RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1623
(522 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 8e-09
Identities = 69/451 (15%), Positives = 140/451 (31%), Gaps = 139/451 (30%)
Query: 34 RQFIKKS---TTAASLAACERECAESRDFICRSFNYRAVPYGGQRENCELSD---RDARD 87
+++ + AA L + +++ A + + + + R +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGE 151
Query: 88 LDM----------NNPSYFEPTGDF-DFYEKSASGRSGQECLDGKLPYVVNQVCSEDGME 136
+ N YFE + D Y+ L G L + SE
Sbjct: 152 GNAQLVAIFGGQGNTDDYFE---ELRDLYQTYHV-------LVGDLIKFSAETLSE---- 197
Query: 137 FTLRTPEGFLGRIYTYGYYDRCFYRGNGGTANVLR-ISGAQGYPDCGTQRYGDT----MT 191
+RT +++T G N+L + PD + Y +
Sbjct: 198 -LIRTTLDA-EKVFTQGL-------------NILEWLENPSNTPD---KDYLLSIPISCP 239
Query: 192 NIVVVQFSDYVQTSRDKRYN---LTCLFRG---PGEAVVTSSYM-TANSGSPIPIEYLPA 244
I V+Q + YV T++ + L +G + +VT+ + +S +
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE----SFF-- 293
Query: 245 ENSLSSRVRLQILF-------QGRPTNTIAVGDPLTFKLDSQDGYNYVTDIFATNVIARD 297
+ + + +LF + P ++ P + ++ + + + + + ++
Sbjct: 294 VSVRKA---ITVLFFIGVRCYEAYPNTSLP---PSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 298 PYSGRSVQLIDRYGYWIIESTFNHLPVNQ---------------CSPQRSFSALTVTIFS 342
Q+ D + T +HLP + P +S L +T+
Sbjct: 348 -------QVQDY-----VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 343 FRCPVDNFVFPALDRSREGDGLEARFNAFKIPESN-FLV----F------EATVRTCRDG 391
+ P LD+SR F+ K+ SN FL F A+ +D
Sbjct: 396 AKAP------SGLDQSR------IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD- 442
Query: 392 CQPVTLLPQGV-VKLSLLCVDAYCTGHSGRN 421
L+ V + + Y T G +
Sbjct: 443 -----LVKNNVSFNAKDIQIPVYDT-FDGSD 467
Score = 49.7 bits (118), Expect = 2e-06
Identities = 60/341 (17%), Positives = 107/341 (31%), Gaps = 98/341 (28%)
Query: 223 VVTSSYMTAN-------SGSPIPIEYLPAENSLSSRVRLQILFQG------RPTNTIAVG 269
V T+S+ A+ P P E A++ ++ L F G P+
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 270 DPLTFKLDS-QDGYNYVTDI--FATNVIARDPYSGRSVQLIDRYGYWIIESTFNHLPVNQ 326
L L ++ Y DI A ++ + + + + + Y P ++
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN-YITARIMAKR-PFDK 139
Query: 327 CSPQRSFSAL----------TVTIF------------------SFRCPVDNFVFPA---- 354
S SAL V IF ++ V + + +
Sbjct: 140 KSN----SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 355 --LDRSRE------GDGLEAR---FNAFKIPESNFLVFEATVRTCRDGCQPVTLLPQ-GV 402
L R+ GL N P+ ++L ++ P++ P GV
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL---LSI--------PIS-CPLIGV 243
Query: 403 VKLSLLCVDAYCTGHSGRNEPSLGRKRREIASVGDSEGVVVN---SEGKTKNGTDDEEQV 459
++L+ V A G + P R + + G S+G+V +E + V
Sbjct: 244 IQLAHYVVTAKLLGFT----PGELRSYLK-GATGHSQGLVTAVAIAETDS--WESFFVSV 296
Query: 460 REMIEVS--VVFESRYEMPQLQTMQPAIPDSI---CMSNRE 495
R+ I V + P ++P SI + N E
Sbjct: 297 RKAITVLFFIGVRCYEAYPNT-----SLPPSILEDSLENNE 332
Score = 42.0 bits (98), Expect = 5e-04
Identities = 43/216 (19%), Positives = 72/216 (33%), Gaps = 67/216 (31%)
Query: 287 DIFATNVIARDPYSGRSVQLIDRYGYWIIESTFNHLPVNQC---SPQRS------FSALT 337
D++ T+ A+D ++ D YG+ I++ N+ PVN ++ +SA+
