--ECGKSFSGSYRLTQHWITHT 36
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F Y+L H HT EKP
Sbjct: 19 GKSFSGSYRLTQHWITHTREKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 6e-09
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGKVF ++ +L H+R HT
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLARHRRVHT 36
Score = 32.5 bits (75), Expect = 0.012
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F L H RVHTG KP
Sbjct: 19 GKVFTQNSHLARHRRVHTGGKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.3 bits (121), Expect = 6e-09
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP C CGK F L +H+RTH
Sbjct: 3 SGSSGTGEKPCKCT--ECGKAFCWKSQLIMHQRTHV 36
Score = 34.5 bits (80), Expect = 0.002
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F K +L+ H R H +K
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 6e-09
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGKVF ++ +L H+ HT
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLARHRGIHT 36
Score = 32.1 bits (74), Expect = 0.014
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F L H +HTGEKP
Sbjct: 19 GKVFTQNSHLARHRGIHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 6e-09
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TG KP+ C CGK F+++ L H+R HT
Sbjct: 3 SGSSGTGGKPYQCN--ECGKAFSQTSKLARHQRVHT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F KL H RVHTGEKP
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 7e-09
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GE+PF C CGK F R +L H R H+
Sbjct: 3 SGSSGSGERPFKCN--ECGKGFGRRSHLAGHLRLHS 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F + L H+R+H+ EK
Sbjct: 19 GKGFGRRSHLAGHLRLHSREKSSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 7e-09
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGEKP+ C CGK F+ +L H+ HT
Sbjct: 3 SGSSGTGEKPYECN--QCGKAFSVRSSLTTHQAIHT 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C + G+ F + L H +HTG+KP
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 7e-09
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TG+KP+ C CGKVF ++ +L H+ HT
Sbjct: 3 SGSSGTGKKPYKCN--ECGKVFTQNSHLARHRGIHT 36
Score = 32.5 bits (75), Expect = 0.012
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F L H +HTGEKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 1e-08
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G P+ C C K F+ L +H+R HT
Sbjct: 3 SGSSGAGVNPYKCS--QCEKSFSGKLRLLVHQRMHT 36
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C + + F K +L+ H R+HT EKP
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
TGE P+ C CGKVF+R + L H++TH+
Sbjct: 3 SGSSGTGENPYECC--ECGKVFSRKDQLVSHQKTHS 36
Score = 34.0 bits (79), Expect = 0.003
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
G+ F K +LV+H + H+G+
Sbjct: 19 GKVFSRKDQLVSHQKTHSGQSGPSS 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEKPF C C K F+ L +H++TH
Sbjct: 3 SGSSGEKPFGCS--CCEKAFSSKSYLLVHQQTHA 34
Score = 36.7 bits (86), Expect = 3e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
GC + F +K L+ H + H EKP
Sbjct: 12 GCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
T K + C CGK F R +L H++ HT
Sbjct: 3 SGSSGTDSKSYNCN--ECGKAFTRIFHLTRHQKIHT 36
Score = 26.4 bits (59), Expect = 1.5
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F + L H ++HT +
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 3e-08
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+G+KP+ C C K F + +L HKR HT
Sbjct: 3 SGSSGSGKKPYECK--ECRKTFIQIGHLNQHKRVHT 36
Score = 33.7 bits (78), Expect = 0.004
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C + F L H RVHTGE+
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 47.9 bits (115), Expect = 3e-08
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GE P+ C CGK F R + L H+RTH
Sbjct: 3 SGSSGENPYECS--ECGKAFNRKDQLISHQRTHA 34
Score = 36.0 bits (84), Expect = 5e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C G+ F K +L++H R H GE
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 48.0 bits (115), Expect = 4e-08
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIH-KRTHT 288
