Query psy16232
Match_columns 176
No_of_seqs 222 out of 1147
Neff 7.6
Searched_HMMs 46136
Date Sat Aug 17 00:15:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02790 Kelch-like protein; P 99.8 7E-19 1.5E-23 155.2 5.2 134 4-140 11-155 (480)
2 KOG4441|consensus 99.7 2.5E-18 5.4E-23 154.5 8.1 93 5-97 26-121 (571)
3 PHA02713 hypothetical protein; 99.7 3.1E-18 6.7E-23 153.6 8.6 92 4-97 14-110 (557)
4 PF00651 BTB: BTB/POZ domain; 99.7 5.7E-17 1.2E-21 115.1 8.6 92 6-97 1-98 (111)
5 PHA03098 kelch-like protein; P 99.7 2E-16 4.4E-21 140.5 8.5 84 12-97 6-92 (534)
6 smart00225 BTB Broad-Complex, 99.6 2.4E-15 5.3E-20 101.2 7.9 81 17-97 1-84 (90)
7 KOG4350|consensus 99.5 7.4E-15 1.6E-19 124.9 5.9 95 3-97 32-132 (620)
8 KOG4682|consensus 99.1 1E-10 2.3E-15 99.5 7.3 153 6-172 60-224 (488)
9 KOG2075|consensus 99.1 3E-10 6.5E-15 98.4 7.7 93 5-97 104-204 (521)
10 KOG4591|consensus 99.0 5.1E-10 1.1E-14 87.8 3.7 89 7-97 58-153 (280)
11 KOG0783|consensus 98.4 3.4E-07 7.4E-12 84.2 6.0 72 5-76 544-634 (1267)
12 KOG0783|consensus 98.3 3.3E-07 7.1E-12 84.3 3.4 85 13-97 708-802 (1267)
13 KOG2838|consensus 97.7 3.2E-05 7E-10 63.7 2.9 80 18-97 133-220 (401)
14 PF02214 BTB_2: BTB/POZ domain 97.6 8.4E-05 1.8E-09 51.4 3.5 79 18-97 1-88 (94)
15 smart00512 Skp1 Found in Skp1 97.5 0.00065 1.4E-08 48.0 7.1 78 18-95 4-104 (104)
16 KOG2716|consensus 97.2 0.0011 2.4E-08 53.5 6.1 79 18-97 7-92 (230)
17 KOG3473|consensus 97.0 0.0056 1.2E-07 42.9 7.7 78 18-95 19-112 (112)
18 PF03931 Skp1_POZ: Skp1 family 96.9 0.0056 1.2E-07 39.3 6.8 56 18-73 3-59 (62)
19 KOG0511|consensus 96.8 0.00099 2.2E-08 57.2 3.2 73 25-97 301-379 (516)
20 KOG0511|consensus 96.3 0.0012 2.5E-08 56.8 0.2 94 4-97 135-233 (516)
21 PF11822 DUF3342: Domain of un 95.9 0.0043 9.2E-08 52.3 1.7 73 25-97 14-91 (317)
22 KOG2714|consensus 95.7 0.022 4.9E-07 49.6 5.6 82 16-97 10-99 (465)
23 KOG2838|consensus 95.1 0.014 3E-07 48.4 2.3 74 6-79 226-329 (401)
24 KOG1665|consensus 94.5 0.1 2.2E-06 42.2 5.5 79 18-97 11-98 (302)
25 KOG1724|consensus 94.1 0.15 3.4E-06 39.0 5.7 80 18-97 7-114 (162)
26 KOG3840|consensus 92.8 0.3 6.5E-06 41.2 5.7 87 11-97 90-186 (438)
27 KOG1987|consensus 88.0 0.14 3E-06 42.3 -0.2 78 20-97 105-188 (297)
28 KOG2723|consensus 85.3 3.6 7.7E-05 33.2 6.5 84 13-97 5-97 (221)
29 KOG2715|consensus 82.3 3.3 7.2E-05 32.1 4.9 84 14-97 18-109 (210)
30 COG5201 SKP1 SCF ubiquitin lig 65.6 24 0.00051 26.3 5.6 80 18-97 4-109 (158)
31 KOG3713|consensus 40.6 85 0.0019 28.2 6.0 79 18-97 33-126 (477)
32 PF06200 tify: tify domain; I 39.0 31 0.00067 19.6 2.0 23 69-91 9-35 (36)
33 PRK02853 hypothetical protein; 32.1 74 0.0016 24.3 3.7 60 34-94 96-158 (161)
34 PF13319 DUF4090: Protein of u 26.5 51 0.0011 22.2 1.7 18 158-175 16-36 (84)
35 PF01466 Skp1: Skp1 family, di 25.9 37 0.00081 22.3 1.1 20 78-97 11-30 (78)
36 PF06793 UPF0262: Uncharacteri 24.1 1.1E+02 0.0025 23.2 3.5 61 34-95 93-156 (158)
37 KOG3342|consensus 20.8 51 0.0011 25.3 1.0 18 17-34 82-101 (180)
No 1
>PHA02790 Kelch-like protein; Provisional
Probab=99.75 E-value=7e-19 Score=155.16 Aligned_cols=134 Identities=14% Similarity=0.081 Sum_probs=95.6
Q ss_pred hhHHHHHhcCCCCcEEEEeCCeEEEeehhhhcch-HHHHHhhcC--CCCCCCeEEe--CCCCHHHHHHHhhhhccCceec
Q psy16232 4 SKTEDVKRTERIPCPAAVGFSTNIKGDLCSLSLC-PYFQKIFSE--TPCKHPVIVL--KDVQGWEIQAIVDFMYKGEISV 78 (176)
Q Consensus 4 s~~~~l~r~~~~~dv~l~v~~~~f~aHr~VLaa~-~yF~~lf~~--~e~~~~~I~l--~~v~~~~~~~lL~fiYtg~i~i 78 (176)
++.-.+.+++++.||++++| +.|+|||+||||+ +|||+||++ .|+.. .|.+ .++++++++.+|+|+|||++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~i 88 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYI 88 (480)
T ss_pred hhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEE
Confidence 34456666666666766654 5999999999999 999999998 45543 4554 3899999999999999999999
Q ss_pred CHHHHHHHHHHhhcccCCc------ccccccccCCCCCCCCCCccccCcchhhhHHHHHHhhhhhhcc
Q psy16232 79 GQDQITSLIKAAENLQLPT------QQLFVLSFGYIPLPAPTSQKISGFTKKLSEMVIYLILKIIIPM 140 (176)
Q Consensus 79 ~~~~v~~ll~aA~~l~v~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~k~~~~~ 140 (176)
+.+|+++++.||++||++. ..+....+.++|.....-+... ..+++.+.+..++.+.+...