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 338 VTIFSFRCPVDNFVFPALDRSREGDGLEARFNAFKIPESNFLVFEATVRTCRDGCQPVTL 397
+F ++ + F+ + L AT T QP
Sbjct: 1693 FETIVDGKLKTEKIFKEINEH-------STSYTFRSEKG-LL--SATQFT-----QPALT 1737
Query: 398 L----------PQGVVKLSLLCVDAYCTGHSGRNEPSLGRKRRE---IASVGD----SEG 440
L +G++ DA GH SLG E +AS+ D
Sbjct: 1738 LMEKAAFEDLKSKGLIPA-----DATFAGH------SLG----EYAALASLADVMSIESL 1782
Query: 441 V-VVNSEGKTKNGTDDEEQVREMIEVSVVFESRYEM 475
V VV G T ++ + + S Y M
Sbjct: 1783 VEVVFYRGMT---------MQVAVPRDELGRSNYGM 1809
Score = 32.3 bits (73), Expect = 0.43
Identities = 44/315 (13%), Positives = 85/315 (26%), Gaps = 109/315 (34%)
Query: 184 QRYGDTMTNIVVVQFSDYVQTSRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIPIEYLP 243
YG ++ +IV + NLT F G + +Y + +
Sbjct: 1655 DTYGFSILDIV-----------INNPVNLTIHFGGEKGKRIRENYSA--------MIF-- 1693
Query: 244 AENSLSSRVRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNYVTD-----IFATNVIARDP 298
E + +++ + +F+ ++ + TF+ S+ G T + A
Sbjct: 1694 -ETIVDGKLKTEKIFKEINEHSTS----YTFR--SEKGLLSATQFTQPALTLMEKAA--- 1743
Query: 299 YSGRSVQLIDRYGYWIIESTF-NHLPVNQCSPQRS---FSALTVT--IFSFRCPVDNFVF 352
+ + G ++TF H S ++AL + S
Sbjct: 1744 -----FEDLKSKGLIPADATFAGH----------SLGEYAALASLADVMSIE---S---- 1781
Query: 353 PALD--RSREGDGLEARFNAFKIPESNFLVFEATVRTCRDGCQPVTLLPQGVVK-LSLLC 409
++ R G +P R + + P V S
Sbjct: 1782 -LVEVVFYR-G-----MTMQVAVPRDE---------LGRSNYGMIAINPGRVAASFSQEA 1825
Query: 410 VDAYCTGHSGRNEPSLGRKRREIA--------SV--GDSEGV--VVN--SEGKTKN---- 451
+ R + EI V GD + V N + K +
Sbjct: 1826 LQYVVERVGKRTGWLV-----EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Query: 452 ---GTDDEEQVREMI 463
+ E+V +
Sbjct: 1881 ELQKSLSLEEVEGHL 1895
Score = 30.4 bits (68), Expect = 2.1
Identities = 27/159 (16%), Positives = 41/159 (25%), Gaps = 47/159 (29%)
Query: 2 QLIFVLPQPKLLRTDFKHLP----ISNNIGVRMRMRRQFIKKSTTAA--SL----A-ACE 50
F + L T F P + ++ + I T A SL A A
Sbjct: 1716 SYTFRSEKGLLSATQFTQ-PALTLMEKAAFEDLK-SKGLIPADATFAGHSLGEYAALAS- 1772
Query: 51 RECAESRDF--ICRSFNYR------AVPYGGQRENCELSDRDARDLDMNNPSYFEPTGD- 101
A+ + YR AVP R + NP +
Sbjct: 1773 --LADVMSIESLVEVVFYRGMTMQVAVPRDEL-------GRSNYGMIAINPGRVAASFSQ 1823
Query: 102 --FDFYEKSASGRSGQECLDGKLPYVVN------Q-VCS 131
+ + R+G +VN Q V +
Sbjct: 1824 EALQYVVERVGKRTGWLV------EIVNYNVENQQYVAA 1856
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 8e-05
Identities = 62/472 (13%), Positives = 112/472 (23%), Gaps = 152/472 (32%)
Query: 87 DLDMNNPSY--------FEPT--GDFDFYEKSASGR---SGQECLD-GKLPYVVNQV--- 129
D + Y FE +FD + + S +E V+
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 130 --CSEDGMEFTLRTPEGFLGRIYTYGY---YDRCFYRGNGGTANVLRISGAQGYPDCGTQ 184
E + F+ + Y + Y + +
Sbjct: 68 FWTLLSKQE---EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM------YIEQRDR 118
Query: 185 RYGDTMTNIVVVQFSDYVQTSRDKRY-NL-TCLFR-------------GPGEAVVTSSYM 229
Y D F+ Y SR + Y L L G G+ V
Sbjct: 119 LYND------NQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-- 169
Query: 230 TANSGS-----PIPIEYLPAENSLSSRVRLQIL----FQGRPTNTIAVGDPLTFKLDSQD 280
S I +L +N S L++L +Q P T KL