+ + KP+ C +CGK F+R ++L H K+ HT
Sbjct: 2 SSGSSGSVGKPYICQ--SCGKGFSRPDHLNGHIKQVHT 37
Score = 39.9 bits (94), Expect = 3e-05
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 237 CPRNGRPFKAKYKLVNHI-RVHTGEKPFPCPFPTCGKVFA 275
C G+ F L HI +VHT E+P C +
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPS 52
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 47.5 bits (114), Expect = 5e-08
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ + K C CG+ F +L H+R HT
Sbjct: 2 SSGSSGSSTKSHQCH--ECGRGFTLKSHLNQHQRIHT 36
Score = 33.3 bits (77), Expect = 0.006
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPC 265
GR F K L H R+HTGEKP
Sbjct: 19 GRGFTLKSHLNQHQRIHTGEKPSGP 43
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 47.4 bits (113), Expect = 5e-08
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+K C CGKV+ ++ +L+ H R HT
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
Score = 31.9 bits (73), Expect = 0.015
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 229 THACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK 261
H C GC G+ + L H+R HTGE+
Sbjct: 8 QHICHIQGC---GKVYGKTSHLRAHLRWHTGER 37
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 46.4 bits (111), Expect = 1e-07
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKR-THT 288
+ TG+KP+ C CGK F ++ +L H R HT
Sbjct: 2 SSGSSGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHT 37
Score = 29.8 bits (68), Expect = 0.084
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIR-VHTGEKPFPCP 266
C G+ F L+ H R HTGEKP
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 46.1 bits (110), Expect = 1e-07
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
GE P+ C CGK F + +L +H+R+ +
Sbjct: 2 SSGSSGGETPYLCG--QCGKSFTQRGSLAVHQRSCS 35
Score = 32.6 bits (75), Expect = 0.009
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPF 263
C + G+ F + L H R + P
Sbjct: 14 CGQCGKSFTQRGSLAVHQRSCSQSGPS 40
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 45.9 bits (108), Expect = 2e-07
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
G K L HIR HT +P+ C C F NL H ++
Sbjct: 8 GIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKA 53
Score = 30.8 bits (69), Expect = 0.059
Identities = 11/59 (18%), Positives = 15/59 (25%), Gaps = 9/59 (15%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK 261
CG + H+ H C FK K L H++ K
Sbjct: 7 CGIRXKKPSMLKKHIRT-HTDVRPYHCTYC--------NFSFKTKGNLTKHMKSKAHSK 56
Score = 27.0 bits (59), Expect = 1.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 270 CGKVFARSENLKIHKRTHT 288
CG + LK H RTHT
Sbjct: 7 CGIRXKKPSMLKKHIRTHT 25
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 45.4 bits (108), Expect = 2e-07
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+GEKP+ C C + F+ + L H++ HT
Sbjct: 3 SGSSGEKPYSCA--ECKETFSDNNRLVQHQKMHT 34
Score = 29.2 bits (66), Expect = 0.15
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
C F +LV H ++HT +
Sbjct: 13 CAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 44.9 bits (106), Expect = 4e-07
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
+K F C FP C K F R N++ H +TH E
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 26.4 bits (58), Expect = 1.6
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 220 EHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK 261
++V T C + GC + FK +Y + +HI+ H ++
Sbjct: 9 KYVKEMPDKTFECLFPGC---TKTFKRRYNIRSHIQTHLEDR 47
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 44.5 bits (106), Expect = 5e-07
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+G++ + C CGK F + +L +H+R HT
Sbjct: 3 SGSSGQRVYECQ--ECGKSFRQKGSLTLHERIHT 34
Score = 32.5 bits (75), Expect = 0.009
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPF 263
C G+ F+ K L H R+HTG P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 42.7 bits (100), Expect = 2e-06
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
++P+ C P C K F R+ +L HK++H E
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 41.5 bits (98), Expect = 5e-06