T Consensus 89 t~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y-~~~~L~~~a~~fi~~nF~~v 155 (480)
T PHA02790 89 DSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEY-GLSNLLCHTKDFIAKHFLEL 155 (480)
T ss_pred ecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHh-CHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999988 2222333444444333222233 33455566655555555443
No 2
>KOG4441|consensus
Probab=99.75 E-value=2.5e-18 Score=154.50 Aligned_cols=93 Identities=22% Similarity=0.443 Sum_probs=85.0
Q ss_pred hHHHHHhcCCCCcEEEEeCCeEEEeehhhhcch-HHHHHhhcC--CCCCCCeEEeCCCCHHHHHHHhhhhccCceecCHH
Q psy16232 5 KTEDVKRTERIPCPAAVGFSTNIKGDLCSLSLC-PYFQKIFSE--TPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQD 81 (176)
Q Consensus 5 ~~~~l~r~~~~~dv~l~v~~~~f~aHr~VLaa~-~yF~~lf~~--~e~~~~~I~l~~v~~~~~~~lL~fiYtg~i~i~~~ 81 (176)
.++.++..+.+.||++.++++.|+|||+||||+ +||++||++ .|+.+.+|.+.++++++++.+++|+|||++.++.+
T Consensus 26 ~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~ 105 (571)
T KOG4441|consen 26 GLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISED 105 (571)
T ss_pred HHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechH
Confidence 345554455555599999999999999999999 999999997 78999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCc
Q psy16232 82 QITSLIKAAENLQLPT 97 (176)
Q Consensus 82 ~v~~ll~aA~~l~v~~ 97 (176)
|+++++.+|.+||++.
T Consensus 106 nVq~ll~aA~~lQi~~ 121 (571)
T KOG4441|consen 106 NVQELLEAASLLQIPE 121 (571)
T ss_pred hHHHHHHHHHHhhhHH
Confidence 9999999999999998
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.75 E-value=3.1e-18 Score=153.60 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=81.3
Q ss_pred hhHHHHHhcCCCCcEEEEeC-CeEEEeehhhhcch-HHHHHhhcC--CCC-CCCeEEeCCCCHHHHHHHhhhhccCceec
Q psy16232 4 SKTEDVKRTERIPCPAAVGF-STNIKGDLCSLSLC-PYFQKIFSE--TPC-KHPVIVLKDVQGWEIQAIVDFMYKGEISV 78 (176)
Q Consensus 4 s~~~~l~r~~~~~dv~l~v~-~~~f~aHr~VLaa~-~yF~~lf~~--~e~-~~~~I~l~~v~~~~~~~lL~fiYtg~i~i 78 (176)
..+.+++.++.+.||+|.++ |+.|+|||+||||+ +||++||++ .|. ....|+|+++++++|+.+|+|+|||+ +
T Consensus 14 ~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i 91 (557)
T PHA02713 14 SNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--I 91 (557)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--C
Confidence 45667766666666999997 89999999999999 999999998 343 46789999999999999999999997 6
Q ss_pred CHHHHHHHHHHhhcccCCc
Q psy16232 79 GQDQITSLIKAAENLQLPT 97 (176)
Q Consensus 79 ~~~~v~~ll~aA~~l~v~~ 97 (176)
+.+++++++.+|++||++.
T Consensus 92 ~~~nv~~ll~aA~~lqi~~ 110 (557)
T PHA02713 92 SSMNVIDVLKCADYLLIDD 110 (557)
T ss_pred CHHHHHHHHHHHHHHCHHH
Confidence 8999999999999999998
No 4
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.71 E-value=5.7e-17 Score=115.09 Aligned_cols=92 Identities=24% Similarity=0.407 Sum_probs=81.3
Q ss_pred HHHHHhcCCCCcEEEEeC-CeEEEeehhhhcch-HHHHHhhcCC-CCCC--CeEEeCCCCHHHHHHHhhhhccCceecC-
Q psy16232 6 TEDVKRTERIPCPAAVGF-STNIKGDLCSLSLC-PYFQKIFSET-PCKH--PVIVLKDVQGWEIQAIVDFMYKGEISVG- 79 (176)
Q Consensus 6 ~~~l~r~~~~~dv~l~v~-~~~f~aHr~VLaa~-~yF~~lf~~~-e~~~--~~I~l~~v~~~~~~~lL~fiYtg~i~i~- 79 (176)
|++++.++.+.|+++.++ +..|+|||.||+++ +||+.+|.+. .... ..|.++++++++|+.+++|+|+|++.++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 578889999999999999 89999999999999 9999999986 3333 3688899999999999999999999998
Q ss_pred HHHHHHHHHHhhcccCCc
Q psy16232 80 QDQITSLIKAAENLQLPT 97 (176)
Q Consensus 80 ~~~v~~ll~aA~~l~v~~ 97 (176)
.+++.+++.+|++|+++.
T Consensus 81 ~~~~~~ll~lA~~~~~~~ 98 (111)
T PF00651_consen 81 DENVEELLELADKLQIPE 98 (111)
T ss_dssp TTTHHHHHHHHHHTTBHH
T ss_pred HHHHHHHHHHHHHhCcHH
Confidence 999999999999999988
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.66 E-value=2e-16 Score=140.55 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=78.2
Q ss_pred cCCCCcEEEEe--CCeEEEeehhhhcch-HHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhhhhccCceecCHHHHHHHHH
Q psy16232 12 TERIPCPAAVG--FSTNIKGDLCSLSLC-PYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIK 88 (176)
Q Consensus 12 ~~~~~dv~l~v--~~~~f~aHr~VLaa~-~yF~~lf~~~e~~~~~I~l~~v~~~~~~~lL~fiYtg~i~i~~~~v~~ll~ 88 (176)
++.+.||++.+ +|+.|+|||.|||++ +||++||.+... ...|.+++ ++++|+.+|+|+|||++.++.+++.+++.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~ 83 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILS 83 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHH
Confidence 56677788887 999999999999999 999999998655 68899999 99999999999999999999999999999
Q ss_pred HhhcccCCc
Q psy16232 89 AAENLQLPT 97 (176)
Q Consensus 89 aA~~l~v~~ 97 (176)
+|++||++.
T Consensus 84 ~A~~l~~~~ 92 (534)
T PHA03098 84 IANYLIIDF 92 (534)
T ss_pred HHHHhCcHH
Confidence 999999999
No 6
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.61 E-value=2.4e-15 Score=101.23 Aligned_cols=81 Identities=28% Similarity=0.525 Sum_probs=75.1
Q ss_pred cEEEEeCCeEEEeehhhhcch-HHHHHhhcCCCC--CCCeEEeCCCCHHHHHHHhhhhccCceecCHHHHHHHHHHhhcc
Q psy16232 17 CPAAVGFSTNIKGDLCSLSLC-PYFQKIFSETPC--KHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAENL 93 (176)
Q Consensus 17 dv~l~v~~~~f~aHr~VLaa~-~yF~~lf~~~e~--~~~~I~l~~v~~~~~~~lL~fiYtg~i~i~~~~v~~ll~aA~~l 93 (176)
|+++.++|+.|++||.+|+++ +||+.+|.+.+. ....+.++++++++|+.+++|+|+|++.++..++..++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 467899999999999999999 999999998543 67889999999999999999999999999999999999999999
Q ss_pred cCCc
Q psy16232 94 QLPT 97 (176)
Q Consensus 94 ~v~~ 97 (176)
+++.