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 281 GYNYVTDIFATNVIARDPYSGRSVQLI--DRYGYWIIESTFNHLPVNQCSPQRSFSALTV 338
+ + + PY + L+ + +
Sbjct: 230 IQAELRRLLKSK-----PYE-NCL-LVLLNVQNAKAWNA--------------------- 261
Query: 339 TIFSFRCPV-----DNFVFPALDRSREGD-GLEARFNAFKIPESNFLVFEATVRTCRDGC 392
F+ C + V L + L+ E L+ CR
Sbjct: 262 --FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQD 317
Query: 393 QPVTLLPQGVVKLSLLCVDAYCTGHSGRNEPSLGRKRREIASVGDSEGVVVNSEGKTKNG 452
LP+ V+ + + S R+ + + N +
Sbjct: 318 -----LPREVLTTNPRRLSII--AESIRDGLA----TWD------------NWK------ 348
Query: 453 TDDEEQVREMIEVSVVFESRYEMPQLQTMQPAIPDSICMSNREYYSLLTTLF 504
+ +++ +IE S+ E R+ + L ++F
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEY------------------RKMFDRL-SVF 381
Score = 34.4 bits (78), Expect = 0.11
Identities = 63/513 (12%), Positives = 136/513 (26%), Gaps = 163/513 (31%)
Query: 2 QLIFVLPQPKLLRTDFKHLPISNNIGVRMRMRRQFIKKSTTAASLA---ACERECAESRD 58
+L++ + R+D ++ +RR K L + + +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 59 FICRSFNYRAVPYGGQRENCELSDRDARDLD-MNNPSYFEPTGDFD---FYEKSASGRSG 114
C+ L+ R + D ++ + + D
Sbjct: 264 LSCKIL---------------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 115 Q--ECLDGKLPYVVNQVCSEDGMEFTLRTPEGFLGRIYTYGYYDRCFYRGNGGTANVLRI 172
+ +C LP +V + + ++ E + T+ +
Sbjct: 309 KYLDCRPQDLP---REVLTTNPRRLSI-IAESIRDGLATWDNWK---------------- 348
Query: 173 SGAQGYPDCGTQRYGDTMTNIVVVQFSDYVQTSRD--KRYNLTCLFRGPGEAVVTSSYMT 230
+ +C D +T I+ + S V + K ++ +F
Sbjct: 349 -----HVNC------DKLTTII--ESSLNVLEPAEYRKMFDRLSVFP------------- 382
Query: 231 ANSGSPIPIEYLP----------AENSLSSRVRLQILFQGRPTNTIAVGDPLTFKLDSQ- 279
+ IP L ++ + ++ + +TI++ + +L +
Sbjct: 383 --PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKL 439
Query: 280 -----------DGYNYVTDIFATNVIARDPYSGRSVQLIDRYGYWIIESTFNHLPVNQCS 328
D YN + +D+Y Y I +HL
Sbjct: 440 ENEYALHRSIVDHYN---------IPKTFDSDDLIPPYLDQYFYSHIG---HHL--KNIE 485
Query: 329 PQRSFSALTVTIFSFRCPVDNFVFPALDRSREGDGLEARFNAFKIPESNFLVFEATVR-T 387
+ + FR FL E +R
Sbjct: 486 HPERMTLFRMVFLDFR---------------------------------FL--EQKIRHD 510
Query: 388 CRDGCQPVTLLPQGVVKLSLLCVDAYCTGHSGRNEPSLGRKRREIAS-VGDSEGVVVNSE 446
++L +L + Y + N+P R I + E ++ S+
Sbjct: 511 STAWNASGSILN------TLQQLKFY-KPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 447 GKTKNGTDDEEQVREMIEVSVVFESRYEMPQLQ 479
D ++ M E +FE ++ Q+Q
Sbjct: 564 YT------DLLRIALMAEDEAIFEEAHK--QVQ 588
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 38.9 bits (90), Expect = 0.004
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 17/93 (18%)
Query: 38 KKSTTAASLAACERECAESRDFICRSFNYRAVPYGGQRENCELSDRDARDLDMNNPSYFE 97
KK A S+ C +C E +F CR+F Y + + + C + + + +
Sbjct: 19 KKQLGAGSIEECAAKCEEDEEFTCRAFQYHS-----KEQQCVIMAENRKSSIIIRMRDVV 73
Query: 98 PTGDFDFYEKSASG------------RSGQECL 118
+ + +G ++G C
Sbjct: 74 LFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQ 106
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding,
transcription; NMR {Trichoderma reesei}
Length = 107
Score = 31.4 bits (71), Expect = 0.18
