BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1623
         (522 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
          Plasminogen
 pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
          Plasminogen
 pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
          Plasminogen
 pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
          Length = 791

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 21 PISNNIGVRMRMRRQFIKKSTTAASLAACERECAESRDFICRSFNYRA 68
          P+ + +  +        KK   A S+  C  +C E  +F CR+F Y +
Sbjct: 2  PLDDYVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQYHS 49


>pdb|3FJV|A Chain A, Crystal Structure Of Novel Protein Of Unknown Function
           (yp_111841.1) From Burkholderia Pseudomallei K96243 At
           1.90 A Resolution
 pdb|3FJV|B Chain B, Crystal Structure Of Novel Protein Of Unknown Function
           (yp_111841.1) From Burkholderia Pseudomallei K96243 At
           1.90 A Resolution
          Length = 194

 Score = 29.3 bits (64), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 406 SLLCVDAYCTGHSGRNEPSLGRKRREIASVGDSEGVVVNSEGKTKNGTDDEEQVREMIEV 465
           SLL ++AY       +   +  K+R   S+G+   ++   E   +       Q+ E + +
Sbjct: 8   SLLTLEAYAKVRRQEHARVIAHKKRRAVSIGNHLRLLFEDETTIRY------QIHEXLHI 61

Query: 466 SVVFESRYEMPQLQTMQPAIPD 487
             +F+      +L    P +PD
Sbjct: 62  EKIFDEDGIQAELDAYLPLVPD 83


>pdb|1QQW|A Chain A, Crystal Structure Of Human Erythrocyte Catalase
 pdb|1QQW|B Chain B, Crystal Structure Of Human Erythrocyte Catalase
 pdb|1QQW|C Chain C, Crystal Structure Of Human Erythrocyte Catalase
 pdb|1QQW|D Chain D, Crystal Structure Of Human Erythrocyte Catalase
 pdb|1F4J|A Chain A, Structure Of Tetragonal Crystals Of Human Erythrocyte
           Catalase
 pdb|1F4J|B Chain B, Structure Of Tetragonal Crystals Of Human Erythrocyte
           Catalase
 pdb|1F4J|C Chain C, Structure Of Tetragonal Crystals Of Human Erythrocyte
           Catalase
 pdb|1F4J|D Chain D, Structure Of Tetragonal Crystals Of Human Erythrocyte
           Catalase
          Length = 527

 Score = 28.5 bits (62), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 95  YFEPTGDFDFYEKSASGRSGQECLDGKLPYVV--NQVCSEDGMEFTLRTPEGFLGRIYT 151
           YFE T D   Y K+       E +  K P  V  + V  E G   T+R P GF  + YT
Sbjct: 84  YFEVTHDITKYSKAKVF----EHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYT 138


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,707,206
Number of Sequences: 62578
Number of extensions: 682227
Number of successful extensions: 1158
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 12
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)