T Consensus 81 ~~~~ 84 (90)
T smart00225 81 QIPG 84 (90)
T ss_pred CcHH
Confidence 9987
No 7
>KOG4350|consensus
Probab=99.54 E-value=7.4e-15 Score=124.87 Aligned_cols=95 Identities=15% Similarity=0.272 Sum_probs=87.0
Q ss_pred hhhHHHHHhcCCCCcEEEEeCCeEEEeehhhhcch-HHHHHhhcC--CCCCCCeEEeCCCCHHHHHHHhhhhccCceecC
Q psy16232 3 TSKTEDVKRTERIPCPAAVGFSTNIKGDLCSLSLC-PYFQKIFSE--TPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVG 79 (176)
Q Consensus 3 ~s~~~~l~r~~~~~dv~l~v~~~~f~aHr~VLaa~-~yF~~lf~~--~e~~~~~I~l~~v~~~~~~~lL~fiYtg~i~i~ 79 (176)
...|.+++-+++..||+|+++++.|+|||+||||+ .|||+|+-+ .|+.+..|.+++-..++|+.+|+|||||++.+.
T Consensus 32 S~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~ 111 (620)
T KOG4350|consen 32 SQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLA 111 (620)
T ss_pred hHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecc
Confidence 45688999999999999999999999999999999 999999987 688899999999999999999999999999764
Q ss_pred ---HHHHHHHHHHhhcccCCc
Q psy16232 80 ---QDQITSLIKAAENLQLPT 97 (176)
Q Consensus 80 ---~~~v~~ll~aA~~l~v~~ 97 (176)
.+.+.+.|.+|..|++++
T Consensus 112 ~~~ed~lld~LslAh~Ygf~~ 132 (620)
T KOG4350|consen 112 GVEEDILLDYLSLAHRYGFIQ 132 (620)
T ss_pred cchHHHHHHHHHHHHhcCcHH
Confidence 466788999999999887
No 8
>KOG4682|consensus
Probab=99.14 E-value=1e-10 Score=99.47 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=118.5
Q ss_pred HHHHHhcCCCCcEEEEeCCeEEEeehhhhcchHHHHHhhcC--CCCCCCeEEeC----CCCHHHHHHHhhhhccCceecC
Q psy16232 6 TEDVKRTERIPCPAAVGFSTNIKGDLCSLSLCPYFQKIFSE--TPCKHPVIVLK----DVQGWEIQAIVDFMYKGEISVG 79 (176)
Q Consensus 6 ~~~l~r~~~~~dv~l~v~~~~f~aHr~VLaa~~yF~~lf~~--~e~~~~~I~l~----~v~~~~~~~lL~fiYtg~i~i~ 79 (176)
|++++.+++.+||.+.+-|..++.||.-|...+||.+||++ .|++...|.|. .|+.+++..++.-+|..++.|.
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~ 139 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIK 139 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheecc
Confidence 58899999999999999999999999999988999999999 57777777774 6999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCc--ccccccc----cCCCCCCCCCCccccCcchhhhHHHHHHhhhhhhcceeeeccceeeeCc
Q psy16232 80 QDQITSLIKAAENLQLPT--QQLFVLS----FGYIPLPAPTSQKISGFTKKLSEMVIYLILKIIIPMLYEFNGLYTVVNP 153 (176)
Q Consensus 80 ~~~v~~ll~aA~~l~v~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~k~~~~~~~~~~g~~~~~~~ 153 (176)
.+.+..++.+|.++++.+ ++|.+.. +......-..++..+| .++..+.++-+....++++...
T Consensus 140 l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYg-le~vk~kc~ewl~~nl~~i~~~---------- 208 (488)
T KOG4682|consen 140 LSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYG-LESVKKKCLEWLLNNLMTIQNV---------- 208 (488)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhh-hHHHHHHHHHHHHHhhHhhhhH----------
Confidence 999999999999999999 3333221 1122222333344444 4455666666666777776652
Q ss_pred cccccCCcccHHHHHHHHh
Q psy16232 154 EAQKIMTPIPQSFFLKVLR 172 (176)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~ 172 (176)
| -+.-||+++|.+++.
T Consensus 209 --q-~l~ei~~~Lm~~ll~ 224 (488)
T KOG4682|consen 209 --Q-LLKEISINLMKQLLG 224 (488)
T ss_pred --H-HHHhcCHHHHHHHhC
Confidence 3 666778888888764
No 9
>KOG2075|consensus
Probab=99.08 E-value=3e-10 Score=98.41 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=83.4
Q ss_pred hHHHHHhcCCCCcEEEEeCC-----eEEEeehhhhcch-HHHHHhhcCC--CCCCCeEEeCCCCHHHHHHHhhhhccCce
Q psy16232 5 KTEDVKRTERIPCPAAVGFS-----TNIKGDLCSLSLC-PYFQKIFSET--PCKHPVIVLKDVQGWEIQAIVDFMYKGEI 76 (176)
Q Consensus 5 ~~~~l~r~~~~~dv~l~v~~-----~~f~aHr~VLaa~-~yF~~lf~~~--e~~~~~I~l~~v~~~~~~~lL~fiYtg~i 76 (176)
.+..+++++...|+.+++++ +.++|||.|||.. +.|.+||.+. +....+|.++|+.+.+|..+|+|+|+..+
T Consensus 104 r~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev 183 (521)
T KOG2075|consen 104 RQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEV 183 (521)
T ss_pred hhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchh
Confidence 34556778888889999863 4799999999999 9999999983 45578999999999999999999999999
Q ss_pred ecCHHHHHHHHHHhhcccCCc
Q psy16232 77 SVGQDQITSLIKAAENLQLPT 97 (176)
Q Consensus 77 ~i~~~~v~~ll~aA~~l~v~~ 97 (176)
.+..+++..++.+|++|-++.
T Consensus 184 ~~~~dtvi~tl~~AkKY~Vpa 204 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKYLVPA 204 (521)
T ss_pred hhhHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999988
No 10
>KOG4591|consensus
Probab=98.96 E-value=5.1e-10 Score=87.77 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=74.2
Q ss_pred HHHHhcCCCCcEEEEeC---CeEEEeehhhhcch-HHHHHhhcC-CCCCCCeEEeCCCCHHHHHHHhhhhccCceecC--
Q psy16232 7 EDVKRTERIPCPAAVGF---STNIKGDLCSLSLC-PYFQKIFSE-TPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVG-- 79 (176)
Q Consensus 7 ~~l~r~~~~~dv~l~v~---~~~f~aHr~VLaa~-~yF~~lf~~-~e~~~~~I~l~~v~~~~~~~lL~fiYtg~i~i~-- 79 (176)
.+++.+++++|+++.++ ++.++|||.||||+ ++++ |.+ ...+..+..++|+++++|...++||||.++.+.