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 11 KLLRTD--FKHLPISNNIGVRMRMRRQFIKKSTTAASLAACERECAESRDFICRSFNYRA 68
K+ R+D K + +G + RQ + + T A L +E E+ + A
Sbjct: 18 KVDRSDDIIKPKTVGKEVGKAIEQGRQKFEPTMTQAELG---KEIGETAATVASYERGTA 74
Query: 69 VP 70
P
Sbjct: 75 TP 76
>1n12_A Mature fimbrial protein PAPE; immunoglobulin-like fold, donor
strand complementation; HET: MSE; 1.87A {Escherichia
coli} SCOP: b.2.3.2 PDB: 1n0l_B*
Length = 138
Score = 29.9 bits (66), Expect = 0.89
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 9/129 (6%)
Query: 179 PDCGTQRYGDTMTNIVVVQFSDYVQTSRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIP 238
P C ++ + S ++ N+ C + V ++ T N+ +
Sbjct: 2 PACTVSNTTVDWQDVEIQTLSQNGNHEKEFTVNMRCPYNLGTMKVTITATNTYNNAILVQ 61
Query: 239 IEYLPAENSLSSRVRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNYVTDI-FATNVIARD 297
+ + L L+ N +G +T G + ++ A+
Sbjct: 62 NTSNTSSDGLLVY-----LYNSNAGN---IGTAITLGTPFTPGKITGNNADKTISLHAKL 113
Query: 298 PYSGRSVQL 306
Y G L
Sbjct: 114 GYKGNMQNL 122
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein,
molybdate, tungstate, ligand, unknown function,
transport protein; 1.60A {Pyrococcus furiosus} PDB:
3cg3_A
Length = 296
Score = 29.1 bits (64), Expect = 3.6
Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
Query: 249 SSRVRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNYVTDIFATN--VIARDPYSGRSVQL 306
S ++ GR + I V D Y +FATN VIA S ++
Sbjct: 47 SVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFATNEIVIAFTDKSRYVEEM 106
Query: 307 IDRYGYWIIESTFNHLPVNQCSPQ 330
W + P
Sbjct: 107 KSNPDKWYEILAREDVRFGFSDPN 130
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85,
glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A
{Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*
Length = 626
Score = 29.4 bits (65), Expect = 3.8
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 243 PAENSLSSRVRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNYVTDIFATNVIARDPYSGR 302
P S V L+ N A D L + + + + + + +
Sbjct: 30 PDAPFNRSHVPLEPGRVADRVNANADTDAHLVSLSALNRHT--SGVPSQGAPVFYENTFS 87
Query: 303 SVQLIDRYGYW 313
D YW
Sbjct: 88 YWHYTDLMVYW 98
>1wth_D HUB protein 27, baseplate structural protein GP27; triple-stranded
beta-helix, OB fold, pseudohexamer, T4 tail HUB,
GP5-GP27; 2.80A {Enterobacteria phage T4} SCOP:
b.106.1.1 b.106.1.1 PDB: 1pdj_D 1k28_D 2z6b_D
Length = 391
Score = 29.0 bits (64), Expect = 4.0
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 153 GYYDRCFYRGNGGTANVLRISGAQGYPDCGTQRYGD-TMTNIVVVQFSDYVQTSRDKRYN 211
Y + + G + ++ GY C T G+ +T V + F+D + + Y
Sbjct: 282 AYSEMTYRNGYEEAIRLQTMAQYDGYAKCST--IGNFNLTPGVKIIFNDSKNQFKTEFYV 339
Query: 212 LTCLFRGPGEAVVTSSYMTANSGSPIPIEYLPAENSLSS 250
+ VT YM N+ I+ + +N S
Sbjct: 340 DEVIHELSNNNSVTHLYMFTNATKLETIDPVKVKNEFKS 378
>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A
{Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A
3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A
Length = 184
Score = 28.3 bits (62), Expect = 5.2
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 38 KKSTTAASLAACERECA--ESRDFICRSFNYRAVPYGGQRENCELSDRDARDLDMNNPSY 95
