RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16232
(176 letters)
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 54.1 bits (131), Expect = 2e-10
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 34 LSLC-PYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAEN 92
L+ YF I+ T + + V+ Q +++F+Y G +++ + + +AA+
Sbjct: 41 LASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADY 100
Query: 93 LQLP 96
L++
Sbjct: 101 LKVE 104
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 53.0 bits (128), Expect = 1e-09
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 34 LSLC-PYFQKIFS-ETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAE 91
L+ C YF +T + V + ++V + ++ F Y ++ + +D + + + E
Sbjct: 55 LAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVE 114
Query: 92 NLQLP 96
L +
Sbjct: 115 FLSVH 119
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 52.2 bits (126), Expect = 2e-09
Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 34 LSLC-PYFQKIFS-ETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAE 91
L+ C YF + + + + ++V + ++ F Y ++ + ++ + + K E
Sbjct: 48 LAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVE 107
Query: 92 NLQLP 96
L +
Sbjct: 108 FLSVH 112
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 51.8 bits (125), Expect = 2e-09
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 32 CSLSLCPYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAE 91
CS +FQ ++ + +VL ++DF Y G +++ ++ AA
Sbjct: 46 CS----HFFQSLYGDG--SGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAR 99
Query: 92 NLQLP 96
L++P
Sbjct: 100 ELRVP 104
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 51.9 bits (125), Expect = 3e-09
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 37 CPYFQKIFSETP----CKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAEN 92
PY + + P I L+ + ++ I+D+++ G+I + +D I +++AA+
Sbjct: 70 SPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADL 129
Query: 93 LQLP 96
L L
Sbjct: 130 LLLT 133
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 51.5 bits (124), Expect = 3e-09
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 32 CSLSLCPYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAE 91
CS +FQ+I+ + +VL ++DF Y G +++ ++ AA+
Sbjct: 47 CS----HFFQRIYGDG--TGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAK 100
Query: 92 NLQLP 96
L++P
Sbjct: 101 ELRVP 105
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 50.3 bits (121), Expect = 8e-09
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 37 CPYFQKIFSE--TPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAENLQ 94
YF+K+F+ + V + V + A++DF Y ++V + ++ AA L+
Sbjct: 48 SQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLE 107
Query: 95 LP 96
+P
Sbjct: 108 IP 109
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 49.9 bits (120), Expect = 1e-08
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 37 CPYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAENLQLP 96
F+ +F L + Q I+++ Y + + + L+ AAE L++
Sbjct: 51 SKMFEILFHR---NSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIE 107
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 49.9 bits (120), Expect = 1e-08
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 32 CSLSLCPYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAE 91
CS YF+ +F + + V+ L + +++FMY ++S+ + + ++ A
Sbjct: 49 CS----EYFKMLFVD---QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVAT 101
Query: 92 NLQLP 96
LQ+
Sbjct: 102 FLQMQ 106
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 49.9 bits (120), Expect = 1e-08
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 34 LSLC-PYFQKIF-SETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAE 91
L+ C YF + +T V + ++V ++ F Y ++ + ++ I +I+ AE
Sbjct: 51 LAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAE 110
Query: 92 NLQLP 96
L++
Sbjct: 111 FLRMH 115
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 51.4 bits (124), Expect = 2e-08
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 31 LCSLSLCPYFQKIFSETP----CKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSL 86
L + S PY + + P I L+ + ++ I+D+++ G+I + +D I +
Sbjct: 50 LAAAS--PYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDV 107
Query: 87 IKAAENLQLP 96
++AA+ L L
Sbjct: 108 VQAADLLLLT 117
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 48.4 bits (116), Expect = 4e-08
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 34 LSLC-PYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAEN 92
L+ YF+ +F+ + V + VQ Q I+ F Y G +S+ L+ A
Sbjct: 52 LAASSSYFRDLFNNSR-SAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGF 110
Query: 93 LQLP 96
LQ+
Sbjct: 111 LQIQ 114
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 48.0 bits (115), Expect = 6e-08
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 34 LSLC-PYFQKIFSETP--CKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAA 90
L C F IF++ + + ++ ++DFMY +++ + I +++ A
Sbjct: 48 LMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATA 107
Query: 91 ENLQLP 96
LQ+
Sbjct: 108 MYLQME 113
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 47.3 bits (113), Expect = 1e-07
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 34 LSLC-PYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYKGEIS-VGQDQITSLIKAAE 91
LS YF ++FS V+ L ++ I++++Y +I V D + LIK+ +
Sbjct: 50 LSASSTYFHQLFSV---AGQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQ 106
Query: 92 NLQLP 96
L +
Sbjct: 107 LLGVK 111
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 46.5 bits (111), Expect = 2e-07