T Consensus 58 adL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~d 135 (280)
T KOG4591|consen 58 ADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKED 135 (280)
T ss_pred HHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhheeeeccccccccc
Confidence 67888999999999997 56899999999999 9886 343 222345667789999999999999999999875
Q ss_pred HHHHHHHHHHhhcccCCc
Q psy16232 80 QDQITSLIKAAENLQLPT 97 (176)
Q Consensus 80 ~~~v~~ll~aA~~l~v~~ 97 (176)
++.+.+++++|..||+.-
T Consensus 136 D~~L~el~e~An~FqLe~ 153 (280)
T KOG4591|consen 136 DEFLLELCELANRFQLEL 153 (280)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456789999999999876
No 11
>KOG0783|consensus
Probab=98.44 E-value=3.4e-07 Score=84.20 Aligned_cols=72 Identities=10% Similarity=0.182 Sum_probs=58.5
Q ss_pred hHHHHHhcCC----CCcEEEEeCCeEEEeehhhhcch-HHHHHhhcCC--C------------CCCCeEEeCCCCHHHHH
Q psy16232 5 KTEDVKRTER----IPCPAAVGFSTNIKGDLCSLSLC-PYFQKIFSET--P------------CKHPVIVLKDVQGWEIQ 65 (176)
Q Consensus 5 ~~~~l~r~~~----~~dv~l~v~~~~f~aHr~VLaa~-~yF~~lf~~~--e------------~~~~~I~l~~v~~~~~~ 65 (176)
.|..++++.. +.||+|.||+..|+|||.||+++ ++||.+|... . +....|.+.++.+..|+
T Consensus 544 sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe 623 (1267)
T KOG0783|consen 544 SFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFE 623 (1267)
T ss_pred hhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHH
Confidence 4677777655 45599999999999999999999 9999999762 1 22334557789999999
Q ss_pred HHhhhhccCce
Q psy16232 66 AIVDFMYKGEI 76 (176)
Q Consensus 66 ~lL~fiYtg~i 76 (176)
.+|.||||...
T Consensus 624 ~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 624 ILLHYIYTDTL 634 (1267)
T ss_pred HHHHHHhcccc
Confidence 99999999854
No 12
>KOG0783|consensus
Probab=98.33 E-value=3.3e-07 Score=84.32 Aligned_cols=85 Identities=16% Similarity=0.231 Sum_probs=62.1
Q ss_pred CCCCcEEEEe-CCeEEEeehhhhcch-HHHHHhhcCCCCCCCeEEeCC--CCHHHHHHHhhhhc-cCceecC-----HHH
Q psy16232 13 ERIPCPAAVG-FSTNIKGDLCSLSLC-PYFQKIFSETPCKHPVIVLKD--VQGWEIQAIVDFMY-KGEISVG-----QDQ 82 (176)
Q Consensus 13 ~~~~dv~l~v-~~~~f~aHr~VLaa~-~yF~~lf~~~e~~~~~I~l~~--v~~~~~~~lL~fiY-tg~i~i~-----~~~ 82 (176)
+..+|+.+.+ ||+.++|||++|+|+ +||..||..-+.....|.+.. +..+.++.+|+|+| +.+..+. .+.
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 3445544444 788899999999999 999999998544444455554 56999999999999 5555432 344
Q ss_pred HHHHHHHhhcccCCc
Q psy16232 83 ITSLIKAAENLQLPT 97 (176)
Q Consensus 83 v~~ll~aA~~l~v~~ 97 (176)
+-+++..|+.|-+.+
T Consensus 788 ~~~il~iaDqlli~~ 802 (1267)
T KOG0783|consen 788 MFEILSIADQLLILE 802 (1267)
T ss_pred hHHHHHHHHHHHHHH
Confidence 667788888777666
No 13
>KOG2838|consensus
Probab=97.66 E-value=3.2e-05 Score=63.66 Aligned_cols=80 Identities=11% Similarity=0.094 Sum_probs=61.2
Q ss_pred EEEEeCCeEEEeehhhhcch-HHHHHhhcCCCCCCCeEE----eCCCCHHHHHHHhhhhccCceecCH---HHHHHHHHH
Q psy16232 18 PAAVGFSTNIKGDLCSLSLC-PYFQKIFSETPCKHPVIV----LKDVQGWEIQAIVDFMYKGEISVGQ---DQITSLIKA 89 (176)
Q Consensus 18 v~l~v~~~~f~aHr~VLaa~-~yF~~lf~~~e~~~~~I~----l~~v~~~~~~~lL~fiYtg~i~i~~---~~v~~ll~a 89 (176)
+-+......|+|||++||++ ++|+-+.++.+.....+. .-+++.+.|+.+|.++|||+.-..+ .|..-+..+
T Consensus 133 ldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~QL 212 (401)
T KOG2838|consen 133 LDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILEQL 212 (401)
T ss_pred ceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchHHHHHHH
Confidence 77888889999999999999 999998887554443333 3388999999999999999875433 345556666
Q ss_pred hhcccCCc
Q psy16232 90 AENLQLPT 97 (176)
Q Consensus 90 A~~l~v~~ 97 (176)
+.-|+.+.
T Consensus 213 ~edFG~~k 220 (401)
T KOG2838|consen 213 CEDFGCFK 220 (401)
T ss_pred HHhhCCch
Confidence 76666544
No 14
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.56 E-value=8.4e-05 Score=51.38 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=61.1
Q ss_pred EEEEeCCeEEEeehhhhcch--HHHHHhhcCC-----CCCCCeEEeCCCCHHHHHHHhhhhcc-CceecC-HHHHHHHHH
Q psy16232 18 PAAVGFSTNIKGDLCSLSLC--PYFQKIFSET-----PCKHPVIVLKDVQGWEIQAIVDFMYK-GEISVG-QDQITSLIK 88 (176)
Q Consensus 18 v~l~v~~~~f~aHr~VLaa~--~yF~~lf~~~-----e~~~~~I~l~~v~~~~~~~lL~fiYt-g~i~i~-~~~v~~ll~ 88 (176)
|+|.|||+.|.+-+..|... .+|..++... ......+.+ |-+++.|+.||+|+.+ |.+..+ ...+..+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 68999999999999999854 8999999853 244556666 5799999999999999 676654 557889999
Q ss_pred HhhcccCCc
Q psy16232 89 AAENLQLPT 97 (176)
Q Consensus 89 aA~~l~v~~ 97 (176)
-|++|++..