K+ + C C + F C++F + R+ C ++ M++
Sbjct: 34 IKTKKVNTADQCANRCTRNKGLPFTCKAFVFDK-----ARKQCLWFPFNS----MSSGVK 84
Query: 96 FEPTGDFDFYEKSASGRSGQECLDGK 121
E +FD YE R C+ GK
Sbjct: 85 KEFGHEFDLYENKDYIR---NCIIGK 107
>2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein,
icosahedral virus; 3.50A {Bluetongue virus} SCOP:
e.28.1.1
Length = 901
Score = 29.0 bits (64), Expect = 5.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 252 VRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNYVTDIFATNVIA 295
VR++ F RP + I G P ++ + + G +Y T +AT
Sbjct: 781 VRVKF-FDARPPDDILQGLPFSYDTNEKGGLSYATIKYATETTI 823
>3sp8_A Hepatocyte growth factor alpha chain; kringle domain, Met tyrosine
kinase, hormone; HET: MES; 1.86A {Homo sapiens} PDB:
3hn4_A*
Length = 264
Score = 28.5 bits (62), Expect = 5.5
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 38 KKSTTAASLAACERECAESR--DFICRSFNYRAVPYGGQRENCELSDRDARDLDMNNPSY 95
K+ + C C ++ F C++F + R+ C ++ M++
Sbjct: 34 IKTKKVNTADQCANRCTRNKGLPFTCKAFVFDK-----ARKQCLWFPFNS----MSSGVK 84
Query: 96 FEPTGDFDFYEKSASGRSGQECLDGK 121
E +FD YE + C+ GK
Sbjct: 85 KEFGHEFDLYENKD---YIRNCIIGK 107
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein
translocation, periplasmic oxidoreductase, signal
peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas
mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A*
1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Length = 433
Score = 28.6 bits (64), Expect = 5.8
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 132 EDGMEFTLRTPEGFLGRIYT-YGYYDRCFYRGNGGTANVLRISGAQGYPD 180
ED + + +R G L + Y + G VL + A GY
Sbjct: 302 EDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQ-GDKAVLLMDPATGYYQ 350
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin,
peptidoglycan-anchor secreted, virulence, cell adhesion;
1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A
3is0_X 3is1_X
Length = 429
Score = 27.7 bits (60), Expect = 9.5
Identities = 24/134 (17%), Positives = 39/134 (29%), Gaps = 9/134 (6%)
Query: 188 DTMTNIVVVQFSDYVQTSRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIPIEYLPAENS 247
D+ TN F++YV + R + + L E V T +P+ A
Sbjct: 92 DSATNTAKYTFTNYVDIYNNVRGSFSLLSWPFKELVTT-------DKQSVPVGITVAGED 144
Query: 248 LSSRVRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNYVTDIFATNVIARDPYSGRSVQLI 307
+ V + R I+ + LT Y F T R G
Sbjct: 145 YTQNV--IFNYGNRTVPVISDINYLTKDFAEFTTYINQNRAFNTGSKVRLSGQGFKFTSP 202
Query: 308 DRYGYWIIESTFNH 321
D + + +
Sbjct: 203 DEIEVYKVLNNSQF 216
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.415
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,999,842
Number of extensions: 479717
Number of successful extensions: 965
Number of sequences better than 10.0: 1
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 21
Length of query: 522
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 424
Effective length of database: 3,965,535
Effective search space: 1681386840
Effective search space used: 1681386840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.9 bits)