Query psy16230
Match_columns 292
No_of_seqs 334 out of 2347
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 00:12:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0208|consensus 100.0 4.9E-45 1.1E-49 355.9 20.1 237 55-292 111-359 (1140)
2 TIGR01657 P-ATPase-V P-type AT 100.0 1.1E-42 2.5E-47 360.6 28.5 235 56-292 91-339 (1054)
3 KOG0209|consensus 100.0 1.6E-37 3.4E-42 298.5 23.7 235 56-292 120-369 (1160)
4 TIGR01523 ATPase-IID_K-Na pota 100.0 2E-35 4.3E-40 305.1 20.2 194 91-292 16-217 (1053)
5 TIGR01522 ATPase-IIA2_Ca golgi 100.0 6.5E-34 1.4E-38 291.1 22.1 194 91-292 13-215 (884)
6 PRK10517 magnesium-transportin 100.0 1.4E-33 3.1E-38 287.8 22.7 194 91-292 58-262 (902)
7 TIGR01524 ATPase-IIIB_Mg magne 100.0 2.1E-33 4.6E-38 286.2 22.5 193 91-292 24-228 (867)
8 TIGR01647 ATPase-IIIA_H plasma 100.0 1.3E-32 2.8E-37 277.1 20.1 172 99-292 1-176 (755)
9 PRK15122 magnesium-transportin 100.0 3.8E-32 8.2E-37 277.7 23.0 195 91-292 36-261 (903)
10 TIGR01106 ATPase-IIC_X-K sodiu 100.0 6.7E-32 1.5E-36 278.9 21.8 189 92-292 27-235 (997)
11 TIGR01517 ATPase-IIB_Ca plasma 100.0 9.1E-32 2E-36 276.9 21.3 182 91-292 48-252 (941)
12 KOG0202|consensus 100.0 4.7E-33 1E-37 269.2 10.2 194 91-292 13-213 (972)
13 COG0474 MgtA Cation transport 100.0 4.4E-30 9.6E-35 262.8 17.2 186 98-292 43-238 (917)
14 KOG0205|consensus 100.0 1.2E-29 2.7E-34 239.4 7.4 180 91-292 27-218 (942)
15 KOG0204|consensus 100.0 3.8E-29 8.2E-34 242.2 7.7 185 91-292 107-310 (1034)
16 TIGR01116 ATPase-IIA1_Ca sarco 99.9 4.5E-25 9.8E-30 226.8 18.0 156 128-292 1-170 (917)
17 PF00122 E1-E2_ATPase: E1-E2 A 99.9 1.5E-22 3.3E-27 176.9 15.0 117 159-292 2-123 (230)
18 TIGR01512 ATPase-IB2_Cd heavy 99.9 3E-22 6.4E-27 195.4 15.4 118 144-278 10-130 (536)
19 TIGR01525 ATPase-IB_hvy heavy 99.9 4.8E-22 1E-26 194.9 16.4 124 140-278 5-131 (556)
20 PRK14010 potassium-transportin 99.9 9.1E-22 2E-26 194.3 16.8 136 131-279 29-184 (673)
21 KOG0203|consensus 99.9 6.3E-23 1.4E-27 199.1 8.2 177 98-280 57-251 (1019)
22 COG2217 ZntA Cation transport 99.9 2.5E-22 5.4E-27 198.7 11.9 132 151-291 172-306 (713)
23 PRK01122 potassium-transportin 99.9 2.2E-21 4.7E-26 191.7 18.4 136 131-279 30-184 (679)
24 TIGR01497 kdpB K+-transporting 99.9 3E-21 6.5E-26 190.4 18.3 108 160-279 74-185 (675)
25 TIGR01511 ATPase-IB1_Cu copper 99.9 8.3E-22 1.8E-26 193.2 12.0 127 151-286 52-181 (562)
26 PRK11033 zntA zinc/cadmium/mer 99.9 2.8E-21 6.1E-26 194.6 12.1 127 151-287 204-333 (741)
27 PRK10671 copA copper exporting 99.8 8.2E-21 1.8E-25 194.1 12.4 127 152-288 285-414 (834)
28 TIGR01652 ATPase-Plipid phosph 99.8 4.2E-20 9.2E-25 192.8 15.7 139 112-252 1-154 (1057)
29 TIGR01494 ATPase_P-type ATPase 99.8 3.4E-19 7.4E-24 172.8 12.0 113 162-285 5-122 (499)
30 KOG0207|consensus 99.8 1.3E-19 2.8E-24 178.1 7.7 130 152-291 340-473 (951)
31 PLN03190 aminophospholipid tra 99.7 5.1E-17 1.1E-21 169.7 17.8 140 111-253 86-240 (1178)
32 COG2216 KdpB High-affinity K+ 99.6 5.8E-15 1.3E-19 137.7 8.9 77 188-276 105-181 (681)
33 KOG0208|consensus 99.6 1.5E-15 3.2E-20 150.3 3.2 70 1-70 300-374 (1140)
34 KOG0210|consensus 99.2 3.1E-10 6.6E-15 109.6 12.9 143 107-252 74-231 (1051)
35 PF00690 Cation_ATPase_N: Cati 99.0 1E-09 2.3E-14 77.7 5.0 57 91-147 10-69 (69)
36 KOG0206|consensus 99.0 1.2E-09 2.6E-14 112.7 7.5 144 108-253 28-185 (1151)
37 KOG0209|consensus 98.9 1.2E-09 2.7E-14 107.2 5.5 70 1-70 305-384 (1160)
38 smart00831 Cation_ATPase_N Cat 98.9 3.4E-09 7.3E-14 73.9 5.1 53 98-150 9-62 (64)
39 TIGR01657 P-ATPase-V P-type AT 98.5 8.5E-08 1.8E-12 100.9 3.8 69 1-69 280-353 (1054)
40 COG0474 MgtA Cation transport 96.9 0.001 2.3E-08 69.4 4.8 54 1-60 190-243 (917)
41 TIGR01523 ATPase-IID_K-Na pota 96.8 0.0011 2.3E-08 70.2 4.4 54 1-60 168-222 (1053)
42 TIGR01522 ATPase-IIA2_Ca golgi 96.6 0.0025 5.4E-08 66.4 5.4 54 1-60 167-220 (884)
43 PRK10517 magnesium-transportin 96.4 0.004 8.7E-08 64.9 4.8 53 1-60 215-267 (902)
44 TIGR01116 ATPase-IIA1_Ca sarco 96.4 0.0042 9E-08 65.0 4.9 53 1-60 123-175 (917)
45 TIGR01524 ATPase-IIIB_Mg magne 96.0 0.0081 1.8E-07 62.5 4.8 53 1-60 181-233 (867)
46 PRK15122 magnesium-transportin 95.8 0.013 2.8E-07 61.3 5.2 54 1-60 204-266 (903)
47 TIGR01517 ATPase-IIB_Ca plasma 95.4 0.016 3.5E-07 60.9 4.5 42 1-60 216-257 (941)
48 TIGR01106 ATPase-IIC_X-K sodiu 95.4 0.02 4.4E-07 60.5 4.9 50 1-60 191-240 (997)
49 PF00122 E1-E2_ATPase: E1-E2 A 95.0 0.017 3.6E-07 50.1 2.6 44 1-59 84-127 (230)
50 KOG0202|consensus 93.4 0.1 2.2E-06 52.9 4.6 54 1-60 165-218 (972)
51 TIGR01647 ATPase-IIIA_H plasma 92.9 0.094 2E-06 53.9 3.6 40 1-60 142-181 (755)
52 TIGR01512 ATPase-IB2_Cd heavy 92.5 0.13 2.7E-06 50.8 3.8 39 1-59 104-142 (536)
53 PRK01122 potassium-transportin 91.5 0.24 5.3E-06 50.1 4.6 41 1-58 154-194 (679)
54 TIGR01525 ATPase-IB_hvy heavy 91.4 0.2 4.4E-06 49.6 3.9 39 1-59 105-143 (556)
55 TIGR01511 ATPase-IB1_Cu copper 90.8 0.22 4.8E-06 49.4 3.4 40 1-60 141-180 (562)
56 PRK14010 potassium-transportin 90.5 0.24 5.2E-06 50.0 3.5 41 1-58 154-194 (673)
57 TIGR01494 ATPase_P-type ATPase 88.4 0.46 9.9E-06 46.4 3.6 34 1-42 83-116 (499)
58 TIGR01497 kdpB K+-transporting 87.0 0.84 1.8E-05 46.2 4.5 42 1-59 155-196 (675)
59 PRK10671 copA copper exporting 83.9 1 2.3E-05 46.8 3.7 38 1-58 372-409 (834)
60 COG2217 ZntA Cation transport 83.2 0.44 9.5E-06 48.5 0.6 13 1-13 261-273 (713)
61 PRK11033 zntA zinc/cadmium/mer 80.4 1.3 2.9E-05 45.5 2.9 25 1-39 292-316 (741)
62 KOG4383|consensus 77.8 2.6 5.7E-05 42.3 3.8 39 190-230 159-197 (1354)
63 PF03120 DNA_ligase_OB: NAD-de 77.6 1 2.2E-05 32.7 0.8 22 202-223 46-67 (82)
64 KOG0205|consensus 70.0 3.3 7.2E-05 41.4 2.4 12 2-13 185-196 (942)
65 KOG0207|consensus 67.3 2.1 4.6E-05 44.1 0.5 13 1-13 428-440 (951)
66 PRK11507 ribosome-associated p 64.9 11 0.00025 26.4 3.7 27 191-220 39-65 (70)
67 PF15584 Imm44: Immunity prote 60.0 3.9 8.5E-05 30.2 0.6 19 208-227 13-31 (94)
68 COG4043 Preprotein translocase 54.5 15 0.00032 27.7 2.9 24 204-229 32-55 (111)
69 COG0272 Lig NAD-dependent DNA 53.9 9.2 0.0002 38.5 2.3 28 202-229 364-392 (667)
70 PF06251 Caps_synth_GfcC: Caps 47.5 16 0.00036 31.7 2.7 33 188-220 168-207 (229)
71 smart00532 LIGANc Ligase N fam 47.1 12 0.00026 36.1 1.9 22 202-223 359-380 (441)
72 PF12791 RsgI_N: Anti-sigma fa 44.7 52 0.0011 21.5 4.2 34 188-222 7-41 (56)
73 PF01455 HupF_HypC: HupF/HypC 43.5 71 0.0015 22.2 4.9 30 188-219 18-50 (68)
74 PF13275 S4_2: S4 domain; PDB: 43.1 18 0.00038 25.1 1.7 19 196-214 39-57 (65)
75 smart00306 HintN Hint (Hedgeho 41.9 28 0.00062 25.1 2.9 26 188-214 73-98 (100)
76 PRK14350 ligA NAD-dependent DN 41.4 11 0.00024 38.3 0.7 22 202-223 361-382 (669)
77 PRK04980 hypothetical protein; 41.0 95 0.0021 23.5 5.5 49 203-252 29-85 (102)
78 PRK08097 ligB NAD-dependent DN 39.7 18 0.00039 36.0 1.9 21 203-223 357-377 (562)
79 PRK14351 ligA NAD-dependent DN 38.0 20 0.00043 36.6 1.9 22 202-223 386-407 (689)
80 PRK07956 ligA NAD-dependent DN 37.6 21 0.00045 36.4 2.0 26 202-227 364-390 (665)
81 TIGR00575 dnlj DNA ligase, NAD 36.0 22 0.00048 36.1 1.9 22 202-223 352-373 (652)
82 PRK05015 aminopeptidase B; Pro 34.9 47 0.001 31.8 3.7 45 200-245 247-307 (424)
83 PF07591 PT-HINT: Pretoxin HIN 34.7 30 0.00064 27.3 2.1 27 199-226 70-96 (130)
84 PF06923 GutM: Glucitol operon 34.6 2.1E+02 0.0045 21.8 8.8 79 157-244 6-90 (109)
85 KOG0204|consensus 32.5 47 0.001 34.7 3.5 41 1-55 270-310 (1034)
86 PRK15175 Vi polysaccharide exp 30.7 78 0.0017 29.6 4.4 37 188-225 199-245 (355)
87 COG1188 Ribosome-associated he 30.5 65 0.0014 24.3 3.1 23 196-220 40-62 (100)
88 PF09866 DUF2093: Uncharacteri 30.5 36 0.00078 21.3 1.5 20 206-225 2-21 (42)
89 PRK02290 3-dehydroquinate synt 30.2 53 0.0011 30.5 3.1 26 187-214 299-324 (344)
90 PF12368 DUF3650: Protein of u 30.0 41 0.00088 19.2 1.5 15 97-111 13-27 (28)
91 cd00433 Peptidase_M17 Cytosol 29.5 52 0.0011 32.0 3.2 43 200-243 296-354 (468)
92 COG3887 Predicted signaling pr 28.3 4E+02 0.0087 26.9 8.9 27 138-164 19-45 (655)
93 PRK00913 multifunctional amino 27.3 62 0.0013 31.6 3.3 43 200-243 310-368 (483)
94 PF07016 CRAM_rpt: Cysteine-ri 26.1 31 0.00067 18.5 0.5 16 227-242 6-22 (24)
95 COG2501 S4-like RNA binding pr 25.9 1.2E+02 0.0026 21.5 3.7 29 190-221 38-66 (73)
96 TIGR02219 phage_NlpC_fam putat 25.2 39 0.00085 26.7 1.3 15 200-214 71-85 (134)
97 COG1465 Predicted alternative 24.9 74 0.0016 28.9 3.0 34 183-219 327-360 (376)
98 PRK14715 DNA polymerase II lar 24.6 54 0.0012 35.9 2.4 27 188-215 989-1015(1627)
99 cd00081 Hint Hedgehog/Intein d 24.3 92 0.002 23.9 3.3 26 188-214 73-98 (136)
100 PF09926 DUF2158: Uncharacteri 23.7 57 0.0012 21.5 1.6 11 207-218 2-12 (53)
101 PF01959 DHQS: 3-dehydroquinat 23.7 80 0.0017 29.5 3.1 25 188-214 310-334 (354)
102 KOG0210|consensus 23.1 4.4E+02 0.0096 27.3 8.2 94 122-217 96-204 (1051)
103 PRK11479 hypothetical protein; 21.6 47 0.001 29.9 1.1 19 199-218 58-76 (274)
104 TIGR00074 hypC_hupF hydrogenas 21.1 2.1E+02 0.0046 20.4 4.2 23 196-219 23-48 (76)
105 PRK10838 spr outer membrane li 20.8 63 0.0014 27.4 1.7 19 200-219 123-141 (190)
106 PF03453 MoeA_N: MoeA N-termin 20.7 86 0.0019 25.6 2.5 33 203-236 81-115 (162)
107 smart00739 KOW KOW (Kyprides, 20.5 1.3E+02 0.0028 16.0 2.5 14 206-220 2-15 (28)
No 1
>KOG0208|consensus
Probab=100.00 E-value=4.9e-45 Score=355.91 Aligned_cols=237 Identities=43% Similarity=0.652 Sum_probs=209.1
Q ss_pred eccceeeEEEEeceEEEEecc-ccceEee---cCCCCCCChhhhhh-cCCCCHHHHHhhhcccccceecCCCCcHHHHHH
Q psy16230 55 TEVTELKVINVKKLMYVWSDQ-EQNFIKL---VGLDKGLTNSQLHQ-FNGFTFEEQFMRGIVYGKNEINVPIQNISSLFV 129 (292)
Q Consensus 55 tg~~~~r~f~~r~~ry~~~~~-~~~f~~~---~~~~~~~~~~~~~~-~~GLs~~~~~~r~~~~G~N~i~~~~~~~~~ll~ 129 (292)
.+...+|+|.|++.+|.|..+ ...|.+. ...+.....++.+. +.||+.+++.+|+..||+|.+..+.++++++++
T Consensus 111 ~~~~~~r~~~~kkl~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~gL~~~~~~~r~~iyG~N~i~l~ik~i~~iLv 190 (1140)
T KOG0208|consen 111 EGVGRVRDFAYKKLEYDPVSELRFIWPPFQKAEFRDDPRWYSTESYVSNGLERQEIIDRRIIYGRNVISLPIKSISQILV 190 (1140)
T ss_pred cccchhhhhhhhcceeccccccceeeccccchhhccchhhhccceeccCCccHHHHHhHHhhcCCceeeeecccHHHHHH
Confidence 345668999999999999986 4444442 22222222333333 399999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCceEEEEecCCeEEEEECCCCC
Q psy16230 130 LEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLV 207 (292)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~~v~V~r~~g~~~~i~~~~Lv 207 (292)
+|.++|||+||++++++|..++|++||++|+++.+++++.+.++.| .+++++|......|+|+|+ |.|++|+++|||
T Consensus 191 ~EvL~PfYlFQ~fSv~lW~~d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~~~~V~V~R~-g~~~ti~S~eLV 269 (1140)
T KOG0208|consen 191 KEVLNPFYLFQAFSVALWLADSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKFTCPVTVIRD-GFWETVDSSELV 269 (1140)
T ss_pred HhccchHHHHHhHHhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEC-CEEEEEeccccc
Confidence 9999999999999999999999999999999999999999999999 7889999988889999998 999999999999
Q ss_pred CCcEEEEccCCCEEeccEEEEeeeEEeecccccCCCcceeeccCCCCC-----CCCCcccCCCcEEecccEEEEEEEcCC
Q psy16230 208 PGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQS-----DFYNEKEDVNHTLYCGTVILQARYHGD 282 (292)
Q Consensus 208 ~GDii~i~~~G~~iP~D~~ll~G~~~vdeS~LTGES~pv~K~~~~~~~-----~~~~~~~~~~~~l~~Gt~vi~~~~~~~ 282 (292)
|||++.++.+|-.+|||++|++|+|+||||||||||+||.|.|++... ..+..+.+++|++|+||.++|++.+++
T Consensus 270 PGDil~i~~~~~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g 349 (1140)
T KOG0208|consen 270 PGDILYIPPPGKIMPCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLG 349 (1140)
T ss_pred cccEEEECCCCeEeecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCcceeeccceEEEeecCCC
Confidence 999999964499999999999999999999999999999999998332 255668899999999999999999999
Q ss_pred ccEEEEEEeC
Q psy16230 283 EYLHAVVIRT 292 (292)
Q Consensus 283 ~~v~avvi~T 292 (292)
+.++|+|+||
T Consensus 350 ~~v~a~V~RT 359 (1140)
T KOG0208|consen 350 GPVLAMVLRT 359 (1140)
T ss_pred CceEEEEEec
Confidence 9999999998
No 2
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=1.1e-42 Score=360.59 Aligned_cols=235 Identities=39% Similarity=0.621 Sum_probs=204.2
Q ss_pred ccceeeEEEEeceEEEEeccccc-eEeecCCCCCCC----hhhhhhcCCCCHHHHHhhhcccccceecCCCCcHHHHHHH
Q psy16230 56 EVTELKVINVKKLMYVWSDQEQN-FIKLVGLDKGLT----NSQLHQFNGFTFEEQFMRGIVYGKNEINVPIQNISSLFVL 130 (292)
Q Consensus 56 g~~~~r~f~~r~~ry~~~~~~~~-f~~~~~~~~~~~----~~~~~~~~GLs~~~~~~r~~~~G~N~i~~~~~~~~~ll~~ 130 (292)
+....++|.||+.||.|+++++. |.++.......+ ....+..+|||.+|+++|++.||+|+++.+.+++++++++
T Consensus 91 ~~~~~~~f~~~~~~y~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~GLs~~e~~~r~~~yG~N~i~~~~~s~~~ll~~ 170 (1054)
T TIGR01657 91 GGEEPIYFDFRKQRFSYHEKELKIFSPLPYLFKEKSFGVYSTCAGHSNGLTTGDIAQRKAKYGKNEIEIPVPSFLELLKE 170 (1054)
T ss_pred CCCceEEEEEEEEEEEEECCCCceEEecccccccccchhhhhhhhhccCCCHHHHHHHHHhcCCCeeecCCCCHHHHHHH
Confidence 34568999999999999999996 999876433221 1112233899999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCceEEEEecCCeEEEEECCCCCC
Q psy16230 131 EALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVP 208 (292)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~~v~V~r~~g~~~~i~~~~Lv~ 208 (292)
++++||+++|++++++|+..+||+++++++++++++.+..+++++ .+++++|......++|+|+ |++++|++++|||
T Consensus 171 ~~~~p~~i~~i~~~~l~~~~~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~~~~~v~V~Rd-g~~~~I~s~eLvp 249 (1054)
T TIGR01657 171 EVLHPFYVFQVFSVILWLLDEYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVHKPQSVIVIRN-GKWVTIASDELVP 249 (1054)
T ss_pred HHhchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeEEEEEC-CEEEEEEcccCCC
Confidence 999999999999999999999999999999999999999999988 7888888765559999998 9999999999999
Q ss_pred CcEEEEcc--CCCEEeccEEEEeeeEEeecccccCCCcceeeccCCCC--C--CCCCcccCCCcEEecccEEEEEEEcC-
Q psy16230 209 GDIIVIPK--HGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQ--S--DFYNEKEDVNHTLYCGTVILQARYHG- 281 (292)
Q Consensus 209 GDii~i~~--~G~~iP~D~~ll~G~~~vdeS~LTGES~pv~K~~~~~~--~--~~~~~~~~~~~~l~~Gt~vi~~~~~~- 281 (292)
||+|.+ + +|+.|||||+|++|+|.||||+|||||.|+.|.+.+.. . +.+....+++|++|+||.|++++++.