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ F C C + FAR E+LK H R+HT
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHT 26
Score = 27.3 bits (61), Expect = 0.52
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEK 261
C R F + L H R HT EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 41.0 bits (96), Expect = 9e-06
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ GE PF C C +VF + L H+RTH
Sbjct: 2 SSGSSGAGENPFKCS--KCDRVFTQRNYLVQHERTHA 36
Score = 27.1 bits (60), Expect = 0.75
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKP 262
C + R F + LV H R H +
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSG 40
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 40.0 bits (93), Expect = 3e-05
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 188 DMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTH---ACFWDGCPRNGRPF 244
D+ C W + C + +++ ++ HL +HV AC W+ C G
Sbjct: 1 DLKCKWKE-------CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDT 53
Query: 245 KAKYKLVNHIR 255
+ +VNHI
Sbjct: 54 AS---IVNHIN 61
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 38.5 bits (89), Expect = 2e-04
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK 284
++H G++ C CG +F R L K
Sbjct: 6 SGKRQKIHLGDRSQKC--SKCGIIFIRRSTLSRRK 38
Score = 26.2 bits (57), Expect = 4.1
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPF 263
C + + + L +G+K
Sbjct: 42 CEKCRKDSCQEAALNKDEGNESGKKTS 68
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 39.5 bits (91), Expect = 2e-04
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
CP PF + L HIR E CP C K F +++ H
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYT--EHTKVCPV--CKKEFTSTDSALDHVCKK 123
Score = 32.2 bits (72), Expect = 0.073
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
+ + F CP C F+ S +LK H R
Sbjct: 62 YLYRLLASKAISQFVCP--LCLMPFSSSVSLKQHIRYTEH 99
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 36.8 bits (85), Expect = 3e-04
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCG 271
C G+ F+ Y L H H+GEKP+ P+ G
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSG-PSSG 48
Score = 36.5 bits (84), Expect = 4e-04
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
K C CGK+F +L HK +H+
Sbjct: 5 SSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHS 36
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 37.4 bits (86), Expect = 0.001
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
+ + TG F C C + L +H
Sbjct: 10 YGSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGH 44
Score = 35.5 bits (81), Expect = 0.004
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
C ++ + E+ H+ + H + R +P K L+ +K
Sbjct: 25 CSAAYDTLVELTVHMNETGHYRDDN--HETDNNNPKRWSKPRKRS--LLEMEGKEDAQKV 80
Query: 263 FPCPFPTCGKVFARSENLKIH--KRTHTE 289
C + CG F ++L +H K H +
Sbjct: 81 LKCMY--CGHSFESLQDLSVHMIKTKHYQ 107
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 33.1 bits (75), Expect = 0.005
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+KPF C P CG+ F ++L +HK H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.4 bits (70), Expect = 0.026
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
+GEKP+ CP CG F R + + H R+H
Sbjct: 5 SSGEKPYSCP--VCGLRFKRKDRMSYHVRSH 33
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.043
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
EK F C C K F+ S+ L H+R HT
Sbjct: 7 GQKEKCFKCN--KCEKTFSCSKYLTQHERIHT 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.052
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 28/94 (29%)
Query: 144 YHHHHREPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTC 203
+HHHH +MD T Q + + C +
Sbjct: 1 HHHHH------HMDFE-----TGEHQY--QYKDILSVFEDAFVDNFDCKDVQ-------- 39
Query: 204 GKMFNNMHEIVTHLTVEHV---GGPECTTHACFW 234
+ I++ ++H+ T FW
Sbjct: 40 ----DMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Score = 31.7 bits (71), Expect = 0.33
Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 38/121 (31%)
Query: 80 NNHYNSYPMPHMQTGYSRDYLLRRDDYANNIHH---------PPPVPPPPVQPPGNDM-F 129
