BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1623
         (522 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q03755|CUT1_CAEEL Cuticlin-1 OS=Caenorhabditis elegans GN=cut-1 PE=2 SV=2
          Length = 424

 Score = 36.6 bits (83), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 75/211 (35%), Gaps = 36/211 (17%)

Query: 130 CSEDGMEFTLRTPEGFLGRIYTYGYYDRCFYRGNGGTANVLRISGAQGYPDCGTQR---- 185
           C  + +     T   F G +Y  G YD+   R + G   V  I     +  C T R    
Sbjct: 33  CGPNSITVNFNTRNPFEGHVYVKGLYDQAGCRSDEGGRQVAGIE--LPFDSCNTARTRSL 90

Query: 186 --YGDTMTNIVVVQFSDYVQTSRDKRYNLTCLFRGPGEAVVT----SSYMTANSGSPIPI 239
              G  ++  VV+ F     T  D+ Y + C +    + V T    S   TA     +P+
Sbjct: 91  NPKGVFVSTTVVISFHPQFVTKVDRAYRIQCFYMESDKTVSTQIEVSDLTTAFQTQVVPM 150

Query: 240 EYLPAENSLSSRVRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNY------VTDIFATNV 293
                E           +  G P+     G P+ F    Q  Y+        TD F   V
Sbjct: 151 PVCKYE-----------ILDGGPS-----GQPIQFATIGQQVYHKWTCDSETTDTFCAVV 194

Query: 294 --IARDPYSGRSVQLIDRYGYWIIESTFNHL 322
                D  +G +VQ+++  G  + +   N+L
Sbjct: 195 HSCTVDDGNGDTVQILNEEGCALDKFLLNNL 225


>sp|Q01177|PLMN_RAT Plasminogen OS=Rattus norvegicus GN=Plg PE=2 SV=2
          Length = 812

 Score = 34.7 bits (78), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 36 FIKKSTTAASLAACERECAESRDFICRSFNYRA 68
            KK   A S+A C  +C    DFICRSF Y +
Sbjct: 36 LTKKQLAAGSIADCLAKCEGETDFICRSFQYHS 68


>sp|P0AFI6|PBP7_SHIFL D-alanyl-D-alanine endopeptidase OS=Shigella flexneri GN=pbpG PE=3
           SV=2
          Length = 310

 Score = 34.3 bits (77), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 7   LPQPKLLRTDFKHLPISNNIGVRMRMRRQFIKKSTTAASLAACERECAESRDFICRSFNY 66
           LP  + L+ D    P    +  R+R+  +  +K     +L + E   A S      + +Y
Sbjct: 82  LPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASL-----AHHY 136

Query: 67  RAVPYGGQRENCELSDRDARDLDMNNPSYFEPTG 100
                GG +   +  +  A+ L MNN  + EPTG
Sbjct: 137 P----GGYKAFIKAMNAKAKSLGMNNTRFVEPTG 166


>sp|P0AFI5|PBP7_ECOLI D-alanyl-D-alanine endopeptidase OS=Escherichia coli (strain K12)
           GN=pbpG PE=1 SV=2
          Length = 310

 Score = 34.3 bits (77), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 7   LPQPKLLRTDFKHLPISNNIGVRMRMRRQFIKKSTTAASLAACERECAESRDFICRSFNY 66
           LP  + L+ D    P    +  R+R+  +  +K     +L + E   A S      + +Y
Sbjct: 82  LPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASL-----AHHY 136

Query: 67  RAVPYGGQRENCELSDRDARDLDMNNPSYFEPTG 100
                GG +   +  +  A+ L MNN  + EPTG
Sbjct: 137 P----GGYKAFIKAMNAKAKSLGMNNTRFVEPTG 166


>sp|Q0JC27|NLP2_ORYSJ Protein NLP2 OS=Oryza sativa subsp. japonica GN=NLP2 PE=2 SV=2
          Length = 936

 Score = 33.1 bits (74), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 68  AVPYGGQRENCELSDRDARDLDMNNPSYFEPTGDFDFYEKSASGRSGQECLDGKL 122
           ++P G QR++C+L   D +    N   +   +G+ DFY  +A+ +S  E   G L
Sbjct: 685 SLPDGSQRQSCQLQISDVK--KSNEDEFHIGSGNSDFYGANATAKSNSEVTQGPL 737


>sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis
           thaliana GN=PME34 PE=2 SV=1
          Length = 598

 Score = 32.7 bits (73), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 352 FPALDRSREGDGLEARFNAFKIPESNFLVFEATVRTCRDGCQPVTLLPQGVVKLSLLCVD 411
           FP   R +E + LE   +     +++ +V +    TC+   + +   PQ   +  ++ V 
Sbjct: 262 FPRWMRPKEREILEMPVSQI---QADIIVSKDGNGTCKTISEAIKKAPQNSTRRIIIYVK 318

Query: 412 AYCTGHSGRNEPSLGRKRREIASVGDSEGVVVNSEGKT 449
           A   G    N   +GRK+  +  VGD +G  V S GK+
Sbjct: 319 A---GRYEENNLKVGRKKINLMFVGDGKGKTVISGGKS 353


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,811,066
Number of Sequences: 539616
Number of extensions: 8824080
Number of successful extensions: 17512
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 17507
Number of HSP's gapped (non-prelim): 12
length of query: 522
length of database: 191,569,459
effective HSP length: 122
effective length of query: 400
effective length of database: 125,736,307
effective search space: 50294522800
effective search space used: 50294522800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)