T Consensus 250 GDiv~l-~~~~g~~iPaD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g 328 (1054)
T TIGR01657 250 GDIVSI-PRPEEKTMPCDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPG 328 (1054)
T ss_pred CCEEEE-ecCCCCEecceEEEEeCcEEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCC
Confidence 999999 8 89999999999999999999999999999999987541 1 13334567899999999999987654
Q ss_pred CccEEEEEEeC
Q psy16230 282 DEYLHAVVIRT 292 (292)
Q Consensus 282 ~~~v~avvi~T 292 (292)
++.++|+|+||
T Consensus 329 ~g~~~~vV~~T 339 (1054)
T TIGR01657 329 DTGCLAIVVRT 339 (1054)
T ss_pred CCcEEEEEEeC
Confidence 35799999997
No 3
>KOG0209|consensus
Probab=100.00 E-value=1.6e-37 Score=298.49 Aligned_cols=235 Identities=29% Similarity=0.473 Sum_probs=195.7
Q ss_pred ccceeeEEEEeceEEEEeccccceEeecCCCCCCChhhhhhcCCCCHHH-HHhhhcccccceecCCCCcHHHHHHHHHhc
Q psy16230 56 EVTELKVINVKKLMYVWSDQEQNFIKLVGLDKGLTNSQLHQFNGFTFEE-QFMRGIVYGKNEINVPIQNISSLFVLEALN 134 (292)
Q Consensus 56 g~~~~r~f~~r~~ry~~~~~~~~f~~~~~~~~~~~~~~~~~~~GLs~~~-~~~r~~~~G~N~i~~~~~~~~~ll~~~~~~ 134 (292)
+...-.+|+|++.||.|+++.+.|.++... -+.++..+.+.+|+..++ +......||.|..+++.|+|.++|.++...
T Consensus 120 ~~~~q~~F~Fqk~ry~~~~e~~~F~~~~fp-~~~~~g~~~k~~G~~~~~~i~~a~~~~G~N~fdi~vPtF~eLFkE~A~a 198 (1160)
T KOG0209|consen 120 DGMEQYFFEFQKKRYLYDEEKGKFSRLTFP-TDEPFGYFQKSTGHEEESEIKLAKHKYGKNKFDIVVPTFSELFKEHAVA 198 (1160)
T ss_pred CCceEEEEEEEEeeEEEcccccceeccccC-cCCcchhhhhccCcchHHHHHHHHHHhcCCccccCCccHHHHHHHhccC
Confidence 344566899999999999999999998653 334778888889998443 333445699999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCceEEEEecCCeEEEEECCCCCCCcEE
Q psy16230 135 PFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDII 212 (292)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~~v~V~r~~g~~~~i~~~~Lv~GDii 212 (292)
|||+||++|+.+|++++||+|++..++|++.-...-..|+. ...++.|......+.|+|+ ++|..+.++||.|||+|
T Consensus 199 PfFVFQVFcvgLWCLDeyWYySlFtLfMli~fE~tlV~Qrm~~lse~R~Mg~kpy~I~v~R~-kKW~~l~seeLlPgDvV 277 (1160)
T KOG0209|consen 199 PFFVFQVFCVGLWCLDEYWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTMGNKPYTINVYRN-KKWVKLMSEELLPGDVV 277 (1160)
T ss_pred ceeeHhHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEec-CcceeccccccCCCceE
Confidence 99999999999999999999999888887765554444443 6667776655559999998 99999999999999999
Q ss_pred EEccC--CCEEeccEEEEeeeEEeecccccCCCcceeeccCCCCC--CCCCcccC-CCcEEecccEEEEEEEcC------
Q psy16230 213 VIPKH--GCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQS--DFYNEKED-VNHTLYCGTVILQARYHG------ 281 (292)
Q Consensus 213 ~i~~~--G~~iP~D~~ll~G~~~vdeS~LTGES~pv~K~~~~~~~--~~~~~~~~-~~~~l~~Gt~vi~~~~~~------ 281 (292)
.|.+. ...||||.+|+.|+|.||||||||||+|..|++....+ +.++.+.+ +.|++|+||+++|.+...
T Consensus 278 SI~r~~ed~~vPCDllLL~GsciVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~ 357 (1160)
T KOG0209|consen 278 SIGRGAEDSHVPCDLLLLRGSCIVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKT 357 (1160)
T ss_pred EeccCcccCcCCceEEEEecceeechhhhcCCCccccccccccCChhhhcccccccceEEEEcCceEEEecCCccccccC
Confidence 99532 45799999999999999999999999999999988765 35555444 889999999999987544
Q ss_pred -CccEEEEEEeC
Q psy16230 282 -DEYLHAVVIRT 292 (292)
Q Consensus 282 -~~~v~avvi~T 292 (292)
++.++|.|+||
T Consensus 358 pDggc~a~VlrT 369 (1160)
T KOG0209|consen 358 PDGGCVAYVLRT 369 (1160)
T ss_pred CCCCeEEEEEec
Confidence 45699999998
No 4
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=2e-35 Score=305.11 Aligned_cols=194 Identities=23% Similarity=0.350 Sum_probs=167.7
Q ss_pred hhhhhhc--CCCCHHHHHhhhcccccceecCCC-CcHHHHHHHHHhchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy16230 91 NSQLHQF--NGFTFEEQFMRGIVYGKNEINVPI-QNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGI 167 (292)
Q Consensus 91 ~~~~~~~--~GLs~~~~~~r~~~~G~N~i~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 167 (292)
+..++++ +|||++|+++|++.||+|+++.++ +++|.+|++++++|+.++++++.++++..+.|..+++|+++++++.
T Consensus 16 ~~~l~t~~~~GLs~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~~~~~~~iIl~vv~in~ 95 (1053)
T TIGR01523 16 AEFIGTSIPEGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMHDWIEGGVISAIIALNI 95 (1053)
T ss_pred HHHhCcCcccCCCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHH
Confidence 4455554 799999999999999999998765 7999999999999999999999999998888889999999999999
Q ss_pred HHHHHHHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEee-eEEeecccccCCC
Q psy16230 168 VSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG-NCIVNESMLTGES 243 (292)
Q Consensus 168 ~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G-~~~vdeS~LTGES 243 (292)
++.++|++ .++++++....+ +++|+|| |++++|++++|||||+|.+ ++||+|||||+|+++ ++.||||+|||||
T Consensus 96 ~i~~~QE~~aekal~aL~~l~~~~~~ViRd-g~~~~I~a~eLVpGDIv~L-~~Gd~VPAD~rLi~~~~L~VDES~LTGES 173 (1053)
T TIGR01523 96 LIGFIQEYKAEKTMDSLKNLASPMAHVIRN-GKSDAIDSHDLVPGDICLL-KTGDTIPADLRLIETKNFDTDEALLTGES 173 (1053)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEeC-CeeeecCHhhCCCCCEEEE-CCCCEeeccEEEEEeCceEEEchhhcCCC
Confidence 99999998 777777776655 8999998 9999999999999999999 799999999999998 5899999999999
Q ss_pred cceeeccCCCCC-CCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 244 VPVMKTALPSQS-DFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 244 ~pv~K~~~~~~~-~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
.||.|.+..... +...+..++.|++|+||.|++|++ .|+|++|
T Consensus 174 ~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g------~~vVvat 217 (1053)
T TIGR01523 174 LPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRA------KGICIAT 217 (1053)
T ss_pred CceeccccccccccccCCcccCCCccccCceEEeeeE------EEEEEEe
Confidence 999998754211 111223467899999999999875 6666665
No 5
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=6.5e-34 Score=291.11 Aligned_cols=194 Identities=23% Similarity=0.309 Sum_probs=164.5
Q ss_pred hhhhhhc--CCCC-HHHHHhhhcccccceecCCC-CcHHHHHHHHH-hchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy16230 91 NSQLHQF--NGFT-FEEQFMRGIVYGKNEINVPI-QNISSLFVLEA-LNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVF 165 (292)
Q Consensus 91 ~~~~~~~--~GLs-~~~~~~r~~~~G~N~i~~~~-~~~~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 165 (292)
++.++++ +||| .+|+++|++.||+|+++.+. +++|.++++++ .+|+++++++++++++..+.|..++.+++++++
T Consensus 13 ~~~l~t~~~~GLs~~~ev~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g~~~~~~~i~~~i~~ 92 (884)
T TIGR01522 13 CSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMGNIDDAVSITLAILI 92 (884)
T ss_pred HHHhCcCcccCCCcHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHcchhhHHHHHhHHHH
Confidence 4455555 6999 88999999999999999764 89999999999 799999999999888877777777778777788
Q ss_pred HHHHHHHHHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeee-EEeecccccC
Q psy16230 166 GIVSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTG 241 (292)
Q Consensus 166 ~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~-~~vdeS~LTG 241 (292)
...+.+++++ ++.++++....+ +++|+|+ |++++|++++|||||+|.+ ++||+|||||+|++|+ +.||||+|||
T Consensus 93 ~~~i~~~qe~~a~~~l~~L~~l~~~~~~ViRd-g~~~~I~~~eLv~GDiv~l-~~Gd~IPaDg~ii~g~~l~VDES~LTG 170 (884)
T TIGR01522 93 VVTVGFVQEYRSEKSLEALNKLVPPECHLIRE-GKLEHVLASTLVPGDLVCL-SVGDRVPADLRIVEAVDLSIDESNLTG 170 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeeEEEEC-CEEEEEEHHHCccCCEEEe-cCCCEEeeeEEEEEcCceEEEcccccC
Confidence 8888888888 777888877665 8999998 9999999999999999999 7999999999999995 8999999999
Q ss_pred CCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 242 ESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 242 ES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
||.|+.|.+++...+......+++|++|+||.+.+|++ .++|++|
T Consensus 171 ES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~------~~~V~~t 215 (884)
T TIGR01522 171 ETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHG------KGIVVGT 215 (884)
T ss_pred CCcceecccccccccccccccccCceEEeCCEEEeeeE------EEEEEEe
Confidence 99999999876433222233467899999999998765 5566654
No 6
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=1.4e-33 Score=287.84 Aligned_cols=194 Identities=26% Similarity=0.317 Sum_probs=162.4
Q ss_pred hhhhhhc-CCCCHHHHHhhhcccccceecCCC-CcHHHHHHHHHhchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q psy16230 91 NSQLHQF-NGFTFEEQFMRGIVYGKNEINVPI-QNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIV 168 (292)
Q Consensus 91 ~~~~~~~-~GLs~~~~~~r~~~~G~N~i~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 168 (292)
+..++++ +|||++|+++|++.||+|+++.++ .++|.+|++++.+||.++++++.++.++.+.|..+++|+++++++.+
T Consensus 58 ~~~l~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~~~~~a~~I~~iv~i~~~ 137 (902)
T PRK10517 58 WKTFDTHPEGLNEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATEDLFAAGVIALMVAISTL 137 (902)
T ss_pred HHHhCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 4445554 799999999999999999998775 67999999999999999888776666665666778888999999999
Q ss_pred HHHHHHH--HHHHHhhhccCc-eEEEEecC-----CeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeee-EEeecccc
Q psy16230 169 SSVIQTR--QKSLHDTVNTVD-KVTVKRSK-----GLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESML 239 (292)
Q Consensus 169 ~~~~~~~--~~~l~~l~~~~~-~v~V~r~~-----g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~-~~vdeS~L 239 (292)
+++++++ .++++++....+ +++|+|++ |++++|++++|||||+|.+ ++||+|||||+|++|+ +.||||+|
T Consensus 138 i~~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~~~g~~~~I~~~eLvpGDiV~l-~~Gd~IPaDg~li~g~~l~VDES~L 216 (902)
T PRK10517 138 LNFIQEARSTKAADALKAMVSNTATVLRVINDKGENGWLEIPIDQLVPGDIIKL-AAGDMIPADLRILQARDLFVAQASL 216 (902)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEECCccCCCCeEEEEEHHhCCCCCEEEE-CCCCEEeeeEEEEEcCceEEEecCc
Confidence 9999888 667777776665 89999973 5789999999999999999 7999999999999996 69999999
Q ss_pred cCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 240 TGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 240 TGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
||||.||.|.+++..++. ....+++|++|+||.|++|++ .++|++|
T Consensus 217 TGES~PV~K~~~~~~~~~-~~~~~~~n~vfaGT~V~~G~~------~~vV~at 262 (902)
T PRK10517 217 TGESLPVEKFATTRQPEH-SNPLECDTLCFMGTNVVSGTA------QAVVIAT 262 (902)
T ss_pred CCCCCceecccccccccc-cCccccccceeeCceEeeeeE------EEEEEEe
Confidence 999999999988643211 123357899999999999764 5666665
No 7
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=2.1e-33 Score=286.24 Aligned_cols=193 Identities=27% Similarity=0.309 Sum_probs=163.7
Q ss_pred hhhhhhc-CCCCHHHHHhhhcccccceecCCC-CcHHHHHHHHHhchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q psy16230 91 NSQLHQF-NGFTFEEQFMRGIVYGKNEINVPI-QNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIV 168 (292)
Q Consensus 91 ~~~~~~~-~GLs~~~~~~r~~~~G~N~i~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 168 (292)
+..++++ +|||++|+++|++.||+|+++.++ +++|+++++++++|+.++++++.++++..+.|..+++|+++++++.+
T Consensus 24 ~~~l~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a~ls~~~~~~~~~~iI~~iv~~~~~ 103 (867)
T TIGR01524 24 LRKLGVHETGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTDDLEATVIIALMVLASGL 103 (867)
T ss_pred HHHhCCCCCCCCHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHH
Confidence 3445444 799999999999999999998775 67999999999999999999998888888888889999999999999
Q ss_pred HHHHHHH--HHHHHhhhccCc-eEEEEe------cCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeee-EEeeccc
Q psy16230 169 SSVIQTR--QKSLHDTVNTVD-KVTVKR------SKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESM 238 (292)
Q Consensus 169 ~~~~~~~--~~~l~~l~~~~~-~v~V~r------~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~-~~vdeS~ 238 (292)
+.+++++ +++++++....+ .++|+| | |++++|++++|||||+|.+ ++||+|||||+|++|+ +.||||+
T Consensus 104 i~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~d-g~~~~I~~~eLv~GDiV~l-~~Gd~VPaDg~li~g~~l~VDES~ 181 (867)
T TIGR01524 104 LGFIQESRAERAAYALKNMVKNTATVLRVINENGN-GSMDEVPIDALVPGDLIEL-AAGDIIPADARVISARDLFINQSA 181 (867)
T ss_pred HHHHHHHHHHHHHHHHhhhccCeeEEEEecccCCC-CeEEEEEhhcCCCCCEEEE-CCCCEEcccEEEEecCceEEEccc
Confidence 9999887 666666666554 899999 6 9999999999999999999 8999999999999996 6999999
Q ss_pred ccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 239 LTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 239 LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
|||||.|+.|.+++...+ ..+..+++|++|+||.+.+|++ .++|++|
T Consensus 182 LTGES~PV~K~~~~~~~~-~~~~~~~~n~vfaGT~v~~G~~------~~~V~~t 228 (867)
T TIGR01524 182 LTGESLPVEKFVEDKRAR-DPEILERENLCFMGTNVLSGHA------QAVVLAT 228 (867)
T ss_pred ccCCCCcccccCCccccc-cccccccccceecCCeEEEeEE------EEEEEEE
Confidence 999999999998764211 1123357899999999999765 5555554
No 8
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=1.3e-32 Score=277.09 Aligned_cols=172 Identities=27% Similarity=0.360 Sum_probs=151.0
Q ss_pred CCCHHHHHhhhcccccceecCCCCcHHHHHHHHHhchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--H
Q psy16230 99 GFTFEEQFMRGIVYGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTR--Q 176 (292)
Q Consensus 99 GLs~~~~~~r~~~~G~N~i~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~ 176 (292)
|||.+|+++|++.||+|+++.++++.|.+|++++++|+.++++++.++.+..+.|..+++++++++++..+++++++ .