T Consensus 80 Ea~fy~l~~ 88 (94)
T PF02214_consen 80 EAEFYGLDE 88 (94)
T ss_dssp HHHHHT-HH
T ss_pred HHHHcCCCc
Confidence 999999876
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.46 E-value=0.00065 Score=48.00 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=59.8
Q ss_pred EEEEe-CCeEEEeehhhhcchHHHHHhhcCCC---CCCCeEEeCCCCHHHHHHHhhhhccCce-----------------
Q psy16232 18 PAAVG-FSTNIKGDLCSLSLCPYFQKIFSETP---CKHPVIVLKDVQGWEIQAIVDFMYKGEI----------------- 76 (176)
Q Consensus 18 v~l~v-~~~~f~aHr~VLaa~~yF~~lf~~~e---~~~~~I~l~~v~~~~~~~lL~fiYtg~i----------------- 76 (176)
++|.. +|..|.+.+.+...+..++.++.+.. .+...|.+++++..+++.+++|++-..-
T Consensus 4 v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~ 83 (104)
T smart00512 4 IKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAE 83 (104)
T ss_pred EEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHH
Confidence 55654 78899999998765577899987621 1225899999999999999999964321
Q ss_pred --ecCHHHHHHHHHHhhcccC
Q psy16232 77 --SVGQDQITSLIKAAENLQL 95 (176)
Q Consensus 77 --~i~~~~v~~ll~aA~~l~v 95 (176)
.++.+.+.+|+.||++|++
T Consensus 84 F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 84 FLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHcCCHHHHHHHHHHHHhhCC
Confidence 1555678999999999975
No 16
>KOG2716|consensus
Probab=97.16 E-value=0.0011 Score=53.51 Aligned_cols=79 Identities=18% Similarity=0.268 Sum_probs=66.7
Q ss_pred EEEEeCCeEEEeehhhhcch-HHHHHhhcCC---CCCC-CeEEeCCCCHHHHHHHhhhhccCceecCH--HHHHHHHHHh
Q psy16232 18 PAAVGFSTNIKGDLCSLSLC-PYFQKIFSET---PCKH-PVIVLKDVQGWEIQAIVDFMYKGEISVGQ--DQITSLIKAA 90 (176)
Q Consensus 18 v~l~v~~~~f~aHr~VLaa~-~yF~~lf~~~---e~~~-~~I~l~~v~~~~~~~lL~fiYtg~i~i~~--~~v~~ll~aA 90 (176)
|.|.|||..|...+.-|.-. .+|+.|+..+ +... ..|-| |=++.-|..+|+||-.|.+.++. .++.+|+.=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 78999999999999999999 9999999984 2222 22333 56899999999999999988865 5678999999
Q ss_pred hcccCCc
Q psy16232 91 ENLQLPT 97 (176)
Q Consensus 91 ~~l~v~~ 97 (176)
.+|.+.+
T Consensus 86 ~fYlL~~ 92 (230)
T KOG2716|consen 86 EFYLLDG 92 (230)
T ss_pred HHhhHHH
Confidence 9999999
No 17
>KOG3473|consensus
Probab=97.02 E-value=0.0056 Score=42.91 Aligned_cols=78 Identities=10% Similarity=0.180 Sum_probs=63.8
Q ss_pred EEEEe-CCeEEEeehhhhcchHHHHHhhcC----CCCCCCeEEeCCCCHHHHHHHhhhh-----ccCc------eecCHH
Q psy16232 18 PAAVG-FSTNIKGDLCSLSLCPYFQKIFSE----TPCKHPVIVLKDVQGWEIQAIVDFM-----YKGE------ISVGQD 81 (176)
Q Consensus 18 v~l~v-~~~~f~aHr~VLaa~~yF~~lf~~----~e~~~~~I~l~~v~~~~~~~lL~fi-----Ytg~------i~i~~~ 81 (176)
|+|+. ||..|-.-|-+-..+.-.|+|+.+ .+...+++.++++++.+++.+.+|+ |++. ..|+++
T Consensus 19 VkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippe 98 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPE 98 (112)
T ss_pred eEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHH
Confidence 78876 677888888766555778999997 3567789999999999999999998 6665 366789
Q ss_pred HHHHHHHHhhcccC
Q psy16232 82 QITSLIKAAENLQL 95 (176)
Q Consensus 82 ~v~~ll~aA~~l~v 95 (176)
...+||.+|++|.+
T Consensus 99 maleLL~aAn~Lec 112 (112)
T KOG3473|consen 99 MALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHhhhhcC
Confidence 99999999999863
No 18
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.94 E-value=0.0056 Score=39.25 Aligned_cols=56 Identities=7% Similarity=0.075 Sum_probs=44.6
Q ss_pred EEEEe-CCeEEEeehhhhcchHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhhhhcc
Q psy16232 18 PAAVG-FSTNIKGDLCSLSLCPYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYK 73 (176)
Q Consensus 18 v~l~v-~~~~f~aHr~VLaa~~yF~~lf~~~e~~~~~I~l~~v~~~~~~~lL~fiYt 73 (176)
++|+. ||..|.+.+.+...+..++.|+.+.......|.++++++..++.+++|++-
T Consensus 3 v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHh
Confidence 45544 889999999998877888999987433333899999999999999999963
No 19
>KOG0511|consensus
Probab=96.82 E-value=0.00099 Score=57.20 Aligned_cols=73 Identities=15% Similarity=0.260 Sum_probs=61.8
Q ss_pred eEEEeehhhhcchHHHHHhhcCC--CC----CCCeEEeCCCCHHHHHHHhhhhccCceecCHHHHHHHHHHhhcccCCc
Q psy16232 25 TNIKGDLCSLSLCPYFQKIFSET--PC----KHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAENLQLPT 97 (176)
Q Consensus 25 ~~f~aHr~VLaa~~yF~~lf~~~--e~----~~~~I~l~~v~~~~~~~lL~fiYtg~i~i~~~~v~~ll~aA~~l~v~~ 97 (176)
..++||+.+++-++||+.||.++ ++ ..+...++.+...+.+.+++|+|+.+..+..+-..+++-.|+++.+.+
T Consensus 301 ~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 34999999999889999999983 32 224455678889999999999999999999999999999999998775
No 20
>KOG0511|consensus
Probab=96.26 E-value=0.0012 Score=56.79 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=72.7
Q ss_pred hhHHHHHhcCCC-Cc--EEEEe-CCeEEEeehhhhcch-HHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhhhhccCceec
Q psy16232 4 SKTEDVKRTERI-PC--PAAVG-FSTNIKGDLCSLSLC-PYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISV 78 (176)
Q Consensus 4 s~~~~l~r~~~~-~d--v~l~v-~~~~f~aHr~VLaa~-~yF~~lf~~~e~~~~~I~l~~v~~~~~~~lL~fiYtg~i~i 78 (176)
+....++++..+ +| +++.. +|+.|.|||..|+|+ .+|...+..-+....+|+--.+-+.+|..++.|+|-..-.+
T Consensus 135 ahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~~na~ 214 (516)
T KOG0511|consen 135 AHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLNTNAE 214 (516)
T ss_pred hHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchhhhhhhHhhhhHHHHHHHHhhhhh
Confidence 345677888877 44 66655 688999999999999 87766665544445566555678899999999999986667
Q ss_pred CHHHHHHHHHHhhcccCCc
Q psy16232 79 GQDQITSLIKAAENLQLPT 97 (176)
Q Consensus 79 ~~~~v~~ll~aA~~l~v~~ 97 (176)
..++..+++....+|++..