++ +P + + ++ ++ H P + PP D F
Sbjct: 420 QPKESTISIPSIY----LELKVKLENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 130 FHHPVDPLSQHSMLYHHHHREPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDM 189
+ H + H H R ++ + L+ FR++ Q I+ D
Sbjct: 474 YSH----IGHHLKNIEHPERMTLFRMVFLD------------------FRFLEQKIRHDS 511
Query: 190 T 190
T
Sbjct: 512 T 512
Score = 27.9 bits (61), Expect = 5.5
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 78 HHNNHYNSYPMPHMQTGYSRDYL 100
HH++H+ + Q Y +D L
Sbjct: 1 HHHHHHMDFETGEHQYQY-KDIL 22
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 30.3 bits (68), Expect = 0.059
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 263 FPCPFPTCGKVFARSENLKIHKRTH 287
F CP C K F RS++L H H
Sbjct: 3 FACP--ECPKRFMRSDHLSKHITLH 25
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 32.9 bits (74), Expect = 0.12
Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 5/136 (3%)
Query: 3 SPATMGIKMTPPPTTSPHNHMMPLPGNNIKMINTFMETPTLASMGIKMSPPPPTSPHQLQ 62
+ + G PP P + ++ ++ T + + + P P+
Sbjct: 38 AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97
Query: 63 SGGNHMMPLGGNNENHHNNHYNSYPMPHMQTGY-----SRDYLLRRDDYANNIHHPPPVP 117
+ + +Y P G ++ Y + +P
Sbjct: 98 QPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLP 157
Query: 118 PPPVQPPGNDMFFHHP 133
PPP+ P M
Sbjct: 158 PPPLVIPPERMLVPSE 173
Score = 31.7 bits (71), Expect = 0.32
Identities = 17/167 (10%), Positives = 33/167 (19%), Gaps = 9/167 (5%)
Query: 11 MTPPPTTSPHNHMMPLPGNNIKMINTFMETPTLASMGIKMSPPPPTSPHQLQSGGNHMMP 70
+ P P + +M ++P Q+ M
Sbjct: 23 LQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMND 82
Query: 71 LGGNNENHHNNHYNSYPMPHMQTGYSRDYLLRRD---------DYANNIHHPPPVPPPPV 121
+ +N + + P +Q G + P P
Sbjct: 83 MHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPID 142
Query: 122 QPPGNDMFFHHPVDPLSQHSMLYHHHHREPVYSNMDLNAAYPSTNAM 168
P + SN + + NA+
Sbjct: 143 LLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAV 189
Score = 27.1 bits (59), Expect = 7.7
Identities = 16/170 (9%), Positives = 37/170 (21%), Gaps = 16/170 (9%)
Query: 51 SPPPPTSPHQLQSGGNHMMPLGGNNENHHNNHYNSYPMPHMQTGYSRDYLLRRDDYANNI 110
PP S G MP G + + + + A
Sbjct: 29 FMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQID---------QATTS 79
Query: 111 HHPPPVPPPPVQPPGNDMFFHHPVDPLSQHSMLYHHHH-------REPVYSNMDLNAAYP 163
+ + P+ P M PV + + NM
Sbjct: 80 MNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLY 139
Query: 164 STNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEI 213
+ + P+ + + + + + + ++ +
Sbjct: 140 PIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAV 189
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.13
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEK 261
C + FK K+ L H+R+HT EK
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.9 bits (61), Expect = 0.45
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
K F C + C KVF +L+ H R HT
Sbjct: 8 KIFTCEY--CNKVFKFKHSLQAHLRIHT 33
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 28.7 bits (64), Expect = 0.16
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 263 FPCPFPTCGKVFARSENLKIHKRTH 287
F CP C K F RS++L +H H
Sbjct: 3 FACP--ECPKRFMRSDHLTLHILLH 25
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 26.7 bits (58), Expect = 0.91
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 264 PCPFPTCGKVFARSENLKIHKRTHT 288
PC CGK F ++ +L H R HT
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHT 26
Score = 25.9 bits (56), Expect = 1.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEK 261
C G+ F L+ H+R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 30.2 bits (67), Expect = 1.0
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 4/80 (5%)
Query: 208 NNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPF 267
NN +E+ V++ GG + V + + C
Sbjct: 128 NNANELSRSGNVDNEGGSNQKPMSTR--IAEATSAIVSKHPARVGLPPTASSGHGYQCHV 185
Query: 268 PTCGKVFARSENLKIHKRTH 287
C V +L H +H
Sbjct: 186 --CSAVLFSPLDLDAHVASH 203
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 25.9 bits (56), Expect = 2.1
