RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16230
         (292 letters)



>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A
           {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 115

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 12/110 (10%)

Query: 187 DKVTVKRS-KGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG---NCIVNESMLTGE 242
           +   V R+ +   + +    +VPGDI+ +   G  +  D  +L        V++S+LTGE
Sbjct: 1   EMGKVYRADRKSVQRIKARDIVPGDIVEV-AVGDKVPADIRILSIKSTTLRVDQSILTGE 59

Query: 243 SVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292
           SV V+K   P        ++  N       +              +V  T
Sbjct: 60  SVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIA-------AGKALGIVATT 102


>d1q44a_ c.37.1.5 (A:) Putative steroid sulfotransferase rarO47
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 320

 Score = 28.3 bits (62), Expect = 1.2
 Identities = 8/40 (20%), Positives = 21/40 (52%)

Query: 73  SDQEQNFIKLVGLDKGLTNSQLHQFNGFTFEEQFMRGIVY 112
           + + +  I  +  +KG   S++++F G    +  ++GI+ 
Sbjct: 12  TQETRALISSLPKEKGWLVSEIYEFQGLWHTQAILQGILI 51


>d2io8a2 d.3.1.15 (A:10-200) Glutathionylspermidine synthase,
           amidase domain {Escherichia coli [TaxId: 562]}
          Length = 191

 Score = 27.2 bits (60), Expect = 2.0
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 145 CVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLYEEVPTT 204
           CV FA  + +    +    VF  V    +         V   + + ++     +      
Sbjct: 50  CVEFARRFLFLNYGV----VFTDVGMAWEIFSLRFLREVVNDNILPLQA----FPNGSPR 101

Query: 205 HLVPGDIIVIPKHG 218
             V G +++  K G
Sbjct: 102 APVAGALLIWDKGG 115


>d1g3nc2 a.74.1.1 (C:148-253) Viral cyclin {Kaposi's
           sarcoma-associated herpesvirus [TaxId: 37296]}
          Length = 106

 Score = 24.7 bits (53), Expect = 7.5
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 17/78 (21%)

Query: 180 HDTVNT------VDKVTVKRSKGLYEEVPTTHLVPGDII--------VIPKHGCTLACDA 225
           H  VNT      VD +T      +        LVP ++I        V+P+    L CD 
Sbjct: 26  HHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDV 85

Query: 226 TLLQGNCIVNESMLTGES 243
           ++LQ      E +LT  S
Sbjct: 86  SVLQAAV---EQILTSVS 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,085,725
Number of extensions: 47734
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 7
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)