T Consensus 1 GLs~~ea~~r~~~~G~N~~~~~~~~~~~~~~~~~~~~~~~lL~~aa~~s~~~~~~~~~~~i~~~~~i~~~i~~~qe~~a~ 80 (755)
T TIGR01647 1 GLTSAEAKKRLAKYGPNELPEKKVSPLLKFLGFFWNPLSWVMEAAAIIAIALENWVDFVIILGLLLLNATIGFIEENKAG 80 (755)
T ss_pred CcCHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhhcchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 89999999999999999999877888999999999999888877777766666677778888888999999999998 6
Q ss_pred HHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeee-EEeecccccCCCcceeeccCCCC
Q psy16230 177 KSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTGESVPVMKTALPSQ 254 (292)
Q Consensus 177 ~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~-~~vdeS~LTGES~pv~K~~~~~~ 254 (292)
+.++++....+ +++|+|| |++++|++++|||||+|.+ ++||+|||||+|++|+ +.||||+|||||.||.|.++
T Consensus 81 ~~~~~L~~~~~~~~~V~Rd-g~~~~I~~~~Lv~GDiV~l-~~Gd~IPaDg~vi~g~~~~VDeS~LTGES~PV~K~~~--- 155 (755)
T TIGR01647 81 NAVEALKQSLAPKARVLRD-GKWQEIPASELVPGDVVRL-KIGDIVPADCRLFEGDYIQVDQAALTGESLPVTKKTG--- 155 (755)
T ss_pred HHHHHHHhhCCCeEEEEEC-CEEEEEEhhhCcCCCEEEE-CCCCEEeceEEEEecCceEEEcccccCCccceEeccC---
Confidence 77777766555 8999998 9999999999999999999 8999999999999997 89999999999999999754
Q ss_pred CCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 255 SDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 255 ~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
+.+|+||.+.+|++ .++|++|
T Consensus 156 -----------~~v~aGT~v~~G~~------~~~V~~t 176 (755)
T TIGR01647 156 -----------DIAYSGSTVKQGEA------EAVVTAT 176 (755)
T ss_pred -----------CeeeccCEEEccEE------EEEEEEc
Confidence 47899999998764 5666654
No 9
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=3.8e-32 Score=277.65 Aligned_cols=195 Identities=25% Similarity=0.311 Sum_probs=158.7
Q ss_pred hhhhhhc-CCCCHHHHHhhhcccccceecCCC-CcHHHHHHHHHhchhHHHHHHHHHHhhhhhH-----------HHHHH
Q psy16230 91 NSQLHQF-NGFTFEEQFMRGIVYGKNEINVPI-QNISSLFVLEALNPFYIFQVFTLCVWFAEAY-----------YYYTG 157 (292)
Q Consensus 91 ~~~~~~~-~GLs~~~~~~r~~~~G~N~i~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 157 (292)
+..++++ +|||++|+++|++.||+|+++.++ +++|.+|++++.+|+.++++++.+++++.++ |..++
T Consensus 36 ~~~l~~~~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~ 115 (903)
T PRK15122 36 LANLNTHRQGLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLRRGEETDLTGVI 115 (903)
T ss_pred HHHhCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCCccccHhHHH
Confidence 4455555 799999999999999999998765 7799999999999999888888888777653 34677
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhhhccCc-eEEEEecC-----CeEEEEECCCCCCCcEEEEccCCCEEeccEEEEe
Q psy16230 158 AIICMSVFGIVSSVIQTR--QKSLHDTVNTVD-KVTVKRSK-----GLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQ 229 (292)
Q Consensus 158 ~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~-----g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~ 229 (292)
+|+++++++.++++++++ .++++++....+ .++|+|++ |++++|++++|||||+|.+ ++||+|||||+|++
T Consensus 116 iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l-~~Gd~IPaDg~li~ 194 (903)
T PRK15122 116 IILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHL-SAGDMIPADVRLIE 194 (903)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEE-CCCCEEeeeEEEEE
Confidence 788888899999999988 667777766655 89999983 4789999999999999999 79999999999999
Q ss_pred ee-EEeecccccCCCcceeeccCCC---------CCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 230 GN-CIVNESMLTGESVPVMKTALPS---------QSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 230 G~-~~vdeS~LTGES~pv~K~~~~~---------~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
|+ +.||||+|||||.|+.|.+.+. ..+......++++++|+||.|++|++ .++|++|
T Consensus 195 g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~------~~~V~at 261 (903)
T PRK15122 195 SRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTA------TAVVVAT 261 (903)
T ss_pred cCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeE------EEEEEEe
Confidence 96 6899999999999999986310 00011122357899999999999765 5555554
No 10
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=6.7e-32 Score=278.85 Aligned_cols=189 Identities=18% Similarity=0.235 Sum_probs=157.1
Q ss_pred hhhhhc--CCCCHHHHHhhhcccccceecCC-CCcHHHHHHHHHhchhHHHHHHHHHHhhhh-------------hHHHH
Q psy16230 92 SQLHQF--NGFTFEEQFMRGIVYGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFAE-------------AYYYY 155 (292)
Q Consensus 92 ~~~~~~--~GLs~~~~~~r~~~~G~N~i~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 155 (292)
..+.++ +|||++|+++|++.||+|+++.+ ..++|.+|++++++|+.+++++++++.++. ++|..
T Consensus 27 ~~l~t~~~~GLs~~e~~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l~~~~~~~~~~~~~~~~~~~~~~ 106 (997)
T TIGR01106 27 RKYGTDLSKGLSAARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYL 106 (997)
T ss_pred HHhCcCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccCCCcccccHHH
Confidence 334444 69999999999999999999875 578999999999999988887776653332 34666
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeee-
Q psy16230 156 TGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN- 231 (292)
Q Consensus 156 ~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~- 231 (292)
+++++++++++.++.+++++ .+.++++....+ .++|+|+ |++++|++++|||||+|.+ ++||+|||||+|++|+
T Consensus 107 ~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRd-g~~~~I~~~~lv~GDiv~l-~~Gd~IPaD~~il~~~~ 184 (997)
T TIGR01106 107 GVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRD-GEKMSINAEQVVVGDLVEV-KGGDRIPADLRIISAQG 184 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEC-CEEEEeeHHHCCCCCEEEE-CCCCEEeeeEEEEEccC
Confidence 77888888999999999988 677777776655 8999998 9999999999999999999 7999999999999996
Q ss_pred EEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 232 CIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 232 ~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
+.||||+|||||.|+.|.+++.... ....+|++|+||.|++|++ .++|++|
T Consensus 185 l~VdeS~LTGES~pv~K~~~~~~~~----~~~~~n~l~~Gt~v~~G~~------~~~V~~t 235 (997)
T TIGR01106 185 CKVDNSSLTGESEPQTRSPEFTHEN----PLETRNIAFFSTNCVEGTA------RGIVVNT 235 (997)
T ss_pred cEEEccccCCCCCceeccCCCcccC----ccccCCeEEeccEeeeeeE------EEEEEEc
Confidence 7999999999999999988654322 2257799999999998764 5566654
No 11
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=9.1e-32 Score=276.87 Aligned_cols=182 Identities=21% Similarity=0.288 Sum_probs=150.5
Q ss_pred hhhhhhc--CCCC--HHHHHhhhcccccceecCCC-CcHHHHHHHHHhchhHHHHHHHHHHhhhhh-------------H
Q psy16230 91 NSQLHQF--NGFT--FEEQFMRGIVYGKNEINVPI-QNISSLFVLEALNPFYIFQVFTLCVWFAEA-------------Y 152 (292)
Q Consensus 91 ~~~~~~~--~GLs--~~~~~~r~~~~G~N~i~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-------------~ 152 (292)
++.++++ +||| ++|+++|++.||+|+++.++ +++|+++++++.+|+.++++++.++++..+ .
T Consensus 48 ~~~l~t~~~~GLs~~~~ev~~r~~~yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~~~~~~~~ 127 (941)
T TIGR01517 48 ATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAAVVSLVLGLPEPGEGKADTETG 127 (941)
T ss_pred HHHhCcCcccCCCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhcccccccCccccc
Confidence 4455555 6999 99999999999999998775 689999999999999888888777766643 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhcc--CceEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEE
Q psy16230 153 YYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNT--VDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLL 228 (292)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~--~~~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll 228 (292)
|..++++++++++..++++++++ .++++++... ..+++|+|+ |++++|++++|||||+|.+ ++||+|||||+|+
T Consensus 128 ~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRd-G~~~~I~~~~Lv~GDiV~l-~~Gd~IPaD~~li 205 (941)
T TIGR01517 128 WIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRG-GQEQQISIHDIVVGDIVSL-STGDVVPADGVFI 205 (941)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEEC-CEEEEEeHHHCCCCCEEEE-CCCCEecccEEEE
Confidence 56667777777777777777776 5555565432 238999998 9999999999999999999 7999999999999
Q ss_pred ee-eEEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 229 QG-NCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 229 ~G-~~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
+| ++.||||+|||||.|+.|.+++ .|++|+||.+.+|++ .++|++|
T Consensus 206 ~g~~l~VdES~LTGES~pv~K~~~~------------~n~v~~GT~v~~G~~------~~iV~~t 252 (941)
T TIGR01517 206 SGLSLEIDESSITGESDPIKKGAPK------------DSFLLSGTVVNEGSG------RMLVTAV 252 (941)
T ss_pred EcCcEEEEecccCCCCCcccccCCC------------CceEEeCCeEEeeEE------EEEEEEe
Confidence 99 7999999999999999998643 469999999999764 5666654
No 12
>KOG0202|consensus
Probab=99.98 E-value=4.7e-33 Score=269.24 Aligned_cols=194 Identities=26% Similarity=0.365 Sum_probs=170.9
Q ss_pred hhhhhhc--CCCCHHHHHhhhcccccceecCC-CCcHHHHHHHHHhchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy16230 91 NSQLHQF--NGFTFEEQFMRGIVYGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGI 167 (292)
Q Consensus 91 ~~~~~~~--~GLs~~~~~~r~~~~G~N~i~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 167 (292)
+.++..+ +|||.+|+..|++.||.|+++.+ .+++|+++++||.+++..++++|+++++...+|..+..|.+++++.+
T Consensus 13 ~~~f~t~~~~GLt~~ev~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~~~~e~~vI~liiv~nv 92 (972)
T KOG0202|consen 13 LAEFGTDLEEGLTSDEVTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLADFDEPFVITLIIVINV 92 (972)
T ss_pred HHHhCcCcccCCCHHHHHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccceeeeeeeeeee
Confidence 4455555 89999999999999999999865 59999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEee-eEEeecccccCCC
Q psy16230 168 VSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG-NCIVNESMLTGES 243 (292)
Q Consensus 168 ~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G-~~~vdeS~LTGES 243 (292)
...++|++ .+++++|++..+ .++|+|+ |+...+.+++|||||+|.+ +-||+||||.+|++- +..+|||.|||||
T Consensus 93 tVG~~QEy~aEkalEaLk~l~p~~~~V~R~-gk~~~i~A~eLVPGDiV~l-~vGDkVPADlRl~e~~sl~iDeS~LTGEs 170 (972)
T KOG0202|consen 93 TVGFVQEYNAEKALEALKELVPPMAHVLRS-GKLQHILARELVPGDIVEL-KVGDKIPADLRLIEAKSLRIDESSLTGES 170 (972)
T ss_pred eeeeeeehhhHHHHHHHHhcCCccceEEec-CcccceehhccCCCCEEEE-ecCCccccceeEEeeeeeeeecccccCCc
Confidence 99999999 888999988887 9999998 8999999999999999999 799999999999988 4689999999999
Q ss_pred cceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 244 VPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 244 ~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
.|+.|.......++-....+++|++|+||.|..|++ .++|+.|
T Consensus 171 ~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a------~GIVi~T 213 (972)
T KOG0202|consen 171 EPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRA------KGIVIGT 213 (972)
T ss_pred ccccccCccccCCCCCccccceeeEeecceeecCce------eEEEEec
Confidence 999997766442222335679999999999998776 5555544
No 13
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.4e-30 Score=262.83 Aligned_cols=186 Identities=29% Similarity=0.421 Sum_probs=157.7
Q ss_pred CCCCHHHHHhhhcccccceecCC-CCcHHHHHHHHHhchhHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHHH
Q psy16230 98 NGFTFEEQFMRGIVYGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFAEAYY----YYTGAIICMSVFGIVSSVI 172 (292)
Q Consensus 98 ~GLs~~~~~~r~~~~G~N~i~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~ 172 (292)
.||+.+|+.+|++.||.|++... ..++|..++.++++|+..++++++++.++.+.+ ..+..|+.+++++.+..++
T Consensus 43 ~GLs~~e~~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~~~~~~~~~~I~~~i~~n~~~g~~ 122 (917)
T COG0474 43 TGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDWVDAGVDAIVILLVVVINALLGFV 122 (917)
T ss_pred cCCCHHHHHHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcceeeehHHHHHHHHHHHH
Confidence 89999999999999999999855 579999999999999988888888777776665 5566778888888888888
Q ss_pred HHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeeeE-EeecccccCCCcceee
Q psy16230 173 QTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNC-IVNESMLTGESVPVMK 248 (292)
Q Consensus 173 ~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~~-~vdeS~LTGES~pv~K 248 (292)
|+. .+++++++...+ .++|+|| |++++|++++|||||+|.+ ++||+||||++|+++++ .||||+|||||.|+.|
T Consensus 123 qe~~a~~~l~~lk~~~~~~~~V~R~-g~~~~i~a~eLVpGDiV~l-~~gd~vPAD~rLl~~~~l~VdEs~LTGES~pv~K 200 (917)
T COG0474 123 QEYRAEKALEALKKMSSPKAKVLRD-GKFVEIPASELVPGDIVLL-EAGDVVPADLRLLESSDLEVDESALTGESLPVEK 200 (917)
T ss_pred HHHHHHHHHHHHHhhccCceEEEeC-CcEEEecHHHCCCCcEEEE-CCCCccccceEEEEecCceEEcccccCCCcchhc
Confidence 887 666776666555 9999997 9999999999999999999 79999999999999987 8999999999999999
Q ss_pred ccCCCCCCCCCccc-CCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 249 TALPSQSDFYNEKE-DVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 249 ~~~~~~~~~~~~~~-~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
.+.+...+. .+.. ++.|++|+||.|.+|++ .|+|++|
T Consensus 201 ~~~~~~~~~-~~~~~d~~n~l~sGt~V~~G~~------~giVvaT 238 (917)
T COG0474 201 QALPLTKSD-APLGLDRDNMLFSGTTVVSGRA------KGIVVAT 238 (917)
T ss_pred ccccccccc-ccccCCccceEEeCCEEEcceE------EEEEEEE
Confidence 987654211 1122 67899999999999874 6777765
No 14
>KOG0205|consensus
Probab=99.96 E-value=1.2e-29 Score=239.41 Aligned_cols=180 Identities=27% Similarity=0.333 Sum_probs=145.6
Q ss_pred hhhhhh-cCCCCHHHHHhhhcccccceecCCCCcHHHHHHHHHhchhHHHHHHHHHHhhh-h------hHHHHHHHHHHH
Q psy16230 91 NSQLHQ-FNGFTFEEQFMRGIVYGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFA-E------AYYYYTGAIICM 162 (292)
Q Consensus 91 ~~~~~~-~~GLs~~~~~~r~~~~G~N~i~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~i~~~ 162 (292)
++++.. +.|||.+|+++|+++||+|++..++.+.+..|+.-+++|+-+..-.+.++... . ..|..-..|..+
T Consensus 27 feeL~~t~~GLt~~E~~eRlk~fG~NkleEkken~~lKFl~Fm~~PlswVMEaAAimA~~Lang~~~~~DW~DF~gI~~L 106 (942)
T KOG0205|consen 27 FEELLCTREGLTSDEVEERLKIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIGLANGGGRPPDWQDFVGICCL 106 (942)
T ss_pred HHHHhcCCCCCchHHHHHHHHhhCchhhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhhee
Confidence 445543 48999999999999999999998888877778999999984444333333222 1 133334567778
Q ss_pred HHHHHHHHHHHHH--HHHHHhhhccC-ceEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeee-EEeeccc
Q psy16230 163 SVFGIVSSVIQTR--QKSLHDTVNTV-DKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESM 238 (292)
Q Consensus 163 ~~~~~~~~~~~~~--~~~l~~l~~~~-~~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~-~~vdeS~ 238 (292)
++++..+++++++ .+...+++... ++++|+|| |+|.++++++||||||+.+ +.|++||||++|++|+ ..||+|.
T Consensus 107 LliNsti~FveE~nAGn~aa~L~a~LA~KakVlRD-Gkw~E~eAs~lVPGDIlsi-k~GdIiPaDaRLl~gD~LkiDQSA 184 (942)
T KOG0205|consen 107 LLINSTISFIEENNAGNAAAALMAGLAPKAKVLRD-GKWSEQEASILVPGDILSI-KLGDIIPADARLLEGDPLKIDQSA 184 (942)
T ss_pred eeecceeeeeeccccchHHHHHHhccCcccEEeec-CeeeeeeccccccCceeee-ccCCEecCccceecCCccccchhh
Confidence 8889999999998 55555555444 49999998 9999999999999999999 7999999999999997 5799999
Q ss_pred ccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 239 LTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 239 LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
|||||.||.|+++++. |+|++|-||+. .|||+.|
T Consensus 185 lTGESLpvtKh~gd~v--------------fSgSTcKqGE~------eaVViAT 218 (942)
T KOG0205|consen 185 LTGESLPVTKHPGDEV--------------FSGSTCKQGEI------EAVVIAT 218 (942)
T ss_pred hcCCccccccCCCCce--------------ecccccccceE------EEEEEEe
Confidence 9999999999998865 99999999765 5677665
No 15
>KOG0204|consensus
Probab=99.95 E-value=3.8e-29 Score=242.21 Aligned_cols=185 Identities=23% Similarity=0.269 Sum_probs=146.5
Q ss_pred hhhhhhc--CCCCH--HHHHhhhcccccceecCC-CCcHHHHHHHHHhchhHHHHHHHHHHhhh---------hhHHHHH
Q psy16230 91 NSQLHQF--NGFTF--EEQFMRGIVYGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFA---------EAYYYYT 156 (292)
Q Consensus 91 ~~~~~~~--~GLs~--~~~~~r~~~~G~N~i~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 156 (292)
|..++++ .|++. +|..+|++.||.|.++.+ .++||.++|+.+.+...+++.+|+++++. .+|++.+
T Consensus 107 ~~~LKt~~~~Gi~~~~~el~~Rr~~fG~N~~p~k~~K~Fl~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~~~GW~eG~ 186 (1034)
T KOG0204|consen 107 CKKLKTDPNEGISGEDDELERRRKIFGSNTYPEKPPKGFLRFVWEALQDVTLIILMVAAVVSLGLGIYTPGIEDGWIEGV 186 (1034)
T ss_pred HHHhccCcccCCCCChHHHHHHHHhcCCCCCCCCCCccHHHHHHHHhccchHHHHHHHHHHHHhhhhccCCCCcccccch
Confidence 4556665 88876 678899999999999875 58999999999999988888777665543 3455555
Q ss_pred HHHHHH---HHHHHHHHHHHHH-HHHHHhhhccCceEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEee-e
Q psy16230 157 GAIICM---SVFGIVSSVIQTR-QKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG-N 231 (292)
Q Consensus 157 ~~i~~~---~~~~~~~~~~~~~-~~~l~~l~~~~~~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G-~ 231 (292)
.+++.+ ++++++-.+.+++ .+.|++... ..++.|+|+ |+.++|+..|||+||++.+ +.||.+||||++++| +
T Consensus 187 aI~~sV~~VV~VtA~nDy~qe~QF~~L~~~k~-~~k~~ViR~-G~r~~isI~diVVGDIv~l-k~GDqvPADGvli~gn~ 263 (1034)
T KOG0204|consen 187 AILLSVILVVLVTAVNDYRQELQFRKLQKEKR-NIKFQVIRG-GRRQQISIYDLVVGDIVQL-KIGDQVPADGVLIQGNS 263 (1034)
T ss_pred hheeeEEEEEEEeecchhHHhhhhhhhhhhhh-ceEEEEEEC-CEEEEEEEeeeeeccEEEe-ecCCccccceEEEeccc
Confidence 444332 2334444555555 555654322 238899998 9999999999999999999 799999999999999 5
Q ss_pred EEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 232 CIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 232 ~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
+.+|||+|||||.++.|.+. ..++|++||++++|. |++.|.||.++|
T Consensus 264 L~iDESSlTGESd~v~k~~~------------~dPfLlSGTkv~eGs--gkMlVTaVGmnt 310 (1034)
T KOG0204|consen 264 LKIDESSLTGESDHVQKSLD------------KDPFLLSGTKVMEGS--GKMLVTAVGMNT 310 (1034)
T ss_pred eeEecccccCCCcceeccCC------------CCCeEeecceeecCc--ceEEEEEeeecc
Confidence 78999999999999999753 457999999999965 589999999987
No 16
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.93 E-value=4.5e-25 Score=226.76 Aligned_cols=156 Identities=26% Similarity=0.373 Sum_probs=128.2
Q ss_pred HHHHHhchhHHHHHHHHHHhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCc-eEEEEec
Q psy16230 128 FVLEALNPFYIFQVFTLCVWFAEA----------YYYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVD-KVTVKRS 194 (292)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~ 194 (292)
+++++.+|+.++++++.++.+..+ .|..+++|+++++++..+.+++++ .+.++++....+ +++|+|+
T Consensus 1 ~~~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViRd 80 (917)
T TIGR01116 1 VLEQFEDLLVRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLRD 80 (917)
T ss_pred ChHHHhCHHHHHHHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEC
Confidence 367899999888888877766543 456778888889999999999988 677888876655 8999998
Q ss_pred CCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeee-EEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccE
Q psy16230 195 KGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTV 273 (292)
Q Consensus 195 ~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~-~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~ 273 (292)
|++++|++++|||||+|.+ ++||+|||||+|++|+ +.||||+|||||.|+.|.+++..++ .....++++++|+||.
