RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16225
(290 letters)
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 33
Score = 67.4 bits (165), Expect = 7e-16
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
C W GC R RPFKA+Y LV H+R HTGE
Sbjct: 3 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 33
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 54.3 bits (131), Expect = 6e-11
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
++P+ C P C K F R+ +L HK++H E
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 27.7 bits (62), Expect = 0.14
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
++C GC + F + L+ H + H +
Sbjct: 4 YSCDHPGC---DKAFVRNHDLIRHKKSHQEK 31
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 50.4 bits (121), Expect = 1e-09
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
+P+ CPF C K FA+S NLK H TH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 25.8 bits (57), Expect = 0.64
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
+ C +DGC + F L +HI H
Sbjct: 3 YVCPFDGC---NKKFAQSTNLKSHILTHA 28
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 50.7 bits (122), Expect = 1e-09
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 256 VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+H+GEKP+ C CGK F+RS L H+R HT
Sbjct: 1 IHSGEKPYGCVE--CGKAFSRSSILVQHQRVHT 31
Score = 27.6 bits (62), Expect = 0.15
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGE 260
C G+ F LV H RVHTGE
Sbjct: 10 CVECGKAFSRSSILVQHQRVHTGE 33
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 49.2 bits (118), Expect = 3e-09
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHK-RTHTE 289
R H+GEKP+ C C F +S +K+H + HTE
Sbjct: 1 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTE 34
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 48.9 bits (117), Expect = 4e-09
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
R HTGEKP+ C C K F + + L +H + + +
Sbjct: 1 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHD 33
Score = 23.9 bits (52), Expect = 3.3
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEK 261
C + F+ K L H + +
Sbjct: 11 CSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 48.6 bits (116), Expect = 6e-09
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
R TG KPF CP C + F+RS++L +H++ H V
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRHMLV 37
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 48.5 bits (116), Expect = 7e-09
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
+PF C + CGK F RS+ L+ HKRTHT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
Score = 32.7 bits (75), Expect = 0.003
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK 261
C W C G+ F +L H R HTGEK
Sbjct: 3 FMCTWSYC---GKRFTRSDELQRHKRTHTGEK 31
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 48.5 bits (116), Expect = 7e-09
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
KP C F C K ++R ENLK H R+HT
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHT 28
Score = 30.4 bits (69), Expect = 0.017
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
H C ++GC + + L H+R HTGE
Sbjct: 3 HKCTFEGC---RKSYSRLENLKTHLRSHTGE 30
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 48.1 bits (115), Expect = 7e-09
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
+P+ CP +C + F+RS +L H R HT
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHT 28
Score = 27.3 bits (61), Expect = 0.20
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTG 259
+AC + C R F L HIR+HTG
Sbjct: 3 YACPVESC---DRRFSRSADLTRHIRIHTG 29
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 47.4 bits (113), Expect = 2e-08
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
KPF C F CGK F+ NL+ H R HT
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT 28
Score = 28.1 bits (63), Expect = 0.10
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
C ++GC G+ F + L H+R+HTG+
Sbjct: 3 FQCTFEGC---GKRFSLDFNLRTHVRIHTGD 30
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 45.2 bits (107), Expect = 1e-07
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ + C CGK F+ S +L H+RTHT
Sbjct: 3 SEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRTHT 36
Score = 26.7 bits (59), Expect = 0.39
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGE 260
C G+ F L H R HTGE
Sbjct: 15 CDECGKSFSHSSDLSKHRRTHTGE 38
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 44.4 bits (105), Expect = 2e-07
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
+G++PF C C F N H + HT+
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHTD 32
Score = 23.2 bits (50), Expect = 7.6
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 241 GRPFKAKYKLVNHIRVHTGE 260
F K H++VHT
Sbjct: 14 LSAFTTKANCARHLKVHTDT 33
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 43.9 bits (104), Expect = 3e-07
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 229 THACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPF 267
+ +C C G+ F K L H+++H+ + + C F
Sbjct: 1 SFSCPEPAC---GKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 43.2 bits (102), Expect = 5e-07