T Consensus 215 ~~~qynallsi~~kF~~e~ 233 (516)
T KOG0511|consen 215 WKDQYNALLSIEVKFSKEK 233 (516)
T ss_pred hhhHHHHHHhhhhhccHHH
Confidence 7778889999999998876
No 21
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=95.86 E-value=0.0043 Score=52.25 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=64.7
Q ss_pred eEEEeehhhhcch-HHHHHhhcC---CCCCCCeEEeC-CCCHHHHHHHhhhhccCceecCHHHHHHHHHHhhcccCCc
Q psy16232 25 TNIKGDLCSLSLC-PYFQKIFSE---TPCKHPVIVLK-DVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAENLQLPT 97 (176)
Q Consensus 25 ~~f~aHr~VLaa~-~yF~~lf~~---~e~~~~~I~l~-~v~~~~~~~lL~fiYtg~i~i~~~~v~~ll~aA~~l~v~~ 97 (176)
+.|.|.+-+|-.. .||+..+.. .....++|.|. .++-.+|+=+++|+......++.+|+..++..+++|||+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH
Confidence 5799999999999 999999964 44455667777 6888999999999999999999999999999999999998
No 22
>KOG2714|consensus
Probab=95.73 E-value=0.022 Score=49.63 Aligned_cols=82 Identities=11% Similarity=0.053 Sum_probs=62.9
Q ss_pred Cc-EEEEeCCeEEEeehhhhcch---HHHHHhhcCCC---CCCCeEEeCCCCHHHHHHHhhhhccCceecCHHHHHHHHH
Q psy16232 16 PC-PAAVGFSTNIKGDLCSLSLC---PYFQKIFSETP---CKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIK 88 (176)
Q Consensus 16 ~d-v~l~v~~~~f~aHr~VLaa~---~yF~~lf~~~e---~~~~~I~l~~v~~~~~~~lL~fiYtg~i~i~~~~v~~ll~ 88 (176)
-+ |.|.|+|+.|.--+.-|+.. .+|.+|+.++. ....-..+=|=+|+.|..+|+|+-||++.++.-....++.
T Consensus 10 ~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 10 GDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred CceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 35 99999999999888887654 79999998632 2222223336689999999999999999997655556555
Q ss_pred -HhhcccCCc
Q psy16232 89 -AAENLQLPT 97 (176)
Q Consensus 89 -aA~~l~v~~ 97 (176)
=|.+|++..
T Consensus 90 dEA~fYGl~~ 99 (465)
T KOG2714|consen 90 DEAMFYGLTP 99 (465)
T ss_pred hhhhhcCcHH
Confidence 899999887
No 23
>KOG2838|consensus
Probab=95.14 E-value=0.014 Score=48.39 Aligned_cols=74 Identities=7% Similarity=0.124 Sum_probs=48.4
Q ss_pred HHHHHhcCCCCc--EEEEeCCe--------------EEEeehhhhcch-HHHHHhhcC-----CCC------CCCeEEeC
Q psy16232 6 TEDVKRTERIPC--PAAVGFST--------------NIKGDLCSLSLC-PYFQKIFSE-----TPC------KHPVIVLK 57 (176)
Q Consensus 6 ~~~l~r~~~~~d--v~l~v~~~--------------~f~aHr~VLaa~-~yF~~lf~~-----~e~------~~~~I~l~ 57 (176)
++-++......| +..+++|+ .++||++|.|++ ++||.++.. +|. ....|.++
T Consensus 226 mkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifd 305 (401)
T KOG2838|consen 226 MKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFD 305 (401)
T ss_pred HHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeech
Confidence 344555555666 33444433 689999999999 999999875 121 22456666
Q ss_pred C-CCHHHH-HHHhhhhccCceecC
Q psy16232 58 D-VQGWEI-QAIVDFMYKGEISVG 79 (176)
Q Consensus 58 ~-v~~~~~-~~lL~fiYtg~i~i~ 79 (176)
+ +=+..| -.+|.++||..++++
T Consensus 306 E~I~PkafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 306 ELIFPKAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred hhhcchhhhhhhhhhheecccchh
Confidence 3 444444 457899999987553
No 24
>KOG1665|consensus
Probab=94.48 E-value=0.1 Score=42.25 Aligned_cols=79 Identities=15% Similarity=0.157 Sum_probs=62.4
Q ss_pred EEEEeCCeEEEeehhhhcch---HHHHHhhcCC-----CCCCCeEEeCCCCHHHHHHHhhhhccCceec-CHHHHHHHHH
Q psy16232 18 PAAVGFSTNIKGDLCSLSLC---PYFQKIFSET-----PCKHPVIVLKDVQGWEIQAIVDFMYKGEISV-GQDQITSLIK 88 (176)
Q Consensus 18 v~l~v~~~~f~aHr~VLaa~---~yF~~lf~~~-----e~~~~~I~l~~v~~~~~~~lL~fiYtg~i~i-~~~~v~~ll~ 88 (176)
|.+.++|+.|---+--|.-+ ....+||.++ +....- .+=|=++.-|+.+|+|+-.|++.. +.-++..+++
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa-~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLe 89 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGA-VLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLE 89 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCce-EEEccCchhhHHHHHHHhcCceeecCCccHHHHHH
Confidence 88999999998877777666 5788999873 222333 333678889999999999999854 4567899999
Q ss_pred HhhcccCCc
Q psy16232 89 AAENLQLPT 97 (176)
Q Consensus 89 aA~~l~v~~ 97 (176)
.|++||+-+
T Consensus 90 eArff~i~s 98 (302)
T KOG1665|consen 90 EARFFQILS 98 (302)
T ss_pred HhhHHhhHh
Confidence 999999988
No 25
>KOG1724|consensus
Probab=94.07 E-value=0.15 Score=39.05 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=60.7
Q ss_pred EEEE-eCCeEEEeehhhhcchHHHHHhhcCCCCCC--CeEEeCCCCHHHHHHHhhhhccCce------------------
Q psy16232 18 PAAV-GFSTNIKGDLCSLSLCPYFQKIFSETPCKH--PVIVLKDVQGWEIQAIVDFMYKGEI------------------ 76 (176)
Q Consensus 18 v~l~-v~~~~f~aHr~VLaa~~yF~~lf~~~e~~~--~~I~l~~v~~~~~~~lL~fiYtg~i------------------ 76 (176)
+.|. .+|+.|.+-..+...+...++++....... ..|.++.|++.+|..+++|++-.+-
T Consensus 7 ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~ 86 (162)
T KOG1724|consen 7 IKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIP 86 (162)
T ss_pred EEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCcc
Confidence 4443 478889988888776666677776533222 4899999999999999999987442
Q ss_pred -------ecCHHHHHHHHHHhhcccCCc
Q psy16232 77 -------SVGQDQITSLIKAAENLQLPT 97 (176)
Q Consensus 77 -------~i~~~~v~~ll~aA~~l~v~~ 97 (176)
.++..++.+++.||++|.+++
T Consensus 87 ~WD~~Flk~d~~tLfdli~AAnyLdi~g 114 (162)
T KOG1724|consen 87 EWDAEFLKVDQGTLFDLILAANYLDIKG 114 (162)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhhcccHH
Confidence 234457889999999999999
No 26
>KOG3840|consensus
Probab=92.77 E-value=0.3 Score=41.23 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=69.8
Q ss_pred hcCCCCc-EEEEeCCeEEEeehhhhcch--HHHHHhhcC-----CCCCCCeEEeC-CCCHHHHHHHhhhhccCceecCH-
Q psy16232 11 RTERIPC-PAAVGFSTNIKGDLCSLSLC--PYFQKIFSE-----TPCKHPVIVLK-DVQGWEIQAIVDFMYKGEISVGQ- 80 (176)
Q Consensus 11 r~~~~~d-v~l~v~~~~f~aHr~VLaa~--~yF~~lf~~-----~e~~~~~I~l~-~v~~~~~~~lL~fiYtg~i~i~~- 80 (176)
+..+--+ ++..+++..|-.-+.+|.+. .-.-.||.. .+....+.++- +++..+|+.+|+|--+|.+.-++
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~ 169 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSS 169 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCC
Confidence 4445556 88999999999999999888 666777765 24445566664 79999999999999999987654
Q ss_pred HHHHHHHHHhhcccCCc
Q psy16232 81 DQITSLIKAAENLQLPT 97 (176)
Q Consensus 81 ~~v~~ll~aA~~l~v~~ 97 (176)
-.+.+|-+++++|.|+.