Identities = 6/60 (10%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 37 CPYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAENLQLP 96
+ + + + +++F+Y + + ++ L +AA L +
Sbjct: 53 SQQLGRRGQ-------WALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQ 105
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 46.5 bits (111), Expect = 1e-06
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 34 LSLC-PYFQKIFS----ETPCKHPVIVLKDVQGWE------IQAIVDFMYKGEISVGQDQ 82
L+ YF + S E + + ++ ++A++++MY G I V
Sbjct: 54 LAAATEYFTPLLSGQFSE--SRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGS 111
Query: 83 ITSLIKAAENLQLP 96
+ +++ A+ L
Sbjct: 112 VHEVLELADRFLLI 125
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 37 CPYFQKIFS----ETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAEN 92
F +F E I + DV+ ++ +MY EI + D + + + AA+
Sbjct: 35 SSVFYAMFYGDLAE---VKSEIHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKK 91
Query: 93 LQLP 96
+P
Sbjct: 92 YIVP 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 3e-04
Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 56/190 (29%)
Query: 24 STNIKGDLCSLSLCPYFQKIFSETPCKHPVIVLKDVQGWEI----------------QAI 67
S+NIK + S+ +++ P ++ ++VL +VQ + + +
Sbjct: 220 SSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 68 VDFMYKGEISVGQDQITSLIKAAENLQLP-TQQLFVLSFGYIP--LP------APTSQKI 118
DF +S SL + L + L + P LP P +++
Sbjct: 278 TDF-----LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--RRL 330
Query: 119 SGFTKKLSEMVI----YL---------ILKIIIPML--YEFNGLYT--VVNPEAQKIMTP 161
S + + + + + I++ + +L E+ ++ V P + I T
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 162 IPQSFFLKVL 171
+ L ++
Sbjct: 391 L-----LSLI 395
Score = 27.1 bits (59), Expect = 3.6
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 19/78 (24%)
Query: 41 QKI-FSETPCKHPVIVLKDVQGWE----------------IQAIVDFMYKGEISVGQDQI 83
QKI T +L +Q + + AI+DF+ K E ++ +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 84 TSLIKAAENLQLPTQQLF 101
T L++ A L + +F
Sbjct: 565 TDLLRIA--LMAEDEAIF 580
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 38.4 bits (90), Expect = 4e-04
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 37 CPYFQKIFS----ETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAEN 92
P F +F E K + + DV+ + ++ F+Y G+ L+ AA+
Sbjct: 57 SPVFSAMFEHEMEE--SKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK 114
Query: 93 LQLP 96
L
Sbjct: 115 YALE 118
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 37.9 bits (89), Expect = 4e-04
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 37 CPYFQKIFS----ETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAEN 92
P F +F E K + + DV+ + ++ F+Y G+ L+ AA+
Sbjct: 48 SPVFSAMFEHEMEE--SKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK 105
Query: 93 LQLP 96
L
Sbjct: 106 YALE 109
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 37.6 bits (87), Expect = 0.001
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 37 CPYFQKIFS----ETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAEN 92
P F +F E+ K + + DV+ + ++ F+Y G+ L+ AA+
Sbjct: 197 SPVFSAMFEHEMEES--KKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK 254
Query: 93 LQLP 96
L
Sbjct: 255 YALE 258
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor,
immonodominant antigen, mycoba tuberculosis, ION-dipole
interactions; 2.16A {Mycobacterium tuberculosis} SCOP:
c.94.1.1
Length = 350
Score = 28.3 bits (63), Expect = 1.6
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 98 QQLFVLSFGYIPLPAPTSQKISGFTKKLS 126
+ F+ + PLP + +S
Sbjct: 321 KASFLDQVHFQPLPPAVVKLSDALIATIS 349
>3g63_A Pfluding; subatomic resolution, phosphate binding, DING protein,
hydrogen ATOM, phosphate binding protein; 0.88A
{Pseudomonas fluorescens SBW25} PDB: 3g62_A 2q9t_A
2v3q_A 2cap_A
Length = 381
Score = 26.7 bits (58), Expect = 4.9
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 98 QQLFVLSFGYIPLPAPTSQKIS 119
+ + ++PLP +
Sbjct: 325 NDAAITANAFVPLPTAWKATVR 346
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH
domain-like fold, structural genomics, joint CENT
structural genomics; HET: MSE; 1.90A {Syntrophus
aciditrophicus}
Length = 191
Score = 26.1 bits (57), Expect = 5.2
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 154 EAQKIMTPIPQSFFLKVLRLHGH 176
A+ I++ + + K+ HG+
Sbjct: 3 TARNILSYSYEEYVEKITAFHGY 25
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural
genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens}
PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A*
2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Length = 421
Score = 25.9 bits (57), Expect = 9.0
Identities = 3/38 (7%), Positives = 11/38 (28%), Gaps = 6/38 (15%)
Query: 108 IPLPAPTSQKISGFTKKLSEMVIYLILKIIIPMLYEFN 145
+ + + +++P+ EF+
Sbjct: 277 VAWAGGLDPPMGD------PEYLAAFRIVVMPIAREFS 308
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 9.2
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 10/44 (22%)
Query: 28 KG---DLCSLSLCPYFQKIFSETPCKHPVIVLKDVQGWEIQAIV 68
+G DL S Q +++ H KD G+ I IV
Sbjct: 1629 QGMGMDLYKTS--KAAQDVWNRA-DNH----FKDTYGFSILDIV 1665
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 25.9 bits (58), Expect = 9.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 158 IMTPIPQSFFLKVLRLHGH 176
I +PQ FF +++ GH
Sbjct: 46 IHVAVPQKFFKDHVKVIGH 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.416
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,606,621
Number of extensions: 142962
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 38
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.4 bits)