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHT 288
F CP P CGK F ++LK H + H+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHS 27
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 42.6 bits (101), Expect = 7e-07
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+KPF C C + F+RS++L H RTHT
Sbjct: 1 QKPFQCR--ICMRNFSRSDHLTTHIRTHT 27
Score = 25.6 bits (57), Expect = 0.84
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTG 259
C R F L HIR HTG
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTG 28
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 42.2 bits (99), Expect = 1e-06
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 247 KYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ + +++ +K F C FP C K F R N++ H +TH
Sbjct: 4 RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL 44
Score = 27.2 bits (60), Expect = 0.28
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 233 FWDGCPRNGRPFKAKYKLVNHIRVHTGEK 261
F P + FK +Y + +HI+ H ++
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 41.8 bits (99), Expect = 1e-06
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
+ F C C + FAR E+LK H R+HT
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHT 26
Score = 31.1 bits (71), Expect = 0.008
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEK 261
C R F + L H R HT EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 40.1 bits (93), Expect = 9e-06
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
G+ F K + H+ +H G +P+ C CGK F +L H + H
Sbjct: 9 GKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53
Score = 32.3 bits (73), Expect = 0.006
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTH 287
+K +PC CGK F H H
Sbjct: 1 DKLYPC---QCGKSFTHKSQRDRHMSMH 25
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 39.2 bits (92), Expect = 1e-05
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
K F CP C K F RS++L H +TH
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKHIKTHQ 26
Score = 30.4 bits (69), Expect = 0.013
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEK 261
CP + F L HI+ H +K
Sbjct: 5 CPECPKRFMRSDHLSKHIKTHQNKK 29
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 38.1 bits (89), Expect = 3e-05
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 258 TGEKPFPCPFPTCGKVFARSENLKIH-KRTHT 288
+ KP+ C CGK F+R ++L H K+ HT
Sbjct: 1 SVGKPYICQS--CGKGFSRPDHLNGHIKQVHT 30
Score = 34.6 bits (80), Expect = 6e-04
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIR-VHTGEKPFPC 265
C G+ F L HI+ VHT E+P C
Sbjct: 8 CQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 37.2 bits (87), Expect = 6e-05
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
KP+ C CGK F+++ L H+R HT
Sbjct: 1 KPYKCL--ECGKAFSQNSGLINHQRIHT 26
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 34.8 bits (80), Expect = 4e-04
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTH 287
EKPF C CG+ FARS+ K H + H
Sbjct: 1 EKPFACDI--CGRKFARSDERKRHTKIH 26
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 34.5 bits (79), Expect = 7e-04
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
+KPF C P CG+ F ++L +HK H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 29.3 bits (65), Expect = 0.040
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHTE 289
+ C F CGK F + LK+H+ +HT+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ 28
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 29.3 bits (65), Expect = 0.042
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 264 PCPFPTCGKVFARSENLKIHKRTHT 288
P CGK F+R + LK H R HT
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHT 25
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 29.4 bits (66), Expect = 0.20
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIR--VHTGE 260
C ++F + E +H +EH ++G F KL+N IR T E
Sbjct: 21 CDRLFASAEETFSHCKLEH--------QFNIDSMVHKHGLEFYGYIKLINFIRLKNPTVE 72
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 27.0 bits (59), Expect = 0.26
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEK 261
CP + F +KY L H R HTGEK
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGEK 27
Score = 25.0 bits (54), Expect = 1.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 268 PTCGKVFARSENLKIHKRTHT 288
PTC K F LK+H R HT
Sbjct: 4 PTCHKKFLSKYYLKVHNRKHT 24
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 31
Score = 26.8 bits (59), Expect = 0.30
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 261 KPFPCPFPTCGKVFAR-SENLKIHKRTHT 288
KP+ C C K F+ S+ K RTH+
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS 29
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 26.6 bits (58), Expect = 0.36
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTH 287
+ P+ CP C K F+ LK H++ H
Sbjct: 1 QLPYECPHEGCDKRFSLPSRLKRHEKVH 28
>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 262
Score = 29.6 bits (66), Expect = 0.36
Identities = 17/108 (15%), Positives = 27/108 (25%), Gaps = 16/108 (14%)
Query: 114 PPVPPPPVQPPGNDMFFH----HPVDPLSQHSMLYHHHHREPVYSNMDLNAAYP-----S 164
P PP ++ H V L+ Y H V + A