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
+G++PF C C F N H + HT+
Sbjct: 2 SSGKRPFVC--RICLSAFTTKANCARHLKVHTD 32
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus
thermophilus} SCOP: e.60.1.1
Length = 408
Score = 28.6 bits (63), Expect = 2.4
Identities = 19/148 (12%), Positives = 36/148 (24%), Gaps = 12/148 (8%)
Query: 125 GNDMFFHHPVDPLSQHSMLYHHHH-REPVYSNMDLN------AAYPSTNAMQSAGTHGAF 177
G+D + P + +P + + ++
Sbjct: 103 GSDPKALEGLPPEKVGRAQKANARAYKPALEAITEFVTNWTIVPFAHPGWARAVFPGLPE 162
Query: 178 FRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVE-----HVGGPECTTHAC 232
+R+ + D P +HE V +L H GP
Sbjct: 163 EEAVRRLWEAIFQATRADQEDPIAAWEAHNRALHEKVAYLNARRFHALHFKGPGTDLVVG 222
Query: 233 FWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
+G G K + + + T E
Sbjct: 223 LAEGHLWQGGATATKGGRLCNPNLPTEE 250
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 25.6 bits (56), Expect = 2.5
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRT 286
K + C C + F R + L H +
Sbjct: 1 KAYACGL--CNRAFTRRDLLIRHAQK 24
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 3.5
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ KP+ CP C A NL +H R HT
Sbjct: 5 SSGKPYKCP--QCSYASAIKANLNVHLRKHT 33
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 27.8 bits (61), Expect = 3.9
Identities = 8/36 (22%), Positives = 9/36 (25%)
Query: 113 PPPVPPPPVQPPGNDMFFHHPVDPLSQHSMLYHHHH 148
P P P P +HHHH
Sbjct: 194 RFPGAVPGGDRFPGPAGPGGPPPPFPAGQTHHHHHH 229
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 25.0 bits (54), Expect = 4.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHT 288
+ C F CG+ F L HK+ HT
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHT 28
Score = 24.2 bits (52), Expect = 8.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTG 259
+ C ++ C GR F + KL H ++HTG
Sbjct: 3 YVCHFENC---GRSFNDRRKLNRHKKIHTG 29
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 26.8 bits (58), Expect = 4.4
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 244 FKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
+ + +H R+ CP+ C F E + H+
Sbjct: 26 LSSLLEQGSHERLC--RNAAVCPY--CSLRFFSPELKQEHESKCEY 67
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 27.6 bits (62), Expect = 4.8
Identities = 9/34 (26%), Positives = 10/34 (29%)
Query: 15 PTTSPHNHMMPLPGNNIKMINTFMETPTLASMGI 48
P M E P +ASMGI
Sbjct: 199 PQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGI 232
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 24.7 bits (53), Expect = 6.1
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 263 FPCPFPTCGKVFARSENLKIHKRT 286
F CP C K F RS+ L H +T
Sbjct: 3 FACP--ACPKRFMRSDALSKHIKT 24
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 27.2 bits (59), Expect = 6.5
Identities = 8/71 (11%), Positives = 18/71 (25%)
Query: 78 HHNNHYNSYPMPHMQTGYSRDYLLRRDDYANNIHHPPPVPPPPVQPPGNDMFFHHPVDPL 137
H++ + P + + L DD P ++ L
Sbjct: 122 GHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKENQRLPNPDNSEPALCDPNL 181
Query: 138 SQHSMLYHHHH 148
S ++ +
Sbjct: 182 SFDAVTTVGNK 192
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 24.0 bits (51), Expect = 7.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTG 259
C G+ F K+++ H RVHTG
Sbjct: 6 CSVCGKRFSLKHQMETHYRVHTG 28
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 23.9 bits (51), Expect = 8.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
KP+ C C + FA L+ H R HT
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHT 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.456
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,875,410
Number of extensions: 292440
Number of successful extensions: 1741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1469
Number of HSP's successfully gapped: 377
Length of query: 290
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 197
Effective length of database: 4,105,140
Effective search space: 808712580
Effective search space used: 808712580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)