T Consensus 81 -g~~~~I~~~~Lv~GDiv~l-~~Gd~IPaD~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~-~~~~~~~~n~l~~GT~ 157 (917)
T TIGR01116 81 -GRWSVIKAKDLVPGDIVEL-AVGDKVPADIRVLSLKTLRVDQSILTGESVSVNKHTESVPDE-RAVNQDKKNMLFSGTL 157 (917)
T ss_pred -CEEEEEEHHHCCCCCEEEE-CCCCEeeccEEEEEecceEEEcccccCCCCcccccccccCcc-ccCcccccceeeeCCE
Confidence 9999999999999999999 7999999999999995 8999999999999999988643221 1123457799999999
Q ss_pred EEEEEEcCCccEEEEEEeC
Q psy16230 274 ILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 274 vi~~~~~~~~~v~avvi~T 292 (292)
+.+|++ .++|++|
T Consensus 158 v~~G~~------~~~V~~t 170 (917)
T TIGR01116 158 VVAGKA------RGVVVRT 170 (917)
T ss_pred EecceE------EEEEEEe
Confidence 998654 6666654
No 17
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=99.89 E-value=1.5e-22 Score=176.89 Aligned_cols=117 Identities=38% Similarity=0.606 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHhhhccCc-e-EEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEe-eeEE
Q psy16230 159 IICMSVFGIVSSVIQTR--QKSLHDTVNTVD-K-VTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQ-GNCI 233 (292)
Q Consensus 159 i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~-v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~-G~~~ 233 (292)
++++++++.+++.++++ ++.++++....+ + ++|+|+ |+++.+++++|+|||+|.+ ++||.+||||++++ |.+.
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~-~~~~~i~~~~L~~GDiI~l-~~g~~vPaD~~ll~~g~~~ 79 (230)
T PF00122_consen 2 ILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRD-GRWQKIPSSELVPGDIIIL-KAGDIVPADGILLESGSAY 79 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEET-TEEEEEEGGGT-TTSEEEE-ETTEBESSEEEEEESSEEE
T ss_pred EEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEec-cccccchHhhccceeeeec-ccccccccCccceeccccc
Confidence 56677777788887766 677777766554 4 899998 9999999999999999999 79999999999999 9999
Q ss_pred eecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230 234 VNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292 (292)
Q Consensus 234 vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T 292 (292)
||||.||||+.|+.|.+.+ .+.++++|+||.+.+|. +.++|++|
T Consensus 80 vd~s~ltGes~pv~k~~~~---------~~~~~~i~~Gs~v~~g~------~~~~Vi~t 123 (230)
T PF00122_consen 80 VDESALTGESEPVKKTPLP---------LNPGNIIFAGSIVVSGW------GIGVVIAT 123 (230)
T ss_dssp EECHHHHSBSSEEEESSSC---------CCTTTEE-TTEEEEEEE------EEEEEEE-
T ss_pred ccccccccccccccccccc---------ccccchhhccccccccc------ccccccee
Confidence 9999999999999999762 25789999999999765 47788876
No 18
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.88 E-value=3e-22 Score=195.43 Aligned_cols=118 Identities=28% Similarity=0.405 Sum_probs=99.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCE
Q psy16230 144 LCVWFAEAYYYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCT 220 (292)
Q Consensus 144 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~ 220 (292)
++.|+... |..+.+++++++++.+++.++++ .+.++++....+ .++|+|+ |+++++++++|+|||+|.+ ++||+
T Consensus 10 ~~~~~~~~-~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~-g~~~~i~~~~l~~GDiv~v-~~G~~ 86 (536)
T TIGR01512 10 LGAVAIGE-YLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRG-GSLEEVAVEELKVGDVVVV-KPGER 86 (536)
T ss_pred HHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEC-CEEEEEEHHHCCCCCEEEE-cCCCE
Confidence 33444444 45557788888888899988887 788888887666 9999998 8999999999999999999 79999
Q ss_pred EeccEEEEeeeEEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEE
Q psy16230 221 LACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQAR 278 (292)
Q Consensus 221 iP~D~~ll~G~~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~ 278 (292)
|||||++++|++.||||+|||||.|+.|++++ .+|+||.+.+|.
T Consensus 87 iP~Dg~ii~g~~~vdes~lTGEs~pv~k~~g~--------------~v~aGt~v~~G~ 130 (536)
T TIGR01512 87 VPVDGVVLSGTSTVDESALTGESVPVEKAPGD--------------EVFAGAINLDGV 130 (536)
T ss_pred eecceEEEeCcEEEEecccCCCCCcEEeCCCC--------------EEEeeeEECCce
Confidence 99999999999999999999999999998654 568888777644
No 19
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.88 E-value=4.8e-22 Score=194.87 Aligned_cols=124 Identities=23% Similarity=0.349 Sum_probs=105.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEcc
Q psy16230 140 QVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPK 216 (292)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~ 216 (292)
..+++++++..+.|..+++++++++++.+++.++++ ++.++++....+ .++|+|++|+++++++++|+|||+|.+ +
T Consensus 5 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~g~~~~i~~~~l~~GDiv~v-~ 83 (556)
T TIGR01525 5 MALATIAAYAMGLVLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGSEEEVPVEELQVGDIVIV-R 83 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEE-C
Confidence 344555555666777888999999999999988887 788888877776 899999844999999999999999999 7
Q ss_pred CCCEEeccEEEEeeeEEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEE
Q psy16230 217 HGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQAR 278 (292)
Q Consensus 217 ~G~~iP~D~~ll~G~~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~ 278 (292)
+||.|||||+|++|++.||||+|||||.|+.|.+++ .+|+||.+.+|.
T Consensus 84 ~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k~~g~--------------~v~aGt~v~~g~ 131 (556)
T TIGR01525 84 PGERIPVDGVVISGESEVDESALTGESMPVEKKEGD--------------EVFAGTINGDGS 131 (556)
T ss_pred CCCEeccceEEEecceEEeehhccCCCCCEecCCcC--------------EEeeceEECCce
Confidence 999999999999999999999999999999998653 568888876644
No 20
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=99.88 E-value=9.1e-22 Score=194.27 Aligned_cols=136 Identities=22% Similarity=0.346 Sum_probs=99.8
Q ss_pred HHhchhHHHHHHHHHHhhhhhHH-----------HHHHHHHHHHHHHHHHHHHH----HH--HHHHHhhhccCc--eEE-
Q psy16230 131 EALNPFYIFQVFTLCVWFAEAYY-----------YYTGAIICMSVFGIVSSVIQ----TR--QKSLHDTVNTVD--KVT- 190 (292)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~~~~----~~--~~~l~~l~~~~~--~v~- 190 (292)
.+.+|+.+.++++.++.+..+.| .+++.+++++++..++..++ ++ ++++++|.+..+ .++
T Consensus 29 ~~~~p~~~il~~aa~ls~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~ 108 (673)
T PRK14010 29 MIKNPIMFVVEVGMLLALGLTIYPDLFHQESVSRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMKARR 108 (673)
T ss_pred HHHChHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEE
Confidence 34577766666655544433322 23555555555555555444 43 677777776654 465
Q ss_pred EEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeeeEEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEec
Q psy16230 191 VKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYC 270 (292)
Q Consensus 191 V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~ 270 (292)
|.|| |++++|++++|+|||+|.+ ++||+|||||++++|.+.||||+|||||.|+.|+++.+ +. .+|+
T Consensus 109 v~rd-g~~~~I~a~eLv~GDiV~v-~~Gd~IPaDG~vieG~~~VDESaLTGES~PV~K~~g~d----------~~-~V~a 175 (673)
T PRK14010 109 IKQD-GSYEMIDASDLKKGHIVRV-ATGEQIPNDGKVIKGLATVDESAITGESAPVIKESGGD----------FD-NVIG 175 (673)
T ss_pred EEeC-CEEEEEEHHHcCCCCEEEE-CCCCcccCCeEEEEcceEEecchhcCCCCceeccCCCc----------cC-eeec
Confidence 5677 9999999999999999999 89999999999999999999999999999999998732 11 2788
Q ss_pred ccEEEEEEE
Q psy16230 271 GTVILQARY 279 (292)
Q Consensus 271 Gt~vi~~~~ 279 (292)
||.+.+|+.
T Consensus 176 GT~v~~G~~ 184 (673)
T PRK14010 176 GTSVASDWL 184 (673)
T ss_pred CceeecceE
Confidence 888877553
No 21
>KOG0203|consensus
Probab=99.88 E-value=6.3e-23 Score=199.07 Aligned_cols=177 Identities=20% Similarity=0.247 Sum_probs=144.8
Q ss_pred CCCCHHHHHhhhcccccceecCCC-CcHHHHHHHHHhchhHHHHHHHHHHhhhhh-------------HHHHHHHHHHHH
Q psy16230 98 NGFTFEEQFMRGIVYGKNEINVPI-QNISSLFVLEALNPFYIFQVFTLCVWFAEA-------------YYYYTGAIICMS 163 (292)
Q Consensus 98 ~GLs~~~~~~r~~~~G~N~i~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~ 163 (292)
+|||.+++.+++..-|+|.+++|+ .+-|..|.+++++-|.++++++.++++... ..+.++++..+.
T Consensus 57 ~Glt~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a~l~~~~y~~~~s~~~~~~~~nly~giiL~~vv 136 (1019)
T KOG0203|consen 57 QGLTSQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGAILCFVAYGIQASTEDDPSDDNLYLGIVLAAVV 136 (1019)
T ss_pred hcccHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCcceEEEEEEEEEE
Confidence 899999999999999999998876 456777999999999888888776665432 223334555566
Q ss_pred HHHHHHHHHHHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeee-EEeecccc
Q psy16230 164 VFGIVSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESML 239 (292)
Q Consensus 164 ~~~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~-~~vdeS~L 239 (292)
++..+..++|+. .+-++......+ .+.|+|| |+...+.+++||+||++.+ +-||+||||.+++++. |.+|+|+|
T Consensus 137 ~vtg~~~~~qe~ks~~im~sF~~l~P~~~~ViRd-g~k~~i~~eelVvGD~v~v-k~GdrVPADiRiis~~g~~vdnssl 214 (1019)
T KOG0203|consen 137 IVTGLFSYYQEAKSSKIMDSFKNLVPQQALVIRD-GEKMTINAEELVVGDLVEV-KGGDRVPADIRIISATGCKVDNSSL 214 (1019)
T ss_pred EEEecCCCccchhhHHHHHHHhccchhhheeeec-ceeEEechhhcccccceee-ccCCcccceeEEEEecceeEecccc
Confidence 677778888887 333444444444 7899998 9999999999999999999 8999999999999996 89999999
Q ss_pred cCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEc
Q psy16230 240 TGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYH 280 (292)
Q Consensus 240 TGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~ 280 (292)
||||.|....+......+ .+..|+.|.+|.+++|++.
T Consensus 215 TGesEP~~~~~~~t~~~~----~Et~Ni~f~st~~veG~~~ 251 (1019)
T KOG0203|consen 215 TGESEPQTRSPEFTHENP----LETRNIAFFSTNCVEGTGR 251 (1019)
T ss_pred ccccCCccCCccccccCc----hhheeeeeeeeEEecceEE
Confidence 999999999887766433 4678999999999998763
No 22
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.5e-22 Score=198.66 Aligned_cols=132 Identities=26% Similarity=0.398 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEE
Q psy16230 151 AYYYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATL 227 (292)
Q Consensus 151 ~~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~l 227 (292)
-||..+.+++++++++.+++.+... .+++++|....+ .++++++||++++++.++|+|||+|.| ++||+||+||++
T Consensus 172 ~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v~~GD~v~V-rpGE~IPvDG~V 250 (713)
T COG2217 172 VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVLV-RPGERIPVDGVV 250 (713)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCcEEEEEHHHCCCCCEEEE-CCCCEecCCeEE
Confidence 3557888888888899888877666 888999998888 888887656689999999999999999 899999999999
Q ss_pred EeeeEEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEe
Q psy16230 228 LQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIR 291 (292)
Q Consensus 228 l~G~~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~ 291 (292)
++|+..||||+|||||+|+.|.+++.+ ..++++-.|...++++..++++.+|.|++
T Consensus 251 ~~G~s~vDeS~iTGEs~PV~k~~Gd~V--------~aGtiN~~G~l~i~vt~~~~dt~la~Ii~ 306 (713)
T COG2217 251 VSGSSSVDESMLTGESLPVEKKPGDEV--------FAGTVNLDGSLTIRVTRVGADTTLARIIR 306 (713)
T ss_pred EeCcEEeecchhhCCCCCEecCCCCEE--------eeeEEECCccEEEEEEecCccCHHHHHHH
Confidence 999999999999999999999999988 68999999999999999999998877654
No 23
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.87 E-value=2.2e-21 Score=191.74 Aligned_cols=136 Identities=21% Similarity=0.239 Sum_probs=102.0
Q ss_pred HHhchhHHHHHHHHHHhhhhh----------H----HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCc--eEEEE
Q psy16230 131 EALNPFYIFQVFTLCVWFAEA----------Y----YYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVD--KVTVK 192 (292)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~----------~----~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~--~v~V~ 192 (292)
++.+|+.+.++++.++.+..+ . +..++.+++.++++.+.+.++++ +++++++.+..+ .++|+
T Consensus 30 ~~~~p~~~vl~~~a~ls~~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vi 109 (679)
T PRK01122 30 QIRNPVMFVVEVGSILTTILTIAPLLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKL 109 (679)
T ss_pred HhhChHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 556777666666554433322 1 11223344445566666667765 777777777654 68999
Q ss_pred ecCCe-EEEEECCCCCCCcEEEEccCCCEEeccEEEEeeeEEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecc
Q psy16230 193 RSKGL-YEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCG 271 (292)
Q Consensus 193 r~~g~-~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~G 271 (292)
|+ |+ ++++++++|+|||+|.+ ++||.|||||++++|.+.||||+|||||.|+.|+++++. +.+|+|
T Consensus 110 r~-g~~~~~V~~~eL~~GDiV~v-~~Gd~IPaDG~vieG~a~VDESaLTGES~PV~K~~G~~~-----------~~V~aG 176 (679)
T PRK01122 110 RE-PGAAEEVPATELRKGDIVLV-EAGEIIPADGEVIEGVASVDESAITGESAPVIRESGGDF-----------SSVTGG 176 (679)
T ss_pred EC-CCEEEEEEHHHcCCCCEEEE-cCCCEEEEEEEEEEccEEEEcccccCCCCceEeCCCCcc-----------CeEEec
Confidence 98 55 89999999999999999 899999999999999999999999999999999987542 238888
Q ss_pred cEEEEEEE
Q psy16230 272 TVILQARY 279 (292)
Q Consensus 272 t~vi~~~~ 279 (292)
|.+.+|+.
T Consensus 177 T~v~~G~~ 184 (679)
T PRK01122 177 TRVLSDWI 184 (679)
T ss_pred eEEEeeeE
Confidence 88887654
No 24
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.87 E-value=3e-21 Score=190.44 Aligned_cols=108 Identities=26% Similarity=0.432 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHhhhccCc--eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeeeEEee
Q psy16230 160 ICMSVFGIVSSVIQTR--QKSLHDTVNTVD--KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVN 235 (292)
Q Consensus 160 ~~~~~~~~~~~~~~~~--~~~l~~l~~~~~--~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~~~vd 235 (292)
++..+++.+.+.++++ ++++++|.+..+ .++|+|+||++++|++++|+|||+|.+ ++||+|||||++++|++.||
T Consensus 74 ~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr~dg~~~~V~~~~L~~GDiV~V-~~Gd~IPaDG~vieG~~~VD 152 (675)
T TIGR01497 74 FITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLRDDGAIDKVPADQLKKGDIVLV-EAGDVIPCDGEVIEGVASVD 152 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeCCEEEEEEHHHCCCCCEEEE-CCCCEEeeeEEEEEccEEEE
Confidence 3445666667767765 777888876654 478886449999999999999999999 89999999999999999999
Q ss_pred cccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEE
Q psy16230 236 ESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARY 279 (292)
Q Consensus 236 eS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~ 279 (292)
||+|||||.||.|++++.. +.+|+||.+.+|+.
