RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16232
         (176 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 37  CPYFQKIFSETPCKH--PVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAENLQ 94
              F  IF++   ++   + +  ++       ++DFMY   +++ +  I +++  A  LQ
Sbjct: 48  SGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQ 107

Query: 95  LP 96
           + 
Sbjct: 108 ME 109


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 38.9 bits (90), Expect = 6e-05
 Identities = 10/61 (16%), Positives = 21/61 (34%)

Query: 36  LCPYFQKIFSETPCKHPVIVLKDVQGWEIQAIVDFMYKGEISVGQDQITSLIKAAENLQL 95
           L    +              L  +     Q I+++ Y   +    + +  L+ AAE L++
Sbjct: 47  LACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEI 106

Query: 96  P 96
            
Sbjct: 107 E 107


>d1pc3a_ c.94.1.1 (A:) Phosphate-binding protein {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 333

 Score = 27.7 bits (60), Expect = 0.73
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 98  QQLFVLSFGYIPLPAPTSQKISGFTKKLS 126
           +  F+    + PLP    +        +S
Sbjct: 304 KASFLDQVHFQPLPPAVVKLSDALIATIS 332


>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco
           (Nicotiana tabacum) [TaxId: 4097]}
          Length = 83

 Score = 25.8 bits (56), Expect = 1.2
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 145 NGLYTVVNPEAQKIMTPIPQSFFLKVLRLHGH 176
             ++T      Q+   P+PQ    +VL  H +
Sbjct: 48  TLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79


>d2v3qa1 c.94.1.1 (A:1-376) PstS-like phosphate-binding protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 376

 Score = 26.8 bits (58), Expect = 1.3
 Identities = 3/21 (14%), Positives = 9/21 (42%)

Query: 98  QQLFVLSFGYIPLPAPTSQKI 118
               + +  ++PLP+     +
Sbjct: 330 NDAAIEANAFVPLPSNWKAAV 350


>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
           N-terminal domain {Azospirillum brasilense [TaxId: 192]}
          Length = 422

 Score = 26.5 bits (58), Expect = 1.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 158 IMTPIPQSFFLKVLRLHGH 176
           I   +PQ FF   +++ GH
Sbjct: 46  IHVAVPQKFFKDHVKVIGH 64


>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 128

 Score = 25.2 bits (55), Expect = 2.8
 Identities = 10/101 (9%), Positives = 36/101 (35%), Gaps = 7/101 (6%)

Query: 50  KHPVIVLKDVQGWEIQAIVDFM---YKGEISVGQDQITSLIKAAENLQLPTQQLFVLSFG 106
            +P++V   V+  +  +   F+       +   Q     +++   ++    + L  +   
Sbjct: 32  NYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCIK 91

Query: 107 YIPLPAPTSQKISGFTKKLSEMVIYLILKIIIPMLYEFNGL 147
            +P     S   +    K + + + L +     +++  + +
Sbjct: 92  AVPPENEPSDTQA----KGATLDLNLSINACDKLIFRPDAV 128


>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
           N-terminal domain {Synechocystis sp. [TaxId: 1143]}
          Length = 430

 Score = 25.4 bits (55), Expect = 4.2
 Identities = 4/19 (21%), Positives = 7/19 (36%)

Query: 158 IMTPIPQSFFLKVLRLHGH 176
           +MT IP+    +       
Sbjct: 46  VMTAIPRELLAQWFNTRNL 64


>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 273

 Score = 24.8 bits (54), Expect = 7.1
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 109 PLPAPTSQKISGFTKKLSEMVIYLI-LKII--IPMLYEFNGLYTVV 151
           PL     +KIS F     E VI +  +  I  +P+L E  G+    
Sbjct: 221 PLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYF 266


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 643,695
Number of extensions: 28568
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 10
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)