T Consensus 170 vSvpELrEACDYLlipF 186 (438)
T KOG3840|consen 170 VSVSELREACDYLLVPF 186 (438)
T ss_pred CchHHHHhhcceEEeec
Confidence 35788999999999887
No 27
>KOG1987|consensus
Probab=88.04 E-value=0.14 Score=42.26 Aligned_cols=78 Identities=12% Similarity=-0.018 Sum_probs=56.1
Q ss_pred EEeCCeEEEeehhhhcch-HHHHHhhcCC--CCCCCeEEeCCCCHHHHHHHhhhhccCceecCHHHHH---HHHHHhhcc
Q psy16232 20 AVGFSTNIKGDLCSLSLC-PYFQKIFSET--PCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQIT---SLIKAAENL 93 (176)
Q Consensus 20 l~v~~~~f~aHr~VLaa~-~yF~~lf~~~--e~~~~~I~l~~v~~~~~~~lL~fiYtg~i~i~~~~v~---~ll~aA~~l 93 (176)
..+++..+.+|+.++++. +.|+.++... +.....+.+.+.+++.++.+..|.|+..-.-..+... .++.++..+
T Consensus 105 ~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~ 184 (297)
T KOG1987|consen 105 IDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKY 184 (297)
T ss_pred hcccCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhcccc
Confidence 344566799999999999 9999999873 2333445777899999999999999975544434332 555566666
Q ss_pred cCCc
Q psy16232 94 QLPT 97 (176)
Q Consensus 94 ~v~~ 97 (176)
+.+.
T Consensus 185 ~~~~ 188 (297)
T KOG1987|consen 185 KNRH 188 (297)
T ss_pred ccHH
Confidence 6555
No 28
>KOG2723|consensus
Probab=85.34 E-value=3.6 Score=33.17 Aligned_cols=84 Identities=15% Similarity=0.231 Sum_probs=61.7
Q ss_pred CCCCc-EEEEeCCeEEEeehhhhcch--HHHHHhhcCC----CCCCCeEEeCCCCHHHHHHHhhhhccCceecCH--HHH
Q psy16232 13 ERIPC-PAAVGFSTNIKGDLCSLSLC--PYFQKIFSET----PCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQ--DQI 83 (176)
Q Consensus 13 ~~~~d-v~l~v~~~~f~aHr~VLaa~--~yF~~lf~~~----e~~~~~I~l~~v~~~~~~~lL~fiYtg~i~i~~--~~v 83 (176)
....+ +.+.+||+.+..-..-|..- ....+||++. ........| |=+...|+.+|+|+-|-...+++ .++
T Consensus 5 ~~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~ 83 (221)
T KOG2723|consen 5 SEYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEV 83 (221)
T ss_pred cccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhH
Confidence 34567 88999999887766656666 7778888861 112222333 34566799999999996677766 578
Q ss_pred HHHHHHhhcccCCc
Q psy16232 84 TSLIKAAENLQLPT 97 (176)
Q Consensus 84 ~~ll~aA~~l~v~~ 97 (176)
..+..-|++++++.
T Consensus 84 ~~L~rEA~f~~l~~ 97 (221)
T KOG2723|consen 84 ERLVREAEFFQLEA 97 (221)
T ss_pred HHHHHHHHHHcccc
Confidence 99999999999997
No 29
>KOG2715|consensus
Probab=82.30 E-value=3.3 Score=32.13 Aligned_cols=84 Identities=11% Similarity=0.099 Sum_probs=62.1
Q ss_pred CCCc-EEEEeCCeEEEeehhhhcch-HHH-HHhhcCC-----CCCCCeEEeCCCCHHHHHHHhhhhccCceecCHHHHHH
Q psy16232 14 RIPC-PAAVGFSTNIKGDLCSLSLC-PYF-QKIFSET-----PCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITS 85 (176)
Q Consensus 14 ~~~d-v~l~v~~~~f~aHr~VLaa~-~yF-~~lf~~~-----e~~~~~I~l~~v~~~~~~~lL~fiYtg~i~i~~~~v~~ 85 (176)
+..- |.|.|||..|..-|.-|+-- .-| ..+.+.. .+...--.+=|=++.-|..+|+|+-.|++-++.-.-+.
T Consensus 18 g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeG 97 (210)
T KOG2715|consen 18 GVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEG 97 (210)
T ss_pred CceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhc
Confidence 3444 99999999999999999888 555 4444432 11222233446678889999999999999888755566
Q ss_pred HHHHhhcccCCc
Q psy16232 86 LIKAAENLQLPT 97 (176)
Q Consensus 86 ll~aA~~l~v~~ 97 (176)
+|.-|+++.++.
T Consensus 98 vL~EAefyn~~~ 109 (210)
T KOG2715|consen 98 VLEEAEFYNDPS 109 (210)
T ss_pred cchhhhccCChH
Confidence 889999999886
No 30
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=65.58 E-value=24 Score=26.28 Aligned_cols=80 Identities=11% Similarity=0.063 Sum_probs=53.2
Q ss_pred EEEE-eCCeEEEeehhhhcchHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhhhhccCce--------------------
Q psy16232 18 PAAV-GFSTNIKGDLCSLSLCPYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYKGEI-------------------- 76 (176)
Q Consensus 18 v~l~-v~~~~f~aHr~VLaa~~yF~~lf~~~e~~~~~I~l~~v~~~~~~~lL~fiYtg~i-------------------- 76 (176)
|.+. .+|..|.+.+.+---+-..+.++.......-.|..+.+...+|..+++|+-..+-
T Consensus 4 i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~w 83 (158)
T COG5201 4 IELESIDGEIFRVDENIAERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFW 83 (158)
T ss_pred eEEEecCCcEEEehHHHHHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHH
Confidence 3443 4778888877653222566776655333334466779999999999999954321
Q ss_pred -----ecCHHHHHHHHHHhhcccCCc
Q psy16232 77 -----SVGQDQITSLIKAAENLQLPT 97 (176)
Q Consensus 77 -----~i~~~~v~~ll~aA~~l~v~~ 97 (176)
.++.+.+-++..+|++|.++.