T Consensus 153 ESaLTGES~PV~K~~g~~~-----------~~V~aGT~v~~G~~ 185 (675)
T TIGR01497 153 ESAITGESAPVIKESGGDF-----------ASVTGGTRILSDWL 185 (675)
T ss_pred cccccCCCCceeecCCCCc-----------ceeecCcEEEeeEE
Confidence 9999999999999987642 13788888877553
No 25
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.86 E-value=8.3e-22 Score=193.16 Aligned_cols=127 Identities=24% Similarity=0.391 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEE
Q psy16230 151 AYYYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATL 227 (292)
Q Consensus 151 ~~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~l 227 (292)
.||..+.+++++++++.+++.+.++ ++.++++....+ .++++|++|+++++++++|+|||+|.+ ++||+|||||++
T Consensus 52 ~~~~~~~~i~~~~~~g~~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l~~GDii~v-~~Ge~iP~Dg~v 130 (562)
T TIGR01511 52 TFFDASAMLITFILLGRWLEMLAKGRASDALSKLAKLQPSTATLLTKDGSIEEVPVALLQPGDIVKV-LPGEKIPVDGTV 130 (562)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEE-CCCCEecCceEE
Confidence 4777788888888888888876665 788888887776 889998768889999999999999999 899999999999
Q ss_pred EeeeEEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEE
Q psy16230 228 LQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLH 286 (292)
Q Consensus 228 l~G~~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~ 286 (292)
++|++.||||+|||||.|+.|++++.. .+++++..|+..++++..|.++.+
T Consensus 131 ~~g~~~vdes~lTGEs~pv~k~~gd~V--------~aGt~~~~g~~~~~v~~~g~~t~~ 181 (562)
T TIGR01511 131 IEGESEVDESLVTGESLPVPKKVGDPV--------IAGTVNGTGSLVVRATATGEDTTL 181 (562)
T ss_pred EECceEEehHhhcCCCCcEEcCCCCEE--------EeeeEECCceEEEEEEEecCCChH
Confidence 999999999999999999999987654 344444444444555555555443
No 26
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.85 E-value=2.8e-21 Score=194.61 Aligned_cols=127 Identities=24% Similarity=0.241 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEE
Q psy16230 151 AYYYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATL 227 (292)
Q Consensus 151 ~~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~l 227 (292)
+.|..+.+++++++++.+++.++++ ++.++++....+ .++|+|+ |+++++++++|+|||+|.+ ++|++|||||++
T Consensus 204 ~~~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~vir~-g~~~~v~~~~l~~GDiv~v-~~G~~IP~Dg~v 281 (741)
T PRK11033 204 GATAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATRLRD-GEREEVAIADLRPGDVIEV-AAGGRLPADGKL 281 (741)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEC-CEEEEEEHHHCCCCCEEEE-CCCCEEecceEE
Confidence 4455677788888888888888776 788888887777 8999997 9999999999999999999 899999999999
Q ss_pred EeeeEEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEE
Q psy16230 228 LQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHA 287 (292)
Q Consensus 228 l~G~~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~a 287 (292)
++|++.||||+|||||.|+.|.+++.. .+++++..|...+++...|+++.++
T Consensus 282 i~g~~~vdes~lTGEs~Pv~k~~Gd~V--------~aGt~~~~G~~~i~V~~~g~~s~l~ 333 (741)
T PRK11033 282 LSPFASFDESALTGESIPVERATGEKV--------PAGATSVDRLVTLEVLSEPGASAID 333 (741)
T ss_pred EECcEEeecccccCCCCCEecCCCCee--------ccCCEEcCceEEEEEEeccccCHHH
Confidence 999999999999999999999987655 3455555555555555555555433
No 27
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.84 E-value=8.2e-21 Score=194.08 Aligned_cols=127 Identities=23% Similarity=0.336 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEE
Q psy16230 152 YYYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLL 228 (292)
Q Consensus 152 ~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll 228 (292)
||..+.++++++.++.+++.+.++ .+.++++....+ .++++|+ |++++|++++|+|||+|.| ++||+|||||+++
T Consensus 285 ~~~~~~~i~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~-~~~~~v~~~~l~~GD~v~v-~~G~~iP~Dg~v~ 362 (834)
T PRK10671 285 YYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTD-EGEKSVPLADVQPGMLLRL-TTGDRVPVDGEIT 362 (834)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeC-CcEEEEEHHHcCCCCEEEE-cCCCEeeeeEEEE
Confidence 666678888888888888877665 788888888777 8999997 7889999999999999999 8999999999999
Q ss_pred eeeEEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEE
Q psy16230 229 QGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAV 288 (292)
Q Consensus 229 ~G~~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~av 288 (292)
+|++.||||+|||||.|+.|.+++.. .+++++..|+..++++..|+++.++.
T Consensus 363 ~g~~~vdeS~lTGEs~pv~k~~gd~V--------~aGt~~~~G~~~~~v~~~g~~t~l~~ 414 (834)
T PRK10671 363 QGEAWLDEAMLTGEPIPQQKGEGDSV--------HAGTVVQDGSVLFRASAVGSHTTLSR 414 (834)
T ss_pred EceEEEeehhhcCCCCCEecCCCCEE--------EecceecceeEEEEEEEEcCcChHHH
Confidence 99999999999999999999988765 45666666666666666666665544
No 28
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.83 E-value=4.2e-20 Score=192.80 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=108.2
Q ss_pred cccceecCCCCcHH----HHHHHHHhchhHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q psy16230 112 YGKNEINVPIQNIS----SLFVLEALNPFYIFQVFTLCVWFAE-----AYYYYTGAIICMSVFGIVSSVIQTR-QKSLHD 181 (292)
Q Consensus 112 ~G~N~i~~~~~~~~----~ll~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~-~~~l~~ 181 (292)
|..|.+...+.++| ..+++++..++.+++++..++.+.. +.+.+.+.++++++++.+.+.++++ +++.++
T Consensus 1 ~~~N~i~tskY~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~~s~~~~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~ 80 (1057)
T TIGR01652 1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILSPTYRGTSIVPLAFVLIVTAIKEAIEDIRRRRRDK 80 (1057)
T ss_pred CCCCcccCccCcchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCCcCCCCccHhHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56799988887776 4567777777776666665555442 3455556667777788888888888 332222
Q ss_pred hhccCceEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEe-----eeEEeecccccCCCcceeeccCC
Q psy16230 182 TVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQ-----GNCIVNESMLTGESVPVMKTALP 252 (292)
Q Consensus 182 l~~~~~~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~-----G~~~vdeS~LTGES~pv~K~~~~ 252 (292)
......++|+|++|+++++++++|+|||+|.+ ++||.+|||++|++ |.|.||||.|||||.|+.|.+.+
T Consensus 81 -~~n~~~~~v~~~~~~~~~i~~~~l~~GDiv~l-~~g~~iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~ 154 (1057)
T TIGR01652 81 -EVNNRLTEVLEGHGQFVEIPWKDLRVGDIVKV-KKDERIPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALE 154 (1057)
T ss_pred -HHhCcEEEEECCCCcEEEeeeecccCCCEEEE-cCCCcccceEEEEeccCCCceEEEEeeccCCeecceEeecch
Confidence 22234899999657999999999999999999 89999999999997 77999999999999999998754
No 29
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.79 E-value=3.4e-19 Score=172.77 Aligned_cols=113 Identities=35% Similarity=0.589 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhhc--cCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeeeEEeec
Q psy16230 162 MSVFGIVSSVIQTR--QKSLHDTVN--TVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNE 236 (292)
Q Consensus 162 ~~~~~~~~~~~~~~--~~~l~~l~~--~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~~~vde 236 (292)
+.+++.+++.++++ .+.++++.. ..+ .++|+|+ | ++++++++|+|||+|.+ ++||.|||||++++|++.|||
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~-g-~~~V~~~~l~~GDiv~v-~~G~~iP~Dg~vl~g~~~vde 81 (499)
T TIGR01494 5 LVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRN-G-WKEIPASDLVPGDIVLV-KSGEIVPADGVLLSGSCFVDE 81 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEC-C-eEEEEHHHCCCCCEEEE-CCCCEeeeeEEEEEccEEEEc
Confidence 34445555555554 555555554 444 8999997 7 89999999999999999 799999999999999999999
Q ss_pred ccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccE
Q psy16230 237 SMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYL 285 (292)
Q Consensus 237 S~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v 285 (292)
|+|||||.|+.|.+++.. ++++++++|+..++.+..+.++.
T Consensus 82 s~LTGEs~pv~k~~g~~v--------~~gs~~~~G~~~~~v~~~~~~s~ 122 (499)
T TIGR01494 82 SNLTGESVPVLKTAGDAV--------FAGTYVFNGTLIVVVSATGPNTF 122 (499)
T ss_pred ccccCCCCCeeeccCCcc--------ccCcEEeccEEEEEEEEeccccH
Confidence 999999999999998766 68899999999988887766543
No 30
>KOG0207|consensus
Probab=99.79 E-value=1.3e-19 Score=178.14 Aligned_cols=130 Identities=23% Similarity=0.374 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCc-eEEEEecCCe-EEEEECCCCCCCcEEEEccCCCEEeccEEE
Q psy16230 152 YYYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGL-YEEVPTTHLVPGDIIVIPKHGCTLACDATL 227 (292)
Q Consensus 152 ~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~-~~~i~~~~Lv~GDii~i~~~G~~iP~D~~l 227 (292)
+|..+.+++.++.++.+++...+. ...+.+|....+ ++.++.+ |+ .++|+.+.+.+||+|.| .+|++||+||++
T Consensus 340 fFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii~~-g~~e~eI~v~lvq~gdivkV-~pG~kiPvDG~V 417 (951)
T KOG0207|consen 340 FFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKATIIED-GSEEKEIPVDLVQVGDIVKV-KPGEKIPVDGVV 417 (951)
T ss_pred hccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccceEeec-CCcceEeeeeeeccCCEEEE-CCCCccccccEE
Confidence 566667777788888888887776 788888888877 8888887 54 78999999999999999 899999999999
Q ss_pred EeeeEEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEe
Q psy16230 228 LQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIR 291 (292)
Q Consensus 228 l~G~~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~ 291 (292)
++|++.||||++||||+||.|++++.+ ..++++..|+..++++..|+++++|.+++
T Consensus 418 v~Gss~VDEs~iTGEs~PV~Kk~gs~V--------iaGsiN~nG~l~VkaT~~g~dttla~Ivk 473 (951)
T KOG0207|consen 418 VDGSSEVDESLITGESMPVPKKKGSTV--------IAGSINLNGTLLVKATKVGGDTTLAQIVK 473 (951)
T ss_pred EeCceeechhhccCCceecccCCCCee--------eeeeecCCceEEEEEEeccccchHHHHHH
Confidence 999999999999999999999999988 58899999999999999999999887653
No 31
>PLN03190 aminophospholipid translocase; Provisional
Probab=99.74 E-value=5.1e-17 Score=169.70 Aligned_cols=140 Identities=19% Similarity=0.191 Sum_probs=108.7
Q ss_pred ccccceecCCCCcHHHHHHHHHhchh----H-HHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy16230 111 VYGKNEINVPIQNISSLFVLEALNPF----Y-IFQVFTLCVWFA----EAYYYYTGAIICMSVFGIVSSVIQTR-QKSLH 180 (292)
Q Consensus 111 ~~G~N~i~~~~~~~~~ll~~~~~~~~----~-~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~l~ 180 (292)
.|..|.+...+.++|.++.+.++..| + +|++++++.++- .+.+...+.++++++++.+.+.++++ +.+-+
T Consensus 86 ~f~~N~i~TsKYt~~tFlP~~L~eQF~r~aN~YFL~I~ilq~ip~~s~~~~~t~~~PL~~vl~v~~ike~~Ed~~r~k~d 165 (1178)
T PLN03190 86 EFAGNSIRTAKYSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLAVFGRGASILPLAFVLLVTAVKDAYEDWRRHRSD 165 (1178)
T ss_pred cCCCCeeeccccccHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 59999999999999999777666655 3 344444443321 23455566777777788888888877 33333
Q ss_pred hhhccCceEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEe-----eeEEeecccccCCCcceeeccCCC
Q psy16230 181 DTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQ-----GNCIVNESMLTGESVPVMKTALPS 253 (292)
Q Consensus 181 ~l~~~~~~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~-----G~~~vdeS~LTGES~pv~K~~~~~ 253 (292)
+. .+...++|+|+ |.++++++++|+|||+|.+ ++||.+|||++|++ |.|.||+|.|||||.|+.|.+++.
T Consensus 166 ~~-~N~~~~~v~~~-~~~~~i~~~~i~vGDiv~v-~~ge~iPaD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~ 240 (1178)
T PLN03190 166 RI-ENNRLAWVLVD-DQFQEKKWKDIRVGEIIKI-QANDTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQE 240 (1178)
T ss_pred Hh-hcCcEEEEEEC-CeEEEEeHHHCCCCCEEEE-CCCCEeeeeEEEEeccCCCceEEEEccccCCeeeeeEecccch
Confidence 32 22338899997 8999999999999999999 89999999999997 889999999999999999998754
No 32
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.57 E-value=5.8e-15 Score=137.72 Aligned_cols=77 Identities=32% Similarity=0.525 Sum_probs=68.6
Q ss_pred eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeeeEEeecccccCCCcceeeccCCCCCCCCCcccCCCcE
Q psy16230 188 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHT 267 (292)
Q Consensus 188 ~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~ 267 (292)
.++.++++|.++.+++.+|..||+|.+ .+||.||+||.+++|.+.||||.+||||.||.|+++.+. +-
T Consensus 105 ~A~~l~~~g~~~~v~st~Lk~gdiV~V-~age~IP~DGeVIeG~asVdESAITGESaPViresGgD~-----------ss 172 (681)
T COG2216 105 IARLLRADGSIEMVPATELKKGDIVLV-EAGEIIPSDGEVIEGVASVDESAITGESAPVIRESGGDF-----------SS 172 (681)
T ss_pred HHHHhcCCCCeeeccccccccCCEEEE-ecCCCccCCCeEEeeeeecchhhccCCCcceeeccCCCc-----------cc
Confidence 667788779999999999999999999 799999999999999999999999999999999998643 22
Q ss_pred EecccEEEE
Q psy16230 268 LYCGTVILQ 276 (292)
Q Consensus 268 l~~Gt~vi~ 276 (292)
+-.||.|++
T Consensus 173 VtGgT~v~S 181 (681)
T COG2216 173 VTGGTRVLS 181 (681)
T ss_pred ccCCcEEee
Confidence 677888764
No 33
>KOG0208|consensus
Probab=99.55 E-value=1.5e-15 Score=150.27 Aligned_cols=70 Identities=44% Similarity=0.610 Sum_probs=63.4
Q ss_pred CCCccccccccccCCCCCC-----CCCccccceeEEEeceEEEEeeecCCeeeEEEeeeeccceeeEEEEeceEE
Q psy16230 1 MLTGESVPVMKTALPSQSD-----FYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTELKVINVKKLMY 70 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~-----~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~r~f~~r~~ry 70 (292)
|||||||||+|+|+|.... .++.+.++||+|||||+++|+|.+.+.+++|.+.|||+++.++-+.|++.|
T Consensus 300 mLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g~~v~a~V~RTGF~T~KGqLVRsily 374 (1140)
T KOG0208|consen 300 MLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLGGPVLAMVLRTGFSTTKGQLVRSILY 374 (1140)
T ss_pred cccCCcccccccCCccccccCcCeeechhhcCcceeeccceEEEeecCCCCceEEEEEeccccccccHHHHhhcC
Confidence 9999999999999983221 466788999999999999999999999999999999999999999998875
No 34
>KOG0210|consensus
Probab=99.17 E-value=3.1e-10 Score=109.56 Aligned_cols=143 Identities=20% Similarity=0.344 Sum_probs=84.4
Q ss_pred hhhcccccceecCCCCcHH---HHHHHHHhchh-HHHHHHHHHHhhh----hhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16230 107 MRGIVYGKNEINVPIQNIS---SLFVLEALNPF-YIFQVFTLCVWFA----EAY-YYYTGAIICMSVFGIVSSVIQTRQK 177 (292)
Q Consensus 107 ~r~~~~G~N~i~~~~~~~~---~ll~~~~~~~~-~~~~~~~~~~~~~----~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 177 (292)
.++.+|-+|.+...+..++ -.++.+.|..| ++|.++..+..+. .+| ..+...+.+++.++.+.+..+..++
T Consensus 74 ~~~~r~~pn~v~nqKyn~~tF~p~vl~~qF~~F~nlyfll~alsQ~ip~~~ig~l~ty~~pl~fvl~itl~keavdd~~r 153 (1051)
T KOG0210|consen 74 YRRRRFPPNEVRNQKYNIFTFVPAVLFEQFKFFLNLYFLLVALSQLIPALKIGYLSTYWGPLGFVLTITLIKEAVDDLKR 153 (1051)
T ss_pred cccccCCCchhhhcccceEEeeHHHHHHHHHHHHHHHHHHHHHHhhCchheecchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788999987654433 33333333333 3333222222111 111 1222333444444444444444422
Q ss_pred HHHhhhccCceEEEE-ecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEE-----eeeEEeecccccCCCcceeeccC
Q psy16230 178 SLHDTVNTVDKVTVK-RSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLL-----QGNCIVNESMLTGESVPVMKTAL 251 (292)
Q Consensus 178 ~l~~l~~~~~~v~V~-r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll-----~G~~~vdeS~LTGES~pv~K~~~ 251 (292)
..++...+....+++ |+ |... .++++|.+||+|.+ +.+++||||.+++ +|+|.+-.-.|.||..-..|-|.
T Consensus 154 ~~rd~~~Nse~y~~ltr~-~~~~-~~Ss~i~vGDvi~v-~K~~RVPADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~v 230 (1051)
T KOG0210|consen 154 RRRDRELNSEKYTKLTRD-GTRR-EPSSDIKVGDVIIV-HKDERVPADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPV 230 (1051)
T ss_pred HHhhhhhhhhhheeeccC-Cccc-ccccccccccEEEE-ecCCcCCcceEEEEccCCCCceEEeccccCCcccceeeccc
Confidence 222222222234444 54 5443 38999999999999 7999999999999 57899999999999998888776
Q ss_pred C
Q psy16230 252 P 252 (292)
Q Consensus 252 ~ 252 (292)
|
T Consensus 231 p 231 (1051)
T KOG0210|consen 231 P 231 (1051)
T ss_pred h
Confidence 5
No 35
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=98.96 E-value=1e-09 Score=77.72 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=48.9
Q ss_pred hhhhhhc--CCCCHHHHHhhhcccccceec-CCCCcHHHHHHHHHhchhHHHHHHHHHHh
Q psy16230 91 NSQLHQF--NGFTFEEQFMRGIVYGKNEIN-VPIQNISSLFVLEALNPFYIFQVFTLCVW 147 (292)
Q Consensus 91 ~~~~~~~--~GLs~~~~~~r~~~~G~N~i~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 147 (292)
+..++++ +||+.+|+++|++.||+|+++ .+.+++|.++++++.+||.++++++++++
T Consensus 10 ~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aailS 69 (69)
T PF00690_consen 10 LKRLNTSSSQGLSSEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAILS 69 (69)
T ss_dssp HHHHTTBTSSBBTHHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHCcCCCCCCCHHHHHHHHHhcccccccccccCcHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 4456544 999999999999999999995 55799999999999999999988887653
No 36
>KOG0206|consensus
Probab=98.96 E-value=1.2e-09 Score=112.67 Aligned_cols=144 Identities=20% Similarity=0.265 Sum_probs=108.3
Q ss_pred hhcccccceecCCCCcHHHHHHHHHhchh----HHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy16230 108 RGIVYGKNEINVPIQNISSLFVLEALNPF----YIFQVFTLCVWFA----EAYYYYTGAIICMSVFGIVSSVIQTR-QKS 178 (292)
Q Consensus 108 r~~~~G~N~i~~~~~~~~~ll~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~ 178 (292)
+...|-.|.+...+.+++.++-++++..| .+|.++.+++.+. ...+...+.+++++.++++-+.++.. +.+
T Consensus 28 ~~~~~~~N~i~TtKYt~~tFlPk~l~eQf~r~aN~yFl~~~il~~ip~~~~~~~~~~~pl~~vl~~t~iKd~~eD~rR~~ 107 (1151)
T KOG0206|consen 28 PQRKYCDNRISTTKYTLFTFLPKNLFEQFHRVANLYFLFIAILQFIPLSPFNPYTTLVPLLFVLGITAIKDAIEDYRRHK 107 (1151)
T ss_pred hhccccCCeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCcccccCccceeeceeeeehHHHHHHHHhhhhhhh
Confidence 44579999999999888888766666655 4444443333322 34455667777888888888888887 333
Q ss_pred HHhhhccCceEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEE-----eeeEEeecccccCCCcceeeccCCC
Q psy16230 179 LHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLL-----QGNCIVNESMLTGESVPVMKTALPS 253 (292)
Q Consensus 179 l~~l~~~~~~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll-----~G~~~vdeS~LTGES~pv~K~~~~~ 253 (292)
.++ .-++.+++|.|+++.+.+..++++.+||+|.+ ..++.+|||.+|+ +|.|.|+.++|.||.....|...+.
