RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1623
(522 letters)
>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 40.3 bits (94), Expect = 4e-05
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 39 KSTTAASLAACERECAESR--DFICRSFNYRAVPYGGQRENCELSDRDARDLDMNNPSYF 96
K+ + C C ++ F C++F + R+ C ++ +
Sbjct: 25 KTKKVNTADQCANRCTRNKGLPFTCKAFVFDK-----ARKQCLWFPFNSMS----SGVKK 75
Query: 97 EPTGDFDFYEK 107
E +FD YE
Sbjct: 76 EFGHEFDLYEN 86
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 30.0 bits (67), Expect = 0.75
Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 13/149 (8%)
Query: 299 YSGRSVQLIDRYGYWIIESTFNHLPVNQCSPQRSFSALTVTIFSFRCPVDNFVFPALDRS 358
YS + + W F+ +NQ + + + + + + F P +
Sbjct: 5 YSTAVLNCLKNLDLW----CFDVFSLNQAADDHALRTIVFELLTRHNLISRFKIPTVFLM 60
Query: 359 REGDGLEARFNAFKIPESNFL----VFEATVRTCRDGCQPVTLLP--QGVVKLSLLCVDA 412
D LE + +K P N + V + L + + D
Sbjct: 61 SFLDALETGYGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDY 120
Query: 413 YCTGHSGRNEPSLGRKRREIASVGDSEGV 441
H+G + + E A V + V
Sbjct: 121 ---EHTGTTNSFHIQTKSECAIVYNDRSV 146
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 29.4 bits (66), Expect = 1.4
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 252 VRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNYVTDIFATNVIA 295
VR++ F RP + I G P ++ + + G +Y T +AT
Sbjct: 725 VRVKF-FDARPPDDILQGLPFSYDTNEKGGLSYATIKYATETTI 767
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit
II {Escherichia coli [TaxId: 562]}
Length = 91
Score = 27.0 bits (60), Expect = 1.6
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 494 REYYSLLTTLFILLTFLIVVTAFAGFYF 521
E SL+ T F L+ +++ F
Sbjct: 12 LEQRSLILTAFGLMLIVVIPAILMAVGF 39
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 89
Score = 27.0 bits (60), Expect = 1.8
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 421 NEPSLGRKRREIASVGDSEGVVVNSEGKTKNGTDDEEQVREMIEVSVVFESRYEM 475
+ S+G E +EGV+ E T + ++ E+ + + E+
Sbjct: 17 GDQSIGDLIAEAMDKVGNEGVITVEESNT---FGLQLELTEVAVIKAGAATEVEL 68
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
{Escherichia coli [TaxId: 562]}
Length = 501
Score = 28.8 bits (64), Expect = 1.8
Identities = 5/42 (11%), Positives = 15/42 (35%)
Query: 478 LQTMQPAIPDSICMSNREYYSLLTTLFILLTFLIVVTAFAGF 519
Q + ++ + Y + T +++ F + + G
Sbjct: 30 SQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGL 71
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 28.4 bits (62), Expect = 2.5
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 11/63 (17%)
Query: 451 NGTDDEEQVREMIEVSVVFESRYEMPQLQTMQPAIPDSICMSNREYYSLLTTLFILLTFL 510
NGT+ + V S +E PQ +P +S+L LL L
Sbjct: 2 NGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQ-----------FSMLAAYMFLLIML 50
Query: 511 IVV 513
Sbjct: 51 GFP 53
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
562]}
Length = 213
Score = 27.6 bits (61), Expect = 3.3
Identities = 18/135 (13%), Positives = 34/135 (25%), Gaps = 16/135 (11%)
Query: 135 MEFTLRTPEGFLGRIYTYGYYDRCFYRGNGGTANVLRISGAQGYPDCGTQRYGDTMTNIV 194
+ TLRT G VL + G Q
Sbjct: 44 LNVTLRTECAVDAIRAIAKEVPEAIV----GAGTVLNPQQLAEVTEAGAQFAISPGLTEP 99
Query: 195 VVQFSDYVQTSRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIPIEYLPAENSLSSRVRL 254
+++ + + + PG + V+ + + G ++ PAE + +
Sbjct: 100 LLKAA--------TEGTIPLI---PGISTVSELMLGMDYGLKE-FKFFPAEANGGVKALQ 147
Query: 255 QILFQGRPTNTIAVG 269
I G
Sbjct: 148 AIAGPFSQVRFCPTG 162
>d1igna2 a.4.1.6 (A:446-594) DNA-binding domain of rap1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 149
Score = 26.8 bits (59), Expect = 4.1
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 275 KLDSQDGYNYVTDI---FATNVIARDPYSGRSVQLIDRYGYWIIESTFNHLPVNQCSPQR 331
K + + Y + F ++ DP +GRS+ + I P + +
Sbjct: 3 KFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEP 62
Query: 332 SFSALTVTIFSFRCPV 347
+F+A S R P+
Sbjct: 63 NFAAYRTQ--SRRGPI 76
>d1n5ua1 a.126.1.1 (A:2-196) Serum albumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 195
Score = 26.4 bits (58), Expect = 7.0
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 103 DFYEKSASGRSGQECLDGKLPYVVNQVCSEDG 134
+F + + S + C +++C+
Sbjct: 47 EFAKTCVADESAENCDKSLHTLFGDKLCTVAT 78
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 26.2 bits (56), Expect = 9.5
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 224 VTSSYMTANSGSPIPIEYLPAENSLSSRVRLQILFQGRPTNTIAVGDPLTFKLDSQDGYN 283
+ + + + S S +PI ++++ L+I +G + D G
Sbjct: 3 LPTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNF-DR--------QGQL 53
Query: 284 YVTDIFATNVIARDPYSGRSVQLIDRYGYW 313
++ D+F N+ +P + + +
Sbjct: 54 FLLDVFEGNIFKINPETKEIKRPFVSHKAN 83
>d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein
{Adeno-associated virus, aav-2 [TaxId: 272636]}
Length = 519
Score = 26.4 bits (58), Expect = 9.8
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 273 TFKLDSQDGYNYVTDIFATNVIARDPYSGRSV--QLID--RYGYWIIESTFNHLPVNQCS 328
T+ L + + + Y + + Y G S D R+ + L +N
Sbjct: 30 TWALPTYNNHLYKQISSQSGASNDNHYFGYSTPWGYFDFNRFHCHFSPRDWQRL-INNNW 88
Query: 329 PQRSFSALTVTIF 341
R L +F
Sbjct: 89 GFRP-KRLNFKLF 100
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 25.9 bits (56), Expect = 9.8
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 159 FYRGNGGTANVLRISGAQGYPDCGTQRYGDTMTNIVV 195
FY N L + QG C ++G +
Sbjct: 66 FYVTQASEENTLILGPFQGKVACQMIQFGKGVCGTAA 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.415
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,960,724
Number of extensions: 93354
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 13
Length of query: 522
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 433
Effective length of database: 1,185,626
Effective search space: 513376058
Effective search space used: 513376058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)