Sbjct: 52 PGFVPPTAAGHAGELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVL 111
Query: 165 TNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHE 212
TNA + G I ++ G F ++ +
Sbjct: 112 TNA--AGGLRADLQVGQPVLISD-----HLNLTARSPLVGGEFVDLTD 152
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 26.2 bits (57), Expect = 0.46
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
KPFPC C K F +L H THT
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT 28
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 26.2 bits (57), Expect = 0.50
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTH 287
EKP+ CP CG F R + + H R+H
Sbjct: 1 EKPYSCP--VCGLRFKRKDRMSYHVRSH 26
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 26.2 bits (57), Expect = 0.54
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEKPF 263
C G+ F+ Y L H H+GEKP+
Sbjct: 7 ACEICGKIFRDVYHLNRHKLSHSGEKPY 34
Score = 23.1 bits (49), Expect = 8.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 269 TCGKVFARSENLKIHKRTHT 288
CGK+F +L HK +H+
Sbjct: 10 ICGKIFRDVYHLNRHKLSHS 29
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 26.2 bits (57), Expect = 0.56
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 263 FPCPFPTCGKVFARSENLKIHKR 285
PC FP CG++F+ + L HK+
Sbjct: 1 MPCDFPGCGRIFSNRQYLNHHKK 23
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 25.7 bits (56), Expect = 0.82
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
K + C F CG + ++ L+ H HT
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHT 29
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.4 bits (55), Expect = 0.95
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 270 CGKVFARSENLKIHKRTHT 288
CGK F S LK H+ HT
Sbjct: 8 CGKAFVESSKLKRHQLVHT 26
Score = 24.6 bits (53), Expect = 1.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGE 260
C G+ F KL H VHTGE
Sbjct: 5 CAECGKAFVESSKLKRHQLVHTGE 28
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 25.2 bits (55), Expect = 1.1
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEK 261
C G K L HIR HT +
Sbjct: 4 CEECGIRAKKPSMLKKHIRTHTDVR 28
>d1pb5a_ g.65.1.1 (A:) Neurogenic locus notch homolog protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.9 bits (54), Expect = 1.5
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 226 ECTTHACFWDG 236
+C HAC WDG
Sbjct: 21 QCNNHACGWDG 31
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 24.6 bits (53), Expect = 1.9
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 262 PFPCPFPTCGKVFARSENLKIHK 284
PF CP CGK + R ENL H+
Sbjct: 1 PFECP--KCGKCYFRKENLLEHE 21
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 24.7 bits (54), Expect = 2.2
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTH 287
+ + C F C + F ++ L H H
Sbjct: 4 RSYTCSF--CKREFRSAQALGGHMNVH 28
>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
Length = 484
Score = 27.6 bits (61), Expect = 2.3
Identities = 21/123 (17%), Positives = 34/123 (27%), Gaps = 17/123 (13%)
Query: 35 NTFMETPTLASM------GIKMSPPPPTSPHQLQSGGNHMMPLGGNNENHHNNHYNSYPM 88
N F ET +A GI+ S M LG N + N +
Sbjct: 298 NFFQETEQVAMAPANLVPGIEPSEDRLLQGRVFSYADTQMYRLGA---NGLSLPVNQPKV 354
Query: 89 PHMQTGYSRDYLLRRDDYANNIH-HPPPVPPPPVQPPGNDMFFHHPVDPLSQHSMLYHHH 147
++D L + ++ P + P P + PLS +
Sbjct: 355 AVNN--GNQDGALNTGHTTSGVNYEPSRLEPRPADDK-----ARYSELPLSGTTQQAKIT 407
Query: 148 HRE 150
+
Sbjct: 408 REQ 410
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase
LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 170
Score = 26.5 bits (58), Expect = 2.5
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 5 ATMGIKMTPPPTTSPHNHMMPLPGNNIKMINTFMETPTLASMGIKMSPPPPTSPHQLQSG 64
A M M P + H+ + N ++++ + + + ++ G
Sbjct: 58 AGMNDMMRPAMYEAYHHIINCKVKNEKEVVSIAGGLCESSDVFGRDRELDK-----VEVG 112
Query: 65 GNHMMPLGGNNENHHNNHYNSYPMP 89
+ G N+YN+ P
Sbjct: 113 DVLAIFDVGAYGISMANNYNARGRP 137
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 23.9 bits (51), Expect = 3.0
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
E+ F C C + F R L++H +HT
Sbjct: 2 EQVFTCSV--CQETFRRRMELRLHMVSHT 28
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 23.3 bits (50), Expect = 4.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTH 287
KP+ C P C K + +L+ H +T
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTV 27
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 23.8 bits (51), Expect = 7.2
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 263 FPCPFPTCGKVFARSENLKIHKRTH 287
PC CGKVF + L+ H+ H
Sbjct: 7 LPCG--LCGKVFTDANRLRQHEAQH 29
>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 32
Score = 22.9 bits (49), Expect = 9.0
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 188 DMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGG 224
+ C W C + F++ ++V H+ EH+ G
Sbjct: 1 ETDCRW-------DGCSQEFDSQEQLVHHINSEHIHG 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.456
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,214,641
Number of extensions: 59431
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 107
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)