T Consensus 108 ~D~-~iN~~~~~v~~~~~~~~~~~wk~~~vGd~v~v-~~~~~~paD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~ 185 (1151)
T KOG0206|consen 108 QDK-EVNNRKVEVLRGDGCFVEKKWKDVRVGDIVRV-EKDEFVPADLLLLSSSDEDGICYVETANLDGETNLKVKQALEC 185 (1151)
T ss_pred ccH-HhhcceeEEecCCceeeeeccceeeeeeEEEe-ccCCccccceEEecCCCCCceeEEEEeecCCccccceeeehhh
Confidence 332 32334888998644489999999999999999 7999999999999 4569999999999999999887553
No 37
>KOG0209|consensus
Probab=98.91 E-value=1.2e-09 Score=107.15 Aligned_cols=70 Identities=33% Similarity=0.424 Sum_probs=56.8
Q ss_pred CCCccccccccccCCCCCC--CCCcccc-ceeEEEeceEEEEeeec-------CCeeeEEEeeeeccceeeEEEEeceEE
Q psy16230 1 MLTGESVPVMKTALPSQSD--FYNEKED-VNHTLYCGTVILQARYH-------GDEYLHAVVIRTEVTELKVINVKKLMY 70 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~--~~~~~~~-~~~~l~~gt~i~q~~~~-------g~~~v~a~~~~tg~~~~r~f~~r~~ry 70 (292)
||||||+|..|.|+.+.+. .++.+.+ +.|+||.||+|+|...+ .|..|.|.+.|||+.+-.+-+.|.+.|
T Consensus 305 MLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~VlrTGFeTSQGkLvRtilf 384 (1160)
T KOG0209|consen 305 MLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYVLRTGFETSQGKLVRTILF 384 (1160)
T ss_pred hhcCCCccccccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEEEeccccccCCceeeeEEe
Confidence 9999999999999998764 5666654 88999999999998543 478899999999988765555555554
No 38
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=98.87 E-value=3.4e-09 Score=73.88 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=47.1
Q ss_pred CCCCHHHHHhhhcccccceecCCC-CcHHHHHHHHHhchhHHHHHHHHHHhhhh
Q psy16230 98 NGFTFEEQFMRGIVYGKNEINVPI-QNISSLFVLEALNPFYIFQVFTLCVWFAE 150 (292)
Q Consensus 98 ~GLs~~~~~~r~~~~G~N~i~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 150 (292)
.||+.+|+++|++.||+|++..+. +++|.++++++.+|+.+++++++++++..
T Consensus 9 ~GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~~ 62 (64)
T smart00831 9 SGLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSALL 62 (64)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 599999999999999999998764 89999999999999999888887766543
No 39
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=98.48 E-value=8.5e-08 Score=100.89 Aligned_cols=69 Identities=39% Similarity=0.535 Sum_probs=55.5
Q ss_pred CCCccccccccccCCCC---C-CCCCccccceeEEEeceEEEEeeecC-CeeeEEEeeeeccceeeEEEEeceE
Q psy16230 1 MLTGESVPVMKTALPSQ---S-DFYNEKEDVNHTLYCGTVILQARYHG-DEYLHAVVIRTEVTELKVINVKKLM 69 (292)
Q Consensus 1 mltges~pv~k~~~~~~---~-~~~~~~~~~~~~l~~gt~i~q~~~~g-~~~v~a~~~~tg~~~~r~f~~r~~r 69 (292)
||||||+||.|.|+++. + ..+..+.+++|+||+||+++|++.+. +..+.+.+.+||..+.++-..|.+.
T Consensus 280 ~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T~~G~i~~~i~ 353 (1054)
T TIGR01657 280 MLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFSTSKGQLVRSIL 353 (1054)
T ss_pred cccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccccchHHHHHhh
Confidence 79999999999998751 1 24455668899999999999998764 4579999999999988776666554
No 40
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.001 Score=69.36 Aligned_cols=54 Identities=33% Similarity=0.447 Sum_probs=40.9
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeecccee
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTEL 60 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~ 60 (292)
||||||+||.|.+.+.....-...-..+|++|+||.+.+.+ +.+.+..||..+-
T Consensus 190 ~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~------~~giVvaTG~~T~ 243 (917)
T COG0474 190 ALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGR------AKGIVVATGFETE 243 (917)
T ss_pred cccCCCcchhccccccccccccccCCccceEEeCCEEEcce------EEEEEEEEcCccH
Confidence 79999999999998776421111114589999999999887 6678888887554
No 41
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.85 E-value=0.0011 Score=70.22 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=38.3
Q ss_pred CCCccccccccccCCCCC-CCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeecccee
Q psy16230 1 MLTGESVPVMKTALPSQS-DFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTEL 60 (292)
Q Consensus 1 mltges~pv~k~~~~~~~-~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~ 60 (292)
||||||.||.|.+.+... ....+..+..|++|+||.+.+-+ +++.+..||.++.
T Consensus 168 ~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~------g~~vVvatG~~T~ 222 (1053)
T TIGR01523 168 LLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGR------AKGICIATALNSE 222 (1053)
T ss_pred hhcCCCCceeccccccccccccCCcccCCCccccCceEEeee------EEEEEEEecCccH
Confidence 799999999998754211 11122335679999999999743 6678888886654
No 42
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=96.65 E-value=0.0025 Score=66.41 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=38.3
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeecccee
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTEL 60 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~ 60 (292)
||||||.||.|.|-+..........++.|.+|+||.+.+- .+.+.+..+|..+.
T Consensus 167 ~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G------~~~~~V~~tG~~T~ 220 (884)
T TIGR01522 167 NLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCG------HGKGIVVGTGSNTE 220 (884)
T ss_pred cccCCCcceecccccccccccccccccCceEEeCCEEEee------eEEEEEEEecCccH
Confidence 7999999999998653322222233567999999999753 35667778887654
No 43
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=96.36 E-value=0.004 Score=64.91 Aligned_cols=53 Identities=34% Similarity=0.411 Sum_probs=38.3
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeecccee
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTEL 60 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~ 60 (292)
||||||.||.|.+-+..+.... ....++.+|+||.+.+- .+.+.+..+|..+.
T Consensus 215 ~LTGES~PV~K~~~~~~~~~~~-~~~~~n~vfaGT~V~~G------~~~~vV~atG~~T~ 267 (902)
T PRK10517 215 SLTGESLPVEKFATTRQPEHSN-PLECDTLCFMGTNVVSG------TAQAVVIATGANTW 267 (902)
T ss_pred CcCCCCCceecccccccccccC-ccccccceeeCceEeee------eEEEEEEEeccccH
Confidence 7999999999998653322111 12357899999999974 36678888887665
No 44
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=96.36 E-value=0.0042 Score=65.03 Aligned_cols=53 Identities=30% Similarity=0.431 Sum_probs=38.5
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeecccee
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTEL 60 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~ 60 (292)
||||||.||.|.|.+..+.... ..++++++|.||.+.+- .+.+.+..+|..+.
T Consensus 123 ~LTGES~pv~K~~~~~~~~~~~-~~~~~n~l~~GT~v~~G------~~~~~V~~tG~~T~ 175 (917)
T TIGR01116 123 ILTGESVSVNKHTESVPDERAV-NQDKKNMLFSGTLVVAG------KARGVVVRTGMSTE 175 (917)
T ss_pred cccCCCCcccccccccCccccC-cccccceeeeCCEEecc------eEEEEEEEeCCCCH
Confidence 7999999999998643322211 23467999999999973 36678888887665
No 45
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=95.98 E-value=0.0081 Score=62.48 Aligned_cols=53 Identities=30% Similarity=0.327 Sum_probs=37.2
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeecccee
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTEL 60 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~ 60 (292)
||||||.||.|.+-...+.. ..-.+..+.+|+||.+.+- .+.+.+..+|..+.
T Consensus 181 ~LTGES~PV~K~~~~~~~~~-~~~~~~~n~vfaGT~v~~G------~~~~~V~~tG~~T~ 233 (867)
T TIGR01524 181 ALTGESLPVEKFVEDKRARD-PEILERENLCFMGTNVLSG------HAQAVVLATGSSTW 233 (867)
T ss_pred cccCCCCcccccCCcccccc-ccccccccceecCCeEEEe------EEEEEEEEEcCccH
Confidence 79999999999985432111 1112357899999999974 46667888887664
No 46
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=95.78 E-value=0.013 Score=61.28 Aligned_cols=54 Identities=28% Similarity=0.320 Sum_probs=36.5
Q ss_pred CCCccccccccccCCCC------C---CCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeecccee
Q psy16230 1 MLTGESVPVMKTALPSQ------S---DFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTEL 60 (292)
Q Consensus 1 mltges~pv~k~~~~~~------~---~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~ 60 (292)
+|||||.||.|.+.+.. + .....-.+..+.+|+||.+.+- .+.+.+..+|..+.
T Consensus 204 ~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G------~~~~~V~atG~~T~ 266 (903)
T PRK15122 204 VLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSG------TATAVVVATGSRTY 266 (903)
T ss_pred ccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEee------eEEEEEEEeccccH
Confidence 69999999999974310 0 0001112457899999999973 35667888887664
No 47
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=95.44 E-value=0.016 Score=60.90 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=33.3
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeecccee
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTEL 60 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~ 60 (292)
||||||.||.|.+- ..+++|+||.+.+-+ +.+.+..+|..+.
T Consensus 216 ~LTGES~pv~K~~~------------~~n~v~~GT~v~~G~------~~~iV~~tG~~T~ 257 (941)
T TIGR01517 216 SITGESDPIKKGAP------------KDSFLLSGTVVNEGS------GRMLVTAVGVNSF 257 (941)
T ss_pred ccCCCCCcccccCC------------CCceEEeCCeEEeeE------EEEEEEEeCCCcH
Confidence 79999999999862 246999999998864 5667778887664
No 48
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=95.36 E-value=0.02 Score=60.49 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=35.8
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeecccee
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTEL 60 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~ 60 (292)
+|||||.||.|.|-......+ ..+|++|.||.+++- .+.+.+..+|..+.
T Consensus 191 ~LTGES~pv~K~~~~~~~~~~----~~~n~l~~Gt~v~~G------~~~~~V~~tG~~T~ 240 (997)
T TIGR01106 191 SLTGESEPQTRSPEFTHENPL----ETRNIAFFSTNCVEG------TARGIVVNTGDRTV 240 (997)
T ss_pred ccCCCCCceeccCCCcccCcc----ccCCeEEeccEeeee------eEEEEEEEccccch
Confidence 699999999998743222122 357899999999853 35667778887654
No 49
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=95.01 E-value=0.017 Score=50.15 Aligned_cols=44 Identities=34% Similarity=0.505 Sum_probs=33.0
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeeccce
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTE 59 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~ 59 (292)
+||||+.|+.|.|. .-+..+++|.||.+.. +.+.+.+.++|..+
T Consensus 84 ~ltGes~pv~k~~~---------~~~~~~~i~~Gs~v~~------g~~~~~Vi~tG~~t 127 (230)
T PF00122_consen 84 ALTGESEPVKKTPL---------PLNPGNIIFAGSIVVS------GWGIGVVIATGSDT 127 (230)
T ss_dssp HHHSBSSEEEESSS---------CCCTTTEE-TTEEEEE------EEEEEEEEE-GGGS
T ss_pred cccccccccccccc---------cccccchhhccccccc------cccccccceeeecc
Confidence 37999999999998 3456899999999982 34667778887655
No 50
>KOG0202|consensus
Probab=93.44 E-value=0.1 Score=52.93 Aligned_cols=54 Identities=30% Similarity=0.407 Sum_probs=34.0
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeecccee
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTEL 60 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~ 60 (292)
.|||||.||.|..=+-....-..-.++++++|+||-|..-| ++..+.-||.++-
T Consensus 165 ~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~------a~GIVi~TG~nTe 218 (972)
T KOG0202|consen 165 SLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGR------AKGIVIGTGLNTE 218 (972)
T ss_pred cccCCcccccccCccccCCCCCccccceeeEeecceeecCc------eeEEEEeccccch
Confidence 49999999999543221111111235799999999887544 3445666665543
No 51
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=92.86 E-value=0.094 Score=53.86 Aligned_cols=40 Identities=38% Similarity=0.521 Sum_probs=30.9
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeecccee
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTEL 60 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~ 60 (292)
||||||.||.|.+ .+.+|+||.+.+ ....+.+.++|..+.
T Consensus 142 ~LTGES~PV~K~~--------------~~~v~aGT~v~~------G~~~~~V~~tG~~T~ 181 (755)
T TIGR01647 142 ALTGESLPVTKKT--------------GDIAYSGSTVKQ------GEAEAVVTATGMNTF 181 (755)
T ss_pred cccCCccceEecc--------------CCeeeccCEEEc------cEEEEEEEEcCCccH
Confidence 6999999999974 257999999975 345667778886554
No 52
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=92.49 E-value=0.13 Score=50.82 Aligned_cols=39 Identities=36% Similarity=0.544 Sum_probs=28.4
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeeccce
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTE 59 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~ 59 (292)
||||||.||.|.| -+.+|+||.+.+ ..+.+.+.++|..+
T Consensus 104 ~lTGEs~pv~k~~--------------g~~v~aGt~v~~------G~~~~~V~~~g~~t 142 (536)
T TIGR01512 104 ALTGESVPVEKAP--------------GDEVFAGAINLD------GVLTIVVTKLPADS 142 (536)
T ss_pred ccCCCCCcEEeCC--------------CCEEEeeeEECC------ceEEEEEEEecccc
Confidence 7999999999976 136999998753 34555666666544
No 53
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=91.49 E-value=0.24 Score=50.09 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=28.0
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeeccc
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVT 58 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~ 58 (292)
+|||||.||.|.+= ..+..+|.||.+.+- .+...+..+|..
T Consensus 154 aLTGES~PV~K~~G-----------~~~~~V~aGT~v~~G------~~~i~Vta~g~~ 194 (679)
T PRK01122 154 AITGESAPVIRESG-----------GDFSSVTGGTRVLSD------WIVIRITANPGE 194 (679)
T ss_pred cccCCCCceEeCCC-----------CccCeEEeceEEEee------eEEEEEEEeccc
Confidence 69999999999872 123449999998853 234455555543
No 54
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=91.45 E-value=0.2 Score=49.56 Aligned_cols=39 Identities=33% Similarity=0.427 Sum_probs=28.7
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeeccce
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTE 59 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~ 59 (292)
||||||.|+.|.+ .+.+|+||.+. +..+.+.+.++|..+
T Consensus 105 ~lTGEs~pv~k~~--------------g~~v~aGt~v~------~g~~~~~v~~~g~~t 143 (556)
T TIGR01525 105 ALTGESMPVEKKE--------------GDEVFAGTING------DGSLTIRVTKLGEDS 143 (556)
T ss_pred hccCCCCCEecCC--------------cCEEeeceEEC------CceEEEEEEEecccC
Confidence 6999999999975 25799999984 344555666666544
No 55
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=90.78 E-value=0.22 Score=49.43 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=28.9
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeecccee
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTEL 60 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~~ 60 (292)
+|||||.||.|.+ .+.+|.||.+.+ ..+...+.++|..+.
T Consensus 141 ~lTGEs~pv~k~~--------------gd~V~aGt~~~~------g~~~~~v~~~g~~t~ 180 (562)
T TIGR01511 141 LVTGESLPVPKKV--------------GDPVIAGTVNGT------GSLVVRATATGEDTT 180 (562)
T ss_pred hhcCCCCcEEcCC--------------CCEEEeeeEECC------ceEEEEEEEecCCCh
Confidence 6999999999986 246999997763 345556666665443
No 56
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=90.54 E-value=0.24 Score=50.05 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=28.5
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeeccc
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVT 58 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~ 58 (292)
||||||.||.|.+= ..+..+|.||.+.+-+ +...+..+|..
T Consensus 154 aLTGES~PV~K~~g-----------~d~~~V~aGT~v~~G~------~~i~Vta~g~~ 194 (673)
T PRK14010 154 AITGESAPVIKESG-----------GDFDNVIGGTSVASDW------LEVEITSEPGH 194 (673)
T ss_pred hhcCCCCceeccCC-----------CccCeeecCceeecce------EEEEEEEeccc
Confidence 69999999999873 1133499999987643 44455565543
No 57
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=88.36 E-value=0.46 Score=46.36 Aligned_cols=34 Identities=41% Similarity=0.489 Sum_probs=24.2
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeee
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARY 42 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~ 42 (292)
+|||||.|+.|.|- ..-++.+..+.|+..+++..
T Consensus 83 ~LTGEs~pv~k~~g--------~~v~~gs~~~~G~~~~~v~~ 116 (499)
T TIGR01494 83 NLTGESVPVLKTAG--------DAVFAGTYVFNGTLIVVVSA 116 (499)
T ss_pred cccCCCCCeeeccC--------CccccCcEEeccEEEEEEEE
Confidence 69999999999881 12245677777777765443
No 58
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=86.97 E-value=0.84 Score=46.23 Aligned_cols=42 Identities=29% Similarity=0.314 Sum_probs=28.1
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeeccce
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTE 59 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~~ 59 (292)
+|||||.||.|.+=.+ ...+|+||.+..- .+...+..+|..+
T Consensus 155 aLTGES~PV~K~~g~~-----------~~~V~aGT~v~~G------~~~i~Vt~~g~~S 196 (675)
T TIGR01497 155 AITGESAPVIKESGGD-----------FASVTGGTRILSD------WLVVECTANPGET 196 (675)
T ss_pred cccCCCCceeecCCCC-----------cceeecCcEEEee------EEEEEEEEecccC
Confidence 6999999999997321 1238999998753 3444555555433
No 59
>PRK10671 copA copper exporting ATPase; Provisional
Probab=83.86 E-value=1 Score=46.85 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=27.1
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeeeccc
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVT 58 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~tg~~ 58 (292)
||||||.||.|.+= ..+|.||.+.+ ..+...+.++|..
