BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16230
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 196 GLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCI-VNESMLTGESVPVMKTALPSQ 254
G + E LVPGDI+ I K G + DA LL+G+ + V++S LTGES+PV K P Q
Sbjct: 138 GKWSEQEAAILVPGDIVSI-KLGDIIPADARLLEGDPLKVDQSALTGESLPVTKH--PGQ 194
Query: 255 SDF 257
F
Sbjct: 195 EVF 197
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 201 VPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNE 260
VP + GDI+++ + G + D +++G V+ESM++GE VPV+K+ + +
Sbjct: 146 VPVEEVAVGDIVIV-RPGEKIPVDGVVVEGESYVDESMISGEPVPVLKS---KGDEVFGA 201
Query: 261 KEDVNHTLYCGTVILQARYHGDEYLHAVVIR 291
+N+T G + ++A G E L A +++
Sbjct: 202 T--INNT---GVLKIRATRVGGETLLAQIVK 227
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 201 VPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNE 260
VP + GDI+++ + G + D +++G V+ESM++GE VPV+K+ + +
Sbjct: 224 VPVEEVAVGDIVIV-RPGEKIPVDGVVVEGESYVDESMISGEPVPVLKS---KGDEVFGA 279
Query: 261 KEDVNHTLYCGTVILQARYHGDEYLHAVVIR 291
+N+T G + ++A G E L A +++
Sbjct: 280 T--INNT---GVLKIRATRVGGETLLAQIVK 305
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 201 VPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNE 260
VP + GDI+++ + G + D +++G V+ESM++GE VPV+K+ + +
Sbjct: 25 VPVEEVAVGDIVIV-RPGEKIPVDGVVVEGESYVDESMISGEPVPVLKS---KGDEVFGA 80
Query: 261 KEDVNHTLYCGTVILQARYHGDEYLHAVVIR 291
+N+T G + ++A G E L A +++
Sbjct: 81 T--INNT---GVLKIRATRVGGETLLAQIVK 106
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 193 RSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTA 250
+ G EEV ++ GD++ + + G + D + +G V+ESM+TGE +PV K A
Sbjct: 231 KEDGSEEEVSLDNVAVGDLLRV-RPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEA 287
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 197 LYEEVPTTHLVP-GDII-VIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMK 248
L EE LV GDII V+P G D +++G+ +V+ES++TGE++PV K
Sbjct: 32 LSEEQVDVELVQRGDIIKVVP--GGKFPVDGRVIEGHSMVDESLITGEAMPVAK 83
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 199 EEVPTTHLVPGDII------VIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALP 252
+ + +VPGDI+ +P L+ +T L+ V++S+LTGESV V+K P
Sbjct: 139 QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLR----VDQSILTGESVSVIKHTEP 194
Query: 253 SQSDFYNEKEDVNHTLYCGTVILQARYHG 281
D +D + L+ GT I + G
Sbjct: 195 V-PDPRAVNQDKKNMLFSGTNIAAGKALG 222
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 199 EEVPTTHLVPGDII------VIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALP 252
+ + +VPGDI+ +P L+ +T L+ V++S+LTGESV V+K P
Sbjct: 138 QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLR----VDQSILTGESVSVIKHTEP 193
Query: 253 SQSDFYNEKEDVNHTLYCGTVILQARYHG 281
D +D + L+ GT I + G
Sbjct: 194 V-PDPRAVNQDKKNMLFSGTNIAAGKALG 221
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 199 EEVPTTHLVPGDII------VIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALP 252
+ + +VPGDI+ +P L+ +T L+ V++S+LTGESV V+K P
Sbjct: 138 QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLR----VDQSILTGESVSVIKHTEP 193
Query: 253 SQSDFYNEKEDVNHTLYCGTVILQARYHG 281
D +D + L+ GT I + G
Sbjct: 194 V-PDPRAVNQDKKNMLFSGTNIAAGKALG 221
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 199 EEVPTTHLVPGDII------VIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALP 252
+ + +VPGDI+ +P L +T L+ V++S+LTGESV V+K P
Sbjct: 138 QRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLR----VDQSILTGESVSVIKHTEP 193
Query: 253 SQSDFYNEKEDVNHTLYCGTVILQARYHG 281
D +D + L+ GT I + G
Sbjct: 194 V-PDPRAVNQDKKNMLFSGTNIAAGKAIG 221
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 196 GLYEEVPTTHLVPGDII------VIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMK 248
G +E+ +VPGDI+ +IP G + DA L V++S LTGES+ V K
Sbjct: 186 GTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQ-----VDQSALTGESLAVDK 239
>pdb|3HRD|B Chain B, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|F Chain F, Crystal Structure Of Nicotinate Dehydrogenase
Length = 330
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 198 YEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIV 234
YE++ H+ GD +V P G T A TL+ GN ++
Sbjct: 65 YEKI---HVTWGDTMVTPDGGATSASRQTLITGNAVI 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,383,347
Number of Sequences: 62578
Number of extensions: 321629
Number of successful extensions: 601
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 24
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)