T Consensus 84 dr~Fm~vDqemL~eI~laaNYL~ikp 109 (158)
T COG5201 84 DRFFMEVDQEMLLEICLAANYLEIKP 109 (158)
T ss_pred HHHHHHhhHHHHHHHHHhhccccchH
Confidence 123345667888999999887
No 31
>KOG3713|consensus
Probab=40.61 E-value=85 Score=28.24 Aligned_cols=79 Identities=10% Similarity=0.007 Sum_probs=50.9
Q ss_pred EEEEeCCeEEEeehhhhcch--HHHHHhhcCC------------CCCCCeEEeCCCCHHHHHHHhhhhccCceecCHHHH
Q psy16232 18 PAAVGFSTNIKGDLCSLSLC--PYFQKIFSET------------PCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQI 83 (176)
Q Consensus 18 v~l~v~~~~f~aHr~VLaa~--~yF~~lf~~~------------e~~~~~I~l~~v~~~~~~~lL~fiYtg~i~i~~~~v 83 (176)
|.+.|||..+..-+..|... .....+-..+ ....++..+ |=++..|..+++|.+||++....+--
T Consensus 33 i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfF-DR~P~~F~~Vl~fYrtGkLH~p~~vC 111 (477)
T KOG3713|consen 33 VRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFF-DRHPGAFAYVLNFYRTGKLHVPADVC 111 (477)
T ss_pred EEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeee-ccChHHHHHHHHHHhcCeeccccccc
Confidence 89999999888777776654 3333322211 112233333 45789999999999999998766532
Q ss_pred -HHHHHHhhcccCCc
Q psy16232 84 -TSLIKAAENLQLPT 97 (176)
Q Consensus 84 -~~ll~aA~~l~v~~ 97 (176)
..+.+=-+++++++
T Consensus 112 ~~~F~eEL~yWgI~~ 126 (477)
T KOG3713|consen 112 PLSFEEELDYWGIDE 126 (477)
T ss_pred hHHHHHHHHHhCCCh
Confidence 33445556777777
No 32
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=38.99 E-value=31 Score=19.63 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=16.1
Q ss_pred hhhccCcee----cCHHHHHHHHHHhh
Q psy16232 69 DFMYKGEIS----VGQDQITSLIKAAE 91 (176)
Q Consensus 69 ~fiYtg~i~----i~~~~v~~ll~aA~ 91 (176)
--.|.|++. ++.+.+++++.+|.
T Consensus 9 TIfY~G~V~Vfd~v~~~Ka~~im~lA~ 35 (36)
T PF06200_consen 9 TIFYGGQVCVFDDVPPDKAQEIMLLAS 35 (36)
T ss_pred EEEECCEEEEeCCCCHHHHHHHHHHhc
Confidence 346888873 46678888877775
No 33
>PRK02853 hypothetical protein; Provisional
Probab=32.08 E-value=74 Score=24.25 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=43.1
Q ss_pred hcch-HHHHHhhcCCCCCCCeEEeC--CCCHHHHHHHhhhhccCceecCHHHHHHHHHHhhccc
Q psy16232 34 LSLC-PYFQKIFSETPCKHPVIVLK--DVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAENLQ 94 (176)
Q Consensus 34 Laa~-~yF~~lf~~~e~~~~~I~l~--~v~~~~~~~lL~fiYtg~i~i~~~~v~~ll~aA~~l~ 94 (176)
..-| .||.+.=+..++.-.-|.|. ++..++-+.+.+-+ .|++.++.++...|..+..-|.
T Consensus 96 f~ICeSYy~Air~a~p~qIEaIDMgRRGiHNEgs~lL~eRL-~GKi~~D~dTARRLFTLICvLh 158 (161)
T PRK02853 96 FMICESYYQAIRTATPSQIEAIDMGRRGLHNEGSELLQERL-EGKIEVDFDTARRLFTLICVLH 158 (161)
T ss_pred HHHHHHHHHHHHhCCHhHhhhhhhhccccchHHHHHHHHHH-cCCeeechHHHHHHHHHHHhhe
Confidence 4567 77777666666665666664 77777766666666 8999999998888777665554
No 34
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=26.55 E-value=51 Score=22.16 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=14.6
Q ss_pred cCCccc---HHHHHHHHhhhC
Q psy16232 158 IMTPIP---QSFFLKVLRLHG 175 (176)
Q Consensus 158 ~~~~~~---~~~~~~~~~~~~ 175 (176)
+=+||| +++|-+||.+-|
T Consensus 16 DGspIP~~~L~LY~~VM~lE~ 36 (84)
T PF13319_consen 16 DGSPIPPAMLELYNEVMDLEA 36 (84)
T ss_pred CCCcCCHHHHHHHHHHHHHHh
Confidence 558998 789999998754
No 35
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=25.94 E-value=37 Score=22.32 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=16.3
Q ss_pred cCHHHHHHHHHHhhcccCCc
Q psy16232 78 VGQDQITSLIKAAENLQLPT 97 (176)
Q Consensus 78 i~~~~v~~ll~aA~~l~v~~ 97 (176)
++.+.+.+++.||++|+|+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~ 30 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKG 30 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HH
T ss_pred cCHHHHHHHHHHHHHHcchH
Confidence 46778999999999999998
No 36
>PF06793 UPF0262: Uncharacterised protein family (UPF0262); InterPro: IPR008321 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.14 E-value=1.1e+02 Score=23.22 Aligned_cols=61 Identities=20% Similarity=0.359 Sum_probs=41.3
Q ss_pred hcch-HHHHHhhcCCCCCCCeEEeC--CCCHHHHHHHhhhhccCceecCHHHHHHHHHHhhcccC
Q psy16232 34 LSLC-PYFQKIFSETPCKHPVIVLK--DVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAENLQL 95 (176)
Q Consensus 34 Laa~-~yF~~lf~~~e~~~~~I~l~--~v~~~~~~~lL~fiYtg~i~i~~~~v~~ll~aA~~l~v 95 (176)
..-| .||.+.=+..++.-.-|.|. ++..++-+.+.+-+ .|++.++.++...|..+-.-|..
T Consensus 93 f~ICeSYy~Air~a~p~qIEaIDMgRRGlHNEGa~lL~eRL-~GKi~~D~dTARRLFTLIcvLh~ 156 (158)
T PF06793_consen 93 FMICESYYEAIRTATPSQIEAIDMGRRGLHNEGAELLQERL-EGKIEVDFDTARRLFTLICVLHW 156 (158)
T ss_pred HHHHHHHHHHHhhCCHhhhhhhhhhhhccchHHHHHHHHHh-cCCcccChhhHHHHHHHhheeee
Confidence 3456 67776665555555566664 67777766666655 89999999888887766555443
No 37
>KOG3342|consensus
Probab=20.75 E-value=51 Score=25.27 Aligned_cols=18 Identities=6% Similarity=-0.378 Sum_probs=14.8
Q ss_pred c-EEEEeCCeEEE-eehhhh
Q psy16232 17 C-PAAVGFSTNIK-GDLCSL 34 (176)
Q Consensus 17 d-v~l~v~~~~f~-aHr~VL 34 (176)
| +++.++|+.++ +||+|-
T Consensus 82 divVf~vegR~IPiVHRviK 101 (180)
T KOG3342|consen 82 DIVVFKVEGREIPIVHRVIK 101 (180)
T ss_pred cEEEEEECCccCchhHHHHH
Confidence 5 88899999998 688774
Done!