T Consensus 372 ~lTGEs~pv~k~~g--------------d~V~aGt~~~~------G~~~~~v~~~g~~ 409 (834)
T PRK10671 372 MLTGEPIPQQKGEG--------------DSVHAGTVVQD------GSVLFRASAVGSH 409 (834)
T ss_pred hhcCCCCCEecCCC--------------CEEEecceecc------eeEEEEEEEEcCc
Confidence 79999999999872 25899998864 3344555566543
No 60
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=83.24 E-value=0.44 Score=48.46 Aligned_cols=13 Identities=69% Similarity=0.963 Sum_probs=12.2
Q ss_pred CCCcccccccccc
Q psy16230 1 MLTGESVPVMKTA 13 (292)
Q Consensus 1 mltges~pv~k~~ 13 (292)
||||||+||.|.|
T Consensus 261 ~iTGEs~PV~k~~ 273 (713)
T COG2217 261 MLTGESLPVEKKP 273 (713)
T ss_pred hhhCCCCCEecCC
Confidence 7999999999987
No 61
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=80.43 E-value=1.3 Score=45.48 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=20.0
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEE
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQ 39 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q 39 (292)
||||||.||.|.+= ..+|.||.+.+
T Consensus 292 ~lTGEs~Pv~k~~G--------------d~V~aGt~~~~ 316 (741)
T PRK11033 292 ALTGESIPVERATG--------------EKVPAGATSVD 316 (741)
T ss_pred cccCCCCCEecCCC--------------CeeccCCEEcC
Confidence 69999999999761 24888988754
No 62
>KOG4383|consensus
Probab=77.79 E-value=2.6 Score=42.29 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=34.8
Q ss_pred EEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEee
Q psy16230 190 TVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG 230 (292)
Q Consensus 190 ~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G 230 (292)
+.+|| |...+++..-||.||||-+ ++|+.-||.+.=+++
T Consensus 159 ~afRD-Ghlm~lP~~LLVeGDiIa~-RPGQeafan~~g~~d 197 (1354)
T KOG4383|consen 159 SAFRD-GHLMELPRILLVEGDIIAF-RPGQEAFANCEGFDD 197 (1354)
T ss_pred HHhcc-CeeeecceeEEEeccEEEe-cCCccccccccccCC
Confidence 35687 9999999999999999999 899999998877766
No 63
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=77.65 E-value=1 Score=32.72 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=17.6
Q ss_pred ECCCCCCCcEEEEccCCCEEec
Q psy16230 202 PTTHLVPGDIIVIPKHGCTLAC 223 (292)
Q Consensus 202 ~~~~Lv~GDii~i~~~G~~iP~ 223 (292)
...+|.+||.|.|.++||.||-
T Consensus 46 ~~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 46 KELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HHTT-BBT-EEEEEEETTTEEE
T ss_pred HHcCCCCCCEEEEEECCCccce
Confidence 4578999999999899999995
No 64
>KOG0205|consensus
Probab=69.95 E-value=3.3 Score=41.42 Aligned_cols=12 Identities=67% Similarity=0.952 Sum_probs=11.2
Q ss_pred CCcccccccccc
Q psy16230 2 LTGESVPVMKTA 13 (292)
Q Consensus 2 ltges~pv~k~~ 13 (292)
|||||.||+|-|
T Consensus 185 lTGESLpvtKh~ 196 (942)
T KOG0205|consen 185 LTGESLPVTKHP 196 (942)
T ss_pred hcCCccccccCC
Confidence 899999999976
No 65
>KOG0207|consensus
Probab=67.31 E-value=2.1 Score=44.15 Aligned_cols=13 Identities=54% Similarity=0.861 Sum_probs=11.8
Q ss_pred CCCcccccccccc
Q psy16230 1 MLTGESVPVMKTA 13 (292)
Q Consensus 1 mltges~pv~k~~ 13 (292)
|+||||+||+|.+
T Consensus 428 ~iTGEs~PV~Kk~ 440 (951)
T KOG0207|consen 428 LITGESMPVPKKK 440 (951)
T ss_pred hccCCceecccCC
Confidence 6899999999976
No 66
>PRK11507 ribosome-associated protein; Provisional
Probab=64.93 E-value=11 Score=26.43 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=21.0
Q ss_pred EEecCCeEEEEECCCCCCCcEEEEccCCCE
Q psy16230 191 VKRSKGLYEEVPTTHLVPGDIIVIPKHGCT 220 (292)
Q Consensus 191 V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~ 220 (292)
|..| |+...-.-..|.|||+|.+ +|+.
T Consensus 39 V~VN-Geve~rRgkKl~~GD~V~~--~g~~ 65 (70)
T PRK11507 39 VKVD-GAVETRKRCKIVAGQTVSF--AGHS 65 (70)
T ss_pred eEEC-CEEecccCCCCCCCCEEEE--CCEE
Confidence 4454 8877788899999999999 3544
No 67
>PF15584 Imm44: Immunity protein 44
Probab=59.98 E-value=3.9 Score=30.21 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCEEeccEEE
Q psy16230 208 PGDIIVIPKHGCTLACDATL 227 (292)
Q Consensus 208 ~GDii~i~~~G~~iP~D~~l 227 (292)
+.+-.+| ..|++|||||+=
T Consensus 13 ~~~~~~I-~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVI-KSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEE-ecCCCcccCCeE
Confidence 3445677 689999999986
No 68
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.49 E-value=15 Score=27.73 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=19.1
Q ss_pred CCCCCCcEEEEccCCCEEeccEEEEe
Q psy16230 204 THLVPGDIIVIPKHGCTLACDATLLQ 229 (292)
Q Consensus 204 ~~Lv~GDii~i~~~G~~iP~D~~ll~ 229 (292)
..+.|||.|+. +|+.+|+-.+=+.
T Consensus 32 r~ik~GD~IiF--~~~~l~v~V~~vr 55 (111)
T COG4043 32 RQIKPGDKIIF--NGDKLKVEVIDVR 55 (111)
T ss_pred cCCCCCCEEEE--cCCeeEEEEEEEe
Confidence 57899999999 5899998665443
No 69
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=53.95 E-value=9.2 Score=38.48 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=22.6
Q ss_pred ECCCCCCCcEEEEccCCCEEe-ccEEEEe
Q psy16230 202 PTTHLVPGDIIVIPKHGCTLA-CDATLLQ 229 (292)
Q Consensus 202 ~~~~Lv~GDii~i~~~G~~iP-~D~~ll~ 229 (292)
.-.+|.+||.|.|.++||+|| .++++.+
T Consensus 364 ~rkdIrIGDtV~V~kAGdVIP~V~~Vv~e 392 (667)
T COG0272 364 KRKDIRIGDTVVVRKAGDVIPQVVGVVLE 392 (667)
T ss_pred HhcCCCCCCEEEEEecCCCCcceeeeecc
Confidence 358999999999988999999 5555543
No 70
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=47.49 E-value=16 Score=31.68 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=19.5
Q ss_pred eEEEEecCCeEEEEE-------CCCCCCCcEEEEccCCCE
Q psy16230 188 KVTVKRSKGLYEEVP-------TTHLVPGDIIVIPKHGCT 220 (292)
Q Consensus 188 ~v~V~r~~g~~~~i~-------~~~Lv~GDii~i~~~G~~ 220 (292)
.+.|++.||+....+ ..++.|||+|.|+..++.
T Consensus 168 ~v~VI~pdG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~~~~~ 207 (229)
T PF06251_consen 168 RVYVIQPDGSVQKVPVAYWNNQHQELAPGATIYVPFDTSS 207 (229)
T ss_dssp EEEEE-TTS-EEEEE-STTT--EEE--TT-EEEE-B-TTT
T ss_pred cEEEEeCCCcEEEcceehhccCCCCCCCCCEEEEcCCccc
Confidence 899999889876654 357889999999643333
No 71
>smart00532 LIGANc Ligase N family.
Probab=47.07 E-value=12 Score=36.06 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.8
Q ss_pred ECCCCCCCcEEEEccCCCEEec
Q psy16230 202 PTTHLVPGDIIVIPKHGCTLAC 223 (292)
Q Consensus 202 ~~~~Lv~GDii~i~~~G~~iP~ 223 (292)
...+|.+||.|.|.++||+||.
T Consensus 359 ~~~~i~iGd~V~V~raGdVIP~ 380 (441)
T smart00532 359 EEKDIRIGDTVVVRKAGDVIPK 380 (441)
T ss_pred HHcCCCCCCEEEEEECCCcCcc
Confidence 4678999999999999999995
No 72
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=44.70 E-value=52 Score=21.54 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=26.9
Q ss_pred eEEEEecCCeEEEEEC-CCCCCCcEEEEccCCCEEe
Q psy16230 188 KVTVKRSKGLYEEVPT-THLVPGDIIVIPKHGCTLA 222 (292)
Q Consensus 188 ~v~V~r~~g~~~~i~~-~~Lv~GDii~i~~~G~~iP 222 (292)
.+.|+.++|+...++. .+..+||-|.+ ...+..+
T Consensus 7 ~aiVlT~dGeF~~ik~~~~~~vG~eI~~-~~~~~~~ 41 (56)
T PF12791_consen 7 YAIVLTPDGEFIKIKRKPGMEVGQEIEF-DEKDIIN 41 (56)
T ss_pred EEEEEcCCCcEEEEeCCCCCcccCEEEE-echhhcc
Confidence 6788888899999884 37999999999 4665544
No 73
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=43.49 E-value=71 Score=22.20 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEecCCeEEEEEC---CCCCCCcEEEEccCCC
Q psy16230 188 KVTVKRSKGLYEEVPT---THLVPGDIIVIPKHGC 219 (292)
Q Consensus 188 ~v~V~r~~g~~~~i~~---~~Lv~GDii~i~~~G~ 219 (292)
.+.|-.. |..++++. .++.|||.|.+ ..|.
T Consensus 18 ~A~v~~~-G~~~~V~~~lv~~v~~Gd~VLV-HaG~ 50 (68)
T PF01455_consen 18 MAVVDFG-GVRREVSLALVPDVKVGDYVLV-HAGF 50 (68)
T ss_dssp EEEEEET-TEEEEEEGTTCTSB-TT-EEEE-ETTE
T ss_pred EEEEEcC-CcEEEEEEEEeCCCCCCCEEEE-ecCh
Confidence 5566565 88888873 46889999999 7884
No 74
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=43.14 E-value=18 Score=25.07 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=10.0
Q ss_pred CeEEEEECCCCCCCcEEEE
Q psy16230 196 GLYEEVPTTHLVPGDIIVI 214 (292)
Q Consensus 196 g~~~~i~~~~Lv~GDii~i 214 (292)
|+...-....|.|||+|.+
T Consensus 39 Ge~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 39 GEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp TB----SS----SSEEEEE
T ss_pred CEEccccCCcCCCCCEEEE
Confidence 7777777889999999999
No 75
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=41.88 E-value=28 Score=25.12 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=20.3
Q ss_pred eEEEEecCCeEEEEECCCCCCCcEEEE
Q psy16230 188 KVTVKRSKGLYEEVPTTHLVPGDIIVI 214 (292)
Q Consensus 188 ~v~V~r~~g~~~~i~~~~Lv~GDii~i 214 (292)
.+.+.++ +...++.+.+|.+||.|.+
T Consensus 73 ~~~~~~~-~~~~w~~a~~l~~gd~v~~ 98 (100)
T smart00306 73 LLLVRDG-GKLVWVFASELKPGDYVLV 98 (100)
T ss_pred EEEEecC-CcEEEEEHHHCCCCCEEEe
Confidence 4555554 6667899999999999987
No 76
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=41.39 E-value=11 Score=38.26 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.5
Q ss_pred ECCCCCCCcEEEEccCCCEEec
Q psy16230 202 PTTHLVPGDIIVIPKHGCTLAC 223 (292)
Q Consensus 202 ~~~~Lv~GDii~i~~~G~~iP~ 223 (292)
...+|.+||.|.|.++||+||.
T Consensus 361 ~~~di~iGD~V~V~raGdVIP~ 382 (669)
T PRK14350 361 DSIGLNVGDVVKISRRGDVIPA 382 (669)
T ss_pred HHcCCCCCCEEEEEecCCCCCc
Confidence 4578899999999999999994
No 77
>PRK04980 hypothetical protein; Provisional
Probab=41.03 E-value=95 Score=23.54 Aligned_cols=49 Identities=20% Similarity=0.402 Sum_probs=33.1
Q ss_pred CCCCCCCcEEEEcc--CCCEEeccEEEEeeeE----Eeec--ccccCCCcceeeccCC
Q psy16230 203 TTHLVPGDIIVIPK--HGCTLACDATLLQGNC----IVNE--SMLTGESVPVMKTALP 252 (292)
Q Consensus 203 ~~~Lv~GDii~i~~--~G~~iP~D~~ll~G~~----~vde--S~LTGES~pv~K~~~~ 252 (292)
....+|||.+.| . .+.+.-|+..+++=.. .+|| +..-|+|.+-.|..+.
T Consensus 29 e~~~~~G~~~~V-~~~e~g~~~c~ieI~sV~~i~f~eLte~hA~qEg~sL~elk~~i~ 85 (102)
T PRK04980 29 ESHFKPGDVLRV-GTFEDDRYFCTIEVLSVSPVTFDELNEKHAEQENMTLPELKQVIA 85 (102)
T ss_pred ccCCCCCCEEEE-EECCCCcEEEEEEEEEEEEEehhhCCHHHHHHhCCCHHHHHHHHH
Confidence 357899999999 5 7788889999986542 2322 4455666665555443
No 78
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=39.73 E-value=18 Score=35.95 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=18.9
Q ss_pred CCCCCCCcEEEEccCCCEEec
Q psy16230 203 TTHLVPGDIIVIPKHGCTLAC 223 (292)
Q Consensus 203 ~~~Lv~GDii~i~~~G~~iP~ 223 (292)
-.+|.+||.|.|.++||+||.
T Consensus 357 ~~~I~iGD~V~V~raGdVIP~ 377 (562)
T PRK08097 357 QWDIAPGDQVLVSLAGQGIPR 377 (562)
T ss_pred HcCCCCCCEEEEEecCCCCcc
Confidence 568889999999899999996
No 79
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=38.02 E-value=20 Score=36.64 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=19.7
Q ss_pred ECCCCCCCcEEEEccCCCEEec
Q psy16230 202 PTTHLVPGDIIVIPKHGCTLAC 223 (292)
Q Consensus 202 ~~~~Lv~GDii~i~~~G~~iP~ 223 (292)
...+|.+||.|.|.++||+||.
T Consensus 386 ~~~di~iGD~V~V~raGdVIPk 407 (689)
T PRK14351 386 EELGVNVGDRVRVKRAGDVIPY 407 (689)
T ss_pred HHcCCCCCCEEEEEecCCccce
Confidence 4578999999999999999995
No 80
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=37.65 E-value=21 Score=36.38 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=21.1
Q ss_pred ECCCCCCCcEEEEccCCCEEec-cEEE
Q psy16230 202 PTTHLVPGDIIVIPKHGCTLAC-DATL 227 (292)
Q Consensus 202 ~~~~Lv~GDii~i~~~G~~iP~-D~~l 227 (292)
...+|.+||.|.|.++||+||- ++++
T Consensus 364 ~~~~i~iGD~V~V~raGdVIP~i~~vv 390 (665)
T PRK07956 364 ERKDIRIGDTVVVRRAGDVIPEVVGVV 390 (665)
T ss_pred HHcCCCCCCEEEEEECCCccceeeeee
Confidence 3578999999999999999994 4443
No 81
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=36.01 E-value=22 Score=36.07 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.4
Q ss_pred ECCCCCCCcEEEEccCCCEEec
Q psy16230 202 PTTHLVPGDIIVIPKHGCTLAC 223 (292)
Q Consensus 202 ~~~~Lv~GDii~i~~~G~~iP~ 223 (292)
...+|.+||.|.|.++||+||.
T Consensus 352 ~~~~i~iGD~V~V~raGdVIP~ 373 (652)
T TIGR00575 352 EELDIRIGDTVVVRKAGDVIPK 373 (652)
T ss_pred HHcCCCCCCEEEEEecCCcCce
Confidence 3568999999999999999994
No 82
>PRK05015 aminopeptidase B; Provisional
Probab=34.94 E-value=47 Score=31.75 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=32.5
Q ss_pred EEECCCCCCCcEEEEccCCCEEe-----ccEEEE-----------eeeEEeecccccCCCcc
Q psy16230 200 EVPTTHLVPGDIIVIPKHGCTLA-----CDATLL-----------QGNCIVNESMLTGESVP 245 (292)
Q Consensus 200 ~i~~~~Lv~GDii~i~~~G~~iP-----~D~~ll-----------~G~~~vdeS~LTGES~p 245 (292)
.++....+|||||.- .+|-.|- |.|+|+ .-..++|-+.|||-.+.
T Consensus 247 misg~A~kpgDVIt~-~nGkTVEI~NTDAEGRLVLAD~L~yA~~~~p~~IID~ATLTGA~~~ 307 (424)
T PRK05015 247 LISGNAFKLGDIITY-RNGKTVEVMNTDAEGRLVLADGLIDASEQGPPLIIDAATLTGAAKT 307 (424)
T ss_pred CCCCCCCCCCCEEEe-cCCcEEeeeccCccceeeehhHHHHhhhcCCCEEEEeeccchhhHh
Confidence 577888999999998 7776543 344444 12478999999997543
No 83
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=34.67 E-value=30 Score=27.31 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=16.6
Q ss_pred EEEECCCCCCCcEEEEccCCCEEeccEE
Q psy16230 199 EEVPTTHLVPGDIIVIPKHGCTLACDAT 226 (292)
Q Consensus 199 ~~i~~~~Lv~GDii~i~~~G~~iP~D~~ 226 (292)
.++.+.+|.+||.+.- ..|.......+
T Consensus 70 gWv~A~~L~~GD~L~~-~~G~~~~v~~i 96 (130)
T PF07591_consen 70 GWVEAEDLKVGDRLLT-ADGSWVTVTSI 96 (130)
T ss_dssp --EEGGG--TTSEEEE-E-SSEEEEE--
T ss_pred hhhhHhhCCCCCEEEc-CCCCEEEEEEE
Confidence 4688999999999998 68877655444
No 84
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=34.59 E-value=2.1e+02 Score=21.85 Aligned_cols=79 Identities=18% Similarity=0.268 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHhhhccCceEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeeeEE-
Q psy16230 157 GAIICMSVFGIVSSVIQTR--QKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCI- 233 (292)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~~~- 233 (292)
++++++.++..+++++|.+ .+.++++.... .|-+=|. ..-..+|-|+.+--+.+-.=.||.+++|-.+
T Consensus 6 i~~~~~~~lQ~~l~~~Qik~f~~~~~~l~~~G-~V~iG~~--------~g~f~~g~Ivlla~D~~~~I~~~~~M~G~TVF 76 (109)
T PF06923_consen 6 ILLVIAWLLQILLGWFQIKNFNKAYKELRKKG-RVGIGRS--------KGRFRPGVIVLLAVDEDGRIVDAEIMKGITVF 76 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cEEEeee--------cCcccCCeEEEEEECCCCcEEEEEEEeceEEE
Confidence 3445556667778888888 77777776433 4433332 2345688888873233444477888888422
Q ss_pred ---eecccccCCCc
Q psy16230 234 ---VNESMLTGESV 244 (292)
Q Consensus 234 ---vdeS~LTGES~ 244 (292)
=+-..+.|.+.
T Consensus 77 ArFk~~~~l~G~~l 90 (109)
T PF06923_consen 77 ARFKPLPELEGKNL 90 (109)
T ss_pred EeeEehHhhCCCCH
Confidence 13444555544
No 85
>KOG0204|consensus
Probab=32.46 E-value=47 Score=34.66 Aligned_cols=41 Identities=34% Similarity=0.379 Sum_probs=28.6
Q ss_pred CCCccccccccccCCCCCCCCCccccceeEEEeceEEEEeeecCCeeeEEEeeee
Q psy16230 1 MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 55 (292)
Q Consensus 1 mltges~pv~k~~~~~~~~~~~~~~~~~~~l~~gt~i~q~~~~g~~~v~a~~~~t 55 (292)
.|||||=||.|.+- +.-+|++||++..-. |.-.+-++..|+
T Consensus 270 SlTGESd~v~k~~~------------~dPfLlSGTkv~eGs--gkMlVTaVGmnt 310 (1034)
T KOG0204|consen 270 SLTGESDHVQKSLD------------KDPFLLSGTKVMEGS--GKMLVTAVGMNT 310 (1034)
T ss_pred cccCCCcceeccCC------------CCCeEeecceeecCc--ceEEEEEeeecc
Confidence 48999999888763 456899999998543 444555555554
No 86
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=30.67 E-value=78 Score=29.64 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=23.5
Q ss_pred eEEEEecCCeEEEEECCC----------CCCCcEEEEccCCCEEeccE
Q psy16230 188 KVTVKRSKGLYEEVPTTH----------LVPGDIIVIPKHGCTLACDA 225 (292)
Q Consensus 188 ~v~V~r~~g~~~~i~~~~----------Lv~GDii~i~~~G~~iP~D~ 225 (292)
.+++.|+ |+...++..+ |.|||+|.|++....+-+-|
T Consensus 199 ~V~l~R~-~~~~~i~l~dL~~~~~~ni~L~~GDvI~V~~~~~~v~V~G 245 (355)
T PRK15175 199 EVHVTRQ-QHYFTARLSDIYQYPGLDIALQPDDRITLRQVTEYVNVLG 245 (355)
T ss_pred EEEEEEC-CEEEEEEHHHHhhCCcCCcEeCCCCEEEEccCCCEEEEEE
Confidence 6788887 7766664333 66899998853344444333
No 87
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=30.53 E-value=65 Score=24.33 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=17.9
Q ss_pred CeEEEEECCCCCCCcEEEEccCCCE
Q psy16230 196 GLYEEVPTTHLVPGDIIVIPKHGCT 220 (292)
Q Consensus 196 g~~~~i~~~~Lv~GDii~i~~~G~~ 220 (292)
|... -++.++.+||+|.| .-|..
T Consensus 40 G~~a-KpS~~VK~GD~l~i-~~~~~ 62 (100)
T COG1188 40 GQRA-KPSKEVKVGDILTI-RFGNK 62 (100)
T ss_pred CEEc-ccccccCCCCEEEE-EeCCc
Confidence 6544 78999999999999 55543
No 88
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=30.51 E-value=36 Score=21.31 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=10.2
Q ss_pred CCCCcEEEEccCCCEEeccE
Q psy16230 206 LVPGDIIVIPKHGCTLACDA 225 (292)
Q Consensus 206 Lv~GDii~i~~~G~~iP~D~ 225 (292)
|.||+-|.-.-.|+.||.|-
T Consensus 2 l~pG~~V~CAVTg~~IpLd~ 21 (42)
T PF09866_consen 2 LSPGSFVRCAVTGQPIPLDE 21 (42)
T ss_pred ccCCCEEEEEeeCCcccHHH
Confidence 34555555433466666553
No 89
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=30.16 E-value=53 Score=30.49 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=21.6
Q ss_pred ceEEEEecCCeEEEEECCCCCCCcEEEE
Q psy16230 187 DKVTVKRSKGLYEEVPTTHLVPGDIIVI 214 (292)
Q Consensus 187 ~~v~V~r~~g~~~~i~~~~Lv~GDii~i 214 (292)
..+++++++|+ .++..+|+|||-|.+
T Consensus 299 etIrlv~~dG~--~vsVt~Lk~GD~VL~ 324 (344)
T PRK02290 299 ETIRLVTPDGK--PVSVVDLKPGDEVLG 324 (344)
T ss_pred cEEEEECCCCC--EeeeeecCCCCEEEE
Confidence 37777877664 788999999999999
No 90
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=30.04 E-value=41 Score=19.17 Aligned_cols=15 Identities=27% Similarity=0.102 Sum_probs=12.6
Q ss_pred cCCCCHHHHHhhhcc
Q psy16230 97 FNGFTFEEQFMRGIV 111 (292)
Q Consensus 97 ~~GLs~~~~~~r~~~ 111 (292)
.+|||.+|+++|+..
T Consensus 13 eh~ls~ee~~~RL~~ 27 (28)
T PF12368_consen 13 EHGLSEEEVAERLAA 27 (28)
T ss_pred hcCCCHHHHHHHHHc
Confidence 389999999998764
No 91
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=29.50 E-value=52 Score=32.01 Aligned_cols=43 Identities=26% Similarity=0.474 Sum_probs=32.7
Q ss_pred EEECCCCCCCcEEEEccCCCEEe-----ccEEEEe-----------eeEEeecccccCCC
Q psy16230 200 EVPTTHLVPGDIIVIPKHGCTLA-----CDATLLQ-----------GNCIVNESMLTGES 243 (292)
Q Consensus 200 ~i~~~~Lv~GDii~i~~~G~~iP-----~D~~ll~-----------G~~~vdeS~LTGES 243 (292)
.++.+-.+|||||.- .+|-.|= |.|+|+= -+.++|-+.|||--
T Consensus 296 ~is~~A~rPgDVi~s-~~GkTVEI~NTDAEGRLVLaDal~ya~~~~p~~iIDiATLTGA~ 354 (468)
T cd00433 296 MISGNAYRPGDVITS-RSGKTVEILNTDAEGRLVLADALTYAQEFKPDLIIDIATLTGAA 354 (468)
T ss_pred CCCCCCCCCCCEeEe-CCCcEEEEecCCcccceeehhHHHHHhhcCCCEEEEecchHHHH
Confidence 577889999999999 7887654 4566651 24789999999853
No 92
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=28.31 E-value=4e+02 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy16230 138 IFQVFTLCVWFAEAYYYYTGAIICMSV 164 (292)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~i~~~~~ 164 (292)
++.++.+++|+..+||..++.++++.+
T Consensus 19 ~~~iiliiv~f~~~~~l~~i~~l~~~~ 45 (655)
T COG3887 19 AFSIILIIVSFSFNWWLSAIAVLLLVV 45 (655)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445566777777776655544333
No 93
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=27.27 E-value=62 Score=31.62 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=31.3
Q ss_pred EEECCCCCCCcEEEEccCCCEEe-----ccEEEE-----------eeeEEeecccccCCC
Q psy16230 200 EVPTTHLVPGDIIVIPKHGCTLA-----CDATLL-----------QGNCIVNESMLTGES 243 (292)
Q Consensus 200 ~i~~~~Lv~GDii~i~~~G~~iP-----~D~~ll-----------~G~~~vdeS~LTGES 243 (292)
.++.....|||+|.- .+|-.|- |.|+|+ .-..+||-+.|||--
T Consensus 310 m~~~~A~rPgDVi~~-~~GkTVEV~NTDAEGRLvLADal~ya~~~~p~~iiDiATLTGa~ 368 (483)
T PRK00913 310 MPSGNAYRPGDVLTS-MSGKTIEVLNTDAEGRLVLADALTYAERFKPDAIIDVATLTGAC 368 (483)
T ss_pred CCCCCCCCCCCEEEE-CCCcEEEeecCCcccceeehhHHHHhhhcCCCEEEEecchHHHH
Confidence 577889999999998 7776553 344444 224789999999853
No 94
>PF07016 CRAM_rpt: Cysteine-rich acidic integral membrane protein precursor; InterPro: IPR009745 This entry represents a 24 residue repeated motif from the Trypanosoma brucei cysteine-rich, acidic integral membrane protein precursor (CRAM). CRAM is concentrated in the flagellar pocket, an invagination of the cell surface of the trypanosome where endocytosis has been documented [].
Probab=26.08 E-value=31 Score=18.46 Aligned_cols=16 Identities=38% Similarity=0.879 Sum_probs=10.1
Q ss_pred EEeeeE-EeecccccCC
Q psy16230 227 LLQGNC-IVNESMLTGE 242 (292)
Q Consensus 227 ll~G~~-~vdeS~LTGE 242 (292)
.+.|+| ..+..+||||
T Consensus 6 ~lTGeCs~T~dCslTGd 22 (24)
T PF07016_consen 6 NLTGECSLTDDCSLTGD 22 (24)
T ss_pred eeecccccccccceecc
Confidence 446665 4566677776
No 95
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=25.86 E-value=1.2e+02 Score=21.47 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=21.4
Q ss_pred EEEecCCeEEEEECCCCCCCcEEEEccCCCEE
Q psy16230 190 TVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTL 221 (292)
Q Consensus 190 ~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~i 221 (292)
.|..+ |+...=.-..|..||+|.+ +|+.+
T Consensus 38 ~V~vN-Ge~EtRRgkKlr~gd~V~i--~~~~~ 66 (73)
T COG2501 38 EVKVN-GEVETRRGKKLRDGDVVEI--PGQRY 66 (73)
T ss_pred eEEEC-CeeeeccCCEeecCCEEEE--CCEEE
Confidence 45665 7777667788999999999 35443
No 96
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=25.18 E-value=39 Score=26.68 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=12.8
Q ss_pred EEECCCCCCCcEEEE
Q psy16230 200 EVPTTHLVPGDIIVI 214 (292)
Q Consensus 200 ~i~~~~Lv~GDii~i 214 (292)
.++.+++.|||+|..
T Consensus 71 ~v~~~~~qpGDlvff 85 (134)
T TIGR02219 71 PVPCDAAQPGDVLVF 85 (134)
T ss_pred ccchhcCCCCCEEEE
Confidence 456678999999999
No 97
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=24.92 E-value=74 Score=28.94 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=24.5
Q ss_pred hccCceEEEEecCCeEEEEECCCCCCCcEEEEccCCC
Q psy16230 183 VNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGC 219 (292)
Q Consensus 183 ~~~~~~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~ 219 (292)
.++..++++.++|| ..++..+|.|||-|.+ ..++
T Consensus 327 LQNAETIkLv~~dG--~pvSV~eLk~GD~vlv-~~ee 360 (376)
T COG1465 327 LQNAETIKLVNPDG--EPVSVAELKPGDEVLV-YLEE 360 (376)
T ss_pred eccceeEEEEcCCC--cEeeeEecCCCCEEEE-Eehh
Confidence 33333777777777 4688899999999998 4443
No 98
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=24.63 E-value=54 Score=35.87 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=22.8
Q ss_pred eEEEEecCCeEEEEECCCCCCCcEEEEc
Q psy16230 188 KVTVKRSKGLYEEVPTTHLVPGDIIVIP 215 (292)
Q Consensus 188 ~v~V~r~~g~~~~i~~~~Lv~GDii~i~ 215 (292)
.+.++++ |+|.+..+.+|.|||.|.|+
T Consensus 989 PVLv~~~-Gk~i~K~A~dlK~GD~vvIP 1015 (1627)
T PRK14715 989 PVMVYEN-GKFIKKRAMDVKEGDLMLIP 1015 (1627)
T ss_pred ceEEecc-CccceeehhhcCcCceeecc
Confidence 3455665 89999999999999999995
No 99
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=24.26 E-value=92 Score=23.87 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=21.1
Q ss_pred eEEEEecCCeEEEEECCCCCCCcEEEE
Q psy16230 188 KVTVKRSKGLYEEVPTTHLVPGDIIVI 214 (292)
Q Consensus 188 ~v~V~r~~g~~~~i~~~~Lv~GDii~i 214 (292)
...+.++ +.+..+.+.+|.+||.+.+
T Consensus 73 ~~~~~~~-~~~~~~~a~~l~~gd~l~~ 98 (136)
T cd00081 73 LLFVLED-GELKWVFASDLKPGDYVLV 98 (136)
T ss_pred EEEEEeC-CeEEEEEHHHCCCCCEEEE
Confidence 4555554 5678899999999999999
No 100
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=23.70 E-value=57 Score=21.54 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=9.1
Q ss_pred CCCcEEEEccCC
Q psy16230 207 VPGDIIVIPKHG 218 (292)
Q Consensus 207 v~GDii~i~~~G 218 (292)
.+||+|.+ +.|
T Consensus 2 ~~GDvV~L-KSG 12 (53)
T PF09926_consen 2 KIGDVVQL-KSG 12 (53)
T ss_pred CCCCEEEE-ccC
Confidence 58999999 665
No 101
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=23.68 E-value=80 Score=29.46 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=20.4
Q ss_pred eEEEEecCCeEEEEECCCCCCCcEEEE
Q psy16230 188 KVTVKRSKGLYEEVPTTHLVPGDIIVI 214 (292)
Q Consensus 188 ~v~V~r~~g~~~~i~~~~Lv~GDii~i 214 (292)
.+++++.+| ..++..+|+|||.|.+
T Consensus 310 tIRlv~p~G--~~vsVt~Lk~GD~vL~ 334 (354)
T PF01959_consen 310 TIRLVGPDG--EPVSVTELKPGDEVLV 334 (354)
T ss_pred EEEEECCCC--CEeeeeecCCCCEEEE
Confidence 667777655 4688999999999998
No 102
>KOG0210|consensus
Probab=23.06 E-value=4.4e+02 Score=27.34 Aligned_cols=94 Identities=13% Similarity=0.214 Sum_probs=58.6
Q ss_pred CcHHHHHHHHHhchhHHHHHHHH-----HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHH-----hhhccCce-
Q psy16230 122 QNISSLFVLEALNPFYIFQVFTL-----CVWFAEAYYYYTGAIICMSVFGIVSSVIQTR-Q-KSLH-----DTVNTVDK- 188 (292)
Q Consensus 122 ~~~~~ll~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~-~~l~-----~l~~~~~~- 188 (292)
+..+..-++.|++.++++..++- -+.....||.....++.+.++....+-++++ + +..+ .+......
T Consensus 96 p~vl~~qF~~F~nlyfll~alsQ~ip~~~ig~l~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Nse~y~~ltr~~~~~ 175 (1051)
T KOG0210|consen 96 PAVLFEQFKFFLNLYFLLVALSQLIPALKIGYLSTYWGPLGFVLTITLIKEAVDDLKRRRRDRELNSEKYTKLTRDGTRR 175 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchheecchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeccCCccc
Confidence 33344456777777776666652 3566677777777888888888888888777 2 2222 11111110
Q ss_pred --EEEEecCCeEEEEECCCCCCCcEEEEccC
Q psy16230 189 --VTVKRSKGLYEEVPTTHLVPGDIIVIPKH 217 (292)
Q Consensus 189 --v~V~r~~g~~~~i~~~~Lv~GDii~i~~~ 217 (292)
..-+.- |..+.+.-.+=+|-|.|.+ +.
T Consensus 176 ~~Ss~i~v-GDvi~v~K~~RVPADmilL-rT 204 (1051)
T KOG0210|consen 176 EPSSDIKV-GDVIIVHKDERVPADMILL-RT 204 (1051)
T ss_pred cccccccc-ccEEEEecCCcCCcceEEE-Ec
Confidence 111222 5677888889999999999 53
No 103
>PRK11479 hypothetical protein; Provisional
Probab=21.55 E-value=47 Score=29.90 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=15.8
Q ss_pred EEEECCCCCCCcEEEEccCC
Q psy16230 199 EEVPTTHLVPGDIIVIPKHG 218 (292)
Q Consensus 199 ~~i~~~~Lv~GDii~i~~~G 218 (292)
..|+.++|.|||+|.. ..+
T Consensus 58 ~~Vs~~~LqpGDLVFf-st~ 76 (274)
T PRK11479 58 KEITAPDLKPGDLLFS-SSL 76 (274)
T ss_pred cccChhhCCCCCEEEE-ecC
Confidence 4688899999999998 444
No 104
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=21.08 E-value=2.1e+02 Score=20.36 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=17.0
Q ss_pred CeEEEEE---CCCCCCCcEEEEccCCC
Q psy16230 196 GLYEEVP---TTHLVPGDIIVIPKHGC 219 (292)
Q Consensus 196 g~~~~i~---~~~Lv~GDii~i~~~G~ 219 (292)
|..++++ ..++.|||-|.+ +.|-
T Consensus 23 G~~~~v~l~lv~~~~vGD~VLV-H~G~ 48 (76)
T TIGR00074 23 GIKRDVSLDLVGEVKVGDYVLV-HVGF 48 (76)
T ss_pred CeEEEEEEEeeCCCCCCCEEEE-ecCh
Confidence 6555555 357899999999 7773
No 105
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=20.76 E-value=63 Score=27.37 Aligned_cols=19 Identities=26% Similarity=0.642 Sum_probs=15.3
Q ss_pred EEECCCCCCCcEEEEccCCC
Q psy16230 200 EVPTTHLVPGDIIVIPKHGC 219 (292)
Q Consensus 200 ~i~~~~Lv~GDii~i~~~G~ 219 (292)
.|+..++.|||+|.. +.|.
T Consensus 123 ~V~~~~lqpGDLVfF-~~~~ 141 (190)
T PRK10838 123 SVSRSKLRTGDLVLF-RAGS 141 (190)
T ss_pred CcccCCCCCCcEEEE-CCCC
Confidence 466789999999999 5554
No 106
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein. Proteins in this family contain two structural domains, one of which contains the conserved DGXA motif. These two domains are found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this region is uncertain. The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) [].; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1UZ5_A 1T3E_B 2FTS_A 2FU3_A 1XI8_A 1WU2_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A ....
Probab=20.69 E-value=86 Score=25.59 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=20.4
Q ss_pred CCCCCCCcEEEEccCCCEEe--ccEEEEeeeEEeec
Q psy16230 203 TTHLVPGDIIVIPKHGCTLA--CDATLLQGNCIVNE 236 (292)
Q Consensus 203 ~~~Lv~GDii~i~~~G~~iP--~D~~ll~G~~~vde 236 (292)
...|.+|.-+.| ..|..+| ||+++-.-.+.+.+
T Consensus 81 ~~~l~~g~av~I-~TGa~vP~g~DaVV~~E~~~~~~ 115 (162)
T PF03453_consen 81 PIPLQPGEAVRI-MTGAPVPEGADAVVPIEDTEVEG 115 (162)
T ss_dssp SSB--TTEEEEE--TTSB--TT-SEEEEGGGCEEET
T ss_pred cccCCCCeEEEE-eCCCccCCCCCEEEEehheeecc
Confidence 477999999999 6999999 88887654444433
No 107
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=20.51 E-value=1.3e+02 Score=16.00 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=10.1
Q ss_pred CCCCcEEEEccCCCE
Q psy16230 206 LVPGDIIVIPKHGCT 220 (292)
Q Consensus 206 Lv~GDii~i~~~G~~ 220 (292)
+.+||.|.| -.|..
T Consensus 2 ~~~G~~V~I-~~G~~ 15 (28)
T smart00739 2 FEVGDTVRV-IAGPF 15 (28)
T ss_pred CCCCCEEEE-eECCC
Confidence 568899988 46653
Done!